BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047563
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 67/104 (64%)
Query: 29 MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88
M+ LD+S N L+G +P EIG + + +LNL HN +SGSIP +L+ + LDLS+N+L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 89 GQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGN 132
G+IP + L L+ ++S NNLSG IP+ GQ+ TF + N
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 56/93 (60%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
SN + +V L LS N L+G +PS +G L K+R L L N L G IP+ +K +E+L L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 84 NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
N L+G+IP+ L L+ ++S N L+G IP
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 20 LYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIES 79
L N +NLN+ + LS N+LTG +P IG L+ + +L LS+N SG+IP + + +
Sbjct: 486 LSNCTNLNW---ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 80 LDLSNNRLSGQIPAQLIE 97
LDL+ N +G IPA + +
Sbjct: 543 LDLNTNLFNGTIPAAMFK 560
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR 86
N + L L N TG +P + + ++ L+LS N LSG+IP S +L + L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 87 LSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
L G+IP +L+ + L + +N+L+G IP
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
L L N LTG +PS + + + ++LS+N L+G IP+ L+ + L LSNN SG I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 92 PAQLIELNFLSNFNVSYNNLSGLIP 116
PA+L + L +++ N +G IP
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 29 MVGLDLSCNQLTGNVPSEIGDLQK--IRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR 86
++ LDLS N +G + + K ++ L L +N +G IP + SN + SL LS N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 87 LSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDET 127
LSG IP+ L L+ L + + N L G IP + Y ET
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
LD+S N + +P +GD ++ L++S N LSG R+ S ++ L++S+N+ G I
Sbjct: 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 92 PAQLIELNFLSNFNVSYNNLSGLIPD--KGQYSTFDETSYRGNLY 134
P + L L +++ N +G IPD G T GN +
Sbjct: 264 PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 28/118 (23%)
Query: 27 NYMVGLDLSCNQLTGNVPSEIG-------------------------DLQKIRVLNLSHN 61
+ + GLDLS N G VP G ++ ++VL+LS N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 62 CLSGSIPRSFSNLKM-IESLDLSNNRLSGQIPAQLIE--LNFLSNFNVSYNNLSGLIP 116
SG +P S +NL + +LDLS+N SG I L + N L + N +G IP
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 57 NLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
N++ G +F N + LD+S N LSG IP ++ + +L N+ +N++SG IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 117 DK 118
D+
Sbjct: 674 DE 675
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 32 LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
L L+ N+ TG +P + G + L+LS N G++P F + ++ESL LS+N SG+
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 91 IPAQ-LIELNFLSNFNVSYNNLSGLIPD 117
+P L+++ L ++S+N SG +P+
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 29 MVGLDLSCNQLTGNVPS--EIGDLQKIRVLNLSHNCLSGSIPRSFSN---LKMIESLDLS 83
+ LDLS N L+G V + +G ++ LN+S N L P S L +E LDLS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLS 159
Query: 84 NNRLSG 89
N +SG
Sbjct: 160 ANSISG 165
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 50 LQKIRVLNLSHNCLSGSIPRSF---SNLKMIESLDLSNNRLSGQIP-AQLIELNFLSNFN 105
L + VL+LS N +SG+ + ++ L +S N++SG + ++ + L FL +
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL---D 206
Query: 106 VSYNNLSGLIPDKGQYSTFDETSYRGN 132
VS NN S IP G S GN
Sbjct: 207 VSSNNFSTGIPFLGDCSALQHLDISGN 233
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 67/104 (64%)
Query: 29 MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88
M+ LD+S N L+G +P EIG + + +LNL HN +SGSIP +L+ + LDLS+N+L
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 89 GQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGN 132
G+IP + L L+ ++S NNLSG IP+ GQ+ TF + N
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 734
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 56/93 (60%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
SN + +V L LS N L+G +PS +G L K+R L L N L G IP+ +K +E+L L
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 84 NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
N L+G+IP+ L L+ ++S N L+G IP
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 20 LYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIES 79
L N +NLN+ + LS N+LTG +P IG L+ + +L LS+N SG+IP + + +
Sbjct: 483 LSNCTNLNW---ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 80 LDLSNNRLSGQIPAQLIE 97
LDL+ N +G IPA + +
Sbjct: 540 LDLNTNLFNGTIPAAMFK 557
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR 86
N + L L N TG +P + + ++ L+LS N LSG+IP S +L + L L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 87 LSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
L G+IP +L+ + L + +N+L+G IP
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
L L N LTG +PS + + + ++LS+N L+G IP+ L+ + L LSNN SG I
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 92 PAQLIELNFLSNFNVSYNNLSGLIP 116
PA+L + L +++ N +G IP
Sbjct: 528 PAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 29 MVGLDLSCNQLTGNVPSEIGDLQK--IRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR 86
++ LDLS N +G + + K ++ L L +N +G IP + SN + SL LS N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 87 LSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDET 127
LSG IP+ L L+ L + + N L G IP + Y ET
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 467
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
LD+S N + +P +GD ++ L++S N LSG R+ S ++ L++S+N+ G I
Sbjct: 202 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 92 PAQLIELNFLSNFNVSYNNLSGLIPD--KGQYSTFDETSYRGNLY 134
P + L L +++ N +G IPD G T GN +
Sbjct: 261 PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 28/116 (24%)
Query: 29 MVGLDLSCNQLTGNVPSEIG-------------------------DLQKIRVLNLSHNCL 63
+ GLDLS N G VP G ++ ++VL+LS N
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 64 SGSIPRSFSNLKM-IESLDLSNNRLSGQIPAQLIE--LNFLSNFNVSYNNLSGLIP 116
SG +P S +NL + +LDLS+N SG I L + N L + N +G IP
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 57 NLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
N++ G +F N + LD+S N LSG IP ++ + +L N+ +N++SG IP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 117 DK 118
D+
Sbjct: 671 DE 672
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 32 LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
L L+ N+ TG +P + G + L+LS N G++P F + ++ESL LS+N SG+
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 91 IPAQ-LIELNFLSNFNVSYNNLSGLIPD 117
+P L+++ L ++S+N SG +P+
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 29 MVGLDLSCNQLTGNVPS--EIGDLQKIRVLNLSHNCLSGSIPRSFSN---LKMIESLDLS 83
+ LDLS N L+G V + +G ++ LN+S N L P S L +E LDLS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLS 156
Query: 84 NNRLSG 89
N +SG
Sbjct: 157 ANSISG 162
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 50 LQKIRVLNLSHNCLSGSIPRSF---SNLKMIESLDLSNNRLSGQIP-AQLIELNFLSNFN 105
L + VL+LS N +SG+ + ++ L +S N++SG + ++ + L FL +
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL---D 203
Query: 106 VSYNNLSGLIPDKGQYSTFDETSYRGN 132
VS NN S IP G S GN
Sbjct: 204 VSSNNFSTGIPFLGDCSALQHLDISGN 230
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 47/156 (30%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKI-RVLNLSHNCLSGSIPRSFSNL-------- 74
S+L +VG+ N+++G +P G K+ + +S N L+G IP +F+NL
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205
Query: 75 --------------------------------------KMIESLDLSNNRLSGQIPAQLI 96
K + LDL NNR+ G +P L
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 97 ELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGN 132
+L FL + NVS+NNL G IP G FD ++Y N
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 37 NQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLI 96
N L G +P I L ++ L ++H +SG+IP S +K + +LD S N LSG +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 97 ELNFLSNFNVSYNNLSGLIPDKGQYSTFDE 126
L L N +SG IPD Y +F +
Sbjct: 147 SLPNLVGITFDGNRISGAIPD--SYGSFSK 174
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNL-KMIESLDL 82
S + +V LD S N L+G +P I L + + N +SG+IP S+ + K+ S+ +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 83 SNNRLSGQIPAQLIELNFLSNFNVSYNNLSG 113
S NRL+G+IP LN L+ ++S N L G
Sbjct: 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 31 GLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR 86
GLDL N++ G +P + L+ + LN+S N L G IP+ NL+ + +NN+
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 25 NLNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
N++ + LD+S N L + + I VLNLS N L+GS+ R ++ LDL
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458
Query: 84 NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
NNR+ IP + L L NV+ N L +PD
Sbjct: 459 NNRIMS-IPKDVTHLQALQELNVASNQLKS-VPD 490
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 31 GLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
L LS N ++ +I L ++RVL LSHN + F + +E LD+S+NRL
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN- 114
Query: 91 IPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRG 131
+ L + ++S+N+ ++P ++ + ++ G
Sbjct: 115 --ISCCPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLG 152
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCL-SGSIPRSFSNLKMIESLDL 82
S+L +V L+ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 102 SSLQKLVALETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 83 SNNRL 87
S+N++
Sbjct: 159 SSNKI 163
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCL-SGSIPRSFSNLKMIESLDL 82
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 100 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 83 SNNRL 87
S+N++
Sbjct: 157 SSNKI 161
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN 61
+ L + LDLS QL P+ L ++VLN+SHN
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 50 LQKIRVLNLSHNCLSGS-IPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY 108
L + VL ++ N + +P F+ L+ + LDLS +L P L+ L N+S+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 109 NNLSGL 114
NN L
Sbjct: 504 NNFFSL 509
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCL-SGSIPRSFSNLKMIESLDL 82
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 124 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180
Query: 83 SNNRL 87
S+N++
Sbjct: 181 SSNKI 185
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN 61
+ L + LDLS QL P+ L ++VLN+SHN
Sbjct: 491 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 50 LQKIRVLNLSHNCLSGS-IPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY 108
L + VL ++ N + +P F+ L+ + LDLS +L P L+ L N+S+
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 109 NNLSGL 114
NN L
Sbjct: 528 NNFFSL 533
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCL-SGSIPRSFSNLKMIESLDL 82
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 100 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 83 SNNRL 87
S+N++
Sbjct: 157 SSNKI 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCL-SGSIPRSFSNLKMIESLDL 82
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 101 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Query: 83 SNNRL 87
S+N++
Sbjct: 158 SSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCL-SGSIPRSFSNLKMIESLDL 82
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 102 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 83 SNNRL 87
S+N++
Sbjct: 159 SSNKI 163
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCL-SGSIPRSFSNLKMIESLDL 82
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 100 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 83 SNNRL 87
S+N++
Sbjct: 157 SSNKI 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCL-SGSIPRSFSNLKMIESLDL 82
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 101 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Query: 83 SNNRL 87
S+N++
Sbjct: 158 SSNKI 162
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 20/114 (17%)
Query: 56 LNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLI 115
LN+S N L+ +I R I+ LDL +N++ IP Q+++L L NV+ N L +
Sbjct: 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-V 459
Query: 116 PDKGQYSTFDETSYRGNLYL-------SCPTIN-----KSCNSAEEKPAIKSKG 157
PD FD + ++L SCP I+ + NS +E+ + K G
Sbjct: 460 PD----GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG 509
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRL 87
L++S N ++ S+I L K+R+L +SHN + F + +E LDLS+N+L
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 12/97 (12%)
Query: 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN 85
LN ++GL+L NQ+T P + +L KI L LS N L + + L+ I++LDL++
Sbjct: 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 117
Query: 86 RLSGQIPAQLIELNFLSNFNVSY---NNLSGLIPDKG 119
+++ P L LSN V Y N ++ + P G
Sbjct: 118 QITDVTP-----LAGLSNLQVLYLDLNQITNISPLAG 149
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN 85
LN ++GL+L NQ+T P + +L KI L LS N L + + L+ I++LDL++
Sbjct: 68 LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 123
Query: 86 RLSGQIPAQLIELNFLSNFNVSY 108
+++ P L LSN V Y
Sbjct: 124 QITDVTP-----LAGLSNLQVLY 141
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 5 PQQVKVEFVTKNRYELYNG--SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNC 62
P+ V ++ N++ L SN ++ +DLS N+++ ++ ++ L LS+N
Sbjct: 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 63 LSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL 111
L PR+F LK + L L N +S +L+ LS+ + N L
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 43 VPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS 102
VP E+ + + + +++LS+N +S +SFSN+ + +L LS NRL P L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 103 NFNVSYNNLSGLIPDKGQYSTFDETSY 129
++ N++S ++P+ G ++ S+
Sbjct: 106 LLSLHGNDIS-VVPE-GAFNDLSALSH 130
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 20 LYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIES 79
L N +NLN L+LS N ++ S + L ++ LN S N ++ P +NL +E
Sbjct: 125 LKNLTNLNR---LELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLER 177
Query: 80 LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGN 132
LD+S+N++S + L +L L + + N +S + P G + DE S GN
Sbjct: 178 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN 227
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 34/179 (18%)
Query: 50 LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS----GQIPAQLIELNFLSNFN 105
L ++VL L+HN L+ P FS+L + L L++NRL+ +PA L L +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL------D 532
Query: 106 VSYNNLSGLIPD-----------------KGQYSTFDETSYRGNLYLSCPTINKSCNSAE 148
+S N L PD + + STF N+ ++ P + C +
Sbjct: 533 ISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPD 592
Query: 149 EKPAIK--SKGREDEDDSAIDMVSLYWS-FGASYVTVILGLLAILWINSFWRKRWFYFI 204
+ S E D+ + + SL +S F VT+ L L+ IL + F R F FI
Sbjct: 593 SFSGVSLFSLSTEGCDEEEV-LKSLKFSLFIVCTVTLTLFLMTILTVTKF---RGFCFI 647
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 32 LDLSCNQLTGN--VPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG 89
LDLS N + + ++ +L ++ LNLSHN G ++F +E LDL+ RL
Sbjct: 352 LDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHI 411
Query: 90 QIPAQLIE-LNFLSNFNVSY 108
P + L+FL N++Y
Sbjct: 412 NAPQSPFQNLHFLQVLNLTY 431
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP 68
+++ L L+ N LT +P+EI +L +RVL+LSHN L+ S+P
Sbjct: 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP 286
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
LDLS N L+ +++ K+ +LNLS N L ++ +L + +LDL+NN + +
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL 96
Query: 92 PAQLIELNFLSNFNVS 107
IE +N N+S
Sbjct: 97 VGPSIETLHAANNNIS 112
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 34 LSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA 93
L Q+ ++P+ I VLNL+HN L +F+ + SLD+ N +S P
Sbjct: 19 LKLTQVPDDLPT------NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
Query: 94 QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKPAI 153
+L L N+ +N LS L DK TF + L+L +I K N+ P +
Sbjct: 73 LCQKLPMLKVLNLQHNELSQL-SDK----TFAFCTNLTELHLMSNSIQKIKNN----PFV 123
Query: 154 KSK 156
K K
Sbjct: 124 KQK 126
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 5 PQQVKVEFVTKNRYELYNGSNL---NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN 61
P + V +T N+ +N + + LD+ N ++ P L ++VLNL HN
Sbjct: 29 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 88
Query: 62 CLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSG 113
LS ++F+ + L L +N + ++ L ++S+N LS
Sbjct: 89 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 34 LSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA 93
L Q+ ++P+ I VLNL+HN L +F+ + SLD+ N +S P
Sbjct: 14 LKLTQVPDDLPT------NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
Query: 94 QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKPAI 153
+L L N+ +N LS L DK TF + L+L +I K N+ P +
Sbjct: 68 LCQKLPMLKVLNLQHNELSQL-SDK----TFAFCTNLTELHLMSNSIQKIKNN----PFV 118
Query: 154 KSK 156
K K
Sbjct: 119 KQK 121
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 5 PQQVKVEFVTKNRYELYNGSNL---NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN 61
P + V +T N+ +N + + LD+ N ++ P L ++VLNL HN
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 62 CLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSG 113
LS ++F+ + L L +N + ++ L ++S+N LS
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
G L + LD+S N+LT + L +++ L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 83 SNNRLSGQIPAQLIELNFLSNFNV 106
+NN+L+ ++PA L LN L N +
Sbjct: 156 ANNQLT-ELPAGL--LNGLENLDT 176
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 48 GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107
G L + L+LSHN L S+P L + LD+S NRL+ L L L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 108 YNNLSGLIP 116
N L L P
Sbjct: 133 GNELKTLPP 141
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
G L + LD+S N+LT + L +++ L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 83 SNNRLSGQIPAQLIELNFLSNFNV 106
+NN+L+ ++PA L LN L N +
Sbjct: 156 ANNQLT-ELPAGL--LNGLENLDT 176
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 48 GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107
G L + L+LSHN L S+P L + LD+S NRL+ L L L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 108 YNNLSGLIP 116
N L L P
Sbjct: 133 GNELKTLPP 141
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 50 LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN 109
L + LNLS N L R F NL +E LDLS N + + L L + N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 110 NLSGLIPDKGQYSTFDETSYRGNLYL-------SCPTIN-----KSCNSAEEKPAIKSKG 157
L +PD FD + ++L SCP I+ + NS +E+ + K G
Sbjct: 382 QLKS-VPD----GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG 436
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 26 LNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSN 84
L +++ L+LS N L G++ S + +L K+ VL+LS+N + +SF L ++ L L
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 85 NRL 87
N+L
Sbjct: 381 NQL 383
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 34 LSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA 93
L Q+ ++P+ I VLNL+HN L +F+ + SLD+ N +S P
Sbjct: 24 LKLTQVPDDLPT------NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 77
Query: 94 QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKPAI 153
+L L N+ +N LS L DK TF + L+L +I K N+ P +
Sbjct: 78 LCQKLPMLKVLNLQHNELSQL-SDK----TFAFCTNLTELHLMSNSIQKIKNN----PFV 128
Query: 154 KSK 156
K K
Sbjct: 129 KQK 131
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 5 PQQVKVEFVTKNRYELYNGSNL---NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN 61
P + V +T N+ +N + + LD+ N ++ P L ++VLNL HN
Sbjct: 34 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 93
Query: 62 CLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSG 113
LS ++F+ + L L +N + ++ L ++S+N LS
Sbjct: 94 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
LDLS N L+ +++ K+ +LNLS N L ++ +L + +LDL+NN + +
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL 96
Query: 92 PAQLIELNFLSNFNVS 107
IE +N N+S
Sbjct: 97 VGPSIETLHAANNNIS 112
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
G L + LD+S N+LT + L +++ L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 83 SNNRLSGQIPAQLIELNFLSNFNV 106
+NN+L+ ++PA L LN L N +
Sbjct: 156 ANNQLT-ELPAGL--LNGLENLDT 176
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 48 GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107
G L + L+LSHN L S+P L + LD+S NRL+ L L L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 108 YNNLSGLIP 116
N L L P
Sbjct: 133 GNELKTLPP 141
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
G L + LD+S N+LT + L +++ L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 83 SNNRLSGQIPAQLIELNFLSNFNV 106
+NN+L+ ++PA L LN L N +
Sbjct: 156 ANNQLT-ELPAGL--LNGLENLDT 176
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 48 GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107
G L + L+LSHN L S+P L + LD+S NRL+ L L L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 108 YNNLSGLIP 116
N L L P
Sbjct: 133 GNELKTLPP 141
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 19 ELYNGSNLNYMVGLDLSCNQL-TGNV--PSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLK 75
+L++G L + L+L N GN+ + + L ++ +L LS LS +F++LK
Sbjct: 443 QLFDG--LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500
Query: 76 MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
M+ +DLS+NRL+ L L + N++ N++S ++P
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILP 540
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 32 LDLSCNQL-TGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR 86
LDL+ +L + S +L ++VLNLSH+ L S + F L ++ L+L N
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 20 LYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIES 79
L N +NLN L+LS N ++ S + L ++ L+ S N ++ P +NL +E
Sbjct: 125 LKNLTNLNR---LELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 80 LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGN 132
LD+S+N++S + L +L L + + N +S + P G + DE S GN
Sbjct: 178 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN 227
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 20 LYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIES 79
L N +NLN L+LS N ++ S + L ++ L+ S N ++ P +NL +E
Sbjct: 125 LKNLTNLNR---LELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 80 LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGN 132
LD+S+N++S + L +L L + + N +S + P G + DE S GN
Sbjct: 178 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN 227
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
G L + LD+S N+LT + L +++ L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 83 SNNRLSGQIPAQLIELNFLSNFNV 106
+NN L+ ++PA L LN L N +
Sbjct: 156 ANNNLT-ELPAGL--LNGLENLDT 176
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 48 GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107
G L + L+LSHN L S+P L + LD+S NRL+ L L L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 108 YNNLSGLIP 116
N L L P
Sbjct: 133 GNELKTLPP 141
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
G L + LD+S N+LT + L +++ L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 83 SNNRLSGQIPAQLIELNFLSNFNV 106
+NN L+ ++PA L LN L N +
Sbjct: 156 ANNNLT-ELPAGL--LNGLENLDT 176
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 48 GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107
G L + L+LSHN L S+P L + LD+S NRL+ L L L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 108 YNNLSGLIP 116
N L L P
Sbjct: 133 GNELKTLPP 141
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
G L + LD+S N+LT + L +++ L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 83 SNNRLSGQIPAQLIELNFLSNFNV 106
+NN L+ ++PA L LN L N +
Sbjct: 156 ANNDLT-ELPAGL--LNGLENLDT 176
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 48 GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107
G L + L+LSHN L S+P L + LD+S NRL+ L L L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 108 YNNLSGLIP 116
N L L P
Sbjct: 133 GNELKTLPP 141
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
G L + LD+S N+LT + L +++ L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 83 SNNRLSGQIPAQLIELNFLSNFNV 106
+NN L+ ++PA L LN L N +
Sbjct: 156 ANNNLT-ELPAGL--LNGLENLDT 176
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 48 GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107
G L + L+LSHN L S+P L + LD+S NRL+ L L L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 108 YNNLSGLIP 116
N L L P
Sbjct: 133 GNELKTLPP 141
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
G L + LD+S N+LT + L +++ L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 83 SNNRLSGQIPAQLIELNFLSNFNV 106
+NN L+ ++PA L LN L N +
Sbjct: 156 ANNNLT-ELPAGL--LNGLENLDT 176
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 48 GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107
G L + L+LSHN L S+P L + LD+S NRL+ L L L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 108 YNNLSGLIP 116
N L L P
Sbjct: 133 GNELKTLPP 141
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 53 IRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 112
+RVL+L+H L+ + L ++ LDLS+NRL +P L L L S N L
Sbjct: 443 VRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE 499
Query: 113 GL 114
+
Sbjct: 500 NV 501
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
LDL N+L+ L K+R+L L+ N L F LK +E+L +++N+L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 92 PAQLIELNFLSNFNVSYNNLSGLIP 116
+L L+ + N L L P
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPP 126
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 53 IRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 112
+RVL+L+H L+ + L ++ LDLS+NRL +P L L L S N L
Sbjct: 443 VRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE 499
Query: 113 GL 114
+
Sbjct: 500 NV 501
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
G L + LD+S N+LT + L +++ L L N L P + +E L L
Sbjct: 97 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 156
Query: 83 SNNRLSGQIPAQLIELNFLSNFNV 106
+NN L+ ++PA L LN L N +
Sbjct: 157 ANNNLT-ELPAGL--LNGLENLDT 177
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 48 GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107
G L + L+LSHN L S+P L + LD+S NRL+ L L L +
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 108 YNNLSGLIP 116
N L L P
Sbjct: 134 GNELKTLPP 142
>pdb|2BBJ|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2HN2|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|C Chain C, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
Length = 354
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 168 MVSLYWSFGASYVTVILGLLAILWINSFWRKRWF 201
M L W +G V ++G++A++ + F +K+W
Sbjct: 321 MPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKWL 354
>pdb|2IUB|A Chain A, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|B Chain B, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|C Chain C, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|D Chain D, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|E Chain E, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|F Chain F, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|G Chain G, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|H Chain H, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|I Chain I, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|J Chain J, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution
Length = 363
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 168 MVSLYWSFGASYVTVILGLLAILWINSFWRKRWF 201
M L W +G V ++G++A++ + F +K+W
Sbjct: 330 MPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKWL 363
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 44 PSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIE 97
P +K+R ++LS+N +S P +F L+ + SL L N+++ ++P L E
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 38 QLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIE 97
++ N+P I +++ L N + P +FS K + +DLSNN++S P
Sbjct: 25 EIPTNLPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78
Query: 98 LNFLSNFNVSYNNLSGL 114
L L++ + N ++ L
Sbjct: 79 LRSLNSLVLYGNKITEL 95
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 44 PSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIE 97
P +K+R ++LS+N +S P +F L+ + SL L N+++ ++P L E
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 38 QLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIE 97
++ N+P I +++ L N + P +FS K + +DLSNN++S P
Sbjct: 25 EIPTNLPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78
Query: 98 LNFLSNFNVSYNNLSGL 114
L L++ + N ++ L
Sbjct: 79 LRSLNSLVLYGNKITEL 95
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 16 NRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLK 75
N ++ N + L + L+LS N+L P L +R L L H ++ +F +LK
Sbjct: 167 NLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK 226
Query: 76 MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN 109
+E L+LS+N L L+ L ++++N
Sbjct: 227 SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 24/128 (18%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN------CLSGSIP--------- 68
+NL + GL L NQ+T P + +L + L LS N LSG
Sbjct: 104 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQ 161
Query: 69 ----RSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTF 124
+ +NL +E LD+S+N++S + L +L L + + N +S + P G +
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNL 218
Query: 125 DETSYRGN 132
DE S GN
Sbjct: 219 DELSLNGN 226
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 24/128 (18%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN------CLSGSIP--------- 68
+NL + GL L NQ+T P + +L + L LS N LSG
Sbjct: 109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ 166
Query: 69 ----RSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTF 124
+ +NL +E LD+S+N++S + L +L L + + N +S + P G +
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNL 223
Query: 125 DETSYRGN 132
DE S GN
Sbjct: 224 DELSLNGN 231
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 24/128 (18%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN------CLSGSIP--------- 68
+NL + GL L NQ+T P + +L + L LS N LSG
Sbjct: 104 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQ 161
Query: 69 ----RSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTF 124
+ +NL +E LD+S+N++S + L +L L + + N +S + P G +
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNL 218
Query: 125 DETSYRGN 132
DE S GN
Sbjct: 219 DELSLNGN 226
>pdb|4EEB|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EED|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Presence
Length = 330
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 168 MVSLYWSFGASYVTVILGLLAILWINSFWRKRWF 201
M L W +G V ++G++A++ + F +K+W
Sbjct: 297 MPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKWL 330
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 24/128 (18%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN------CLSGSIP--------- 68
+NL + GL L NQ+T P + +L + L LS N LSG
Sbjct: 108 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ 165
Query: 69 ----RSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTF 124
+ +NL +E LD+S+N++S + L +L L + + N +S + P G +
Sbjct: 166 VTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNL 222
Query: 125 DETSYRGN 132
DE S GN
Sbjct: 223 DELSLNGN 230
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
LDL N++ E + L L+ N +S P +F+NL + +L L +NRL
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 92 PAQLIELNFLSNFNVSYNNLSGLI 115
L+ L+ ++S N + L+
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILL 120
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 27 NYMVGLDLS------CNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESL 80
N + GL+L+ CN LT + L +R LNLS+N +S L ++ +
Sbjct: 219 NCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277
Query: 81 DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
L +L+ P LN+L NVS N L+ L
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 16 NRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLK 75
N ++ N + L + L+LS N+L P L +R L L H ++ +F +LK
Sbjct: 167 NLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK 226
Query: 76 MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN 109
+E L+LS+N L L+ L ++++N
Sbjct: 227 SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 25/113 (22%)
Query: 21 YNGSNLNYMVGLDLSCNQLTG---NVPSEIGDLQ------------------KIRVLNLS 59
++G LNY L +S +LTG ++P + +L K+ L L
Sbjct: 169 FDGLKLNY---LRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225
Query: 60 HNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 112
HN + S S L + L L NN+LS ++PA L +L L + NN++
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRL---S 88
LDL N ++ + LQ + L L +N +S ++FS L+ ++ L +S N L
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 89 GQIPAQLIELNFLSN 103
+P+ L+EL N
Sbjct: 119 PNLPSSLVELRIHDN 133
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 57 NLSHNCLSG----SIP-RSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL 111
NL+H L G S+P R+F L ++ L L NR++ P +L L + NNL
Sbjct: 153 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Query: 112 SGL 114
S L
Sbjct: 213 SAL 215
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 57 NLSHNCLSG----SIP-RSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL 111
NL+H L G S+P R+F L ++ L L NR++ P +L L + NNL
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 112 SGL 114
S L
Sbjct: 214 SAL 216
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 53 IRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 112
I VLNL+HN L P +F+ + LD N +S P L L N+ +N LS
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 113 GL 114
+
Sbjct: 87 QI 88
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 29 MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88
+ L L N++T + + L + L LS N +S S +N + L L+NN+L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 89 GQIPAQLIELNFLSNFNVSYNNLSGL 114
++P L + ++ + NN+S +
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAI 278
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 33 DLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIP 92
DL ++ ++P + +L+L +N ++ F NLK + +L L NN++S P
Sbjct: 40 DLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93
Query: 93 AQLIELNFLSNFNVSYNNLSGLIPDK 118
L L +S N L L P+K
Sbjct: 94 GAFAPLVKLERLYLSKNQLKEL-PEK 118
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 29 MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88
+ L L N++T + + L + L LS N +S S +N + L L+NN+L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 89 GQIPAQLIELNFLSNFNVSYNNLSGL 114
++P L + ++ + NN+S +
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAI 278
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 33 DLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIP 92
DL ++ ++P + +L+L +N ++ F NLK + +L L NN++S P
Sbjct: 40 DLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93
Query: 93 AQLIELNFLSNFNVSYNNLSGLIPDK 118
L L +S N L L P+K
Sbjct: 94 GAFAPLVKLERLYLSKNQLKEL-PEK 118
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 47 IGDLQKIRVLNLSHNCL-SGSIPRSFSNLKMIESLDLSNN 85
IG L ++ LN++HN + S +P FSNL + +DLS N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 47 IGDLQKIRVLNLSHNCL-SGSIPRSFSNLKMIESLDLSNN 85
IG L ++ LN++HN + S +P FSNL + +DLS N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|2Y8R|A Chain A, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|B Chain B, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|D Chain D, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|E Chain E, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8S|A Chain A, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
pdb|2Y8S|D Chain D, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
Length = 432
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 100 FLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINK 142
F+ FN+++++ SG+ D GQ D T YR L CP K
Sbjct: 23 FMERFNLTHHHQSGIYVDLGQDKEVDGTLYREPAGL-CPIWGK 64
>pdb|2X2Z|A Chain A, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|B Chain B, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|D Chain D, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|E Chain E, Crystal Structure Ama1 From Toxoplasma Gondii
Length = 456
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 100 FLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINK 142
F+ FN+++++ SG+ D GQ D T YR L CP K
Sbjct: 18 FMERFNLTHHHQSGIYVDLGQDKEVDGTLYREPAGL-CPIWGK 59
>pdb|2Y8T|A Chain A, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
pdb|2Y8T|D Chain D, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
Length = 432
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 100 FLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINK 142
F+ FN+++++ SG+ D GQ D T YR L CP K
Sbjct: 23 FMERFNLTHHHQSGIYVDLGQDKEVDGTLYREPAGL-CPIWGK 64
>pdb|2O0O|A Chain A, Crystal Structure Of Tl1a
pdb|2O0O|B Chain B, Crystal Structure Of Tl1a
pdb|2O0O|C Chain C, Crystal Structure Of Tl1a
Length = 180
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 23/136 (16%)
Query: 65 GSIPRSFSNLKMIESLDLSNNRLSGQIPA----QLIELNFLSNFNVSYNNLSGLIPDKGQ 120
G PR+ +L ++ Q PA + L F N ++Y N LIP+ G
Sbjct: 21 GDKPRA--HLTVVRQT--PTQHFKNQFPALHWEHELGLAFTKN-RMNYTNKFLLIPESGD 75
Query: 121 YSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYV 180
Y + + ++RG + C+ I+ GR ++ DS +++
Sbjct: 76 YFIYSQVTFRG--------MTSECSE------IRQAGRPNKPDSITVVITKVTDSYPEPT 121
Query: 181 TVILGLLAILWINSFW 196
+++G ++ + S W
Sbjct: 122 QLLMGTKSVCEVGSNW 137
>pdb|2RE9|A Chain A, Crystal Structure Of Tl1a At 2.1 A
pdb|2RE9|B Chain B, Crystal Structure Of Tl1a At 2.1 A
pdb|2RE9|C Chain C, Crystal Structure Of Tl1a At 2.1 A
Length = 181
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 23/136 (16%)
Query: 65 GSIPRSFSNLKMIESLDLSNNRLSGQIPA----QLIELNFLSNFNVSYNNLSGLIPDKGQ 120
G PR+ +L ++ Q PA + L F N ++Y N LIP+ G
Sbjct: 22 GDKPRA--HLTVVRQT--PTQHFKNQFPALHWEHELGLAFTKN-RMNYTNKFLLIPESGD 76
Query: 121 YSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYV 180
Y + + ++RG + C+ I+ GR ++ DS +++
Sbjct: 77 YFIYSQVTFRG--------MTSECSE------IRQAGRPNKPDSITVVITKVTDSYPEPT 122
Query: 181 TVILGLLAILWINSFW 196
+++G ++ + S W
Sbjct: 123 QLLMGTKSVCEVGSNW 138
>pdb|2QE3|A Chain A, Crystal Structure Of Human Tl1a Extracellular Domain
Length = 184
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 23/136 (16%)
Query: 65 GSIPRSFSNLKMIESLDLSNNRLSGQIPA----QLIELNFLSNFNVSYNNLSGLIPDKGQ 120
G PR+ +L ++ Q PA + L F N ++Y N LIP+ G
Sbjct: 25 GDKPRA--HLTVVRQT--PTQHFKNQFPALHWEHELGLAFTKN-RMNYTNKFLLIPESGD 79
Query: 121 YSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYV 180
Y + + ++RG + C+ I+ GR ++ DS +++
Sbjct: 80 YFIYSQVTFRG--------MTSECSE------IRQAGRPNKPDSITVVITKVTDSYPEPT 125
Query: 181 TVILGLLAILWINSFW 196
+++G ++ + S W
Sbjct: 126 QLLMGTKSVCEVGSNW 141
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 24 SNLNYMVG-LDL----SCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
+NL MVG L++ SCN L+ + + G L+ + L+LSHN L+G + S+LK +
Sbjct: 468 TNLLQMVGSLEILILSSCNLLSIDQQAFHG-LRNVNHLDLSHNSLTGDSMDALSHLKGL- 525
Query: 79 SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL 111
L++++N + P L L+ S N+S+N L
Sbjct: 526 YLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
>pdb|4BB2|A Chain A, Crystal Structure Of Cleaved Corticosteroid-binding
Globulin In Complex With Progesterone
Length = 340
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 90 QIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYST 123
++P QL+++N++ N V + ++PDKG+ +T
Sbjct: 216 ELPCQLVQMNYVGNGTVFF-----ILPDKGKMNT 244
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
+NL+ + L++ NQ++ + + DL K++ LN+ N +S +NL + SL L+
Sbjct: 240 ANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLN 295
Query: 84 NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
NN+L + + L L+ +S N+++ + P
Sbjct: 296 NNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|2VDX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDX|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDY|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
pdb|2VDY|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
Length = 373
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 90 QIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYST 123
++P QL+++N++ N V + ++PDKG+ +T
Sbjct: 215 ELPCQLVQMNYVGNGTVFF-----ILPDKGKMNT 243
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 5 PQQVKVEFVTKNRY-ELYNG--SNLNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSH 60
P +V ++ NR +L G L + LDL NQLT +P+ + D L ++ L+L+
Sbjct: 29 PTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLND 87
Query: 61 NCLSGSIPR-SFSNLKMIESLDLSNN 85
N L SIPR +F NL+ + + L NN
Sbjct: 88 NQLK-SIPRGAFDNLRSLTHIWLLNN 112
>pdb|4APL|A Chain A, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|B Chain B, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|D Chain D, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|E Chain E, Crystal Structure Of Ama1 From Neospora Caninum
Length = 431
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 90 QIPAQLIELN-FLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINK 142
Q P Q EL FL +NV+ ++ SG+ D GQ D YR L CP K
Sbjct: 11 QNPFQTPELKAFLERYNVTLHHQSGVNVDLGQDKEVDGKLYREAAGL-CPVWGK 63
>pdb|3MI8|A Chain A, The Structure Of Tl1a-Dcr3 Complex
Length = 184
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 23/136 (16%)
Query: 65 GSIPRSFSNLKMIESLDLSNNRLSGQIPA----QLIELNFLSNFNVSYNNLSGLIPDKGQ 120
G PR+ +L ++ Q PA + L F N ++Y N LIP+ G
Sbjct: 25 GDKPRA--HLTVVRQT--PTQHFKNQFPALHWEHELGLAFTKN-RMNYTNKFLLIPESGD 79
Query: 121 YSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYV 180
Y + + ++RG + C+ I+ GR ++ DS +++
Sbjct: 80 YFIYSQVTFRG--------MTSECSE------IRQAGRPNKPDSITVVITKVTDSYPEPT 125
Query: 181 TVILGLLAILWINSFW 196
+++G ++ + S W
Sbjct: 126 QLLMGTKSVSEVGSNW 141
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN 61
+ L + LDLS QL P+ L ++VLN+SHN
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
LDLS N++T S++ ++ L L+ N ++ SFS+L +E LDLS N LS
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 92 PAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNL 133
+ L+ L+ N+ N Y T ETS +L
Sbjct: 117 SSWFKPLSSLTFLNLLGN----------PYKTLGETSLFSHL 148
>pdb|2RJK|A Chain A, Crystal Structure Of Human Tl1a Extracellular Domain C95s
Mutant
Length = 184
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 23/136 (16%)
Query: 65 GSIPRSFSNLKMIESLDLSNNRLSGQIPA----QLIELNFLSNFNVSYNNLSGLIPDKGQ 120
G PR+ +L ++ Q PA + L F N ++Y N LIP+ G
Sbjct: 25 GDKPRA--HLTVVRQT--PTQHFKNQFPALHWEHELGLAFTKN-RMNYTNKFLLIPESGD 79
Query: 121 YSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYV 180
Y + + ++RG E I+ GR ++ DS +++
Sbjct: 80 YFIYSQVTFRG--------------MTSESSEIRQAGRPNKPDSITVVITKVTDSYPEPT 125
Query: 181 TVILGLLAILWINSFW 196
+++G ++ + S W
Sbjct: 126 QLLMGTKSVCEVGSNW 141
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLD 81
+NL +V L NQL ++P + D L + LNL+HN L S+P+ F L + LD
Sbjct: 109 TNLKELV---LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELD 163
Query: 82 LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
LS N+L +L L + + N L +PD
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPD 198
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
+NL Y++ L+ NQL ++P+ + D L ++ L L N L F L + L+L
Sbjct: 85 TNLTYLI---LTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 83 SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
++N+L +L L+ ++SYN L L
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced
By Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 31 GLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88
LDLS N++T S++ ++ L L+ N ++ SFS+L +E LDLS N LS
Sbjct: 30 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 51 QKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN-RLSGQIPAQLIELNFLSNFNVSYN 109
+ + +L L N L+G +F+ L ++E LDLS+N +L P L L ++
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 110 NLSGLIP 116
L L P
Sbjct: 115 GLQELGP 121
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 26 LNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLS 83
L + LDL NQLT +P+ + D L ++ L+L+ N L SIPR +F NLK + + L
Sbjct: 61 LTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLL 118
Query: 84 NN 85
NN
Sbjct: 119 NN 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 26 LNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLS 83
L + LDL NQLT +P+ + D L ++ L+L+ N L SIPR +F NLK + + L
Sbjct: 53 LTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLL 110
Query: 84 NN 85
NN
Sbjct: 111 NN 112
>pdb|2RJL|A Chain A, Crystal Structure Of Human Tl1a Extracellular Domain
C95sC135S MUTANT
pdb|3K51|A Chain A, Crystal Structure Of Dcr3-Tl1a Complex
Length = 184
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 23/136 (16%)
Query: 65 GSIPRSFSNLKMIESLDLSNNRLSGQIPA----QLIELNFLSNFNVSYNNLSGLIPDKGQ 120
G PR+ +L ++ Q PA + L F N ++Y N LIP+ G
Sbjct: 25 GDKPRA--HLTVVRQT--PTQHFKNQFPALHWEHELGLAFTKN-RMNYTNKFLLIPESGD 79
Query: 121 YSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYV 180
Y + + ++RG + S+E I+ GR ++ DS +++
Sbjct: 80 YFIYSQVTFRG----------MTSESSE----IRQAGRPNKPDSITVVITKVTDSYPEPT 125
Query: 181 TVILGLLAILWINSFW 196
+++G ++ + S W
Sbjct: 126 QLLMGTKSVSEVGSNW 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,719,160
Number of Sequences: 62578
Number of extensions: 270987
Number of successful extensions: 800
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 280
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)