Query 047562
Match_columns 246
No_of_seqs 171 out of 929
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlw_A MAD protein, MAX dimeri 99.7 4.6E-16 1.6E-20 115.4 9.7 68 68-135 1-68 (80)
2 1nkp_A C-MYC, MYC proto-oncoge 99.6 6E-16 2.1E-20 116.7 9.1 72 64-135 2-73 (88)
3 1hlo_A Protein (transcription 99.6 8.3E-16 2.8E-20 113.8 8.6 71 64-135 8-78 (80)
4 1am9_A Srebp-1A, protein (ster 99.6 1.8E-15 6.2E-20 112.6 9.2 69 66-136 4-72 (82)
5 1nkp_B MAX protein, MYC proto- 99.6 1.7E-15 5.9E-20 112.7 9.0 67 68-135 2-68 (83)
6 3u5v_A Protein MAX, transcript 99.5 2.5E-15 8.7E-20 110.3 3.1 63 65-127 2-65 (76)
7 1a0a_A BHLH, protein (phosphat 99.5 1.7E-15 5.9E-20 107.4 2.0 56 68-123 2-61 (63)
8 1an4_A Protein (upstream stimu 99.5 5.4E-15 1.8E-19 105.2 1.7 58 66-123 3-63 (65)
9 4ati_A MITF, microphthalmia-as 99.5 5.1E-14 1.7E-18 111.5 6.7 68 65-132 24-92 (118)
10 4h10_B Circadian locomoter out 99.5 9.4E-14 3.2E-18 100.5 7.5 63 63-127 3-65 (71)
11 2ql2_B Neurod1, neurogenic dif 99.5 9.8E-14 3.3E-18 97.4 7.0 58 67-124 1-58 (60)
12 1mdy_A Protein (MYOD BHLH doma 99.4 4.2E-13 1.4E-17 96.4 6.2 58 65-123 9-66 (68)
13 4h10_A ARYL hydrocarbon recept 99.3 1.1E-12 3.8E-17 95.5 2.6 58 64-121 5-63 (73)
14 2lfh_A DNA-binding protein inh 99.0 5.1E-11 1.7E-15 85.1 1.1 50 72-121 18-67 (68)
15 4f3l_A Mclock, circadian locom 98.8 7.3E-09 2.5E-13 94.8 6.2 60 61-122 5-64 (361)
16 4aya_A DNA-binding protein inh 98.6 5.3E-08 1.8E-12 74.1 6.8 51 74-124 31-81 (97)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.5 5.1E-08 1.8E-12 90.3 4.5 58 65-122 10-68 (387)
18 4ath_A MITF, microphthalmia-as 98.2 3.9E-06 1.3E-10 62.1 7.8 54 80-133 4-58 (83)
19 1zpv_A ACT domain protein; str 96.2 0.08 2.7E-06 37.9 11.0 64 173-240 6-69 (91)
20 2nyi_A Unknown protein; protei 93.6 0.22 7.4E-06 41.3 7.6 66 173-239 6-71 (195)
21 1u8s_A Glycine cleavage system 93.5 0.36 1.2E-05 39.5 8.8 63 173-240 7-69 (192)
22 2ko1_A CTR148A, GTP pyrophosph 92.6 0.37 1.3E-05 33.8 6.7 62 174-239 7-68 (88)
23 1u8s_A Glycine cleavage system 91.1 1.4 4.9E-05 35.8 9.6 63 174-240 95-165 (192)
24 2nyi_A Unknown protein; protei 90.4 1 3.5E-05 37.2 8.1 63 173-240 94-162 (195)
25 3p96_A Phosphoserine phosphata 83.3 2.9 9.8E-05 37.9 7.4 65 173-240 13-77 (415)
26 3he4_B Synzip5; heterodimeric 81.0 2.2 7.6E-05 26.7 3.9 28 108-135 4-31 (46)
27 3o1l_A Formyltetrahydrofolate 80.8 10 0.00036 33.7 9.9 65 173-240 23-89 (302)
28 3obi_A Formyltetrahydrofolate 80.5 11 0.00037 33.3 9.9 65 173-240 7-73 (288)
29 3n0v_A Formyltetrahydrofolate 79.2 12 0.0004 33.0 9.6 64 173-240 9-74 (286)
30 3lou_A Formyltetrahydrofolate 76.9 14 0.00048 32.6 9.5 67 173-240 11-79 (292)
31 2jhe_A Transcription regulator 71.9 11 0.00038 29.0 6.9 59 174-239 2-60 (190)
32 2l5g_A GPS2 protein, G protein 66.2 12 0.0004 23.1 4.4 27 107-133 8-34 (38)
33 2f1f_A Acetolactate synthase i 64.5 11 0.00039 30.4 5.6 62 175-241 6-69 (164)
34 1y7p_A Hypothetical protein AF 62.2 22 0.00076 30.4 7.1 61 173-240 5-70 (223)
35 3nrb_A Formyltetrahydrofolate 58.9 35 0.0012 29.9 8.1 63 173-240 8-72 (287)
36 2wt7_A Proto-oncogene protein 56.0 43 0.0015 22.5 6.5 24 112-135 21-44 (63)
37 2pc6_A Probable acetolactate s 54.4 14 0.00049 29.9 4.5 62 175-241 7-70 (165)
38 3luy_A Probable chorismate mut 53.3 86 0.0029 28.0 9.9 54 184-240 219-273 (329)
39 2fgc_A Acetolactate synthase, 53.0 34 0.0012 28.5 6.6 62 175-241 32-95 (193)
40 1zme_C Proline utilization tra 52.4 15 0.00051 24.5 3.7 23 113-135 43-65 (70)
41 2qmx_A Prephenate dehydratase; 50.9 33 0.0011 30.1 6.6 62 175-240 203-265 (283)
42 1gd2_E Transcription factor PA 47.9 18 0.00063 25.3 3.6 20 113-132 28-47 (70)
43 3mwb_A Prephenate dehydratase; 47.7 47 0.0016 29.6 7.2 62 176-240 205-267 (313)
44 2oqq_A Transcription factor HY 46.8 22 0.00076 22.5 3.4 21 114-134 3-23 (42)
45 1dh3_A Transcription factor CR 46.0 23 0.00079 23.4 3.7 22 114-135 22-43 (55)
46 2wq1_A General control protein 44.8 25 0.00085 21.0 3.2 19 116-134 2-20 (33)
47 1kd8_B GABH BLL, GCN4 acid bas 44.5 25 0.00084 21.5 3.2 19 116-134 3-21 (36)
48 2jee_A YIIU; FTSZ, septum, coi 44.4 32 0.0011 24.8 4.4 26 109-134 15-40 (81)
49 2qmw_A PDT, prephenate dehydra 41.8 59 0.002 28.2 6.7 63 173-240 187-253 (267)
50 2er8_A Regulatory protein Leu3 39.6 14 0.00048 24.9 1.9 21 113-133 48-68 (72)
51 3c3g_A Alpha/beta peptide with 37.6 38 0.0013 20.3 3.2 19 116-134 2-20 (33)
52 1jnm_A Proto-oncogene C-JUN; B 36.6 38 0.0013 22.6 3.7 24 112-135 20-43 (62)
53 2dgc_A Protein (GCN4); basic d 35.4 41 0.0014 22.8 3.7 24 112-135 28-51 (63)
54 1kd8_A GABH AIV, GCN4 acid bas 33.8 31 0.0011 21.0 2.5 18 117-134 4-21 (36)
55 2oxj_A Hybrid alpha/beta pepti 33.3 51 0.0017 19.8 3.3 20 116-135 3-22 (34)
56 3byp_A CZRB protein; membrane 32.3 1.2E+02 0.0043 20.9 6.9 53 186-239 11-68 (94)
57 2hy6_A General control protein 31.4 36 0.0012 20.5 2.5 19 116-134 3-21 (34)
58 1hwt_C Protein (heme activator 30.7 18 0.00063 24.8 1.3 22 112-133 56-77 (81)
59 1t2k_D Cyclic-AMP-dependent tr 30.2 56 0.0019 21.6 3.7 22 113-134 21-42 (61)
60 3c3f_A Alpha/beta peptide with 29.6 61 0.0021 19.5 3.2 19 116-134 3-21 (34)
61 1xkm_B Distinctin chain B; por 29.2 60 0.0021 17.9 2.9 17 108-124 5-21 (26)
62 1pyi_A Protein (pyrimidine pat 27.8 42 0.0015 23.7 2.9 22 113-134 47-68 (96)
63 2r2v_A GCN4 leucine zipper; co 27.6 69 0.0023 19.3 3.2 19 116-134 3-21 (34)
64 3coq_A Regulatory protein GAL4 26.1 60 0.0021 22.4 3.4 22 113-134 44-65 (89)
65 2bni_A General control protein 25.6 53 0.0018 19.8 2.5 19 116-134 3-21 (34)
66 3m48_A General control protein 25.4 67 0.0023 19.2 2.9 18 117-134 3-20 (33)
67 1pd7_B MAD1; PAH2, SIN3, eukar 25.2 88 0.003 17.6 3.2 16 106-121 5-20 (26)
68 2f06_A Conserved hypothetical 25.1 2.1E+02 0.0073 21.2 8.4 49 183-239 82-130 (144)
69 2zzt_A Putative uncharacterize 25.0 1.7E+02 0.0059 21.1 6.0 53 187-240 12-67 (107)
70 3k29_A Putative uncharacterize 24.9 1.2E+02 0.004 24.8 5.2 60 68-133 37-97 (169)
71 1uo4_A General control protein 24.4 57 0.002 19.6 2.5 19 116-134 3-21 (34)
72 3w03_C DNA repair protein XRCC 23.3 1E+02 0.0035 25.4 4.7 32 104-135 142-173 (184)
73 3fx7_A Putative uncharacterize 23.0 75 0.0026 23.5 3.4 21 109-129 65-85 (94)
74 3v86_A De novo design helix; c 21.2 88 0.003 17.4 2.6 17 115-131 1-17 (27)
No 1
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.66 E-value=4.6e-16 Score=115.37 Aligned_cols=68 Identities=22% Similarity=0.345 Sum_probs=63.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047562 68 MKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 68 ~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
+|..||..||+||..||..|..|+++||......|.|+++||..|++||+.|+++.++|..+++.+..
T Consensus 1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999998877889999999999999999999999999998887764
No 2
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.64 E-value=6e-16 Score=116.71 Aligned_cols=72 Identities=26% Similarity=0.324 Sum_probs=64.3
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047562 64 NSKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 64 ~~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
++..+|..||..||+||..||+.|..||++||......|.|+++||..||+||+.|+++.+.|..+++.+..
T Consensus 2 ed~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 2 HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999998766679999999999999999999999988877665543
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.63 E-value=8.3e-16 Score=113.79 Aligned_cols=71 Identities=23% Similarity=0.410 Sum_probs=65.1
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047562 64 NSKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 64 ~~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
....+|..|+.+||+||..||..|..|+++||... ..|.|+++||..||+||+.|++++++|+.+.++|..
T Consensus 8 ~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 8 SDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999764 368999999999999999999999999999888765
No 4
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.62 E-value=1.8e-15 Score=112.59 Aligned_cols=69 Identities=25% Similarity=0.326 Sum_probs=62.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047562 66 KKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDELRRL 136 (246)
Q Consensus 66 ~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~~~ 136 (246)
..+|..|+.+||+||.+||+.|..|++|||.. ..|.++++||.+||+||+.|+++++.|+.+.+.+...
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~--~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999985 3578888889999999999999999999998887653
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.61 E-value=1.7e-15 Score=112.73 Aligned_cols=67 Identities=24% Similarity=0.427 Sum_probs=61.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047562 68 MKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 68 ~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
+|..|+..||+||..||..|..|+++||... ..|.|+++||..||+||+.|++++++|+.+++++..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999754 468999999999999999999999999988877764
No 6
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.53 E-value=2.5e-15 Score=110.34 Aligned_cols=63 Identities=17% Similarity=0.333 Sum_probs=51.3
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCC-ChhHHHHHHHHHHHHHHHHHHHHH
Q 047562 65 SKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKR-SMSDHMNEAVNYIKNLQNRIQKLS 127 (246)
Q Consensus 65 ~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~-s~~~il~~Ai~YIk~Lq~~v~~L~ 127 (246)
+..+|..||..||+||..||+.|..||.+||.....+|. |+++||..||+||+.||+++++++
T Consensus 2 ~~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 2 GADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred chhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999965456777 799999999999999999998764
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.53 E-value=1.7e-15 Score=107.42 Aligned_cols=56 Identities=25% Similarity=0.413 Sum_probs=50.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcC----CCCChhHHHHHHHHHHHHHHHHH
Q 047562 68 MKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLK----GKRSMSDHMNEAVNYIKNLQNRI 123 (246)
Q Consensus 68 ~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~----~k~s~~~il~~Ai~YIk~Lq~~v 123 (246)
+|.+|+.+||+||.+||..|..|++|||...+. .|.|++++|+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999976543 47788888999999999999865
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=5.4e-15 Score=105.19 Aligned_cols=58 Identities=21% Similarity=0.418 Sum_probs=50.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcC---CCCChhHHHHHHHHHHHHHHHHH
Q 047562 66 KKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLK---GKRSMSDHMNEAVNYIKNLQNRI 123 (246)
Q Consensus 66 ~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~---~k~s~~~il~~Ai~YIk~Lq~~v 123 (246)
..+|..|+.+||+||..||..|..|++|||..... .|.++++||..||+||+.||++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 35688999999999999999999999999987643 36777788999999999999864
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.47 E-value=5.1e-14 Score=111.55 Aligned_cols=68 Identities=22% Similarity=0.327 Sum_probs=53.2
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 65 SKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLK-GKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDE 132 (246)
Q Consensus 65 ~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~-~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~ 132 (246)
...+|..|+.+||+||.+||+.|..|++|||..... .|.++++||..||+||+.||++++.|++...+
T Consensus 24 ~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 24 ERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999987654 48899999999999999999999999875433
No 10
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.47 E-value=9.4e-14 Score=100.55 Aligned_cols=63 Identities=22% Similarity=0.420 Sum_probs=54.3
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047562 63 DNSKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLS 127 (246)
Q Consensus 63 ~~~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~ 127 (246)
..+..+|..|+.+||+||.+||..|..|++|||.. ..|.++++||..||+||+.||+.+.=|+
T Consensus 3 ~k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~--~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 3 DKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN--ARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC--CSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCC--CCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34678999999999999999999999999999953 3477788889999999999999876543
No 11
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.47 E-value=9.8e-14 Score=97.45 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=53.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHH
Q 047562 67 KMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQ 124 (246)
Q Consensus 67 ~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~ 124 (246)
++|..||..||+|++.||..|..||.+||......|.|+.+||..||+||..|++.++
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3688999999999999999999999999988777899999999999999999998763
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.39 E-value=4.2e-13 Score=96.44 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=53.3
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHH
Q 047562 65 SKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRI 123 (246)
Q Consensus 65 ~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v 123 (246)
...+|..||+.||+|+..||+.|..||.+||... ..|.|+.+||..||+||..|++.+
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999764 579999999999999999999865
No 13
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=95.51 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=49.5
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC-cCCCCChhHHHHHHHHHHHHHHH
Q 047562 64 NSKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEY-LKGKRSMSDHMNEAVNYIKNLQN 121 (246)
Q Consensus 64 ~~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~-~~~k~s~~~il~~Ai~YIk~Lq~ 121 (246)
.-..+|..|+.+||+||.+||..|..|++|||.+. ...|.++++||..||+||+.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999753 22466777779999999999974
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.01 E-value=5.1e-11 Score=85.08 Aligned_cols=50 Identities=22% Similarity=0.269 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHH
Q 047562 72 RRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQN 121 (246)
Q Consensus 72 h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~ 121 (246)
-++.||+|+..||..|..||.+||......|.|+.+||..||+||..||+
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 35679999999999999999999998888899999999999999999985
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.76 E-value=7.3e-09 Score=94.85 Aligned_cols=60 Identities=23% Similarity=0.463 Sum_probs=40.2
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHH
Q 047562 61 NDDNSKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNR 122 (246)
Q Consensus 61 ~~~~~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~ 122 (246)
++.....+|..|+.+||+||.+||..|..|++|||. ...|.++++||..||.|||.|+..
T Consensus 5 ~~~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~--~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 5 EDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHTCCS--SSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCC--CCCCcCHHHHHHHHHHHHHHHHhh
Confidence 445567889999999999999999999999999993 234666777799999999999864
No 16
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.64 E-value=5.3e-08 Score=74.10 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHH
Q 047562 74 DIERHRRQEMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQ 124 (246)
Q Consensus 74 ~~ER~RR~~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~ 124 (246)
..||.|-..||+.|..||.+||......|.|+.++|..||+||..|++-++
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 346889999999999999999988777899999999999999999998863
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.52 E-value=5.1e-08 Score=90.25 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=47.6
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC-cCCCCChhHHHHHHHHHHHHHHHH
Q 047562 65 SKKMKIMRRDIERHRRQEMSTLYRSLRSLLPLEY-LKGKRSMSDHMNEAVNYIKNLQNR 122 (246)
Q Consensus 65 ~~~~~~~h~~~ER~RR~~mn~~f~~LrsllP~~~-~~~k~s~~~il~~Ai~YIk~Lq~~ 122 (246)
...+|..|+.+||+||.+||..|..|++|||... ...|.++.+||..||.|||.|+..
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 4578999999999999999999999999999432 123555666699999999999853
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.24 E-value=3.9e-06 Score=62.05 Aligned_cols=54 Identities=19% Similarity=0.328 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCCCC-cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 80 RQEMSTLYRSLRSLLPLEY-LKGKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDEL 133 (246)
Q Consensus 80 R~~mn~~f~~LrsllP~~~-~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l 133 (246)
|-.+|+.+..|..|||... ...|.++.+||..|++||+.||+..+.+.+.....
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~ 58 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ 58 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999753 44588999999999999999999888777654433
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.20 E-value=0.08 Score=37.92 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=51.1
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+.|.|.|..++| .+.+|..+|-++|..|++.+....++.++..+.+++.+. ...+.|.++|.++
T Consensus 6 ~~l~v~~~DrpG-ila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~---~~l~~l~~~L~~~ 69 (91)
T 1zpv_A 6 AIITVVGKDKSG-IVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEK---QDFTYLRNEFEAF 69 (91)
T ss_dssp EEEEEEESCCTT-HHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSC---CCHHHHHHHHHHH
T ss_pred EEEEEEECCCCC-HHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCC---CCHHHHHHHHHHH
Confidence 456677876655 699999999999999999998887777767777776653 4788999998865
No 20
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.57 E-value=0.22 Score=41.34 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=46.8
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
+.|.|.|.-++| +++.|...|.++|+.|++++..+..+.++-.+.+...........+.|++.|..
T Consensus 6 ~~ltv~~~DrpG-iva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~~ 71 (195)
T 2nyi_A 6 FVVSVAGSDRVG-IVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPG 71 (195)
T ss_dssp EEEEEEEECCTT-HHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTT
T ss_pred EEEEEEeCCCCc-HHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHHH
Confidence 567788876655 699999999999999999999988888776666654321000114566666543
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.47 E-value=0.36 Score=39.53 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=48.8
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+.|.|.|..++| .+++|..+|.++|+.|++++....++.++..+.+.... ...+.|++.|.++
T Consensus 7 ~~itv~~~DrpG-iva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~----~~~~~l~~~L~~~ 69 (192)
T 1u8s_A 7 LVITAVGTDRPG-ICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP----SNITRVETTLPLL 69 (192)
T ss_dssp EEEEEEEECCTT-HHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH----HHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCc-HHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC----CCHHHHHHHHHHH
Confidence 557778876655 69999999999999999999988888877766665432 2567777777654
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=92.64 E-value=0.37 Score=33.78 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=42.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.|.|.+..++| .|.+|..+|.+.|+.|.+.+....++.....|.+++.+. -...++.++|.+
T Consensus 7 ~l~v~~~Dr~G-~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~---~~l~~l~~~L~~ 68 (88)
T 2ko1_A 7 GIRIVGEDKNG-MTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNT---DKLTTLMDKLRK 68 (88)
T ss_dssp EEEEEEECCTT-HHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSH---HHHHHHHHHHTT
T ss_pred EEEEEEECCCc-HHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCH---HHHHHHHHHHhc
Confidence 45555655555 699999999999999999998876664445555565543 244555555543
No 23
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=91.08 E-value=1.4 Score=35.82 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=45.6
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC--------CeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN--------ERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~--------~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
.|.|.|..+.| .+.+|...|.++|+.|..+...+.+ +.++-.+.+.+. ...+.+.|++.|..+
T Consensus 95 ~l~v~~~D~~G-il~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~---~~~~~~~l~~~l~~~ 165 (192)
T 1u8s_A 95 EVYVESDDKLG-LTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD---SGCNLMQLQEEFDAL 165 (192)
T ss_dssp EEEEEESCCTT-HHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC---TTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCcc-HHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC---CCCCHHHHHHHHHHH
Confidence 45667766554 6999999999999999999988754 233334444433 356889999999864
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=90.41 E-value=1 Score=37.16 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=46.5
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC------CeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN------ERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~------~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
..|.|.|..+.| .+..|-..|-++|+.|+++...+.+ +.++-.+.+.+.+ ..+ +.|++.|..+
T Consensus 94 ~iltv~g~DrpG-iva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~---~~~-~~l~~~l~~~ 162 (195)
T 2nyi_A 94 YELYVEGPDSEG-IVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF---PLY-QEVVTALSRV 162 (195)
T ss_dssp EEEEEEEECCTT-HHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG---GGH-HHHHHHHHHH
T ss_pred EEEEEEeCCCcC-HHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC---Ccc-HHHHHHHHHH
Confidence 456777876655 6999999999999999999998865 4454455554443 345 8888888754
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=83.26 E-value=2.9 Score=37.92 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=50.8
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+.|+|+|.-+.| ..+.|...|-++|..|++++-...++.++-.+.+.+.+. ..+.+.|++.|..+
T Consensus 13 ~~lt~~g~Dr~G-iv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~--~~~~~~l~~~l~~~ 77 (415)
T 3p96_A 13 VLITVTGVDQPG-VTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD--VADGPALRHDVEAA 77 (415)
T ss_dssp EEEEEEEECCTT-HHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH--HHTSHHHHHHHHHH
T ss_pred EEEEEEcCCCCC-HHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC--cCCHHHHHHHHHHH
Confidence 457778887765 699999999999999999999888998877777766543 23557888887654
No 26
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=80.99 E-value=2.2 Score=26.72 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047562 108 HMNEAVNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 108 il~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
++.+--+||++|+++-.+|+.-++.++.
T Consensus 4 tvkelknyiqeleernaelknlkehlkf 31 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHLKF 31 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 4778889999999999999987776653
No 27
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=80.78 E-value=10 Score=33.66 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=48.0
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI--NERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~--~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+-+.+.|.-+.| ....|-..|-++|+.|++++-... .+.+|-.+.+.+.+. ..+.++|++.|..+
T Consensus 23 ~iLtv~c~DrpG-IVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~--~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 23 FRLVIACPDRVG-IVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL--PFDLDGFREAFTPI 89 (302)
T ss_dssp EEEEEEEECCTT-HHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS--SSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCC-HHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC--CCCHHHHHHHHHHH
Confidence 446778887765 699999999999999999997764 566554444444332 47889999888643
No 28
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=80.49 E-value=11 Score=33.25 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=49.4
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTK--INERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~--~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+.+.+.|.-+.| ...+|-..|-++|+.+++++... ..+.+|-.+.+.+.+. ..+.++|++.|..+
T Consensus 7 ~iLtv~g~DrpG-IVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~--~~~~~~L~~~f~~l 73 (288)
T 3obi_A 7 YVLTLSCPDRAG-IVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK--VIPLASLRTGFGVI 73 (288)
T ss_dssp EEEEEEEECCTT-HHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC--CCCHHHHHHHHHHH
T ss_pred EEEEEECCCCCC-HHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC--CCCHHHHHHHHHHH
Confidence 457778887765 69999999999999999998753 4566665666666543 57889999988653
No 29
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=79.16 E-value=12 Score=33.00 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=47.7
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTK--INERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~--~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+.+.+.|.-+.| ...+|-..|-++|+.+++++... ..+.++-.+.+.. . ...+.++|++.|..+
T Consensus 9 ~vLtv~c~DrpG-IVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~-~~~~~~~L~~~f~~l 74 (286)
T 3n0v_A 9 WILTADCPSMLG-TVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ--P-DDFDEAGFRAGLAER 74 (286)
T ss_dssp EEEEEEEECCTT-HHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC--C-SSCCHHHHHHHHHHH
T ss_pred EEEEEEeCCCCC-HHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec--C-CCCCHHHHHHHHHHH
Confidence 557788887765 69999999999999999999774 3555554444443 3 247889999988654
No 30
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=76.90 E-value=14 Score=32.60 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=47.5
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTK--INERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~--~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+-+.+.|.-+.| ...+|-..|-++|+.|++++-.. ..+.+|-.+.+...-.....+.++|++.|..+
T Consensus 11 ~vLtv~c~Dr~G-IVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~l 79 (292)
T 3lou_A 11 FVLTLSCPSAAG-QVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPI 79 (292)
T ss_dssp EEEEEEEESCSC-HHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHH
T ss_pred EEEEEEcCCCCC-HHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHH
Confidence 457778887766 69999999999999999999774 45666655555544111247889999888653
No 31
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=71.89 E-value=11 Score=29.05 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=39.8
Q ss_pred EEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 174 EVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 174 eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
.|.|.|..+.| +|.+|+++|.+.++.+..+++... |. +..++... ..-....|.+.|.+
T Consensus 2 ~~~v~~~dr~g-~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~~~-~~~~~~~L~~~l~~ 60 (190)
T 2jhe_A 2 RLEVFCEDRLG-LTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFAEL-EFESFSSLMAEIRR 60 (190)
T ss_dssp EEEEEECSCTT-HHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEECCC-CHHHHHHHHHHHHH
T ss_pred EEEEEEecCCc-HHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEEeC-CHHHHHHHHHHHHc
Confidence 46777876655 699999999999999999998765 43 33444432 22234555555554
No 32
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=66.17 E-value=12 Score=23.13 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 107 DHMNEAVNYIKNLQNRIQKLSEKRDEL 133 (246)
Q Consensus 107 ~il~~Ai~YIk~Lq~~v~~L~~~k~~l 133 (246)
..|+++-+-|-.|+.+++.|+++|.++
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999998775
No 33
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=64.49 E-value=11 Score=30.44 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=43.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHhc
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN--ERLLHNIESEVNDGGRNIDPFELQQKIMKLT 241 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~--~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I 241 (246)
|.|....++| .|.+|...|.+.|+.+.+.++.... +....+|.+. +. .-..+.|.+.|.+++
T Consensus 6 IsV~v~NrpG-vLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~d--~~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 6 LSVLLENESG-ALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--GD--EKVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEECCTT-HHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--SC--HHHHHHHHHHHHHST
T ss_pred EEEEEeCCCc-HHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--cc--HHHHHHHHHHHcCCC
Confidence 4454555655 6999999999999999998887643 4455566665 22 345677777777754
No 34
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=62.22 E-value=22 Score=30.36 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=40.4
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC-----CeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN-----ERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~-----~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+.+.|.+..+.| .|++|+.+|-+++..|.+.+..... +.. +++.++.+ . ..++|-++|+++
T Consensus 5 VtL~I~a~DRpG-LLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A--~I~IEV~d---~-~Le~LL~kLrkI 70 (223)
T 1y7p_A 5 RGLRIIAENKIG-VLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKA--LIYFEIEG---G-DFEKILERVKTF 70 (223)
T ss_dssp EEEEEEEECCTT-HHHHHHHHCC----CEEEEEEEECCSSTTTTEE--EEEEEECS---S-CHHHHHHHHHTC
T ss_pred EEEEEEEcCCCC-HHHHHHHHHHHcCCCceEEEEEccccCCcCCEE--EEEEEECC---C-CHHHHHHHHhCC
Confidence 445565655655 6999999999999999999988853 333 23366664 3 888888888763
No 35
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=58.90 E-value=35 Score=29.91 Aligned_cols=63 Identities=13% Similarity=0.186 Sum_probs=42.2
Q ss_pred eEEEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINTSFRKGIPLSQVVALLAEEGLTVVNCISTK--INERLLHNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~--~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
+-+.+.|.-+.| ...+|-..|-++|+.|++++-.. ..+.+|-.+.+.. . ..+.++|++.|..+
T Consensus 8 ~vLtv~c~Dr~G-IVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~--~~~~~~L~~~f~~l 72 (287)
T 3nrb_A 8 YVLSLACQDAPG-IVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI--P--VAGVNDFNSAFGKV 72 (287)
T ss_dssp EEEEEEEECCTT-HHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC--C--C---CHHHHHHHHH
T ss_pred EEEEEECCCCCC-HHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc--C--CCCHHHHHHHHHHH
Confidence 456778887765 69999999999999999998753 3555554333333 2 13445888877543
No 36
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=55.96 E-value=43 Score=22.48 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047562 112 AVNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 112 Ai~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
--.||..|+++++.|+.+...|..
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888777777665543
No 37
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=54.38 E-value=14 Score=29.90 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=43.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHhc
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKIN--ERLLHNIESEVNDGGRNIDPFELQQKIMKLT 241 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~--~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I 241 (246)
+.|....++| .|.+|...|.+.|+.|.+.++.... +..-.+|.+. .+ .-..+.|.+.|.+++
T Consensus 7 IsV~veNrpG-vL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~d---~~~leql~kQL~Kl~ 70 (165)
T 2pc6_A 7 ISLLMENEAG-ALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-GP---DEIVEQITKQLNKLI 70 (165)
T ss_dssp EEEEEECSTT-HHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-EC---HHHHHHHHHHHHHST
T ss_pred EEEEEeCCCc-HHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-cc---HHHHHHHHHHhcCCC
Confidence 4454555655 6999999999999999998887543 5555666665 22 235677777777764
No 38
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=53.27 E-value=86 Score=28.04 Aligned_cols=54 Identities=13% Similarity=0.181 Sum_probs=43.6
Q ss_pred CCcHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 184 GIPLSQVVALLAEEGLTVVNCISTKINERLL-HNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 184 ~~~L~~Il~aLeelgLdVv~as~S~~~~~~l-~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
++.|.++|..|...|+......+-...+... |.|.+.+++. ++-..++++|.++
T Consensus 219 pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~---~~d~~v~~AL~~L 273 (329)
T 3luy_A 219 PGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA---PWEERFRDALVEI 273 (329)
T ss_dssp TTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC---TTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC---cCCHHHHHHHHHH
Confidence 4469999999999999999999888888766 8999988765 4446677777664
No 39
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=52.99 E-value=34 Score=28.51 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=43.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHHhc
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKI--NERLLHNIESEVNDGGRNIDPFELQQKIMKLT 241 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~--~~~~l~ti~akv~~~~~~i~~~~l~~~L~~~I 241 (246)
+.|....++| .|.+|...|...|+.|.+.++... .+..-.+|.+.-.+ -..+.|.+.|.+++
T Consensus 32 LsVlVeN~pG-vLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e----~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 32 VSMLVHNKPG-VMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD----KTIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEECCTT-HHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT----THHHHHHHHHTTST
T ss_pred EEEEECCCCh-HHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH----HHHHHHHHHhcCcC
Confidence 4444455655 699999999999999999888653 24455666665332 35677888777754
No 40
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=52.45 E-value=15 Score=24.54 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 047562 113 VNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 113 i~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
-.||..|+++++.|+.....+..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999998877764
No 41
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=50.94 E-value=33 Score=30.08 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=45.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 175 VAINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLL-HNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 175 I~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l-~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
|.+....+.| .|.++|..|...|+......+-...+... |.|.+.+++. .+-..++++|.++
T Consensus 203 l~f~~~~~pG-aL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~---~~d~~v~~aL~~L 265 (283)
T 2qmx_A 203 IVFALPNEQG-SLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH---REDQNVHNALENL 265 (283)
T ss_dssp EEEEEECCTT-HHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC---TTSHHHHHHHHHH
T ss_pred EEEEcCCCCc-hHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC---CCcHHHHHHHHHH
Confidence 3333444444 69999999999999999999887766544 8888888865 3445677777654
No 42
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=47.91 E-value=18 Score=25.26 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047562 113 VNYIKNLQNRIQKLSEKRDE 132 (246)
Q Consensus 113 i~YIk~Lq~~v~~L~~~k~~ 132 (246)
-.||++|+.+|.+|+.....
T Consensus 28 ~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777655443
No 43
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=47.74 E-value=47 Score=29.55 Aligned_cols=62 Identities=10% Similarity=0.068 Sum_probs=43.8
Q ss_pred EEEecCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 176 AINTSFRKGIPLSQVVALLAEEGLTVVNCISTKINERLL-HNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 176 ~I~c~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l-~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
.+.....+++.|.++|..|...|+......+-...+... |.|.+.+++. ++-..++++|.++
T Consensus 205 ~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~---~~d~~v~~aL~~L 267 (313)
T 3mwb_A 205 VVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH---ATDSRVADALAGL 267 (313)
T ss_dssp EEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC---TTSHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC---CCcHHHHHHHHHH
Confidence 333432334569999999999999999988877666554 8888888754 3445666666554
No 44
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=46.77 E-value=22 Score=22.45 Aligned_cols=21 Identities=38% Similarity=0.757 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047562 114 NYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 114 ~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
.|+-+|++++++|+.+..+|.
T Consensus 3 aYl~eLE~r~k~le~~naeLE 23 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELE 23 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 477778877777777666654
No 45
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=45.97 E-value=23 Score=23.39 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 047562 114 NYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 114 ~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
.|+.+|+.+|..|+.+...|..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999988776654
No 46
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=44.79 E-value=25 Score=21.04 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047562 116 IKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 116 Ik~Lq~~v~~L~~~k~~l~ 134 (246)
+++|+.+|++|-.++..+.
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4567777777766665554
No 47
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=44.49 E-value=25 Score=21.47 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047562 116 IKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 116 Ik~Lq~~v~~L~~~k~~l~ 134 (246)
+++|+.+|++|-.++..++
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 4567777777766665554
No 48
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=44.45 E-value=32 Score=24.83 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 109 MNEAVNYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 109 l~~Ai~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
|..||+-|.-||.++++|+.+...+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998876644
No 49
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=41.76 E-value=59 Score=28.22 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=44.4
Q ss_pred eEEEEEe---cCCCCCcHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEecCCCCCCCHHHHHHHHHHh
Q 047562 173 VEVAINT---SFRKGIPLSQVVALLAEEGLTVVNCISTKINERLL-HNIESEVNDGGRNIDPFELQQKIMKL 240 (246)
Q Consensus 173 ~eI~I~c---~~~~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l-~ti~akv~~~~~~i~~~~l~~~L~~~ 240 (246)
.-|.+.. ..+. +.|.++|..|...|+......+-...+... |.|.+.++ . .+-..++++|.++
T Consensus 187 tsl~f~~~~~~~~p-GaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~---~~d~~v~~aL~~L 253 (267)
T 2qmw_A 187 TSLMFLITPMHDKP-GLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S---AITTDIKKVIAIL 253 (267)
T ss_dssp SEEEEEEEESSCCT-THHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C---CSCHHHHHHHHHH
T ss_pred EEEEEEcCCCCCCc-ChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c---CCcHHHHHHHHHH
Confidence 4455555 3444 469999999999999999998877766544 78888877 4 2335666666654
No 50
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=39.64 E-value=14 Score=24.91 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047562 113 VNYIKNLQNRIQKLSEKRDEL 133 (246)
Q Consensus 113 i~YIk~Lq~~v~~L~~~k~~l 133 (246)
-.||..|+++|+.|+.....+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999875543
No 51
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=37.62 E-value=38 Score=20.26 Aligned_cols=19 Identities=11% Similarity=0.359 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047562 116 IKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 116 Ik~Lq~~v~~L~~~k~~l~ 134 (246)
+++|+.+|++|-.++..++
T Consensus 2 MnQLEdKvEeLl~~~~~Le 20 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHH
Confidence 4577777777777766554
No 52
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=36.56 E-value=38 Score=22.62 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047562 112 AVNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 112 Ai~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
--.||.+|+.++..|+.+...|..
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888887776654
No 53
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.40 E-value=41 Score=22.79 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047562 112 AVNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 112 Ai~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
--.|+.+|+.+|+.|+.+...|..
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888877766653
No 54
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=33.82 E-value=31 Score=21.04 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047562 117 KNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 117 k~Lq~~v~~L~~~k~~l~ 134 (246)
++|+.+|++|..++..|.
T Consensus 4 nQLE~kVEeLl~~~~~Le 21 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLE 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHH
Confidence 556666666666555443
No 55
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.25 E-value=51 Score=19.81 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 047562 116 IKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 116 Ik~Lq~~v~~L~~~k~~l~~ 135 (246)
+.+|+.+|++|-.++++++.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~ 22 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEX 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 45778888888777766653
No 56
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=32.27 E-value=1.2e+02 Score=20.87 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=34.9
Q ss_pred cHHHHHHHHHhC----CceEEEEEEEeeCCeEEEEEEEEecCCCCC-CCHHHHHHHHHH
Q 047562 186 PLSQVVALLAEE----GLTVVNCISTKINERLLHNIESEVNDGGRN-IDPFELQQKIMK 239 (246)
Q Consensus 186 ~L~~Il~aLeel----gLdVv~as~S~~~~~~l~ti~akv~~~~~~-i~~~~l~~~L~~ 239 (246)
.+.+|.+.+.+. -.+|.+..+-..|...+.++|+.+.+. .. ..++++.+++.+
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~-~~~~~~h~i~~~ie~ 68 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGD-TPVEEAHRLCDELER 68 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTT-CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCC-CcHHHHHHHHHHHHH
Confidence 355666666544 478888888888888888999999765 22 233444444443
No 57
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=31.45 E-value=36 Score=20.47 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047562 116 IKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 116 Ik~Lq~~v~~L~~~k~~l~ 134 (246)
+++|+.+|++|-.++..++
T Consensus 3 MnQLEdkVEeLl~~~~~Le 21 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLA 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 3567777777776666554
No 58
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=30.74 E-value=18 Score=24.81 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047562 112 AVNYIKNLQNRIQKLSEKRDEL 133 (246)
Q Consensus 112 Ai~YIk~Lq~~v~~L~~~k~~l 133 (246)
.-.||..|+++|+.|+.....+
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3479999999999998775544
No 59
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.20 E-value=56 Score=21.63 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047562 113 VNYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 113 i~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
-.|+..|+.+++.|+.+...|.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777777666554
No 60
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=29.63 E-value=61 Score=19.46 Aligned_cols=19 Identities=0% Similarity=0.156 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047562 116 IKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 116 Ik~Lq~~v~~L~~~k~~l~ 134 (246)
+.+|+.+|++|-.++..++
T Consensus 3 MnQLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 4567777777766665554
No 61
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=29.22 E-value=60 Score=17.87 Aligned_cols=17 Identities=24% Similarity=0.557 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047562 108 HMNEAVNYIKNLQNRIQ 124 (246)
Q Consensus 108 il~~Ai~YIk~Lq~~v~ 124 (246)
-|-+|-+|+.+|..+++
T Consensus 5 gliearkyleqlhrklk 21 (26)
T 1xkm_B 5 GLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 37788999998888764
No 62
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=27.78 E-value=42 Score=23.66 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047562 113 VNYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 113 i~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
-.||..|+++++.|+....++.
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3599999999999998866544
No 63
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=27.60 E-value=69 Score=19.26 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047562 116 IKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 116 Ik~Lq~~v~~L~~~k~~l~ 134 (246)
+++|+.+|++|-.++..+.
T Consensus 3 MnQledKvEel~~~~~~l~ 21 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNA 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 4566666666666555443
No 64
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=26.05 E-value=60 Score=22.36 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047562 113 VNYIKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 113 i~YIk~Lq~~v~~L~~~k~~l~ 134 (246)
-.||..|+++++.|+.....+.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3599999999999998766553
No 65
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=25.57 E-value=53 Score=19.77 Aligned_cols=19 Identities=11% Similarity=0.457 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047562 116 IKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 116 Ik~Lq~~v~~L~~~k~~l~ 134 (246)
+++|+.+|++|-.++..+.
T Consensus 3 MnQLEdKvEeLl~~~~~L~ 21 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHIC 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHH
Confidence 4677788887777766554
No 66
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.42 E-value=67 Score=19.20 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047562 117 KNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 117 k~Lq~~v~~L~~~k~~l~ 134 (246)
.+|+++|++|-.++.+++
T Consensus 3 ~QLE~kVEeLl~~n~~Le 20 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLE 20 (33)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHH
Confidence 456777777766665554
No 67
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=25.16 E-value=88 Score=17.64 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 047562 106 SDHMNEAVNYIKNLQN 121 (246)
Q Consensus 106 ~~il~~Ai~YIk~Lq~ 121 (246)
.++|-+|.+|+...+.
T Consensus 5 vq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 5 IQMLLEAADYLERRER 20 (26)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4679999999986654
No 68
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=25.12 E-value=2.1e+02 Score=21.24 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=32.0
Q ss_pred CCCcHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 047562 183 KGIPLSQVVALLAEEGLTVVNCISTKINERLLHNIESEVNDGGRNIDPFELQQKIMK 239 (246)
Q Consensus 183 ~~~~L~~Il~aLeelgLdVv~as~S~~~~~~l~ti~akv~~~~~~i~~~~l~~~L~~ 239 (246)
+++.+.+++++|.+.|+.|.+..++..++.....|.. . +.+...+.|.+
T Consensus 82 ~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~--~------d~~~A~~~L~~ 130 (144)
T 2f06_A 82 VPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP--S------NMDKCIEVLKE 130 (144)
T ss_dssp STTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE--S------CHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe--C------CHHHHHHHHHH
Confidence 3446999999999999999765544234544444433 2 45566666654
No 69
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=24.96 E-value=1.7e+02 Score=21.05 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCC--ceEEEEEEEeeCCeEEEEEEEEecCCCCC-CCHHHHHHHHHHh
Q 047562 187 LSQVVALLAEEG--LTVVNCISTKINERLLHNIESEVNDGGRN-IDPFELQQKIMKL 240 (246)
Q Consensus 187 L~~Il~aLeelg--LdVv~as~S~~~~~~l~ti~akv~~~~~~-i~~~~l~~~L~~~ 240 (246)
+.+|.+++.+.. .+|.+..+-..|+.++.++++.+.+. .. .++.++.+++.+.
T Consensus 12 ~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~-~sv~eah~i~~~ie~~ 67 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGK-MSVKDAHELTVKIRKE 67 (107)
T ss_dssp HHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCC-CCHHHHHHHHHHHHHH
Confidence 566777776553 67888877778888888999999765 22 2334455444433
No 70
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=24.95 E-value=1.2e+02 Score=24.78 Aligned_cols=60 Identities=25% Similarity=0.273 Sum_probs=40.5
Q ss_pred hhhhhhHHHHHHHH-HHHHHHHHHHhcCCCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047562 68 MKIMRRDIERHRRQ-EMSTLYRSLRSLLPLEYLKGKRSMSDHMNEAVNYIKNLQNRIQKLSEKRDEL 133 (246)
Q Consensus 68 ~~~~h~~~ER~RR~-~mn~~f~~LrsllP~~~~~~k~s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l 133 (246)
.+......||.+++ +-...+..||..+-..+ .++-+...=.||+-|.+++..++.+..+.
T Consensus 37 ~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gt------t~~~i~~m~~yI~llrErea~lEqkVaeq 97 (169)
T 3k29_A 37 EKLRERESERDKVKNHYMQKIRQLREQLDDGT------TSDAILKMKAYIKVVAIQLSEEEEKVNKQ 97 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666553 23344778888765443 34447778899999999999998776544
No 71
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.40 E-value=57 Score=19.61 Aligned_cols=19 Identities=11% Similarity=0.298 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047562 116 IKNLQNRIQKLSEKRDELR 134 (246)
Q Consensus 116 Ik~Lq~~v~~L~~~k~~l~ 134 (246)
+++|+.+|++|-.++..++
T Consensus 3 M~QLEdKVEeLl~~n~~Le 21 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIE 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 3567777777766665554
No 72
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=23.32 E-value=1e+02 Score=25.45 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=27.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047562 104 SMSDHMNEAVNYIKNLQNRIQKLSEKRDELRR 135 (246)
Q Consensus 104 s~~~il~~Ai~YIk~Lq~~v~~L~~~k~~l~~ 135 (246)
.+.+++.-+++-+..|+.+++.|+++.+.|..
T Consensus 142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 142 VIRELICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888889999999999999999888765
No 73
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.00 E-value=75 Score=23.46 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047562 109 MNEAVNYIKNLQNRIQKLSEK 129 (246)
Q Consensus 109 l~~Ai~YIk~Lq~~v~~L~~~ 129 (246)
.+.|-+||..|.++|+-|++.
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~ 85 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEED 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHH
Confidence 667889999999999888764
No 74
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=21.18 E-value=88 Score=17.36 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047562 115 YIKNLQNRIQKLSEKRD 131 (246)
Q Consensus 115 YIk~Lq~~v~~L~~~k~ 131 (246)
|+-+|+.++-+|+-+..
T Consensus 1 yvyqlkdevgelkgevr 17 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVR 17 (27)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHH
Confidence 45566666666655443
Done!