Query 047564
Match_columns 309
No_of_seqs 32 out of 34
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 12:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14145 YrhK: YrhK-like prote 98.5 3.1E-07 6.8E-12 69.0 5.5 55 165-229 3-57 (59)
2 PF14145 YrhK: YrhK-like prote 98.1 5E-06 1.1E-10 62.5 4.9 54 93-154 3-56 (59)
3 PF09925 DUF2157: Predicted me 90.5 4.7 0.0001 34.1 10.7 114 10-148 19-139 (145)
4 PRK12585 putative monovalent c 74.9 19 0.0004 33.7 8.3 11 247-257 138-148 (197)
5 PF03006 HlyIII: Haemolysin-II 68.8 54 0.0012 28.4 9.5 79 23-110 6-95 (222)
6 PF05915 DUF872: Eukaryotic pr 63.3 9.9 0.00021 32.3 3.7 50 96-151 45-94 (115)
7 PF14387 DUF4418: Domain of un 61.9 34 0.00074 29.4 6.7 86 19-117 31-120 (124)
8 COG1269 NtpI Archaeal/vacuolar 55.9 1.3E+02 0.0027 32.2 11.0 179 8-225 345-542 (660)
9 PF03348 Serinc: Serine incorp 55.9 2.4E+02 0.0052 28.7 14.0 196 24-236 106-312 (429)
10 COG1030 NfeD Membrane-bound se 55.5 47 0.001 34.4 7.6 70 98-181 278-347 (436)
11 PF01036 Bac_rhodopsin: Bacter 49.6 2E+02 0.0043 25.9 11.0 81 100-180 2-89 (222)
12 TIGR00950 2A78 Carboxylate/Ami 48.5 1.8E+02 0.0039 25.4 9.3 79 101-188 102-180 (260)
13 PF04156 IncA: IncA protein; 44.7 1.3E+02 0.0028 26.0 7.7 24 97-120 41-64 (191)
14 PRK10692 hypothetical protein; 42.8 51 0.0011 27.7 4.6 19 130-148 42-61 (92)
15 TIGR01065 hlyIII channel prote 42.5 1E+02 0.0022 27.6 6.9 52 95-148 2-53 (204)
16 PF10762 DUF2583: Protein of u 41.0 52 0.0011 27.5 4.4 19 130-148 42-61 (89)
17 PF14927 Neurensin: Neurensin 40.8 1.2E+02 0.0026 26.9 6.9 79 16-116 33-113 (140)
18 PF06157 DUF973: Protein of un 38.0 3.9E+02 0.0085 26.0 10.9 117 101-227 51-170 (285)
19 PF05915 DUF872: Eukaryotic pr 37.4 52 0.0011 27.9 4.0 52 22-73 41-97 (115)
20 PF05653 Mg_trans_NIPA: Magnes 36.9 89 0.0019 30.0 6.0 100 103-223 6-118 (300)
21 PF02038 ATP1G1_PLM_MAT8: ATP1 36.6 38 0.00082 25.6 2.7 28 20-47 9-36 (50)
22 PF12036 DUF3522: Protein of u 36.1 2E+02 0.0043 25.9 7.7 22 104-126 158-179 (186)
23 PF03006 HlyIII: Haemolysin-II 35.0 1.5E+02 0.0032 25.7 6.5 54 95-149 6-59 (222)
24 PRK10642 proline/glycine betai 34.8 2.3E+02 0.005 27.6 8.5 17 240-256 454-470 (490)
25 PF14329 DUF4386: Domain of un 34.8 3.2E+02 0.007 24.1 10.2 95 128-227 76-183 (215)
26 PF00822 PMP22_Claudin: PMP-22 34.6 75 0.0016 26.2 4.5 55 170-224 107-165 (166)
27 PRK12585 putative monovalent c 34.0 66 0.0014 30.2 4.4 56 165-220 4-60 (197)
28 PRK11453 O-acetylserine/cystei 33.4 2.6E+02 0.0057 25.7 8.3 50 100-152 114-163 (299)
29 PRK12586 putative monovalent c 33.4 3.2E+02 0.0069 24.4 8.4 21 95-115 9-29 (145)
30 PF14351 DUF4401: Domain of un 32.1 4.5E+02 0.0098 25.0 12.0 167 19-191 56-232 (326)
31 PF07695 7TMR-DISM_7TM: 7TM di 31.8 2.9E+02 0.0062 22.8 7.5 21 134-154 152-172 (205)
32 PF09656 PGPGW: Putative trans 30.9 1E+02 0.0022 23.3 4.2 33 28-62 3-35 (53)
33 PF05514 HR_lesion: HR-like le 30.5 2E+02 0.0043 25.7 6.6 78 84-184 57-137 (138)
34 PRK15087 hemolysin; Provisiona 30.4 2.2E+02 0.0048 26.1 7.2 26 95-120 16-41 (219)
35 PF13903 Claudin_2: PMP-22/EMP 30.4 2.2E+02 0.0047 23.2 6.5 24 97-120 70-93 (172)
36 PF12351 Fig1: Ca2+ regulator 29.4 95 0.002 27.9 4.5 63 163-225 65-131 (182)
37 KOG4142 Phospholipid methyltra 28.6 1.4E+02 0.0029 28.1 5.5 28 94-121 90-117 (208)
38 PF04971 Lysis_S: Lysis protei 28.3 1.1E+02 0.0024 24.4 4.2 41 175-227 13-54 (68)
39 PF02656 DUF202: Domain of unk 26.9 1.5E+02 0.0033 22.0 4.6 22 98-119 42-63 (73)
40 TIGR02916 PEP_his_kin putative 26.3 4.5E+02 0.0098 27.3 9.3 22 210-231 131-152 (679)
41 TIGR01065 hlyIII channel prote 26.2 4.8E+02 0.01 23.4 12.2 45 171-222 154-200 (204)
42 PRK12361 hypothetical protein; 26.0 1.8E+02 0.0039 29.7 6.4 74 98-182 7-83 (547)
43 PF05462 Dicty_CAR: Slime mold 25.4 4.7E+02 0.01 25.3 8.8 90 92-191 10-102 (303)
44 PF04193 PQ-loop: PQ loop repe 23.9 52 0.0011 23.5 1.6 26 101-126 2-27 (61)
45 KOG4243 Macrophage maturation- 23.7 33 0.00072 33.5 0.7 104 96-207 87-191 (298)
46 PF15103 G0-G1_switch_2: G0/G1 23.4 55 0.0012 27.9 1.8 61 207-267 23-84 (102)
47 COG1030 NfeD Membrane-bound se 22.5 5.9E+02 0.013 26.6 9.2 44 174-222 308-351 (436)
48 COG5336 Uncharacterized protei 22.5 81 0.0018 27.5 2.7 62 157-229 33-95 (116)
49 COG1272 Predicted membrane pro 22.4 2.4E+02 0.0052 26.6 6.0 81 94-176 20-109 (226)
50 COG0471 CitT Di- and tricarbox 22.3 5.2E+02 0.011 26.1 8.7 86 148-235 151-238 (461)
No 1
>PF14145 YrhK: YrhK-like protein
Probab=98.46 E-value=3.1e-07 Score=68.99 Aligned_cols=55 Identities=29% Similarity=0.481 Sum_probs=46.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHhhhccccccccccccccccccchhHHHHHHHHHHHHHhhhhhhhh
Q 047564 165 ILQQSVHIPFLMGSLLLMVGAILNSREQAGWMHHGTELLSTDWAWLGIIGSLLLFIGGLTNVVKV 229 (309)
Q Consensus 165 iLq~~V~ipfLiGSlLFLVgsIln~~~~~~~~~~~~~lLg~~~aW~~I~GSlLfliGgl~NvlKV 229 (309)
.++..-.++.++|+++|++||+++.++. . .....|++++||++|+++.+.|.+|-
T Consensus 3 ~ye~~~~~~d~~~~~~FliGSilfl~~~--~--------~~~g~wlFiiGS~~f~i~~~i~~ir~ 57 (59)
T PF14145_consen 3 RYEIISTVNDFIGGLLFLIGSILFLPES--L--------YTAGTWLFIIGSILFLIRPIIRLIRE 57 (59)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCch--h--------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556899999999999999997762 1 25899999999999999999999874
No 2
>PF14145 YrhK: YrhK-like protein
Probab=98.10 E-value=5e-06 Score=62.53 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=47.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHhhhhHHHHHhhhcceee
Q 047564 93 LVEFAVPVVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLIAGPVLWLLGSIHNSCQ 154 (309)
Q Consensus 93 lvE~~~Pav~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllIaG~~LwllGSihN~cQ 154 (309)
..|.+.-+...+|+++|++||++|++.. .+.-|.|+|++||++++++++.|..+
T Consensus 3 ~ye~~~~~~d~~~~~~FliGSilfl~~~--------~~~~g~wlFiiGS~~f~i~~~i~~ir 56 (59)
T PF14145_consen 3 RYEIISTVNDFIGGLLFLIGSILFLPES--------LYTAGTWLFIIGSILFLIRPIIRLIR 56 (59)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCch--------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888999999999999999999873 36899999999999999999988653
No 3
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=90.50 E-value=4.7 Score=34.07 Aligned_cols=114 Identities=25% Similarity=0.237 Sum_probs=68.0
Q ss_pred hhhcCcccccchhhhhhhHHHHHHHHHHHhhhhhccC-------CCCcchHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 047564 10 TRMYGPRLTRNRAECMNAGLYVFATIVLLGGFAAEFS-------REPKSGLVLLLIALALIMVINVHDLLAHLAGINYWF 82 (309)
Q Consensus 10 ~R~Ygp~la~~RwEyiNAg~Yvfaalll~~G~~a~ls-------~~~~~Gl~l~~val~li~~VN~HDl~AhlAGvdyrl 82 (309)
.+.|+.+..+.| +.+-.++.+|++++..|.+.+.. +..|-++.+..+....+..+-...
T Consensus 19 ~~~~~~~~~~~~--~~~~~l~~lGall~~~gii~fvA~nW~~i~~~~k~~~~~~~~~~~~~~~~~~~~------------ 84 (145)
T PF09925_consen 19 LAFYGERPSRSS--WLARILLYLGALLLGLGIILFVAANWDDIPRLAKLGLLLALLLLSYVGGFWLWR------------ 84 (145)
T ss_pred HHHhhccccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 456776544444 88999999999999999998855 245666666555555555444322
Q ss_pred cccccchhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHhhhhHHHHHhh
Q 047564 83 PLLGFDIQLALVEFAVPVVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLIAGPVLWLLGS 148 (309)
Q Consensus 83 ~l~~~D~Ql~lvE~~~Pav~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllIaG~~LwllGS 148 (309)
+-++ ...=+.-.+++++ +.+++.+.-|..+--.. .-+--..|.+.+-|..|+..|
T Consensus 85 ---~~~~------~~~~~l~~l~~~l-~ga~ialigQ~y~~~~~-~~~~~~~W~~~~l~~~~~~~~ 139 (145)
T PF09925_consen 85 ---RRSP------RLAEALLLLGAVL-FGALIALIGQIYQTGAD-PWQLFLLWALLALPLAYLLRS 139 (145)
T ss_pred ---ccCc------HHHHHHHHHHHHH-HHHHHHHHHhHhcCCCc-hHHHHHHHHHHHHHHHHHHCC
Confidence 1111 2223344566666 44555555565311111 124557788888888888765
No 4
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=74.90 E-value=19 Score=33.74 Aligned_cols=11 Identities=36% Similarity=0.410 Sum_probs=7.4
Q ss_pred hhhhhhhhhcC
Q 047564 247 AHERLMQEREG 257 (309)
Q Consensus 247 AqErL~~~Reg 257 (309)
-.||+.++|+.
T Consensus 138 ~~~~~~~~~~~ 148 (197)
T PRK12585 138 LEERMEWERRE 148 (197)
T ss_pred HHHHHHHHHHH
Confidence 34678887764
No 5
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=68.84 E-value=54 Score=28.36 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=44.7
Q ss_pred hhhhhHHHHHHHHHHHhhhhhccCC--C------CcchHHHHHHHHHHHHHhhh--hhhhhhhh-cccccccccccchhh
Q 047564 23 ECMNAGLYVFATIVLLGGFAAEFSR--E------PKSGLVLLLIALALIMVINV--HDLLAHLA-GINYWFPLLGFDIQL 91 (309)
Q Consensus 23 EyiNAg~Yvfaalll~~G~~a~ls~--~------~~~Gl~l~~val~li~~VN~--HDl~AhlA-Gvdyrl~l~~~D~Ql 91 (309)
|-+|.-.-.+++++++......... . .+.-..+..++..+.+..+. |-+-.|.. .+..+ +.+.|
T Consensus 6 Et~NiwtHll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~--~~~lD--- 80 (222)
T PF03006_consen 6 ETVNIWTHLLGAILFLALLIFLLSLASSPSFSPWDYIPFLIYLLSAILCFLCSTLYHLFSCHSEGKVYHI--FLRLD--- 80 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHH--HHhcc---
Confidence 7889999999999887777665442 1 13345555555555444443 33334433 22222 34445
Q ss_pred hHHHHHhHHHHHHHHHHHH
Q 047564 92 ALVEFAVPVVQTLGSLLFF 110 (309)
Q Consensus 92 ~lvE~~~Pav~~~G~lL~~ 110 (309)
.+.=.+.+.||..-.
T Consensus 81 ----~~gI~l~i~gs~~p~ 95 (222)
T PF03006_consen 81 ----YAGIFLLIAGSYTPF 95 (222)
T ss_pred ----hhhhhHhHhhhhhhH
Confidence 566666666664433
No 6
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=63.32 E-value=9.9 Score=32.26 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=39.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHhhhhHHHHHhhhcc
Q 047564 96 FAVPVVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLIAGPVLWLLGSIHN 151 (309)
Q Consensus 96 ~~~Pav~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllIaG~~LwllGSihN 151 (309)
.++.++-+.|++|.++|++.+.-..+ +...|+.-++|+|.++++=|.-|=
T Consensus 45 ~la~~Lli~G~~li~~g~l~~~~~i~------~~~~~~~~llilG~L~fIPG~Y~~ 94 (115)
T PF05915_consen 45 ALAVFLLIFGTVLIIIGLLLFFGHID------GDRDRGWALLILGILCFIPGFYHT 94 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC------CCCcccchHHHHHHHHHhccHHHH
Confidence 34566778899999999988876654 226788999999999999887664
No 7
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=61.87 E-value=34 Score=29.36 Aligned_cols=86 Identities=17% Similarity=0.391 Sum_probs=60.8
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhhhccC--CCCcchHHHHHHHHHHHHHhhhhhhhh--hhhcccccccccccchhhhHH
Q 047564 19 RNRAECMNAGLYVFATIVLLGGFAAEFS--REPKSGLVLLLIALALIMVINVHDLLA--HLAGINYWFPLLGFDIQLALV 94 (309)
Q Consensus 19 ~~RwEyiNAg~Yvfaalll~~G~~a~ls--~~~~~Gl~l~~val~li~~VN~HDl~A--hlAGvdyrl~l~~~D~Ql~lv 94 (309)
.=|+-|.--.....|+++++.|.+.++. +..|.|+..+.+++.+...-.-|+++- ..+.-+|+.
T Consensus 31 ~M~Ch~tg~a~~~ig~vi~~~~li~~~~k~~~~~~gl~i~~i~~gil~~lip~~lIG~C~~~~M~Ch~------------ 98 (124)
T PF14387_consen 31 HMKCHWTGQAVTGIGAVIAVLSLIMLFVKNKKARIGLSIANIALGILVILIPTVLIGVCMMPTMHCHT------------ 98 (124)
T ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCChhh------------
Confidence 4455666555667778888888777766 367888888888877776666666632 122224443
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 047564 95 EFAVPVVQTLGSLLFFLAILFLF 117 (309)
Q Consensus 95 E~~~Pav~~~G~lL~~vg~iffl 117 (309)
...|++.+.|.++.++|.+-++
T Consensus 99 -~T~p~v~v~~~l~iv~~~~~~f 120 (124)
T PF14387_consen 99 -VTKPAVRVLGGLIIVIGIIYLF 120 (124)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999998754
No 8
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=55.91 E-value=1.3e+02 Score=32.17 Aligned_cols=179 Identities=23% Similarity=0.257 Sum_probs=99.4
Q ss_pred hhhhhcCcccccchhhhhhhHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHhhh--hhhhhhhhccccccccc
Q 047564 8 RETRMYGPRLTRNRAECMNAGLYVFATIVLLGGFAAEFSREPKSGLVLLLIALALIMVINV--HDLLAHLAGINYWFPLL 85 (309)
Q Consensus 8 Re~R~Ygp~la~~RwEyiNAg~Yvfaalll~~G~~a~ls~~~~~Gl~l~~val~li~~VN~--HDl~AhlAGvdyrl~l~ 85 (309)
+=..|||...... ||++..+.-+.-+.-|+.+ ....-|+.++++++.++.-.+. ++-...
T Consensus 345 ~l~emY~iPkY~E----idPt~~~a~~Fp~fFG~M~---gD~gyGlll~l~sl~l~~~~~~~~~~~~~~----------- 406 (660)
T COG1269 345 SLTEMYGIPKYGE----IDPTPFLALFFPLFFGIMF---GDLGYGLLLFLISLLLLRYFKKRLPEGLKK----------- 406 (660)
T ss_pred HHHHHhcCCCCCC----cCCcchHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHhcccccchhHHH-----------
Confidence 3456788776442 7887766655555555544 4556678888888777766652 333333
Q ss_pred ccchhhhHHHHHhHHHHHHHHHHHHHHHHH--HHhh--------hhhhccchhhHHhh------hhHHhhhhHHHHHhhh
Q 047564 86 GFDIQLALVEFAVPVVQTLGSLLFFLAILF--LFIQ--------EEKNYGLFKLEKHA------LNMLIAGPVLWLLGSI 149 (309)
Q Consensus 86 ~~D~Ql~lvE~~~Pav~~~G~lL~~vg~if--fl~q--------~e~~y~~~~le~hg------anllIaG~~LwllGSi 149 (309)
+..-.++.-... ++.|++. ++-. ...-+.+++..+-. .=+++.|-+-=.+|.+
T Consensus 407 ----------l~~~~~~~~i~t-~i~G~l~g~~fG~~~~~~~~p~~~~~~~~~~~~~~~~~~~m~~sl~iG~~hl~~G~~ 475 (660)
T COG1269 407 ----------LGKILLYLGIST-IIWGFLYGEFFGPAVLLSTLPIGLLFVYHGLDEGLLFSNILILSLLIGVLHLSLGLL 475 (660)
T ss_pred ----------HHHHHHHHHHHH-HHHHHHhccccCCccccccCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 332223222222 3334333 1110 00001111111100 1134456666666666
Q ss_pred cceeeeeeecchhhHHHHhhhhhhHHHHHHHHHHHhhhccccccccccccccccccchhHHHHHHHH-HHHHHhhhh
Q 047564 150 HNSCQIYERADGHVQILQQSVHIPFLMGSLLLMVGAILNSREQAGWMHHGTELLSTDWAWLGIIGSL-LLFIGGLTN 225 (309)
Q Consensus 150 hN~cQIYErAdghvQiLq~~V~ipfLiGSlLFLVgsIln~~~~~~~~~~~~~lLg~~~aW~~I~GSl-LfliGgl~N 225 (309)
....|.+-..|-.-.++.+....+.++|-++|+++....- +.+++.-..|+..+|.+ ++++|.+..
T Consensus 476 lg~~~~~~~~~~~~a~~~~~~w~~~~~G~~~~~~~~~~~~----------~~l~~~~~~~~~~~g~~~llvv~~i~~ 542 (660)
T COG1269 476 LGFINRVRSGDIKGAILPQLLWLLIILGLLLLILGYKWSV----------PELLGMVGAMFGAFGILGLLVVGLILV 542 (660)
T ss_pred HHHHHHHhhcchHHHhhhhHHHHHHHHHHHHHHHHhhhcc----------cchhhHHHHHhhhccHHHHHHHHHHHc
Confidence 6777766666666678888888888888888888875553 34556666677777777 555555544
No 9
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=55.90 E-value=2.4e+02 Score=28.74 Aligned_cols=196 Identities=14% Similarity=0.086 Sum_probs=102.6
Q ss_pred hhhhHHHHHHHHHHHh--hhhhccCC--CCcchHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccchh-hhHHHHHh
Q 047564 24 CMNAGLYVFATIVLLG--GFAAEFSR--EPKSGLVLLLIALALIMVINVHDLLAHLAGINYWFPLLGFDIQ-LALVEFAV 98 (309)
Q Consensus 24 yiNAg~Yvfaalll~~--G~~a~ls~--~~~~Gl~l~~val~li~~VN~HDl~AhlAGvdyrl~l~~~D~Q-l~lvE~~~ 98 (309)
.||-|...+=.+++++ -..++.|. -......+..+|..+.+++..==|+-..+-+.-++ +.+.|.. ...|..+.
T Consensus 106 ~ihng~W~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ga~~FiliQlIlLvDFah~wne~w-~~~~e~~~s~~w~~~L 184 (429)
T PF03348_consen 106 AIHNGFWFLKFLLLIGLIVGAFFIPNGSFINVYMYVARVGAFIFILIQLILLVDFAHSWNESW-VEKAEEGNSKRWYIAL 184 (429)
T ss_pred HHHHhhHHHHHHHHHHHHheeEEeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccccCceehhHH
Confidence 4666654433333332 22334554 12344556666666655555444443333332222 2233311 12344444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHh-----hhhHHHHHhhhcceeeeeeecchhhHHHHhhhhhh
Q 047564 99 PVVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLI-----AGPVLWLLGSIHNSCQIYERADGHVQILQQSVHIP 173 (309)
Q Consensus 99 Pav~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllI-----aG~~LwllGSihN~cQIYErAdghvQiLq~~V~ip 173 (309)
-.+-.+--.+.+++.++++.... -..=..|.++ .-.++-.+-|+|-.+|-+.... =+||.++-.-
T Consensus 185 i~~T~~~y~~si~~~v~~y~~f~-------~~~C~lN~~fIt~nliL~vi~s~lSv~p~Vqe~~p~s---gLLqssvv~~ 254 (429)
T PF03348_consen 185 IGVTLLFYAASIAGIVLMYVFFT-------PSGCSLNKFFITFNLILCVIISVLSVLPKVQEANPRS---GLLQSSVVSL 254 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-------CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCc---ccccHHHHHH
Confidence 44444555555666666554331 1122233333 3345667778888887665444 5788888777
Q ss_pred HHHHHHHHHHHhh-hccccccccccccccccccchhHHHHHHHHHHHHHhhhhhhhheeeeecC
Q 047564 174 FLMGSLLLMVGAI-LNSREQAGWMHHGTELLSTDWAWLGIIGSLLLFIGGLTNVVKVFKMQQMD 236 (309)
Q Consensus 174 fLiGSlLFLVgsI-ln~~~~~~~~~~~~~lLg~~~aW~~I~GSlLfliGgl~NvlKVf~mqq~d 236 (309)
|.+ ||.-|. -|.|+..-+ +...-.+....|.-++|.+++++.-+---.|.-.--|.+
T Consensus 255 Y~~----yL~~SAlss~P~~~CN--p~~~~~~~~~~~~~iig~i~~~~~v~yss~ra~~~s~~~ 312 (429)
T PF03348_consen 255 YTT----YLTWSALSSEPDKECN--PSGSRSGSWNTWQSIIGLIFTFVSVLYSSFRASSSSQVG 312 (429)
T ss_pred HHH----HHHHHHHHcCCCcccC--CcccccCCcchHHHHHHHHHHHHHHHHhccccccccchh
Confidence 754 444444 444422112 112335677888999999999999877777766555543
No 10
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=55.46 E-value=47 Score=34.36 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHhhhhHHHHHhhhcceeeeeeecchhhHHHHhhhhhhHHHH
Q 047564 98 VPVVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLIAGPVLWLLGSIHNSCQIYERADGHVQILQQSVHIPFLMG 177 (309)
Q Consensus 98 ~Pav~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllIaG~~LwllGSihN~cQIYErAdghvQiLq~~V~ipfLiG 177 (309)
.|..+ +|-+|+++|++|++.... .-+.--+-+.|-++.++|++.=+-.-|+-..- -.+....+.+.
T Consensus 278 ~~~~~-~gllLiilG~iLiv~E~~--------~p~fGvigl~Gii~~iiG~~~L~~~~~~~~~v-----~~~~~~~~~~~ 343 (436)
T COG1030 278 LGINW-AGLLLIILGAILIVAEAF--------VPGFGVIGLLGIILFIIGLLLLFPSGTMGYLV-----SISLFLTLAIL 343 (436)
T ss_pred cchhH-HHHHHHHHHHHHHHHHHh--------cccchHHHHHHHHHHHHhhhhccCCCCcCccc-----cHHHHHHHHHH
Confidence 45555 777888888888876542 22222344566666666666554444433332 23344555555
Q ss_pred HHHH
Q 047564 178 SLLL 181 (309)
Q Consensus 178 SlLF 181 (309)
|.+|
T Consensus 344 ~~~~ 347 (436)
T COG1030 344 SILF 347 (436)
T ss_pred HHHH
Confidence 5555
No 11
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). There are several classes of these bacterial proteins: they include bacteriorhodopsin and archaerhodopsin, which are light-driven proton pumps; halorhodopsin, a light-driven chloride pump; and sensory rhodopsin, which mediates both photoattractant (in the red) and photophobic (in the UV) responses.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 3QBI_B 3QBK_D 3QBL_D 3QBG_B 3AM6_D 1UAZ_B 1E12_A 2JAF_A 2JAG_A 3UG9_A ....
Probab=49.62 E-value=2e+02 Score=25.93 Aligned_cols=81 Identities=14% Similarity=0.009 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhh---hhHHhhhhHHHHHhhhcceeeeee----ecchhhHHHHhhhhh
Q 047564 100 VVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHA---LNMLIAGPVLWLLGSIHNSCQIYE----RADGHVQILQQSVHI 172 (309)
Q Consensus 100 av~~~G~lL~~vg~iffl~q~e~~y~~~~le~hg---anllIaG~~LwllGSihN~cQIYE----rAdghvQiLq~~V~i 172 (309)
++..++++.++++.++|+....+--.-.++.-|. +-+.|++-.-+...+-.....+.. |.--..--+++.+..
T Consensus 2 ~~~~v~~~~~~~~~l~f~~~~~~~~~~~~R~~~~~~~~i~~iaa~aY~~ma~~~g~~~~~~~~~~~~i~~~RYidW~lT~ 81 (222)
T PF01036_consen 2 TWFWVFAAAMLVSTLFFLLWSRRVTSPRKRYFYYLSALITGIAAIAYFAMASGLGWINVPGEFNHRQIFWARYIDWLLTT 81 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHHHHHHHCTTTEEEEECTTTSEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHccceecccccCCCCcccHHHHhhHHHHH
Confidence 3566788888888888876443210111233343 444466666666666666666666 444455688999999
Q ss_pred hHHHHHHH
Q 047564 173 PFLMGSLL 180 (309)
Q Consensus 173 pfLiGSlL 180 (309)
|.++-.+.
T Consensus 82 Plll~~L~ 89 (222)
T PF01036_consen 82 PLLLLALA 89 (222)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99765443
No 12
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=48.52 E-value=1.8e+02 Score=25.41 Aligned_cols=79 Identities=15% Similarity=0.270 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHhhhhHHHHHhhhcceeeeeeecchhhHHHHhhhhhhHHHHHHH
Q 047564 101 VQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLIAGPVLWLLGSIHNSCQIYERADGHVQILQQSVHIPFLMGSLL 180 (309)
Q Consensus 101 v~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllIaG~~LwllGSihN~cQIYErAdghvQiLq~~V~ipfLiGSlL 180 (309)
-+..|.++.++|.++.....+ .+...-|.-+.+.+++.|...++-+- +..++.|... +.... ..+++|++.
T Consensus 102 ~~~~gi~i~~~Gv~li~~~~~-----~~~~~~G~~~~l~a~~~~a~~~~~~k-~~~~~~~~~~-~~~~~--~~~~~~~~~ 172 (260)
T TIGR00950 102 LVLLAAVLGLAGAVLLLSDGN-----LSINPAGLLLGLGSGISFALGTVLYK-RLVKKEGPEL-LQFTG--WVLLLGALL 172 (260)
T ss_pred HHHHHHHHHHHhHHhhccCCc-----ccccHHHHHHHHHHHHHHHHHHHHHh-HHhhcCCchH-HHHHH--HHHHHHHHH
Confidence 467888899999888653221 12234577788899999998887643 2233333221 11111 345667666
Q ss_pred HHHHhhhc
Q 047564 181 LMVGAILN 188 (309)
Q Consensus 181 FLVgsIln 188 (309)
++.-....
T Consensus 173 l~~~~~~~ 180 (260)
T TIGR00950 173 LLPFAWFL 180 (260)
T ss_pred HHHHHHhc
Confidence 65555543
No 13
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.74 E-value=1.3e+02 Score=26.04 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhh
Q 047564 97 AVPVVQTLGSLLFFLAILFLFIQE 120 (309)
Q Consensus 97 ~~Pav~~~G~lL~~vg~iffl~q~ 120 (309)
+..++=++|.+|+..|+.++....
T Consensus 41 lg~~~lAlg~vL~~~g~~~~~~~~ 64 (191)
T PF04156_consen 41 LGIALLALGVVLLSLGLLCLLSKR 64 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334455678888888888876443
No 14
>PRK10692 hypothetical protein; Provisional
Probab=42.76 E-value=51 Score=27.68 Aligned_cols=19 Identities=32% Similarity=0.739 Sum_probs=12.6
Q ss_pred HHhhhhH-HhhhhHHHHHhh
Q 047564 130 EKHALNM-LIAGPVLWLLGS 148 (309)
Q Consensus 130 e~hganl-lIaG~~LwllGS 148 (309)
-.||+-+ ..+|+++|++|+
T Consensus 42 ~~~gal~~IFiGAllWL~GA 61 (92)
T PRK10692 42 FAHGALLSIFVGALLWLAGA 61 (92)
T ss_pred HHhhHHHHHHHHHHHHHhcc
Confidence 4455443 457888888886
No 15
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=42.49 E-value=1e+02 Score=27.61 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=31.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHhhhhHHHHHhh
Q 047564 95 EFAVPVVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLIAGPVLWLLGS 148 (309)
Q Consensus 95 E~~~Pav~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllIaG~~LwllGS 148 (309)
|.++-..|.+|.++++.|.+.++.+..... -..++-+.-++.++..+=.+.|
T Consensus 2 e~~N~~tH~~g~~~~~~~~~~l~~~~~~~~--~~~~~~~~~vy~~~~~~~~~~S 53 (204)
T TIGR01065 2 EIANAITHGIGAVLSIIALALLVIYSWDHG--GAVAVLGFSIYGISLILLFLVS 53 (204)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999998888765542111 0124455555555554433333
No 16
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=41.02 E-value=52 Score=27.49 Aligned_cols=19 Identities=32% Similarity=0.721 Sum_probs=12.9
Q ss_pred HHhhhh-HHhhhhHHHHHhh
Q 047564 130 EKHALN-MLIAGPVLWLLGS 148 (309)
Q Consensus 130 e~hgan-llIaG~~LwllGS 148 (309)
-.||+- -..+|+++|+.|+
T Consensus 42 ~~~gal~~IFiGAllWL~GA 61 (89)
T PF10762_consen 42 LAHGALFSIFIGALLWLVGA 61 (89)
T ss_pred HHhhHHHHHHHHHHHHHhcc
Confidence 455544 3567888888886
No 17
>PF14927 Neurensin: Neurensin
Probab=40.84 E-value=1.2e+02 Score=26.95 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=43.6
Q ss_pred ccccchhhhhhh-HHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHhhhhhhhh-hhhcccccccccccchhhhH
Q 047564 16 RLTRNRAECMNA-GLYVFATIVLLGGFAAEFSREPKSGLVLLLIALALIMVINVHDLLA-HLAGINYWFPLLGFDIQLAL 93 (309)
Q Consensus 16 ~la~~RwEyiNA-g~Yvfaalll~~G~~a~ls~~~~~Gl~l~~val~li~~VN~HDl~A-hlAGvdyrl~l~~~D~Ql~l 93 (309)
+-..+||+.+.. +..++|+++|+.|.++. .+|-+ +- +...+-..-.....|.|.+-
T Consensus 33 ~~~~~~w~s~~wkV~~i~g~l~Ll~Gi~~l------------~vgY~----------vP~~~e~~~~~~~~~~vD~~a~~ 90 (140)
T PF14927_consen 33 QPSPSRWSSVCWKVGFISGLLLLLLGIVAL------------TVGYL----------VPPKIEVFGEAGEFVVVDSQAAR 90 (140)
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHH------------Hhhcc----------cCCcceeccccccccccchHHHH
Confidence 346789999974 56788888888887752 22211 11 11111110113445666665
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 047564 94 VEFAVPVVQTLGSLLFFLAILFL 116 (309)
Q Consensus 94 vE~~~Pav~~~G~lL~~vg~iff 116 (309)
.--..=.--++|..|+-+|.+++
T Consensus 91 ~n~~Ld~c~laG~~L~~lGg~ll 113 (140)
T PF14927_consen 91 FNNALDTCKLAGLILLCLGGILL 113 (140)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Confidence 55455555566777766665543
No 18
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=37.97 E-value=3.9e+02 Score=26.01 Aligned_cols=117 Identities=21% Similarity=0.173 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh---hhhccchhhHHhhhhHHhhhhHHHHHhhhcceeeeeeecchhhHHHHhhhhhhHHHH
Q 047564 101 VQTLGSLLFFLAILFLFIQE---EKNYGLFKLEKHALNMLIAGPVLWLLGSIHNSCQIYERADGHVQILQQSVHIPFLMG 177 (309)
Q Consensus 101 v~~~G~lL~~vg~iffl~q~---e~~y~~~~le~hganllIaG~~LwllGSihN~cQIYErAdghvQiLq~~V~ipfLiG 177 (309)
+.+.+.++.+++...+-.-+ ++-.+.++.-+-|+.++++|.++-++|.+.-...++.- -.-.+-.++|
T Consensus 51 ~~ii~lvl~iia~~~lr~GF~~L~~~~~~~~iG~tG~~Lilig~il~iig~i~~i~~~~~~---------~~~~~l~~ig 121 (285)
T PF06157_consen 51 SLIIGLVLGIIAFYRLRRGFRILSSYDRDVGIGKTGATLILIGYILIIIGAILAIISLFSI---------LAGLILLLIG 121 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 45566667777765542211 11112335577899999999999999988543322211 1112234556
Q ss_pred HHHHHHHhhhccccccccccccccccccchhHHHHHHHHHHHHHhhhhhh
Q 047564 178 SLLLMVGAILNSREQAGWMHHGTELLSTDWAWLGIIGSLLLFIGGLTNVV 227 (309)
Q Consensus 178 SlLFLVgsIln~~~~~~~~~~~~~lLg~~~aW~~I~GSlLfliGgl~Nvl 227 (309)
.++.++|.|+---.--+...+=.+-+=+..+++.+++- +=++|-++..+
T Consensus 122 ~il~~IG~ILlgi~~yrlG~~y~~~~ikvgGIL~ii~~-l~~IG~iL~yi 170 (285)
T PF06157_consen 122 AILAFIGYILLGIGLYRLGSRYNNGLIKVGGILIIIPI-LSFIGYILMYI 170 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCceehhhHHHHHHH-HHHHHHHHHHh
Confidence 66666666543110000000001223345666666655 44455554443
No 19
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=37.42 E-value=52 Score=27.93 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=39.5
Q ss_pred hhhh--hhHHHHHHHHHHHhhhhhccCC---CCcchHHHHHHHHHHHHHhhhhhhhh
Q 047564 22 AECM--NAGLYVFATIVLLGGFAAEFSR---EPKSGLVLLLIALALIMVINVHDLLA 73 (309)
Q Consensus 22 wEyi--NAg~Yvfaalll~~G~~a~ls~---~~~~Gl~l~~val~li~~VN~HDl~A 73 (309)
|--| =..+.++|+++++.|.+.+... +...+.+++++|.+..+.=-=|-.++
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~ 97 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIA 97 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHH
Confidence 5444 5677888999999998877664 77889999999988877665565555
No 20
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=36.93 E-value=89 Score=29.97 Aligned_cols=100 Identities=24% Similarity=0.360 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHhhh-hhhccchhhHHh-------h-----hhHHhhhhHHHHHhhhcceeeeeeecchhhHHHHhh
Q 047564 103 TLGSLLFFLAILFLFIQE-EKNYGLFKLEKH-------A-----LNMLIAGPVLWLLGSIHNSCQIYERADGHVQILQQS 169 (309)
Q Consensus 103 ~~G~lL~~vg~iffl~q~-e~~y~~~~le~h-------g-----anllIaG~~LwllGSihN~cQIYErAdghvQiLq~~ 169 (309)
.+|.+++++|+++-=.-. =++++|-+.++. + =.+..+|-++..+|.+-|.+. |--|+ .+
T Consensus 6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~A-l~~ap-------~s 77 (300)
T PF05653_consen 6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVA-LGFAP-------AS 77 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHH-HHhhh-------HH
Confidence 467777777776632111 122333222221 1 134566666667777666543 33333 33
Q ss_pred hhhhHHHHHHHHHHHhhhccccccccccccccccccchhHHHHHHHHHHHHHhh
Q 047564 170 VHIPFLMGSLLLMVGAILNSREQAGWMHHGTELLSTDWAWLGIIGSLLLFIGGL 223 (309)
Q Consensus 170 V~ipfLiGSlLFLVgsIln~~~~~~~~~~~~~lLg~~~aW~~I~GSlLfliGgl 223 (309)
+-.|+ |++=++..+++.... +++...+.-+.|.++-++|.+
T Consensus 78 lv~Pl--g~~~lv~~~~~a~~~-----------l~e~~~~~~~~G~~l~i~G~~ 118 (300)
T PF05653_consen 78 LVAPL--GALSLVFNAVLARFF-----------LGEKLTRRDIVGCALIILGSV 118 (300)
T ss_pred HHHHH--HhhhhhhHHHHhHHH-----------hcccchHhHHhhHHHHHhhhe
Confidence 44454 555556666666333 444444555555555555544
No 21
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=36.62 E-value=38 Score=25.57 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.8
Q ss_pred chhhhhhhHHHHHHHHHHHhhhhhccCC
Q 047564 20 NRAECMNAGLYVFATIVLLGGFAAEFSR 47 (309)
Q Consensus 20 ~RwEyiNAg~Yvfaalll~~G~~a~ls~ 47 (309)
.-||-+--|--+||++++++|.+..+|.
T Consensus 9 YDy~tLrigGLi~A~vlfi~Gi~iils~ 36 (50)
T PF02038_consen 9 YDYETLRIGGLIFAGVLFILGILIILSG 36 (50)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cchhHhhccchHHHHHHHHHHHHHHHcC
Confidence 5688898999999999999999987774
No 22
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=36.15 E-value=2e+02 Score=25.89 Aligned_cols=22 Identities=27% Similarity=0.709 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhccc
Q 047564 104 LGSLLFFLAILFLFIQEEKNYGL 126 (309)
Q Consensus 104 ~G~lL~~vg~iffl~q~e~~y~~ 126 (309)
.|.+++++|+.. +-+.+++|++
T Consensus 158 ~g~~~~~~Gl~~-f~et~dnY~~ 179 (186)
T PF12036_consen 158 PGIIFFILGLDL-FLETNDNYRI 179 (186)
T ss_pred HHHHHHHHHHhH-hhcCCCcEEE
Confidence 466677777776 4466666755
No 23
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=34.96 E-value=1.5e+02 Score=25.73 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=40.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHhhhhHHHHHhhh
Q 047564 95 EFAVPVVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLIAGPVLWLLGSI 149 (309)
Q Consensus 95 E~~~Pav~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllIaG~~LwllGSi 149 (309)
|.++--.|.+|+++++...+++...... .+.-..++-..+++..+..+..+.|.
T Consensus 6 Et~NiwtHll~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~St 59 (222)
T PF03006_consen 6 ETVNIWTHLLGAILFLALLIFLLSLASS-PSFSPWDYIPFLIYLLSAILCFLCST 59 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhHH
Confidence 7888899999999998888887766532 21124577888888888888777764
No 24
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=34.82 E-value=2.3e+02 Score=27.61 Aligned_cols=17 Identities=6% Similarity=0.071 Sum_probs=8.5
Q ss_pred ccccccchhhhhhhhhc
Q 047564 240 LEKLRGGAHERLMQERE 256 (309)
Q Consensus 240 lEkLRGGAqErL~~~Re 256 (309)
|+|+|+..|+.+.+.++
T Consensus 454 l~~~~~~~~~~~~~i~~ 470 (490)
T PRK10642 454 LVEHYDNIEQKIDDIDQ 470 (490)
T ss_pred hhcccccccchhhhccc
Confidence 45666555544444443
No 25
>PF14329 DUF4386: Domain of unknown function (DUF4386)
Probab=34.79 E-value=3.2e+02 Score=24.09 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=54.4
Q ss_pred hhHHhhhhHHhhhhHHHHHhhhccee--ee-----ee------ecchhhHHHHhhhhhhHHHHHHHHHHHhhhccccccc
Q 047564 128 KLEKHALNMLIAGPVLWLLGSIHNSC--QI-----YE------RADGHVQILQQSVHIPFLMGSLLLMVGAILNSREQAG 194 (309)
Q Consensus 128 ~le~hganllIaG~~LwllGSihN~c--QI-----YE------rAdghvQiLq~~V~ipfLiGSlLFLVgsIln~~~~~~ 194 (309)
.+..-++.+=+++.++..+|-+.+.. .+ |. +...-+|.+.+.=..-+.+|-+.|-+..++--- --
T Consensus 76 ~la~~~~~~~li~~~i~~~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~i~~g~~~lllg~--l~ 153 (215)
T PF14329_consen 76 PLALLAAAFRLIAAAILAIGLLRLLAVLPLLASPAAAPGFSAAQAQALVQLLLDLHGYGEHIGLIFFGLWLLLLGY--LL 153 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 55666666667777777777665543 22 21 222233344444444466665444443333211 00
Q ss_pred cccccccccccchhHHHHHHHHHHHHHhhhhhh
Q 047564 195 WMHHGTELLSTDWAWLGIIGSLLLFIGGLTNVV 227 (309)
Q Consensus 195 ~~~~~~~lLg~~~aW~~I~GSlLfliGgl~Nvl 227 (309)
. ...++.|-.+|.+++++...+++.+.+..
T Consensus 154 ~---rs~~~Pr~l~~lg~v~g~~~l~~~~~~~~ 183 (215)
T PF14329_consen 154 L---RSRLLPRWLGALGLVAGIGYLADSLLALL 183 (215)
T ss_pred H---HcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12467788899999999999988877654
No 26
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=34.62 E-value=75 Score=26.22 Aligned_cols=55 Identities=18% Similarity=0.415 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHHHhhhccccccccc-cccccccccchhH---HHHHHHHHHHHHhhh
Q 047564 170 VHIPFLMGSLLLMVGAILNSREQAGWM-HHGTELLSTDWAW---LGIIGSLLLFIGGLT 224 (309)
Q Consensus 170 V~ipfLiGSlLFLVgsIln~~~~~~~~-~~~~~lLg~~~aW---~~I~GSlLfliGgl~ 224 (309)
..+-++++.++.+++.+.+-....... ++.......+++| ++-+++.+.++||++
T Consensus 107 ag~l~~~agl~~l~~~~~y~~~~~~~~~~~~~~~~~~~~G~s~~lgW~~~~l~~~~G~l 165 (166)
T PF00822_consen 107 AGILFILAGLCLLIAVSWYTAVIVQEFSDPSRPNIKYEFGWSFYLGWVAFILLLLSGIL 165 (166)
T ss_pred ceeeeHHHhhhhheeEEEEeccCchhhccccCCCCcEEehHHHHHHHHHHHHHHHHHHh
Confidence 445566666666666666644322211 1111123455666 556678888888875
No 27
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=34.00 E-value=66 Score=30.19 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=31.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHhhhccccccc-cccccccccccchhHHHHHHHHHHHH
Q 047564 165 ILQQSVHIPFLMGSLLLMVGAILNSREQAG-WMHHGTELLSTDWAWLGIIGSLLLFI 220 (309)
Q Consensus 165 iLq~~V~ipfLiGSlLFLVgsIln~~~~~~-~~~~~~~lLg~~~aW~~I~GSlLfli 220 (309)
++.-.+.+-.++|++++++|+|=-.+.... .--|...--++-++++.++|+++++.
T Consensus 4 i~eiI~~vLLliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l~~~ 60 (197)
T PRK12585 4 IIEIIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVGYFF 60 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHHHHH
Confidence 345566777888888888887744443211 11222222333445677777766544
No 28
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=33.39 E-value=2.6e+02 Score=25.73 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHhhhhHHHHHhhhcce
Q 047564 100 VVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLIAGPVLWLLGSIHNS 152 (309)
Q Consensus 100 av~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllIaG~~LwllGSihN~ 152 (309)
.-+.+|+++.++|..+++....++. +..--|.-+.+.+++.|-+.++..-
T Consensus 114 ~~~~~~~~l~~~Gv~ll~~~~~~~~---~~~~~G~~l~l~aal~~a~~~v~~~ 163 (299)
T PRK11453 114 GKQLAGIALAIFGVLVLIEDSLNGQ---HVAMLGFMLTLAAAFSWACGNIFNK 163 (299)
T ss_pred HHHHHHHHHHHHhHHHhccccCCCc---chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999887763211111 1111377778888999999888654
No 29
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=33.37 E-value=3.2e+02 Score=24.42 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=9.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 047564 95 EFAVPVVQTLGSLLFFLAILF 115 (309)
Q Consensus 95 E~~~Pav~~~G~lL~~vg~if 115 (309)
|++.-+.-.+|++++++|.+=
T Consensus 9 ~il~~ill~lG~~f~ligaIG 29 (145)
T PRK12586 9 SLIAAIMILLGSIIALISAIG 29 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 30
>PF14351 DUF4401: Domain of unknown function (DUF4401)
Probab=32.07 E-value=4.5e+02 Score=25.00 Aligned_cols=167 Identities=19% Similarity=0.151 Sum_probs=78.4
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhhhccCCCCcc--hHHHHHHHHHHHHHhhhhhhhh-hhhcc-------cccccccccc
Q 047564 19 RNRAECMNAGLYVFATIVLLGGFAAEFSREPKS--GLVLLLIALALIMVINVHDLLA-HLAGI-------NYWFPLLGFD 88 (309)
Q Consensus 19 ~~RwEyiNAg~Yvfaalll~~G~~a~ls~~~~~--Gl~l~~val~li~~VN~HDl~A-hlAGv-------dyrl~l~~~D 88 (309)
..-+|-+.-..++.|..++..|+.-......-. ...+....+....--+.|++.. ....+ ++..+-..+|
T Consensus 56 ~~f~~q~ala~~laG~~~~~~gl~~~~~~~~~~~l~~~~i~~~~~~l~~~~l~rfLs~~~~~~~l~~~l~~~~~~~~~~~ 135 (326)
T PF14351_consen 56 GDFLDQLALALFLAGQILLGFGLFDLFMSSLSVWLIFALILAVLYFLMPDRLLRFLSAFLAAIALIGLLAYLLLPGLYYY 135 (326)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Confidence 456888888899999999988888776221112 2222222333444445666663 11111 1111111122
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHhhhhHHHHHhhhcceeeeeeecchhhHHHHh
Q 047564 89 IQLALVEFAVPVVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLIAGPVLWLLGSIHNSCQIYERADGHVQILQQ 168 (309)
Q Consensus 89 ~Ql~lvE~~~Pav~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllIaG~~LwllGSihN~cQIYErAdghvQiLq~ 168 (309)
+ ..+..+.+-+. +..............+++. +++.-+--++.++.+.+...+.++.|....+...+...+-..+
T Consensus 136 ~----~~l~~~~~~~~-~~~l~l~~~~~~~~~~~~~-~~~~~~p~~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (326)
T PF14351_consen 136 N----LWLALLLLAAL-LVWLWLNEALFEIRLRAPR-RSALLEPLAYGLLLSLLGILLVSIFNSLFMFLTPQFFQSSWFY 209 (326)
T ss_pred H----HHHHHHHHHHH-HHHHHHhhHHhHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhhh
Confidence 1 22222222222 2222222221111112222 2244455566677777777777777777776333333333334
Q ss_pred hhhhhHHHHHHHHHHHhhhcccc
Q 047564 169 SVHIPFLMGSLLLMVGAILNSRE 191 (309)
Q Consensus 169 ~V~ipfLiGSlLFLVgsIln~~~ 191 (309)
.+.+....-+...++-++..+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~ 232 (326)
T PF14351_consen 210 ALWILYLLLIIALLLFYVLWRRR 232 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555444
No 31
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=31.76 E-value=2.9e+02 Score=22.84 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=11.2
Q ss_pred hhHHhhhhHHHHHhhhcceee
Q 047564 134 LNMLIAGPVLWLLGSIHNSCQ 154 (309)
Q Consensus 134 anllIaG~~LwllGSihN~cQ 154 (309)
++.++.|-.++++++++++..
T Consensus 152 a~~~~~~~~~~~~~~~~~~l~ 172 (205)
T PF07695_consen 152 ARYFLIGWLLFLLSSLIDILR 172 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555543
No 32
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=30.88 E-value=1e+02 Score=23.27 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHH
Q 047564 28 GLYVFATIVLLGGFAAEFSREPKSGLVLLLIALAL 62 (309)
Q Consensus 28 g~Yvfaalll~~G~~a~ls~~~~~Gl~l~~val~l 62 (309)
+..+.|.+++++|++...-+. .|+.+.++|+++
T Consensus 3 ~v~v~G~~lv~~Gii~~~lPG--pG~l~i~~GL~i 35 (53)
T PF09656_consen 3 GVGVLGWVLVVAGIIMLPLPG--PGLLVIFLGLAI 35 (53)
T ss_pred hhhhHHHHHHHHHHHhhcCCC--CcHHHHHHHHHH
Confidence 567889999999998743334 488888888875
No 33
>PF05514 HR_lesion: HR-like lesion-inducing ; InterPro: IPR008637 This is a family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens.
Probab=30.49 E-value=2e+02 Score=25.65 Aligned_cols=78 Identities=28% Similarity=0.443 Sum_probs=44.8
Q ss_pred ccccchhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHhhhhHHHHHhhhcceeeeeeecc---
Q 047564 84 LLGFDIQLALVEFAVPVVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLIAGPVLWLLGSIHNSCQIYERAD--- 160 (309)
Q Consensus 84 l~~~D~Ql~lvE~~~Pav~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllIaG~~LwllGSihN~cQIYErAd--- 160 (309)
+...|.+ -+..+.-+++-+|++||+.|+-|-- | =| -+-+.++-|++ | +.|..+.
T Consensus 57 vp~~~~k--~lv~~~i~lkglGgiLFi~gss~GA------~---LL---ll~l~~~Tpi~------~---dFyn~~~~~~ 113 (138)
T PF05514_consen 57 VPHIDVK--HLVAAAIALKGLGGILFIFGSSFGA------Y---LL---LLYLAIVTPIL------Y---DFYNYDSESA 113 (138)
T ss_pred CCCccHH--HHHHHHHHHHHHHHHHHHhcchhHH------H---HH---HHHHHHHHHHh------h---hhhccCCChh
Confidence 4445544 4667788899999999999986621 0 00 01122233332 2 3333322
Q ss_pred hhhHHHHhhhhhhHHHHHHHHHHH
Q 047564 161 GHVQILQQSVHIPFLMGSLLLMVG 184 (309)
Q Consensus 161 ghvQiLq~~V~ipfLiGSlLFLVg 184 (309)
.-+|.+.+-.|=-=++|.+||-+|
T Consensus 114 e~~~~l~~F~qnlAL~GALLfFlg 137 (138)
T PF05514_consen 114 EFVQLLIMFLQNLALFGALLFFLG 137 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344466666666678888888765
No 34
>PRK15087 hemolysin; Provisional
Probab=30.41 E-value=2.2e+02 Score=26.06 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=22.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhh
Q 047564 95 EFAVPVVQTLGSLLFFLAILFLFIQE 120 (309)
Q Consensus 95 E~~~Pav~~~G~lL~~vg~iffl~q~ 120 (309)
|.++-..|.+|.+++++|..++..+.
T Consensus 16 E~~N~~tH~ig~~~a~~~~~~l~~~~ 41 (219)
T PRK15087 16 EIANSISHGIGLVFGIVGLVLLLVQA 41 (219)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999888887654
No 35
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=30.41 E-value=2.2e+02 Score=23.19 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=15.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhh
Q 047564 97 AVPVVQTLGSLLFFLAILFLFIQE 120 (309)
Q Consensus 97 ~~Pav~~~G~lL~~vg~iffl~q~ 120 (309)
.+-+.-++|.++.++|.++.....
T Consensus 70 ~~~~~~~l~~~~~~~a~~~~~~~~ 93 (172)
T PF13903_consen 70 ATIAFLILGLLLLLFAFVFALIGF 93 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445677777777777765444
No 36
>PF12351 Fig1: Ca2+ regulator and membrane fusion protein Fig1
Probab=29.42 E-value=95 Score=27.88 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=37.1
Q ss_pred hHHHHhhhhhh-HHHHHHHHHHHhhhcccccc--ccccccccc-cccchhHHHHHHHHHHHHHhhhh
Q 047564 163 VQILQQSVHIP-FLMGSLLLMVGAILNSREQA--GWMHHGTEL-LSTDWAWLGIIGSLLLFIGGLTN 225 (309)
Q Consensus 163 vQiLq~~V~ip-fLiGSlLFLVgsIln~~~~~--~~~~~~~~l-Lg~~~aW~~I~GSlLfliGgl~N 225 (309)
+|-+|+.+-.| +++.++.|.+.+.+..-..+ -...|++.. +.+..-.+..+.+++|++|++..
T Consensus 65 A~~f~~~iv~p~ll~~aiiL~~~~~lll~~~~~~~~~~P~~~~~v~~~~l~l~~~~~~l~~~~a~~q 131 (182)
T PF12351_consen 65 AQTFQDNIVFPYLLMAAIILFLLCFLLLAYFPGSIPVLPFPSRAVSKVALGLSFLSVLLWLVGAMWQ 131 (182)
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHccCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788666666 44555544444444332222 223444444 66666667778899999998854
No 37
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=28.63 E-value=1.4e+02 Score=28.08 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 047564 94 VEFAVPVVQTLGSLLFFLAILFLFIQEE 121 (309)
Q Consensus 94 vE~~~Pav~~~G~lL~~vg~iffl~q~e 121 (309)
=-+-.|+.|.+|-+||-+|.++.++.+.
T Consensus 90 ~~~~~p~~~~lg~alfglG~VLVLSSmy 117 (208)
T KOG4142|consen 90 ESLDTPAAYSLGLALFGLGVVLVLSSMY 117 (208)
T ss_pred hhccChHHHHHHHHHHhhhHHHHHHHHH
Confidence 3367899999999999999999999984
No 38
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=28.34 E-value=1.1e+02 Score=24.39 Aligned_cols=41 Identities=27% Similarity=0.467 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccchhHHHHHHHHHH-HHHhhhhhh
Q 047564 175 LMGSLLLMVGAILNSREQAGWMHHGTELLSTDWAWLGIIGSLLL-FIGGLTNVV 227 (309)
Q Consensus 175 LiGSlLFLVgsIln~~~~~~~~~~~~~lLg~~~aW~~I~GSlLf-liGgl~Nvl 227 (309)
..||+.|-....++.. -...|++.+++||++| +++-++|+.
T Consensus 13 Sag~~~~wl~~lld~~------------sp~qW~aIGvi~gi~~~~lt~ltN~Y 54 (68)
T PF04971_consen 13 SAGSAGYWLLQLLDQF------------SPSQWAAIGVIGGIFFGLLTYLTNLY 54 (68)
T ss_pred chhhHHHHHHHHHhcc------------CcccchhHHHHHHHHHHHHHHHhHhh
Confidence 3466666666666622 2447999999999986 667788875
No 39
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=26.85 E-value=1.5e+02 Score=22.02 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 047564 98 VPVVQTLGSLLFFLAILFLFIQ 119 (309)
Q Consensus 98 ~Pav~~~G~lL~~vg~iffl~q 119 (309)
......+|.+++.+|++.+...
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
T PF02656_consen 42 RRVSKVLGLLLIVLGLLTLIYG 63 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888777644
No 40
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=26.29 E-value=4.5e+02 Score=27.27 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhee
Q 047564 210 LGIIGSLLLFIGGLTNVVKVFK 231 (309)
Q Consensus 210 ~~I~GSlLfliGgl~NvlKVf~ 231 (309)
..+.+.+++.+.|++|+.+.|.
T Consensus 131 ~~~~~~~~~~~~~l~~~~~~~r 152 (679)
T TIGR02916 131 YFLLGFLLLAVIGLVLVEQLYR 152 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777778888888776
No 41
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=26.21 E-value=4.8e+02 Score=23.39 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHhhhccccccccccccccccccchhH--HHHHHHHHHHHHh
Q 047564 171 HIPFLMGSLLLMVGAILNSREQAGWMHHGTELLSTDWAW--LGIIGSLLLFIGG 222 (309)
Q Consensus 171 ~ipfLiGSlLFLVgsIln~~~~~~~~~~~~~lLg~~~aW--~~I~GSlLfliGg 222 (309)
..-++.|-++..+|++.+-.+.|+.-.+ --.| +.++|+++...+-
T Consensus 154 ~~~l~~gg~~Y~~G~~fY~~~~p~~~~~-------H~iwH~fV~~g~~~h~~~i 200 (204)
T TIGR01065 154 FSLLAAGGLLYTVGAIFYALKWPIPFTY-------HAIWHLFVLGASACHFVAI 200 (204)
T ss_pred HHHHHHHhHHHHcchHheeecCCCCCCc-------ChHHHHHHHHHHHHHHHHH
Confidence 3445677788888888887766654321 3456 6677777776654
No 42
>PRK12361 hypothetical protein; Provisional
Probab=26.05 E-value=1.8e+02 Score=29.66 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHhhhhHHHHH--hhhcceeeeee-ecchhhHHHHhhhhhhH
Q 047564 98 VPVVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLIAGPVLWLL--GSIHNSCQIYE-RADGHVQILQQSVHIPF 174 (309)
Q Consensus 98 ~Pav~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllIaG~~Lwll--GSihN~cQIYE-rAdghvQiLq~~V~ipf 174 (309)
...-|.+|++++++ .++.+++. --++|++-.+-.|.++ +...|...+|. |+||+....=...-.||
T Consensus 7 ~~~~y~~ga~~~~~-~~~~~~~~----------~~~~~~~w~~~~~~~v~~~y~~~~~~~f~k~~~g~~~~~~~~l~~P~ 75 (547)
T PRK12361 7 IKYYYLAGALLLLY-LAVTGPSI----------LLTFLFAWISLSLFLVGSAYWFNLASIFRKRQDGTIPWYIRWVFIPF 75 (547)
T ss_pred HHHHHHHHHHHHHH-HHHHccHH----------HHHHHHHHHHHHHHHHHHHHHhcccHhhCCCCCCcchHHHHHHHHHH
Confidence 34568899876666 44444321 1233555444444443 34567778876 55999999999999999
Q ss_pred HHHHHHHH
Q 047564 175 LMGSLLLM 182 (309)
Q Consensus 175 LiGSlLFL 182 (309)
++|.-+.-
T Consensus 76 l~~~~~~~ 83 (547)
T PRK12361 76 LLGTRLYN 83 (547)
T ss_pred HHHHHHHH
Confidence 99988755
No 43
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=25.36 E-value=4.7e+02 Score=25.33 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=49.4
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhH---HhhhhHHHHHhhhcceeeeeeecchhhHHHHh
Q 047564 92 ALVEFAVPVVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNM---LIAGPVLWLLGSIHNSCQIYERADGHVQILQQ 168 (309)
Q Consensus 92 ~lvE~~~Pav~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganl---lIaG~~LwllGSihN~cQIYErAdghvQiLq~ 168 (309)
..+|..+.++-++||+..++....+ . .+ .++.-.+ +..+.++--++++.....-....|+..-.+|.
T Consensus 10 ~~i~~~~s~lSllGclfiI~tf~~~--k---~~-----r~~~~rli~yl~~~~ll~~v~~~~~~~~~~~~~~s~lC~~Qa 79 (303)
T PF05462_consen 10 YAIELVASVLSLLGCLFIIITFCLF--K---RL-----RKPINRLIFYLSIANLLTNVASMIMTLSPSAGENSFLCQFQA 79 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H---Hh-----CccHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHh
Confidence 3577778888888887766665544 1 11 2332222 22343333333322222222344455557777
Q ss_pred hhhhhHHHHHHHHHHHhhhcccc
Q 047564 169 SVHIPFLMGSLLLMVGAILNSRE 191 (309)
Q Consensus 169 ~V~ipfLiGSlLFLVgsIln~~~ 191 (309)
...-=+.+.|.+....=..|...
T Consensus 80 fliq~f~~as~lWt~~iA~nly~ 102 (303)
T PF05462_consen 80 FLIQFFMLASFLWTLCIAFNLYL 102 (303)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhh
Confidence 77666777887777766666654
No 44
>PF04193 PQ-loop: PQ loop repeat
Probab=23.89 E-value=52 Score=23.50 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccc
Q 047564 101 VQTLGSLLFFLAILFLFIQEEKNYGL 126 (309)
Q Consensus 101 v~~~G~lL~~vg~iffl~q~e~~y~~ 126 (309)
.++.|-+-.++..+-++||.-+.|+.
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ 27 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKR 27 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHc
Confidence 46778888888899999999888844
No 45
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]
Probab=23.66 E-value=33 Score=33.51 Aligned_cols=104 Identities=10% Similarity=0.059 Sum_probs=58.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHhhh-hHHHHHhhhcceeeeeeecchhhHHHHhhhhhhH
Q 047564 96 FAVPVVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLIAG-PVLWLLGSIHNSCQIYERADGHVQILQQSVHIPF 174 (309)
Q Consensus 96 ~~~Pav~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllIaG-~~LwllGSihN~cQIYErAdghvQiLq~~V~ipf 174 (309)
.++-+.|+++-+=+++|+..|. .|++-+.|+--+|+.=.| -+|+...++-.+|.--.+.....|-++.+.++|=
T Consensus 87 vAN~~tHai~I~PaIl~~~~l~-----~~s~~d~q~i~awIYG~~lc~LFt~STvfH~~~~~~~hqn~~r~l~~~lH~cD 161 (298)
T KOG4243|consen 87 VANCYTHAIWIVPAILGSALLH-----RLSDDDWQKITAWIYGMGLCALFTVSTVFHIVSWKKSHQNKLRTLEHCLHMCD 161 (298)
T ss_pred HHhhHhhHhhhhHHHHHHHHHH-----HhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777777777777664 245556666666665333 3556666655555543343344566677777766
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccch
Q 047564 175 LMGSLLLMVGAILNSREQAGWMHHGTELLSTDW 207 (309)
Q Consensus 175 LiGSlLFLVgsIln~~~~~~~~~~~~~lLg~~~ 207 (309)
=+---+|+.||-. -|-..-++|+-++...|
T Consensus 162 Ra~IY~FIAaSY~---PWLtLr~~g~~~~~m~W 191 (298)
T KOG4243|consen 162 RAVIYFFIAASYA---PWLTLRELGPLASHMRW 191 (298)
T ss_pred hhHhhhhhhhccc---ccccHHhhCcHHHHHHH
Confidence 5555566666532 23223345555555444
No 46
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=23.41 E-value=55 Score=27.94 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhheeeeecCcccccccccchhhhhhhhhcC-CCCcchHHHh
Q 047564 207 WAWLGIIGSLLLFIGGLTNVVKVFKMQQMDGLRLEKLRGGAHERLMQEREG-QVPLIIEEQR 267 (309)
Q Consensus 207 ~aW~~I~GSlLfliGgl~NvlKVf~mqq~d~~rlEkLRGGAqErL~~~Reg-~~Pl~~e~~~ 267 (309)
.+=+|++||+|-|+|-++-++...-.-=.++-+++.=.-=|.+|-.++|+- +.+.++|...
T Consensus 23 mvKlYvLGSvLA~~Gvv~GLVEtVCsPFs~~~~ld~e~~~a~~~~a~e~~~~~~~~~~ek~k 84 (102)
T PF15103_consen 23 MVKLYVLGSVLAFFGVVIGLVETVCSPFSAASRLDEEAALAELRAARERQALRKQAVLEKGK 84 (102)
T ss_pred eEeeehhhhHHHHHHHHHHHHHHHhCccccCCCcCHHHHHHHHHHHHHHhccchhhhhhhcc
Confidence 344689999999999999999887777666666642221344455555555 4445555543
No 47
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=22.51 E-value=5.9e+02 Score=26.63 Aligned_cols=44 Identities=23% Similarity=0.133 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccchhHHHHHHHHHHHHHh
Q 047564 174 FLMGSLLLMVGAILNSREQAGWMHHGTELLSTDWAWLGIIGSLLLFIGG 222 (309)
Q Consensus 174 fLiGSlLFLVgsIln~~~~~~~~~~~~~lLg~~~aW~~I~GSlLfliGg 222 (309)
-+.|-.+|++|.++-.+..- ....+..+..|..-++|..|-+..
T Consensus 308 gl~Gii~~iiG~~~L~~~~~-----~~~~v~~~~~~~~~~~~~~~~v~~ 351 (436)
T COG1030 308 GLLGIILFIIGLLLLFPSGT-----MGYLVSISLFLTLAILSILFKVFL 351 (436)
T ss_pred HHHHHHHHHHhhhhccCCCC-----cCccccHHHHHHHHHHHHHHHHHH
Confidence 46677888888877644321 124566777777777777764433
No 48
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.49 E-value=81 Score=27.49 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=39.0
Q ss_pred eecchhhHHHHhhhhhhH-HHHHHHHHHHhhhccccccccccccccccccchhHHHHHHHHHHHHHhhhhhhhh
Q 047564 157 ERADGHVQILQQSVHIPF-LMGSLLLMVGAILNSREQAGWMHHGTELLSTDWAWLGIIGSLLLFIGGLTNVVKV 229 (309)
Q Consensus 157 ErAdghvQiLq~~V~ipf-LiGSlLFLVgsIln~~~~~~~~~~~~~lLg~~~aW~~I~GSlLfliGgl~NvlKV 229 (309)
++++...+..++.+-+.- +|+.+ +||+.+.+..... -.+--|.-|+.-++=+.+|++|++|-
T Consensus 33 ~~~a~s~k~~~~a~klssefIsGi--lVGa~iG~llD~~---------agTsPwglIv~lllGf~AG~lnv~Rs 95 (116)
T COG5336 33 KSSAESIKGYAQAFKLSSEFISGI--LVGAGIGWLLDKF---------AGTSPWGLIVFLLLGFGAGVLNVLRS 95 (116)
T ss_pred cccchhhhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHh---------cCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566665554431 22222 4677666553221 22456999999999999999999984
No 49
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=22.45 E-value=2.4e+02 Score=26.65 Aligned_cols=81 Identities=19% Similarity=0.241 Sum_probs=50.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhhhhhccchhhHHhhhhHHhhhhHHHHHhh-hcceeeeeeecchhhH--------
Q 047564 94 VEFAVPVVQTLGSLLFFLAILFLFIQEEKNYGLFKLEKHALNMLIAGPVLWLLGS-IHNSCQIYERADGHVQ-------- 164 (309)
Q Consensus 94 vE~~~Pav~~~G~lL~~vg~iffl~q~e~~y~~~~le~hganllIaG~~LwllGS-ihN~cQIYErAdghvQ-------- 164 (309)
=|.++...|.+|.++++++.+++.++... . .-..+.-+.+++.++-.+-.+.| +-|+..-=+|+.-+-|
T Consensus 20 ~e~~n~~tHlvGail~i~~l~~l~~~a~~-~-~~~~~~~~~~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~~I~ 97 (226)
T COG1272 20 EEIANAITHLIGAILAIVGLVLLLVYALI-T-GSALAVIVFSIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHSGIY 97 (226)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CChhHhhhhhHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHHHHH
Confidence 37889999999999999999999988764 2 11345566667666665544443 3344432244444444
Q ss_pred HHHhhhhhhHHH
Q 047564 165 ILQQSVHIPFLM 176 (309)
Q Consensus 165 iLq~~V~ipfLi 176 (309)
+|=...++|+++
T Consensus 98 vLIAgSyTP~~l 109 (226)
T COG1272 98 VLIAGSYTPFLL 109 (226)
T ss_pred HHHHHhhHHHhH
Confidence 333455666654
No 50
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]
Probab=22.29 E-value=5.2e+02 Score=26.10 Aligned_cols=86 Identities=16% Similarity=0.092 Sum_probs=65.0
Q ss_pred hhcceeeeeeecch--hhHHHHhhhhhhHHHHHHHHHHHhhhccccccccccccccccccchhHHHHHHHHHHHHHhhhh
Q 047564 148 SIHNSCQIYERADG--HVQILQQSVHIPFLMGSLLLMVGAILNSREQAGWMHHGTELLSTDWAWLGIIGSLLLFIGGLTN 225 (309)
Q Consensus 148 SihN~cQIYErAdg--hvQiLq~~V~ipfLiGSlLFLVgsIln~~~~~~~~~~~~~lLg~~~aW~~I~GSlLfliGgl~N 225 (309)
-+...++.+++... -.+.+...+...=-+||.++.+|+-.|.-.+.-...++ +-...|.++.+-=.++.+....+-
T Consensus 151 iv~~~~~~~~~~~~~~~~~~l~~~i~~~~~ig~~~~~ig~~~N~i~~~~~~~~~--~~~~~w~~~~~p~~iv~l~~~~li 228 (461)
T COG0471 151 LILSLSPLLGSPPRDKIGKRLILGIALAANIGSALTPIGNPPNIIAAGLLNPIS--LSWGEWFLAMLPLGILLLLLLLLL 228 (461)
T ss_pred hhhcchhhcCCChHHHHHHHHHHHHHHHhHhhcccccccCCccHHHHHhhcccC--CCHHHHHHHHhhHHHHHHHHHHHH
Confidence 34556677766666 36688889999999999999999999976544333222 445677888888888888889999
Q ss_pred hhhheeeeec
Q 047564 226 VVKVFKMQQM 235 (309)
Q Consensus 226 vlKVf~mqq~ 235 (309)
..++|+.++.
T Consensus 229 ~~~~~~~~~~ 238 (461)
T COG0471 229 LYKLFPPREI 238 (461)
T ss_pred HHhhcChHhh
Confidence 9999998654
Done!