Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>047564
MVKLASARETRMYGPRLTRNRAECMNAGLYVFATIVLLGGFAAEFSREPKSGLVLLLIAL
ALIMVINVHDLLAHLAGINYWFPLLGFDIQLALVEFAVPVVQTLGSLLFFLAILFLFIQE
EKNYGLFKLEKHALNMLIAGPVLWLLGSIHNSCQIYERADGHVQILQQSVHIPFLMGSLL
LMVGAILNSREQAGWMHHGTELLSTDWAWLGIIGSLLLFIGGLTNVVKVFKMQQMDGLRL
EKLRGGAHERLMQEREGQVPLIIEEQRRRKRPAAEEEAIAVAAGIATASSTPVPAPASTP
YKDVLVGQP

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  047564
        (309 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2167418 - symbol:AT5G24130 "AT5G24130" species...   711  3.3e-70   1


>TAIR|locus:2167418 [details] [associations]
            symbol:AT5G24130 "AT5G24130" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB010696
            EMBL:BT005307 EMBL:AK118424 IPI:IPI00517115 RefSeq:NP_197801.1
            UniGene:At.30976 IntAct:Q9FL61 PaxDb:Q9FL61 PRIDE:Q9FL61
            EnsemblPlants:AT5G24130.1 GeneID:832478 KEGG:ath:AT5G24130
            TAIR:At5g24130 eggNOG:NOG265800 HOGENOM:HOG000238960
            InParanoid:Q9FL61 OMA:VNVHDLV PhylomeDB:Q9FL61
            ProtClustDB:CLSN2686316 Genevestigator:Q9FL61 Uniprot:Q9FL61
        Length = 316

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 147/263 (55%), Positives = 176/263 (66%)

Query:     1 MVKLASARETRMYGPRLTRNRAECMNAGLYVFATIVLLGGFAAE-FSREPKSGXXXXXXX 59
             MVKLA+ARE R YGPRL R+RAE +NAGLY+FAT+VL+GGF A  FS EP+SG       
Sbjct:     1 MVKLATAREIRTYGPRLGRSRAEYINAGLYLFATVVLIGGFTATGFSWEPRSGLVLILLA 60

Query:    60 XXXXXXXNVHDLLAHLAGINYWFPLLGFDIQLALVEFAVPVVQTLGSXXXXXXXXXXXXQ 119
                    NVHDL+AHLAGI+Y   L+ +D+QL LVEFAVP+VQ  GS            Q
Sbjct:    61 LVLITAVNVHDLVAHLAGIDYRLRLMEYDLQLGLVEFAVPLVQIAGSVVFFLGIFFVFHQ 120

Query:   120 EEKNYGLFKLEKHALNMLIAGPVLWLLGSIHNSCQIYERADGHVQILQQSVHIPFLMGSL 179
              E   G    E HALN+LIAGP+LWL+GSIHNSCQIYERAD HVQILQQ V+IPFL+GSL
Sbjct:   121 AETKRGYSGREHHALNLLIAGPLLWLIGSIHNSCQIYERADSHVQILQQCVYIPFLVGSL 180

Query:   180 LLMVGAILNSREQAGWMHHGTELLSTDWAWXXXXXXXXXXXXXXTNVVKVFKMQQMDGLR 239
             L +V A+LNS + +G    G +LL   W W               NVVKVF   Q+ GLR
Sbjct:   181 LFLVSAVLNSLDISGSSRSGLKLLGERWIWLGISGAICLFVGGLLNVVKVFNFVQISGLR 240

Query:   240 LEKLRGGAHERLMQEREGQVPLI 262
             LEKLRGGA +RL++ REG +PL+
Sbjct:   241 LEKLRGGAQDRLLEGREGYLPLV 263


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      309       232   0.00085  113 3  11 22  0.36    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.32u 0.09s 14.41t   Elapsed:  00:00:00
  Total cpu time:  14.32u 0.09s 14.41t   Elapsed:  00:00:00
  Start:  Sat May 11 13:45:53 2013   End:  Sat May 11 13:45:53 2013

Back to top