Query 047563
Match_columns 222
No_of_seqs 203 out of 2846
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 12:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.7 1.7E-17 3.7E-22 149.6 10.3 118 28-145 419-538 (623)
2 PLN00113 leucine-rich repeat r 99.6 2.4E-16 5.2E-21 149.0 7.7 110 27-136 475-585 (968)
3 PLN00113 leucine-rich repeat r 99.6 1.2E-14 2.5E-19 137.6 9.4 116 24-139 496-611 (968)
4 KOG0617 Ras suppressor protein 99.3 1.6E-13 3.5E-18 102.3 -1.1 112 25-138 54-166 (264)
5 KOG4194 Membrane glycoprotein 99.2 1.3E-12 2.7E-17 113.2 -2.1 112 25-136 291-406 (873)
6 PF14580 LRR_9: Leucine-rich r 99.1 5.3E-11 1.2E-15 90.5 4.4 115 15-134 7-125 (175)
7 KOG0617 Ras suppressor protein 99.1 2.6E-12 5.6E-17 95.9 -3.6 115 24-140 76-191 (264)
8 KOG0472 Leucine-rich repeat pr 99.1 1.9E-11 4.2E-16 101.8 -0.0 110 24-135 432-541 (565)
9 PLN03150 hypothetical protein; 99.0 4.7E-10 1E-14 101.6 7.6 93 24-116 439-532 (623)
10 KOG4237 Extracellular matrix p 99.0 8.4E-11 1.8E-15 97.7 2.2 92 24-115 271-362 (498)
11 PF13855 LRR_8: Leucine rich r 99.0 1.7E-10 3.6E-15 72.6 2.9 60 28-87 2-61 (61)
12 KOG4194 Membrane glycoprotein 99.0 9.3E-11 2E-15 101.9 0.1 92 26-117 244-335 (873)
13 PF13855 LRR_8: Leucine rich r 99.0 3E-10 6.5E-15 71.4 2.2 61 51-111 1-61 (61)
14 KOG0472 Leucine-rich repeat pr 98.9 7.5E-11 1.6E-15 98.4 -1.3 106 25-135 204-310 (565)
15 KOG4237 Extracellular matrix p 98.8 3.7E-10 8E-15 94.0 -1.4 123 9-133 50-175 (498)
16 PF14580 LRR_9: Leucine-rich r 98.8 2.4E-09 5.2E-14 81.5 2.9 100 25-128 40-146 (175)
17 KOG0618 Serine/threonine phosp 98.8 6E-10 1.3E-14 101.1 -0.6 107 25-134 381-488 (1081)
18 KOG0444 Cytoskeletal regulator 98.8 9.3E-10 2E-14 96.7 0.2 85 26-112 102-186 (1255)
19 KOG0618 Serine/threonine phosp 98.7 9.4E-10 2E-14 99.8 -2.5 114 20-135 352-465 (1081)
20 KOG0444 Cytoskeletal regulator 98.7 1.7E-09 3.7E-14 95.0 -0.9 111 28-140 269-380 (1255)
21 KOG1259 Nischarin, modulator o 98.5 1.7E-08 3.6E-13 81.9 -0.4 106 27-136 284-413 (490)
22 PLN03210 Resistant to P. syrin 98.5 6.7E-07 1.4E-11 86.6 10.1 107 25-133 609-715 (1153)
23 KOG0532 Leucine-rich repeat (L 98.5 2.4E-08 5.2E-13 86.8 -0.6 105 29-137 145-249 (722)
24 PRK15370 E3 ubiquitin-protein 98.4 1.1E-06 2.5E-11 80.9 9.6 77 27-112 199-275 (754)
25 KOG1859 Leucine-rich repeat pr 98.4 9.4E-09 2E-13 91.6 -3.8 108 26-138 186-295 (1096)
26 PRK15370 E3 ubiquitin-protein 98.4 4.5E-07 9.7E-12 83.5 6.9 81 25-114 218-298 (754)
27 KOG1259 Nischarin, modulator o 98.4 4.9E-08 1.1E-12 79.2 -0.3 65 47-114 280-344 (490)
28 PRK15387 E3 ubiquitin-protein 98.3 7.5E-07 1.6E-11 82.0 5.8 37 100-136 423-459 (788)
29 KOG0532 Leucine-rich repeat (L 98.2 1.4E-07 3E-12 82.2 -1.6 108 24-136 118-225 (722)
30 cd00116 LRR_RI Leucine-rich re 98.2 3.8E-07 8.2E-12 75.7 0.7 110 25-134 79-205 (319)
31 PLN03210 Resistant to P. syrin 98.2 7.4E-06 1.6E-10 79.5 9.3 106 24-133 631-736 (1153)
32 KOG4579 Leucine-rich repeat (L 98.2 2E-07 4.4E-12 67.4 -1.1 88 26-116 52-140 (177)
33 cd00116 LRR_RI Leucine-rich re 98.2 3.3E-07 7.1E-12 76.1 -0.2 108 27-134 108-233 (319)
34 COG4886 Leucine-rich repeat (L 98.1 1.2E-06 2.6E-11 75.2 2.5 104 26-132 115-219 (394)
35 KOG4579 Leucine-rich repeat (L 98.1 2.9E-07 6.3E-12 66.6 -1.5 113 2-117 49-164 (177)
36 KOG4658 Apoptotic ATPase [Sign 98.1 3E-06 6.4E-11 79.4 4.6 108 23-131 541-651 (889)
37 PRK15387 E3 ubiquitin-protein 98.1 3.1E-06 6.7E-11 78.0 4.4 81 28-117 383-463 (788)
38 PF12799 LRR_4: Leucine Rich r 98.0 5.2E-06 1.1E-10 48.3 3.2 36 28-64 2-37 (44)
39 PF12799 LRR_4: Leucine Rich r 98.0 3.4E-06 7.5E-11 49.1 2.2 36 52-88 2-37 (44)
40 COG4886 Leucine-rich repeat (L 98.0 3.1E-06 6.7E-11 72.7 2.2 108 24-135 160-290 (394)
41 KOG4658 Apoptotic ATPase [Sign 97.8 8.6E-06 1.9E-10 76.4 2.1 86 24-110 568-653 (889)
42 KOG1644 U2-associated snRNP A' 97.7 3.5E-05 7.5E-10 59.4 3.8 83 27-112 42-126 (233)
43 KOG3207 Beta-tubulin folding c 97.7 5.9E-06 1.3E-10 70.1 -0.7 113 24-136 143-260 (505)
44 KOG1644 U2-associated snRNP A' 97.7 6.3E-05 1.4E-09 58.0 4.4 102 30-134 22-125 (233)
45 KOG0531 Protein phosphatase 1, 97.6 1.8E-05 3.8E-10 68.6 1.2 105 25-134 93-198 (414)
46 KOG1859 Leucine-rich repeat pr 97.5 2.8E-06 6E-11 76.3 -5.2 103 27-134 164-266 (1096)
47 KOG0531 Protein phosphatase 1, 97.5 3.9E-05 8.5E-10 66.5 1.6 106 25-135 70-175 (414)
48 KOG3207 Beta-tubulin folding c 97.5 3.9E-05 8.5E-10 65.2 0.9 62 26-87 196-258 (505)
49 KOG2739 Leucine-rich acidic nu 96.7 0.0011 2.3E-08 53.0 2.4 83 27-113 43-130 (260)
50 KOG2982 Uncharacterized conser 96.2 0.0015 3.3E-08 53.4 0.7 88 24-111 68-158 (418)
51 KOG2739 Leucine-rich acidic nu 96.2 0.0041 8.8E-08 49.8 2.9 89 43-133 35-127 (260)
52 KOG3665 ZYG-1-like serine/thre 96.0 0.0047 1E-07 56.9 2.9 85 24-110 145-231 (699)
53 KOG3665 ZYG-1-like serine/thre 95.8 0.0048 1E-07 56.9 2.0 80 50-131 147-229 (699)
54 PF00560 LRR_1: Leucine Rich R 95.8 0.0029 6.3E-08 30.8 0.2 19 29-48 2-20 (22)
55 KOG1909 Ran GTPase-activating 95.6 0.0038 8.3E-08 52.0 0.3 109 26-134 184-310 (382)
56 KOG2123 Uncharacterized conser 95.5 0.00086 1.9E-08 54.4 -3.5 95 9-105 23-123 (388)
57 KOG2982 Uncharacterized conser 95.3 0.022 4.8E-07 46.9 3.9 63 24-86 94-157 (418)
58 PRK15386 type III secretion pr 95.2 0.043 9.4E-07 47.4 5.6 55 25-85 50-104 (426)
59 PF00560 LRR_1: Leucine Rich R 95.1 0.0098 2.1E-07 28.9 0.8 17 77-94 2-18 (22)
60 KOG1909 Ran GTPase-activating 95.1 0.01 2.3E-07 49.5 1.4 110 25-134 90-225 (382)
61 PF13306 LRR_5: Leucine rich r 94.8 0.057 1.2E-06 38.3 4.6 83 24-109 9-91 (129)
62 KOG2123 Uncharacterized conser 94.1 0.0037 8E-08 50.8 -3.2 86 26-115 18-104 (388)
63 KOG0473 Leucine-rich repeat pr 93.7 0.0022 4.8E-08 50.8 -5.1 83 27-112 42-124 (326)
64 KOG0473 Leucine-rich repeat pr 93.6 0.0012 2.7E-08 52.2 -6.7 61 26-88 64-124 (326)
65 PF13504 LRR_7: Leucine rich r 93.2 0.055 1.2E-06 24.4 1.1 13 76-88 2-14 (17)
66 COG5238 RNA1 Ran GTPase-activa 92.8 0.04 8.6E-07 44.9 0.6 87 26-112 29-133 (388)
67 smart00369 LRR_TYP Leucine-ric 92.7 0.094 2E-06 26.3 1.8 15 27-41 2-16 (26)
68 smart00370 LRR Leucine-rich re 92.7 0.094 2E-06 26.3 1.8 15 27-41 2-16 (26)
69 PRK15386 type III secretion pr 92.3 0.38 8.3E-06 41.7 5.9 93 27-131 72-186 (426)
70 smart00369 LRR_TYP Leucine-ric 91.8 0.17 3.7E-06 25.3 2.1 14 75-88 2-15 (26)
71 smart00370 LRR Leucine-rich re 91.8 0.17 3.7E-06 25.3 2.1 14 75-88 2-15 (26)
72 PF13306 LRR_5: Leucine rich r 91.7 0.26 5.6E-06 34.8 3.7 81 24-108 32-112 (129)
73 PTZ00382 Variant-specific surf 89.0 0.23 5.1E-06 33.9 1.4 6 189-194 87-92 (96)
74 PF04478 Mid2: Mid2 like cell 88.9 0.14 3E-06 37.7 0.2 16 171-186 50-65 (154)
75 COG5238 RNA1 Ran GTPase-activa 88.7 0.74 1.6E-05 37.8 4.3 109 25-134 90-226 (388)
76 PF08374 Protocadherin: Protoc 86.5 0.66 1.4E-05 36.2 2.7 28 166-193 34-61 (221)
77 PF02009 Rifin_STEVOR: Rifin/s 85.4 0.36 7.9E-06 39.9 0.9 25 180-204 267-291 (299)
78 KOG2120 SCF ubiquitin ligase, 84.7 0.034 7.3E-07 45.9 -5.3 86 28-113 186-274 (419)
79 PF01102 Glycophorin_A: Glycop 84.0 0.29 6.2E-06 34.9 -0.3 13 187-199 82-94 (122)
80 PF13516 LRR_6: Leucine Rich r 84.0 0.2 4.3E-06 24.6 -0.8 14 75-88 2-15 (24)
81 smart00365 LRR_SD22 Leucine-ri 81.3 1.2 2.5E-05 22.6 1.4 14 27-40 2-15 (26)
82 PTZ00370 STEVOR; Provisional 81.3 0.41 8.8E-06 39.0 -0.4 19 183-201 269-287 (296)
83 TIGR01478 STEVOR variant surfa 81.1 0.39 8.5E-06 39.0 -0.5 18 183-200 273-290 (295)
84 smart00364 LRR_BAC Leucine-ric 79.7 1.3 2.7E-05 22.4 1.2 16 76-92 3-18 (26)
85 PF07204 Orthoreo_P10: Orthore 78.4 2 4.2E-05 28.9 2.2 28 170-197 42-69 (98)
86 PF12191 stn_TNFRSF12A: Tumour 78.3 0.75 1.6E-05 32.7 0.2 18 188-205 98-115 (129)
87 PTZ00046 rifin; Provisional 77.4 1 2.2E-05 38.1 0.8 25 179-203 325-349 (358)
88 PF02480 Herpes_gE: Alphaherpe 76.7 0.8 1.7E-05 40.2 0.0 27 176-202 360-386 (439)
89 TIGR01477 RIFIN variant surfac 76.1 1.2 2.5E-05 37.6 0.8 24 180-203 321-344 (353)
90 smart00368 LRR_RI Leucine rich 75.7 2 4.4E-05 21.9 1.4 14 27-40 2-15 (28)
91 KOG2120 SCF ubiquitin ligase, 74.4 0.19 4.1E-06 41.6 -4.1 64 25-88 208-273 (419)
92 PF05454 DAG1: Dystroglycan (D 73.1 1.1 2.4E-05 36.9 0.0 24 170-193 148-171 (290)
93 TIGR00864 PCC polycystin catio 71.5 1.9 4.2E-05 45.4 1.2 32 57-88 1-32 (2740)
94 PF01299 Lamp: Lysosome-associ 70.7 0.81 1.8E-05 38.1 -1.4 7 193-199 295-301 (306)
95 KOG3864 Uncharacterized conser 70.2 0.78 1.7E-05 35.8 -1.4 79 29-107 103-184 (221)
96 PF15050 SCIMP: SCIMP protein 67.2 1.8 3.9E-05 30.4 0.0 11 186-196 23-33 (133)
97 PF04478 Mid2: Mid2 like cell 66.1 1.8 3.8E-05 32.0 -0.2 30 167-197 50-79 (154)
98 KOG3763 mRNA export factor TAP 63.6 4.3 9.4E-05 36.4 1.6 59 74-133 217-281 (585)
99 PF03302 VSP: Giardia variant- 59.9 3.3 7.2E-05 35.9 0.3 14 184-197 383-396 (397)
100 PF05568 ASFV_J13L: African sw 57.7 4.1 9E-05 29.7 0.4 18 183-200 43-60 (189)
101 PF08114 PMP1_2: ATPase proteo 56.3 8.5 0.00018 21.6 1.4 8 189-196 26-33 (43)
102 PF14991 MLANA: Protein melan- 53.6 4.1 8.9E-05 28.4 -0.1 6 188-193 43-48 (118)
103 PF06697 DUF1191: Protein of u 52.6 9.4 0.0002 31.3 1.7 22 188-209 232-253 (278)
104 TIGR00864 PCC polycystin catio 52.1 9.6 0.00021 40.7 2.1 32 33-64 1-32 (2740)
105 PF15345 TMEM51: Transmembrane 50.1 21 0.00046 28.3 3.3 9 186-194 73-81 (233)
106 KOG3763 mRNA export factor TAP 48.4 10 0.00023 34.0 1.5 64 25-89 216-284 (585)
107 PF05545 FixQ: Cbb3-type cytoc 48.2 8.4 0.00018 22.5 0.6 17 186-202 23-39 (49)
108 PF12877 DUF3827: Domain of un 42.4 5.8 0.00013 36.1 -0.9 26 170-195 270-295 (684)
109 PF14610 DUF4448: Protein of u 41.0 12 0.00025 28.8 0.6 20 172-191 159-178 (189)
110 PF12768 Rax2: Cortical protei 39.8 6 0.00013 32.6 -1.2 9 192-200 253-261 (281)
111 PF01102 Glycophorin_A: Glycop 36.0 12 0.00027 26.6 0.1 24 171-194 69-92 (122)
112 KOG1947 Leucine rich repeat pr 34.6 28 0.0006 30.2 2.1 36 74-109 268-305 (482)
113 PF06024 DUF912: Nucleopolyhed 32.2 4.5 9.7E-05 27.8 -2.6 6 193-198 86-91 (101)
114 PHA03099 epidermal growth fact 32.0 15 0.00032 26.4 -0.1 20 180-199 110-129 (139)
115 PF14316 DUF4381: Domain of un 31.7 27 0.00058 25.6 1.3 9 196-204 46-54 (146)
116 PF05454 DAG1: Dystroglycan (D 31.6 16 0.00034 30.3 0.0 36 169-204 144-179 (290)
117 PF05808 Podoplanin: Podoplani 30.5 17 0.00036 27.2 0.0 9 192-200 152-160 (162)
118 PF11980 DUF3481: Domain of un 29.0 24 0.00052 23.3 0.5 19 169-187 15-33 (87)
119 PF02009 Rifin_STEVOR: Rifin/s 28.5 27 0.00059 29.1 0.9 32 175-206 258-289 (299)
120 PRK00523 hypothetical protein; 27.8 26 0.00057 22.4 0.5 13 190-202 23-35 (72)
121 PF00672 HAMP: HAMP domain; I 27.2 19 0.0004 22.1 -0.2 31 184-214 10-40 (70)
122 PF07213 DAP10: DAP10 membrane 27.1 15 0.00033 23.9 -0.7 11 188-198 52-62 (79)
123 PHA03286 envelope glycoprotein 26.9 23 0.00051 31.0 0.3 16 183-198 406-421 (492)
124 PRK01844 hypothetical protein; 26.7 27 0.00059 22.3 0.5 11 193-203 25-35 (72)
125 PF08374 Protocadherin: Protoc 26.4 54 0.0012 25.8 2.1 34 164-197 35-68 (221)
126 PF00558 Vpu: Vpu protein; In 26.2 21 0.00044 23.5 -0.2 10 201-210 40-49 (81)
127 PF12259 DUF3609: Protein of u 25.0 31 0.00067 29.6 0.6 25 178-202 305-329 (361)
128 PF14584 DUF4446: Protein of u 24.1 33 0.00071 25.5 0.6 6 198-203 30-35 (151)
129 PHA03265 envelope glycoprotein 23.9 67 0.0015 27.3 2.4 10 5-14 167-176 (402)
130 PF06667 PspB: Phage shock pro 23.4 31 0.00066 22.4 0.3 6 189-194 23-28 (75)
131 PF15179 Myc_target_1: Myc tar 22.9 29 0.00063 26.5 0.1 25 170-194 24-48 (197)
132 TIGR00847 ccoS cytochrome oxid 22.6 26 0.00056 20.8 -0.2 21 177-197 10-30 (51)
133 PF02430 AMA-1: Apical membran 21.6 31 0.00067 30.3 0.0 11 188-198 447-457 (471)
134 PF15065 NCU-G1: Lysosomal tra 21.4 21 0.00045 30.4 -1.0 24 175-198 325-348 (350)
135 PF02158 Neuregulin: Neureguli 21.4 31 0.00068 29.6 0.0 14 177-190 15-28 (404)
136 smart00367 LRR_CC Leucine-rich 21.0 68 0.0015 15.5 1.2 12 75-86 2-13 (26)
137 TIGR03141 cytochro_ccmD heme e 20.9 73 0.0016 18.2 1.5 9 196-204 29-37 (45)
138 PF15069 FAM163: FAM163 family 20.8 49 0.0011 24.2 0.9 6 189-194 23-28 (143)
139 PF05950 Orthopox_A36R: Orthop 20.4 1.3E+02 0.0028 21.6 2.9 19 181-200 13-31 (158)
140 PF05337 CSF-1: Macrophage col 20.2 34 0.00074 28.0 0.0 18 180-197 236-253 (285)
141 PF03597 CcoS: Cytochrome oxid 20.1 28 0.0006 20.1 -0.4 20 177-196 9-28 (45)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.73 E-value=1.7e-17 Score=149.57 Aligned_cols=118 Identities=32% Similarity=0.529 Sum_probs=106.5
Q ss_pred cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563 28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107 (222)
Q Consensus 28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 107 (222)
.++.|+|++|.+++.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|+++|.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCC--CCCCCcCcccccCccCCCCCCCCCCCC
Q 047563 108 YNNLSGLIPDK--GQYSTFDETSYRGNLYLSCPTINKSCN 145 (222)
Q Consensus 108 ~N~l~~~~p~~--~~l~~l~~l~l~~n~~~c~~~~~~~C~ 145 (222)
+|.++|.+|.. ..+..+..+++.+|+.+|+.+....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999998875 223455678899999999877666664
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.65 E-value=2.4e-16 Score=149.01 Aligned_cols=110 Identities=43% Similarity=0.628 Sum_probs=67.3
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563 107 SYNNLSGLIPDK-GQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c 136 (222)
++|++++.+|.. ..+++|+.+++.+|++.+
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CCCcccccCChhHhcCcccCEEeccCCccee
Confidence 666666555543 445555666666655443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.55 E-value=1.2e-14 Score=137.64 Aligned_cols=116 Identities=39% Similarity=0.647 Sum_probs=106.4
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++++|+.|+|++|.+.+..|..+..+++|+.|++++|.+++.+|..|..+++|+.|++++|++++.+|..+..+++|+.
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCCCCCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPT 139 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~ 139 (222)
+++++|++.+.+|..+.+..+....+.+|+.+|++.
T Consensus 576 l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 576 VNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred EeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999988777788888889999888754
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=1.6e-13 Score=102.28 Aligned_cols=112 Identities=33% Similarity=0.539 Sum_probs=83.1
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCC-cCchhhhcCcccCc
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG-QIPAQLIELNFLSN 103 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~ 103 (222)
++.+|+.|++++|+++ .+|..++.++.|+.|+++.|++. ..|..|+.++.|+.|||..|++.. .+|..|..+..|+.
T Consensus 54 ~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence 4567777777777777 66666777777777777777776 677777777777777777777642 45677777777777
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCCCCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCP 138 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~ 138 (222)
|+++.|.+.-.+|+.+.+++|+.+.++.|.++..|
T Consensus 132 lyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp 166 (264)
T KOG0617|consen 132 LYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP 166 (264)
T ss_pred HHhcCCCcccCChhhhhhcceeEEeeccCchhhCc
Confidence 77777777777778788888888888888776654
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.19 E-value=1.3e-12 Score=113.21 Aligned_cols=112 Identities=27% Similarity=0.301 Sum_probs=74.3
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
+|++|+.|+||+|.|....++.+...++|+.|+|+.|.++...+.+|..|..|+.|+|+.|+++......|.++++|+.|
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 56777777777777777777777667777777777777775556667777777777777777665555556666677777
Q ss_pred ecccccCCCCCCCC----CCCCCcCcccccCccCCC
Q 047563 105 NVSYNNLSGLIPDK----GQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 105 ~l~~N~l~~~~p~~----~~l~~l~~l~l~~n~~~c 136 (222)
||+.|.++..+.+. ..+++|+.|.+.||++..
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence 77777666655543 235566666666666543
No 6
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=5.3e-11 Score=90.50 Aligned_cols=115 Identities=29% Similarity=0.383 Sum_probs=40.1
Q ss_pred CCcEeeeCCCCCCcccEEEeecCCCCCCCChhcc-CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCch
Q 047563 15 KNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIG-DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA 93 (222)
Q Consensus 15 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 93 (222)
+.+.......+...++.|+|++|.|+. +. .+. .+.+|+.|++++|.++ .++ .+..++.|+.|++++|+|+ .++.
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~ 81 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISE 81 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CH
T ss_pred ccccccccccccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-cccc
Confidence 344444544566788999999999994 33 344 5789999999999998 343 4778999999999999999 4544
Q ss_pred hh-hcCcccCceecccccCCCCCCCC--CCCCCcCcccccCccC
Q 047563 94 QL-IELNFLSNFNVSYNNLSGLIPDK--GQYSTFDETSYRGNLY 134 (222)
Q Consensus 94 ~~-~~l~~L~~L~l~~N~l~~~~p~~--~~l~~l~~l~l~~n~~ 134 (222)
.+ ..+++|+.|++++|++.....-. ..+++|+.+++.+||.
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 44 46899999999999998754321 5688899999999995
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.10 E-value=2.6e-12 Score=95.93 Aligned_cols=115 Identities=25% Similarity=0.398 Sum_probs=104.6
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCC-CCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLS-GSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 102 (222)
+.|+.|+.|+++-|.+. ..|..|+.++.|+.|||.+|++. ..+|..|..+..|+.|+|++|.+. .+|..++.+++|+
T Consensus 76 ssl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lq 153 (264)
T KOG0617|consen 76 SSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQ 153 (264)
T ss_pred hhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhccee
Confidence 67899999999999999 89999999999999999999875 568899999999999999999999 7888899999999
Q ss_pred ceecccccCCCCCCCCCCCCCcCcccccCccCCCCCCC
Q 047563 103 NFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTI 140 (222)
Q Consensus 103 ~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~~ 140 (222)
.|.+..|.+-..+.+.+.++.|+.+.+.||.+.-.||.
T Consensus 154 il~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 154 ILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred EEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChh
Confidence 99999999998888888899999999999997766664
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.07 E-value=1.9e-11 Score=101.82 Aligned_cols=110 Identities=30% Similarity=0.484 Sum_probs=91.5
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
+.++.|+.|+|++|.+. .+|..++.+-.|+.++++.|++. .+|.....+..++.+-.++|++....|+.+..|.+|..
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 34567777888888887 77777778878888888888887 77777766777777777778888667777899999999
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~ 135 (222)
||+.+|.+..++|..+.+++++++.+.||||.
T Consensus 510 LDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 510 LDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eccCCCchhhCChhhccccceeEEEecCCccC
Confidence 99999999999998899999999999999976
No 9
>PLN03150 hypothetical protein; Provisional
Probab=99.04 E-value=4.7e-10 Score=101.58 Aligned_cols=93 Identities=37% Similarity=0.568 Sum_probs=83.5
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcC-cccC
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIEL-NFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~ 102 (222)
..+++|+.|+|++|.++|.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|+++|.+|..+... ..+.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999988764 4667
Q ss_pred ceecccccCCCCCC
Q 047563 103 NFNVSYNNLSGLIP 116 (222)
Q Consensus 103 ~L~l~~N~l~~~~p 116 (222)
.+++.+|...+..|
T Consensus 519 ~l~~~~N~~lc~~p 532 (623)
T PLN03150 519 SFNFTDNAGLCGIP 532 (623)
T ss_pred eEEecCCccccCCC
Confidence 88899887655433
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.04 E-value=8.4e-11 Score=97.74 Aligned_cols=92 Identities=23% Similarity=0.250 Sum_probs=81.3
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
+.|++|++|+|++|.+++..+..|.++..++.|.|..|.+.......|.++..|++|+|.+|+|+...|..|..+.+|..
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 56889999999999999888899999999999999999998777778999999999999999999888889999999999
Q ss_pred eecccccCCCCC
Q 047563 104 FNVSYNNLSGLI 115 (222)
Q Consensus 104 L~l~~N~l~~~~ 115 (222)
|++-.|++.+-.
T Consensus 351 l~l~~Np~~CnC 362 (498)
T KOG4237|consen 351 LNLLSNPFNCNC 362 (498)
T ss_pred eehccCcccCcc
Confidence 999999886554
No 11
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=1.7e-10 Score=72.61 Aligned_cols=60 Identities=43% Similarity=0.594 Sum_probs=39.7
Q ss_pred cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcC
Q 047563 28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRL 87 (222)
Q Consensus 28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 87 (222)
+|+.|++++|.++...+..|..+++|+.|++++|.++...|..|.++++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566677777777755556666667777777777766655556666666666666666653
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.97 E-value=9.3e-11 Score=101.86 Aligned_cols=92 Identities=24% Similarity=0.206 Sum_probs=56.4
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 105 (222)
|++|+.|.|..|.+.......|-.+.+++.|+|+.|+++..-.+++.+|.+|+.|+||.|.|+...++.+..+.+|+.|+
T Consensus 244 L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 244 LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD 323 (873)
T ss_pred chhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence 55666666666666655555566666666666666666655555556666666666666666656666666666666666
Q ss_pred cccccCCCCCCC
Q 047563 106 VSYNNLSGLIPD 117 (222)
Q Consensus 106 l~~N~l~~~~p~ 117 (222)
|++|.++...+.
T Consensus 324 Ls~N~i~~l~~~ 335 (873)
T KOG4194|consen 324 LSSNRITRLDEG 335 (873)
T ss_pred ccccccccCChh
Confidence 666666655543
No 13
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=3e-10 Score=71.41 Aligned_cols=61 Identities=43% Similarity=0.561 Sum_probs=54.8
Q ss_pred cCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccccC
Q 047563 51 QKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL 111 (222)
Q Consensus 51 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 111 (222)
++|+.|++++|.++...+..|.++++|+.|++++|+++...|+.|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999966668899999999999999999977788899999999999999875
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.95 E-value=7.5e-11 Score=98.36 Aligned_cols=106 Identities=24% Similarity=0.370 Sum_probs=82.4
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCcc-CCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.|..|.-|+|..|.+. ..| +|.+.+.|+.++++.|.++ .+|.. ...+.++.+|||.+|+++ +.|+.+.-+.+|..
T Consensus 204 ~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~r 279 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLER 279 (565)
T ss_pred chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhh
Confidence 3445555566666665 444 4566666666666666665 44443 347889999999999999 89999999999999
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~ 135 (222)
||+++|.+++.++..+.+ .|+.+.+.|||..
T Consensus 280 LDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 280 LDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 999999999999999888 8999999999973
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.82 E-value=3.7e-10 Score=93.98 Aligned_cols=123 Identities=25% Similarity=0.286 Sum_probs=93.1
Q ss_pred EEEEEECCcEeeeCCCCCC-cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEc-cCCc
Q 047563 9 KVEFVTKNRYELYNGSNLN-YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL-SNNR 86 (222)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L-s~N~ 86 (222)
.+++-.+|..++.. +++ ..+.++|..|.|+.+.|..|+.+++|+.|||++|.|+...|++|.++.+|..|-+ ++|+
T Consensus 50 ~VdCr~~GL~eVP~--~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPA--NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred eEEccCCCcccCcc--cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 34555566665553 354 6667899999999888888999999999999999999888999999998766655 4488
Q ss_pred CCCcCchhhhcCcccCceecccccCCCCCCCC-CCCCCcCcccccCcc
Q 047563 87 LSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNL 133 (222)
Q Consensus 87 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~ 133 (222)
|+....+.|.++.+|+.|.+.-|++.+...+. +.+++++.|++.+|.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh
Confidence 98766677888888888888888887776555 556666666655554
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=2.4e-09 Score=81.48 Aligned_cols=100 Identities=27% Similarity=0.330 Sum_probs=48.3
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccC-CCCCCCCeEEccCCcCCCcC-chhhhcCcccC
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSF-SNLKMIESLDLSNNRLSGQI-PAQLIELNFLS 102 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~ 102 (222)
.+.+|+.|+|++|.|+. ++ .+..++.|+.|++++|.++. ++..+ ..+++|+.|++++|+|.... -..+..+++|+
T Consensus 40 ~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp T-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 36789999999999994 43 47789999999999999994 44333 46899999999999997422 24567889999
Q ss_pred ceecccccCCCCCCCC-----CCCCCcCccc
Q 047563 103 NFNVSYNNLSGLIPDK-----GQYSTFDETS 128 (222)
Q Consensus 103 ~L~l~~N~l~~~~p~~-----~~l~~l~~l~ 128 (222)
.|++.+|+++.. +.. ..+++|+.++
T Consensus 117 ~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 117 VLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred eeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 999999999855 222 3466666665
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.81 E-value=6e-10 Score=101.10 Aligned_cols=107 Identities=30% Similarity=0.423 Sum_probs=68.3
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++++|+.|+|++|++.......+.+++.|+.|+|++|.++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL 457 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE
Confidence 4566666666666666433444556666666666666666 55566666666666666666666 556 56777777778
Q ss_pred ecccccCCCCC-CCCCCCCCcCcccccCccC
Q 047563 105 NVSYNNLSGLI-PDKGQYSTFDETSYRGNLY 134 (222)
Q Consensus 105 ~l~~N~l~~~~-p~~~~l~~l~~l~l~~n~~ 134 (222)
|++.|+++... |....-+.|+.+++.||..
T Consensus 458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 88877776543 2222226788888888874
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.80 E-value=9.3e-10 Score=96.67 Aligned_cols=85 Identities=40% Similarity=0.481 Sum_probs=51.9
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 105 (222)
|..|+.||||+|+++ +.|..+..-+++..|+|++|.|.......|.+|..|-.||||+|++. .+|..+..+..|+.|.
T Consensus 102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK 179 (1255)
T ss_pred cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence 456666666666666 56666666666666666666666322234556666666666666666 4555556666666666
Q ss_pred cccccCC
Q 047563 106 VSYNNLS 112 (222)
Q Consensus 106 l~~N~l~ 112 (222)
+++|++.
T Consensus 180 Ls~NPL~ 186 (1255)
T KOG0444|consen 180 LSNNPLN 186 (1255)
T ss_pred cCCChhh
Confidence 6666554
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.71 E-value=9.4e-10 Score=99.84 Aligned_cols=114 Identities=24% Similarity=0.310 Sum_probs=101.9
Q ss_pred eeCCCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCc
Q 047563 20 LYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELN 99 (222)
Q Consensus 20 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 99 (222)
.|.+..++.|+.|++.+|.++..+-+.+.++++|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..+..++
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~ 430 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLG 430 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhh
Confidence 566778899999999999999988888999999999999999998444455899999999999999999 8899999999
Q ss_pred ccCceecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563 100 FLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 100 ~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~ 135 (222)
.|+.|...+|++...+ +..+++.|+.++++.|.+.
T Consensus 431 ~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence 9999999999999876 7788999999999888753
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.71 E-value=1.7e-09 Score=95.03 Aligned_cols=111 Identities=27% Similarity=0.333 Sum_probs=93.5
Q ss_pred cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCC-CCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLS-GSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
+|++|+||.|+++ .+|..++.++.|+.|++.+|.+. .-+|..++.|.+|+.+..++|.+. ..|..+..|..|+.|.+
T Consensus 269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence 5666777777777 77888888888888888888875 346888888889999999999988 88999999999999999
Q ss_pred ccccCCCCCCCCCCCCCcCcccccCccCCCCCCC
Q 047563 107 SYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTI 140 (222)
Q Consensus 107 ~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~~ 140 (222)
+.|.+-..+..+..++.+..|+++.|+.+-.||.
T Consensus 347 ~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 347 DHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 9999998877767788999999999998877664
No 21
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=1.7e-08 Score=81.86 Aligned_cols=106 Identities=27% Similarity=0.368 Sum_probs=67.4
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCc--------------
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIP-------------- 92 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-------------- 92 (222)
..|+.+|||+|.|+ .+..+..-+|.++.|++++|.+. .+ +.+..+++|+.|||++|.++ .+-
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 36677777777777 55555556667777777777765 22 22556667777777777654 222
Q ss_pred --------hhhhcCcccCceecccccCCCCCC--CCCCCCCcCcccccCccCCC
Q 047563 93 --------AQLIELNFLSNFNVSYNNLSGLIP--DKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 93 --------~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~~~c 136 (222)
+.+..+-+|..||+++|++..... .++.+++|.++.+.+||..-
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 223334466777777777765432 33778888888888888543
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.50 E-value=6.7e-07 Score=86.59 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=79.9
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
.+.+|+.|++++|.+. .++..+..+++|+.++++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|
T Consensus 609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 3568888888888887 5677778888999999987764446664 6778889999998877656788888888889999
Q ss_pred ecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563 105 NVSYNNLSGLIPDKGQYSTFDETSYRGNL 133 (222)
Q Consensus 105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~ 133 (222)
++++|...+..|....+++|+.+++.++.
T Consensus 687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 687 DMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred eCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 98886543344443456677777776654
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=2.4e-08 Score=86.81 Aligned_cols=105 Identities=29% Similarity=0.379 Sum_probs=66.2
Q ss_pred ccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceeccc
Q 047563 29 MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY 108 (222)
Q Consensus 29 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 108 (222)
|+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|++..|++. .+|..+..+ .|..||++.
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence 344444444444 44444444445555555555554 45555555555566666666665 455555644 367788888
Q ss_pred ccCCCCCCCCCCCCCcCcccccCccCCCC
Q 047563 109 NNLSGLIPDKGQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 109 N~l~~~~p~~~~l~~l~~l~l~~n~~~c~ 137 (222)
|+++.++-....++.|+.+.+++||+...
T Consensus 221 Nkis~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 221 NKISYLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred CceeecchhhhhhhhheeeeeccCCCCCC
Confidence 98888877778888899999999997553
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.44 E-value=1.1e-06 Score=80.91 Aligned_cols=77 Identities=29% Similarity=0.502 Sum_probs=36.6
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
+.++.|+|++|.++ .+|..+. ++|+.|++++|.++ .+|..+. .+|+.|++++|++. .+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 45666666666666 3443332 35566666666555 3343322 23444444444444 3333322 23444444
Q ss_pred ccccCC
Q 047563 107 SYNNLS 112 (222)
Q Consensus 107 ~~N~l~ 112 (222)
++|+++
T Consensus 270 s~N~L~ 275 (754)
T PRK15370 270 FHNKIS 275 (754)
T ss_pred cCCccC
Confidence 444444
No 25
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=9.4e-09 Score=91.60 Aligned_cols=108 Identities=30% Similarity=0.344 Sum_probs=84.2
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 105 (222)
+++++.|+|++|+++. .. .+..++.|+.|||++|.+. .+|.--..-..|+.|.+++|.++. + ..+.++.+|..||
T Consensus 186 l~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t-L-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT-L-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh-h-hhHHhhhhhhccc
Confidence 5688899999999984 33 6888999999999999998 566432222349999999999873 2 4578899999999
Q ss_pred cccccCCCCCCC--CCCCCCcCcccccCccCCCCC
Q 047563 106 VSYNNLSGLIPD--KGQYSTFDETSYRGNLYLSCP 138 (222)
Q Consensus 106 l~~N~l~~~~p~--~~~l~~l~~l~l~~n~~~c~~ 138 (222)
++.|-+.+--.- .+.+..|+.|.++|||..|.+
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 999988764322 256778899999999977743
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.43 E-value=4.5e-07 Score=83.52 Aligned_cols=81 Identities=28% Similarity=0.426 Sum_probs=45.1
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
..++|+.|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|
T Consensus 218 l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L 288 (754)
T PRK15370 218 LQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYL 288 (754)
T ss_pred hccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEE
Confidence 3456777777777777 4454432 35666666666665 4454432 35566666666665 3444332 345555
Q ss_pred ecccccCCCC
Q 047563 105 NVSYNNLSGL 114 (222)
Q Consensus 105 ~l~~N~l~~~ 114 (222)
++++|++++.
T Consensus 289 ~Ls~N~Lt~L 298 (754)
T PRK15370 289 SVYDNSIRTL 298 (754)
T ss_pred ECCCCccccC
Confidence 5555555543
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=4.9e-08 Score=79.21 Aligned_cols=65 Identities=29% Similarity=0.319 Sum_probs=55.1
Q ss_pred ccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccccCCCC
Q 047563 47 IGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114 (222)
Q Consensus 47 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
......|+.+||++|.++ .+..+..-++.++.|+++.|++. .+ +.+..+++|..||+++|.++..
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~ 344 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAEC 344 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhh
Confidence 344567899999999998 77778888899999999999998 44 3488999999999999988754
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.33 E-value=7.5e-07 Score=82.01 Aligned_cols=37 Identities=22% Similarity=0.114 Sum_probs=21.9
Q ss_pred ccCceecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563 100 FLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 100 ~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c 136 (222)
+|+.|++++|+++.++.....++.+..+++.+|++..
T Consensus 423 ~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 423 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 3455555566655443333556677777777777543
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.21 E-value=1.4e-07 Score=82.16 Aligned_cols=108 Identities=32% Similarity=0.443 Sum_probs=76.5
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++..|+.|||+.|+++ .+|..++.++ |+.|-+++|+++ .+|..++.+.+|..|+.+.|.+. .+|..+..+.+|+.
T Consensus 118 ~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~ 193 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH
Confidence 35667777777777777 6666666654 677777777776 67777777777777777777777 66777777777777
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c 136 (222)
|.+..|++...+++...+ .|..++++.|+..-
T Consensus 194 l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~ 225 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELCSL-PLIRLDFSCNKISY 225 (722)
T ss_pred HHHhhhhhhhCCHHHhCC-ceeeeecccCceee
Confidence 777777777776665433 45666776666543
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.20 E-value=3.8e-07 Score=75.67 Aligned_cols=110 Identities=22% Similarity=0.238 Sum_probs=65.1
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcC---CCeEEccCCcCCC----CcCccCCCC-CCCCeEEccCCcCCCc----Cc
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQK---IRVLNLSHNCLSG----SIPRSFSNL-KMIESLDLSNNRLSGQ----IP 92 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~----~p 92 (222)
.+++|+.|++++|.+....+..+..+.+ |+.|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 3567777777777777555555555554 7777777777652 222334455 6777777777777632 22
Q ss_pred hhhhcCcccCceecccccCCCCCC-----CCCCCCCcCcccccCccC
Q 047563 93 AQLIELNFLSNFNVSYNNLSGLIP-----DKGQYSTFDETSYRGNLY 134 (222)
Q Consensus 93 ~~~~~l~~L~~L~l~~N~l~~~~p-----~~~~l~~l~~l~l~~n~~ 134 (222)
..+..+..|+.|++++|.+++... ....+++|+.+++.+|.+
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 334455567777777777663211 012234666666666653
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.19 E-value=7.4e-06 Score=79.48 Aligned_cols=106 Identities=20% Similarity=0.237 Sum_probs=78.1
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|+|+++...+.+|. +..+++|+.|++++|..-..+|..+..+++|+.|++++|.-...+|..+ .+++|+.
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence 4688999999998765446665 7788999999999887666888889999999999999875444667654 6788888
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNL 133 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~ 133 (222)
|++++|...+..|.. ..+++.+++.+|.
T Consensus 709 L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~ 736 (1153)
T PLN03210 709 LNLSGCSRLKSFPDI--STNISWLDLDETA 736 (1153)
T ss_pred EeCCCCCCccccccc--cCCcCeeecCCCc
Confidence 888887654444432 3455566666555
No 32
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=2e-07 Score=67.39 Aligned_cols=88 Identities=22% Similarity=0.288 Sum_probs=57.5
Q ss_pred CCcccEEEeecCCCCCCCChhcc-CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIG-DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
...|+..+|++|.+. ..|+.|. .++.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|+.+..+.+|-.|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 345666677777776 4444444 3446677777777776 66666777777777777777776 566666667777777
Q ss_pred ecccccCCCCCC
Q 047563 105 NVSYNNLSGLIP 116 (222)
Q Consensus 105 ~l~~N~l~~~~p 116 (222)
+..+|.+..++-
T Consensus 129 ds~~na~~eid~ 140 (177)
T KOG4579|consen 129 DSPENARAEIDV 140 (177)
T ss_pred cCCCCccccCcH
Confidence 777766665543
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.17 E-value=3.3e-07 Score=76.06 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=63.8
Q ss_pred CcccEEEeecCCCCC----CCChhccCC-cCCCeEEccCCcCCCC----cCccCCCCCCCCeEEccCCcCCCc----Cch
Q 047563 27 NYMVGLDLSCNQLTG----NVPSEIGDL-QKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDLSNNRLSGQ----IPA 93 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~ 93 (222)
++|+.|++++|.++. .+...+..+ ++|+.|++++|.+++. .+..+..+.+|+.|++++|.+++. ++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 347777777777763 122334455 6777777777777632 223455566777777777777632 222
Q ss_pred hhhcCcccCceecccccCCCCCCC-----CCCCCCcCcccccCccC
Q 047563 94 QLIELNFLSNFNVSYNNLSGLIPD-----KGQYSTFDETSYRGNLY 134 (222)
Q Consensus 94 ~~~~l~~L~~L~l~~N~l~~~~p~-----~~~l~~l~~l~l~~n~~ 134 (222)
.+...++|+.|++++|.+++.... ...+++|+.+++.+|+.
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 334455777777777776533211 13456677777776653
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.14 E-value=1.2e-06 Score=75.17 Aligned_cols=104 Identities=37% Similarity=0.563 Sum_probs=59.7
Q ss_pred CCcccEEEeecCCCCCCCChhccCCc-CCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQ-KIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|+++.|++. .+|......+.|..|
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 345666666666666 4444444443 6666666666666 45455556666666666666666 445444455666666
Q ss_pred ecccccCCCCCCCCCCCCCcCcccccCc
Q 047563 105 NVSYNNLSGLIPDKGQYSTFDETSYRGN 132 (222)
Q Consensus 105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n 132 (222)
++++|+++.+++.......+..+.+.+|
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCC
Confidence 6666666655543223333445555555
No 35
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=2.9e-07 Score=66.60 Aligned_cols=113 Identities=20% Similarity=0.314 Sum_probs=87.1
Q ss_pred CccCcccEEEEEECCcEeeeCC---CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCC
Q 047563 2 LTYPQQVKVEFVTKNRYELYNG---SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 78 (222)
|..-.|.+.+.++++.++.|+. ..++.++.|+|++|.|+ ..|.++..++.|+.++++.|.+. ..|..+..|.+|.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 3345677788888998888754 34568899999999999 88999999999999999999998 7777776799999
Q ss_pred eEEccCCcCCCcCchhhhcCcccCceecccccCCCCCCC
Q 047563 79 SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117 (222)
Q Consensus 79 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 117 (222)
.|+..+|.+. .+|-.+..-+..-...+.++++.+..+.
T Consensus 127 ~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 127 MLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred HhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 9999999988 5655433333334445666777665544
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.10 E-value=3e-06 Score=79.44 Aligned_cols=108 Identities=25% Similarity=0.245 Sum_probs=73.6
Q ss_pred CCCCCcccEEEeecCC--CCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcc
Q 047563 23 GSNLNYMVGLDLSCNQ--LTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNF 100 (222)
Q Consensus 23 ~~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 100 (222)
..+.+.|++|-+..|. +....+..|..++.|..|||++|.--+.+|..++.|.+|++|++++..+. .+|..+..+..
T Consensus 541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK 619 (889)
T ss_pred CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence 3445567777777775 44333444667788888888877665677887888888888888888877 77777788878
Q ss_pred cCceecccccCCCCCCCC-CCCCCcCcccccC
Q 047563 101 LSNFNVSYNNLSGLIPDK-GQYSTFDETSYRG 131 (222)
Q Consensus 101 L~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~ 131 (222)
|.+|++..+.-...+|.. ..+++|+.+.+..
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeec
Confidence 888887776544444444 3366666666443
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.10 E-value=3.1e-06 Score=78.04 Aligned_cols=81 Identities=30% Similarity=0.327 Sum_probs=54.3
Q ss_pred cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563 28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107 (222)
Q Consensus 28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 107 (222)
.|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+..+++|..++++
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 34445555555442 3321 235566666666665 34432 235777888888888 788889999999999999
Q ss_pred cccCCCCCCC
Q 047563 108 YNNLSGLIPD 117 (222)
Q Consensus 108 ~N~l~~~~p~ 117 (222)
+|++++..+.
T Consensus 454 ~N~Ls~~~~~ 463 (788)
T PRK15387 454 GNPLSERTLQ 463 (788)
T ss_pred CCCCCchHHH
Confidence 9999987554
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=5.2e-06 Score=48.35 Aligned_cols=36 Identities=44% Similarity=0.679 Sum_probs=17.0
Q ss_pred cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCC
Q 047563 28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLS 64 (222)
Q Consensus 28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~ 64 (222)
+|+.|++++|.|+ .+|+.+.++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555555 33444455555555555555444
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=3.4e-06 Score=49.10 Aligned_cols=36 Identities=42% Similarity=0.674 Sum_probs=20.0
Q ss_pred CCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCC
Q 047563 52 KIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88 (222)
Q Consensus 52 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 88 (222)
+|+.|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666665 44444556666666666666555
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.99 E-value=3.1e-06 Score=72.69 Aligned_cols=108 Identities=33% Similarity=0.540 Sum_probs=59.2
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCcc-----------------------CCCCCCCCeE
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRS-----------------------FSNLKMIESL 80 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-----------------------~~~l~~L~~L 80 (222)
.+++.|+.|+++.|.++ ..|.....+++|+.|++++|.++ .+|.. +..+..+..+
T Consensus 160 ~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 160 RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGL 237 (394)
T ss_pred hccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhccccccc
Confidence 45566666666666666 44443335555666666666655 34433 3333444444
Q ss_pred EccCCcCCCcCchhhhcCcccCceecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563 81 DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 81 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~ 135 (222)
.+.+|++. ..+..+..+++++.|++++|.++.... .+.+.+++.+++.+|...
T Consensus 238 ~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 238 ELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccCCceee-eccchhccccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 44444444 224455556666666666666665544 455566666666666544
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.82 E-value=8.6e-06 Score=76.39 Aligned_cols=86 Identities=33% Similarity=0.457 Sum_probs=76.9
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..|+.|++|||++|.=-+.+|..++.|-+|++|++++..++ .+|..+.+|..|.+|++..+.-...+|.....+.+|++
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 35899999999998877899999999999999999999999 99999999999999999988865566777788999999
Q ss_pred eeccccc
Q 047563 104 FNVSYNN 110 (222)
Q Consensus 104 L~l~~N~ 110 (222)
|.+..-.
T Consensus 647 L~l~~s~ 653 (889)
T KOG4658|consen 647 LRLPRSA 653 (889)
T ss_pred EEeeccc
Confidence 9887654
No 42
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=3.5e-05 Score=59.36 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=46.0
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCc--hhhhcCcccCce
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIP--AQLIELNFLSNF 104 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L 104 (222)
.+...+||++|.+- ..+ .|..++.|.+|.+++|+|+...|.--..+++|+.|.|.+|+|. .+- +.+..+++|+.|
T Consensus 42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 34555666666655 222 2555666666666666666555544445556666666666654 221 123345566666
Q ss_pred ecccccCC
Q 047563 105 NVSYNNLS 112 (222)
Q Consensus 105 ~l~~N~l~ 112 (222)
.+-+|+.+
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 66666654
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=5.9e-06 Score=70.13 Aligned_cols=113 Identities=23% Similarity=0.160 Sum_probs=71.1
Q ss_pred CCCCcccEEEeecCCCCCCC--ChhccCCcCCCeEEccCCcCCCCcCcc-CCCCCCCCeEEccCCcCCCcC-chhhhcCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNV--PSEIGDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDLSNNRLSGQI-PAQLIELN 99 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~ 99 (222)
..+++++.||||.|-+..-. -....++++|+.|+++.|.+....... -..+++|+.|.|+.+.++... ......++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 46778888888888777422 244567888888888888876322222 235677888888888776432 22344567
Q ss_pred ccCceecccccCCCCC-CCCCCCCCcCcccccCccCCC
Q 047563 100 FLSNFNVSYNNLSGLI-PDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 100 ~L~~L~l~~N~l~~~~-p~~~~l~~l~~l~l~~n~~~c 136 (222)
+|..|++..|...... .....++.|..|++++|++.-
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence 7777777777422211 112456667777777776544
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=6.3e-05 Score=57.97 Aligned_cols=102 Identities=20% Similarity=0.177 Sum_probs=75.3
Q ss_pred cEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccc
Q 047563 30 VGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN 109 (222)
Q Consensus 30 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 109 (222)
+.++|++..+... ..-=..+.+...+||++|.+. --+.|+.++.|.+|.+++|+|+..-|..-.-+++|..|.+.+|
T Consensus 22 ~e~~LR~lkip~i-enlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVI-ENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccch-hhccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 4566777666522 111113456778999999986 3345788999999999999999777766666788999999999
Q ss_pred cCCCCCC--CCCCCCCcCcccccCccC
Q 047563 110 NLSGLIP--DKGQYSTFDETSYRGNLY 134 (222)
Q Consensus 110 ~l~~~~p--~~~~l~~l~~l~l~~n~~ 134 (222)
.+..... ....++.|+.+.+-+|+.
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCch
Confidence 9876532 236678899999999984
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.63 E-value=1.8e-05 Score=68.63 Aligned_cols=105 Identities=28% Similarity=0.410 Sum_probs=54.4
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
.+++|..|++..|.|.+ +...+..+++|+.|++++|.|+...+ +..+..|+.|++++|.|+. + ..+..+..|+.+
T Consensus 93 ~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l 167 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD-I-SGLESLKSLKLL 167 (414)
T ss_pred cccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchh-c-cCCccchhhhcc
Confidence 34566666666666663 22224456666666666666653332 2234446666666666652 2 223345566666
Q ss_pred ecccccCCCCCCC-CCCCCCcCcccccCccC
Q 047563 105 NVSYNNLSGLIPD-KGQYSTFDETSYRGNLY 134 (222)
Q Consensus 105 ~l~~N~l~~~~p~-~~~l~~l~~l~l~~n~~ 134 (222)
++++|.+....+. ...+..+..+.+.+|..
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 6666666554442 12344444444444443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.54 E-value=2.8e-06 Score=76.33 Aligned_cols=103 Identities=25% Similarity=0.261 Sum_probs=83.2
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
..|...+.++|.+. ....++.-++.++.|+|++|.++... .+..++.|++|||+.|.+. .+|..-..-..|..|.+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 35667788999998 78888888999999999999998332 7888999999999999998 66653222235999999
Q ss_pred ccccCCCCCCCCCCCCCcCcccccCccC
Q 047563 107 SYNNLSGLIPDKGQYSTFDETSYRGNLY 134 (222)
Q Consensus 107 ~~N~l~~~~p~~~~l~~l~~l~l~~n~~ 134 (222)
++|.++..- .+.++.+|+.|++..|.+
T Consensus 240 rnN~l~tL~-gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 240 RNNALTTLR-GIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred cccHHHhhh-hHHhhhhhhccchhHhhh
Confidence 999988653 346788999999988875
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.51 E-value=3.9e-05 Score=66.50 Aligned_cols=106 Identities=23% Similarity=0.293 Sum_probs=83.5
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
.+..+..+.++.|.+.. .-..+..+.++..|++..|.+. .+...+..+++|++|++++|.|+... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 46677778899999884 4445778899999999999998 44444778899999999999998443 35677889999
Q ss_pred ecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563 105 NVSYNNLSGLIPDKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~ 135 (222)
++++|.++... ....+..+..+++.+|...
T Consensus 146 ~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 146 NLSGNLISDIS-GLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eeccCcchhcc-CCccchhhhcccCCcchhh
Confidence 99999998763 3344778888888888744
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=3.9e-05 Score=65.23 Aligned_cols=62 Identities=27% Similarity=0.214 Sum_probs=25.5
Q ss_pred CCcccEEEeecCCCCCCC-ChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcC
Q 047563 26 LNYMVGLDLSCNQLTGNV-PSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRL 87 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 87 (222)
+++|+.|.|+.+.++-.. ......+|++..|+|..|............+..|+.|+|++|++
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 345555555555554211 11222344444444444432222222233334444444444444
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.0011 Score=53.03 Aligned_cols=83 Identities=23% Similarity=0.279 Sum_probs=55.2
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCC--cCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhh---cCccc
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN--CLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLI---ELNFL 101 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L 101 (222)
..|+.|.+.+-.++. . ..|..|++|+.|.++.| .+.+..+.....+++|+++++++|++.. ++.+. .+.+|
T Consensus 43 ~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence 355555555555542 2 23556788899999988 5555555555566889999999998862 33333 45567
Q ss_pred CceecccccCCC
Q 047563 102 SNFNVSYNNLSG 113 (222)
Q Consensus 102 ~~L~l~~N~l~~ 113 (222)
..|++.+|..+.
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 788888887665
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.0015 Score=53.44 Aligned_cols=88 Identities=28% Similarity=0.314 Sum_probs=57.0
Q ss_pred CCCCcccEEEeecCCCCC--CCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCch-hhhcCcc
Q 047563 24 SNLNYMVGLDLSCNQLTG--NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA-QLIELNF 100 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~ 100 (222)
+..+.++.+||.+|.|+. .+...+.+||.|+.|+++.|.+...+..--..+.+|+.|-|.+..+...... .+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345677788888888872 2344566888888888888888744332223556788888877776543322 2345666
Q ss_pred cCceecccccC
Q 047563 101 LSNFNVSYNNL 111 (222)
Q Consensus 101 L~~L~l~~N~l 111 (222)
++.|.++.|.+
T Consensus 148 vtelHmS~N~~ 158 (418)
T KOG2982|consen 148 VTELHMSDNSL 158 (418)
T ss_pred hhhhhhccchh
Confidence 66777776643
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.0041 Score=49.79 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=59.6
Q ss_pred CChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCC--cCCCcCchhhhcCcccCceecccccCCCC--CCCC
Q 047563 43 VPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN--RLSGQIPAQLIELNFLSNFNVSYNNLSGL--IPDK 118 (222)
Q Consensus 43 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~ 118 (222)
+....-.+..|+.+.+.+..++ .-..|..|++|+.|.++.| ++.+.++-....+++|+++++++|++.-+ ++..
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 3333444556666666665554 2235778899999999999 77766666667779999999999998731 2222
Q ss_pred CCCCCcCcccccCcc
Q 047563 119 GQYSTFDETSYRGNL 133 (222)
Q Consensus 119 ~~l~~l~~l~l~~n~ 133 (222)
..+.+|..+++..+.
T Consensus 113 ~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 113 KELENLKSLDLFNCS 127 (260)
T ss_pred hhhcchhhhhcccCC
Confidence 445566666655443
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.03 E-value=0.0047 Score=56.92 Aligned_cols=85 Identities=21% Similarity=0.282 Sum_probs=43.7
Q ss_pred CCCCcccEEEeecCCCCCC-CChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCC-cCchhhhcCccc
Q 047563 24 SNLNYMVGLDLSCNQLTGN-VPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG-QIPAQLIELNFL 101 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L 101 (222)
.-|+.|+.|.+++-.+... .-....++++|..||+++.+++.. ..++.|++|+.|.+.+=.+.. ..-..+..+++|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 3456666666666544322 123344566666666666666522 345556666665555443331 111234455666
Q ss_pred Cceeccccc
Q 047563 102 SNFNVSYNN 110 (222)
Q Consensus 102 ~~L~l~~N~ 110 (222)
+.||+|...
T Consensus 223 ~vLDIS~~~ 231 (699)
T KOG3665|consen 223 RVLDISRDK 231 (699)
T ss_pred Ceeeccccc
Confidence 666666543
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.83 E-value=0.0048 Score=56.90 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=34.1
Q ss_pred CcCCCeEEccCCcCCC-CcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccccCCCCC--CCCCCCCCcCc
Q 047563 50 LQKIRVLNLSHNCLSG-SIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLI--PDKGQYSTFDE 126 (222)
Q Consensus 50 l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~--p~~~~l~~l~~ 126 (222)
+|+|+.|.+++-.+.. .......++++|..||+|+.+++.. ..+..+++|+.|.+.+=.+..-. .+...++.|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4555555554443321 1122234445555555555555421 33444555555544443333211 11134455555
Q ss_pred ccccC
Q 047563 127 TSYRG 131 (222)
Q Consensus 127 l~l~~ 131 (222)
|+++.
T Consensus 225 LDIS~ 229 (699)
T KOG3665|consen 225 LDISR 229 (699)
T ss_pred eeccc
Confidence 55443
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.76 E-value=0.0029 Score=30.80 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=9.7
Q ss_pred ccEEEeecCCCCCCCChhcc
Q 047563 29 MVGLDLSCNQLTGNVPSEIG 48 (222)
Q Consensus 29 L~~L~Ls~N~l~~~~p~~~~ 48 (222)
|++|||++|.++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444343
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.56 E-value=0.0038 Score=51.98 Aligned_cols=109 Identities=14% Similarity=0.213 Sum_probs=73.5
Q ss_pred CCcccEEEeecCCCCCC----CChhccCCcCCCeEEccCCcCCCC----cCccCCCCCCCCeEEccCCcCCCcCchhhh-
Q 047563 26 LNYMVGLDLSCNQLTGN----VPSEIGDLQKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDLSNNRLSGQIPAQLI- 96 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~- 96 (222)
.+.|+.+.++.|.|... ....|...++|+.|||..|.++.. +...++.+++|+.|+++++.+...-...+.
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 46778888888877632 234567788888888888888632 234466777888888888887654333322
Q ss_pred ----cCcccCceecccccCCCCCC-----CCCCCCCcCcccccCccC
Q 047563 97 ----ELNFLSNFNVSYNNLSGLIP-----DKGQYSTFDETSYRGNLY 134 (222)
Q Consensus 97 ----~l~~L~~L~l~~N~l~~~~p-----~~~~l~~l~~l~l~~n~~ 134 (222)
..++|..+.+.+|.++..-. .....+.|..|.+.+|.+
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 35688888888888764211 113467788888888876
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.00086 Score=54.40 Aligned_cols=95 Identities=20% Similarity=0.262 Sum_probs=65.9
Q ss_pred EEEEEECCcEeeeCCCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcC-ccCCCCCCCCeEEccCCcC
Q 047563 9 KVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP-RSFSNLKMIESLDLSNNRL 87 (222)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l 87 (222)
++.++-.|...+=--..|+.|++|.||-|.|+..-| +..++.|+.|+|..|.|...-. ..+.++++|+.|.|..|.-
T Consensus 23 KLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 23 KLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred hhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 344444444332222458899999999999985443 5678899999999999873322 3478899999999999987
Q ss_pred CCcCch-----hhhcCcccCcee
Q 047563 88 SGQIPA-----QLIELNFLSNFN 105 (222)
Q Consensus 88 ~~~~p~-----~~~~l~~L~~L~ 105 (222)
.|.-+. .+.-+++|+.||
T Consensus 101 c~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 101 CGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccccchhHHHHHHHHcccchhcc
Confidence 765543 344577777775
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.022 Score=46.89 Aligned_cols=63 Identities=32% Similarity=0.445 Sum_probs=48.6
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCcc-CCCCCCCCeEEccCCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDLSNNR 86 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~ 86 (222)
.+|+.|+.|+|++|.+...+...-.++.+|+.|-|.+..+.+....+ ...++.++.|+++.|.
T Consensus 94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 47999999999999999655443246789999999888887555443 5678888888888883
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.24 E-value=0.043 Score=47.37 Aligned_cols=55 Identities=11% Similarity=0.177 Sum_probs=32.7
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCC
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN 85 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 85 (222)
.+++++.|+++++.++ .+|. + .++|+.|.++++.--..+|..+. .+|+.|.+++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 3567778888888777 4452 1 23577777766332225554432 46667777666
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.09 E-value=0.0098 Score=28.86 Aligned_cols=17 Identities=53% Similarity=0.833 Sum_probs=8.2
Q ss_pred CCeEEccCCcCCCcCchh
Q 047563 77 IESLDLSNNRLSGQIPAQ 94 (222)
Q Consensus 77 L~~L~Ls~N~l~~~~p~~ 94 (222)
|++|++++|+++ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 445555555555 44443
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.07 E-value=0.01 Score=49.46 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=68.3
Q ss_pred CCCcccEEEeecCCCCCCCChh----ccCCcCCCeEEccCCcCCCCc-------------CccCCCCCCCCeEEccCCcC
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSE----IGDLQKIRVLNLSHNCLSGSI-------------PRSFSNLKMIESLDLSNNRL 87 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~-------------p~~~~~l~~L~~L~Ls~N~l 87 (222)
..+.|++||||.|.+...-+.. +.....|+.|.|.+|.+.-.- ....+.-+.|+.+...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3458889999999888544443 345677888888888775111 11133456778888888877
Q ss_pred CCcC----chhhhcCcccCceecccccCCCCCCCC-----CCCCCcCcccccCccC
Q 047563 88 SGQI----PAQLIELNFLSNFNVSYNNLSGLIPDK-----GQYSTFDETSYRGNLY 134 (222)
Q Consensus 88 ~~~~----p~~~~~l~~L~~L~l~~N~l~~~~p~~-----~~l~~l~~l~l~~n~~ 134 (222)
.... ...|...+.|..+.+..|.+....... .+.+.|+.|++++|.+
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence 5322 223445567777777777664322211 4566777777777765
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.84 E-value=0.057 Score=38.31 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=48.0
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.+.++|+.+.+.. .+.......|...++++.+.+..+ +.......|..+.+++.+.+.+ .+.......|..+++++.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 3456777887764 566566677888878888888775 5545556688887888888866 443244456667788888
Q ss_pred eecccc
Q 047563 104 FNVSYN 109 (222)
Q Consensus 104 L~l~~N 109 (222)
+.+..+
T Consensus 86 i~~~~~ 91 (129)
T PF13306_consen 86 IDIPSN 91 (129)
T ss_dssp EEETTT
T ss_pred cccCcc
Confidence 887654
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.15 E-value=0.0037 Score=50.82 Aligned_cols=86 Identities=22% Similarity=0.159 Sum_probs=55.3
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcC-chhhhcCcccCce
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI-PAQLIELNFLSNF 104 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L 104 (222)
+.+.+.|+.=+..++.+ .....|+.|+.|.|+-|.++..-| +..++.|+.|+|..|.|...- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44556666666665521 234567788888888888874444 446677888888888776321 1245577788888
Q ss_pred ecccccCCCCC
Q 047563 105 NVSYNNLSGLI 115 (222)
Q Consensus 105 ~l~~N~l~~~~ 115 (222)
-|..|+=.+.-
T Consensus 94 WL~ENPCc~~a 104 (388)
T KOG2123|consen 94 WLDENPCCGEA 104 (388)
T ss_pred hhccCCccccc
Confidence 88877765543
No 63
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.66 E-value=0.0022 Score=50.78 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=47.5
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
...+.||++.|++- -+...|+-++.+..|+++.|.+. -.|..+..+..+..+++..|.++ ..|..+...+.++.+++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 45555666666554 33344555555556666666655 55555555555566666666655 55555666666666666
Q ss_pred ccccCC
Q 047563 107 SYNNLS 112 (222)
Q Consensus 107 ~~N~l~ 112 (222)
.+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 655543
No 64
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.56 E-value=0.0012 Score=52.17 Aligned_cols=61 Identities=21% Similarity=0.194 Sum_probs=36.0
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCC
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 88 (222)
++.+..||++.|.+. ..|..+.++..+..+++..|..+ ..|.++..+++++.+++..|.+.
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 344555666666665 55555565555556666666655 56666666666666666666543
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.20 E-value=0.055 Score=24.44 Aligned_cols=13 Identities=62% Similarity=0.902 Sum_probs=4.5
Q ss_pred CCCeEEccCCcCC
Q 047563 76 MIESLDLSNNRLS 88 (222)
Q Consensus 76 ~L~~L~Ls~N~l~ 88 (222)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.77 E-value=0.04 Score=44.89 Aligned_cols=87 Identities=22% Similarity=0.369 Sum_probs=53.9
Q ss_pred CCcccEEEeecCCCCCCCC----hhccCCcCCCeEEccCCcCC---CCcCc-------cCCCCCCCCeEEccCCcCCCcC
Q 047563 26 LNYMVGLDLSCNQLTGNVP----SEIGDLQKIRVLNLSHNCLS---GSIPR-------SFSNLKMIESLDLSNNRLSGQI 91 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~n~l~---~~~p~-------~~~~l~~L~~L~Ls~N~l~~~~ 91 (222)
+..++.++||+|.|...-. ..+.+-.+|+..+++.-... ..+++ .+-.+++|+..+||+|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 6788999999999884322 23444555666665543321 12222 2345677888888888877666
Q ss_pred chhhh----cCcccCceecccccCC
Q 047563 92 PAQLI----ELNFLSNFNVSYNNLS 112 (222)
Q Consensus 92 p~~~~----~l~~L~~L~l~~N~l~ 112 (222)
|..+. .-+.|.+|.+++|.+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC
Confidence 65433 4466778888777653
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.70 E-value=0.094 Score=26.29 Aligned_cols=15 Identities=47% Similarity=0.516 Sum_probs=9.3
Q ss_pred CcccEEEeecCCCCC
Q 047563 27 NYMVGLDLSCNQLTG 41 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~ 41 (222)
++|+.|+|++|.|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666663
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.70 E-value=0.094 Score=26.29 Aligned_cols=15 Identities=47% Similarity=0.516 Sum_probs=9.3
Q ss_pred CcccEEEeecCCCCC
Q 047563 27 NYMVGLDLSCNQLTG 41 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~ 41 (222)
++|+.|+|++|.|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666663
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.29 E-value=0.38 Score=41.70 Aligned_cols=93 Identities=18% Similarity=0.281 Sum_probs=50.0
Q ss_pred CcccEEEeec-CCCCCCCChhccCCcCCCeEEccCC-cCCCCcCccCCCCCCCCeEEccCCcCC--CcCchhhhcC----
Q 047563 27 NYMVGLDLSC-NQLTGNVPSEIGDLQKIRVLNLSHN-CLSGSIPRSFSNLKMIESLDLSNNRLS--GQIPAQLIEL---- 98 (222)
Q Consensus 27 ~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l---- 98 (222)
.+|+.|.+++ +.++ .+|+.+ .++|+.|++++| .+. .+|. +|+.|+++.+... +.+|..+..+
T Consensus 72 ~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~ 141 (426)
T PRK15386 72 NELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINS 141 (426)
T ss_pred CCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHhheeccc
Confidence 4688888876 5554 566554 257888888887 444 4443 3555555554421 1344333322
Q ss_pred --------------cccCceecccccCCCCCCCCCCCCCcCcccccC
Q 047563 99 --------------NFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRG 131 (222)
Q Consensus 99 --------------~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~ 131 (222)
++|+.|++++|.....++. ...+|+.|.+..
T Consensus 142 ~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~--LP~SLk~L~ls~ 186 (426)
T PRK15386 142 YNPENQARIDNLISPSLKTLSLTGCSNIILPEK--LPESLQSITLHI 186 (426)
T ss_pred cccccccccccccCCcccEEEecCCCcccCccc--ccccCcEEEecc
Confidence 3566677766654432221 123555555543
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.77 E-value=0.17 Score=25.30 Aligned_cols=14 Identities=57% Similarity=0.733 Sum_probs=8.3
Q ss_pred CCCCeEEccCCcCC
Q 047563 75 KMIESLDLSNNRLS 88 (222)
Q Consensus 75 ~~L~~L~Ls~N~l~ 88 (222)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.77 E-value=0.17 Score=25.30 Aligned_cols=14 Identities=57% Similarity=0.733 Sum_probs=8.3
Q ss_pred CCCCeEEccCCcCC
Q 047563 75 KMIESLDLSNNRLS 88 (222)
Q Consensus 75 ~~L~~L~Ls~N~l~ 88 (222)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.70 E-value=0.26 Score=34.85 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=50.0
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.+++.|+.+++.++ +.......|...++++.+.+.. .+.......|....+|+.+.+..+ +.......|.++ .++.
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~ 107 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKE 107 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--E
T ss_pred cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceE
Confidence 45778999999886 6656667788888899999976 444355567888999999999776 543444456665 7777
Q ss_pred eeccc
Q 047563 104 FNVSY 108 (222)
Q Consensus 104 L~l~~ 108 (222)
+.+..
T Consensus 108 i~~~~ 112 (129)
T PF13306_consen 108 INIPS 112 (129)
T ss_dssp EE-TT
T ss_pred EEECC
Confidence 77654
No 73
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=88.99 E-value=0.23 Score=33.86 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=2.3
Q ss_pred HHhhhh
Q 047563 189 ILWINS 194 (222)
Q Consensus 189 ~~~~~~ 194 (222)
++|+++
T Consensus 87 ~w~f~~ 92 (96)
T PTZ00382 87 CWWFVC 92 (96)
T ss_pred hheeEE
Confidence 333333
No 74
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=88.85 E-value=0.14 Score=37.74 Aligned_cols=16 Identities=13% Similarity=-0.215 Sum_probs=7.8
Q ss_pred hheeeeeeeehhhhhH
Q 047563 171 LYWSFGASYVTVILGL 186 (222)
Q Consensus 171 ~~~~~~~~~~~~~~~v 186 (222)
+++++++++++.++++
T Consensus 50 IVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLG 65 (154)
T ss_pred EEEEEEecccHHHHHH
Confidence 4455555554444433
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.72 E-value=0.74 Score=37.76 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=65.1
Q ss_pred CCCcccEEEeecCCCCCCCChh----ccCCcCCCeEEccCCcCCCCcCccC-------------CCCCCCCeEEccCCcC
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSE----IGDLQKIRVLNLSHNCLSGSIPRSF-------------SNLKMIESLDLSNNRL 87 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~~-------------~~l~~L~~L~Ls~N~l 87 (222)
.++.|+..+||.|.+....|+. ++.-..|..|.+++|.+....-..+ .+-+.|+......|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 5688899999999988776654 4456778888888887641111111 2346778888888887
Q ss_pred CCcCchh-----hhcCcccCceecccccCCCCCCC------CCCCCCcCcccccCccC
Q 047563 88 SGQIPAQ-----LIELNFLSNFNVSYNNLSGLIPD------KGQYSTFDETSYRGNLY 134 (222)
Q Consensus 88 ~~~~p~~-----~~~l~~L~~L~l~~N~l~~~~p~------~~~l~~l~~l~l~~n~~ 134 (222)
. ..|.. +..-..|+.+.+..|.+....-. .....+|..|+++.|-+
T Consensus 170 e-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 170 E-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred c-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 5 22221 11123556666666655422100 13356667777776655
No 76
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=86.47 E-value=0.66 Score=36.18 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=16.3
Q ss_pred hhhhHhheeeeeeeehhhhhHHHHHhhh
Q 047563 166 IDMVSLYWSFGASYVTVILGLLAILWIN 193 (222)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 193 (222)
.....+++++++|++.++++|++++++|
T Consensus 34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 34 KDYVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ccceeeeeeeecchhhhHHHHHHHHHHH
Confidence 3344556666666666666665555555
No 77
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=85.40 E-value=0.36 Score=39.94 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=10.8
Q ss_pred ehhhhhHHHHHhhhhhhhhhhHHhH
Q 047563 180 VTVILGLLAILWINSFWRKRWFYFI 204 (222)
Q Consensus 180 ~~~~~~v~~~~~~~~~~r~~~~~~~ 204 (222)
+++++++++.+++|+||+++.-+.+
T Consensus 267 iIVLIMvIIYLILRYRRKKKmkKKl 291 (299)
T PF02009_consen 267 IIVLIMVIIYLILRYRRKKKMKKKL 291 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3333444444444444444444433
No 78
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.75 E-value=0.034 Score=45.86 Aligned_cols=86 Identities=21% Similarity=0.218 Sum_probs=51.4
Q ss_pred cccEEEeecCCCCCC-CChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCc-CCCc-CchhhhcCcccCce
Q 047563 28 YMVGLDLSCNQLTGN-VPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR-LSGQ-IPAQLIELNFLSNF 104 (222)
Q Consensus 28 ~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L 104 (222)
.|+.+|||+..|+.. +...+++..+|+.|.+.++.+...+-..+..-.+|..|+++... ++.. ..-.+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 577788888777732 22345566677777777777765555556666677777776543 2211 11124456666677
Q ss_pred ecccccCCC
Q 047563 105 NVSYNNLSG 113 (222)
Q Consensus 105 ~l~~N~l~~ 113 (222)
+++-+.+..
T Consensus 266 NlsWc~l~~ 274 (419)
T KOG2120|consen 266 NLSWCFLFT 274 (419)
T ss_pred CchHhhccc
Confidence 666665543
No 79
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=84.05 E-value=0.29 Score=34.92 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=5.1
Q ss_pred HHHHhhhhhhhhh
Q 047563 187 LAILWINSFWRKR 199 (222)
Q Consensus 187 ~~~~~~~~~~r~~ 199 (222)
+++.|+++|+|+|
T Consensus 82 lli~y~irR~~Kk 94 (122)
T PF01102_consen 82 LLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHS--
T ss_pred HHHHHHHHHHhcc
Confidence 3444444545444
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.97 E-value=0.2 Score=24.56 Aligned_cols=14 Identities=50% Similarity=0.795 Sum_probs=6.2
Q ss_pred CCCCeEEccCCcCC
Q 047563 75 KMIESLDLSNNRLS 88 (222)
Q Consensus 75 ~~L~~L~Ls~N~l~ 88 (222)
++|+.|++++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555544
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.32 E-value=1.2 Score=22.57 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=8.6
Q ss_pred CcccEEEeecCCCC
Q 047563 27 NYMVGLDLSCNQLT 40 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~ 40 (222)
++|+.|+|+.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 82
>PTZ00370 STEVOR; Provisional
Probab=81.30 E-value=0.41 Score=39.00 Aligned_cols=19 Identities=11% Similarity=0.559 Sum_probs=10.3
Q ss_pred hhhHHHHHhhhhhhhhhhH
Q 047563 183 ILGLLAILWINSFWRKRWF 201 (222)
Q Consensus 183 ~~~v~~~~~~~~~~r~~~~ 201 (222)
++++++.+|.+|||+.-|.
T Consensus 269 vvliilYiwlyrrRK~swk 287 (296)
T PTZ00370 269 VVLIILYIWLYRRRKNSWK 287 (296)
T ss_pred HHHHHHHHHHHHhhcchhH
Confidence 3444555666666655554
No 83
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=81.11 E-value=0.39 Score=39.02 Aligned_cols=18 Identities=17% Similarity=0.695 Sum_probs=9.7
Q ss_pred hhhHHHHHhhhhhhhhhh
Q 047563 183 ILGLLAILWINSFWRKRW 200 (222)
Q Consensus 183 ~~~v~~~~~~~~~~r~~~ 200 (222)
++++++.+|.+|||+.-|
T Consensus 273 vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 273 VVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 344455566666555544
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.66 E-value=1.3 Score=22.44 Aligned_cols=16 Identities=38% Similarity=0.796 Sum_probs=8.7
Q ss_pred CCCeEEccCCcCCCcCc
Q 047563 76 MIESLDLSNNRLSGQIP 92 (222)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p 92 (222)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555566666655 344
No 85
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=78.42 E-value=2 Score=28.89 Aligned_cols=28 Identities=7% Similarity=0.165 Sum_probs=14.8
Q ss_pred HhheeeeeeeehhhhhHHHHHhhhhhhh
Q 047563 170 SLYWSFGASYVTVILGLLAILWINSFWR 197 (222)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~~~~~~r 197 (222)
+.++..+.+++++++++.++++++.||+
T Consensus 42 WpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 42 WPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 3444555555555555555555555555
No 86
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=78.26 E-value=0.75 Score=32.66 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhHHhHH
Q 047563 188 AILWINSFWRKRWFYFID 205 (222)
Q Consensus 188 ~~~~~~~~~r~~~~~~~~ 205 (222)
+++|.++|+|+++--.++
T Consensus 98 ~lv~rrcrrr~~~ttPIe 115 (129)
T PF12191_consen 98 FLVWRRCRRREKFTTPIE 115 (129)
T ss_dssp ------------------
T ss_pred HHHHhhhhccccCCCccc
Confidence 344444444444333343
No 87
>PTZ00046 rifin; Provisional
Probab=77.45 E-value=1 Score=38.11 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=11.7
Q ss_pred eehhhhhHHHHHhhhhhhhhhhHHh
Q 047563 179 YVTVILGLLAILWINSFWRKRWFYF 203 (222)
Q Consensus 179 ~~~~~~~v~~~~~~~~~~r~~~~~~ 203 (222)
++++++++++++..|+||+++.-+.
T Consensus 325 vVIVLIMvIIYLILRYRRKKKMkKK 349 (358)
T PTZ00046 325 VVIVLIMVIIYLILRYRRKKKMKKK 349 (358)
T ss_pred HHHHHHHHHHHHHHHhhhcchhHHH
Confidence 3334444444555555555444443
No 88
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=76.72 E-value=0.8 Score=40.15 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=0.0
Q ss_pred eeeeehhhhhHHHHHhhhhhhhhhhHH
Q 047563 176 GASYVTVILGLLAILWINSFWRKRWFY 202 (222)
Q Consensus 176 ~~~~~~~~~~v~~~~~~~~~~r~~~~~ 202 (222)
++++++++++++++++.++++|+++..
T Consensus 360 gvavlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 360 GVAVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHhheeeeehhcccccc
Confidence 333334444444444555555555555
No 89
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=76.05 E-value=1.2 Score=37.63 Aligned_cols=24 Identities=13% Similarity=0.121 Sum_probs=10.8
Q ss_pred ehhhhhHHHHHhhhhhhhhhhHHh
Q 047563 180 VTVILGLLAILWINSFWRKRWFYF 203 (222)
Q Consensus 180 ~~~~~~v~~~~~~~~~~r~~~~~~ 203 (222)
+++++++++.+..|+||+++.-+.
T Consensus 321 vIVLIMvIIYLILRYRRKKKMkKK 344 (353)
T TIGR01477 321 IIVLIMVIIYLILRYRRKKKMKKK 344 (353)
T ss_pred HHHHHHHHHHHHHHhhhcchhHHH
Confidence 333344444444555555444333
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.70 E-value=2 Score=21.88 Aligned_cols=14 Identities=43% Similarity=0.441 Sum_probs=9.0
Q ss_pred CcccEEEeecCCCC
Q 047563 27 NYMVGLDLSCNQLT 40 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~ 40 (222)
+.|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666777777665
No 91
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=74.43 E-value=0.19 Score=41.62 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=40.9
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCc-CCCCc-CccCCCCCCCCeEEccCCcCC
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNC-LSGSI-PRSFSNLKMIESLDLSNNRLS 88 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~-p~~~~~l~~L~~L~Ls~N~l~ 88 (222)
.+.+|+.|.|.++.+...+-..+..=.+|+.|+++... ++... .--+..+..|+.|+++.+.+.
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 34577777788887776666666666778888877643 43111 122566777777777776654
No 92
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=73.13 E-value=1.1 Score=36.89 Aligned_cols=24 Identities=13% Similarity=0.211 Sum_probs=0.0
Q ss_pred HhheeeeeeeehhhhhHHHHHhhh
Q 047563 170 SLYWSFGASYVTVILGLLAILWIN 193 (222)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~~~ 193 (222)
.++.++++++++++++++++++++
T Consensus 148 T~IpaVVI~~iLLIA~iIa~icyr 171 (290)
T PF05454_consen 148 TFIPAVVIAAILLIAGIIACICYR 171 (290)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333343344444444444444433
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=71.52 E-value=1.9 Score=45.43 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=21.7
Q ss_pred EccCCcCCCCcCccCCCCCCCCeEEccCCcCC
Q 047563 57 NLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88 (222)
Q Consensus 57 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 88 (222)
||++|.|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46677777555566777777777777777665
No 94
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=70.66 E-value=0.81 Score=38.11 Aligned_cols=7 Identities=0% Similarity=-0.125 Sum_probs=2.6
Q ss_pred hhhhhhh
Q 047563 193 NSFWRKR 199 (222)
Q Consensus 193 ~~~~r~~ 199 (222)
.|||.++
T Consensus 295 ~Rrr~~~ 301 (306)
T PF01299_consen 295 GRRRSRA 301 (306)
T ss_pred Eeccccc
Confidence 3333333
No 95
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.24 E-value=0.78 Score=35.76 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=37.3
Q ss_pred ccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCC-CCcCccC-CCCCCCCeEEccCCc-CCCcCchhhhcCcccCcee
Q 047563 29 MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLS-GSIPRSF-SNLKMIESLDLSNNR-LSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 29 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~-~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~ 105 (222)
++.+|-++..|..+=-..+.+++.++.|.+.++.-- .+.-..+ +..++|+.|++++|. |+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344666666655443444555555555555544321 1110111 123566666666553 4433333444555555555
Q ss_pred cc
Q 047563 106 VS 107 (222)
Q Consensus 106 l~ 107 (222)
+.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 44
No 96
>PF15050 SCIMP: SCIMP protein
Probab=67.20 E-value=1.8 Score=30.44 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=4.4
Q ss_pred HHHHHhhhhhh
Q 047563 186 LLAILWINSFW 196 (222)
Q Consensus 186 v~~~~~~~~~~ 196 (222)
+.+++++.+||
T Consensus 23 lglIlyCvcR~ 33 (133)
T PF15050_consen 23 LGLILYCVCRW 33 (133)
T ss_pred HHHHHHHHHHH
Confidence 33344433433
No 97
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=66.10 E-value=1.8 Score=32.02 Aligned_cols=30 Identities=7% Similarity=0.052 Sum_probs=17.4
Q ss_pred hhhHhheeeeeeeehhhhhHHHHHhhhhhhh
Q 047563 167 DMVSLYWSFGASYVTVILGLLAILWINSFWR 197 (222)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~r 197 (222)
-.+++++++++.++++ +++++++++++++|
T Consensus 50 IVIGvVVGVGg~ill~-il~lvf~~c~r~kk 79 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLG-ILALVFIFCIRRKK 79 (154)
T ss_pred EEEEEEecccHHHHHH-HHHhheeEEEeccc
Confidence 4677777776655554 45555555555444
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.58 E-value=4.3 Score=36.37 Aligned_cols=59 Identities=27% Similarity=0.215 Sum_probs=30.4
Q ss_pred CCCCCeEEccCCcCCCc--CchhhhcCcccCceecccc--cCCCCCCCC--CCCCCcCcccccCcc
Q 047563 74 LKMIESLDLSNNRLSGQ--IPAQLIELNFLSNFNVSYN--NLSGLIPDK--GQYSTFDETSYRGNL 133 (222)
Q Consensus 74 l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~l~~N--~l~~~~p~~--~~l~~l~~l~l~~n~ 133 (222)
.+.+..++|++|++... +...-...++|..|+|++| .+.... +. .....|+.+-+.|||
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCc
Confidence 34556666777776521 1112223467777777777 332211 11 122345666677777
No 99
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=59.92 E-value=3.3 Score=35.87 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=7.4
Q ss_pred hhHHHHHhhhhhhh
Q 047563 184 LGLLAILWINSFWR 197 (222)
Q Consensus 184 ~~v~~~~~~~~~~r 197 (222)
++.++.|||..|.|
T Consensus 383 lvGfLcWwf~crgk 396 (397)
T PF03302_consen 383 LVGFLCWWFICRGK 396 (397)
T ss_pred HHHHHhhheeeccc
Confidence 44455666665543
No 100
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=57.70 E-value=4.1 Score=29.73 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=8.1
Q ss_pred hhhHHHHHhhhhhhhhhh
Q 047563 183 ILGLLAILWINSFWRKRW 200 (222)
Q Consensus 183 ~~~v~~~~~~~~~~r~~~ 200 (222)
+++++.++||-+|.|++-
T Consensus 43 iiiivli~lcssRKkKaa 60 (189)
T PF05568_consen 43 IIIIVLIYLCSSRKKKAA 60 (189)
T ss_pred HHHHHHHHHHhhhhHHHH
Confidence 333444455544444443
No 101
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=56.31 E-value=8.5 Score=21.59 Aligned_cols=8 Identities=38% Similarity=0.837 Sum_probs=3.3
Q ss_pred HHhhhhhh
Q 047563 189 ILWINSFW 196 (222)
Q Consensus 189 ~~~~~~~~ 196 (222)
..+.+++|
T Consensus 26 a~~iYRKw 33 (43)
T PF08114_consen 26 ALFIYRKW 33 (43)
T ss_pred HHHHHHHH
Confidence 33344444
No 102
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=53.62 E-value=4.1 Score=28.44 Aligned_cols=6 Identities=0% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHhhh
Q 047563 188 AILWIN 193 (222)
Q Consensus 188 ~~~~~~ 193 (222)
..|+++
T Consensus 43 GCWYck 48 (118)
T PF14991_consen 43 GCWYCK 48 (118)
T ss_dssp ------
T ss_pred hheeee
Confidence 333333
No 103
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=52.57 E-value=9.4 Score=31.28 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=10.5
Q ss_pred HHHhhhhhhhhhhHHhHHHhhh
Q 047563 188 AILWINSFWRKRWFYFIDACID 209 (222)
Q Consensus 188 ~~~~~~~~~r~~~~~~~~~~~~ 209 (222)
++++..+..|++.+..||..-+
T Consensus 232 lv~~~vr~krk~k~~eMEr~A~ 253 (278)
T PF06697_consen 232 LVAMLVRYKRKKKIEEMERRAE 253 (278)
T ss_pred HHHhhhhhhHHHHHHHHHHhhc
Confidence 3444444444555555544443
No 104
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=52.12 E-value=9.6 Score=40.67 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=28.6
Q ss_pred EeecCCCCCCCChhccCCcCCCeEEccCCcCC
Q 047563 33 DLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLS 64 (222)
Q Consensus 33 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~ 64 (222)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777888999999999999999875
No 105
>PF15345 TMEM51: Transmembrane protein 51
Probab=50.12 E-value=21 Score=28.34 Aligned_cols=9 Identities=33% Similarity=0.228 Sum_probs=3.3
Q ss_pred HHHHHhhhh
Q 047563 186 LLAILWINS 194 (222)
Q Consensus 186 v~~~~~~~~ 194 (222)
++.+++.+|
T Consensus 73 LLSICL~IR 81 (233)
T PF15345_consen 73 LLSICLSIR 81 (233)
T ss_pred HHHHHHHHH
Confidence 333333333
No 106
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.37 E-value=10 Score=34.05 Aligned_cols=64 Identities=30% Similarity=0.267 Sum_probs=33.8
Q ss_pred CCCcccEEEeecCCCCCCC--ChhccCCcCCCeEEccCC--cCCCCcC-ccCCCCCCCCeEEccCCcCCC
Q 047563 25 NLNYMVGLDLSCNQLTGNV--PSEIGDLQKIRVLNLSHN--CLSGSIP-RSFSNLKMIESLDLSNNRLSG 89 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~n--~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~ 89 (222)
+.+.+..+.|++|++.... ...-...|+|..|+|++| .+..... ..+ +...|+.|-+.+|.+-.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCcccc
Confidence 3456666777777776422 122224566777777777 3321111 111 22346667777777643
No 107
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=48.21 E-value=8.4 Score=22.50 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=7.4
Q ss_pred HHHHHhhhhhhhhhhHH
Q 047563 186 LLAILWINSFWRKRWFY 202 (222)
Q Consensus 186 v~~~~~~~~~~r~~~~~ 202 (222)
+.+++|..++++++.+.
T Consensus 23 ~gi~~w~~~~~~k~~~e 39 (49)
T PF05545_consen 23 IGIVIWAYRPRNKKRFE 39 (49)
T ss_pred HHHHHHHHcccchhhHH
Confidence 33444444444444443
No 108
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=42.42 E-value=5.8 Score=36.14 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=11.1
Q ss_pred HhheeeeeeeehhhhhHHHHHhhhhh
Q 047563 170 SLYWSFGASYVTVILGLLAILWINSF 195 (222)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~~~~~ 195 (222)
|+++++++.+++++++|+++.|+.+|
T Consensus 270 WII~gVlvPv~vV~~Iiiil~~~LCR 295 (684)
T PF12877_consen 270 WIIAGVLVPVLVVLLIIIILYWKLCR 295 (684)
T ss_pred EEEehHhHHHHHHHHHHHHHHHHHhc
Confidence 44444433344444444444444443
No 109
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=41.02 E-value=12 Score=28.84 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=8.0
Q ss_pred heeeeeeeehhhhhHHHHHh
Q 047563 172 YWSFGASYVTVILGLLAILW 191 (222)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~ 191 (222)
.+.+++-+++++++++++.+
T Consensus 159 ~laI~lPvvv~~~~~~~~~~ 178 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGF 178 (189)
T ss_pred eEEEEccHHHHHHHHHHHhh
Confidence 34444444444433333333
No 110
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=39.81 E-value=6 Score=32.61 Aligned_cols=9 Identities=11% Similarity=0.032 Sum_probs=3.5
Q ss_pred hhhhhhhhh
Q 047563 192 INSFWRKRW 200 (222)
Q Consensus 192 ~~~~~r~~~ 200 (222)
+.+|+|.++
T Consensus 253 ~~~r~~~~~ 261 (281)
T PF12768_consen 253 YIRRRRQGY 261 (281)
T ss_pred HHHhhhccC
Confidence 333333344
No 111
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.03 E-value=12 Score=26.63 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=9.1
Q ss_pred hheeeeeeeehhhhhHHHHHhhhh
Q 047563 171 LYWSFGASYVTVILGLLAILWINS 194 (222)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~~~~ 194 (222)
++++++++++++++++..++.-++
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333444444444333
No 112
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=34.63 E-value=28 Score=30.20 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=15.4
Q ss_pred CCCCCeEEccCCc-CCCcC-chhhhcCcccCceecccc
Q 047563 74 LKMIESLDLSNNR-LSGQI-PAQLIELNFLSNFNVSYN 109 (222)
Q Consensus 74 l~~L~~L~Ls~N~-l~~~~-p~~~~~l~~L~~L~l~~N 109 (222)
+++|+.|.+.++. ++... -.....+++|+.|+++.+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 4455555544443 22111 111223455555555544
No 113
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=32.19 E-value=4.5 Score=27.82 Aligned_cols=6 Identities=17% Similarity=-0.340 Sum_probs=2.2
Q ss_pred hhhhhh
Q 047563 193 NSFWRK 198 (222)
Q Consensus 193 ~~~~r~ 198 (222)
+.|.|+
T Consensus 86 ILRer~ 91 (101)
T PF06024_consen 86 ILRERQ 91 (101)
T ss_pred EEeccc
Confidence 333333
No 114
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=31.96 E-value=15 Score=26.37 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=8.5
Q ss_pred ehhhhhHHHHHhhhhhhhhh
Q 047563 180 VTVILGLLAILWINSFWRKR 199 (222)
Q Consensus 180 ~~~~~~v~~~~~~~~~~r~~ 199 (222)
++++++..+.++++++.|++
T Consensus 110 l~~i~is~~~~~~yr~~r~~ 129 (139)
T PHA03099 110 LVGIIITCCLLSVYRFTRRT 129 (139)
T ss_pred HHHHHHHHHHHhhheeeecc
Confidence 33344444444444444444
No 115
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=31.68 E-value=27 Score=25.58 Aligned_cols=9 Identities=22% Similarity=0.113 Sum_probs=3.9
Q ss_pred hhhhhHHhH
Q 047563 196 WRKRWFYFI 204 (222)
Q Consensus 196 ~r~~~~~~~ 204 (222)
++.+|-+..
T Consensus 46 ~~~~yrr~A 54 (146)
T PF14316_consen 46 RRNRYRREA 54 (146)
T ss_pred HccHHHHHH
Confidence 333454443
No 116
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=31.56 E-value=16 Score=30.28 Aligned_cols=36 Identities=22% Similarity=0.043 Sum_probs=0.0
Q ss_pred hHhheeeeeeeehhhhhHHHHHhhhhhhhhhhHHhH
Q 047563 169 VSLYWSFGASYVTVILGLLAILWINSFWRKRWFYFI 204 (222)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~r~~~~~~~ 204 (222)
..+..++.++++++++++++++++++.+|+|.-++-
T Consensus 144 ~yL~T~IpaVVI~~iLLIA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 144 DYLHTFIPAVVIAAILLIAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp ------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 345555545555555666666667776666655443
No 117
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=30.45 E-value=17 Score=27.21 Aligned_cols=9 Identities=11% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhhhhhhhh
Q 047563 192 INSFWRKRW 200 (222)
Q Consensus 192 ~~~~~r~~~ 200 (222)
+.||+.-||
T Consensus 152 vvRKmSGRy 160 (162)
T PF05808_consen 152 VVRKMSGRY 160 (162)
T ss_dssp ---------
T ss_pred Eeehhcccc
Confidence 344444444
No 118
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=29.02 E-value=24 Score=23.26 Aligned_cols=19 Identities=5% Similarity=0.009 Sum_probs=7.7
Q ss_pred hHhheeeeeeeehhhhhHH
Q 047563 169 VSLYWSFGASYVTVILGLL 187 (222)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~ 187 (222)
.+.++..+.+++++++.++
T Consensus 15 ~~yyiiA~gga~llL~~v~ 33 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAVC 33 (87)
T ss_pred eeeHHHhhccHHHHHHHHH
Confidence 3444443334444433333
No 119
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=28.47 E-value=27 Score=29.06 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=19.7
Q ss_pred eeeeeehhhhhHHHHHhhhhhhhhhhHHhHHH
Q 047563 175 FGASYVTVILGLLAILWINSFWRKRWFYFIDA 206 (222)
Q Consensus 175 ~~~~~~~~~~~v~~~~~~~~~~r~~~~~~~~~ 206 (222)
+++++++++++|++++..+.-+|.|-.+.+.+
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRRKKKmkK 289 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRRKKKMKK 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34455556666666666777777666555543
No 120
>PRK00523 hypothetical protein; Provisional
Probab=27.82 E-value=26 Score=22.42 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=6.0
Q ss_pred HhhhhhhhhhhHH
Q 047563 190 LWINSFWRKRWFY 202 (222)
Q Consensus 190 ~~~~~~~r~~~~~ 202 (222)
++.-|++..++++
T Consensus 23 ffiark~~~k~l~ 35 (72)
T PRK00523 23 YFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444455554
No 121
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=27.18 E-value=19 Score=22.15 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=14.5
Q ss_pred hhHHHHHhhhhhhhhhhHHhHHHhhheeeee
Q 047563 184 LGLLAILWINSFWRKRWFYFIDACIDLCYYC 214 (222)
Q Consensus 184 ~~v~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 214 (222)
++.+++.++..++-.+....+...-+++.-+
T Consensus 10 ~~~~~~~~~~~~~i~~pl~~l~~~~~~i~~g 40 (70)
T PF00672_consen 10 LLSLLLAWLLARRITRPLRRLSDAMQRIAQG 40 (70)
T ss_dssp HHHHHHHHH--HTTCCCHHHHHHHCCCCHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3334444444555556666665555554433
No 122
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=27.10 E-value=15 Score=23.94 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=4.0
Q ss_pred HHHhhhhhhhh
Q 047563 188 AILWINSFWRK 198 (222)
Q Consensus 188 ~~~~~~~~~r~ 198 (222)
.++++.-|.|+
T Consensus 52 ~~vy~car~r~ 62 (79)
T PF07213_consen 52 LVVYYCARPRR 62 (79)
T ss_pred HHHHhhccccc
Confidence 33333333333
No 123
>PHA03286 envelope glycoprotein E; Provisional
Probab=26.91 E-value=23 Score=30.99 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=6.9
Q ss_pred hhhHHHHHhhhhhhhh
Q 047563 183 ILGLLAILWINSFWRK 198 (222)
Q Consensus 183 ~~~v~~~~~~~~~~r~ 198 (222)
++.++++.+++||+|+
T Consensus 406 ~~~~~~~~~~~r~~~~ 421 (492)
T PHA03286 406 LFALCIAGLYRRRRRH 421 (492)
T ss_pred HHHHHhHhHhhhhhhh
Confidence 3333444444444443
No 124
>PRK01844 hypothetical protein; Provisional
Probab=26.70 E-value=27 Score=22.34 Aligned_cols=11 Identities=0% Similarity=-0.040 Sum_probs=5.0
Q ss_pred hhhhhhhhHHh
Q 047563 193 NSFWRKRWFYF 203 (222)
Q Consensus 193 ~~~~r~~~~~~ 203 (222)
-|++..++++.
T Consensus 25 ark~~~k~lk~ 35 (72)
T PRK01844 25 ARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHH
Confidence 34444555443
No 125
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=26.42 E-value=54 Score=25.84 Aligned_cols=34 Identities=6% Similarity=-0.026 Sum_probs=20.2
Q ss_pred cchhhhHhheeeeeeeehhhhhHHHHHhhhhhhh
Q 047563 164 SAIDMVSLYWSFGASYVTVILGLLAILWINSFWR 197 (222)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~r 197 (222)
+-......+++.++++++++++++++-+++.+-+
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~ 68 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLVRYCRQSPH 68 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHHHHHhhccc
Confidence 3344444455555666777777777777774433
No 126
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=26.23 E-value=21 Score=23.51 Aligned_cols=10 Identities=10% Similarity=-0.037 Sum_probs=4.5
Q ss_pred HHhHHHhhhe
Q 047563 201 FYFIDACIDL 210 (222)
Q Consensus 201 ~~~~~~~~~~ 210 (222)
.+-+++.+++
T Consensus 40 d~li~RIrer 49 (81)
T PF00558_consen 40 DRLIERIRER 49 (81)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHcc
Confidence 3334555443
No 127
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=25.04 E-value=31 Score=29.58 Aligned_cols=25 Identities=20% Similarity=0.567 Sum_probs=11.6
Q ss_pred eeehhhhhHHHHHhhhhhhhhhhHH
Q 047563 178 SYVTVILGLLAILWINSFWRKRWFY 202 (222)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~~r~~~~~ 202 (222)
++++++++++.++|++++.++|-++
T Consensus 305 ~~~vli~vl~~~~~~~~~~~~~~~~ 329 (361)
T PF12259_consen 305 GAIVLIIVLISLAWLYRTFRRRQLR 329 (361)
T ss_pred HHHHHHHHHHHHHhheeehHHHHhh
Confidence 3333344444555555555544443
No 128
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.10 E-value=33 Score=25.47 Aligned_cols=6 Identities=17% Similarity=0.379 Sum_probs=2.4
Q ss_pred hhhHHh
Q 047563 198 KRWFYF 203 (222)
Q Consensus 198 ~~~~~~ 203 (222)
++|-.+
T Consensus 30 r~Y~~l 35 (151)
T PF14584_consen 30 RRYDAL 35 (151)
T ss_pred HHHHHH
Confidence 444333
No 129
>PHA03265 envelope glycoprotein D; Provisional
Probab=23.87 E-value=67 Score=27.32 Aligned_cols=10 Identities=0% Similarity=0.175 Sum_probs=4.4
Q ss_pred CcccEEEEEE
Q 047563 5 PQQVKVEFVT 14 (222)
Q Consensus 5 ~~~~~~~~~~ 14 (222)
.+|+++.+.+
T Consensus 167 dDELGLvmAA 176 (402)
T PHA03265 167 DDELGLVLAA 176 (402)
T ss_pred ccccceEEec
Confidence 3444444444
No 130
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.37 E-value=31 Score=22.35 Aligned_cols=6 Identities=50% Similarity=0.501 Sum_probs=2.2
Q ss_pred HHhhhh
Q 047563 189 ILWINS 194 (222)
Q Consensus 189 ~~~~~~ 194 (222)
+..++.
T Consensus 23 ~lHY~s 28 (75)
T PF06667_consen 23 ILHYRS 28 (75)
T ss_pred HHHHHH
Confidence 333333
No 131
>PF15179 Myc_target_1: Myc target protein 1
Probab=22.86 E-value=29 Score=26.52 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=11.3
Q ss_pred HhheeeeeeeehhhhhHHHHHhhhh
Q 047563 170 SLYWSFGASYVTVILGLLAILWINS 194 (222)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~~~~ 194 (222)
.+.+.++++++++.++-+++.|.-+
T Consensus 24 aF~vSm~iGLviG~li~~LltwlSR 48 (197)
T PF15179_consen 24 AFCVSMAIGLVIGALIWALLTWLSR 48 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445554444444444444443
No 132
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=22.61 E-value=26 Score=20.85 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=11.2
Q ss_pred eeeehhhhhHHHHHhhhhhhh
Q 047563 177 ASYVTVILGLLAILWINSFWR 197 (222)
Q Consensus 177 ~~~~~~~~~v~~~~~~~~~~r 197 (222)
++++++++.+++++|..++..
T Consensus 10 iSl~l~~~~l~~f~Wavk~GQ 30 (51)
T TIGR00847 10 ISLLLGGVGLVAFLWSLKSGQ 30 (51)
T ss_pred HHHHHHHHHHHHHHHHHccCC
Confidence 444455555566666655443
No 133
>PF02430 AMA-1: Apical membrane antigen 1; InterPro: IPR003298 A novel antigen of Plasmodium falciparum has been cloned that contains a hydrophobic domain typical of an integral membrane protein. The antigen is designated apical membrane antigen 1 (AMA-1) by virtue of appearing to be located in the apical complex []. AMA-1 appears to be transported to the merozoite surface close to the time of schizont rupture. The 66kDa merozoite surface antigen (PK66) of Plasmodium knowlesi, a simian malaria, possesses vaccine-related properties believed to originate from a receptor-like role in parasite invasion of erythrocytes []. The sequence of PK66 is conserved throughout plasmodium, and shows high similarity to P. falciparum AMA-1. Following schizont rupture, the distribution of PK66 changes in a coordinate manner associated with merozoite invasion. Prior to rupture, the protein is concentrated at the apical end, following which it distributes itself entirely across the surface of the free merozoite. Immunofluorescence studies suggest that, during invasion, PK66 is excluded from the erythrocyte at, and behind, the invasion interface []. ; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2Y8R_D 2X2Z_A 2Y8T_A 2Y8S_D 1HN6_A 2Z8V_B 2Z8W_A 1Z40_E 2Q8B_A 2Q8A_A ....
Probab=21.60 E-value=31 Score=30.30 Aligned_cols=11 Identities=9% Similarity=0.631 Sum_probs=0.0
Q ss_pred HHHhhhhhhhh
Q 047563 188 AILWINSFWRK 198 (222)
Q Consensus 188 ~~~~~~~~~r~ 198 (222)
+++++++-|+.
T Consensus 447 ~~~~~k~~~~~ 457 (471)
T PF02430_consen 447 IYWYYKRLWKT 457 (471)
T ss_dssp -----------
T ss_pred HHHHHhhhhcc
Confidence 33334444443
No 134
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=21.38 E-value=21 Score=30.43 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=11.0
Q ss_pred eeeeeehhhhhHHHHHhhhhhhhh
Q 047563 175 FGASYVTVILGLLAILWINSFWRK 198 (222)
Q Consensus 175 ~~~~~~~~~~~v~~~~~~~~~~r~ 198 (222)
++.++-++++++..++++.+|+|+
T Consensus 325 vgLG~P~l~li~Ggl~v~~~r~r~ 348 (350)
T PF15065_consen 325 VGLGVPLLLLILGGLYVCLRRRRK 348 (350)
T ss_pred HHhhHHHHHHHHhhheEEEecccc
Confidence 334444444444444445454444
No 135
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=21.37 E-value=31 Score=29.56 Aligned_cols=14 Identities=7% Similarity=0.484 Sum_probs=0.0
Q ss_pred eeeehhhhhHHHHH
Q 047563 177 ASYVTVILGLLAIL 190 (222)
Q Consensus 177 ~~~~~~~~~v~~~~ 190 (222)
++++++++.+++++
T Consensus 15 IcvaLlVVGi~Cvv 28 (404)
T PF02158_consen 15 ICVALLVVGIVCVV 28 (404)
T ss_dssp --------------
T ss_pred hhHHHHHHHHHHHH
Confidence 33444444454444
No 136
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=21.04 E-value=68 Score=15.53 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=6.9
Q ss_pred CCCCeEEccCCc
Q 047563 75 KMIESLDLSNNR 86 (222)
Q Consensus 75 ~~L~~L~Ls~N~ 86 (222)
++|+.|+++++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666553
No 137
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=20.94 E-value=73 Score=18.17 Aligned_cols=9 Identities=22% Similarity=0.198 Sum_probs=3.8
Q ss_pred hhhhhHHhH
Q 047563 196 WRKRWFYFI 204 (222)
Q Consensus 196 ~r~~~~~~~ 204 (222)
.+++..+.+
T Consensus 29 ~~r~~~~~l 37 (45)
T TIGR03141 29 DRRRLLREL 37 (45)
T ss_pred HHHHHHHHH
Confidence 334444444
No 138
>PF15069 FAM163: FAM163 family
Probab=20.76 E-value=49 Score=24.23 Aligned_cols=6 Identities=0% Similarity=-0.114 Sum_probs=2.2
Q ss_pred HHhhhh
Q 047563 189 ILWINS 194 (222)
Q Consensus 189 ~~~~~~ 194 (222)
++++++
T Consensus 23 aVLCYC 28 (143)
T PF15069_consen 23 AVLCYC 28 (143)
T ss_pred HHHHHH
Confidence 333333
No 139
>PF05950 Orthopox_A36R: Orthopoxvirus A36R protein; InterPro: IPR010274 This family consists of several Orthopoxvirus A36R proteins. The A36R protein is predicted to be a type Ib membrane protein [].
Probab=20.36 E-value=1.3e+02 Score=21.59 Aligned_cols=19 Identities=21% Similarity=0.066 Sum_probs=8.4
Q ss_pred hhhhhHHHHHhhhhhhhhhh
Q 047563 181 TVILGLLAILWINSFWRKRW 200 (222)
Q Consensus 181 ~~~~~v~~~~~~~~~~r~~~ 200 (222)
.+.++++.+++.. |.+.++
T Consensus 13 a~~il~~yily~~-rkki~~ 31 (158)
T PF05950_consen 13 AGTILMCYILYIC-RKKIRT 31 (158)
T ss_pred hhHHHHHHHHHHH-HHHHHH
Confidence 3444444444443 344443
No 140
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=20.20 E-value=34 Score=27.97 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=0.0
Q ss_pred ehhhhhHHHHHhhhhhhh
Q 047563 180 VTVILGLLAILWINSFWR 197 (222)
Q Consensus 180 ~~~~~~v~~~~~~~~~~r 197 (222)
+++++.|...+|+++|+|
T Consensus 236 ILVLLaVGGLLfYr~rrR 253 (285)
T PF05337_consen 236 ILVLLAVGGLLFYRRRRR 253 (285)
T ss_dssp ------------------
T ss_pred hhhhhhccceeeeccccc
Confidence 333334444455444444
No 141
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=20.09 E-value=28 Score=20.09 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=9.9
Q ss_pred eeeehhhhhHHHHHhhhhhh
Q 047563 177 ASYVTVILGLLAILWINSFW 196 (222)
Q Consensus 177 ~~~~~~~~~v~~~~~~~~~~ 196 (222)
++++++++.+++++|..+.+
T Consensus 9 ~sl~l~~~~l~~f~Wavk~G 28 (45)
T PF03597_consen 9 VSLILGLIALAAFLWAVKSG 28 (45)
T ss_pred HHHHHHHHHHHHHHHHHccC
Confidence 33444445555555555543
Done!