Query 047563
Match_columns 222
No_of_seqs 203 out of 2846
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 21:44:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.8 9.3E-19 3.2E-23 160.4 9.9 126 24-150 629-754 (768)
2 2v9t_B SLIT homolog 2 protein 99.7 7.1E-17 2.4E-21 126.6 10.4 114 24-137 53-167 (220)
3 2v70_A SLIT-2, SLIT homolog 2 99.7 4.7E-17 1.6E-21 127.7 9.4 114 24-137 54-168 (220)
4 2wfh_A SLIT homolog 2 protein 99.7 2.3E-16 7.8E-21 121.4 11.0 112 25-137 29-141 (193)
5 1w8a_A SLIT protein; signaling 99.7 2.4E-16 8.2E-21 121.0 9.3 112 26-137 28-141 (192)
6 3e6j_A Variable lymphocyte rec 99.7 6.2E-16 2.1E-20 122.0 11.6 112 25-137 62-174 (229)
7 2o6r_A Variable lymphocyte rec 99.6 1.7E-15 5.8E-20 114.5 11.8 117 22-138 23-140 (177)
8 3m19_A Variable lymphocyte rec 99.6 1.3E-15 4.4E-20 121.5 11.4 113 24-136 56-169 (251)
9 2o6s_A Variable lymphocyte rec 99.6 2.6E-15 9E-20 116.3 11.9 113 25-137 50-163 (208)
10 1ogq_A PGIP-2, polygalacturona 99.6 4.4E-16 1.5E-20 128.3 7.2 114 29-144 199-312 (313)
11 3j0a_A TOLL-like receptor 5; m 99.6 1.2E-16 4.2E-21 147.7 4.1 108 26-137 450-562 (844)
12 3rfs_A Internalin B, repeat mo 99.6 3.5E-15 1.2E-19 120.4 11.8 110 25-134 83-193 (272)
13 1p9a_G Platelet glycoprotein I 99.6 4E-15 1.4E-19 121.4 11.6 111 26-136 99-209 (290)
14 3g39_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 112.1 10.1 106 29-137 11-117 (170)
15 2o6q_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 118.4 12.0 112 25-136 83-195 (270)
16 3m19_A Variable lymphocyte rec 99.6 9.5E-15 3.3E-19 116.4 11.8 112 27-138 35-147 (251)
17 3e6j_A Variable lymphocyte rec 99.6 9.7E-15 3.3E-19 115.1 11.5 115 24-138 37-151 (229)
18 2r9u_A Variable lymphocyte rec 99.6 8.4E-15 2.9E-19 110.8 10.4 105 30-137 15-120 (174)
19 1w8a_A SLIT protein; signaling 99.6 9E-16 3.1E-20 117.8 4.9 116 24-139 51-166 (192)
20 2v9t_B SLIT homolog 2 protein 99.6 9.5E-15 3.3E-19 114.5 10.8 114 26-139 31-145 (220)
21 3v47_A TOLL-like receptor 5B a 99.6 6E-15 2.1E-19 126.8 9.7 116 24-139 296-412 (455)
22 1p9a_G Platelet glycoprotein I 99.6 3.3E-14 1.1E-18 115.9 13.3 114 24-138 74-188 (290)
23 3rfs_A Internalin B, repeat mo 99.6 2.7E-14 9.3E-19 115.2 11.3 111 26-136 108-219 (272)
24 1ozn_A Reticulon 4 receptor; N 99.5 8.3E-15 2.8E-19 118.7 7.5 113 24-136 102-215 (285)
25 4g8a_A TOLL-like receptor 4; l 99.5 1E-14 3.4E-19 129.7 8.7 114 24-137 466-582 (635)
26 4g8a_A TOLL-like receptor 4; l 99.5 1.6E-14 5.5E-19 128.4 9.9 110 27-136 52-162 (635)
27 2v70_A SLIT-2, SLIT homolog 2 99.5 4.6E-14 1.6E-18 110.5 11.0 114 26-139 31-146 (220)
28 2o6s_A Variable lymphocyte rec 99.5 8.5E-14 2.9E-18 107.7 12.2 115 24-138 25-140 (208)
29 2xot_A Amphoterin-induced prot 99.5 3.5E-14 1.2E-18 119.1 9.6 92 25-116 62-153 (361)
30 2ell_A Acidic leucine-rich nuc 99.5 4.9E-14 1.7E-18 105.5 9.3 111 24-136 21-134 (168)
31 2je0_A Acidic leucine-rich nuc 99.5 3.1E-14 1.1E-18 104.4 7.6 109 25-135 15-126 (149)
32 3g39_A Variable lymphocyte rec 99.5 6.3E-14 2.1E-18 105.5 9.3 94 25-118 28-121 (170)
33 2o6q_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 110.6 12.1 116 24-139 58-174 (270)
34 4ezg_A Putative uncharacterize 99.5 6.6E-14 2.3E-18 107.6 9.1 109 24-135 63-172 (197)
35 1ogq_A PGIP-2, polygalacturona 99.5 1.2E-14 4.1E-19 119.7 5.2 109 25-133 74-185 (313)
36 3zyj_A Leucine-rich repeat-con 99.5 5.3E-14 1.8E-18 120.9 9.3 113 24-138 182-295 (440)
37 2r9u_A Variable lymphocyte rec 99.5 9E-14 3.1E-18 105.1 9.3 98 21-118 27-124 (174)
38 2z66_A Variable lymphocyte rec 99.5 3.7E-14 1.3E-18 116.0 7.5 114 24-137 123-238 (306)
39 3zyi_A Leucine-rich repeat-con 99.5 8E-14 2.7E-18 120.2 9.3 113 24-138 193-306 (452)
40 2ell_A Acidic leucine-rich nuc 99.5 8.3E-14 2.8E-18 104.2 8.1 110 24-135 46-160 (168)
41 4fcg_A Uncharacterized protein 99.5 2.9E-13 9.9E-18 112.2 11.9 109 25-135 148-266 (328)
42 2ifg_A High affinity nerve gro 99.5 1.5E-13 5E-18 114.4 9.8 105 31-137 12-118 (347)
43 1ozn_A Reticulon 4 receptor; N 99.5 1.9E-13 6.5E-18 110.7 10.0 114 24-137 77-192 (285)
44 2z63_A TOLL-like receptor 4, v 99.5 1E-13 3.5E-18 122.2 8.8 114 24-137 418-533 (570)
45 2xot_A Amphoterin-induced prot 99.5 1.6E-13 5.5E-18 115.1 9.6 115 25-139 37-153 (361)
46 3vq2_A TLR4, TOLL-like recepto 99.5 5E-14 1.7E-18 125.3 6.5 113 25-137 446-560 (606)
47 2wfh_A SLIT homolog 2 protein 99.5 3.8E-14 1.3E-18 108.9 4.6 93 24-116 51-143 (193)
48 4fcg_A Uncharacterized protein 99.4 3.6E-13 1.2E-17 111.6 10.2 110 25-136 181-291 (328)
49 3rgz_A Protein brassinosteroid 99.4 1.8E-13 6.1E-18 125.4 9.0 110 26-135 441-551 (768)
50 3v47_A TOLL-like receptor 5B a 99.4 3E-13 1E-17 116.1 9.3 114 26-139 274-388 (455)
51 2je0_A Acidic leucine-rich nuc 99.4 8.7E-14 3E-18 102.0 4.7 105 24-130 39-148 (149)
52 2id5_A Lingo-1, leucine rich r 99.4 4.9E-13 1.7E-17 115.8 10.1 111 27-137 224-335 (477)
53 2z66_A Variable lymphocyte rec 99.4 2.7E-13 9.1E-18 110.8 8.0 115 24-138 98-215 (306)
54 3oja_B Anopheles plasmodium-re 99.4 4.9E-13 1.7E-17 119.2 9.7 111 25-135 73-184 (597)
55 2z62_A TOLL-like receptor 4, v 99.4 4.1E-13 1.4E-17 108.2 8.2 109 25-133 50-160 (276)
56 1a9n_A U2A', U2A'; complex (nu 99.4 4.1E-13 1.4E-17 101.3 7.6 110 25-137 17-128 (176)
57 3o6n_A APL1; leucine-rich repe 99.4 8.1E-13 2.8E-17 111.6 10.2 111 25-135 67-178 (390)
58 4ezg_A Putative uncharacterize 99.4 8.5E-13 2.9E-17 101.3 9.1 106 25-133 86-192 (197)
59 4b8c_D Glucose-repressible alc 99.4 4.9E-13 1.7E-17 121.8 8.9 110 24-136 221-330 (727)
60 2o6r_A Variable lymphocyte rec 99.4 6.9E-13 2.3E-17 100.0 8.2 94 24-117 49-142 (177)
61 2id5_A Lingo-1, leucine rich r 99.4 6.9E-13 2.3E-17 114.8 9.4 111 24-134 53-164 (477)
62 2z62_A TOLL-like receptor 4, v 99.4 6.9E-13 2.4E-17 106.9 8.8 110 27-136 28-138 (276)
63 3vq2_A TLR4, TOLL-like recepto 99.4 5.4E-13 1.8E-17 118.6 8.8 107 27-133 32-139 (606)
64 2z80_A TOLL-like receptor 2, v 99.4 1E-12 3.6E-17 109.5 9.5 109 25-133 50-160 (353)
65 1xku_A Decorin; proteoglycan, 99.4 1.4E-12 4.8E-17 107.7 10.1 112 24-138 168-279 (330)
66 2z81_A CD282 antigen, TOLL-lik 99.4 1.1E-12 3.7E-17 115.3 9.3 108 26-133 25-134 (549)
67 3oja_A Leucine-rich immune mol 99.4 4.3E-13 1.5E-17 116.9 6.6 110 25-137 142-252 (487)
68 2z7x_B TOLL-like receptor 1, v 99.4 2.1E-12 7.1E-17 112.9 10.8 113 24-136 345-482 (520)
69 3zyi_A Leucine-rich repeat-con 99.4 1.3E-12 4.5E-17 112.5 9.2 104 27-130 75-179 (452)
70 3t6q_A CD180 antigen; protein- 99.4 1.1E-12 3.7E-17 116.6 8.9 106 28-133 34-140 (606)
71 1dce_A Protein (RAB geranylger 99.4 1.1E-12 3.9E-17 116.3 8.8 107 28-139 442-550 (567)
72 4eco_A Uncharacterized protein 99.4 5.2E-13 1.8E-17 119.9 6.6 112 24-135 203-343 (636)
73 1a9n_A U2A', U2A'; complex (nu 99.4 3E-13 1E-17 102.0 4.2 104 27-133 42-151 (176)
74 3t6q_A CD180 antigen; protein- 99.4 1.6E-12 5.4E-17 115.6 9.3 113 24-136 54-167 (606)
75 1ziw_A TOLL-like receptor 3; i 99.4 1.7E-12 5.8E-17 117.0 9.5 110 25-134 47-157 (680)
76 1dce_A Protein (RAB geranylger 99.4 1.1E-12 3.9E-17 116.3 8.2 101 24-127 460-565 (567)
77 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 2.4E-12 8.3E-17 113.7 10.3 110 24-135 374-486 (562)
78 2ifg_A High affinity nerve gro 99.4 6.4E-13 2.2E-17 110.5 6.1 92 24-116 28-120 (347)
79 1wwl_A Monocyte differentiatio 99.4 3.4E-13 1.2E-17 110.8 4.4 112 24-136 118-242 (312)
80 3j0a_A TOLL-like receptor 5; m 99.4 2.4E-12 8.4E-17 119.0 10.4 110 25-134 46-160 (844)
81 2xwt_C Thyrotropin receptor; s 99.3 2.3E-12 7.9E-17 101.7 8.6 108 25-134 53-168 (239)
82 3zyj_A Leucine-rich repeat-con 99.3 2.6E-12 8.7E-17 110.3 9.4 111 25-135 86-198 (440)
83 2ft3_A Biglycan; proteoglycan, 99.3 2.5E-12 8.4E-17 106.4 8.8 105 28-135 173-277 (332)
84 2z7x_B TOLL-like receptor 1, v 99.3 1.1E-12 3.7E-17 114.7 6.4 105 27-134 21-127 (520)
85 4eco_A Uncharacterized protein 99.3 4.3E-12 1.5E-16 114.0 10.5 107 25-134 455-578 (636)
86 2xwt_C Thyrotropin receptor; s 99.3 1.8E-12 6E-17 102.4 6.8 109 26-135 30-144 (239)
87 3o6n_A APL1; leucine-rich repe 99.3 2.3E-12 7.8E-17 108.8 7.9 116 23-138 41-157 (390)
88 1xku_A Decorin; proteoglycan, 99.3 7.4E-12 2.5E-16 103.3 10.6 113 24-139 142-257 (330)
89 3o53_A Protein LRIM1, AGAP0063 99.3 1.8E-12 6.2E-17 106.7 6.8 108 26-136 143-251 (317)
90 2z80_A TOLL-like receptor 2, v 99.3 1.9E-12 6.4E-17 108.0 6.7 112 24-135 73-187 (353)
91 1ziw_A TOLL-like receptor 3; i 99.3 5.1E-12 1.7E-16 113.8 9.8 111 27-137 25-136 (680)
92 4ecn_A Leucine-rich repeat pro 99.3 1.4E-12 4.8E-17 120.7 5.9 110 25-134 446-585 (876)
93 3oja_B Anopheles plasmodium-re 99.3 3.3E-12 1.1E-16 113.8 7.9 117 23-139 47-164 (597)
94 2z81_A CD282 antigen, TOLL-lik 99.3 2.8E-12 9.7E-17 112.6 7.3 112 24-135 47-161 (549)
95 4fmz_A Internalin; leucine ric 99.3 6.2E-12 2.1E-16 104.3 8.8 108 24-137 218-326 (347)
96 2z63_A TOLL-like receptor 4, v 99.3 6.9E-12 2.4E-16 110.4 9.6 106 28-133 29-135 (570)
97 1wwl_A Monocyte differentiatio 99.3 6.1E-12 2.1E-16 103.3 8.4 111 27-137 149-268 (312)
98 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 4.5E-12 1.5E-16 112.0 8.0 107 26-135 51-159 (562)
99 2ft3_A Biglycan; proteoglycan, 99.3 9E-12 3.1E-16 103.0 9.1 104 27-133 54-158 (332)
100 1h6u_A Internalin H; cell adhe 99.3 4.8E-12 1.6E-16 103.8 7.3 102 25-133 105-206 (308)
101 4glp_A Monocyte differentiatio 99.3 1.2E-11 4E-16 101.4 8.9 112 26-138 144-267 (310)
102 1h6t_A Internalin B; cell adhe 99.3 2.2E-11 7.4E-16 99.2 9.8 82 26-113 67-148 (291)
103 1h6t_A Internalin B; cell adhe 99.3 1E-11 3.4E-16 101.2 7.7 105 24-135 87-191 (291)
104 4ecn_A Leucine-rich repeat pro 99.3 4.9E-12 1.7E-16 117.1 6.2 109 25-135 489-608 (876)
105 1xeu_A Internalin C; cellular 99.3 2.5E-11 8.5E-16 97.5 9.6 107 25-136 61-186 (263)
106 3o53_A Protein LRIM1, AGAP0063 99.2 5.2E-12 1.8E-16 103.9 5.6 110 25-136 118-228 (317)
107 4glp_A Monocyte differentiatio 99.2 9.9E-12 3.4E-16 101.9 7.2 112 25-136 115-238 (310)
108 1h6u_A Internalin H; cell adhe 99.2 2.7E-11 9.4E-16 99.3 9.9 102 26-134 84-185 (308)
109 1m9s_A Internalin B; cell inva 99.2 2E-11 6.7E-16 109.1 9.1 105 25-136 107-211 (605)
110 1xeu_A Internalin C; cellular 99.2 2.7E-11 9.1E-16 97.3 8.2 102 24-133 38-139 (263)
111 1m9s_A Internalin B; cell inva 99.2 5.1E-11 1.7E-15 106.4 8.9 105 24-135 84-188 (605)
112 1o6v_A Internalin A; bacterial 99.2 6.2E-11 2.1E-15 102.4 8.4 103 24-133 262-364 (466)
113 3oja_A Leucine-rich immune mol 99.1 4.7E-11 1.6E-15 104.0 6.5 114 24-139 117-231 (487)
114 4fmz_A Internalin; leucine ric 99.1 8.4E-11 2.9E-15 97.4 7.5 104 24-134 196-299 (347)
115 1o6v_A Internalin A; bacterial 99.1 1.4E-10 4.7E-15 100.3 9.0 103 25-134 241-343 (466)
116 1ds9_A Outer arm dynein; leuci 99.1 5.1E-13 1.7E-17 102.7 -6.0 108 25-137 46-155 (198)
117 4b8c_D Glucose-repressible alc 99.1 2E-10 6.8E-15 104.7 8.7 111 28-140 192-311 (727)
118 4ay9_X Follicle-stimulating ho 99.1 3.3E-10 1.1E-14 94.4 9.2 108 9-117 13-122 (350)
119 3cvr_A Invasion plasmid antige 99.1 2.4E-10 8.4E-15 101.3 7.6 100 25-136 138-244 (571)
120 3bz5_A Internalin-J, INLJ; leu 99.0 6.2E-10 2.1E-14 96.2 8.9 98 25-133 62-159 (457)
121 3cvr_A Invasion plasmid antige 99.0 1.8E-09 6.3E-14 95.6 10.9 97 25-136 98-194 (571)
122 3bz5_A Internalin-J, INLJ; leu 99.0 1.8E-09 6.1E-14 93.3 10.2 99 26-134 41-139 (457)
123 1ds9_A Outer arm dynein; leuci 99.0 4.3E-12 1.5E-16 97.5 -6.3 107 26-136 17-129 (198)
124 3goz_A Leucine-rich repeat-con 98.9 2.1E-10 7.2E-15 96.0 0.2 89 27-115 22-125 (362)
125 2ast_B S-phase kinase-associat 98.9 8E-11 2.7E-15 97.0 -2.4 107 26-132 92-205 (336)
126 2ca6_A RAN GTPase-activating p 98.9 1.4E-10 4.6E-15 97.8 -1.3 112 25-136 185-317 (386)
127 3g06_A SSPH2 (leucine-rich rep 98.9 6.9E-09 2.4E-13 92.9 9.6 77 51-135 221-297 (622)
128 1jl5_A Outer protein YOPM; leu 98.8 1.9E-08 6.5E-13 86.8 10.7 78 27-112 131-208 (454)
129 2ast_B S-phase kinase-associat 98.8 1.4E-10 4.8E-15 95.6 -2.9 110 24-133 115-233 (336)
130 2ca6_A RAN GTPase-activating p 98.8 3E-10 1E-14 95.7 -1.0 110 25-134 92-228 (386)
131 4ay9_X Follicle-stimulating ho 98.8 2.2E-08 7.7E-13 83.2 10.0 86 8-93 33-122 (350)
132 1jl5_A Outer protein YOPM; leu 98.8 2.5E-08 8.4E-13 86.1 10.1 76 51-133 131-206 (454)
133 3g06_A SSPH2 (leucine-rich rep 98.8 4.8E-08 1.6E-12 87.5 11.0 79 25-115 79-157 (622)
134 3goz_A Leucine-rich repeat-con 98.7 2.1E-09 7.3E-14 89.8 2.0 105 31-135 2-122 (362)
135 3sb4_A Hypothetical leucine ri 98.6 4.1E-08 1.4E-12 80.9 6.7 100 26-127 225-326 (329)
136 3rw6_A Nuclear RNA export fact 98.6 4E-08 1.4E-12 78.9 4.4 67 48-116 167-237 (267)
137 1z7x_W Ribonuclease inhibitor; 98.5 1.6E-09 5.6E-14 92.8 -4.7 111 25-135 254-383 (461)
138 1z7x_W Ribonuclease inhibitor; 98.5 2.9E-09 9.8E-14 91.3 -4.3 110 25-134 225-353 (461)
139 3un9_A NLR family member X1; l 98.3 1.7E-08 5.9E-13 84.9 -3.5 106 28-133 127-250 (372)
140 3rw6_A Nuclear RNA export fact 98.3 3.5E-07 1.2E-11 73.4 3.8 61 72-133 167-231 (267)
141 3sb4_A Hypothetical leucine ri 98.3 2.2E-06 7.6E-11 70.4 8.1 57 74-131 225-283 (329)
142 3un9_A NLR family member X1; l 98.2 2.9E-07 9.9E-12 77.4 0.8 90 25-114 153-254 (372)
143 1io0_A Tropomodulin; LRR prote 98.0 3E-07 1E-11 69.7 -1.7 110 24-133 33-162 (185)
144 3ogk_B Coronatine-insensitive 98.0 3E-07 1E-11 81.2 -2.2 60 74-133 462-524 (592)
145 3ogk_B Coronatine-insensitive 97.9 1.3E-06 4.4E-11 77.1 -0.5 82 25-107 162-251 (592)
146 2p1m_B Transport inhibitor res 97.9 1.3E-06 4.4E-11 77.1 -0.8 87 47-134 428-518 (594)
147 1io0_A Tropomodulin; LRR prote 97.8 4.1E-06 1.4E-10 63.3 0.9 88 25-112 63-164 (185)
148 3e4g_A ATP synthase subunit S, 97.7 1.4E-05 4.8E-10 59.9 2.3 82 28-109 62-149 (176)
149 4fdw_A Leucine rich hypothetic 97.6 0.00017 5.8E-09 61.1 7.9 105 27-135 248-358 (401)
150 2p1m_B Transport inhibitor res 97.6 7.6E-06 2.6E-10 72.1 -0.5 87 25-112 430-519 (594)
151 4fdw_A Leucine rich hypothetic 97.6 0.00024 8.4E-09 60.1 8.6 105 24-132 223-333 (401)
152 2ra8_A Uncharacterized protein 97.4 2.9E-05 9.8E-10 65.0 0.6 12 26-37 171-182 (362)
153 3rfe_A Platelet glycoprotein I 97.3 0.00042 1.4E-08 49.1 6.1 38 76-113 32-69 (130)
154 3rfe_A Platelet glycoprotein I 97.1 0.0009 3.1E-08 47.4 5.8 57 30-88 11-68 (130)
155 2ra8_A Uncharacterized protein 97.0 0.00017 5.7E-09 60.3 1.5 110 25-134 191-319 (362)
156 3e4g_A ATP synthase subunit S, 97.0 0.00017 5.7E-09 54.0 1.0 84 51-134 61-151 (176)
157 4gt6_A Cell surface protein; l 96.5 0.0066 2.3E-07 50.8 7.4 106 24-133 262-368 (394)
158 4h09_A Hypothetical leucine ri 96.4 0.024 8.1E-07 46.9 10.4 102 25-129 238-340 (379)
159 4fs7_A Uncharacterized protein 96.4 0.0045 1.6E-07 51.8 5.6 101 25-131 274-375 (394)
160 4gt6_A Cell surface protein; l 96.2 0.011 3.8E-07 49.4 7.3 85 24-111 285-369 (394)
161 4h09_A Hypothetical leucine ri 96.1 0.012 4E-07 48.8 6.5 84 24-109 260-343 (379)
162 1pgv_A TMD-1, tropomodulin TMD 95.5 0.0035 1.2E-07 47.6 0.9 62 27-88 41-111 (197)
163 4fs7_A Uncharacterized protein 95.4 0.034 1.2E-06 46.4 6.8 103 24-132 250-353 (394)
164 1pgv_A TMD-1, tropomodulin TMD 93.9 0.021 7.2E-07 43.3 1.7 85 27-111 70-169 (197)
165 2ks1_B Epidermal growth factor 92.7 0.016 5.6E-07 32.5 -0.4 13 184-196 26-38 (44)
166 2l2t_A Receptor tyrosine-prote 90.5 0.057 1.9E-06 30.3 0.3 19 179-197 20-38 (44)
167 2lz0_A Uncharacterized protein 57.8 30 0.001 22.5 5.8 42 42-84 11-52 (100)
168 2lz0_A Uncharacterized protein 53.4 19 0.00066 23.5 4.2 46 62-108 7-52 (100)
169 2klu_A T-cell surface glycopro 39.5 4.2 0.00014 24.6 -0.7 15 176-190 15-29 (70)
170 1cd1_A CD1, MCD1D.1; immunolog 39.1 6.4 0.00022 31.7 0.0 9 189-197 302-310 (315)
171 2knc_A Integrin alpha-IIB; tra 38.5 7.4 0.00025 22.6 0.2 7 185-191 28-34 (54)
172 1q55_A EP-cadherin, C-cadherin 37.6 7 0.00024 36.3 0.0 9 205-213 743-751 (880)
173 2l8s_A Integrin alpha-1; trans 30.9 8.6 0.00029 22.3 -0.3 6 186-191 26-31 (54)
174 2llm_A Amyloid beta A4 protein 30.1 16 0.00055 20.0 0.0 8 185-192 33-40 (43)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.76 E-value=9.3e-19 Score=160.39 Aligned_cols=126 Identities=39% Similarity=0.651 Sum_probs=117.7
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++++|+.|||++|.++|.+|..++.+++|+.|++++|.++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCCCCCCCCCCCCCCCCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEK 150 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~~~~~C~~~~~~ 150 (222)
|++++|+++|.+|...++..+....+.||+.+|++|.. .|......
T Consensus 709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~ 754 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNAD 754 (768)
T ss_dssp EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC--
T ss_pred EECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccC
Confidence 99999999999999989999999999999999998866 88765443
No 2
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=7.1e-17 Score=126.65 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=97.1
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|+|++|.+++..|..|.++++|+.|++++|.++...+..|..+++|+.|+|++|++++..|..|..+++|+.
T Consensus 53 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 45788899999999998888888888999999999999988666667888899999999999998887888888899999
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
|++++|.+++.++.. ..+++|+.+++.+|++.|.
T Consensus 133 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred EECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 999999998887764 6678888888999988774
No 3
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=127.69 Aligned_cols=114 Identities=16% Similarity=0.222 Sum_probs=100.0
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 46889999999999999877778999999999999999998777888999999999999999999888888889999999
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
|++++|.+++.+|.. ..+++|+.+++.+|++.|.
T Consensus 134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp EECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred EECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999999999887765 6788899999999998874
No 4
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=121.38 Aligned_cols=112 Identities=26% Similarity=0.279 Sum_probs=103.4
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
-.+.++.|++++|.++ .+|..|..+++|+.|++++|.+++..+..|.++++|+.|+|++|++++..|..|..+++|+.|
T Consensus 29 ~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 29 IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 3468999999999999 777899999999999999999998888899999999999999999998888889999999999
Q ss_pred ecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
++++|.++..++.. ..+++|+.+++.+|++.|.
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred ECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999999988765 6789999999999999884
No 5
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=2.4e-16 Score=121.03 Aligned_cols=112 Identities=21% Similarity=0.290 Sum_probs=101.8
Q ss_pred CCcccEEEeecCCCCCCCCh-hccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 26 LNYMVGLDLSCNQLTGNVPS-EIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
...++.|++++|.+++..+. .|..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..+++|+.|
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 35899999999999977665 48899999999999999998889999999999999999999998888889999999999
Q ss_pred ecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
++++|++++.+|.. ..+++|+.+++.+|++.|.
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99999999987765 6788999999999999875
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=6.2e-16 Score=121.95 Aligned_cols=112 Identities=22% Similarity=0.287 Sum_probs=73.1
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++++|+.|+|++|.++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|+++ .+|..+..+++|+.|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence 4566666666666666554555666666666666666666555555666666777777777666 556666666777777
Q ss_pred ecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
++++|.+++.++.. ..+++|+.+++.+|++.|.
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 77777776665543 4566677777777776654
No 7
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=1.7e-15 Score=114.52 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=103.7
Q ss_pred CCCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCccc
Q 047563 22 NGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFL 101 (222)
Q Consensus 22 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 101 (222)
+....++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|
T Consensus 23 p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 23 PTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL 102 (177)
T ss_dssp CTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc
Confidence 33445799999999999997777788999999999999999997777778999999999999999997777778899999
Q ss_pred CceecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563 102 SNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP 138 (222)
Q Consensus 102 ~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~ 138 (222)
+.|++++|.+++.++.. ..+++|+.+++.+|++.|..
T Consensus 103 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 99999999999888765 66889999999999988743
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=1.3e-15 Score=121.50 Aligned_cols=113 Identities=22% Similarity=0.272 Sum_probs=76.7
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.
T Consensus 56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 135 (251)
T 3m19_A 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence 35677777777777777666666777777777777777777666666677777777777777777555555666677777
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c 136 (222)
|++++|.+++.++.. ..+++|+.+++.+|.+..
T Consensus 136 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred EECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 777777776666543 456666666666666543
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=2.6e-15 Score=116.29 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=79.2
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence 56677777777777775555566677777777777777775555566777777777777777775555556777777777
Q ss_pred ecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
++++|.+++.++.. ..+++|+.+++.+|++.|.
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence 77777777666653 5567777777777776654
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.62 E-value=4.4e-16 Score=128.31 Aligned_cols=114 Identities=34% Similarity=0.575 Sum_probs=100.9
Q ss_pred ccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceeccc
Q 047563 29 MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY 108 (222)
Q Consensus 29 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 108 (222)
|+.|++++|.+++..|..+..+++|+.|++++|.+++..|. +..+++|+.|++++|++++.+|..+..+++|+.|++++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 78888888888888888888899999999999998866665 78889999999999999989999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcCcccccCccCCCCCCCCCCC
Q 047563 109 NNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSC 144 (222)
Q Consensus 109 N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~~~~~C 144 (222)
|++++.+|....+++|+.+++.+|+.+|+.|.. .|
T Consensus 278 N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp SEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999998888999999999999999987654 45
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.62 E-value=1.2e-16 Score=147.74 Aligned_cols=108 Identities=26% Similarity=0.283 Sum_probs=85.4
Q ss_pred CCcccEEEeecCCCC-----CCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcc
Q 047563 26 LNYMVGLDLSCNQLT-----GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNF 100 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 100 (222)
+++|+.|+|++|.++ +..+..|.++++|+.|++++|.+++..|..|..+++|+.|+|++|++++..|..+. ++
T Consensus 450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~ 527 (844)
T 3j0a_A 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--AN 527 (844)
T ss_dssp CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SC
T ss_pred CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cc
Confidence 456666666666665 33345577788888888888888888888888999999999999999876665544 78
Q ss_pred cCceecccccCCCCCCCCCCCCCcCcccccCccCCCC
Q 047563 101 LSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 101 L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~ 137 (222)
|+.|++++|++++.+|.. +.+++.+++.+|++.|.
T Consensus 528 L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 528 LEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICE 562 (844)
T ss_dssp CCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCS
T ss_pred ccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccc
Confidence 999999999999888764 56889999999999984
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=3.5e-15 Score=120.41 Aligned_cols=110 Identities=23% Similarity=0.273 Sum_probs=56.1
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
.+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 44555555555555554444445555555555555555554444445555555555555555554444444455555555
Q ss_pred ecccccCCCCCCCC-CCCCCcCcccccCccC
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLY 134 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~ 134 (222)
++++|.+++.++.. ..+++|+.+++.+|.+
T Consensus 163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 55555555444433 3444455555555443
No 13
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=4e-15 Score=121.39 Aligned_cols=111 Identities=24% Similarity=0.207 Sum_probs=52.8
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 105 (222)
+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+.|++++|+++...+..+..+++|+.|+
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 44444444444444444444444444455555555544444444444444555555555555433333344445555555
Q ss_pred cccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563 106 VSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 106 l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c 136 (222)
+++|+++..++.......++.+.+.+|++.|
T Consensus 179 L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 5555555444333344445555555555554
No 14
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=4e-15 Score=112.07 Aligned_cols=106 Identities=23% Similarity=0.278 Sum_probs=61.1
Q ss_pred ccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceeccc
Q 047563 29 MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY 108 (222)
Q Consensus 29 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 108 (222)
.+.+++++|.++ .+|..+ .++++.|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345666666665 344433 25566666666666655555566666666666666666654444555666666666666
Q ss_pred ccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 109 NNLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 109 N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
|.+++.++.. ..+++|+.+++.+|++.|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 6666555543 4555666666666665553
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=7.3e-15 Score=118.36 Aligned_cols=112 Identities=20% Similarity=0.213 Sum_probs=74.3
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 46677777777777776555666677777777777777776666666677777777777777765555556666677777
Q ss_pred ecccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c 136 (222)
++++|.+++.++.. ..+++|+.+++.+|.+..
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 77777666665543 455666666666665443
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=9.5e-15 Score=116.45 Aligned_cols=112 Identities=24% Similarity=0.251 Sum_probs=79.2
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
+.++.|+|++|.+++..+..|.++++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 56777777777777666666777777777777777777666666777777777777777777666666677777777777
Q ss_pred ccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563 107 SYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP 138 (222)
Q Consensus 107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~ 138 (222)
++|.+++.++.. ..+++|+.+++.+|.+...+
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 777777666654 55677777777777654433
No 17
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=9.7e-15 Score=115.06 Aligned_cols=115 Identities=23% Similarity=0.206 Sum_probs=102.7
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.-.++|+.|+|++|.+++..|..|..+++|+.|++++|.++...+..|..+++|+.|+|++|++++..+..+..+++|+.
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 34578999999999999988999999999999999999998766778899999999999999999777777899999999
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCCCCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCP 138 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~ 138 (222)
|++++|.++.++.....+++|+.+++.+|.+...+
T Consensus 117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp EECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred EeccCCcccccCcccccCCCCCEEECCCCcCCccC
Confidence 99999999977666678899999999999866443
No 18
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=8.4e-15 Score=110.76 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=62.7
Q ss_pred cEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccc
Q 047563 30 VGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN 109 (222)
Q Consensus 30 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 109 (222)
+.+++++|.++ .+|..+. ++|+.|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666665 4444432 55666666666666555666666666666666666666544444556666666666666
Q ss_pred cCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 110 NLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 110 ~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
.+++.++.. ..+++|+.+++.+|++.|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 666655542 4556666666666665553
No 19
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=9e-16 Score=117.81 Aligned_cols=116 Identities=24% Similarity=0.287 Sum_probs=97.1
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 46899999999999999988999999999999999999999888888999999999999999999999999999999999
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCCCCCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPT 139 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~ 139 (222)
|++++|++++..+..+....++...+.++...|..|
T Consensus 131 L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 131 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp EECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred EEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 999999999876532222223333444454455443
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=9.5e-15 Score=114.45 Aligned_cols=114 Identities=20% Similarity=0.237 Sum_probs=102.8
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 105 (222)
.+.++.|++++|.+++..+..|..+++|+.|++++|.+++..|..|.++++|+.|+|++|+++...+..|..+++|+.|+
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 36899999999999988888999999999999999999988899999999999999999999966666788999999999
Q ss_pred cccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563 106 VSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT 139 (222)
Q Consensus 106 l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~ 139 (222)
+++|.+++..|.. ..+++|+.+++.+|.+...++
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 9999999998776 678999999999998665443
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.57 E-value=6e-15 Score=126.80 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=97.2
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..+++|+.
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 45788888888888888777888888888888888888888777788888888999999998888777888888888999
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT 139 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~ 139 (222)
|++++|++++.++.. ..+++|+.+++.+|++.|..+
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999888877765 678888888888888877544
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=3.3e-14 Score=115.90 Aligned_cols=114 Identities=26% Similarity=0.297 Sum_probs=92.1
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 56778888888888887 66777788888888888888888777778888888888888888888776777788888888
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP 138 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~ 138 (222)
|++++|++++.++.. ..+++|+.+++.+|.+...+
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence 888888888877665 56788888888888765443
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=2.7e-14 Score=115.16 Aligned_cols=111 Identities=23% Similarity=0.248 Sum_probs=52.1
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 105 (222)
+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 44444455555544444444444444455555555544444444444444455555555544444343344444455555
Q ss_pred cccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563 106 VSYNNLSGLIPDK-GQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 106 l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c 136 (222)
+++|.+++.++.. ..+++|+.+++.+|++.|
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 5555444444432 334444444444444443
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.54 E-value=8.3e-15 Score=118.73 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=79.8
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 34677777777777777666777777777777777777777655566777777777777777777555555677777777
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c 136 (222)
|++++|.+++..|.. ..+++|+.+++.+|.+..
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 777777777765544 556667777777766543
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.54 E-value=1e-14 Score=129.72 Aligned_cols=114 Identities=19% Similarity=0.262 Sum_probs=100.9
Q ss_pred CCCCcccEEEeecCCCC-CCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563 24 SNLNYMVGLDLSCNQLT-GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 102 (222)
..++.++.|++++|.+. +..|..|..+++|+.|++++|.+++..|..|.++++|+.|+|++|++++..|..+..+++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 35678888899888743 45678899999999999999999988899999999999999999999988888999999999
Q ss_pred ceecccccCCCCCCCC-CCC-CCcCcccccCccCCCC
Q 047563 103 NFNVSYNNLSGLIPDK-GQY-STFDETSYRGNLYLSC 137 (222)
Q Consensus 103 ~L~l~~N~l~~~~p~~-~~l-~~l~~l~l~~n~~~c~ 137 (222)
.|++++|++++.+|.. ..+ ++|+.+++++||+.|.
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999999998876 444 6899999999999985
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.54 E-value=1.6e-14 Score=128.35 Aligned_cols=110 Identities=23% Similarity=0.207 Sum_probs=96.3
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
+.++.|||++|.|++..+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|++++..+..|.++++|+.|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 37899999999999877888999999999999999999777888999999999999999999777778899999999999
Q ss_pred ccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563 107 SYNNLSGLIPDK-GQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c 136 (222)
++|++++.++.. +.+++|+.+++.+|.+..
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence 999999887764 778889999998887654
No 27
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=4.6e-14 Score=110.55 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=101.3
Q ss_pred CCcccEEEeecCCCCCCCC-hhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 26 LNYMVGLDLSCNQLTGNVP-SEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
...++.|+|++|.+++..+ ..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 4578899999999997755 458899999999999999998888899999999999999999998888889999999999
Q ss_pred ecccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT 139 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~ 139 (222)
++++|.+++..|.. ..+++|+.+++.+|.+....+
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 99999999997765 678999999999998665433
No 28
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=8.5e-14 Score=107.70 Aligned_cols=115 Identities=22% Similarity=0.219 Sum_probs=101.6
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
...++++.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 34578999999999999777778899999999999999999777777899999999999999999777777899999999
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP 138 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~ 138 (222)
|++++|.+++.++.. ..+++|+.+++.+|.+...+
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence 999999999988775 67899999999999865433
No 29
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=3.5e-14 Score=119.10 Aligned_cols=92 Identities=26% Similarity=0.225 Sum_probs=53.9
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++++|+.|+|++|.|++..+..|..+++|+.|++++|.++...+..|..+++|+.|+|++|++++..|..|..+++|+.|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 45566666666666665555556666666666666666654444555566666666666666655555555555666666
Q ss_pred ecccccCCCCCC
Q 047563 105 NVSYNNLSGLIP 116 (222)
Q Consensus 105 ~l~~N~l~~~~p 116 (222)
++++|.+++.++
T Consensus 142 ~L~~N~l~~l~~ 153 (361)
T 2xot_A 142 YLSQNQISRFPV 153 (361)
T ss_dssp ECCSSCCCSCCG
T ss_pred ECCCCcCCeeCH
Confidence 666665555443
No 30
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=4.9e-14 Score=105.45 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=83.4
Q ss_pred CCCCcccEEEeecCCCC-CCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563 24 SNLNYMVGLDLSCNQLT-GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 102 (222)
...++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++.+.+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34567888888888887 66677777788888888888887754 6677788888888888888866777777788888
Q ss_pred ceecccccCCCCC--CCCCCCCCcCcccccCccCCC
Q 047563 103 NFNVSYNNLSGLI--PDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 103 ~L~l~~N~l~~~~--p~~~~l~~l~~l~l~~n~~~c 136 (222)
.|++++|.+++.+ +....+++|+.+++.+|++..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 8888888887754 334667778888888877543
No 31
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=3.1e-14 Score=104.45 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=94.5
Q ss_pred CCCcccEEEeecCCCC-CCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 25 NLNYMVGLDLSCNQLT-GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..++++.|++++|.++ +..|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++.+|..+..+++|+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4578999999999998 77888889999999999999999865 77889999999999999999778888888999999
Q ss_pred eecccccCCCCC--CCCCCCCCcCcccccCccCC
Q 047563 104 FNVSYNNLSGLI--PDKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 104 L~l~~N~l~~~~--p~~~~l~~l~~l~l~~n~~~ 135 (222)
|++++|.+++.+ +....+++|+.+++.+|++.
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 999999998853 34467888999999998754
No 32
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=6.3e-14 Score=105.47 Aligned_cols=94 Identities=22% Similarity=0.185 Sum_probs=86.2
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
-.+.|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|
T Consensus 28 ~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 28 IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEE
Confidence 35789999999999998889999999999999999999998777889999999999999999997777789999999999
Q ss_pred ecccccCCCCCCCC
Q 047563 105 NVSYNNLSGLIPDK 118 (222)
Q Consensus 105 ~l~~N~l~~~~p~~ 118 (222)
++++|++.+.++..
T Consensus 108 ~L~~N~~~c~c~~l 121 (170)
T 3g39_A 108 WLLNNPWDCACSDI 121 (170)
T ss_dssp ECCSSCBCTTBGGG
T ss_pred EeCCCCCCCCchhH
Confidence 99999999887644
No 33
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.5e-13 Score=110.64 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=99.4
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++++|+.|++++|.++...+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++++..+..+..+++|+.
T Consensus 58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE
Confidence 46889999999999999766677788999999999999999777778899999999999999999877788889999999
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT 139 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~ 139 (222)
|++++|.+++.++.. ..+++|+.+++.+|.+...++
T Consensus 138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 999999999887764 678899999999887655443
No 34
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=6.6e-14 Score=107.61 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=86.5
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|++++|.++ .++.+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.
T Consensus 63 ~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 63 EYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp GGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred hcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 45778888888888665 2346788888888888888888777888888888888888888888777888888888888
Q ss_pred eeccccc-CCCCCCCCCCCCCcCcccccCccCC
Q 047563 104 FNVSYNN-LSGLIPDKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 104 L~l~~N~-l~~~~p~~~~l~~l~~l~l~~n~~~ 135 (222)
|++++|. ++.. |....+++|+.+++.+|.+.
T Consensus 141 L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 141 IDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EECCSCTBCCCC-GGGGGCSSCCEEECTTBCCC
T ss_pred EEccCCCCcccc-HhhcCCCCCCEEECCCCCCc
Confidence 8888887 5544 44567788888888888754
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.50 E-value=1.2e-14 Score=119.67 Aligned_cols=109 Identities=35% Similarity=0.575 Sum_probs=60.9
Q ss_pred CCCcccEEEeec-CCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 25 NLNYMVGLDLSC-NQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 25 ~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
++++|+.|++++ |.+.+..|..|..+++|++|++++|.+++..|..|..+++|++|++++|++.+.+|..+..+++|+.
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 355555566653 5555555555555566666666666555555555555556666666666555555555555555666
Q ss_pred eecccccCCCCCCCC-CCCC-CcCcccccCcc
Q 047563 104 FNVSYNNLSGLIPDK-GQYS-TFDETSYRGNL 133 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~-~l~~l~l~~n~ 133 (222)
|++++|.+++..|.. ..+. .|+.+++.+|.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 666655555444432 3333 45555555554
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.50 E-value=5.3e-14 Score=120.89 Aligned_cols=113 Identities=24% Similarity=0.266 Sum_probs=100.7
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++++|+.|+|++|.++ .+|. +..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.
T Consensus 182 ~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp TTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred hcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 45788899999999988 4553 788899999999999999888899999999999999999999888889999999999
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP 138 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~ 138 (222)
|++++|++++.++.. ..+++|+.+++.+|++.|..
T Consensus 260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred EECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 999999999988776 67889999999999998853
No 37
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=9e-14 Score=105.06 Aligned_cols=98 Identities=21% Similarity=0.183 Sum_probs=86.7
Q ss_pred eCCCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcc
Q 047563 21 YNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNF 100 (222)
Q Consensus 21 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 100 (222)
.+..-.+.|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++
T Consensus 27 iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 106 (174)
T 2r9u_A 27 VPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKS 106 (174)
T ss_dssp CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccC
Confidence 33334579999999999999888999999999999999999999777777899999999999999999766667999999
Q ss_pred cCceecccccCCCCCCCC
Q 047563 101 LSNFNVSYNNLSGLIPDK 118 (222)
Q Consensus 101 L~~L~l~~N~l~~~~p~~ 118 (222)
|+.|++++|++.+.++..
T Consensus 107 L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 107 LTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp CSEEECCSSCBCTTBGGG
T ss_pred CCEEEeCCCCcccccccH
Confidence 999999999999876543
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.49 E-value=3.7e-14 Score=115.95 Aligned_cols=114 Identities=23% Similarity=0.288 Sum_probs=91.5
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCC-CcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSG-SIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 102 (222)
..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|++++..|..+..+++|+
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 457788888888888887778888888888888888888875 5677888888888888888888877777888888888
Q ss_pred ceecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 103 NFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 103 ~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
.|++++|.+++.++.. ..+++|+.+++.+|.+...
T Consensus 203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred EEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 8888888888776643 5677888888888876543
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.48 E-value=8e-14 Score=120.16 Aligned_cols=113 Identities=23% Similarity=0.214 Sum_probs=101.0
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++++|+.|+|++|.+++ .| .+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..+++|+.
T Consensus 193 ~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270 (452)
T ss_dssp TTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence 467889999999999984 44 4788999999999999999888999999999999999999999888999999999999
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP 138 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~ 138 (222)
|++++|.+++.++.. ..+++|+.+++.+|++.|..
T Consensus 271 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp EECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred EECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 999999999888776 67889999999999998854
No 40
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=8.3e-14 Score=104.19 Aligned_cols=110 Identities=19% Similarity=0.147 Sum_probs=96.7
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcC-chhhhcCcccC
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI-PAQLIELNFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~ 102 (222)
..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.. +..+..+++|+
T Consensus 46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 4688999999999999966 77899999999999999999778888888999999999999999542 27888999999
Q ss_pred ceecccccCCCCCC----CCCCCCCcCcccccCccCC
Q 047563 103 NFNVSYNNLSGLIP----DKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 103 ~L~l~~N~l~~~~p----~~~~l~~l~~l~l~~n~~~ 135 (222)
.|++++|++++.++ ....+++|+.+++.+|...
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999999998877 3477889999999888754
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.48 E-value=2.9e-13 Score=112.16 Aligned_cols=109 Identities=20% Similarity=0.288 Sum_probs=70.8
Q ss_pred CCCcccEEEeecCCCCCCCChhccC---------CcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhh
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGD---------LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQL 95 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~---------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 95 (222)
++++|+.|++++|.+.+..|..+.. +++|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+|..+
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l 225 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh
Confidence 4666777777776666666665443 667777777777666 66666666677777777777766 345556
Q ss_pred hcCcccCceecccccCCCCCCCC-CCCCCcCcccccCccCC
Q 047563 96 IELNFLSNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYL 135 (222)
Q Consensus 96 ~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~ 135 (222)
..+++|+.|++++|.+.+.+|.. ..+++|+.+++.+|...
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence 66667777777776666665554 55666666666665543
No 42
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.47 E-value=1.5e-13 Score=114.41 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=73.1
Q ss_pred EEEeecC-CCCCCCChhccCCcCCCeEEccC-CcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceeccc
Q 047563 31 GLDLSCN-QLTGNVPSEIGDLQKIRVLNLSH-NCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY 108 (222)
Q Consensus 31 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 108 (222)
.++++++ .++ .+|. +..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 676 4566 77777777777775 777766666777777777777777777777777777777777777777
Q ss_pred ccCCCCCCCCCCCCCcCcccccCccCCCC
Q 047563 109 NNLSGLIPDKGQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 109 N~l~~~~p~~~~l~~l~~l~l~~n~~~c~ 137 (222)
|+|++.++.......|+.+++.+|++.|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCC
Confidence 77777666553322377777777777663
No 43
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.47 E-value=1.9e-13 Score=110.68 Aligned_cols=114 Identities=22% Similarity=0.248 Sum_probs=101.5
Q ss_pred CCCCcccEEEeecCC-CCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563 24 SNLNYMVGLDLSCNQ-LTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 102 (222)
.++++|+.|++++|. ++...|..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence 468899999999997 8877788899999999999999999988888899999999999999999977777789999999
Q ss_pred ceecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 103 NFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 103 ~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
.|++++|.+++.++.. ..+++|+.+++.+|.+...
T Consensus 157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred EEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 9999999999887764 6788999999999986543
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=122.18 Aligned_cols=114 Identities=20% Similarity=0.293 Sum_probs=90.7
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCC-CCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLS-GSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 102 (222)
.++++|+.|++++|.+++..|..+..+++|+.|++++|.++ +..|..+..+++|+.|++++|++++..|..+..+++|+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 45677888888888887777777888888888888888876 46777788888888888888888877788888888888
Q ss_pred ceecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 103 NFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 103 ~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
.|++++|.+++.++.. ..+++|+.+++.+|++.|.
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 8888888888877664 6677888888888887764
No 45
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=1.6e-13 Score=115.08 Aligned_cols=115 Identities=23% Similarity=0.185 Sum_probs=102.6
Q ss_pred CCCcccEEEeecCCCCCCCChhcc-CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIG-DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
-.+.++.|+|++|.+++..+..|. .+++|+.|++++|.+++..+..|..+++|+.|+|++|+++...+..|..+++|+.
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 345789999999999988888887 9999999999999999888888999999999999999999777788999999999
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT 139 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~ 139 (222)
|++++|.+++..+.. ..+++|+.|++.+|.+...+.
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence 999999999987765 678999999999998765443
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.46 E-value=5e-14 Score=125.27 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=63.5
Q ss_pred CCCcccEEEeecCCCCC-CCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 25 NLNYMVGLDLSCNQLTG-NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
++++|+.|++++|.+++ ..|..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..+++|+.
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 34455555555555554 24445555555555555555555555555556666666666666666555555666666666
Q ss_pred eecccccCCCCCCCCCCCC-CcCcccccCccCCCC
Q 047563 104 FNVSYNNLSGLIPDKGQYS-TFDETSYRGNLYLSC 137 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~-~l~~l~l~~n~~~c~ 137 (222)
|++++|+++..++....++ +|+.+++.+|++.|.
T Consensus 526 L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp EECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred EECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 6666666664444333343 366666666666553
No 47
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.45 E-value=3.8e-14 Score=108.87 Aligned_cols=93 Identities=27% Similarity=0.294 Sum_probs=85.6
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+.|+|++|+++...+..|..+++|+.
T Consensus 51 ~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (193)
T 2wfh_A 51 SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130 (193)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence 46889999999999999888889999999999999999999888889999999999999999999766667899999999
Q ss_pred eecccccCCCCCC
Q 047563 104 FNVSYNNLSGLIP 116 (222)
Q Consensus 104 L~l~~N~l~~~~p 116 (222)
|++++|++.+...
T Consensus 131 L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 131 LAIGANPLYCDCN 143 (193)
T ss_dssp EECCSSCEECSGG
T ss_pred EEeCCCCeecCCc
Confidence 9999999987653
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=3.6e-13 Score=111.57 Aligned_cols=110 Identities=20% Similarity=0.278 Sum_probs=97.0
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+.+|..+..+++|+.|
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 3889999999999999 78888999999999999999998 466678899999999999999988999999999999999
Q ss_pred ecccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c 136 (222)
++++|.+.+.+|.. ..+++|+.+++.+|+...
T Consensus 259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred ECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 99999888888765 678889999999987654
No 49
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.44 E-value=1.8e-13 Score=125.41 Aligned_cols=110 Identities=34% Similarity=0.492 Sum_probs=62.6
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 105 (222)
+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555666666
Q ss_pred cccccCCCCCCCC-CCCCCcCcccccCccCC
Q 047563 106 VSYNNLSGLIPDK-GQYSTFDETSYRGNLYL 135 (222)
Q Consensus 106 l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~ 135 (222)
+++|.+++.+|.. ..+++|+.+++.+|++.
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 6666655555443 44555666666666544
No 50
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.43 E-value=3e-13 Score=116.13 Aligned_cols=114 Identities=21% Similarity=0.224 Sum_probs=104.7
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 105 (222)
.++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++.+..|..+..+++|+.|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 36899999999999999999999999999999999999988899999999999999999999988899999999999999
Q ss_pred cccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563 106 VSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT 139 (222)
Q Consensus 106 l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~ 139 (222)
+++|.+++..|.. ..+++|+.+++.+|.+...++
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCH
Confidence 9999999987765 778999999999998765443
No 51
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=8.7e-14 Score=102.02 Aligned_cols=105 Identities=18% Similarity=0.173 Sum_probs=91.1
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCc-CchhhhcCcccC
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ-IPAQLIELNFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~ 102 (222)
..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++. .+..+..+++|+
T Consensus 39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 4689999999999999966 7789999999999999999977888888899999999999999963 347889999999
Q ss_pred ceecccccCCCCCC---C-CCCCCCcCccccc
Q 047563 103 NFNVSYNNLSGLIP---D-KGQYSTFDETSYR 130 (222)
Q Consensus 103 ~L~l~~N~l~~~~p---~-~~~l~~l~~l~l~ 130 (222)
.|++++|.+++.++ . ...+++|+.+++.
T Consensus 117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999999998876 2 3567778777654
No 52
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.43 E-value=4.9e-13 Score=115.75 Aligned_cols=111 Identities=23% Similarity=0.207 Sum_probs=99.9
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
.+|+.|++++|.++...+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++.+..|..+..+++|+.|++
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 37888889999999655578899999999999999999888888999999999999999999888999999999999999
Q ss_pred ccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 107 SYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
++|.+++.++.. ..+++|+.+++.+|++.|.
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999999987765 6788999999999999885
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.42 E-value=2.7e-13 Score=110.82 Aligned_cols=115 Identities=22% Similarity=0.286 Sum_probs=98.0
Q ss_pred CCCCcccEEEeecCCCCCCCC-hhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCC-cCchhhhcCccc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVP-SEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG-QIPAQLIELNFL 101 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L 101 (222)
..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+ ..|..+..+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 358899999999999986655 578899999999999999988888889999999999999999886 478888899999
Q ss_pred CceecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563 102 SNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP 138 (222)
Q Consensus 102 ~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~ 138 (222)
+.|++++|.+++..|.. ..+++|+.+++.+|.+...+
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 99999999999887665 67888999999998865543
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=4.9e-13 Score=119.20 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=88.5
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..|..|+.+++|+.|++++|.+++..+..|..+++|+.|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 46788888888888887777788888888888888888887777778888888888888888885555556788888888
Q ss_pred ecccccCCCCCCCC-CCCCCcCcccccCccCC
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYL 135 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~ 135 (222)
++++|.+++.+|.. ..+++|+.+++.+|.+.
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 88888888877754 66778888888877654
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.41 E-value=4.1e-13 Score=108.22 Aligned_cols=109 Identities=18% Similarity=0.211 Sum_probs=55.9
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++.+..+..+..+++|+.|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence 34555555555555554444455555555555555555554444555555555555555555554433345555555555
Q ss_pred ecccccCCCCC-CCC-CCCCCcCcccccCcc
Q 047563 105 NVSYNNLSGLI-PDK-GQYSTFDETSYRGNL 133 (222)
Q Consensus 105 ~l~~N~l~~~~-p~~-~~l~~l~~l~l~~n~ 133 (222)
++++|.+++.. |.. ..+++|+.+++.+|.
T Consensus 130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 55555554421 222 344555555555554
No 56
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=4.1e-13 Score=101.30 Aligned_cols=110 Identities=17% Similarity=0.115 Sum_probs=89.0
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++.+|+.|++++|.++. +|......++|+.|++++|.+++. ..+..+++|+.|++++|++++..+..+..+++|+.|
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 47899999999999994 455333344999999999999854 678899999999999999996655666899999999
Q ss_pred ecccccCCCCCC--CCCCCCCcCcccccCccCCCC
Q 047563 105 NVSYNNLSGLIP--DKGQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 105 ~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~~~c~ 137 (222)
++++|.++..++ ....+++|+.+++.+|++...
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~ 128 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc
Confidence 999999976654 346788899999999986543
No 57
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.41 E-value=8.1e-13 Score=111.58 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=86.8
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
.+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|+++...+..+..+++|+.|
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 46788888888888887777778888888888888888887777778888888888888888884444446778888888
Q ss_pred ecccccCCCCCCCC-CCCCCcCcccccCccCC
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYL 135 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~ 135 (222)
++++|.+++.++.. ..+++|+.+++.+|.+.
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 88888888777654 66777888888777654
No 58
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=8.5e-13 Score=101.34 Aligned_cols=106 Identities=19% Similarity=0.318 Sum_probs=50.5
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCc-CCCcCchhhhcCcccCc
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR-LSGQIPAQLIELNFLSN 103 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~ 103 (222)
.+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+ +. .+| .+..+++|+.
T Consensus 86 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKS 163 (197)
T ss_dssp TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCE
T ss_pred cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCE
Confidence 34455555555555554444444555555555555555544444444555555555555554 33 333 3444555555
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNL 133 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~ 133 (222)
|++++|.+++.. ....+++|+.+++.+|+
T Consensus 164 L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 164 LNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 555555554432 22344445555554444
No 59
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=4.9e-13 Score=121.83 Aligned_cols=110 Identities=28% Similarity=0.304 Sum_probs=99.6
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..|..+++|+.|+|++|+|+ .+|..+..+++|+.
T Consensus 221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 45789999999999999 77777779999999999999999 88999999999999999999999 78999999999999
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c 136 (222)
|+|++|.++.+++....+++|+.|++.+|++..
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 999999999776666889999999999998754
No 60
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=6.9e-13 Score=100.05 Aligned_cols=94 Identities=23% Similarity=0.254 Sum_probs=84.8
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence 46889999999999999777777899999999999999999777778899999999999999999766666788999999
Q ss_pred eecccccCCCCCCC
Q 047563 104 FNVSYNNLSGLIPD 117 (222)
Q Consensus 104 L~l~~N~l~~~~p~ 117 (222)
|++++|++.+.+|.
T Consensus 129 L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 129 IWLHTNPWDCSCPR 142 (177)
T ss_dssp EECCSSCBCCCHHH
T ss_pred EEecCCCeeccCcc
Confidence 99999999987653
No 61
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.40 E-value=6.9e-13 Score=114.81 Aligned_cols=111 Identities=19% Similarity=0.244 Sum_probs=72.0
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++++|+.|+|++|.+++..|..|.++++|+.|++++|.++...+..|..+++|+.|++++|++.+..|..+..+++|+.
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 34666677777777766666666666777777777777666555555666677777777777766666666666666777
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCccC
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLY 134 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~ 134 (222)
|++++|.+++..+.. ..+++|+.+++.+|.+
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 777666666655543 4555666666666554
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.40 E-value=6.9e-13 Score=106.85 Aligned_cols=110 Identities=23% Similarity=0.202 Sum_probs=100.0
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
+.++.|++++|.+++..+..|.++++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47999999999999887778999999999999999999777788999999999999999999888888999999999999
Q ss_pred ccccCCCCCCC-CCCCCCcCcccccCccCCC
Q 047563 107 SYNNLSGLIPD-KGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 107 ~~N~l~~~~p~-~~~l~~l~~l~l~~n~~~c 136 (222)
++|.+.+..+. ...+++|+.+++.+|.+..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccce
Confidence 99999988774 4778999999999998654
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.40 E-value=5.4e-13 Score=118.63 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=52.4
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
+.++.|+|++|.+++..+..|.++++|+.|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|+.|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 34555555555555444444555555555555555554444444555555555555555555444444555555555555
Q ss_pred ccccCCCCCCCC-CCCCCcCcccccCcc
Q 047563 107 SYNNLSGLIPDK-GQYSTFDETSYRGNL 133 (222)
Q Consensus 107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~ 133 (222)
++|.+++.++.. ..+++|+.+++.+|.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 139 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNF 139 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCc
Confidence 555554444222 344444444444444
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=109.53 Aligned_cols=109 Identities=25% Similarity=0.170 Sum_probs=87.1
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
-.++|+.|++++|.+++..+..|.++++|+.|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|+.|
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 34578888888888887666678888888888888888887777788888888888888888886555557888888888
Q ss_pred ecccccCCCCCC--CCCCCCCcCcccccCcc
Q 047563 105 NVSYNNLSGLIP--DKGQYSTFDETSYRGNL 133 (222)
Q Consensus 105 ~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~ 133 (222)
++++|.+++.++ ....+++|+.+++.+|.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence 888888887665 23667888888888774
No 65
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.39 E-value=1.4e-12 Score=107.67 Aligned_cols=112 Identities=15% Similarity=0.170 Sum_probs=88.5
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++++|+.|++++|.++ .+|..+. ++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.
T Consensus 168 ~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 168 QGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244 (330)
T ss_dssp GGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred cCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence 35788888888888888 4555443 78888888888888777788888888888888888888777777888888888
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCCCCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCP 138 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~ 138 (222)
|++++|.++..+.....+++|+.+++.+|++...+
T Consensus 245 L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 245 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp EECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred EECCCCcCccCChhhccCCCcCEEECCCCcCCccC
Confidence 88888888866555567788888888888765443
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.38 E-value=1.1e-12 Score=115.29 Aligned_cols=108 Identities=23% Similarity=0.190 Sum_probs=80.1
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 105 (222)
.+.|+.|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+.|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 35777888888888777777777788888888888887766677777788888888888888766666677778888888
Q ss_pred cccccCCCC--CCCCCCCCCcCcccccCcc
Q 047563 106 VSYNNLSGL--IPDKGQYSTFDETSYRGNL 133 (222)
Q Consensus 106 l~~N~l~~~--~p~~~~l~~l~~l~l~~n~ 133 (222)
+++|.+++. ++....+++|+.+++.+|.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCc
Confidence 888877753 2233566777777777665
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=4.3e-13 Score=116.87 Aligned_cols=110 Identities=18% Similarity=0.136 Sum_probs=73.2
Q ss_pred CCCcccEEEeecCCCCCCCChhcc-CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIG-DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
++++|+.|+|++|.+++..|..+. .+++|+.|++++|.+++..+ ...+++|+.|+|++|++++.. ..+..+++|+.
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~ 218 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTW 218 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSE
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC-HhHcCCCCccE
Confidence 355666666666666655555554 45666666666666654322 224677777777777777543 34777888888
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCCCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~ 137 (222)
|++++|.+++.++....+++|+.+++.+|++.|+
T Consensus 219 L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp EECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred EEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 8888888887666556677888888888887764
No 68
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.37 E-value=2.1e-12 Score=112.88 Aligned_cols=113 Identities=24% Similarity=0.321 Sum_probs=63.4
Q ss_pred CCCCcccEEEeecCCCCC--CCChhccCCcCCCeEEccCCcCCCCcCc-cCCCCCCCCeEEccCCcCCC-----------
Q 047563 24 SNLNYMVGLDLSCNQLTG--NVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNNRLSG----------- 89 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~----------- 89 (222)
.++++|+.|++++|.+++ ..|..+..+++|+.|++++|.+++.+|. .+..+++|+.|++++|++++
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~ 424 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIK 424 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCC
T ss_pred ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCC
Confidence 356677777777777775 3445566777777777777777653443 35555555555555555543
Q ss_pred ----------cCchhhhcCcccCceecccccCCCCCCC-CCCCCCcCcccccCccCCC
Q 047563 90 ----------QIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 90 ----------~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~l~~n~~~c 136 (222)
.+|..+..+++|+.|++++|+++..++. ...+++|+.+++.+|++.|
T Consensus 425 ~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 425 VLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp EEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 3444444555555555555555544333 2344455555555555544
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.37 E-value=1.3e-12 Score=112.50 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=65.5
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
++++.|+|++|.+++..|..|.++++|+.|++++|.+++..|..|.++++|+.|+|++|+++...+..+..+++|+.|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 46667777777777666666667777777777777776666666666777777777777766555555666666777777
Q ss_pred ccccCCCCCCCC-CCCCCcCccccc
Q 047563 107 SYNNLSGLIPDK-GQYSTFDETSYR 130 (222)
Q Consensus 107 ~~N~l~~~~p~~-~~l~~l~~l~l~ 130 (222)
++|.++..++.. ..+++|+.+++.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCC
Confidence 766666554422 333344444333
No 70
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.37 E-value=1.1e-12 Score=116.63 Aligned_cols=106 Identities=16% Similarity=0.093 Sum_probs=49.1
Q ss_pred cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563 28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107 (222)
Q Consensus 28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 107 (222)
.++.|++++|.+++..|..|.++++|+.|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+.|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 44444555554444444444444445555554444444444444444444444444444444444444444444444444
Q ss_pred cccCCCCCCCC-CCCCCcCcccccCcc
Q 047563 108 YNNLSGLIPDK-GQYSTFDETSYRGNL 133 (222)
Q Consensus 108 ~N~l~~~~p~~-~~l~~l~~l~l~~n~ 133 (222)
+|.+++..+.. ..+++|+.+++.+|.
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~ 140 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNH 140 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred ccCcccCCcchhccCCcccEEECCCCc
Confidence 44444432222 334444444444443
No 71
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=1.1e-12 Score=116.26 Aligned_cols=107 Identities=22% Similarity=0.249 Sum_probs=88.7
Q ss_pred cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563 28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107 (222)
Q Consensus 28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 107 (222)
.|+.|+|++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57889999999985 565 888899999999999988 778888899999999999999985 66 78888999999999
Q ss_pred cccCCCCC-CC-CCCCCCcCcccccCccCCCCCC
Q 047563 108 YNNLSGLI-PD-KGQYSTFDETSYRGNLYLSCPT 139 (222)
Q Consensus 108 ~N~l~~~~-p~-~~~l~~l~~l~l~~n~~~c~~~ 139 (222)
+|.+++.+ |. ...+++|+.+++.+|++...++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99998885 44 3778888999999988654443
No 72
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.37 E-value=5.2e-13 Score=119.91 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=77.3
Q ss_pred CCCCcccEEEeecCCCCCC-----------------CChhcc--CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccC
Q 047563 24 SNLNYMVGLDLSCNQLTGN-----------------VPSEIG--DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSN 84 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 84 (222)
.++++|+.|+|++|.+++. +|..+. ++++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 3567777777777777764 777777 777777777777777777777777777777777777
Q ss_pred Cc-CCC-cCchhhhcC------cccCceecccccCCCCCC--CCCCCCCcCcccccCccCC
Q 047563 85 NR-LSG-QIPAQLIEL------NFLSNFNVSYNNLSGLIP--DKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 85 N~-l~~-~~p~~~~~l------~~L~~L~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~~~ 135 (222)
|+ +++ .+|..+..+ ++|+.|++++|.++..++ ....+++|+.+++.+|.+.
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc
Confidence 77 776 666666655 667777777777663332 2355666666666666543
No 73
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=3e-13 Score=102.04 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=89.7
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCch--hhhcCcccCce
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA--QLIELNFLSNF 104 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L 104 (222)
++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++. .+|. .+..+++|+.|
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 3999999999999965 67899999999999999999665566789999999999999997 5665 78899999999
Q ss_pred ecccccCCCCCCC----CCCCCCcCcccccCcc
Q 047563 105 NVSYNNLSGLIPD----KGQYSTFDETSYRGNL 133 (222)
Q Consensus 105 ~l~~N~l~~~~p~----~~~l~~l~~l~l~~n~ 133 (222)
++++|+++..++. ...++.|+.+++.+|.
T Consensus 119 ~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 119 CILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999876553 4667888888887775
No 74
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.36 E-value=1.6e-12 Score=115.62 Aligned_cols=113 Identities=18% Similarity=0.113 Sum_probs=103.0
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++++|++|+|++|.+++..|..|.++++|+.|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+.
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 57899999999999999888999999999999999999999888999999999999999999999776788999999999
Q ss_pred eecccccCCCCC-CCCCCCCCcCcccccCccCCC
Q 047563 104 FNVSYNNLSGLI-PDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 104 L~l~~N~l~~~~-p~~~~l~~l~~l~l~~n~~~c 136 (222)
|++++|.+++.. |....+++|+.+++.+|.+..
T Consensus 134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred EECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 999999999854 555568999999999998654
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.36 E-value=1.7e-12 Score=116.99 Aligned_cols=110 Identities=23% Similarity=0.263 Sum_probs=71.1
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++++|+.|+|++|.+++..|..|.++++|+.|++++|.+++..+..|..+++|++|++++|++.+..|..+..+++|+.|
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence 45666666666666666666666666666777776666664444456666677777777776665555666666677777
Q ss_pred ecccccCCCCCCCC-CCCCCcCcccccCccC
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLY 134 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~ 134 (222)
++++|.+++.++.. ..+++|+.+++.+|.+
T Consensus 127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp ECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred ECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 77777666665543 4566666666666653
No 76
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=1.1e-12 Score=116.27 Aligned_cols=101 Identities=27% Similarity=0.318 Sum_probs=89.9
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcC-chhhhcCcccC
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI-PAQLIELNFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~ 102 (222)
.++++|+.|+|++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|+|++|++++.. |..+..+++|+
T Consensus 460 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 460 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence 56889999999999999 789999999999999999999995 67 8999999999999999999776 99999999999
Q ss_pred ceecccccCCCCCCCCC----CCCCcCcc
Q 047563 103 NFNVSYNNLSGLIPDKG----QYSTFDET 127 (222)
Q Consensus 103 ~L~l~~N~l~~~~p~~~----~l~~l~~l 127 (222)
.|++++|++++.+|... .+++|+.+
T Consensus 537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 537 LLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred EEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 99999999999887652 25566555
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.36 E-value=2.4e-12 Score=113.73 Aligned_cols=110 Identities=20% Similarity=0.199 Sum_probs=64.1
Q ss_pred CCCCcccEEEeecCCCCCCC--ChhccCCcCCCeEEccCCcCCCCcCc-cCCCCCCCCeEEccCCcCCCcCchhhhcCcc
Q 047563 24 SNLNYMVGLDLSCNQLTGNV--PSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNNRLSGQIPAQLIELNF 100 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 100 (222)
.++++|+.|++++|.+++.. |..+..+++|+.|++++|.+++.+|. .+..+++|+.|++++|++++..|..+. ++
T Consensus 374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~ 451 (562)
T 3a79_B 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK 451 (562)
T ss_dssp CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--Cc
Confidence 45778888888888887532 35577778888888888887763443 466666666666666665543333221 34
Q ss_pred cCceecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563 101 LSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 101 L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~ 135 (222)
|+.|++++|.++.+++....+++|+.+++.+|.+.
T Consensus 452 L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC
Confidence 55555555555544333344445555555555443
No 78
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=6.4e-13 Score=110.49 Aligned_cols=92 Identities=20% Similarity=0.174 Sum_probs=82.1
Q ss_pred CCCCcccEEEeec-CCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563 24 SNLNYMVGLDLSC-NQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 102 (222)
..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..+..+..++ |+
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~ 106 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQ 106 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CC
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ce
Confidence 3467899999996 999988889999999999999999999998899999999999999999999976666666665 99
Q ss_pred ceecccccCCCCCC
Q 047563 103 NFNVSYNNLSGLIP 116 (222)
Q Consensus 103 ~L~l~~N~l~~~~p 116 (222)
.|++.+|++.+.+.
T Consensus 107 ~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 107 ELVLSGNPLHCSCA 120 (347)
T ss_dssp EEECCSSCCCCCGG
T ss_pred EEEeeCCCccCCCc
Confidence 99999999987653
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.36 E-value=3.4e-13 Score=110.82 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=73.0
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCC-----cCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCc--Cchhh-
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDL-----QKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ--IPAQL- 95 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~- 95 (222)
..+++|+.|+|++|.+++. |..+..+ ++|+.|++++|.+++..|..|..+++|+.|++++|++.+. .|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 4567777777777777755 6655555 6777777777777766667777777777777777776543 23333
Q ss_pred -hcCcccCceecccccCCCCCC---CC-CCCCCcCcccccCccCCC
Q 047563 96 -IELNFLSNFNVSYNNLSGLIP---DK-GQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 96 -~~l~~L~~L~l~~N~l~~~~p---~~-~~l~~l~~l~l~~n~~~c 136 (222)
..+++|+.|++++|.+++... .. ..+++|+.+++++|.+..
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 566777777777777763221 11 245677777777776544
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.35 E-value=2.4e-12 Score=118.99 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=60.6
Q ss_pred CCCcccEEEeecCCCCCCC-ChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchh--hhcCccc
Q 047563 25 NLNYMVGLDLSCNQLTGNV-PSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQ--LIELNFL 101 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L 101 (222)
++++|+.|+|++|...+.+ |..|.++++|+.|++++|.+++..|..|.++++|++|+|++|++++..|.. +..+++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 4555555555555333333 455555666666666666655555555666666666666666655444433 5555666
Q ss_pred CceecccccCCCCCCC--CCCCCCcCcccccCccC
Q 047563 102 SNFNVSYNNLSGLIPD--KGQYSTFDETSYRGNLY 134 (222)
Q Consensus 102 ~~L~l~~N~l~~~~p~--~~~l~~l~~l~l~~n~~ 134 (222)
+.|++++|.+++..+. ...+++|+.+++.+|.+
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 6666666665554432 24555566666655553
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.35 E-value=2.3e-12 Score=101.68 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=51.0
Q ss_pred CCCcccEEEeecCC-CCCCCChhccCCcCCCeEEccC-CcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563 25 NLNYMVGLDLSCNQ-LTGNVPSEIGDLQKIRVLNLSH-NCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS 102 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 102 (222)
++++|+.|++++|. ++...+..|.++++|+.|++++ |.+++..+..|..+++|+.|++++|++++ +|. +..+++|+
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~ 130 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD 130 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence 34455555555553 4444444455555555555554 55543333444555555555555555542 333 44444444
Q ss_pred ---ceecccc-cCCCCCCCC-CCCCCcC-cccccCccC
Q 047563 103 ---NFNVSYN-NLSGLIPDK-GQYSTFD-ETSYRGNLY 134 (222)
Q Consensus 103 ---~L~l~~N-~l~~~~p~~-~~l~~l~-~l~l~~n~~ 134 (222)
.|++++| .+++.++.. ..+++|+ .+++.+|.+
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 4555554 444444332 3344444 454444443
No 82
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.34 E-value=2.6e-12 Score=110.34 Aligned_cols=111 Identities=18% Similarity=0.113 Sum_probs=53.5
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++++|+.|+|++|.++...+..|.++++|+.|++++|.++...+..|..+++|+.|++++|++....+..|..+++|+.|
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 34445555555555544444444455555555555555543333444455555555555555544334444455555555
Q ss_pred ecccc-cCCCCCCCC-CCCCCcCcccccCccCC
Q 047563 105 NVSYN-NLSGLIPDK-GQYSTFDETSYRGNLYL 135 (222)
Q Consensus 105 ~l~~N-~l~~~~p~~-~~l~~l~~l~l~~n~~~ 135 (222)
++++| .+....+.. ..+++|+.+++.+|.+.
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 55542 222222222 44556666666666544
No 83
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.34 E-value=2.5e-12 Score=106.37 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=56.5
Q ss_pred cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563 28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107 (222)
Q Consensus 28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 107 (222)
+|+.|++++|.+++ +|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|+++
T Consensus 173 ~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 173 KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 55555666665553 333322 455555555555555444555555555555555555555444455555555555555
Q ss_pred cccCCCCCCCCCCCCCcCcccccCccCC
Q 047563 108 YNNLSGLIPDKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 108 ~N~l~~~~p~~~~l~~l~~l~l~~n~~~ 135 (222)
+|.++..++....+++|+.+++.+|++.
T Consensus 250 ~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 250 NNKLSRVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp SSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred CCcCeecChhhhcCccCCEEECCCCCCC
Confidence 5555544333344555555555555543
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=114.71 Aligned_cols=105 Identities=27% Similarity=0.305 Sum_probs=73.7
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|++|++++|+++ .+|.. .+++|+.|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57777777777777666667777777777777777777666777777777777777777777 45554 6677777777
Q ss_pred ccccCCCC-CCCC-CCCCCcCcccccCccC
Q 047563 107 SYNNLSGL-IPDK-GQYSTFDETSYRGNLY 134 (222)
Q Consensus 107 ~~N~l~~~-~p~~-~~l~~l~~l~l~~n~~ 134 (222)
++|.+++. .|.. +.+++|+.+++.+|.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred cCCccccccchhhhccCCcceEEEecCccc
Confidence 77777763 3332 5666777777666654
No 85
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.33 E-value=4.3e-12 Score=113.98 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=66.2
Q ss_pred CCCcccEEEeecCCCCCCCCh-hccCC-------cCCCeEEccCCcCCCCcCccCC--CCCCCCeEEccCCcCCCcCchh
Q 047563 25 NLNYMVGLDLSCNQLTGNVPS-EIGDL-------QKIRVLNLSHNCLSGSIPRSFS--NLKMIESLDLSNNRLSGQIPAQ 94 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~-~~~~l-------~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~ 94 (222)
.+++|+.|+|++|.++ .+|. .+... ++|+.|++++|.++ .+|..+. .+++|+.|++++|++++ +|..
T Consensus 455 ~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~ 531 (636)
T 4eco_A 455 TGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531 (636)
T ss_dssp TTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred cCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh
Confidence 3566777777777776 3333 22222 26677777777766 5555554 66677777777777764 6666
Q ss_pred hhcCcccCceec------ccccCCCCCCCC-CCCCCcCcccccCccC
Q 047563 95 LIELNFLSNFNV------SYNNLSGLIPDK-GQYSTFDETSYRGNLY 134 (222)
Q Consensus 95 ~~~l~~L~~L~l------~~N~l~~~~p~~-~~l~~l~~l~l~~n~~ 134 (222)
+..+++|+.|++ ++|.+.+.+|.. ..+++|+.+++.+|.+
T Consensus 532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 666667777766 345555555544 5566666666666665
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.33 E-value=1.8e-12 Score=102.37 Aligned_cols=109 Identities=20% Similarity=0.178 Sum_probs=95.5
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCc-CCCCcCccCCCCCCCCeEEccC-CcCCCcCchhhhcCcccCc
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNC-LSGSIPRSFSNLKMIESLDLSN-NRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~ 103 (222)
.+.++.|++++|.+++..+..|..+++|+.|++++|. ++...+..|..+++|+.|++++ |++++..+..|..+++|+.
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4589999999999998778789999999999999997 8866677899999999999998 9999777788999999999
Q ss_pred eecccccCCCCCCCCCCCCCcC---cccccCc-cCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFD---ETSYRGN-LYL 135 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~---~l~l~~n-~~~ 135 (222)
|++++|.+++.+ ....+++++ .+++.+| .+.
T Consensus 110 L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 110 LGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp EEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCC
T ss_pred EeCCCCCCcccc-ccccccccccccEEECCCCcchh
Confidence 999999999854 466677777 8999998 543
No 87
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.33 E-value=2.3e-12 Score=108.79 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=103.2
Q ss_pred CCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563 23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS 102 (222)
Q Consensus 23 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 102 (222)
...+++++.|++++|.++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++.+..|..+..+++|+
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 34578999999999999966666688999999999999999977778999999999999999999988888899999999
Q ss_pred ceecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563 103 NFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP 138 (222)
Q Consensus 103 ~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~ 138 (222)
.|++++|.++..++.. ..+++|+.+++.+|.+...+
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 9999999999887775 67899999999999865443
No 88
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.32 E-value=7.4e-12 Score=103.35 Aligned_cols=113 Identities=20% Similarity=0.361 Sum_probs=90.5
Q ss_pred CCCCcccEEEeecCCCCC--CCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCccc
Q 047563 24 SNLNYMVGLDLSCNQLTG--NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFL 101 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 101 (222)
.++++|+.|++++|.++. ..+..+..+++|+.|++++|.++ .+|..+. ++|+.|++++|++++..|..+..+++|
T Consensus 142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL 218 (330)
T ss_dssp TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 457888999999998863 66777888889999999998887 4555443 788899999999887778888888899
Q ss_pred CceecccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563 102 SNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT 139 (222)
Q Consensus 102 ~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~ 139 (222)
+.|++++|.+++.++.. ..+++|+.+++.+|.+...+.
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 257 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257 (330)
T ss_dssp CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred CEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence 99999999888877654 667888888888888665444
No 89
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.32 E-value=1.8e-12 Score=106.66 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=58.2
Q ss_pred CCcccEEEeecCCCCCCCChhcc-CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIG-DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
+++|+.|++++|.+++..+..+. .+++|+.|++++|.+++. |. ...+++|+.|++++|++++ +|..+..+++|+.|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L 219 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEE
Confidence 44555555555555544444332 445555555555555432 21 1235566666666666663 33345666666666
Q ss_pred ecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563 105 NVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c 136 (222)
++++|.+++.++....+++|+.+++.+|++.|
T Consensus 220 ~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp ECTTSCCCEECTTCCCCTTCCEEECTTCCCBH
T ss_pred ECcCCcccchhhHhhcCCCCCEEEccCCCccC
Confidence 66666666554444555666666666666654
No 90
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.32 E-value=1.9e-12 Score=107.96 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=74.0
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCc-hhhhcCcccC
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIP-AQLIELNFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~ 102 (222)
.++++|+.|++++|.+++..|..|.++++|+.|++++|.+++..+..|..+++|+.|++++|+++...+ ..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 456777777777777776666677777777777777777775444457777777777777777773332 3566677777
Q ss_pred ceecccc-cCCCCCCCC-CCCCCcCcccccCccCC
Q 047563 103 NFNVSYN-NLSGLIPDK-GQYSTFDETSYRGNLYL 135 (222)
Q Consensus 103 ~L~l~~N-~l~~~~p~~-~~l~~l~~l~l~~n~~~ 135 (222)
.|++++| .+....+.. ..+++|+.+++.+|.+.
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 7777776 355554433 45666666666666543
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.31 E-value=5.1e-12 Score=113.84 Aligned_cols=111 Identities=18% Similarity=0.193 Sum_probs=101.0
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
+.++.|+|++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|+++...+..|..+++|+.|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 68999999999999888888999999999999999999888999999999999999999999665567999999999999
Q ss_pred ccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 107 SYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
++|.+++.+|.. ..+++|+.+++.+|.+...
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 136 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCccccc
Confidence 999999888765 7889999999999976543
No 92
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=1.4e-12 Score=120.68 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=60.0
Q ss_pred CCCcccEEEeecCCCCC-----------------CCChhcc--CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCC
Q 047563 25 NLNYMVGLDLSCNQLTG-----------------NVPSEIG--DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN 85 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 85 (222)
++++|+.|+|++|.+++ .+|..++ ++++|+.|++++|.+.+.+|..|..+++|+.|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 45566666666666665 2555554 6666666666666665566666666666666666666
Q ss_pred c-CCC-cCchhhhcCc-------ccCceecccccCCCCCC--CCCCCCCcCcccccCccC
Q 047563 86 R-LSG-QIPAQLIELN-------FLSNFNVSYNNLSGLIP--DKGQYSTFDETSYRGNLY 134 (222)
Q Consensus 86 ~-l~~-~~p~~~~~l~-------~L~~L~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~~ 134 (222)
+ +++ .+|..+..++ +|+.|++++|.++.+++ ....+++|+.+++.+|.+
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc
Confidence 5 555 4555444443 55555555555552222 124444555555544443
No 93
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=3.3e-12 Score=113.78 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=105.1
Q ss_pred CCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563 23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS 102 (222)
Q Consensus 23 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 102 (222)
.-.++.++.+++++|.++...+..|..+++|+.|++++|.+++..|..|..+++|+.|+|++|.+++..|..|..+++|+
T Consensus 47 ~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp SGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 34568899999999999977777788999999999999999988888999999999999999999988888899999999
Q ss_pred ceecccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563 103 NFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT 139 (222)
Q Consensus 103 ~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~ 139 (222)
.|++++|.+++.++.. ..+++|+.+++.+|.+...++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence 9999999999988876 789999999999998655443
No 94
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.30 E-value=2.8e-12 Score=112.59 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=90.4
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCC-cCchhhhcCcccC
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG-QIPAQLIELNFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~ 102 (222)
.++++|++|++++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|++|++++|++++ ..|..+..+++|+
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 568899999999999998888889999999999999999987777778899999999999999875 3466788888888
Q ss_pred ceecccccC-CCCCCC-CCCCCCcCcccccCccCC
Q 047563 103 NFNVSYNNL-SGLIPD-KGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 103 ~L~l~~N~l-~~~~p~-~~~l~~l~~l~l~~n~~~ 135 (222)
.|++++|.+ ...++. ...+++|+.+++.+|.+.
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 899888874 434333 366777888888777654
No 95
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.30 E-value=6.2e-12 Score=104.30 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=72.0
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|++++|.+++..+ +..+++|+.|++++|.++.. ..+..+++|+.|++++|++++. ..+..+++|+.
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 291 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS 291 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE
Confidence 456777777777777774333 66777777777777777642 3466777777777777777643 34666777777
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~ 137 (222)
|++++|.+++..+.. ..+++|+.+++.+|++...
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 777777776665543 4566777777777765443
No 96
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.30 E-value=6.9e-12 Score=110.43 Aligned_cols=106 Identities=23% Similarity=0.220 Sum_probs=51.2
Q ss_pred cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563 28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 107 (222)
Q Consensus 28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 107 (222)
.++.|++++|.+++..+..|.++++|+.|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|+.|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 44555555555554444445555555555555555544444445555555555555555544444444455555555555
Q ss_pred cccCCCCCCC-CCCCCCcCcccccCcc
Q 047563 108 YNNLSGLIPD-KGQYSTFDETSYRGNL 133 (222)
Q Consensus 108 ~N~l~~~~p~-~~~l~~l~~l~l~~n~ 133 (222)
+|.+++.++. ...+++|+.+++.+|.
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~ 135 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNL 135 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSC
T ss_pred ccccccCCCccccccccccEEecCCCc
Confidence 5544444332 2344444444444443
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.29 E-value=6.1e-12 Score=103.29 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=92.2
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCC--cCccC--CCCCCCCeEEccCCcCCCc--Cc-hhhhcCc
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGS--IPRSF--SNLKMIESLDLSNNRLSGQ--IP-AQLIELN 99 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~--~p-~~~~~l~ 99 (222)
++|++|++++|.+++..|..|..+++|+.|++++|.+.+. .|..+ ..+++|+.|++++|++++. .+ ..+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 8999999999999988889999999999999999998755 33344 8899999999999999832 12 3445779
Q ss_pred ccCceecccccCCCCCCC--CCCCCCcCcccccCccCCCC
Q 047563 100 FLSNFNVSYNNLSGLIPD--KGQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 100 ~L~~L~l~~N~l~~~~p~--~~~l~~l~~l~l~~n~~~c~ 137 (222)
+|+.|++++|.+++.+|. ...+++|+.+++++|.+...
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 999999999999997743 35678999999999986643
No 98
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.29 E-value=4.5e-12 Score=112.00 Aligned_cols=107 Identities=25% Similarity=0.278 Sum_probs=89.9
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 105 (222)
.++++.|++++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|++|++++|+++ .+|.. .+++|+.|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 468999999999999877788999999999999999999878888999999999999999998 56655 788999999
Q ss_pred cccccCCCCC-CC-CCCCCCcCcccccCccCC
Q 047563 106 VSYNNLSGLI-PD-KGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 106 l~~N~l~~~~-p~-~~~l~~l~~l~l~~n~~~ 135 (222)
+++|.+++.. |. ...+++|+.+++++|.+.
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 9999988754 33 367888888888888754
No 99
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.29 E-value=9e-12 Score=102.95 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=54.9
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
+.++.|++++|.+++..|..|.++++|+.|++++|.+++..|..|..+++|+.|++++|++. .+|..+. ++|+.|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 45556666666666555555566666666666666665555555666666666666666555 3333222 44555555
Q ss_pred ccccCCCCCCCC-CCCCCcCcccccCcc
Q 047563 107 SYNNLSGLIPDK-GQYSTFDETSYRGNL 133 (222)
Q Consensus 107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~ 133 (222)
++|.+++.++.. ..+++|+.+++.+|.
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCc
Confidence 555554444332 334444444444444
No 100
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.28 E-value=4.8e-12 Score=103.84 Aligned_cols=102 Identities=25% Similarity=0.413 Sum_probs=47.6
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
.+++|+.|++++|.+++ .+. +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++ ++. +..+++|+.|
T Consensus 105 ~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTL 178 (308)
T ss_dssp TCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEE
T ss_pred CCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEE
Confidence 35555555555555553 222 4555555555555555543222 4444555555555555542 222 4444444444
Q ss_pred ecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563 105 NVSYNNLSGLIPDKGQYSTFDETSYRGNL 133 (222)
Q Consensus 105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~ 133 (222)
++++|.+++..+ ...+++|+.+++++|.
T Consensus 179 ~l~~n~l~~~~~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 179 KADDNKISDISP-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp ECCSSCCCCCGG-GGGCTTCCEEECTTSC
T ss_pred ECCCCccCcChh-hcCCCCCCEEEccCCc
Confidence 444444444332 2333444444444443
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.27 E-value=1.2e-11 Score=101.41 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=73.7
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCC--c--CccCCCCCCCCeEEccCCcCCCcCch----hhhc
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGS--I--PRSFSNLKMIESLDLSNNRLSGQIPA----QLIE 97 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~ 97 (222)
+++|+.|+|++|.+++..|..|..+++|+.|++++|.+.+. . +..+..+++|+.|++++|+++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 56677777777777666666677777777777777766532 1 122356667777777777775 3333 2456
Q ss_pred CcccCceecccccCCCCCCCC-CCC---CCcCcccccCccCCCCC
Q 047563 98 LNFLSNFNVSYNNLSGLIPDK-GQY---STFDETSYRGNLYLSCP 138 (222)
Q Consensus 98 l~~L~~L~l~~N~l~~~~p~~-~~l---~~l~~l~l~~n~~~c~~ 138 (222)
+++|+.|++++|.+++..|.. ..+ ++|+.+++.+|.+...+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence 788888888888888875433 333 57888888888766433
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=2.2e-11 Score=99.19 Aligned_cols=82 Identities=29% Similarity=0.428 Sum_probs=35.6
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 105 (222)
+++|+.|++++|.+++..+ +..+++|+.|++++|.+++ +| .+..+++|+.|++++|++++ + ..+..+++|+.|+
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLY 140 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEE
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEE
Confidence 4455555555555553222 4444455555555544442 11 24444444444444444442 1 2233444444444
Q ss_pred cccccCCC
Q 047563 106 VSYNNLSG 113 (222)
Q Consensus 106 l~~N~l~~ 113 (222)
+++|.+++
T Consensus 141 l~~n~l~~ 148 (291)
T 1h6t_A 141 LGNNKITD 148 (291)
T ss_dssp CCSSCCCC
T ss_pred ccCCcCCc
Confidence 44444433
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=1e-11 Score=101.18 Aligned_cols=105 Identities=26% Similarity=0.373 Sum_probs=69.6
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|++++|.+++ .| .+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|+.
T Consensus 87 ~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 160 (291)
T 1h6t_A 87 ANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT 160 (291)
T ss_dssp TTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred ccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCE
Confidence 456777777777777774 33 367777777777777777643 3466677777777777777643 45666677777
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~ 135 (222)
|++++|.+++..+ ...+++|+.+++++|.+.
T Consensus 161 L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 161 LSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred EEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence 7777777766554 455666666666666543
No 104
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=4.9e-12 Score=117.11 Aligned_cols=109 Identities=19% Similarity=0.268 Sum_probs=90.4
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCc-CCC-CcCccCCCCC-------CCCeEEccCCcCCCcCch--
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNC-LSG-SIPRSFSNLK-------MIESLDLSNNRLSGQIPA-- 93 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~-- 93 (222)
++++|+.|+|++|.+.+.+|..+.++++|+.|++++|. +++ .+|..+..+. +|+.|++++|+++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 68899999999999999999999999999999999998 887 6776555444 8899999999888 7777
Q ss_pred hhhcCcccCceecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563 94 QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 94 ~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~ 135 (222)
.+..+++|+.|++++|.++ .+|....+++|+.+++.+|.+.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS
T ss_pred hhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc
Confidence 8888888888888888888 4455567777888888877755
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=2.5e-11 Score=97.45 Aligned_cols=107 Identities=24% Similarity=0.288 Sum_probs=57.1
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcC-------------------ccCCCCCCCCeEEccCC
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP-------------------RSFSNLKMIESLDLSNN 85 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-------------------~~~~~l~~L~~L~Ls~N 85 (222)
.+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ ..+..+++|+.|++++|
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNN 138 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTS
T ss_pred hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccccCcccEEEccCCccCCChhhcCcccccEEECCCC
Confidence 45666666777666664333 6666666666666666653211 12444555555555555
Q ss_pred cCCCcCchhhhcCcccCceecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563 86 RLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 86 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c 136 (222)
++++ ++ .+..+++|+.|++++|.+++. +....+++|+.+++.+|++.+
T Consensus 139 ~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 139 KLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred cCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 5553 22 345555555555555555554 333445555555555555443
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.25 E-value=5.2e-12 Score=103.94 Aligned_cols=110 Identities=17% Similarity=0.124 Sum_probs=74.3
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccC-CCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSF-SNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|+.|++++|++++. |. ...+++|+.
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~ 195 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKT 195 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCE
T ss_pred ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCE
Confidence 45667777777777776656666677777777777777776555554 3567777777777777643 32 224677777
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c 136 (222)
|++++|.+++.++....+++|+.+++++|.+..
T Consensus 196 L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred EECCCCcCCcchhhhcccCcccEEECcCCcccc
Confidence 777777777766665666777777777776554
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.25 E-value=9.9e-12 Score=101.88 Aligned_cols=112 Identities=12% Similarity=0.019 Sum_probs=60.3
Q ss_pred CCCcccEEEeecCCCCCCCC----hhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCc--C--chhhh
Q 047563 25 NLNYMVGLDLSCNQLTGNVP----SEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ--I--PAQLI 96 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~--p~~~~ 96 (222)
.+++|+.|+|++|.+++..+ ..+..+++|+.|++++|.+.+..|..|..+++|++|++++|++.+. + +..+.
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 45556666666666654333 2233455666666666666555555666666666666666665431 1 11124
Q ss_pred cCcccCceecccccCCCCCCC----CCCCCCcCcccccCccCCC
Q 047563 97 ELNFLSNFNVSYNNLSGLIPD----KGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 97 ~l~~L~~L~l~~N~l~~~~p~----~~~l~~l~~l~l~~n~~~c 136 (222)
.+++|+.|++++|.++...+. ...+++|+.+++++|.+..
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 555666666666666533221 1234566666666666543
No 108
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.25 E-value=2.7e-11 Score=99.31 Aligned_cols=102 Identities=25% Similarity=0.346 Sum_probs=47.6
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 105 (222)
+++|+.|++++|.+++ .+ .+..+++|+.|++++|.+++. +. +..+++|+.|++++|++++. +. +..+++|+.|+
T Consensus 84 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 84 LTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLS 157 (308)
T ss_dssp CCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEE
T ss_pred CCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEE
Confidence 4444444444444442 11 344444444444444444422 21 44455555555555555432 22 44555555555
Q ss_pred cccccCCCCCCCCCCCCCcCcccccCccC
Q 047563 106 VSYNNLSGLIPDKGQYSTFDETSYRGNLY 134 (222)
Q Consensus 106 l~~N~l~~~~p~~~~l~~l~~l~l~~n~~ 134 (222)
+++|.+++..+ ...+++|+.+++.+|.+
T Consensus 158 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 158 IGNAQVSDLTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp CCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred ccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence 55555554433 34455555555555543
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.23 E-value=2e-11 Score=109.07 Aligned_cols=105 Identities=24% Similarity=0.365 Sum_probs=63.5
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
.+++|+.|+|++|.+++ + +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+..| +..+++|+.|
T Consensus 107 ~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 45556666666666553 2 2355566666666666666533 445666666666666666664444 6666677777
Q ss_pred ecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563 105 NVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c 136 (222)
++++|.+++. +....+++|+.|++.+|++..
T Consensus 181 ~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 181 YLSKNHISDL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ECCSSCCCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred ECcCCCCCCC-hHHccCCCCCEEEccCCcCcC
Confidence 7777766664 344556667777777766443
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=2.7e-11 Score=97.28 Aligned_cols=102 Identities=21% Similarity=0.287 Sum_probs=73.0
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+++..+ +..+++|+.|++++|++++ +|.. .. ++|+.
T Consensus 38 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~ 110 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSR 110 (263)
T ss_dssp HHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCE
T ss_pred hhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccE
Confidence 45789999999999999 455 68899999999999999996555 8899999999999999885 3322 12 55555
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNL 133 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~ 133 (222)
|++++|.+++. +....+++|+.+++++|.
T Consensus 111 L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 111 LFLDNNELRDT-DSLIHLKNLEILSIRNNK 139 (263)
T ss_dssp EECCSSCCSBS-GGGTTCTTCCEEECTTSC
T ss_pred EEccCCccCCC-hhhcCcccccEEECCCCc
Confidence 55555555543 223344455555555544
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=5.1e-11 Score=106.41 Aligned_cols=105 Identities=27% Similarity=0.396 Sum_probs=67.8
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+.+ + ..+..+++|+.|+|++|++++. ..+..+++|+.
T Consensus 84 ~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 157 (605)
T 1m9s_A 84 TNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT 157 (605)
T ss_dssp GGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSE
T ss_pred ccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCE
Confidence 345566666666666653 22 45666666666666666663 2 3456667777777777777643 45667777777
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL 135 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~ 135 (222)
|++++|.+++.+| ...+++|+.|++.+|.+.
T Consensus 158 L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 158 LSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred EECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence 7777777777665 556777777777777654
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.16 E-value=6.2e-11 Score=102.42 Aligned_cols=103 Identities=27% Similarity=0.322 Sum_probs=50.3
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 345566666666666653322 4555555555555555553332 4445555555555555553332 344444555
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNL 133 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~ 133 (222)
|++++|.+++. +....+++|+.+++.+|+
T Consensus 336 L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 336 LFFYNNKVSDV-SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EECCSSCCCCC-GGGTTCTTCCEEECCSSC
T ss_pred eECCCCccCCc-hhhccCCCCCEEeCCCCc
Confidence 55555444443 222334444444444444
No 113
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.14 E-value=4.7e-11 Score=103.99 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=86.5
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCC-CCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFS-NLKMIESLDLSNNRLSGQIPAQLIELNFLS 102 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 102 (222)
..+++|+.|+|++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++. |. ...+++|+
T Consensus 117 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 194 (487)
T 3oja_A 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLK 194 (487)
T ss_dssp CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCC
T ss_pred cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCC
Confidence 3466778888888888877777777888888888888888877777665 678888888888888754 32 23578888
Q ss_pred ceecccccCCCCCCCCCCCCCcCcccccCccCCCCCC
Q 047563 103 NFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPT 139 (222)
Q Consensus 103 ~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~ 139 (222)
.|++++|.+++.+|....+++|+.+++.+|.+...|.
T Consensus 195 ~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 231 (487)
T 3oja_A 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (487)
T ss_dssp EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred EEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccch
Confidence 8888888888887776777888888888887654333
No 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.13 E-value=8.4e-11 Score=97.41 Aligned_cols=104 Identities=21% Similarity=0.354 Sum_probs=64.4
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++ + +.+..+++|+.
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~ 269 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKM 269 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCE
T ss_pred cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCE
Confidence 345666677777776664333 5666667777777776664333 6666677777777776663 2 34566666777
Q ss_pred eecccccCCCCCCCCCCCCCcCcccccCccC
Q 047563 104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLY 134 (222)
Q Consensus 104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~ 134 (222)
|++++|.+++. +....+++|+.+++.+|.+
T Consensus 270 L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 270 LNVGSNQISDI-SVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp EECCSSCCCCC-GGGGGCTTCSEEECCSSCC
T ss_pred EEccCCccCCC-hhhcCCCCCCEEECcCCcC
Confidence 77777766654 3334556666666666654
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.13 E-value=1.4e-10 Score=100.25 Aligned_cols=103 Identities=26% Similarity=0.461 Sum_probs=55.2
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
.+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|+.|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 34555556666665553332 5555556666666655553332 4555556666666665553322 4555556666
Q ss_pred ecccccCCCCCCCCCCCCCcCcccccCccC
Q 047563 105 NVSYNNLSGLIPDKGQYSTFDETSYRGNLY 134 (222)
Q Consensus 105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~ 134 (222)
++++|.+++..| ...+++|+.+++.+|.+
T Consensus 315 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 315 TLYFNNISDISP-VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp ECCSSCCSCCGG-GGGCTTCCEEECCSSCC
T ss_pred ECcCCcCCCchh-hccCccCCEeECCCCcc
Confidence 666665555544 33455555555555543
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=5.1e-13 Score=102.70 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=90.0
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
.+++|+.|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|+.|
T Consensus 46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL 120 (198)
T ss_dssp HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence 47889999999999985 66 7888999999999999998 677777778899999999999985 45 68888999999
Q ss_pred ecccccCCCCCC--CCCCCCCcCcccccCccCCCC
Q 047563 105 NVSYNNLSGLIP--DKGQYSTFDETSYRGNLYLSC 137 (222)
Q Consensus 105 ~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~~~c~ 137 (222)
++++|.++...+ ....+++|+.+++.+|++.+.
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 999999987543 336788899999999987554
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.09 E-value=2e-10 Score=104.67 Aligned_cols=111 Identities=21% Similarity=0.219 Sum_probs=80.0
Q ss_pred cccEEEeecCCCCC---------CCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcC
Q 047563 28 YMVGLDLSCNQLTG---------NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIEL 98 (222)
Q Consensus 28 ~L~~L~Ls~N~l~~---------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 98 (222)
.++.++|+.|.+.+ ..|..+..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|+++ .+|..+..+
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 44455555555543 44778899999999999999998 77777779999999999999999 889999999
Q ss_pred cccCceecccccCCCCCCCCCCCCCcCcccccCccCCCCCCC
Q 047563 99 NFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTI 140 (222)
Q Consensus 99 ~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~~ 140 (222)
++|+.|+|++|.++.++.....+++|+.|++.+|.+...|..
T Consensus 270 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~ 311 (727)
T 4b8c_D 270 SNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE 311 (727)
T ss_dssp TTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS
T ss_pred CCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh
Confidence 999999999999996655557899999999999987655443
No 118
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.09 E-value=3.3e-10 Score=94.39 Aligned_cols=108 Identities=16% Similarity=0.086 Sum_probs=84.0
Q ss_pred EEEEEECCcEeeeCCCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcC-ccCCCCCCCCe-EEccCCc
Q 047563 9 KVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP-RSFSNLKMIES-LDLSNNR 86 (222)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~Ls~N~ 86 (222)
++.+..++..++..+ -.++++.|+|++|.|+...+..|.++++|+.|++++|.+.+.+| ..|.++++++. +.++.|+
T Consensus 13 ~v~C~~~~Lt~iP~~-l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTCCSCCTT-CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCCCccCcC-cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 445555555544332 23689999999999996666789999999999999999865555 56888888765 6677899
Q ss_pred CCCcCchhhhcCcccCceecccccCCCCCCC
Q 047563 87 LSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117 (222)
Q Consensus 87 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 117 (222)
++...|+.|..+++|+.|++++|.++..++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred ccccCchhhhhccccccccccccccccCCch
Confidence 9977788889999999999999998876553
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.06 E-value=2.4e-10 Score=101.26 Aligned_cols=100 Identities=22% Similarity=0.212 Sum_probs=58.0
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCccc---
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFL--- 101 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--- 101 (222)
.+++|+.|+|++|.+++ +|. .+++|+.|++++|.+++ +|. |. ++|+.|++++|+|+ .+|. +.. +|
T Consensus 138 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~ 205 (571)
T 3cvr_A 138 LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHS 205 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC--------
T ss_pred cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcc
Confidence 45556666666666664 333 34566666666666664 444 43 66666666666666 4444 333 45
Q ss_pred ----CceecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563 102 ----SNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 102 ----~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c 136 (222)
+.|++++|.++.+++....+++|+.+++.+|++.+
T Consensus 206 ~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 206 EETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp --CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred cccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 66777777776654444556667777777776543
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.03 E-value=6.2e-10 Score=96.16 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=54.4
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
.+++|+.|++++|.+++. | +..+++|+.|++++|.+++. | +..+++|+.|++++|++++ +| +..+++|+.|
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L 132 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL 132 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence 345555566666655543 2 55555666666666655532 2 5555666666666666653 23 5555666666
Q ss_pred ecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563 105 NVSYNNLSGLIPDKGQYSTFDETSYRGNL 133 (222)
Q Consensus 105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~ 133 (222)
++++|.+++. ....++.|+.+++.+|.
T Consensus 133 ~l~~N~l~~l--~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 133 NCARNTLTEI--DVSHNTQLTELDCHLNK 159 (457)
T ss_dssp ECTTSCCSCC--CCTTCTTCCEEECTTCS
T ss_pred ECCCCcccee--ccccCCcCCEEECCCCC
Confidence 6666666554 13445556666665553
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.00 E-value=1.8e-09 Score=95.64 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=52.1
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
.+++|+.|+|++|.+++ +|. +.+ +|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. .+++|+.|
T Consensus 98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L 165 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVL 165 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEE
Confidence 34455555555555553 333 333 55555555555553 333 34556666666666653 343 34566666
Q ss_pred ecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563 105 NVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c 136 (222)
++++|.+++.++ .. ++|+.+++.+|.+..
T Consensus 166 ~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 166 SVRNNQLTFLPE-LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp ECCSSCCSCCCC-CC--TTCCEEECCSSCCSS
T ss_pred ECCCCCCCCcch-hh--CCCCEEECcCCCCCc
Confidence 666666666433 22 566666676666543
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.99 E-value=1.8e-09 Score=93.29 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=54.4
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 105 (222)
+++|+.|++++|.+++. | .+..+++|+.|++++|.+++. | +..+++|+.|++++|++++. | +..+++|+.|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 45556666666665543 3 355556666666666655532 2 55555666666666665532 2 45555666666
Q ss_pred cccccCCCCCCCCCCCCCcCcccccCccC
Q 047563 106 VSYNNLSGLIPDKGQYSTFDETSYRGNLY 134 (222)
Q Consensus 106 l~~N~l~~~~p~~~~l~~l~~l~l~~n~~ 134 (222)
+++|.+++. + ...+++|+.+++.+|.+
T Consensus 113 L~~N~l~~l-~-~~~l~~L~~L~l~~N~l 139 (457)
T 3bz5_A 113 CDTNKLTKL-D-VSQNPLLTYLNCARNTL 139 (457)
T ss_dssp CCSSCCSCC-C-CTTCTTCCEEECTTSCC
T ss_pred CCCCcCCee-c-CCCCCcCCEEECCCCcc
Confidence 666655553 2 34455555555555553
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=4.3e-12 Score=97.47 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=91.7
Q ss_pred CCcccEEEeecCCCCCCCCh------hccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCc
Q 047563 26 LNYMVGLDLSCNQLTGNVPS------EIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELN 99 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 99 (222)
...++.++++.+.+++..|. .+..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 45677778888888877776 89999999999999999985 66 8889999999999999999 6788888889
Q ss_pred ccCceecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563 100 FLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 100 ~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c 136 (222)
+|+.|++++|.+++.+ ....+++|+.+++.+|.+..
T Consensus 94 ~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 94 TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCC
T ss_pred cCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCc
Confidence 9999999999999853 44667889999999997543
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.88 E-value=2.1e-10 Score=95.95 Aligned_cols=89 Identities=25% Similarity=0.297 Sum_probs=48.9
Q ss_pred CcccEEEeecCCCCCCCC----hhccCCc-CCCeEEccCCcCCCCcCccCCCC-----CCCCeEEccCCcCCCcCchhhh
Q 047563 27 NYMVGLDLSCNQLTGNVP----SEIGDLQ-KIRVLNLSHNCLSGSIPRSFSNL-----KMIESLDLSNNRLSGQIPAQLI 96 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~ 96 (222)
++|+.|+|++|.++...+ ..+..++ +|+.|++++|.+++..+..+..+ ++|+.|++++|++++..+..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 346666666666664444 4555555 56666666666655444444443 5566666666666544444333
Q ss_pred cC-----cccCceecccccCCCCC
Q 047563 97 EL-----NFLSNFNVSYNNLSGLI 115 (222)
Q Consensus 97 ~l-----~~L~~L~l~~N~l~~~~ 115 (222)
.. ++|+.|++++|.+++..
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHHHhCCCCccEEECcCCcCCcHH
Confidence 32 55666666666655443
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.88 E-value=8e-11 Score=97.05 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=59.1
Q ss_pred CCcccEEEeecCCCCCC-CChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCC-cCCCc-CchhhhcCcccC
Q 047563 26 LNYMVGLDLSCNQLTGN-VPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN-RLSGQ-IPAQLIELNFLS 102 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~ 102 (222)
+++|+.|++++|.+++. .|..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .+++. ++..+..+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 55666666666666543 5555666666666666666665555555666666666666666 45431 344455566666
Q ss_pred ceecccc-cCCCC-CCC-CCCCC-CcCcccccCc
Q 047563 103 NFNVSYN-NLSGL-IPD-KGQYS-TFDETSYRGN 132 (222)
Q Consensus 103 ~L~l~~N-~l~~~-~p~-~~~l~-~l~~l~l~~n 132 (222)
.|++++| .+++. .+. ...++ +|+.+++.+|
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 6666666 55432 111 12334 4555555544
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.87 E-value=1.4e-10 Score=97.81 Aligned_cols=112 Identities=13% Similarity=0.203 Sum_probs=75.6
Q ss_pred CCCcccEEEeecCCCCC-----CCChhccCCcCCCeEEccCCcCC----CCcCccCCCCCCCCeEEccCCcCCCc----C
Q 047563 25 NLNYMVGLDLSCNQLTG-----NVPSEIGDLQKIRVLNLSHNCLS----GSIPRSFSNLKMIESLDLSNNRLSGQ----I 91 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~ 91 (222)
.+++|+.|++++|.++. ..|..+..+++|+.|++++|.++ ..+|..+..+++|+.|++++|++++. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 35677777777777762 23335667777888888888774 45666777777888888888887754 3
Q ss_pred chhhhc--CcccCceecccccCCC----CCCCC--CCCCCcCcccccCccCCC
Q 047563 92 PAQLIE--LNFLSNFNVSYNNLSG----LIPDK--GQYSTFDETSYRGNLYLS 136 (222)
Q Consensus 92 p~~~~~--l~~L~~L~l~~N~l~~----~~p~~--~~l~~l~~l~l~~n~~~c 136 (222)
|..+.. +++|+.|++++|.+++ ..|.. ..+++|+.+++.+|++..
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 455533 7778888888888776 23322 335777888888877554
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.87 E-value=6.9e-09 Score=92.89 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=49.7
Q ss_pred cCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccccCCCCCCCCCCCCCcCccccc
Q 047563 51 QKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYR 130 (222)
Q Consensus 51 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~ 130 (222)
++|+.|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|.++.+++....+++|+.+++.
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence 456666666666653 33 34466777777777776 4444 4567777777777777554444667777777777
Q ss_pred CccCC
Q 047563 131 GNLYL 135 (222)
Q Consensus 131 ~n~~~ 135 (222)
+|++.
T Consensus 293 ~N~l~ 297 (622)
T 3g06_A 293 GNPLS 297 (622)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 77754
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.83 E-value=1.9e-08 Score=86.79 Aligned_cols=78 Identities=27% Similarity=0.451 Sum_probs=37.5
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 106 (222)
++|+.|++++|.+++ +| .+.++++|+.|++++|.+++ +|..+ .+|+.|++++|++++ +| .+..+++|+.|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 456666666666663 44 35556666666666655553 33221 244444444444442 23 2344444444444
Q ss_pred ccccCC
Q 047563 107 SYNNLS 112 (222)
Q Consensus 107 ~~N~l~ 112 (222)
++|.++
T Consensus 203 ~~N~l~ 208 (454)
T 1jl5_A 203 DNNSLK 208 (454)
T ss_dssp CSSCCS
T ss_pred CCCcCC
Confidence 444433
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.82 E-value=1.4e-10 Score=95.59 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=79.9
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCC-cCCCC-cCccCCCCCCCCeEEccCC-cCCCc-CchhhhcCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN-CLSGS-IPRSFSNLKMIESLDLSNN-RLSGQ-IPAQLIELN 99 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~ 99 (222)
..+++|+.|++++|.+++..+..+..+++|+.|++++| .+++. .+..+..+++|+.|++++| .+++. ++..+..++
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 45788899999998888777788888888999999888 56642 5666777888888888888 77743 466677777
Q ss_pred -ccCceeccccc--CC-CCCCCC-CCCCCcCcccccCcc
Q 047563 100 -FLSNFNVSYNN--LS-GLIPDK-GQYSTFDETSYRGNL 133 (222)
Q Consensus 100 -~L~~L~l~~N~--l~-~~~p~~-~~l~~l~~l~l~~n~ 133 (222)
+|+.|++++|. ++ +..+.. ..+++|+.+++.+|.
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 88888888873 43 112222 346677777777776
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.82 E-value=3e-10 Score=95.70 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=57.5
Q ss_pred CCCcccEEEeecCCCCC----CCChhccCCcCCCeEEccCCcCCCCcCccCC----CC---------CCCCeEEccCCcC
Q 047563 25 NLNYMVGLDLSCNQLTG----NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFS----NL---------KMIESLDLSNNRL 87 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~Ls~N~l 87 (222)
.+++|+.|+|++|.++. .+|..+..+++|+.|++++|.+....+..+. .+ ++|+.|++++|++
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 34556666666666654 2444555556666666666655432222222 22 5666666666665
Q ss_pred C-CcCc---hhhhcCcccCceecccccCC--C---CCC-CCCCCCCcCcccccCccC
Q 047563 88 S-GQIP---AQLIELNFLSNFNVSYNNLS--G---LIP-DKGQYSTFDETSYRGNLY 134 (222)
Q Consensus 88 ~-~~~p---~~~~~l~~L~~L~l~~N~l~--~---~~p-~~~~l~~l~~l~l~~n~~ 134 (222)
+ ...| ..+..+++|+.|++++|.++ + ..+ ....+++|+.+++.+|.+
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 4 2233 24445566666666666655 1 222 224455666666666654
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.80 E-value=2.2e-08 Score=83.23 Aligned_cols=86 Identities=20% Similarity=0.236 Sum_probs=63.7
Q ss_pred cEEEEEECCcEeeeCC--CCCCcccEEEeecCCCCCCCC-hhccCCcCCCe-EEccCCcCCCCcCccCCCCCCCCeEEcc
Q 047563 8 VKVEFVTKNRYELYNG--SNLNYMVGLDLSCNQLTGNVP-SEIGDLQKIRV-LNLSHNCLSGSIPRSFSNLKMIESLDLS 83 (222)
Q Consensus 8 ~~~~~~~~~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 83 (222)
..+.+..+.......+ .++++|+.|+|++|.+.+.+| ..|.++++++. +.++.|.++...|..|..+++|+.|+++
T Consensus 33 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 33 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112 (350)
T ss_dssp SEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE
T ss_pred CEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccc
Confidence 3445554555444322 578999999999999876554 56788888775 5667788987778889999999999999
Q ss_pred CCcCCCcCch
Q 047563 84 NNRLSGQIPA 93 (222)
Q Consensus 84 ~N~l~~~~p~ 93 (222)
+|++....+.
T Consensus 113 ~n~l~~~~~~ 122 (350)
T 4ay9_X 113 NTGIKHLPDV 122 (350)
T ss_dssp EECCSSCCCC
T ss_pred ccccccCCch
Confidence 9988754443
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.79 E-value=2.5e-08 Score=86.06 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=36.1
Q ss_pred cCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccccCCCCCCCCCCCCCcCccccc
Q 047563 51 QKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYR 130 (222)
Q Consensus 51 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~ 130 (222)
++|+.|++++|.+++ +| .|..+++|+.|++++|++++ +|.. ..+|+.|++++|.+++. |....+++|+.+++.
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-PELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-CCCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-ccccCCCCCCEEECC
Confidence 345555555555553 34 35555555555555555552 3322 13455555555555543 233444444444444
Q ss_pred Ccc
Q 047563 131 GNL 133 (222)
Q Consensus 131 ~n~ 133 (222)
+|.
T Consensus 204 ~N~ 206 (454)
T 1jl5_A 204 NNS 206 (454)
T ss_dssp SSC
T ss_pred CCc
Confidence 444
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.75 E-value=4.8e-08 Score=87.47 Aligned_cols=79 Identities=27% Similarity=0.235 Sum_probs=41.1
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
.+++|+.|+|++|.++ .+|. .+++|+.|++++|.+++ +|. .+++|+.|++++|+++. +|. .+++|+.|
T Consensus 79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L 146 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQEL 146 (622)
T ss_dssp CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEE
Confidence 3455555555555555 2332 34555555555555552 222 34555566666666552 333 23566666
Q ss_pred ecccccCCCCC
Q 047563 105 NVSYNNLSGLI 115 (222)
Q Consensus 105 ~l~~N~l~~~~ 115 (222)
++++|.+++.+
T Consensus 147 ~Ls~N~l~~l~ 157 (622)
T 3g06_A 147 SVSDNQLASLP 157 (622)
T ss_dssp ECCSSCCSCCC
T ss_pred ECcCCcCCCcC
Confidence 66666666543
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.75 E-value=2.1e-09 Score=89.82 Aligned_cols=105 Identities=23% Similarity=0.193 Sum_probs=88.1
Q ss_pred EEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcC----ccCCCCC-CCCeEEccCCcCCCcCchhhhcC-----cc
Q 047563 31 GLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP----RSFSNLK-MIESLDLSNNRLSGQIPAQLIEL-----NF 100 (222)
Q Consensus 31 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 100 (222)
.++++.|.+++..|..+...++|+.|++++|.+++..+ ..+..++ +|+.|++++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46789999999888877777779999999999997666 7788888 89999999999998878888775 89
Q ss_pred cCceecccccCCCCCCCC-----CCC-CCcCcccccCccCC
Q 047563 101 LSNFNVSYNNLSGLIPDK-----GQY-STFDETSYRGNLYL 135 (222)
Q Consensus 101 L~~L~l~~N~l~~~~p~~-----~~l-~~l~~l~l~~n~~~ 135 (222)
|+.|++++|.+++..+.. ..+ ++|+.+++.+|.+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 999999999998876542 223 67888888888753
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=4.1e-08 Score=80.90 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=84.8
Q ss_pred CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCC-eEEccCCcCCCcCchhhhcCcccCce
Q 047563 26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE-SLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
+++|+.++|++|.++...+..|.++++|+.+++++| ++...+..|.++.+|+ .+++.+ +++...+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 789999999999999777788999999999999998 7767778899999999 999998 7776777889999999999
Q ss_pred ecccccCCCCCCCC-CCCCCcCcc
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDET 127 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l 127 (222)
++++|.++.+.+.. ..+++|+.+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEE
T ss_pred EeCCCccCccchhhhcCCcchhhh
Confidence 99999998887665 445556554
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.57 E-value=4e-08 Score=78.87 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=45.2
Q ss_pred cCCcCCCeEEccCCcCCC--CcCccCCCCCCCCeEEccCCcCCCcCchhhhcCc--ccCceecccccCCCCCC
Q 047563 48 GDLQKIRVLNLSHNCLSG--SIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELN--FLSNFNVSYNNLSGLIP 116 (222)
Q Consensus 48 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~p 116 (222)
..+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|++++|++.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 356777778888887775 3345556777788888888877754 2334444 77778888888776554
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.54 E-value=1.6e-09 Score=92.84 Aligned_cols=111 Identities=15% Similarity=0.056 Sum_probs=79.0
Q ss_pred CCCcccEEEeecCCCCCC----CChhccCCcCCCeEEccCCcCCCCcCccCC-----CCCCCCeEEccCCcCCCc----C
Q 047563 25 NLNYMVGLDLSCNQLTGN----VPSEIGDLQKIRVLNLSHNCLSGSIPRSFS-----NLKMIESLDLSNNRLSGQ----I 91 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~ 91 (222)
.+++|+.|++++|.++.. ++..+..+++|+.|++++|.+....+..+. ..++|+.|++++|.+++. +
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 478999999999998854 566677788999999999988644333332 236888888888888754 3
Q ss_pred chhhhcCcccCceecccccCCCCCCCC------CCCCCcCcccccCccCC
Q 047563 92 PAQLIELNFLSNFNVSYNNLSGLIPDK------GQYSTFDETSYRGNLYL 135 (222)
Q Consensus 92 p~~~~~l~~L~~L~l~~N~l~~~~p~~------~~l~~l~~l~l~~n~~~ 135 (222)
+..+..+++|+.|++++|.++...+.. ...++|+.+++.+|.+.
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 556667788888888888876543221 11457778888777643
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.50 E-value=2.9e-09 Score=91.33 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=80.6
Q ss_pred CCCcccEEEeecCCCCCCC-----ChhccCCcCCCeEEccCCcCCCC----cCccCCCCCCCCeEEccCCcCCCcCchhh
Q 047563 25 NLNYMVGLDLSCNQLTGNV-----PSEIGDLQKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDLSNNRLSGQIPAQL 95 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 95 (222)
.+++|+.|++++|.++... +..+..+++|+.|++++|.++.. ++..+..+++|+.|++++|.+....+..+
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 4688999999999887432 22333578999999999988753 56667778899999999998875544444
Q ss_pred hcC-----cccCceecccccCCCCC----CCC-CCCCCcCcccccCccC
Q 047563 96 IEL-----NFLSNFNVSYNNLSGLI----PDK-GQYSTFDETSYRGNLY 134 (222)
Q Consensus 96 ~~l-----~~L~~L~l~~N~l~~~~----p~~-~~l~~l~~l~l~~n~~ 134 (222)
... ++|+.|++++|.+++.. +.. ..+++|+.+++.+|.+
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence 432 68999999999887652 111 3457888888888864
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.33 E-value=1.7e-08 Score=84.89 Aligned_cols=106 Identities=22% Similarity=0.197 Sum_probs=47.8
Q ss_pred cccEEEeecCCCCCCCChhc-----cCCcCCCeEEccCCcCCCC----cCccCCCCCCCCeEEccCCcCCCcC----chh
Q 047563 28 YMVGLDLSCNQLTGNVPSEI-----GDLQKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDLSNNRLSGQI----PAQ 94 (222)
Q Consensus 28 ~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~ 94 (222)
+|+.|+|++|.++......+ ...++|+.|++++|.++.. ++..+...++|++|+|++|++.... +..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 44555555555442222222 1234555555555555421 2222344555555666655554221 233
Q ss_pred hhcCcccCceecccccCCCCCCCC-----CCCCCcCcccccCcc
Q 047563 95 LIELNFLSNFNVSYNNLSGLIPDK-----GQYSTFDETSYRGNL 133 (222)
Q Consensus 95 ~~~l~~L~~L~l~~N~l~~~~p~~-----~~l~~l~~l~l~~n~ 133 (222)
+...++|+.|++++|.++...... ...++|+.+++.+|+
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 344455566666665554321110 123455556665555
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=3.5e-07 Score=73.35 Aligned_cols=61 Identities=28% Similarity=0.314 Sum_probs=37.6
Q ss_pred CCCCCCCeEEccCCcCCC--cCchhhhcCcccCceecccccCCCCCCCCCCCC--CcCcccccCcc
Q 047563 72 SNLKMIESLDLSNNRLSG--QIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYS--TFDETSYRGNL 133 (222)
Q Consensus 72 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~--~l~~l~l~~n~ 133 (222)
..+++|+.|+|++|+|++ .+|..+..+++|+.|+|++|.+++. .....+. .|+.|.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 345677777777777765 3345556677777777777777665 1222222 66666777776
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=2.2e-06 Score=70.41 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=37.7
Q ss_pred CCCCCeEEccCCcCCCcCchhhhcCcccCceecccccCCCCCCCC-CCCCCcC-cccccC
Q 047563 74 LKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK-GQYSTFD-ETSYRG 131 (222)
Q Consensus 74 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~-~l~l~~ 131 (222)
+++|+.+++++|+++...+..|.++.+|+.+++.+| +..+.+.. ..+.+|+ .+.+..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 457777777777777555566777777888877776 55554444 4455566 665554
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.18 E-value=2.9e-07 Score=77.37 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=70.8
Q ss_pred CCCcccEEEeecCCCCCC----CChhccCCcCCCeEEccCCcCCCCc----CccCCCCCCCCeEEccCCcCCCc----Cc
Q 047563 25 NLNYMVGLDLSCNQLTGN----VPSEIGDLQKIRVLNLSHNCLSGSI----PRSFSNLKMIESLDLSNNRLSGQ----IP 92 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~----~p 92 (222)
..+.|+.|+|++|.++.. ++..+...++|+.|+|++|.+.... +..+...++|+.|+|++|.++.. ++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 357899999999999742 3445578899999999999987432 45567778999999999999853 23
Q ss_pred hhhhcCcccCceecccccCCCC
Q 047563 93 AQLIELNFLSNFNVSYNNLSGL 114 (222)
Q Consensus 93 ~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
..+...++|+.|++++|.++..
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHhCCCCCEEeccCCCCCHH
Confidence 3455678999999999998754
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=3e-07 Score=69.69 Aligned_cols=110 Identities=11% Similarity=0.122 Sum_probs=76.5
Q ss_pred CCCCcccEEEeecC-CCCCC----CChhccCCcCCCeEEccCCcCCCC----cCccCCCCCCCCeEEccCCcCCCc----
Q 047563 24 SNLNYMVGLDLSCN-QLTGN----VPSEIGDLQKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDLSNNRLSGQ---- 90 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~---- 90 (222)
...+.|+.|+|++| .++.. +...+...++|+.|+|++|.+... +...+...++|+.|+|++|.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 35678999999999 88742 344566778899999999998643 233445567899999999998753
Q ss_pred CchhhhcCcccCceec--ccccCCCCCCCC-----CCCCCcCcccccCcc
Q 047563 91 IPAQLIELNFLSNFNV--SYNNLSGLIPDK-----GQYSTFDETSYRGNL 133 (222)
Q Consensus 91 ~p~~~~~l~~L~~L~l--~~N~l~~~~p~~-----~~l~~l~~l~l~~n~ 133 (222)
+...+...++|+.|++ ++|.+....... ...++|+.+++.+|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 2445556678999999 778886432111 223567777766654
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.03 E-value=3e-07 Score=81.17 Aligned_cols=60 Identities=8% Similarity=-0.102 Sum_probs=33.2
Q ss_pred CCCCCeEEccCCcCCC-cCchhhhcCcccCceecccccCCCCC-CCC-CCCCCcCcccccCcc
Q 047563 74 LKMIESLDLSNNRLSG-QIPAQLIELNFLSNFNVSYNNLSGLI-PDK-GQYSTFDETSYRGNL 133 (222)
Q Consensus 74 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~-~~l~~l~~l~l~~n~ 133 (222)
+++|+.|++++|++++ .++..+..+++|+.|++++|.++... +.. ..+++|+.+++.+|.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 5566666666666653 22333455666666676666654321 111 235566666666665
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.90 E-value=1.3e-06 Score=77.11 Aligned_cols=82 Identities=10% Similarity=0.080 Sum_probs=43.9
Q ss_pred CCCcccEEEeecCCCCCC----CChhccCCcCCCeEEccCCcCCC----CcCccCCCCCCCCeEEccCCcCCCcCchhhh
Q 047563 25 NLNYMVGLDLSCNQLTGN----VPSEIGDLQKIRVLNLSHNCLSG----SIPRSFSNLKMIESLDLSNNRLSGQIPAQLI 96 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 96 (222)
.+++|+.|+|++|.+++. ++..+..+++|+.|++++|.+++ .++..+..+++|+.|++++|.+.+ +|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 355666666666665443 22233445566666666666541 223334455666666666666552 445555
Q ss_pred cCcccCceecc
Q 047563 97 ELNFLSNFNVS 107 (222)
Q Consensus 97 ~l~~L~~L~l~ 107 (222)
.+++|+.|+++
T Consensus 241 ~~~~L~~L~l~ 251 (592)
T 3ogk_B 241 AAANLEEFCGG 251 (592)
T ss_dssp HCTTCCEEEEC
T ss_pred hhhHHHhhccc
Confidence 55555555554
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.88 E-value=1.3e-06 Score=77.08 Aligned_cols=87 Identities=13% Similarity=0.054 Sum_probs=52.2
Q ss_pred ccCCcCCCeEEccCCcCCCCcCccCCC-CCCCCeEEccCCcCCCcCchhh-hcCcccCceecccccCCCCCCC-C-CCCC
Q 047563 47 IGDLQKIRVLNLSHNCLSGSIPRSFSN-LKMIESLDLSNNRLSGQIPAQL-IELNFLSNFNVSYNNLSGLIPD-K-GQYS 122 (222)
Q Consensus 47 ~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~-~-~~l~ 122 (222)
+..+++|+.|++++ .++...+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.++..... . ..++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34455666666655 343333333333 6777888888887765444444 5677888888888877433221 1 3466
Q ss_pred CcCcccccCccC
Q 047563 123 TFDETSYRGNLY 134 (222)
Q Consensus 123 ~l~~l~l~~n~~ 134 (222)
+|+.+++.+|+.
T Consensus 507 ~L~~L~l~~~~~ 518 (594)
T 2p1m_B 507 TMRSLWMSSCSV 518 (594)
T ss_dssp GSSEEEEESSCC
T ss_pred CCCEEeeeCCCC
Confidence 777777777764
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.80 E-value=4.1e-06 Score=63.30 Aligned_cols=88 Identities=14% Similarity=0.239 Sum_probs=68.2
Q ss_pred CCCcccEEEeecCCCCCC----CChhccCCcCCCeEEccCCcCCCC----cCccCCCCCCCCeEEc--cCCcCCCcC---
Q 047563 25 NLNYMVGLDLSCNQLTGN----VPSEIGDLQKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDL--SNNRLSGQI--- 91 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~~--- 91 (222)
..+.|+.|+|++|.++.. +...+...++|+.|+|++|.+... +...+...++|+.|++ ++|.+....
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 357899999999999842 234455668899999999999743 3456677789999999 889997542
Q ss_pred -chhhhcCcccCceecccccCC
Q 047563 92 -PAQLIELNFLSNFNVSYNNLS 112 (222)
Q Consensus 92 -p~~~~~l~~L~~L~l~~N~l~ 112 (222)
...+...++|+.|++++|.+.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCcCEEeccCCCCC
Confidence 334555689999999999875
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.69 E-value=1.4e-05 Score=59.91 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=47.0
Q ss_pred cccEEEeecCCCCCCCChhccCCcCCCeEEccCCc-CCCCcCccCCCC----CCCCeEEccCCc-CCCcCchhhhcCccc
Q 047563 28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNC-LSGSIPRSFSNL----KMIESLDLSNNR-LSGQIPAQLIELNFL 101 (222)
Q Consensus 28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~L 101 (222)
.|+.||++++.++..--..+.++++|+.|+|+++. ++...-..+..+ ++|+.|+++++. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46777777776664433445666777777777764 443222233333 357777777653 554333445566666
Q ss_pred Cceecccc
Q 047563 102 SNFNVSYN 109 (222)
Q Consensus 102 ~~L~l~~N 109 (222)
+.|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 77766655
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.59 E-value=0.00017 Score=61.05 Aligned_cols=105 Identities=8% Similarity=0.024 Sum_probs=81.1
Q ss_pred CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCC-----CCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCccc
Q 047563 27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLS-----GSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFL 101 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 101 (222)
..|+.+.+ .+.++...+..|.++++|+.+.+.+|.+. ...+..|.++.+|+.+.+.+ .+.......|.++.+|
T Consensus 248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 57888888 45566677888999999999999888765 35567899999999999984 5775667788899999
Q ss_pred CceecccccCCCCCCCC-CCCCCcCcccccCccCC
Q 047563 102 SNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYL 135 (222)
Q Consensus 102 ~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~ 135 (222)
+.+.+..| ++.+.+.. ... +|+.+.+.+|...
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 99999655 66555555 345 8888888887543
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.59 E-value=7.6e-06 Score=72.10 Aligned_cols=87 Identities=18% Similarity=0.168 Sum_probs=64.0
Q ss_pred CCCcccEEEeecCCCCCCCChhccC-CcCCCeEEccCCcCCCCcCccC-CCCCCCCeEEccCCcCCCcCch-hhhcCccc
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRSF-SNLKMIESLDLSNNRLSGQIPA-QLIELNFL 101 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L 101 (222)
++++|+.|++++ .++...+..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++..+. ....+++|
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 356777777766 555443444444 7899999999999876555444 6689999999999999644333 34458999
Q ss_pred CceecccccCC
Q 047563 102 SNFNVSYNNLS 112 (222)
Q Consensus 102 ~~L~l~~N~l~ 112 (222)
+.|++++|+++
T Consensus 509 ~~L~l~~~~~~ 519 (594)
T 2p1m_B 509 RSLWMSSCSVS 519 (594)
T ss_dssp SEEEEESSCCB
T ss_pred CEEeeeCCCCC
Confidence 99999999884
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.57 E-value=0.00024 Score=60.06 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=81.8
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCC-----CcCchhhhcC
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS-----GQIPAQLIEL 98 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l 98 (222)
.++++|+.+++..| ++..-...|.+ .+|+.+.+. +.++...+..|.++.+|+.+.+.+|.+. ...+..|.++
T Consensus 223 ~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c 299 (401)
T 4fdw_A 223 LKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC 299 (401)
T ss_dssp TTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC
T ss_pred hCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC
Confidence 46889999999875 56566677877 789999994 5566566788999999999999998775 3556789999
Q ss_pred cccCceecccccCCCCCCCC-CCCCCcCcccccCc
Q 047563 99 NFLSNFNVSYNNLSGLIPDK-GQYSTFDETSYRGN 132 (222)
Q Consensus 99 ~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n 132 (222)
++|+.+.+.+ .++.+.... ..+.+|+.+.+..+
T Consensus 300 ~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 300 PKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred ccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 9999999984 466665554 45677888877555
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.40 E-value=2.9e-05 Score=64.95 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=6.7
Q ss_pred CCcccEEEeecC
Q 047563 26 LNYMVGLDLSCN 37 (222)
Q Consensus 26 l~~L~~L~Ls~N 37 (222)
+++|+.|+|++|
T Consensus 171 ~P~L~~L~L~g~ 182 (362)
T 2ra8_A 171 MPLLNNLKIKGT 182 (362)
T ss_dssp CTTCCEEEEECC
T ss_pred CCCCcEEEEeCC
Confidence 355666666554
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.34 E-value=0.00042 Score=49.15 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=18.9
Q ss_pred CCCeEEccCCcCCCcCchhhhcCcccCceecccccCCC
Q 047563 76 MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSG 113 (222)
Q Consensus 76 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 113 (222)
+|+.|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 34555555555554434444455555555555555543
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.11 E-value=0.0009 Score=47.40 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=45.7
Q ss_pred cEEEeecCCCC-CCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCC
Q 047563 30 VGLDLSCNQLT-GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88 (222)
Q Consensus 30 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 88 (222)
+.++.+++.++ ..+|..+ .++++.|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888887 3455443 246899999999999777788999999999999999875
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.04 E-value=0.00017 Score=60.30 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=75.0
Q ss_pred CCCcccEEEeecCCCCCCCChhcc--CCcCCCeEEccC--CcCCCC-----cCccC--CCCCCCCeEEccCCcCCCcCch
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIG--DLQKIRVLNLSH--NCLSGS-----IPRSF--SNLKMIESLDLSNNRLSGQIPA 93 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~~--n~l~~~-----~p~~~--~~l~~L~~L~Ls~N~l~~~~p~ 93 (222)
.+++|+.|++..+.++......+. .+++|+.|+|+. |...+. +...+ ..+++|+.|+|++|.+....+.
T Consensus 191 ~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 478999999999887643333343 689999999863 221111 11122 2478999999999998754444
Q ss_pred hhh---cCcccCceecccccCCCCC----CCC-CCCCCcCcccccCccC
Q 047563 94 QLI---ELNFLSNFNVSYNNLSGLI----PDK-GQYSTFDETSYRGNLY 134 (222)
Q Consensus 94 ~~~---~l~~L~~L~l~~N~l~~~~----p~~-~~l~~l~~l~l~~n~~ 134 (222)
.+. .+++|+.|+++.|.+.... +.. ..+++|+.+++..|.+
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 444 4789999999999987631 222 3467889999888763
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.98 E-value=0.00017 Score=54.02 Aligned_cols=84 Identities=10% Similarity=0.115 Sum_probs=61.1
Q ss_pred cCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCc-CCCcCchhhhcC----cccCceeccccc-CCCCC-CCCCCCCC
Q 047563 51 QKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR-LSGQIPAQLIEL----NFLSNFNVSYNN-LSGLI-PDKGQYST 123 (222)
Q Consensus 51 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~l~~N~-l~~~~-p~~~~l~~ 123 (222)
..|+.||++++.++...-..+..+++|+.|+|+++. ++..--..+..+ ++|+.|+++++. ++... .....+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999886666677899999999999996 664433445553 479999999975 55321 11145778
Q ss_pred cCcccccCccC
Q 047563 124 FDETSYRGNLY 134 (222)
Q Consensus 124 l~~l~l~~n~~ 134 (222)
|+.|++++.+.
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 88888776553
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.50 E-value=0.0066 Score=50.78 Aligned_cols=106 Identities=8% Similarity=0.205 Sum_probs=70.2
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++..|+.+.+..+..+ .-...|.+.++|+.+.+. +.++......|.++.+|+.+.+..+ ++......|.++.+|+.
T Consensus 262 ~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 45677777777665443 555667778888888875 3445455567888888888888764 55355567888888888
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCcc
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNL 133 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~ 133 (222)
+.+..+ ++.+.... ....+|+.+.+.++.
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 888644 44443333 456677777776654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.44 E-value=0.024 Score=46.94 Aligned_cols=102 Identities=12% Similarity=0.117 Sum_probs=56.8
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++..|+.+.+..+ ++..-...|.+..+|+.+.+..+ ++......|.++.+|+.+.+.++.++......|.++.+|+.+
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 3455555555544 33344455556666666666443 332444556777777777777766664555667777777777
Q ss_pred ecccccCCCCCCCC-CCCCCcCcccc
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDETSY 129 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l~l 129 (222)
.+..+ ++.+.... ....+|+.+.+
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 76543 43333322 23444555544
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.36 E-value=0.0045 Score=51.78 Aligned_cols=101 Identities=11% Similarity=0.038 Sum_probs=61.0
Q ss_pred CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563 25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF 104 (222)
Q Consensus 25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 104 (222)
++..++.+....+.+. ...|....+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++......|.++.+|+.+
T Consensus 274 ~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 274 NCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp TCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence 4556666665554332 344666777777777654 44345566777777777777644 553445667777777777
Q ss_pred ecccccCCCCCCCC-CCCCCcCcccccC
Q 047563 105 NVSYNNLSGLIPDK-GQYSTFDETSYRG 131 (222)
Q Consensus 105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~ 131 (222)
.+..| ++.+.... ....+|+.+.+..
T Consensus 349 ~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 349 NFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred EECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 77655 54444433 3455666665543
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.23 E-value=0.011 Score=49.39 Aligned_cols=85 Identities=11% Similarity=0.200 Sum_probs=68.8
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.+++.|+.+.+. +.++......|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++......|.++.+|+.
T Consensus 285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 285 MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred ccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence 467889999986 4566566778999999999999865 55466678999999999999765 66456778999999999
Q ss_pred eecccccC
Q 047563 104 FNVSYNNL 111 (222)
Q Consensus 104 L~l~~N~l 111 (222)
+++.++..
T Consensus 362 i~~~~~~~ 369 (394)
T 4gt6_A 362 IEYSGSRS 369 (394)
T ss_dssp EEESSCHH
T ss_pred EEECCcee
Confidence 99988753
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.07 E-value=0.012 Score=48.84 Aligned_cols=84 Identities=12% Similarity=0.102 Sum_probs=68.0
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++..|+.+.+..+ ++......|.++++|+.+.+.++.++......|.++.+|+.+.+..+ ++......|.++.+|+.
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST 337 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred ceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence 46778899888654 55456678899999999999999888667788999999999999765 65455678999999999
Q ss_pred eecccc
Q 047563 104 FNVSYN 109 (222)
Q Consensus 104 L~l~~N 109 (222)
+.+..+
T Consensus 338 i~ip~~ 343 (379)
T 4h09_A 338 ISYPKS 343 (379)
T ss_dssp CCCCTT
T ss_pred EEECCc
Confidence 887643
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.48 E-value=0.0035 Score=47.65 Aligned_cols=62 Identities=11% Similarity=0.181 Sum_probs=32.2
Q ss_pred CcccEEEeecC-CCCC----CCChhccCCcCCCeEEccCCcCCCCc----CccCCCCCCCCeEEccCCcCC
Q 047563 27 NYMVGLDLSCN-QLTG----NVPSEIGDLQKIRVLNLSHNCLSGSI----PRSFSNLKMIESLDLSNNRLS 88 (222)
Q Consensus 27 ~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~ 88 (222)
+.|+.|+|++| .|.. .+...+..-+.|+.|+|++|.+.... ...+..-.+|+.|+|+.|.|.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 45666666664 5542 12233444456666666666664221 222333455666666666665
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.39 E-value=0.034 Score=46.40 Aligned_cols=103 Identities=7% Similarity=0.056 Sum_probs=72.5
Q ss_pred CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103 (222)
Q Consensus 24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 103 (222)
.++..++.+.+..+... .....|.....++.+....+.+ ....|..+.+|+.+.+.++ +.......|.++.+|+.
T Consensus 250 ~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 45778888888877554 6667788888888887766542 3346788889999988765 55455677888999999
Q ss_pred eecccccCCCCCCCC-CCCCCcCcccccCc
Q 047563 104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGN 132 (222)
Q Consensus 104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n 132 (222)
+++.++ ++.+.... ....+|+.+.+..+
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 988654 55554444 44567777776554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.86 E-value=0.021 Score=43.33 Aligned_cols=85 Identities=20% Similarity=0.251 Sum_probs=57.9
Q ss_pred CcccEEEeecCCCCC----CCChhccCCcCCCeEEccCCcCCCCcC----ccCCCCCCCCeEEccCCcC---CCc----C
Q 047563 27 NYMVGLDLSCNQLTG----NVPSEIGDLQKIRVLNLSHNCLSGSIP----RSFSNLKMIESLDLSNNRL---SGQ----I 91 (222)
Q Consensus 27 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l---~~~----~ 91 (222)
+.|+.|+|++|.+.. .+...+..=+.|+.|+|+.|.+....- ..+..-..|+.|+|++|.. ... +
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 589999999999983 233445566789999999999974322 3455567799999987643 321 1
Q ss_pred chhhhcCcccCceecccccC
Q 047563 92 PAQLIELNFLSNFNVSYNNL 111 (222)
Q Consensus 92 p~~~~~l~~L~~L~l~~N~l 111 (222)
...+..=++|..|+++.|.+
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 22334446778888776643
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=92.69 E-value=0.016 Score=32.53 Aligned_cols=13 Identities=15% Similarity=-0.138 Sum_probs=4.9
Q ss_pred hhHHHHHhhhhhh
Q 047563 184 LGLLAILWINSFW 196 (222)
Q Consensus 184 ~~v~~~~~~~~~~ 196 (222)
+++++++++.+|+
T Consensus 26 ii~~~~~~~~RRr 38 (44)
T 2ks1_B 26 VVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3333333333333
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=90.54 E-value=0.057 Score=30.26 Aligned_cols=19 Identities=5% Similarity=-0.150 Sum_probs=7.6
Q ss_pred eehhhhhHHHHHhhhhhhh
Q 047563 179 YVTVILGLLAILWINSFWR 197 (222)
Q Consensus 179 ~~~~~~~v~~~~~~~~~~r 197 (222)
+++++++++.++++.+|++
T Consensus 20 v~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 3333333444444444433
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.77 E-value=30 Score=22.48 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=21.6
Q ss_pred CCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccC
Q 047563 42 NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSN 84 (222)
Q Consensus 42 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 84 (222)
+-...|.+..+|+.+.+..+- +......|.++.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 334455555666666555442 224444555555555555544
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.40 E-value=19 Score=23.46 Aligned_cols=46 Identities=11% Similarity=0.041 Sum_probs=31.3
Q ss_pred cCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceeccc
Q 047563 62 CLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY 108 (222)
Q Consensus 62 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 108 (222)
.++......|.++.+|+.+.+..+- +..-...|.++.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 3444556678888888888877653 324556677788887777764
No 169
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=39.46 E-value=4.2 Score=24.59 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=5.8
Q ss_pred eeeeehhhhhHHHHH
Q 047563 176 GASYVTVILGLLAIL 190 (222)
Q Consensus 176 ~~~~~~~~~~v~~~~ 190 (222)
+.++.++++..+.++
T Consensus 15 Gg~~~lll~~glcI~ 29 (70)
T 2klu_A 15 GGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 333334333333333
No 170
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=39.09 E-value=6.4 Score=31.65 Aligned_cols=9 Identities=0% Similarity=-0.415 Sum_probs=0.0
Q ss_pred HHhhhhhhh
Q 047563 189 ILWINSFWR 197 (222)
Q Consensus 189 ~~~~~~~~r 197 (222)
++|+.++++
T Consensus 302 ~~~~~~~~~ 310 (315)
T 1cd1_A 302 YYIWRRRSA 310 (315)
T ss_dssp ---------
T ss_pred HhheehhcC
Confidence 344444333
No 171
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=38.45 E-value=7.4 Score=22.59 Aligned_cols=7 Identities=29% Similarity=0.776 Sum_probs=2.7
Q ss_pred hHHHHHh
Q 047563 185 GLLAILW 191 (222)
Q Consensus 185 ~v~~~~~ 191 (222)
+++.++|
T Consensus 28 li~~~Lw 34 (54)
T 2knc_A 28 ILVLAMW 34 (54)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333444
No 172
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=37.55 E-value=7 Score=36.27 Aligned_cols=9 Identities=33% Similarity=0.556 Sum_probs=0.0
Q ss_pred HHhhheeee
Q 047563 205 DACIDLCYY 213 (222)
Q Consensus 205 ~~~~~~~~~ 213 (222)
+.+++....
T Consensus 743 ~d~r~ni~~ 751 (880)
T 1q55_A 743 DDTRDNIFY 751 (880)
T ss_dssp ---------
T ss_pred cccccceEE
Confidence 555555443
No 173
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=30.87 E-value=8.6 Score=22.30 Aligned_cols=6 Identities=50% Similarity=1.276 Sum_probs=2.3
Q ss_pred HHHHHh
Q 047563 186 LLAILW 191 (222)
Q Consensus 186 v~~~~~ 191 (222)
+++++|
T Consensus 26 ii~~Lw 31 (54)
T 2l8s_A 26 LILALW 31 (54)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333334
No 174
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=30.14 E-value=16 Score=19.99 Aligned_cols=8 Identities=0% Similarity=0.297 Sum_probs=3.1
Q ss_pred hHHHHHhh
Q 047563 185 GLLAILWI 192 (222)
Q Consensus 185 ~v~~~~~~ 192 (222)
+++.++..
T Consensus 33 IVvsl~ml 40 (43)
T 2llm_A 33 IVITLVML 40 (43)
Confidence 33334333
Done!