BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047564
         (309 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0CP34|NST1_CRYNJ Stress response protein NST1 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain JEC21 / ATCC MYA-565)
           GN=NST1 PE=3 SV=1
          Length = 1353

 Score = 34.3 bits (77), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 17/87 (19%)

Query: 231 KMQQMDGLRLEKLRGGAHERLMQEREGQVPLIIEEQRRRKRPAAEE---------EAIAV 281
           + ++++  R+EK+R     R  +E   Q  +I  +Q +R+R A  E         E I+ 
Sbjct: 903 RQERLEASRMEKVRKEEAARKEREAVEQAKIIAAQQAQRERAAKAEKNTADKAAAERISA 962

Query: 282 AAGIATASSTPV--------PAPASTP 300
           A  I  A++ PV        P+  STP
Sbjct: 963 ARVIPVAATAPVLATLGLKSPSKGSTP 989


>sp|P0CP35|NST1_CRYNB Stress response protein NST1 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain B-3501A) GN=NST1 PE=3 SV=1
          Length = 1353

 Score = 34.3 bits (77), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 17/87 (19%)

Query: 231 KMQQMDGLRLEKLRGGAHERLMQEREGQVPLIIEEQRRRKRPAAEE---------EAIAV 281
           + ++++  R+EK+R     R  +E   Q  +I  +Q +R+R A  E         E I+ 
Sbjct: 903 RQERLEASRMEKVRKEEAARKEREAVEQAKIIAAQQAQRERAAKAEKNTADKAAAERISA 962

Query: 282 AAGIATASSTPV--------PAPASTP 300
           A  I  A++ PV        P+  STP
Sbjct: 963 ARVIPVAATAPVLATLGLKSPSKGSTP 989


>sp|Q9PRA4|Y041_UREPA Uncharacterized protein UU041 OS=Ureaplasma parvum serovar 3
           (strain ATCC 700970) GN=UU041 PE=4 SV=1
          Length = 120

 Score = 31.2 bits (69), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 210 LGIIGSLLLFIGGLTNVVKVFKMQQMDGLRLEKL 243
           +GI GS+ L IG +  V+KV K ++ DG+ L  L
Sbjct: 11  IGIFGSIFLVIGYIPQVIKVIKTKRTDGISLTFL 44


>sp|Q1K7M0|M28P1_NEUCR Probable zinc metalloprotease NCU04133 OS=Neurospora crassa (strain
           ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
           987) GN=9G6.250 PE=3 SV=1
          Length = 1072

 Score = 31.2 bits (69), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 262 IIEEQRRRKRPAAEEEAIAVAAGIATASSTPVPAPASTPYKDVLVGQP 309
           + +E  + K PA     ++ A  +A  SS P PAP +TP      G P
Sbjct: 631 VAQEPSKSKAPAGTTNGLSTAPSVAAHSSQPQPAP-TTPIPGRSSGAP 677


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.140    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,611,693
Number of Sequences: 539616
Number of extensions: 4398186
Number of successful extensions: 18543
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 18527
Number of HSP's gapped (non-prelim): 29
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)