Query 047562
Match_columns 246
No_of_seqs 171 out of 929
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 12:15:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.4 3.7E-13 7.9E-18 93.2 6.9 53 68-120 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.4 6.6E-13 1.4E-17 92.7 7.1 57 67-123 3-59 (60)
3 smart00353 HLH helix loop heli 99.3 3.3E-12 7.1E-17 87.4 6.6 52 73-124 1-52 (53)
4 KOG1318 Helix loop helix trans 98.9 1.7E-09 3.6E-14 102.2 7.6 69 58-126 223-292 (411)
5 KOG2483 Upstream transcription 98.7 1.4E-07 3E-12 83.6 9.8 79 56-134 47-125 (232)
6 KOG1319 bHLHZip transcription 98.5 4E-07 8.6E-12 77.7 7.5 67 67-133 61-131 (229)
7 KOG4029 Transcription factor H 98.3 1.4E-06 3E-11 76.9 5.5 64 64-127 105-169 (228)
8 KOG3561 Aryl-hydrocarbon recep 98.1 5.2E-06 1.1E-10 84.6 5.8 62 61-122 13-75 (803)
9 KOG4304 Transcriptional repres 98.0 3.6E-06 7.8E-11 75.5 3.6 62 62-123 26-92 (250)
10 KOG3960 Myogenic helix-loop-he 98.0 4.3E-05 9.4E-10 68.1 9.9 68 65-134 115-183 (284)
11 KOG0561 bHLH transcription fac 97.9 1.1E-05 2.3E-10 73.6 3.6 64 64-128 56-119 (373)
12 cd04895 ACT_ACR_1 ACT domain-c 97.9 0.00017 3.6E-09 53.0 9.3 68 175-244 4-71 (72)
13 PLN03217 transcription factor 97.8 5.8E-05 1.3E-09 56.8 6.1 57 80-136 19-78 (93)
14 cd04897 ACT_ACR_3 ACT domain-c 97.6 0.00061 1.3E-08 50.4 8.9 66 175-242 4-73 (75)
15 cd04900 ACT_UUR-like_1 ACT dom 97.6 0.001 2.3E-08 48.0 9.9 66 173-240 2-72 (73)
16 cd04927 ACT_ACR-like_2 Second 97.3 0.0027 6E-08 46.5 9.5 67 174-242 2-72 (76)
17 cd04928 ACT_TyrKc Uncharacteri 97.2 0.0052 1.1E-07 44.6 9.4 64 174-241 3-67 (68)
18 KOG2588 Predicted DNA-binding 97.2 0.00057 1.2E-08 70.5 5.7 67 66-134 274-340 (953)
19 cd04899 ACT_ACR-UUR-like_2 C-t 97.2 0.0074 1.6E-07 42.4 9.8 64 175-240 3-69 (70)
20 cd04896 ACT_ACR-like_3 ACT dom 97.1 0.0042 9.1E-08 45.9 8.5 66 175-243 3-74 (75)
21 cd04926 ACT_ACR_4 C-terminal 97.1 0.0073 1.6E-07 43.6 9.4 67 173-242 2-68 (72)
22 cd04925 ACT_ACR_2 ACT domain-c 97.0 0.0095 2.1E-07 43.3 9.2 66 175-242 3-73 (74)
23 KOG4447 Transcription factor T 96.5 0.0021 4.5E-08 53.6 2.7 58 65-123 75-132 (173)
24 PRK05007 PII uridylyl-transfer 96.4 0.024 5.2E-07 59.4 10.6 83 160-244 794-881 (884)
25 KOG3910 Helix loop helix trans 96.2 0.0045 9.7E-08 60.1 3.7 63 64-126 522-585 (632)
26 cd04873 ACT_UUR-ACR-like ACT d 95.8 0.14 3.1E-06 35.4 9.2 50 174-224 2-51 (70)
27 PRK00275 glnD PII uridylyl-tra 95.7 0.097 2.1E-06 55.0 11.4 81 161-243 801-887 (895)
28 PRK03381 PII uridylyl-transfer 95.7 0.11 2.5E-06 53.6 11.5 72 170-243 597-668 (774)
29 PF13740 ACT_6: ACT domain; PD 95.6 0.098 2.1E-06 38.0 7.9 63 173-240 3-65 (76)
30 PRK01759 glnD PII uridylyl-tra 95.6 0.094 2E-06 54.8 10.6 81 160-242 769-854 (854)
31 PRK04374 PII uridylyl-transfer 95.6 0.13 2.9E-06 53.8 11.7 81 160-242 782-867 (869)
32 PF01842 ACT: ACT domain; Int 95.4 0.12 2.6E-06 35.3 7.4 63 175-241 3-65 (66)
33 KOG3898 Transcription factor N 95.4 0.0091 2E-07 53.8 2.1 60 64-123 68-127 (254)
34 PRK03059 PII uridylyl-transfer 95.3 0.12 2.7E-06 53.9 10.3 81 161-242 773-855 (856)
35 PRK05092 PII uridylyl-transfer 95.1 0.2 4.4E-06 52.7 11.5 81 161-243 830-916 (931)
36 cd04893 ACT_GcvR_1 ACT domains 95.1 0.28 6.2E-06 35.7 9.1 62 174-240 3-64 (77)
37 PRK00194 hypothetical protein; 95.1 0.15 3.3E-06 37.9 7.8 65 173-240 4-68 (90)
38 PRK03381 PII uridylyl-transfer 95.1 0.22 4.7E-06 51.6 11.2 77 161-241 694-772 (774)
39 cd04869 ACT_GcvR_2 ACT domains 94.9 0.38 8.3E-06 34.6 9.3 62 175-240 2-69 (81)
40 PRK01759 glnD PII uridylyl-tra 94.9 0.35 7.7E-06 50.6 12.2 81 161-243 664-750 (854)
41 cd04872 ACT_1ZPV ACT domain pr 94.7 0.21 4.6E-06 37.1 7.7 64 174-240 3-66 (88)
42 TIGR01693 UTase_glnD [Protein- 94.6 0.29 6.2E-06 51.1 10.9 79 161-241 766-849 (850)
43 TIGR01693 UTase_glnD [Protein- 94.6 0.23 4.9E-06 51.8 10.1 72 170-243 666-742 (850)
44 PRK05007 PII uridylyl-transfer 94.6 0.4 8.7E-06 50.3 11.9 81 161-243 688-774 (884)
45 COG2844 GlnD UTP:GlnB (protein 94.5 0.18 3.9E-06 52.1 8.7 79 158-239 775-855 (867)
46 PF13291 ACT_4: ACT domain; PD 94.4 0.21 4.5E-06 36.2 6.9 63 173-239 7-71 (80)
47 cd04875 ACT_F4HF-DF N-terminal 94.4 0.45 9.7E-06 34.0 8.6 65 175-240 2-66 (74)
48 KOG4395 Transcription factor A 94.3 0.092 2E-06 47.2 5.5 57 67-123 173-229 (285)
49 PRK03059 PII uridylyl-transfer 93.9 0.46 1E-05 49.7 10.7 72 170-243 676-751 (856)
50 cd04870 ACT_PSP_1 CT domains f 93.9 0.67 1.5E-05 33.3 8.5 62 175-240 2-63 (75)
51 cd04887 ACT_MalLac-Enz ACT_Mal 93.8 0.59 1.3E-05 32.9 8.0 61 175-239 2-63 (74)
52 PRK00275 glnD PII uridylyl-tra 93.4 0.75 1.6E-05 48.5 11.1 71 171-243 703-779 (895)
53 cd04888 ACT_PheB-BS C-terminal 92.9 0.68 1.5E-05 32.6 7.2 63 175-240 3-66 (76)
54 cd04886 ACT_ThrD-II-like C-ter 92.7 0.94 2E-05 30.9 7.6 59 177-239 3-66 (73)
55 PRK04374 PII uridylyl-transfer 92.7 0.77 1.7E-05 48.2 10.0 74 170-244 688-762 (869)
56 PRK05092 PII uridylyl-transfer 92.5 1 2.3E-05 47.5 10.9 79 162-242 720-805 (931)
57 PRK04435 hypothetical protein; 91.8 1 2.3E-05 37.1 7.9 68 170-240 67-135 (147)
58 cd04876 ACT_RelA-SpoT ACT dom 90.7 1.6 3.4E-05 28.5 6.8 60 176-239 2-62 (71)
59 cd04894 ACT_ACR-like_1 ACT dom 90.6 2.5 5.5E-05 30.4 7.7 66 174-240 2-67 (69)
60 cd02116 ACT ACT domains are co 89.7 3 6.5E-05 25.6 7.1 34 176-210 2-35 (60)
61 cd04880 ACT_AAAH-PDT-like ACT 88.8 4.3 9.4E-05 28.8 8.2 60 179-239 6-66 (75)
62 cd04877 ACT_TyrR N-terminal AC 87.9 2.4 5.2E-05 30.3 6.3 58 175-239 3-60 (74)
63 cd04874 ACT_Af1403 N-terminal 86.6 7.8 0.00017 26.2 8.2 60 174-239 2-62 (72)
64 cd04905 ACT_CM-PDT C-terminal 86.3 8.2 0.00018 27.8 8.5 44 180-224 9-53 (80)
65 PRK08577 hypothetical protein; 85.9 8.5 0.00018 31.0 9.2 65 173-240 57-123 (136)
66 cd04931 ACT_PAH ACT domain of 85.3 7.4 0.00016 29.5 8.0 66 174-241 16-82 (90)
67 PRK06027 purU formyltetrahydro 85.2 7.7 0.00017 35.5 9.6 65 173-240 7-73 (286)
68 cd04881 ACT_HSDH-Hom ACT_HSDH_ 85.0 4.9 0.00011 27.6 6.6 62 174-239 2-65 (79)
69 PRK13011 formyltetrahydrofolat 84.9 7.3 0.00016 35.7 9.2 66 173-240 8-73 (286)
70 cd04904 ACT_AAAH ACT domain of 83.6 8.1 0.00017 27.7 7.3 44 179-223 7-51 (74)
71 TIGR00655 PurU formyltetrahydr 83.4 10 0.00022 34.6 9.6 62 175-239 3-66 (280)
72 cd04879 ACT_3PGDH-like ACT_3PG 81.5 12 0.00027 24.9 7.4 57 177-240 4-62 (71)
73 PRK13010 purU formyltetrahydro 80.9 11 0.00024 34.6 8.8 66 173-240 10-77 (289)
74 COG2844 GlnD UTP:GlnB (protein 79.2 10 0.00022 39.7 8.7 78 165-244 677-758 (867)
75 cd04909 ACT_PDH-BS C-terminal 78.9 15 0.00032 25.3 7.2 59 175-239 4-64 (69)
76 cd04883 ACT_AcuB C-terminal AC 78.6 19 0.00041 24.8 8.6 59 174-239 3-63 (72)
77 PRK07334 threonine dehydratase 78.6 11 0.00024 35.8 8.4 64 173-240 327-395 (403)
78 cd04884 ACT_CBS C-terminal ACT 78.4 20 0.00043 25.0 8.1 57 180-240 7-66 (72)
79 cd04882 ACT_Bt0572_2 C-termina 76.5 17 0.00036 24.3 6.7 51 180-239 7-59 (65)
80 PRK00227 glnD PII uridylyl-tra 75.8 20 0.00044 37.0 9.7 71 171-244 545-616 (693)
81 cd04878 ACT_AHAS N-terminal AC 75.3 20 0.00044 23.9 7.0 59 176-239 4-64 (72)
82 COG4492 PheB ACT domain-contai 73.9 17 0.00038 30.0 7.0 67 171-240 69-138 (150)
83 KOG3558 Hypoxia-inducible fact 73.6 2.9 6.3E-05 42.7 3.0 47 68-117 46-96 (768)
84 KOG3559 Transcriptional regula 73.5 3.1 6.8E-05 40.2 3.1 43 73-118 6-52 (598)
85 cd04903 ACT_LSD C-terminal ACT 73.5 24 0.00052 23.5 7.5 57 176-239 3-61 (71)
86 PF05088 Bac_GDH: Bacterial NA 73.2 22 0.00047 39.9 9.7 69 172-242 489-562 (1528)
87 cd04929 ACT_TPH ACT domain of 72.2 21 0.00046 25.9 6.7 44 180-224 8-52 (74)
88 KOG4447 Transcription factor T 72.1 4 8.7E-05 34.3 3.0 47 74-121 28-74 (173)
89 PF13710 ACT_5: ACT domain; PD 69.9 17 0.00037 25.5 5.5 55 185-241 4-58 (63)
90 cd04889 ACT_PDH-BS-like C-term 67.2 27 0.00058 23.0 5.9 41 179-220 5-46 (56)
91 cd04908 ACT_Bt0572_1 N-termina 66.6 39 0.00084 23.2 8.3 56 175-239 4-59 (66)
92 COG3830 ACT domain-containing 65.1 14 0.00031 28.3 4.5 63 175-240 6-68 (90)
93 cd04901 ACT_3PGDH C-terminal A 64.9 7.8 0.00017 26.5 2.9 55 178-239 5-59 (69)
94 cd04930 ACT_TH ACT domain of t 62.7 31 0.00068 27.3 6.4 49 175-224 44-93 (115)
95 PRK10872 relA (p)ppGpp synthet 62.4 32 0.0007 35.8 7.9 63 174-240 668-732 (743)
96 PF05687 DUF822: Plant protein 62.4 13 0.00028 30.9 4.2 30 64-93 7-36 (150)
97 KOG3560 Aryl-hydrocarbon recep 61.6 6.3 0.00014 39.4 2.5 37 78-117 35-75 (712)
98 PRK11899 prephenate dehydratas 60.4 48 0.001 30.3 7.9 62 175-240 197-259 (279)
99 TIGR00691 spoT_relA (p)ppGpp s 58.9 38 0.00082 34.9 7.7 62 174-239 612-674 (683)
100 PF14689 SPOB_a: Sensor_kinase 58.6 29 0.00062 24.3 4.9 44 74-127 14-57 (62)
101 PRK11589 gcvR glycine cleavage 58.1 30 0.00064 29.9 5.9 63 173-240 9-71 (190)
102 cd04885 ACT_ThrD-I Tandem C-te 57.0 63 0.0014 22.4 6.7 55 180-239 6-61 (68)
103 TIGR00119 acolac_sm acetolacta 56.2 58 0.0013 27.3 7.2 61 176-241 5-67 (157)
104 PRK11589 gcvR glycine cleavage 56.0 79 0.0017 27.2 8.2 66 173-240 96-165 (190)
105 PRK11092 bifunctional (p)ppGpp 55.7 46 0.001 34.4 7.7 62 174-239 628-690 (702)
106 PRK11895 ilvH acetolactate syn 54.2 64 0.0014 27.1 7.2 61 176-241 6-68 (161)
107 cd04902 ACT_3PGDH-xct C-termin 52.0 47 0.001 22.6 5.2 55 179-240 6-62 (73)
108 PRK11898 prephenate dehydratas 51.1 70 0.0015 29.1 7.5 61 176-239 200-261 (283)
109 KOG3582 Mlx interactors and re 50.5 6.1 0.00013 40.5 0.5 70 65-134 648-719 (856)
110 PRK10622 pheA bifunctional cho 49.3 82 0.0018 30.1 7.9 58 179-240 304-362 (386)
111 PF14992 TMCO5: TMCO5 family 48.1 29 0.00063 31.9 4.4 33 101-133 138-170 (280)
112 PLN02705 beta-amylase 48.0 73 0.0016 32.6 7.5 29 65-93 81-109 (681)
113 cd04868 ACT_AK-like ACT domain 46.3 73 0.0016 20.0 5.7 24 185-208 15-38 (60)
114 PF02120 Flg_hook: Flagellar h 45.1 77 0.0017 22.7 5.6 46 163-208 28-78 (85)
115 COG3074 Uncharacterized protei 44.8 43 0.00094 24.6 4.0 26 109-134 13-38 (79)
116 CHL00100 ilvH acetohydroxyacid 44.0 1.1E+02 0.0024 26.1 7.1 62 175-241 5-68 (174)
117 PF06005 DUF904: Protein of un 43.9 53 0.0011 24.0 4.4 26 109-134 13-38 (72)
118 PRK06737 acetolactate synthase 43.1 1.2E+02 0.0025 22.4 6.2 61 176-241 6-68 (76)
119 COG0077 PheA Prephenate dehydr 42.3 1.3E+02 0.0027 27.8 7.6 61 176-240 198-259 (279)
120 PRK10222 PTS system L-ascorbat 40.9 59 0.0013 24.1 4.5 56 188-243 5-78 (85)
121 PRK11152 ilvM acetolactate syn 40.6 1.5E+02 0.0032 21.8 7.6 56 180-241 11-68 (76)
122 smart00338 BRLZ basic region l 39.9 47 0.001 23.1 3.6 23 113-135 25-47 (65)
123 PF00170 bZIP_1: bZIP transcri 39.4 50 0.0011 22.9 3.7 22 113-134 25-46 (64)
124 PRK15422 septal ring assembly 39.1 58 0.0013 24.4 4.0 27 109-135 13-39 (79)
125 PF02344 Myc-LZ: Myc leucine z 36.5 41 0.00089 20.8 2.4 22 71-92 8-29 (32)
126 COG0317 SpoT Guanosine polypho 35.2 1.3E+02 0.0029 31.2 7.2 63 173-239 628-691 (701)
127 COG0788 PurU Formyltetrahydrof 34.6 2.4E+02 0.0053 26.0 8.1 65 173-240 8-74 (287)
128 cd04898 ACT_ACR-like_4 ACT dom 34.4 1.2E+02 0.0027 22.5 5.1 46 179-224 6-53 (77)
129 PRK13562 acetolactate synthase 34.3 1.6E+02 0.0035 22.2 5.9 61 177-241 7-69 (84)
130 PRK06382 threonine dehydratase 33.9 1.9E+02 0.0042 27.4 7.9 61 176-240 334-399 (406)
131 PF09789 DUF2353: Uncharacteri 32.3 1.8E+02 0.004 27.3 7.1 35 101-135 66-100 (319)
132 KOG4005 Transcription factor X 31.5 2.6E+02 0.0056 25.4 7.6 65 62-135 53-118 (292)
133 cd04892 ACT_AK-like_2 ACT doma 31.5 1.4E+02 0.0031 19.0 5.7 24 185-208 15-38 (65)
134 TIGR01268 Phe4hydrox_tetr phen 31.3 1.6E+02 0.0034 28.9 6.7 49 175-224 19-68 (436)
135 PRK08198 threonine dehydratase 31.2 2.7E+02 0.0057 26.3 8.3 62 174-239 329-395 (404)
136 cd04919 ACT_AK-Hom3_2 ACT doma 30.8 1.6E+02 0.0034 19.6 5.1 26 185-210 16-41 (66)
137 cd04922 ACT_AKi-HSDH-ThrA_2 AC 29.2 1.7E+02 0.0037 19.2 6.2 25 184-208 15-39 (66)
138 TIGR01127 ilvA_1Cterm threonin 29.0 3.2E+02 0.0068 25.5 8.3 63 174-240 307-374 (380)
139 PF10393 Matrilin_ccoil: Trime 29.0 1.7E+02 0.0036 19.7 4.6 31 104-134 13-43 (47)
140 cd04890 ACT_AK-like_1 ACT doma 28.5 1.8E+02 0.0039 19.2 5.8 31 186-218 16-46 (62)
141 PF08826 DMPK_coil: DMPK coile 26.5 1.6E+02 0.0035 20.8 4.4 27 108-134 33-59 (61)
142 PRK15385 magnesium transport p 25.8 4.8E+02 0.01 23.2 8.8 65 173-238 143-210 (225)
143 cd04912 ACT_AKiii-LysC-EC-like 25.6 2.4E+02 0.0053 19.8 6.8 33 184-218 15-47 (75)
144 cd04918 ACT_AK1-AT_2 ACT domai 24.1 2.4E+02 0.0052 19.2 5.1 28 185-212 15-42 (65)
145 PF09849 DUF2076: Uncharacteri 23.7 2.9E+02 0.0063 24.9 6.7 51 80-133 6-74 (247)
146 PF14193 DUF4315: Domain of un 23.3 1.7E+02 0.0037 22.0 4.3 27 109-135 10-36 (83)
147 PF13224 DUF4032: Domain of un 22.6 1.5E+02 0.0033 25.2 4.3 39 186-224 20-58 (165)
148 PF03285 Paralemmin: Paralemmi 22.3 2.6E+02 0.0057 25.7 6.1 120 111-242 7-129 (278)
149 PLN02317 arogenate dehydratase 21.8 4.8E+02 0.01 25.1 8.1 61 175-239 286-361 (382)
150 cd04911 ACT_AKiii-YclM-BS_1 AC 21.5 3.1E+02 0.0067 20.2 5.3 26 181-207 13-38 (76)
151 PF07544 Med9: RNA polymerase 21.4 3.4E+02 0.0074 20.0 5.8 46 83-133 33-78 (83)
152 KOG3896 Dynactin, subunit p62 21.3 99 0.0022 29.5 3.2 28 106-133 138-165 (449)
153 PRK08526 threonine dehydratase 21.3 4.8E+02 0.01 24.9 8.0 60 176-239 330-394 (403)
154 cd04937 ACT_AKi-DapG-BS_2 ACT 21.2 2.7E+02 0.0059 18.8 4.8 21 184-204 15-35 (64)
155 cd04923 ACT_AK-LysC-DapG-like_ 21.0 2.4E+02 0.0053 18.1 6.2 23 184-206 14-36 (63)
156 PLN02905 beta-amylase 20.6 1.3E+02 0.0028 31.0 4.0 30 64-93 82-111 (702)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.43 E-value=3.7e-13 Score=93.22 Aligned_cols=53 Identities=32% Similarity=0.465 Sum_probs=48.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CcCCCCChhHHHHHHHHHHHHHH
Q 047562 68 MKIMRRDIERHRRQEMSTLYRSLRSLLPLE--YLKGKRSMSDHMNEAVNYIKNLQ 120 (246)
Q Consensus 68 ~~~~h~~~ER~RR~~mn~~f~~LrsllP~~--~~~~k~s~~~il~~Ai~YIk~Lq 120 (246)
+|..|+..||+||..||..|..|+.+||.. ....|.++++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999996 25678999999999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.41 E-value=6.6e-13 Score=92.68 Aligned_cols=57 Identities=33% Similarity=0.443 Sum_probs=52.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHH
Q 047562 67 KMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRI 123 (246)
Q Consensus 67 ~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v 123 (246)
.++..|+..||+||.+||..|..|+++||......|.+++.||..|++||+.|++.+
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999999876678888899999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.34 E-value=3.3e-12 Score=87.35 Aligned_cols=52 Identities=37% Similarity=0.521 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHH
Q 047562 73 RDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQ 124 (246)
Q Consensus 73 ~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~ 124 (246)
+..||+||.+||..|..|+++||......|.++++||..|++||+.|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999987655678888899999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.95 E-value=1.7e-09 Score=102.25 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=58.0
Q ss_pred ccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHHHH
Q 047562 58 FAVNDDNSKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLK-GKRSMSDHMNEAVNYIKNLQNRIQKL 126 (246)
Q Consensus 58 ~~~~~~~~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~-~k~s~~~il~~Ai~YIk~Lq~~v~~L 126 (246)
.++.+.+...||..||++||+||..||+++..|..|||.+... .|..+..||..+++||++||+..++.
T Consensus 223 ~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 223 DATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred ccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 3444667789999999999999999999999999999987432 35567778999999999999877744
No 5
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.67 E-value=1.4e-07 Score=83.63 Aligned_cols=79 Identities=15% Similarity=0.282 Sum_probs=62.5
Q ss_pred ccccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 56 NIFAVNDDNSKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 56 ~~~~~~~~~~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
+..+.....+...|..||+.||+||.+++..|..|+.+||...-..+-+...||..|..||+.|+.+..+.....+++.
T Consensus 47 ~s~~~a~~~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~ 125 (232)
T KOG2483|consen 47 RSAAPATSSAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLS 125 (232)
T ss_pred cccCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344445566788999999999999999999999999999875433333678899999999999987777666555544
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.49 E-value=4e-07 Score=77.75 Aligned_cols=67 Identities=22% Similarity=0.350 Sum_probs=57.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCC----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 67 KMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKG----KRSMSDHMNEAVNYIKNLQNRIQKLSEKRDEL 133 (246)
Q Consensus 67 ~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~----k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l 133 (246)
.+|..|-..||+||+-+|..|..|..|||.+...+ |.|++-||-.+|+||..|.++..+-+++...|
T Consensus 61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L 131 (229)
T KOG1319|consen 61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTL 131 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999887666 88999999999999999998776665554444
No 7
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.25 E-value=1.4e-06 Score=76.86 Aligned_cols=64 Identities=27% Similarity=0.371 Sum_probs=57.3
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCc-CCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047562 64 NSKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYL-KGKRSMSDHMNEAVNYIKNLQNRIQKLS 127 (246)
Q Consensus 64 ~~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~-~~k~s~~~il~~Ai~YIk~Lq~~v~~L~ 127 (246)
.....+..+|+.||+|-+.+|..|..||.+||.... ..|.|+.++|..||.||+.|++-++.-+
T Consensus 105 ~~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 105 QTSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred chhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 346778899999999999999999999999999887 7899999999999999999998865444
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.06 E-value=5.2e-06 Score=84.55 Aligned_cols=62 Identities=23% Similarity=0.405 Sum_probs=53.0
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC-cCCCCChhHHHHHHHHHHHHHHHH
Q 047562 61 NDDNSKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEY-LKGKRSMSDHMNEAVNYIKNLQNR 122 (246)
Q Consensus 61 ~~~~~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~-~~~k~s~~~il~~Ai~YIk~Lq~~ 122 (246)
.++.+..+|..|+.+||+||++||..+..|.+|||.+. ..+|..|.+||..||.+||.+++.
T Consensus 13 ~d~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 13 SDSKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccchhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 35556777999999999999999999999999999876 225666777799999999999884
No 9
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.03 E-value=3.6e-06 Score=75.53 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=54.0
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcC-----CCCChhHHHHHHHHHHHHHHHHH
Q 047562 62 DDNSKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLK-----GKRSMSDHMNEAVNYIKNLQNRI 123 (246)
Q Consensus 62 ~~~~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~-----~k~s~~~il~~Ai~YIk~Lq~~v 123 (246)
......+|..|-..||+||.+||+.+..|+.|||...++ .|.-+++||+-+++|++.|+...
T Consensus 26 ~~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 26 SKTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred hhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 344568899999999999999999999999999987766 46778899999999999998754
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.01 E-value=4.3e-05 Score=68.05 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=55.5
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHH-hcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 65 SKKMKIMRRDIERHRRQEMSTLYRSLR-SLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 65 ~~~~~~~h~~~ER~RR~~mn~~f~~Lr-sllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
...+|..--+.||+|=+|+|+.|.+|+ .-.++. +-+..+++||..||.||..||.-++++.+....+.
T Consensus 115 svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NP--NQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~~ 183 (284)
T KOG3960|consen 115 SVDRRKAATMRERRRLKKVNEAFETLKRRTSSNP--NQRLPKVEILRSAIRYIERLQALLQEQDQAEKGLA 183 (284)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--cccccHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 456777888999999999999999994 444443 34678899999999999999999998887655553
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.87 E-value=1.1e-05 Score=73.56 Aligned_cols=64 Identities=25% Similarity=0.376 Sum_probs=54.2
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 047562 64 NSKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLSE 128 (246)
Q Consensus 64 ~~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~ 128 (246)
+...+|..-|--||+|=+-+|..|..||+|||.. .-.|.|++.||..+.+||.+|+..--+|-.
T Consensus 56 erRmRReIANsNERRRMQSINAGFqsLr~LlPr~-eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~ 119 (373)
T KOG0561|consen 56 ERRMRREIANSNERRRMQSINAGFQSLRALLPRK-EGEKLSKAAILQQTADYIHQLEGHKTELLP 119 (373)
T ss_pred HHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcc-cchhhHHHHHHHHHHHHHHHHHhccccccc
Confidence 4456667778899999999999999999999976 457999999999999999999976555543
No 12
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.87 E-value=0.00017 Score=53.00 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=55.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHhcCCC
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKLTSPS 244 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I~~~ 244 (246)
|.|.+..++| +|++|.++|.++||+|..|.|++.|+++.-+|.+.-.++ ..++-.+..+.|++.+.++
T Consensus 4 iev~a~DRpG-LL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g-~kl~d~~~~~~l~~~L~~~ 71 (72)
T cd04895 4 VKVDSARKPG-ILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLG-NKLTDDSLIAYIEKSLGTS 71 (72)
T ss_pred EEEEECCcCC-HHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCC-CCCCCHHHHHHHHHHhccC
Confidence 5566766655 699999999999999999999999999999999986666 5676566667777766554
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.81 E-value=5.8e-05 Score=56.77 Aligned_cols=57 Identities=30% Similarity=0.416 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCCCCc---CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047562 80 RQEMSTLYRSLRSLLPLEYL---KGKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDELRRL 136 (246)
Q Consensus 80 R~~mn~~f~~LrsllP~~~~---~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~~~ 136 (246)
-++|+++..+|+.|+|.... .+|.|.+.+|.++.+||+.|+.+|..|.++..+|...
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36899999999999997543 3578888999999999999999999999998887753
No 14
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.61 E-value=0.00061 Score=50.43 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=53.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCC----HHHHHHHHHHhcC
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNID----PFELQQKIMKLTS 242 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~----~~~l~~~L~~~I~ 242 (246)
|.|.|.-++| +|.+|..+|-++|++|.+|.|++.|+++.-+|.+.-.++ ..+. .+.|+++|..+|.
T Consensus 4 veV~~~DRpG-LL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g-~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 4 VTVQCRDRPK-LLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDG-RTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEeCCcCc-HHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCC-CccCCHHHHHHHHHHHHHHHh
Confidence 5667776655 699999999999999999999999999999999987766 4554 3466677776654
No 15
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.59 E-value=0.001 Score=48.02 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=48.0
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEecCCCCCCCHH----HHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI-NERLLHNIESEVNDGGRNIDPF----ELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~-~~~~l~ti~akv~~~~~~i~~~----~l~~~L~~~ 240 (246)
.+|.|.|..++ ++|+++..+|..+||+|++|.+.+. ++.++-+|.+.-.++ ..+... .|++.|.++
T Consensus 2 ~~i~v~~~Dr~-gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~-~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 2 TEVFIYTPDRP-GLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDG-EPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEEecCCC-CHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCC-CCCChHHHHHHHHHHHHhh
Confidence 35677776555 4799999999999999999999886 688999998864444 344433 344444443
No 16
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.34 E-value=0.0027 Score=46.53 Aligned_cols=67 Identities=19% Similarity=0.064 Sum_probs=49.7
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEecCCCCCCC---HHHHHHHHHHhcC
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTK-INERLLHNIESEVNDGGRNID---PFELQQKIMKLTS 242 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~-~~~~~l~ti~akv~~~~~~i~---~~~l~~~L~~~I~ 242 (246)
.+.|.|..++| +|+++..+|..+||.|++|.+++ .++.++-+|.+.-.++ ...+ .++|+++|.+++.
T Consensus 2 ~~ei~~~Dr~g-Lfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~-~~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 2 LLKLFCSDRKG-LLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARE-LLHTKKRREETYDYLRAVLG 72 (76)
T ss_pred EEEEEECCCCC-HHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCC-CCCCHHHHHHHHHHHHHHHc
Confidence 45666765554 69999999999999999999997 8999999999864433 2112 3456677766654
No 17
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.20 E-value=0.0052 Score=44.61 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=51.5
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHhc
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTK-INERLLHNIESEVNDGGRNIDPFELQQKIMKLT 241 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~-~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I 241 (246)
+|.|.|..++ ++|+++..+|..+||.|++|.+.+ .+|.++-+|.+.-.++ =+...|.++|++++
T Consensus 3 eI~V~~~Dr~-gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~---~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKP-KLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKR---GETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCc-chHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCc---cchHHHHHHHHHhh
Confidence 6777776554 579999999999999999999886 5788888888874443 46778888888765
No 18
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.18 E-value=0.00057 Score=70.48 Aligned_cols=67 Identities=27% Similarity=0.347 Sum_probs=56.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 66 KKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 66 ~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
..+|..||.+||+=|.-+|+++..|+.++|.... |..++..|..||+||++|+...+.|......+.
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~a--Kl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEA--KLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHh--hhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 6789999999999999999999999999997654 455566799999999999988777776555444
No 19
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.16 E-value=0.0074 Score=42.42 Aligned_cols=64 Identities=25% Similarity=0.328 Sum_probs=47.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCH---HHHHHHHHHh
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDP---FELQQKIMKL 240 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~---~~l~~~L~~~ 240 (246)
|.|.+..++| .|.+|+.+|.++|+.|+++.+.+.++.++.+|++.-.++ ...+. .+|+++|.++
T Consensus 3 l~v~~~d~~g-ll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~-~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 3 LELTALDRPG-LLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADG-QPLDPERQEALRAALGEA 69 (70)
T ss_pred EEEEEcCCcc-HHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCC-CcCCHHHHHHHHHHHHhh
Confidence 5566665555 699999999999999999999988888889999887665 33333 3355555544
No 20
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.13 E-value=0.0042 Score=45.94 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=51.7
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEEecCCCCCC-C---HHHHHHHHHHhcCC
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCIST--KINERLLHNIESEVNDGGRNI-D---PFELQQKIMKLTSP 243 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S--~~~~~~l~ti~akv~~~~~~i-~---~~~l~~~L~~~I~~ 243 (246)
|.|.|.-++| +|++|..+|.++|++|..|.|+ +.|+++.-+|.+. .++ ..+ + ...|+++|.+++..
T Consensus 3 lev~a~DRpG-LL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~-~~g-~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 3 LQIRCVDQKG-LLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQ-SDG-KKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred EEEEeCCccc-HHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEe-CCC-CccCCHHHHHHHHHHHHHHhcC
Confidence 4566766655 6999999999999999999999 9999999999983 333 233 3 46788888887653
No 21
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.10 E-value=0.0073 Score=43.61 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=49.3
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHhcC
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKLTS 242 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I~ 242 (246)
.+|.|.+..+. ++|++|..+|.++|+.|+++.+.+.++..+.+|++.-.++ ...+. +..++|++.|.
T Consensus 2 tri~V~~~D~~-Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~-~~~~~-~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRV-GLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANG-NPVDP-KTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCcc-CHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCC-CcCCH-HHHHHHHHHhc
Confidence 45666666554 4799999999999999999999988888888888764444 33444 45556766654
No 22
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.97 E-value=0.0095 Score=43.27 Aligned_cols=66 Identities=24% Similarity=0.235 Sum_probs=50.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecC-CCCCC-C---HHHHHHHHHHhcC
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVND-GGRNI-D---PFELQQKIMKLTS 242 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~-~~~~i-~---~~~l~~~L~~~I~ 242 (246)
|.|.+..+ +++|++|..+|..+|+.|++|.+.+.|+.++-+|.+.-.+ + ..+ + .+.|++.|.+++.
T Consensus 3 ~~v~~~Dr-~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~-~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 3 IELTGTDR-PGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETG-APIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEECCC-CCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCC-CCCCCHHHHHHHHHHHHHHhc
Confidence 45556555 4579999999999999999999999999999999876433 3 222 2 3577777777664
No 23
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.46 E-value=0.0021 Score=53.57 Aligned_cols=58 Identities=26% Similarity=0.364 Sum_probs=51.6
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHH
Q 047562 65 SKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRI 123 (246)
Q Consensus 65 ~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v 123 (246)
=..++..|+..||+|-.-+|+.|..||..+|... -+|.|+...|.-|.-||.-|-+-+
T Consensus 75 ~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlP-sdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 75 LQKQRVMANVRERQRTQSLNEAFAALRKIIPTLP-SDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCC-ccccccccchhhcccCCchhhhcc
Confidence 3578999999999999999999999999999774 489999999999999999887653
No 24
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.39 E-value=0.024 Score=59.36 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=62.2
Q ss_pred CCCcEEEEeecC--ceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCC---HHHHH
Q 047562 160 LEDSVTVRPCLA--GVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNID---PFELQ 234 (246)
Q Consensus 160 ~~~~V~V~~~~~--~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~---~~~l~ 234 (246)
.++.|.+....+ -..|.|.|.-++ ++|++|.++|.++||+|.+|-|+|.|+++.-+|.+.-.++ ..++ .+.|+
T Consensus 794 ~~~~V~~d~~~s~~~TvlEV~a~DRp-GLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g-~~l~~~~~~~l~ 871 (884)
T PRK05007 794 VPTEVSFLPTHTDRRSYMELIALDQP-GLLARVGKIFADLGISLHGARITTIGERVEDLFILATADR-RALNEELQQELR 871 (884)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCch-HHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCC-CcCCHHHHHHHH
Confidence 355677654322 345667776555 4799999999999999999999999999999999875555 4555 35777
Q ss_pred HHHHHhcCCC
Q 047562 235 QKIMKLTSPS 244 (246)
Q Consensus 235 ~~L~~~I~~~ 244 (246)
++|..++...
T Consensus 872 ~~L~~~l~~~ 881 (884)
T PRK05007 872 QRLTEALNPN 881 (884)
T ss_pred HHHHHHHhhh
Confidence 7787777553
No 25
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.19 E-value=0.0045 Score=60.12 Aligned_cols=63 Identities=17% Similarity=0.323 Sum_probs=51.8
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCC-CChhHHHHHHHHHHHHHHHHHHHH
Q 047562 64 NSKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGK-RSMSDHMNEAVNYIKNLQNRIQKL 126 (246)
Q Consensus 64 ~~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k-~s~~~il~~Ai~YIk~Lq~~v~~L 126 (246)
..+.+|+..|+.||-|-..||+.|..|--+.-...+.+| .++.-||-.|+.-|-.|+|+|.+-
T Consensus 522 REkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 522 REKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 346889999999999999999999999766554434443 577888999999999999999764
No 26
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=95.81 E-value=0.14 Score=35.36 Aligned_cols=50 Identities=26% Similarity=0.352 Sum_probs=39.6
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCC
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDG 224 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~ 224 (246)
.|.|.|..+.| .|.+++.+|.++|+.|.++.+.+.++.....|++.-.++
T Consensus 2 ~l~i~~~d~~g-~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~ 51 (70)
T cd04873 2 VVEVYAPDRPG-LLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDG 51 (70)
T ss_pred EEEEEeCCCCC-HHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCC
Confidence 35666766655 699999999999999999999887777767777766554
No 27
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.73 E-value=0.097 Score=54.98 Aligned_cols=81 Identities=19% Similarity=0.121 Sum_probs=61.6
Q ss_pred CCcEEEEeec--CceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCC-C---HHHHH
Q 047562 161 EDSVTVRPCL--AGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNI-D---PFELQ 234 (246)
Q Consensus 161 ~~~V~V~~~~--~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i-~---~~~l~ 234 (246)
++.|.+.... +..+|.|.+..++ ++|++|..+|..+||+|++|.|++.|++++-+|.+.-.++ ..+ + .++|+
T Consensus 801 ~~~V~i~~~~~~~~T~i~V~a~Drp-GLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g-~~l~~~~~~~~l~ 878 (895)
T PRK00275 801 PTQVTISNDAQRPVTVLEIIAPDRP-GLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADN-QPLSDPQLCSRLQ 878 (895)
T ss_pred CCEEEEEECCCCCeEEEEEEECCCC-CHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCC-CCCCCHHHHHHHH
Confidence 4566666542 3456777776554 5799999999999999999999999999999999976555 333 2 35688
Q ss_pred HHHHHhcCC
Q 047562 235 QKIMKLTSP 243 (246)
Q Consensus 235 ~~L~~~I~~ 243 (246)
++|.+++..
T Consensus 879 ~~L~~~L~~ 887 (895)
T PRK00275 879 DAICEQLDA 887 (895)
T ss_pred HHHHHHHhc
Confidence 888887743
No 28
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.66 E-value=0.11 Score=53.60 Aligned_cols=72 Identities=21% Similarity=0.147 Sum_probs=59.0
Q ss_pred cCceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHhcCC
Q 047562 170 LAGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKLTSP 243 (246)
Q Consensus 170 ~~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I~~ 243 (246)
.+..+|.|.|..++| +|++|..+|..+|+.|++|++.+.+|.++-+|.+.-.++ .....++|++.|.+++..
T Consensus 597 ~~~~~V~V~~~DrpG-Lfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~-~~~~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 597 PHMVEVTVVAPDRRG-LLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFG-SPPDAALLRQDLRRALDG 668 (774)
T ss_pred CCeEEEEEEecCCcc-HHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCC-CcchHHHHHHHHHHHHcC
Confidence 356788888776654 699999999999999999999998888988998875555 445568899999888765
No 29
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=95.59 E-value=0.098 Score=38.03 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=49.0
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+-|.+.+..++| .+..+..+|.++|..+++++.++.++.+...+.+.+.+. +.++|+..|.++
T Consensus 3 ~vItv~G~DrpG-iv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~----~~~~l~~~L~~l 65 (76)
T PF13740_consen 3 LVITVVGPDRPG-IVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPED----SLERLESALEEL 65 (76)
T ss_dssp EEEEEEEE--TT-HHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHH----HHHHHHHHHHHH
T ss_pred EEEEEEecCCCc-HHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcc----cHHHHHHHHHHH
Confidence 345666665554 699999999999999999999999999888888877732 668888888765
No 30
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.57 E-value=0.094 Score=54.78 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=60.0
Q ss_pred CCCcEEEEeecC--ceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCH---HHHH
Q 047562 160 LEDSVTVRPCLA--GVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDP---FELQ 234 (246)
Q Consensus 160 ~~~~V~V~~~~~--~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~---~~l~ 234 (246)
.++.|.+....+ -..|.|.+.-++| +|.+|.++|.++|++|.+|-|+|.|+++.-+|.+.-.++ ..++- .+|+
T Consensus 769 ~~~~V~~dn~~s~~~T~iev~a~DrpG-LL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g-~~l~~~~~~~l~ 846 (854)
T PRK01759 769 VKTEVRFLNEEKQEQTEMELFALDRAG-LLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQG-QALDEEERKALK 846 (854)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchH-HHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCC-CcCChHHHHHHH
Confidence 355666654322 3456677765654 699999999999999999999999999999999876555 34442 6677
Q ss_pred HHHHHhcC
Q 047562 235 QKIMKLTS 242 (246)
Q Consensus 235 ~~L~~~I~ 242 (246)
++|..+++
T Consensus 847 ~~L~~~l~ 854 (854)
T PRK01759 847 SRLLSNLS 854 (854)
T ss_pred HHHHHHhC
Confidence 77776653
No 31
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.56 E-value=0.13 Score=53.79 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=60.9
Q ss_pred CCCcEEEEeec--CceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCH---HHHH
Q 047562 160 LEDSVTVRPCL--AGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDP---FELQ 234 (246)
Q Consensus 160 ~~~~V~V~~~~--~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~---~~l~ 234 (246)
+++.|.+.... +-..|.|.+.-++ ++|++|..+|..+|++|++|.|+|.|++++-+|.+.-.++ ..++. .+|+
T Consensus 782 ~~~~V~~~~~~~~~~t~leI~a~Drp-GLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g-~~~~~~~~~~l~ 859 (869)
T PRK04374 782 FAPRVEFSESAGGRRTRISLVAPDRP-GLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHD-RPLSESARQALR 859 (869)
T ss_pred CCCeEEEeecCCCCeEEEEEEeCCcC-cHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCC-CcCChHHHHHHH
Confidence 45677776543 2355667776554 5799999999999999999999999999999999975554 33332 6777
Q ss_pred HHHHHhcC
Q 047562 235 QKIMKLTS 242 (246)
Q Consensus 235 ~~L~~~I~ 242 (246)
++|..++.
T Consensus 860 ~~L~~~l~ 867 (869)
T PRK04374 860 DALCACLD 867 (869)
T ss_pred HHHHHHhc
Confidence 77777663
No 32
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=95.37 E-value=0.12 Score=35.31 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=44.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHhc
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKLT 241 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I 241 (246)
|.+.|..++| .|.++..+|.++|+.|.++.....++.....+.+...+ ......+.++|.++.
T Consensus 3 v~v~~~drpG-~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 3 VRVIVPDRPG-ILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---EEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEETSTT-HHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---GHGHHHHHHHHHHHT
T ss_pred EEEEcCCCCC-HHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---CCCHHHHHHHHHccc
Confidence 5566776655 69999999999999999999998766222222222222 246678888887753
No 33
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=95.36 E-value=0.0091 Score=53.81 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=53.0
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHH
Q 047562 64 NSKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRI 123 (246)
Q Consensus 64 ~~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v 123 (246)
....+|..-|..||+|=..+|+.|..||.++|......|.++..+|.-|-+||..|++-.
T Consensus 68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 68 ALTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred hhhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 346678888999999999999999999999998666678899999999999999998753
No 34
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.27 E-value=0.12 Score=53.91 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=56.9
Q ss_pred CCcEEEEee--cCceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHH
Q 047562 161 EDSVTVRPC--LAGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIM 238 (246)
Q Consensus 161 ~~~V~V~~~--~~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~ 238 (246)
++.|.+... .+-..|.|.+.-++ ++|++|..+|..+||+|++|.|++.|++++-+|.+.-.+....-..+.|+++|.
T Consensus 773 ~~~V~~~~~~~~~~T~i~V~a~Drp-GLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~ 851 (856)
T PRK03059 773 TPRVDLRPDERGQYYILSVSANDRP-GLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELL 851 (856)
T ss_pred CceEEEEEcCCCCEEEEEEEeCCcc-hHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 445666543 23456777776554 579999999999999999999999999999999883211101112367777777
Q ss_pred HhcC
Q 047562 239 KLTS 242 (246)
Q Consensus 239 ~~I~ 242 (246)
++|.
T Consensus 852 ~~L~ 855 (856)
T PRK03059 852 DALA 855 (856)
T ss_pred HHhc
Confidence 7653
No 35
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.12 E-value=0.2 Score=52.74 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=61.6
Q ss_pred CCcEEEEeec--CceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCC-C---HHHHH
Q 047562 161 EDSVTVRPCL--AGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNI-D---PFELQ 234 (246)
Q Consensus 161 ~~~V~V~~~~--~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i-~---~~~l~ 234 (246)
+|.|.+.... +...|.|.|..++| +|++|..+|.++|++|.+|.+.+.++++.-+|.+.-.++ ..+ + .++|+
T Consensus 830 ~~~V~~~~~~s~~~t~i~I~~~DrpG-Ll~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g-~~i~~~~~~~~l~ 907 (931)
T PRK05092 830 PPRVTIDNEASNRFTVIEVNGRDRPG-LLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFG-LKITNEARQAAIR 907 (931)
T ss_pred CCEEEEeeCCCCCeEEEEEEECCcCc-HHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCC-CcCCCHHHHHHHH
Confidence 4567776543 33566777766654 699999999999999999999999999999999976555 333 2 36788
Q ss_pred HHHHHhcCC
Q 047562 235 QKIMKLTSP 243 (246)
Q Consensus 235 ~~L~~~I~~ 243 (246)
++|.+++..
T Consensus 908 ~~L~~~L~~ 916 (931)
T PRK05092 908 RALLAALAE 916 (931)
T ss_pred HHHHHHhcC
Confidence 888888743
No 36
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=95.10 E-value=0.28 Score=35.70 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=50.6
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
-|.+.|+-++| ..++|-..|.++|..+++++....++.++..+.+.+.. .+.+.|++.|..+
T Consensus 3 iltv~g~Dr~G-iVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~----~~~~~l~~~l~~~ 64 (77)
T cd04893 3 VISALGTDRPG-ILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW----DAIAKLEAALPGL 64 (77)
T ss_pred EEEEEeCCCCh-HHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc----ccHHHHHHHHHHH
Confidence 45677876765 69999999999999999999999999888888777652 3678888887764
No 37
>PRK00194 hypothetical protein; Validated
Probab=95.10 E-value=0.15 Score=37.85 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=49.9
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+-|.+.|..++| .+.+|...|-++|+.|++.+..+.++.++..+.+..... ..+.+.|++.|.++
T Consensus 4 ~~ltv~g~DrpG-iva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~l~~l 68 (90)
T PRK00194 4 AIITVIGKDKVG-IIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISES--KKDFAELKEELEEL 68 (90)
T ss_pred EEEEEEcCCCCC-HHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCC--CCCHHHHHHHHHHH
Confidence 346677876655 699999999999999999998887776666666666542 45678888888764
No 38
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.06 E-value=0.22 Score=51.59 Aligned_cols=77 Identities=9% Similarity=0.050 Sum_probs=56.4
Q ss_pred CCcEEEEeecC--ceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHH
Q 047562 161 EDSVTVRPCLA--GVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIM 238 (246)
Q Consensus 161 ~~~V~V~~~~~--~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~ 238 (246)
++.|.+....+ -..|.|.+.-++ ++|++|..+|..+|++|++|.+++.|++++-+|.+.-.++ ..++-. .+.|+
T Consensus 694 ~~~v~~~~~~~~~~t~i~V~a~Drp-GLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g-~~~~~~--~~~l~ 769 (774)
T PRK03381 694 PPRVLWLDGASPDATVLEVRAADRP-GLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAG-GPLADA--RAAVE 769 (774)
T ss_pred CcEEEEEECCCCCeEEEEEEeCCch-hHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCC-CcCchH--HHHHH
Confidence 34555655433 356677776554 5799999999999999999999999999999999976655 444432 56665
Q ss_pred Hhc
Q 047562 239 KLT 241 (246)
Q Consensus 239 ~~I 241 (246)
+++
T Consensus 770 ~~L 772 (774)
T PRK03381 770 QAV 772 (774)
T ss_pred HHh
Confidence 544
No 39
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=94.92 E-value=0.38 Score=34.62 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=46.7
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC------CeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN------ERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~------~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
|.+.|..+.| .+.+|-+.|.++|+.|.+.+..+.+ +.++..+.+.+. ...+..++++.|..+
T Consensus 2 l~v~g~D~~G-iv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p---~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPG-IVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP---AGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCC-HHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC---CCCCHHHHHHHHHHH
Confidence 4566766655 6999999999999999999998876 444445555554 346888999888764
No 40
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.85 E-value=0.35 Score=50.58 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=61.0
Q ss_pred CCcEEEEee--cCceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEecCCCCCCCH---HHHH
Q 047562 161 EDSVTVRPC--LAGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTK-INERLLHNIESEVNDGGRNIDP---FELQ 234 (246)
Q Consensus 161 ~~~V~V~~~--~~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~-~~~~~l~ti~akv~~~~~~i~~---~~l~ 234 (246)
.+.|.+... .+..+|.|.|..++| +|++|..+|..+||+|++|.+.+ .+|.++-+|.+.-.++ ..++. +.|+
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~DrpG-Lfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g-~~~~~~~~~~l~ 741 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQAN-LFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNG-KLLEFDRRRQLE 741 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCcc-HHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCC-CCCCHHHHHHHH
Confidence 455666553 355778887876655 69999999999999999999877 8999999999875555 34444 3577
Q ss_pred HHHHHhcCC
Q 047562 235 QKIMKLTSP 243 (246)
Q Consensus 235 ~~L~~~I~~ 243 (246)
+.|.+++..
T Consensus 742 ~~L~~aL~~ 750 (854)
T PRK01759 742 QALTKALNT 750 (854)
T ss_pred HHHHHHHcC
Confidence 788777754
No 41
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.72 E-value=0.21 Score=37.06 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=50.4
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
.|.+.|..++| .+++|.+.|-++|+.+++.+..+.++.++..+.+.+.+ ...+.++|++.|..+
T Consensus 3 vl~i~g~D~pG-iva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~--~~~~~~~L~~~l~~l 66 (88)
T cd04872 3 VITVVGKDRVG-IVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE--SNLDFAELQEELEEL 66 (88)
T ss_pred EEEEEcCCCCC-HHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC--CCCCHHHHHHHHHHH
Confidence 46677876655 69999999999999999999888777776666666553 246788999888764
No 42
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.62 E-value=0.29 Score=51.06 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=58.4
Q ss_pred CCcEEEEeecC--ceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCC---HHHHHH
Q 047562 161 EDSVTVRPCLA--GVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNID---PFELQQ 235 (246)
Q Consensus 161 ~~~V~V~~~~~--~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~---~~~l~~ 235 (246)
++.|.+....+ -..|.|.|.-++| +|.+|.++|.++|++|.+|.+++.+++..-+|.+....+ ..++ .+.|++
T Consensus 766 ~~~V~~d~~~s~~~t~~~v~~~DrpG-ll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g-~~~~~~~~~~l~~ 843 (850)
T TIGR01693 766 PPRVTILNTASRKATIMEVRALDRPG-LLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFG-LKLTDEEEQRLLE 843 (850)
T ss_pred CCeEEEccCCCCCeEEEEEEECCccH-HHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCC-CCCCHHHHHHHHH
Confidence 45566655433 3556677765654 699999999999999999999999999999999887665 3444 356666
Q ss_pred HHHHhc
Q 047562 236 KIMKLT 241 (246)
Q Consensus 236 ~L~~~I 241 (246)
+|..++
T Consensus 844 ~L~~~l 849 (850)
T TIGR01693 844 VLAASV 849 (850)
T ss_pred HHHHHh
Confidence 666554
No 43
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.61 E-value=0.23 Score=51.81 Aligned_cols=72 Identities=21% Similarity=0.140 Sum_probs=56.9
Q ss_pred cCceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEEEecCCCCCCC----HHHHHHHHHHhcCC
Q 047562 170 LAGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCIST-KINERLLHNIESEVNDGGRNID----PFELQQKIMKLTSP 243 (246)
Q Consensus 170 ~~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S-~~~~~~l~ti~akv~~~~~~i~----~~~l~~~L~~~I~~ 243 (246)
.+..+|.|.+..+.| +|++|..+|..+||+|++|.|. +.+|.++-+|.+.-.++ ..++ .+.|++.|.+++..
T Consensus 666 ~~~t~i~V~~~Drpg-Lla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g-~~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 666 SGGTEVFIYAPDQPG-LFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFG-SPPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred CCeEEEEEEeCCCCc-HHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCC-CCCCcHHHHHHHHHHHHHHHcC
Confidence 345678887776655 6999999999999999999998 57999999999987766 3443 34577888887754
No 44
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.60 E-value=0.4 Score=50.35 Aligned_cols=81 Identities=15% Similarity=0.109 Sum_probs=60.1
Q ss_pred CCcEEEEee--cCceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEecCCCCCCCH---HHHH
Q 047562 161 EDSVTVRPC--LAGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI-NERLLHNIESEVNDGGRNIDP---FELQ 234 (246)
Q Consensus 161 ~~~V~V~~~--~~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~-~~~~l~ti~akv~~~~~~i~~---~~l~ 234 (246)
.|.|.+... .+..+|.|.|..+.| +|++|..+|..+||+|++|.|.+. +|.++-+|.+.-.++ ..++. ++|+
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~DrpG-Lfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g-~~~~~~~~~~I~ 765 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPDRPY-LFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDG-SPLSQDRHQVIR 765 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCcC-HHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCC-CCCCHHHHHHHH
Confidence 445666553 356788887765554 699999999999999999998875 568888888876655 34443 4478
Q ss_pred HHHHHhcCC
Q 047562 235 QKIMKLTSP 243 (246)
Q Consensus 235 ~~L~~~I~~ 243 (246)
+.|.+++..
T Consensus 766 ~~L~~aL~~ 774 (884)
T PRK05007 766 KALEQALTQ 774 (884)
T ss_pred HHHHHHHcC
Confidence 888887754
No 45
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.18 Score=52.13 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=59.2
Q ss_pred CCCCCcEEEEeec--CceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHH
Q 047562 158 INLEDSVTVRPCL--AGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQ 235 (246)
Q Consensus 158 ~~~~~~V~V~~~~--~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~ 235 (246)
+.++|.|++..-. ....+.+.+.-+.| +|+.+-.+|.+++|++++|.|+++|.++.-+|.+....+ ..++ .++++
T Consensus 775 f~i~p~v~i~~t~~~~~t~lEv~alDRpG-LLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~-~~l~-~~~~q 851 (867)
T COG2844 775 FPIPPRVTILPTASNDKTVLEVRALDRPG-LLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADG-QALN-AELRQ 851 (867)
T ss_pred eccCCceeeccccCCCceEEEEEeCCccc-HHHHHHHHHHhcccceeeeeeccccccceeEEEEecccc-ccCC-HHHHH
Confidence 3456788886643 34556777766655 699999999999999999999999999998888887766 4453 34444
Q ss_pred HHHH
Q 047562 236 KIMK 239 (246)
Q Consensus 236 ~L~~ 239 (246)
.|.+
T Consensus 852 ~l~~ 855 (867)
T COG2844 852 SLLQ 855 (867)
T ss_pred HHHH
Confidence 4443
No 46
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=94.43 E-value=0.21 Score=36.20 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=45.4
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI--NERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~--~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
+.+.|.+..++| +|.+|..++.+.|+.|.+.++... ++.+...|.+++.+. -....|-++|++
T Consensus 7 ~~l~i~~~dr~G-lL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~---~~L~~ii~~L~~ 71 (80)
T PF13291_consen 7 VRLRIEAEDRPG-LLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDL---EHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEE--TT-HHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSH---HHHHHHHHHHCT
T ss_pred EEEEEEEEcCCC-HHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCH---HHHHHHHHHHHC
Confidence 345555655655 699999999999999999999984 677888999999865 344455555543
No 47
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.43 E-value=0.45 Score=34.00 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=45.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
|.+.|.-++| .+.+|.+.|-++|+.+++.+..+..+.-.+.+.+++.-....++...|++.|..+
T Consensus 2 i~v~g~D~~G-iv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 2 LTLSCPDRPG-IVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred EEEEcCCCCC-HHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4566766655 6999999999999999999987632222244445554431136889999888764
No 48
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=94.28 E-value=0.092 Score=47.24 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=52.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHH
Q 047562 67 KMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRI 123 (246)
Q Consensus 67 ~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v 123 (246)
.+|..-+..||+|=..+|..|..||..+|......|.|+-+.|.-|-.||--|-..+
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 567778999999999999999999999999988889999999999999998887764
No 49
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.91 E-value=0.46 Score=49.74 Aligned_cols=72 Identities=7% Similarity=0.067 Sum_probs=55.6
Q ss_pred cCceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEEEecCCCCCC---CHHHHHHHHHHhcCC
Q 047562 170 LAGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCIST-KINERLLHNIESEVNDGGRNI---DPFELQQKIMKLTSP 243 (246)
Q Consensus 170 ~~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S-~~~~~~l~ti~akv~~~~~~i---~~~~l~~~L~~~I~~ 243 (246)
.+..+|.|.|..++ ++|+++..+|..+||.|++|.+. +.+|.++-+|.+.-.++ ..- ..++|++.|.+++..
T Consensus 676 ~~~~~v~i~~~d~~-gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~-~~~~~~~~~~i~~~l~~~l~~ 751 (856)
T PRK03059 676 GEGLQVMVYTPDQP-DLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEE-DVHYRDIINLVEHELAERLAE 751 (856)
T ss_pred CCeEEEEEEecCCC-cHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCC-CCChHHHHHHHHHHHHHHHcC
Confidence 35688988887655 57999999999999999999995 47889999999875544 211 246678888887765
No 50
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.85 E-value=0.67 Score=33.32 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=46.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
|.+.+.-+ ++...++-++|.++|+.+.+.+.++.++.+...+.+.+. ...+.++|++.|..+
T Consensus 2 vtv~G~Dr-pGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p---~~~~~~~l~~~l~~l 63 (75)
T cd04870 2 ITVTGPDR-PGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP---DSADSEALLKDLLFK 63 (75)
T ss_pred EEEEcCCC-CCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC---CCCCHHHHHHHHHHH
Confidence 34555444 457999999999999999999988888775455555543 346889999988765
No 51
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.77 E-value=0.59 Score=32.94 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=44.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN-ERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~-~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
+.|.+..++| .|.+|+.+|.+.|..|.+.+..... +.....|.+++.+. -....+.++|++
T Consensus 2 l~v~~~d~~g-~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~---~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPG-MLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSE---EHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCc-hHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCH---HHHHHHHHHHhc
Confidence 3444555655 6999999999999999999987764 56666777787765 345566666664
No 52
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.37 E-value=0.75 Score=48.45 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=54.8
Q ss_pred CceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEEEecCCCCCC--C---HHHHHHHHHHhcCC
Q 047562 171 AGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCIST-KINERLLHNIESEVNDGGRNI--D---PFELQQKIMKLTSP 243 (246)
Q Consensus 171 ~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S-~~~~~~l~ti~akv~~~~~~i--~---~~~l~~~L~~~I~~ 243 (246)
+..+|.|.|..++ ++|+++..+|..+||+|++|.+. +-+|.++-+|.+.-.++ ..+ + .++|++.|.+++..
T Consensus 703 ~~t~V~V~~~Drp-gLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g-~~~~~~~~r~~~i~~~L~~~L~~ 779 (895)
T PRK00275 703 GGTQIFIYAPDQH-DFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDG-EPIGDNPARIEQIREGLTEALRN 779 (895)
T ss_pred CeEEEEEEeCCCC-cHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCC-CCccchHHHHHHHHHHHHHHHcC
Confidence 5678888887655 57999999999999999999974 46788888998876655 332 2 34577888887654
No 53
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.92 E-value=0.68 Score=32.65 Aligned_cols=63 Identities=21% Similarity=0.173 Sum_probs=44.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI-NERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~-~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+.+.+..++| .|.+|+..|.++|+.|...+.+.. ++..-..|.+++.+. ......|.++|+++
T Consensus 3 l~i~~~d~~g-~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~--~~~l~~l~~~L~~i 66 (76)
T cd04888 3 LSLLLEHRPG-VLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM--NGDIDELLEELREI 66 (76)
T ss_pred EEEEecCCCc-hHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch--HHHHHHHHHHHhcC
Confidence 4455555555 699999999999999999987653 355556666776654 23567777777753
No 54
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.73 E-value=0.94 Score=30.92 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=40.4
Q ss_pred EEecCCCCCcHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 177 INTSFRKGIPLSQVVALLAEEGLTVVNCISTKI-----NERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 177 I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~-----~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
|.+..++| .|.+|+.+|.+.|+.|.+...... ++.....|++++.+. -....+.++|.+
T Consensus 3 v~~~d~~G-~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~---~~l~~l~~~l~~ 66 (73)
T cd04886 3 VELPDRPG-QLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGA---EHIEEIIAALRE 66 (73)
T ss_pred EEeCCCCC-hHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 44455555 699999999999999998887653 345555666666432 344566666654
No 55
>PRK04374 PII uridylyl-transferase; Provisional
Probab=92.68 E-value=0.77 Score=48.23 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=56.7
Q ss_pred cCceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHhcCCC
Q 047562 170 LAGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTK-INERLLHNIESEVNDGGRNIDPFELQQKIMKLTSPS 244 (246)
Q Consensus 170 ~~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~-~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I~~~ 244 (246)
.+..+|.|.|..++ ++|++|..+|..+||.|++|.+.+ .+|.++-+|.+.-.++...-...+|++.|.+++...
T Consensus 688 ~~~~~v~v~~~d~~-gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 688 NDALEVFVYSPDRD-GLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGD 762 (869)
T ss_pred CCeEEEEEEeCCCc-cHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCC
Confidence 35688888887555 579999999999999999999887 688999999986544411223466888888887653
No 56
>PRK05092 PII uridylyl-transferase; Provisional
Probab=92.55 E-value=1 Score=47.49 Aligned_cols=79 Identities=20% Similarity=0.150 Sum_probs=58.8
Q ss_pred CcEEEEee--cCceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEecCCCCCC-C---HHHHH
Q 047562 162 DSVTVRPC--LAGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTK-INERLLHNIESEVNDGGRNI-D---PFELQ 234 (246)
Q Consensus 162 ~~V~V~~~--~~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~-~~~~~l~ti~akv~~~~~~i-~---~~~l~ 234 (246)
+.|.++.. .+..+|.|.|.-+. ++|.+|..+|..+|++|++|.+.+ .+|.++-+|.+.-.++ ... + .+.|+
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~-GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g-~~~~~~~~~~~l~ 797 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHP-GLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFG-RDEDEPRRLARLA 797 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCC-cHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCC-CCCCCHHHHHHHH
Confidence 45656553 35688888887665 469999999999999999999877 6888888888875544 222 2 56678
Q ss_pred HHHHHhcC
Q 047562 235 QKIMKLTS 242 (246)
Q Consensus 235 ~~L~~~I~ 242 (246)
+.|.+++.
T Consensus 798 ~~L~~~l~ 805 (931)
T PRK05092 798 KAIEDALS 805 (931)
T ss_pred HHHHHHHc
Confidence 88877764
No 57
>PRK04435 hypothetical protein; Provisional
Probab=91.79 E-value=1 Score=37.11 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=50.8
Q ss_pred cCceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 170 LAGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTK-INERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 170 ~~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~-~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+..+.+.+.+..++| .|++|+..|.+.|+.|+..+.+. .++....+|.+++.+. .....+|.++|.++
T Consensus 67 ~r~vtL~i~l~Dr~G-lLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~--~~~L~~Li~~L~~i 135 (147)
T PRK04435 67 GKIITLSLLLEDRSG-TLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM--EGDIDELLEKLRNL 135 (147)
T ss_pred CcEEEEEEEEecCCC-HHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh--HHHHHHHHHHHHcC
Confidence 455666666666655 69999999999999999988665 4566667788888665 34677888888753
No 58
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=90.75 E-value=1.6 Score=28.55 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=40.6
Q ss_pred EEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 176 AINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN-ERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 176 ~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~-~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.|.+..+.+ .+.++++.|.++++++.+......+ +.....|..++.+. .+...+.+.|..
T Consensus 2 ~v~~~~~~~-~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~ 62 (71)
T cd04876 2 RVEAIDRPG-LLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDL---EHLARIMRKLRQ 62 (71)
T ss_pred EEEEeccCc-HHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCH---HHHHHHHHHHhC
Confidence 344555544 6999999999999999999887655 44445566665543 345666666654
No 59
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.59 E-value=2.5 Score=30.43 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=49.6
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
.|.|.|+.+-| +=.++...+-+.||.|....+++.|.--+..|-+.-......+.-+-|+++|.++
T Consensus 2 vitvnCPDktG-Lgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTG-LGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccC-cccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 47888987765 4789999999999999999999855544444545444432457789999999875
No 60
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=89.66 E-value=3 Score=25.59 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=26.4
Q ss_pred EEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC
Q 047562 176 AINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN 210 (246)
Q Consensus 176 ~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~ 210 (246)
.+.+....+ .+.+++..|..+|+.+........+
T Consensus 2 ~i~~~~~~~-~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 2 TVSGPDRPG-LLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred EEEecCCCc-hHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 344555544 6999999999999999999876643
No 61
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=88.79 E-value=4.3 Score=28.79 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=40.5
Q ss_pred ecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 179 TSFRKGIPLSQVVALLAEEGLTVVNCISTKINE-RLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 179 c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~-~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
...+.| .|++++..|.++|+.+++..+....+ .--|.|.+.+.+.........+.+.|.+
T Consensus 6 l~d~pG-~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 6 LKNKPG-ALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred eCCcCC-HHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 334444 69999999999999999998777554 4447777777653112344555555554
No 62
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=87.94 E-value=2.4 Score=30.26 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=40.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
+.|.+..+.| .|.+|+.++.++|..+.+.++.+. +. ..|..++.+. -..+.|.++|++
T Consensus 3 l~I~~~dr~G-ll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~~~---~~L~~li~~L~~ 60 (74)
T cd04877 3 LEITCEDRLG-ITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTIEF---EKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEccch-HHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEecCH---HHHHHHHHHHhC
Confidence 5566666655 699999999999999999998764 43 3355555543 245666666654
No 63
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.57 E-value=7.8 Score=26.21 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=39.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN-ERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~-~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.+.+.+..+.| .|.+++..|.++++.|.+.+....+ +... +...+.+. -....+.++|.+
T Consensus 2 ~l~i~~~d~~g-~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~--~~i~~~~~---~~~~~~~~~L~~ 62 (72)
T cd04874 2 ALSIIAEDKPG-VLRDLTGVIAEHGGNITYTQQFIEREGKAR--IYMELEGV---GDIEELVEELRS 62 (72)
T ss_pred eEEEEeCCCCC-hHHHHHHHHHhCCCCEEEEEEeccCCCeEE--EEEEEecc---ccHHHHHHHHhC
Confidence 35566665555 6999999999999999988876643 3332 23444433 244566666654
No 64
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=86.32 E-value=8.2 Score=27.79 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=33.5
Q ss_pred cCCCCCcHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecCC
Q 047562 180 SFRKGIPLSQVVALLAEEGLTVVNCISTKIN-ERLLHNIESEVNDG 224 (246)
Q Consensus 180 ~~~~~~~L~~Il~aLeelgLdVv~as~S~~~-~~~l~ti~akv~~~ 224 (246)
..+ ++.|++++..|.++|+.+++..+.... +...+.|++.....
T Consensus 9 ~d~-~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~ 53 (80)
T cd04905 9 PNK-PGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH 53 (80)
T ss_pred CCC-CCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC
Confidence 344 446999999999999999999866653 35558888877753
No 65
>PRK08577 hypothetical protein; Provisional
Probab=85.90 E-value=8.5 Score=30.95 Aligned_cols=65 Identities=28% Similarity=0.414 Sum_probs=45.5
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN--ERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~--~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+.+.|.+..+.| .|.+++..|.+++..+.+.+..... +.....+.+.+.+. .....++.++|.++
T Consensus 57 ~~I~V~~~Dr~G-vLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~--~~~l~~l~~~L~~l 123 (136)
T PRK08577 57 VEIELVVEDRPG-VLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS--DIDLEELEEELKKL 123 (136)
T ss_pred EEEEEEEcCCCC-HHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc--hhhHHHHHHHHHcC
Confidence 445566655555 6999999999999999988876643 33444566677653 24567888887653
No 66
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.34 E-value=7.4 Score=29.50 Aligned_cols=66 Identities=9% Similarity=0.037 Sum_probs=43.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEecCCCCCCCHHHHHHHHHHhc
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLL-HNIESEVNDGGRNIDPFELQQKIMKLT 241 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l-~ti~akv~~~~~~i~~~~l~~~L~~~I 241 (246)
-+.+....+.| .|.++|..|...|+.+.+..+-...+... |.|.+.+... ..-....+-..|.+.|
T Consensus 16 slif~l~~~pG-sL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~-~~~~~~~~l~~L~~~~ 82 (90)
T cd04931 16 SLIFSLKEEVG-ALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK-SAPALDPIIKSLRNDI 82 (90)
T ss_pred EEEEEcCCCCc-HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-CCHHHHHHHHHHHHHh
Confidence 34444555545 69999999999999999999888654433 7888877653 2222233444444433
No 67
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=85.18 E-value=7.7 Score=35.46 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=47.9
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTK--INERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~--~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+.|.+.|.-+.| ....|-++|.++|+.+.+.+.++ .++.+.-.+.+.+.. ...+.++|++.|.++
T Consensus 7 ~vitv~G~DrpG-IVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~--~~~~~~~L~~~L~~l 73 (286)
T PRK06027 7 YVLTLSCPDRPG-IVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDG--LIFNLETLRADFAAL 73 (286)
T ss_pred EEEEEECCCCCc-HHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCC--CCCCHHHHHHHHHHH
Confidence 456677766655 69999999999999999999998 777543444444422 245688999888754
No 68
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.04 E-value=4.9 Score=27.64 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=40.6
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee-C-CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI-N-ERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~-~-~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.+.|.+..+.| .|.+++..|.+.|..+.+.+.... + +.....+..++.+. -...++.++|++
T Consensus 2 yl~i~~~d~~g-~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPG-VLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSE---AALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCc-HHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCH---HHHHHHHHHHHc
Confidence 35565655555 699999999999999999887654 2 44444555554432 344555566654
No 69
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=84.89 E-value=7.3 Score=35.68 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=48.3
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+.|.+.|.-+.| ...+|-+.|-++|+.+.+.+..+-.+.-++++.+++.-. ...+.++|+++|..+
T Consensus 8 ~vitv~G~DrpG-IVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~~~~~~L~~~L~~l 73 (286)
T PRK13011 8 FVLTLSCPSAAG-IVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EGLDEDALRAGFAPI 73 (286)
T ss_pred EEEEEEeCCCCC-HHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CCCCHHHHHHHHHHH
Confidence 456777876655 699999999999999999998742222233456666544 357899999998764
No 70
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=83.59 E-value=8.1 Score=27.73 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=34.5
Q ss_pred ecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEecC
Q 047562 179 TSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLL-HNIESEVND 223 (246)
Q Consensus 179 c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l-~ti~akv~~ 223 (246)
...+.| .|.++|..|...|+.+.+..+-...+... |.|.+.+..
T Consensus 7 l~~~pG-~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 7 LKEEVG-ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred eCCCCc-HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 344445 59999999999999999999888665543 788877775
No 71
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=83.41 E-value=10 Score=34.60 Aligned_cols=62 Identities=11% Similarity=0.229 Sum_probs=46.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN--ERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~--~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
|++.|.-+.| ..++|-..|-++|+.+++++.+... +.++-.+.+.+.+ ..++.++|++.|..
T Consensus 3 itv~g~D~~G-IVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~--~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 3 LLVSCPDQKG-LVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEG--FRLEESSLLAAFKS 66 (280)
T ss_pred EEEECCCCCC-hHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCC--CCCCHHHHHHHHHH
Confidence 5677876665 5999999999999999999988743 5554444444433 25788999998887
No 72
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=81.54 E-value=12 Score=24.90 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=39.1
Q ss_pred EEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 177 INTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN--ERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 177 I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~--~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+....+. +.+.+++..|.+.|+.|.+..+...+ +.....|.+ .+. ....+.++|+++
T Consensus 4 v~~~d~~-g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~~----~~~~l~~~l~~~ 62 (71)
T cd04879 4 IVHKDVP-GVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DSP----VPEEVLEELKAL 62 (71)
T ss_pred EEecCCC-CHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CCC----CCHHHHHHHHcC
Confidence 3444454 46999999999999999999877643 555455544 322 356777777654
No 73
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=80.89 E-value=11 Score=34.61 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=47.2
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCIST--KINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S--~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+-|.+.|.-+.| ..++|-..|-++|+.+++++-. +..+.+|-.+....... ..++.++|+++|.++
T Consensus 10 ~iitv~G~Dr~G-IVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~-~~~~~~~l~~~l~~l 77 (289)
T PRK13010 10 YVLTLACPSAPG-IVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSA-EAASVDTFRQEFQPV 77 (289)
T ss_pred EEEEEECCCCCC-cHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCC-CCCCHHHHHHHHHHH
Confidence 456777877766 5999999999999999999975 34455554433332232 357889999988764
No 74
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.15 E-value=10 Score=39.66 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=56.6
Q ss_pred EEEeecCceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEecCCCCCCCH---HHHHHHHHHh
Q 047562 165 TVRPCLAGVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTK-INERLLHNIESEVNDGGRNIDP---FELQQKIMKL 240 (246)
Q Consensus 165 ~V~~~~~~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~-~~~~~l~ti~akv~~~~~~i~~---~~l~~~L~~~ 240 (246)
.++...++.+|.|.|+-.+ .+|+.+..++...|++|++|++-+ .+|..+-||.+.--++ ..++. ..+.+.|.++
T Consensus 677 ~~r~~~~~teV~V~a~d~p-~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g-~~~~~dr~~~~~~~l~~~ 754 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDRP-RLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDG-FPVEEDRRAALRGELIEA 754 (867)
T ss_pred eecccCCceEEEEEcCCCc-cHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCC-CccchhHHHHHHHHHHHH
Confidence 4445568899999987554 579999999999999999999766 6888998888764444 33443 3444556666
Q ss_pred cCCC
Q 047562 241 TSPS 244 (246)
Q Consensus 241 I~~~ 244 (246)
+.++
T Consensus 755 l~s~ 758 (867)
T COG2844 755 LLSG 758 (867)
T ss_pred HhcC
Confidence 5443
No 75
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.94 E-value=15 Score=25.29 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=37.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC-C-eEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN-E-RLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~-~-~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
+.+.+..+.| .|.+++..|.++|+.+......... + .-...| .++.. . +.+.+.+.|.+
T Consensus 4 ~~v~~~d~~G-~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i--~v~~~--~-~~~~~~~~L~~ 64 (69)
T cd04909 4 LYVDVPDEPG-VIAEVTQILGDAGISIKNIEILEIREGIGGILRI--SFKTQ--E-DRERAKEILKE 64 (69)
T ss_pred EEEEcCCCCC-HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEE--EECCH--H-HHHHHHHHHHH
Confidence 4555555555 6999999999999999988755542 2 222233 33322 1 55677777665
No 76
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.63 E-value=19 Score=24.80 Aligned_cols=59 Identities=12% Similarity=0.345 Sum_probs=38.9
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI--NERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~--~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.+.+....+.| .|.++++.|.++|+.+.+...... ++.....|+....+ .+.+.+.|.+
T Consensus 3 ~~~v~~~d~pG-~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~------~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPG-QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN------PRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCC-HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC------HHHHHHHHHH
Confidence 44555555545 699999999999999988765443 34555566655422 2377777764
No 77
>PRK07334 threonine dehydratase; Provisional
Probab=78.58 E-value=11 Score=35.83 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=47.1
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI-----NERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~-----~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+.|.|.+..++| +|.+|+..|.+.++.|.+.++... ++.....|..++.+- -....|.++|+++
T Consensus 327 v~l~I~~~dr~G-lL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~---~~L~~vi~~Lr~~ 395 (403)
T PRK07334 327 ARLRVDIRDRPG-ALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDA---AHLQEVIAALRAA 395 (403)
T ss_pred EEEEEEeCCCCC-HHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCH---HHHHHHHHHHHHc
Confidence 566666766655 699999999999999999998754 456556777777754 3456677777653
No 78
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.45 E-value=20 Score=25.04 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=37.1
Q ss_pred cCCCCCcHHHHHHHHHhCCceEEEEEEEee--C-CeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 180 SFRKGIPLSQVVALLAEEGLTVVNCISTKI--N-ERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 180 ~~~~~~~L~~Il~aLeelgLdVv~as~S~~--~-~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
..++| .|.+++..|.++|..|++...... + +.-...+++..+.. . ..+.|.++|.+.
T Consensus 7 ~d~pG-~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~-~--~~~~i~~~L~~~ 66 (72)
T cd04884 7 EDKPG-TLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDR-S--KENELIEELKAK 66 (72)
T ss_pred cCCCc-cHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecc-h--HHHHHHHHHhCc
Confidence 34444 699999999999999999876654 2 23334555544322 2 266777777554
No 79
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.54 E-value=17 Score=24.34 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=32.8
Q ss_pred cCCCCCcHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 180 SFRKGIPLSQVVALLAEEGLTVVNCISTKIN--ERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 180 ~~~~~~~L~~Il~aLeelgLdVv~as~S~~~--~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
..++| .|.+++..|.++|+.|.+....... +.....|+ +++ .+.+.+.|.+
T Consensus 7 ~d~pG-~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~--ve~------~~~~~~~L~~ 59 (65)
T cd04882 7 PDKPG-GLHEILQILSEEGINIEYMYAFVEKKGGKALLIFR--TED------IEKAIEVLQE 59 (65)
T ss_pred CCCCc-HHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEE--eCC------HHHHHHHHHH
Confidence 44444 6999999999999999877654433 34333333 332 4466666654
No 80
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=75.80 E-value=20 Score=36.96 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=57.8
Q ss_pred CceEEEEEe-cCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHhcCCC
Q 047562 171 AGVEVAINT-SFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKLTSPS 244 (246)
Q Consensus 171 ~~~eI~I~c-~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I~~~ 244 (246)
.+..|+|.. +...| .|+++..+|--+|+.|.+|++.+ +|.....|.+...-+ ...++..+.|.++.++.+.
T Consensus 545 ~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~ 616 (693)
T PRK00227 545 EDGFFTVIWHGDYPR-ELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGP-QDFDPQEFLQAYKSGVYSE 616 (693)
T ss_pred cCCeEEEEecCCccc-HHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCC-CCCChHHHHHHHHHhhcCC
Confidence 445666654 55544 69999999999999999999998 888888888887766 6789999999999887654
No 81
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=75.34 E-value=20 Score=23.93 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=38.5
Q ss_pred EEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 176 AINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI--NERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 176 ~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~--~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.|....+.| .|.+++..|.++|+.+.+.+.... ++.....|...+ . . -....+..+|++
T Consensus 4 ~i~~~d~~g-~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~l~~~l~~ 64 (72)
T cd04878 4 SVLVENEPG-VLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG--D-D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEcCCCc-HHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC--C-H-HHHHHHHHHHhC
Confidence 344444544 699999999999999999887654 344445555554 2 2 345566666654
No 82
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=73.92 E-value=17 Score=29.96 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=50.0
Q ss_pred CceEEEE--EecCCCCCcHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 171 AGVEVAI--NTSFRKGIPLSQVVALLAEEGLTVVNCISTK-INERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 171 ~~~eI~I--~c~~~~~~~L~~Il~aLeelgLdVv~as~S~-~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
.+-.+.+ .-..+.| .|+++|+++-+.++.|++.+=+- .+|+.-.||....... .-+.+.|..+|+++
T Consensus 69 k~ri~TL~l~ledr~G-~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm--~~~V~~ii~kl~k~ 138 (150)
T COG4492 69 KERIITLSLSLEDRVG-ILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSM--EKDVDKIIEKLRKV 138 (150)
T ss_pred cceEEEEEEEEhhhhh-hHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhh--hhhHHHHHHHHhcc
Confidence 3444444 3344545 69999999999999999988555 7888877777777643 67888999988764
No 83
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=73.55 E-value=2.9 Score=42.70 Aligned_cols=47 Identities=32% Similarity=0.456 Sum_probs=38.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC----cCCCCChhHHHHHHHHHHH
Q 047562 68 MKIMRRDIERHRRQEMSTLYRSLRSLLPLEY----LKGKRSMSDHMNEAVNYIK 117 (246)
Q Consensus 68 ~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~----~~~k~s~~~il~~Ai~YIk 117 (246)
+|+.-..+=|-||.|=|.-|..|.-+||... ..||+|| +.-||.|++
T Consensus 46 rkEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSi---mRLtISyLR 96 (768)
T KOG3558|consen 46 RKEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASI---MRLTISYLR 96 (768)
T ss_pred HhhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHH---HHHHHHHHH
Confidence 3556667789999999999999999999644 3367777 999999986
No 84
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=73.55 E-value=3.1 Score=40.17 Aligned_cols=43 Identities=28% Similarity=0.439 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCC----cCCCCChhHHHHHHHHHHHH
Q 047562 73 RDIERHRRQEMSTLYRSLRSLLPLEY----LKGKRSMSDHMNEAVNYIKN 118 (246)
Q Consensus 73 ~~~ER~RR~~mn~~f~~LrsllP~~~----~~~k~s~~~il~~Ai~YIk~ 118 (246)
+-.-|.||++=|--|..|..+||... ..||+|+ +.-+..|||-
T Consensus 6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasi---iRLtTsYlKm 52 (598)
T KOG3559|consen 6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASI---IRLTTSYLKM 52 (598)
T ss_pred hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhh---hhHHHHHHHH
Confidence 34568999999999999999999754 3467766 9999999973
No 85
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.46 E-value=24 Score=23.52 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=36.6
Q ss_pred EEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 176 AINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI--NERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 176 ~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~--~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.+.+..+.| .|.+++..|.++|+.+.+...... ++..... ..+.+. ....+.++|++
T Consensus 3 ~i~~~d~~g-~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~----~~~~~i~~l~~ 61 (71)
T cd04903 3 IVVHKDKPG-AIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP----IDEEVIEEIKK 61 (71)
T ss_pred EEEeCCCCC-hHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC----CCHHHHHHHHc
Confidence 344444544 699999999999999998876652 3443333 344432 45567777765
No 86
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=73.16 E-value=22 Score=39.94 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=51.8
Q ss_pred ceEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC---C--eEEEEEEEEecCCCCCCCHHHHHHHHHHhcC
Q 047562 172 GVEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN---E--RLLHNIESEVNDGGRNIDPFELQQKIMKLTS 242 (246)
Q Consensus 172 ~~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~---~--~~l~ti~akv~~~~~~i~~~~l~~~L~~~I~ 242 (246)
.+.++|..... ...|+++|-.|+++||.|+...--.+. + ..+|.|.+....+ ...+...+.+++.+++.
T Consensus 489 ~~~lkiy~~~~-~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~-~~~~~~~~~~~~~~a~~ 562 (1528)
T PF05088_consen 489 RLRLKIYHPGE-PLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDG-DALDLDDIRERFEEAFE 562 (1528)
T ss_pred eEEEEEEcCCC-CcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCC-ccccHHHHHHHHHHHHH
Confidence 46667765434 457999999999999999998744432 2 3568999988887 56888888888877653
No 87
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.22 E-value=21 Score=25.86 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=34.3
Q ss_pred cCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEEecCC
Q 047562 180 SFRKGIPLSQVVALLAEEGLTVVNCISTKINER-LLHNIESEVNDG 224 (246)
Q Consensus 180 ~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~-~l~ti~akv~~~ 224 (246)
..+.| .|+++|..|+..|+.+.+..+-...+. --|.|.+.+.+.
T Consensus 8 ~~~~g-~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~ 52 (74)
T cd04929 8 KNEVG-GLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD 52 (74)
T ss_pred CCCCc-HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 44444 699999999999999999998776443 348888888755
No 88
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=72.12 E-value=4 Score=34.30 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHH
Q 047562 74 DIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQN 121 (246)
Q Consensus 74 ~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~ 121 (246)
..||+|-+++++.|.-|+.|+|.....+|+-+ -.|.-+-+||..|.|
T Consensus 28 ~~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~-ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 28 RKERGRKRRLSDASTLLGKLEPGSPADGKRGK-KTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHHhHHhhhhhhhhhccccCCCCCCcccccc-cccccCCCchhhHHH
Confidence 36999999999999999999997664433322 225556667766544
No 89
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=69.95 E-value=17 Score=25.45 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHhc
Q 047562 185 IPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKLT 241 (246)
Q Consensus 185 ~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I 241 (246)
+.|.+|+..+..-|+.+-+.++...++--++.|...+.+. .-.++.|...|.+++
T Consensus 4 GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~--~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 4 GVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD--DREIEQLVKQLEKLI 58 (63)
T ss_dssp THHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---CCHHHHHHHHHHCST
T ss_pred HHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC--chhHHHHHHHHhccC
Confidence 4699999999999999999998884333333444444443 246677888887765
No 90
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=67.22 E-value=27 Score=23.00 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=29.8
Q ss_pred ecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEE
Q 047562 179 TSFRKGIPLSQVVALLAEEGLTVVNCISTKIN-ERLLHNIESE 220 (246)
Q Consensus 179 c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~-~~~l~ti~ak 220 (246)
...++| .|.++++.|.+.|+.|.+..+...+ +..+..|...
T Consensus 5 ~~d~~G-~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 5 VENKPG-RLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred eCCCCC-hHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 344544 6999999999999999888876654 5555555543
No 91
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=66.65 E-value=39 Score=23.18 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=36.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
+.|....++| .|.+|++.|.+.|+.|.+.-+...++. ..++....+ .+.+.+.|.+
T Consensus 4 i~v~v~d~pG-~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~~~------~~~~~~~L~~ 59 (66)
T cd04908 4 LSVFLENKPG-RLAAVTEILSEAGINIRALSIADTSEF--GILRLIVSD------PDKAKEALKE 59 (66)
T ss_pred EEEEEcCCCC-hHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEECC------HHHHHHHHHH
Confidence 3344444545 699999999999999999887665553 445555522 3456666654
No 92
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=65.14 E-value=14 Score=28.29 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=47.7
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
|+|.. +.+.+..+.+-.+|-++|+.+++.+=+..+|.+-..+.+..... ..+...+++.|...
T Consensus 6 ITV~G-kDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~--~~d~~~lr~~l~~~ 68 (90)
T COG3830 6 ITVIG-KDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKE--VVDFAALRDELAAE 68 (90)
T ss_pred EEEEc-CCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChH--hccHHHHHHHHHHH
Confidence 45544 45555799999999999999999998888887755555555544 67888888877654
No 93
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=64.86 E-value=7.8 Score=26.49 Aligned_cols=55 Identities=16% Similarity=0.045 Sum_probs=35.6
Q ss_pred EecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 178 NTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 178 ~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.+..+ ++.|.+++..|.+.|..+...+....++..+..|...+. ....+.++|++
T Consensus 5 ~~~d~-~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~------~l~~li~~l~~ 59 (69)
T cd04901 5 IHKNV-PGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE------VSEELLEALRA 59 (69)
T ss_pred EecCC-CcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC------CCHHHHHHHHc
Confidence 34444 457999999999999999777654444555444443333 44566666664
No 94
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.74 E-value=31 Score=27.25 Aligned_cols=49 Identities=6% Similarity=-0.065 Sum_probs=36.7
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEecCC
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLL-HNIESEVNDG 224 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l-~ti~akv~~~ 224 (246)
+.+....+.| .|.++|..|..+|+.+.+..+-...+... |.|.+.+...
T Consensus 44 lifsl~~~pG-sL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~ 93 (115)
T cd04930 44 LLFSLKEGFS-SLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH 93 (115)
T ss_pred EEEEeCCCCc-HHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC
Confidence 4444444444 69999999999999999999887655443 7888887754
No 95
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=62.41 E-value=32 Score=35.80 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=46.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI--NERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~--~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
.|.|.+..+.| +|.+|..+|.+.++.|.++++... ++.....|.++|.+. -....|..+|+++
T Consensus 668 ~I~I~~~Dr~G-lL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~---~~L~~l~~~L~~i 732 (743)
T PRK10872 668 VVRVTANDRSG-LLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNL---QVLGRVLGKLNQV 732 (743)
T ss_pred EEEEEEcCCCC-HHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCH---HHHHHHHHHHhcC
Confidence 44555665655 699999999999999999998764 455556788888865 3556666666653
No 96
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=62.36 E-value=13 Score=30.95 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=25.3
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 047562 64 NSKKMKIMRRDIERHRRQEMSTLYRSLRSL 93 (246)
Q Consensus 64 ~~~~~~~~h~~~ER~RR~~mn~~f~~Lrsl 93 (246)
+....|++.+..||+||.--...|.-||.+
T Consensus 7 pt~kErEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 7 PTWKERENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred ccHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445678888999999999889999999974
No 97
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=61.64 E-value=6.3 Score=39.44 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhcCCCC----CcCCCCChhHHHHHHHHHHH
Q 047562 78 HRRQEMSTLYRSLRSLLPLE----YLKGKRSMSDHMNEAVNYIK 117 (246)
Q Consensus 78 ~RR~~mn~~f~~LrsllP~~----~~~~k~s~~~il~~Ai~YIk 117 (246)
+-|+++|.-+..|.+|||-. ++.||.|+ |.-++.|++
T Consensus 35 RHRdRLNaELD~lAsLLPfpqdiisKLDkLSV---LRLSVSyLr 75 (712)
T KOG3560|consen 35 RHRDRLNAELDHLASLLPFPQDIISKLDKLSV---LRLSVSYLR 75 (712)
T ss_pred hHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhh---hhhhHHHHH
Confidence 45788999999999999954 34566666 999999975
No 98
>PRK11899 prephenate dehydratase; Provisional
Probab=60.36 E-value=48 Score=30.31 Aligned_cols=62 Identities=8% Similarity=0.102 Sum_probs=45.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLL-HNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l-~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+.+....++ +.|.++|.+|...|+....-.+-...+... |.|.+.+.+. .+-..++++|.++
T Consensus 197 l~~~~~~~p-GaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~---~~d~~v~~aL~~l 259 (279)
T PRK11899 197 FVFRVRNIP-AALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH---PEDRNVALALEEL 259 (279)
T ss_pred EEEEeCCCC-ChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC---CCCHHHHHHHHHH
Confidence 333344444 469999999999999999999888766655 8999998875 3444566666554
No 99
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=58.92 E-value=38 Score=34.87 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=45.3
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI-NERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~-~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.|.|.+..+.| .|.+|+.+|.+.+..|.+.++... ++.....|.++|.+- -....|..+|++
T Consensus 612 ~I~I~~~dr~G-lLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~---~~L~~ii~~L~~ 674 (683)
T TIGR00691 612 DINIEAVDRKG-VLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNY---KHLLKIMLKIKT 674 (683)
T ss_pred EEEEEEecCCC-HHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCH---HHHHHHHHHHhC
Confidence 44455655655 699999999999999999998776 455656788888875 345556666554
No 100
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.55 E-value=29 Score=24.29 Aligned_cols=44 Identities=32% Similarity=0.430 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047562 74 DIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLS 127 (246)
Q Consensus 74 ~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~ 127 (246)
..=|.-|-.+...+..+..++-.. . .++|.+||+++-+.++.+.
T Consensus 14 ~~lR~~RHD~~NhLqvI~gllqlg-------~---~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 14 DSLRAQRHDFLNHLQVIYGLLQLG-------K---YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHCC-------C---HHHHHHHHHHHHHHHHHHH
Confidence 333778888999999999887643 2 8899999999999887763
No 101
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=58.13 E-value=30 Score=29.86 Aligned_cols=63 Identities=5% Similarity=-0.049 Sum_probs=44.9
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+-|.+.+.-++ +....|-++|.++|..+++++.+..++.+--.+.+ ... .....+|+..|..+
T Consensus 9 lviTviG~Drp-GIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv--s~~--~~~~~~le~~L~~l 71 (190)
T PRK11589 9 LVITALGADRP-GIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL--SGS--WNAITLIESTLPLK 71 (190)
T ss_pred EEEEEEcCCCC-hHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE--eCC--hhHHHHHHHHHHhh
Confidence 34556665554 56999999999999999999999999855434433 333 33667777777543
No 102
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.95 E-value=63 Score=22.38 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=36.4
Q ss_pred cCCCCCcHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 180 SFRKGIPLSQVVALLAEEGLTVVNCISTKIN-ERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 180 ~~~~~~~L~~Il~aLeelgLdVv~as~S~~~-~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
+.++| .|.++++.|.+ |..|+..+....+ +..-..+.+++.+. -...+|.++|.+
T Consensus 6 pdkPG-~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~---~~~~~i~~~L~~ 61 (68)
T cd04885 6 PERPG-ALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDR---EDLAELKERLEA 61 (68)
T ss_pred CCCCC-HHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 44555 59999999999 9999988876643 22223444555543 355677777765
No 103
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=56.23 E-value=58 Score=27.26 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=42.9
Q ss_pred EEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHhc
Q 047562 176 AINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN--ERLLHNIESEVNDGGRNIDPFELQQKIMKLT 241 (246)
Q Consensus 176 ~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~--~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I 241 (246)
.|....++| .|.+|...|...|+.+.+..+...+ +....+|++.- + .-..+.|...|.+++
T Consensus 5 sI~ven~pG-vL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~-d---~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 5 SVLVENEPG-VLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG-D---DKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEcCCCc-HHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC-C---HHHHHHHHHHHhcCc
Confidence 343444544 6999999999999999999887754 44546666654 2 235677777777665
No 104
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=56.03 E-value=79 Score=27.22 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=49.0
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC----CeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN----ERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~----~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+.|.+...-++ +.+.++-+.|-++|+.|.+.+.-+.+ +.-+|.+++++.-. ..++...|++.|..+
T Consensus 96 ~~v~v~G~DrP-GIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP-~~~~~~~L~~~l~~l 165 (190)
T PRK11589 96 VWVQVEVADSP-HLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP-ASQDAANIEQAFKAL 165 (190)
T ss_pred EEEEEEECCCC-CHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC-CCCCHHHHHHHHHHH
Confidence 34555555454 56999999999999999998877653 44567777777766 567889999888754
No 105
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=55.69 E-value=46 Score=34.43 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=44.9
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN-ERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~-~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.|.|.+..+.| +|.+|+.+|.+.++.|.++++...+ +.+...|.++|.+. -....|-.+|++
T Consensus 628 ~i~I~~~dr~G-lL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~---~~L~~i~~~Lr~ 690 (702)
T PRK11092 628 EIKVEMFNHQG-ALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDR---VHLANIMRKIRV 690 (702)
T ss_pred EEEEEEeCCCC-HHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCH---HHHHHHHHHHhC
Confidence 44555665655 6999999999999999999987754 44556778888765 345566666654
No 106
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=54.24 E-value=64 Score=27.12 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=41.4
Q ss_pred EEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHhc
Q 047562 176 AINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN--ERLLHNIESEVNDGGRNIDPFELQQKIMKLT 241 (246)
Q Consensus 176 ~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~--~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I 241 (246)
.|....++| .|.+|...|...|+.+.+..+...+ +....+|++...+ -..+.|...|.+++
T Consensus 6 sV~veN~pG-vL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~----~~i~qi~kQl~KLi 68 (161)
T PRK11895 6 SVLVENEPG-VLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE----QVIEQITKQLNKLI 68 (161)
T ss_pred EEEEcCCCc-HHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH----HHHHHHHHHHhccc
Confidence 333444544 6999999999999999999877754 4444666665432 34567776666654
No 107
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=52.04 E-value=47 Score=22.60 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=36.8
Q ss_pred ecCCCCCcHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 179 TSFRKGIPLSQVVALLAEEGLTVVNCISTK--INERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 179 c~~~~~~~L~~Il~aLeelgLdVv~as~S~--~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
...+ ++.+.++.+.|.++|+.+.+..... .++.....|+++. . ...++.+.|+++
T Consensus 6 ~~d~-~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~--~----~~~~~~~~l~~~ 62 (73)
T cd04902 6 NTDR-PGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE--P----VPDEVLEELRAL 62 (73)
T ss_pred eCCC-CCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC--C----CCHHHHHHHHcC
Confidence 3444 4579999999999999998887655 3466655665533 2 134666666653
No 108
>PRK11898 prephenate dehydratase; Provisional
Probab=51.10 E-value=70 Score=29.12 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=41.1
Q ss_pred EEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 176 AINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLL-HNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 176 ~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l-~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.+....+..+.|.++|..|.+.|+.+.+..+-...++.. |.|.+.+++. .+-..+++.|.+
T Consensus 200 if~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~---~~~~~~~~al~~ 261 (283)
T PRK11898 200 VLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH---IDDVLVAEALKE 261 (283)
T ss_pred EEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc---CCCHHHHHHHHH
Confidence 333334323469999999999999999999887655544 7888888754 233344444443
No 109
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=50.45 E-value=6.1 Score=40.51 Aligned_cols=70 Identities=24% Similarity=0.272 Sum_probs=54.1
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 65 SKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLK--GKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 65 ~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~--~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
..++.+.|.-+|.+||..++..|..|-++.-+.... .|.+....+...+.||.-++++...+.++-..++
T Consensus 648 ~k~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr 719 (856)
T KOG3582|consen 648 AKNRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLR 719 (856)
T ss_pred ccCCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhh
Confidence 347899999999999999999999998887755432 3555566688899999999887777666544443
No 110
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=49.25 E-value=82 Score=30.11 Aligned_cols=58 Identities=17% Similarity=0.191 Sum_probs=43.8
Q ss_pred ecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 179 TSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLL-HNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 179 c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l-~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
...++ +.|.++|.+|...|+....-.+-...+... |.|.+.+.+. .+-..++++|.++
T Consensus 304 ~~~~p-GaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~---~~d~~~~~aL~~l 362 (386)
T PRK10622 304 TGQQA-GALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN---LRSAEMQKALKEL 362 (386)
T ss_pred cCCCC-cHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC---CCCHHHHHHHHHH
Confidence 34444 469999999999999999999887777655 9999999865 3444566666554
No 111
>PF14992 TMCO5: TMCO5 family
Probab=48.10 E-value=29 Score=31.92 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=27.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 101 GKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDEL 133 (246)
Q Consensus 101 ~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l 133 (246)
+-.++..+..++++||++||+.++.++.+++.+
T Consensus 138 d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 138 DYQQVHQLCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567779999999999999999999987754
No 112
>PLN02705 beta-amylase
Probab=47.99 E-value=73 Score=32.58 Aligned_cols=29 Identities=34% Similarity=0.355 Sum_probs=23.5
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 047562 65 SKKMKIMRRDIERHRRQEMSTLYRSLRSL 93 (246)
Q Consensus 65 ~~~~~~~h~~~ER~RR~~mn~~f~~Lrsl 93 (246)
....|...+..||+||.--...|.-||.+
T Consensus 81 ~~~e~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 81 REKEKERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888899999998888888888764
No 113
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=46.31 E-value=73 Score=19.97 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=19.8
Q ss_pred CcHHHHHHHHHhCCceEEEEEEEe
Q 047562 185 IPLSQVVALLAEEGLTVVNCISTK 208 (246)
Q Consensus 185 ~~L~~Il~aLeelgLdVv~as~S~ 208 (246)
..+.+++++|.+.++.|...+.+.
T Consensus 15 ~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 15 GVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CHHHHHHHHHHHCCCcEEEEEcCC
Confidence 359999999999999998776543
No 114
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=45.10 E-value=77 Score=22.68 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=31.1
Q ss_pred cEEEEeecCceEEEEEecCCCC-----CcHHHHHHHHHhCCceEEEEEEEe
Q 047562 163 SVTVRPCLAGVEVAINTSFRKG-----IPLSQVVALLAEEGLTVVNCISTK 208 (246)
Q Consensus 163 ~V~V~~~~~~~eI~I~c~~~~~-----~~L~~Il~aLeelgLdVv~as~S~ 208 (246)
.|.|+..++.+.|.|.+....- ..+..+-++|...|+.+.+.+++.
T Consensus 28 ~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~ 78 (85)
T PF02120_consen 28 EVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQ 78 (85)
T ss_dssp EEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEES
T ss_pred EEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEE
Confidence 3566666777888887654310 137778889999999999988775
No 115
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.78 E-value=43 Score=24.58 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 109 MNEAVNYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 109 l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
+..||+-|.-||-.|++|++++..+.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 78899999999999999999877554
No 116
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=44.02 E-value=1.1e+02 Score=26.07 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=41.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHHhc
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI--NERLLHNIESEVNDGGRNIDPFELQQKIMKLT 241 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~--~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I 241 (246)
+.+....++ +.|.+|...|-..|+.+.+.++... .+..-.+|. +.+. ... .+.|.+.|.+++
T Consensus 5 isvlv~n~P-GVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIv--v~~~-~~~-ieqL~kQL~KLi 68 (174)
T CHL00100 5 LSVLVEDES-GVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMV--VPGD-DRT-IEQLTKQLYKLV 68 (174)
T ss_pred EEEEEeCcC-CHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEE--EECC-HHH-HHHHHHHHHHHh
Confidence 344444454 4699999999999999999988763 333323444 4433 222 788888888775
No 117
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=43.88 E-value=53 Score=23.97 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 109 MNEAVNYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 109 l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
+..||+-|..||.++++|+++...+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88899999999999999999755443
No 118
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=43.08 E-value=1.2e+02 Score=22.35 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=39.6
Q ss_pred EEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCC--eEEEEEEEEecCCCCCCCHHHHHHHHHHhc
Q 047562 176 AINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINE--RLLHNIESEVNDGGRNIDPFELQQKIMKLT 241 (246)
Q Consensus 176 ~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~--~~l~ti~akv~~~~~~i~~~~l~~~L~~~I 241 (246)
.+....++| .|.++...|..-|+.+-+-++...++ ..-.+|.+. +. .-..+.|...|.+++
T Consensus 6 si~v~n~pG-VL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~~--~~~i~qi~kQL~KLi 68 (76)
T PRK06737 6 SLVIHNDPS-VLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--CT--ENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEecCCC-HHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--CC--HHHHHHHHHHHhCCc
Confidence 333444544 69999999999999998888776443 333455554 22 235567777776655
No 119
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=42.34 E-value=1.3e+02 Score=27.77 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=44.5
Q ss_pred EEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 176 AINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLL-HNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 176 ~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l-~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
.+....++| -|+++|..|...|++.--..+-...+..- |.|.+.+.+. .+-..++++|.++
T Consensus 198 ~f~~~n~PG-aL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~---~~~~~v~~AL~el 259 (279)
T COG0077 198 IFSVPNKPG-ALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGH---IDDPLVKEALEEL 259 (279)
T ss_pred EEEcCCCCc-hHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecC---cCcHhHHHHHHHH
Confidence 334444545 69999999999999988888777766555 8888988876 3336677776654
No 120
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=40.94 E-value=59 Score=24.15 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCc--eEEEEEEEeeCCe-----EEEEE-E----------EEecCCCCCCCHHHHHHHHHHhcCC
Q 047562 188 SQVVALLAEEGL--TVVNCISTKINER-----LLHNI-E----------SEVNDGGRNIDPFELQQKIMKLTSP 243 (246)
Q Consensus 188 ~~Il~aLeelgL--dVv~as~S~~~~~-----~l~ti-~----------akv~~~~~~i~~~~l~~~L~~~I~~ 243 (246)
-+|=++|+++|+ +|.++.++...+. ++.+. . ..+.+-.+-++.++++++|.+++..
T Consensus 5 mkIk~~L~e~Gi~~~ve~~diss~~~~~~~aDiiVtt~~l~~~~~~~g~~~l~gI~N~~d~~ei~~~~~~~~~~ 78 (85)
T PRK10222 5 MKVDQFLTQSNIDHTVNSCAVGEYKSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKE 78 (85)
T ss_pred HHHHHHHHHcCCCeEEEEeehhhcccCCCCCCEEEECccchhhhccCCCceEEEEecccCHHHHHHHHHHHHHH
Confidence 356678899999 8888888765444 22222 1 1111112458899999999888754
No 121
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=40.56 E-value=1.5e+02 Score=21.80 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=39.2
Q ss_pred cCCCCCcHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHhc
Q 047562 180 SFRKGIPLSQVVALLAEEGLTVVNCISTKIN--ERLLHNIESEVNDGGRNIDPFELQQKIMKLT 241 (246)
Q Consensus 180 ~~~~~~~L~~Il~aLeelgLdVv~as~S~~~--~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I 241 (246)
..++| .|.+++..+..-|+.|-+.++.... +..-.+|.+ .+ .-..+.|..-|.+++
T Consensus 11 ~n~pG-VL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v--~~---~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 11 RFRPE-VLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV--AS---ERPIDLLSSQLNKLV 68 (76)
T ss_pred ECCcc-HHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE--CC---CchHHHHHHHHhcCc
Confidence 34544 6999999999999999988877743 333344444 33 346778888777765
No 122
>smart00338 BRLZ basic region leucin zipper.
Probab=39.90 E-value=47 Score=23.11 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 047562 113 VNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 113 i~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
-.||..|+.+++.|+.+...|..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888887777654
No 123
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=39.41 E-value=50 Score=22.90 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047562 113 VNYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 113 i~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
..||..|+.++..|+.+...|.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888777766654
No 124
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=39.12 E-value=58 Score=24.37 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047562 109 MNEAVNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 109 l~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
|..||+-|--||-+|++|+++...+..
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999998877664
No 125
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=36.47 E-value=41 Score=20.82 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q 047562 71 MRRDIERHRRQEMSTLYRSLRS 92 (246)
Q Consensus 71 ~h~~~ER~RR~~mn~~f~~Lrs 92 (246)
.-++.=|+||++++..+..||.
T Consensus 8 sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 8 SEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3345558999999999999985
No 126
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=35.22 E-value=1.3e+02 Score=31.22 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=43.5
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINER-LLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~-~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
+.|.|....+.| .|.+|+++|-+.+..|.++++...++. ....|..++.+- -....|..+|++
T Consensus 628 ~~i~v~~~~r~g-lL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n~---~~L~~i~~~l~~ 691 (701)
T COG0317 628 VDIEIRAYDRSG-LLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKNL---NHLGRVLARLKQ 691 (701)
T ss_pred EEEEEEEccccc-hHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECcH---HHHHHHHHHHhc
Confidence 444555555655 699999999999999999998886433 335666677654 345556666554
No 127
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=34.61 E-value=2.4e+02 Score=25.99 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=45.2
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI--NERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~--~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
..++++|+..+| ..+.|-.-|.++|..+++++--.. .+++|--+.....+. ..+.+.+++.+..+
T Consensus 8 ~~LtvsCpd~~G-iVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~--~~~~~~l~~~f~~~ 74 (287)
T COG0788 8 FILTVSCPDQPG-IVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG--PLDREALRAAFAPL 74 (287)
T ss_pred eEEEEecCCCCC-cHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC--cccHHHHHHHHHHH
Confidence 446677877766 599999999999999999985542 345554433333333 47788888887653
No 128
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.36 E-value=1.2e+02 Score=22.50 Aligned_cols=46 Identities=7% Similarity=0.060 Sum_probs=34.5
Q ss_pred ecCCCCCcHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEecCC
Q 047562 179 TSFRKGIPLSQVVALLAEEGLTVVNCISTK--INERLLHNIESEVNDG 224 (246)
Q Consensus 179 c~~~~~~~L~~Il~aLeelgLdVv~as~S~--~~~~~l~ti~akv~~~ 224 (246)
|++.++..|.++-.||..|+..|-+|.|.. .+++-.-.......+.
T Consensus 6 sGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~ 53 (77)
T cd04898 6 SGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH 53 (77)
T ss_pred cCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC
Confidence 556667789999999999999999999987 4556554444444444
No 129
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=34.25 E-value=1.6e+02 Score=22.17 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=40.1
Q ss_pred EEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCC--eEEEEEEEEecCCCCCCCHHHHHHHHHHhc
Q 047562 177 INTSFRKGIPLSQVVALLAEEGLTVVNCISTKINE--RLLHNIESEVNDGGRNIDPFELQQKIMKLT 241 (246)
Q Consensus 177 I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~--~~l~ti~akv~~~~~~i~~~~l~~~L~~~I 241 (246)
+....+.| .|.++-..|-..|+.+-+.+++...+ ..-.||.+.+.+. -..+.|...|.++|
T Consensus 7 vlVeN~~G-VL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~---~~ieqI~kQL~Kli 69 (84)
T PRK13562 7 LQVADQVS-TLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD---TSLHILIKKLKQQI 69 (84)
T ss_pred EEEECCCC-HHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH---HHHHHHHHHHhCCc
Confidence 33444544 69999999999988888887777544 3335666554333 34567777776655
No 130
>PRK06382 threonine dehydratase; Provisional
Probab=33.92 E-value=1.9e+02 Score=27.45 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=40.6
Q ss_pred EEEecCCCCCcHHHHHHHHHhCCceEEEEEEE----ee-CCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 176 AINTSFRKGIPLSQVVALLAEEGLTVVNCIST----KI-NERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 176 ~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S----~~-~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
.|.-..++| .|.+++..|.++|..|++.... .. .+....+|+++..+. -..+.|.+.|.+.
T Consensus 334 ~v~v~D~pG-~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~---~~~~~v~~~L~~~ 399 (406)
T PRK06382 334 ECNIPDRPG-NLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQ---DHLDRILNALREM 399 (406)
T ss_pred EEEcCCCCC-HHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCH---HHHHHHHHHHHHC
Confidence 343444544 6999999999999999988764 22 345556677776643 2345777777653
No 131
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=32.27 E-value=1.8e+02 Score=27.25 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=30.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047562 101 GKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 101 ~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
.+.+++.+|.++-+-.+.|+..+..|.++..++.+
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788899999999999999999999988766653
No 132
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=31.54 E-value=2.6e+02 Score=25.42 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=38.4
Q ss_pred CCCchhhhhhhh-HHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047562 62 DDNSKKMKIMRR-DIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 62 ~~~~~~~~~~h~-~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
....+.+|.+|. +-|+--|++++.+..+=-+ -. ++|+ . ..+-=.-|++|.++-+.|..+.+.|..
T Consensus 53 ~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQta---RD--rKKa-R---m~eme~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 53 QPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTA---RD--RKKA-R---MEEMEYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred chHHHHHhhcccCHHHHHHHHHHHHHHHHhhh---hh--HHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788886 6677777788887764321 01 1122 1 333333478888887777766655544
No 133
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=31.46 E-value=1.4e+02 Score=19.01 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.2
Q ss_pred CcHHHHHHHHHhCCceEEEEEEEe
Q 047562 185 IPLSQVVALLAEEGLTVVNCISTK 208 (246)
Q Consensus 185 ~~L~~Il~aLeelgLdVv~as~S~ 208 (246)
..+.+++++|.+.++.|...+.+.
T Consensus 15 ~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 15 GVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred cHHHHHHHHHHHCCCcEEEEEcCC
Confidence 358999999999999998887544
No 134
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=31.32 E-value=1.6e+02 Score=28.92 Aligned_cols=49 Identities=10% Similarity=0.130 Sum_probs=36.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEecCC
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLL-HNIESEVNDG 224 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l-~ti~akv~~~ 224 (246)
|.++...+.| .|.++|..|.++|+.+.+..+-...+... |.|.+.+.+.
T Consensus 19 LiFsL~d~pG-aL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~ 68 (436)
T TIGR01268 19 LIFSLKEEAG-ALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEA 68 (436)
T ss_pred EEEEcCCCCc-HHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecC
Confidence 4444444444 69999999999999999999877644433 7888888754
No 135
>PRK08198 threonine dehydratase; Provisional
Probab=31.17 E-value=2.7e+02 Score=26.31 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=42.1
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI-----NERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~-----~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.+.|.-..++| .|.+++..|-+.|..|+..+.... .+..-.+|.+++.+. . ..++|.++|.+
T Consensus 329 ~l~v~l~D~PG-~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~-~--~~~~l~~~L~~ 395 (404)
T PRK08198 329 KLRVRLPDRPG-QLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGP-E--HIEEILDALRD 395 (404)
T ss_pred EEEEEeCCCCC-HHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCH-H--HHHHHHHHHHH
Confidence 34444445544 699999999999999988877642 245556677776543 1 55677777765
No 136
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.76 E-value=1.6e+02 Score=19.62 Aligned_cols=26 Identities=8% Similarity=0.006 Sum_probs=20.3
Q ss_pred CcHHHHHHHHHhCCceEEEEEEEeeC
Q 047562 185 IPLSQVVALLAEEGLTVVNCISTKIN 210 (246)
Q Consensus 185 ~~L~~Il~aLeelgLdVv~as~S~~~ 210 (246)
..+.+++++|.+.|+.|.-.+.+..+
T Consensus 16 ~~~~~if~~L~~~~I~v~~i~q~~s~ 41 (66)
T cd04919 16 GIAGRMFTTLADHRINIEMISQGASE 41 (66)
T ss_pred CHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 45999999999999999766544433
No 137
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=29.16 E-value=1.7e+02 Score=19.25 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=20.0
Q ss_pred CCcHHHHHHHHHhCCceEEEEEEEe
Q 047562 184 GIPLSQVVALLAEEGLTVVNCISTK 208 (246)
Q Consensus 184 ~~~L~~Il~aLeelgLdVv~as~S~ 208 (246)
...+.+++++|.+.|+.|.-.+.+.
T Consensus 15 ~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 15 PGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3469999999999999997665444
No 138
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=29.02 E-value=3.2e+02 Score=25.52 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=41.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI-----NERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~-----~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
.+.|.-+.++| .|.++++.+.+.|..|++...... .+....+|.++..+. -...+|.++|.+.
T Consensus 307 ~l~v~l~D~pG-~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~---~~~~~i~~~L~~~ 374 (380)
T TIGR01127 307 RIETVLPDRPG-ALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGK---EHLDEILKILRDM 374 (380)
T ss_pred EEEEEeCCCCC-HHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCH---HHHHHHHHHHHHc
Confidence 33444444544 699999999999999998866531 244556666666543 3445777777653
No 139
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=28.96 E-value=1.7e+02 Score=19.72 Aligned_cols=31 Identities=16% Similarity=0.379 Sum_probs=25.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 104 SMSDHMNEAVNYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 104 s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
++...-..+-.||..|.+++..+.++.+.++
T Consensus 13 slv~FQ~~v~~~lq~Lt~kL~~vs~RLe~LE 43 (47)
T PF10393_consen 13 SLVAFQNKVTSALQSLTQKLDAVSKRLEALE 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678889999999999999988877765
No 140
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=28.47 E-value=1.8e+02 Score=19.24 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=22.8
Q ss_pred cHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 047562 186 PLSQVVALLAEEGLTVVNCISTKINERLLHNIE 218 (246)
Q Consensus 186 ~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~ 218 (246)
...+++++|++.|+.|..... ..+.+.+++.
T Consensus 16 ~~~~if~~l~~~~i~v~~i~t--~~~~is~~v~ 46 (62)
T cd04890 16 FLRKIFEILEKHGISVDLIPT--SENSVTLYLD 46 (62)
T ss_pred HHHHHHHHHHHcCCeEEEEec--CCCEEEEEEe
Confidence 599999999999999999854 2344434443
No 141
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=26.54 E-value=1.6e+02 Score=20.84 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 108 HMNEAVNYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 108 il~~Ai~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
-|.+|=...+.|+++|+.|+.+.+++.
T Consensus 33 kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 33 KLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 399999999999999999999887764
No 142
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=25.83 E-value=4.8e+02 Score=23.24 Aligned_cols=65 Identities=6% Similarity=-0.093 Sum_probs=39.5
Q ss_pred eEEEEEecCCCC-CcHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHH
Q 047562 173 VEVAINTSFRKG-IPLSQVVALLAEEGLTVVNCISTKIN--ERLLHNIESEVNDGGRNIDPFELQQKIM 238 (246)
Q Consensus 173 ~eI~I~c~~~~~-~~L~~Il~aLeelgLdVv~as~S~~~--~~~l~ti~akv~~~~~~i~~~~l~~~L~ 238 (246)
..+.|.|..+.+ .....+++.|++.++.+.+.++...+ +.+..+........ .....+.+..+|.
T Consensus 143 ~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~-~~~~le~iv~~L~ 210 (225)
T PRK15385 143 YILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHAD-YRKTRELIISRIG 210 (225)
T ss_pred EEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCC-chhhHHHHHHHHh
Confidence 456677765543 23688889999999999999986653 34433333333222 2345566666554
No 143
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=25.63 E-value=2.4e+02 Score=19.77 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 047562 184 GIPLSQVVALLAEEGLTVVNCISTKINERLLHNIE 218 (246)
Q Consensus 184 ~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~ 218 (246)
...+.+++++|.+.|+.|..... .+..+..++.
T Consensus 15 ~g~~~~if~~L~~~~I~v~~i~~--s~~~is~~v~ 47 (75)
T cd04912 15 HGFLAKVFEIFAKHGLSVDLIST--SEVSVSLTLD 47 (75)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEc--CCcEEEEEEE
Confidence 34599999999999999988753 3344434443
No 144
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.07 E-value=2.4e+02 Score=19.18 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHhCCceEEEEEEEeeCCe
Q 047562 185 IPLSQVVALLAEEGLTVVNCISTKINER 212 (246)
Q Consensus 185 ~~L~~Il~aLeelgLdVv~as~S~~~~~ 212 (246)
..+.+++.+|.+.|+.|.-.+.++.+-.
T Consensus 15 ~~~~~i~~aL~~~~I~v~~i~~g~s~~s 42 (65)
T cd04918 15 LILERAFHVLYTKGVNVQMISQGASKVN 42 (65)
T ss_pred cHHHHHHHHHHHCCCCEEEEEecCccce
Confidence 3699999999999999977765554443
No 145
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=23.67 E-value=2.9e+02 Score=24.91 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
Q 047562 80 RQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVN------------------YIKNLQNRIQKLSEKRDEL 133 (246)
Q Consensus 80 R~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~------------------YIk~Lq~~v~~L~~~k~~l 133 (246)
|+-|..+|..|+..=.. .+|. .--..|.++|. =||.++++|++|+.+..+.
T Consensus 6 ~qLI~~lf~RL~~ae~~--prD~-eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQ--PRDP-EAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHHHHHHHhccCC--CCCH-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788999999876554 2221 11111222221 2688899999999887653
No 146
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=23.27 E-value=1.7e+02 Score=21.96 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047562 109 MNEAVNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 109 l~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
|..+-+-|-++|.+++.|+.++.++..
T Consensus 10 ieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 10 IEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888999999999988877654
No 147
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=22.56 E-value=1.5e+02 Score=25.18 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=32.7
Q ss_pred cHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCC
Q 047562 186 PLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDG 224 (246)
Q Consensus 186 ~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~ 224 (246)
....=+.-|.+||++|--..+++.++..-..|..+|.+.
T Consensus 20 ri~~ri~rLN~LGFdV~El~~~~~~~g~~~~i~p~Vvd~ 58 (165)
T PF13224_consen 20 RIEERIRRLNELGFDVGELEITTDDDGTRLRIQPKVVDA 58 (165)
T ss_pred HHHHHHHHHHhcCCceeeeEeEEcCCCCEEEEEeeEeCC
Confidence 456667899999999999999998776667888888776
No 148
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=22.33 E-value=2.6e+02 Score=25.74 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCCCCCcccc--cccCCCCCcEEEEeecCceEEEEEecCCCCCcH
Q 047562 111 EAVNYIKNLQNRIQKLSEKRDELRRLSNSS-SSPYYSTTSESECS--QTHINLEDSVTVRPCLAGVEVAINTSFRKGIPL 187 (246)
Q Consensus 111 ~Ai~YIk~Lq~~v~~L~~~k~~l~~~s~~~-~~p~~~~~~~~~~~--~~~~~~~~~V~V~~~~~~~eI~I~c~~~~~~~L 187 (246)
+-=.-+|.|++.|.+|+++.+.|+...... .+....-....... ...+. .+.....+...+..|+.........
T Consensus 7 EDEqKtR~LEesI~RLEkEIe~LE~~es~iStKE~~il~~lka~E~~~e~i~---~~~k~~~~t~~~~~is~~p~~~~~~ 83 (278)
T PF03285_consen 7 EDEQKTRSLEESIHRLEKEIEALENGESQISTKEQLILEKLKAVEETEEDII---KSQKTPVGTPKEKRISNTPDKQVEG 83 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccccccccccchhhhhHH---hhhcccccccccccccccccccCCc
Confidence 333457889999999999988888642210 01000000000000 00000 0000111222223332111112234
Q ss_pred HHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHhcC
Q 047562 188 SQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKLTS 242 (246)
Q Consensus 188 ~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I~ 242 (246)
..+|.+..+-|-.||++-.|..+ . +.++-..+...+|.+-|++|=.
T Consensus 84 ~~~m~aVYdDgrKVVyaV~S~~g-~--------~eNGv~~LSSsEVeELi~KAdE 129 (278)
T PF03285_consen 84 SDMMKAVYDDGRKVVYAVHSGGG-T--------SENGVHPLSSSEVEELIHKADE 129 (278)
T ss_pred cccccccccccceEEEEEecCCC-c--------ccCccccCcHHHHHHHHHhccc
Confidence 56666666666666666544422 1 1233245888999999988743
No 149
>PLN02317 arogenate dehydratase
Probab=21.80 E-value=4.8e+02 Score=25.08 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=40.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCe---------------EEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINER---------------LLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~---------------~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
|.+.-..+ .+.|.++|.+|...|+.+....+-...+. .=|.|.+.++.. +.-..++++|.+
T Consensus 286 ivfsl~~~-pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~---~~d~~~~~aL~~ 361 (382)
T PLN02317 286 IVFSLEEG-PGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEAS---MADPRAQNALAH 361 (382)
T ss_pred EEEEcCCC-CchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcC---cCCHHHHHHHHH
Confidence 33333334 44699999999999999999987775444 237888877654 222445555544
No 150
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.46 E-value=3.1e+02 Score=20.16 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=21.6
Q ss_pred CCCCCcHHHHHHHHHhCCceEEEEEEE
Q 047562 181 FRKGIPLSQVVALLAEEGLTVVNCIST 207 (246)
Q Consensus 181 ~~~~~~L~~Il~aLeelgLdVv~as~S 207 (246)
+.-|+ +.++|++||++|+.+-|.-++
T Consensus 13 ~evGF-~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 13 REVGF-GRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred chhcH-HHHHHHHHHHcCCCEeeecCC
Confidence 34465 999999999999999998754
No 151
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.41 E-value=3.4e+02 Score=19.96 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 83 MSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDEL 133 (246)
Q Consensus 83 mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l 133 (246)
++.+|...|++|-...-.++. +.+=-.+|+.|+++++...+-...+
T Consensus 33 lk~Klq~ar~~i~~lpgi~~s-----~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 33 LKHKLQKARAAIRELPGIDRS-----VEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHhCCCccCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554433222332 7777888999999887766654443
No 152
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=21.33 E-value=99 Score=29.47 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 106 SDHMNEAVNYIKNLQNRIQKLSEKRDEL 133 (246)
Q Consensus 106 ~~il~~Ai~YIk~Lq~~v~~L~~~k~~l 133 (246)
...+++-++|.+.|++++++++..+.++
T Consensus 138 ~~r~n~l~eY~q~Laek~Ek~e~drkK~ 165 (449)
T KOG3896|consen 138 VNRLNELTEYMQRLAEKIEKAEKDRKKG 165 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhcc
Confidence 4569999999999999999998776654
No 153
>PRK08526 threonine dehydratase; Provisional
Probab=21.26 E-value=4.8e+02 Score=24.92 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=40.6
Q ss_pred EEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCe-----EEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 176 AINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINER-----LLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 176 ~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~-----~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.+.-+.++| .|.+++..+-+.+..|++......... ....|.++..+. -..++|.+.|.+
T Consensus 330 ~~~~~d~pg-~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~l~~ 394 (403)
T PRK08526 330 HVTLVDKPG-ALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGK---EHQEEIRKILTE 394 (403)
T ss_pred EEEcCCCCC-HHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 333444544 699999999999999999888664332 445566666654 345666666654
No 154
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=21.17 E-value=2.7e+02 Score=18.76 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=17.8
Q ss_pred CCcHHHHHHHHHhCCceEEEE
Q 047562 184 GIPLSQVVALLAEEGLTVVNC 204 (246)
Q Consensus 184 ~~~L~~Il~aLeelgLdVv~a 204 (246)
++.+.+++.+|.+.|+.|+..
T Consensus 15 ~gi~~~if~aL~~~~I~v~~~ 35 (64)
T cd04937 15 PGVMAKIVGALSKEGIEILQT 35 (64)
T ss_pred cCHHHHHHHHHHHCCCCEEEE
Confidence 446999999999999999733
No 155
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.95 E-value=2.4e+02 Score=18.11 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=19.1
Q ss_pred CCcHHHHHHHHHhCCceEEEEEE
Q 047562 184 GIPLSQVVALLAEEGLTVVNCIS 206 (246)
Q Consensus 184 ~~~L~~Il~aLeelgLdVv~as~ 206 (246)
...+.+++++|.+.++.|...+.
T Consensus 14 ~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 14 PGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEc
Confidence 34599999999999999977764
No 156
>PLN02905 beta-amylase
Probab=20.57 E-value=1.3e+02 Score=31.02 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=25.2
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 047562 64 NSKKMKIMRRDIERHRRQEMSTLYRSLRSL 93 (246)
Q Consensus 64 ~~~~~~~~h~~~ER~RR~~mn~~f~~Lrsl 93 (246)
..-..|.+.+..||+||.--...|.-||.+
T Consensus 82 ~~~~ere~~~~rer~rrai~~~i~~glr~~ 111 (702)
T PLN02905 82 RPLEEKERTKLRERHRRAITARILAGLRRH 111 (702)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 344678889999999999999999999875
Done!