Query 047564
Match_columns 309
No_of_seqs 32 out of 34
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 21:45:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m0k_A BR, bacteriorhodopsin; 71.1 11 0.00039 34.1 7.5 76 103-179 27-110 (262)
2 1xio_A Anabaena sensory rhodop 52.3 1.2E+02 0.004 27.4 10.5 78 104-182 10-90 (261)
3 2l6x_A GPR, green-light absorb 45.2 1.6E+02 0.0056 26.0 10.9 104 103-224 17-123 (243)
4 3ddl_A Xanthorhodopsin; carote 45.2 92 0.0031 28.3 8.7 46 102-148 20-68 (273)
5 2ei4_A AR 2, archaerhodopsin-2 37.5 2.2E+02 0.0076 25.3 10.4 75 104-179 19-102 (253)
6 2jp3_A FXYD domain-containing 32.5 30 0.001 26.4 2.8 29 19-47 11-39 (67)
7 2zxe_G FXYD10, phospholemman-l 31.4 30 0.001 26.9 2.7 29 19-47 13-41 (74)
8 2jo1_A Phospholemman; FXYD1, N 29.3 26 0.00088 27.1 2.0 27 20-46 11-37 (72)
9 3qap_A Sensory rhodopsin-2; ph 23.2 3.9E+02 0.013 23.6 10.7 79 101-180 7-88 (239)
10 3n2f_G Na+/K+ ATPase gamma sub 22.2 32 0.0011 22.6 1.1 27 20-46 5-31 (31)
No 1
>1m0k_A BR, bacteriorhodopsin; ION pump, membrane protein, retinal protein, lipids, photore haloarchaea, 7-transmembrane, serpentine; HET: RET LI1 SQU; 1.43A {Halobacterium salinarum} SCOP: f.13.1.1 PDB: 1m0l_A* 1m0m_A* 2zfe_A* 2zzl_A* 1p8h_A* 1o0a_A* 1py6_A* 1r2n_A* 1ucq_A* 1vjm_A* 2ntu_A* 2ntw_A* 3har_A* 1c8r_A* 2wjk_A* 2wjl_A* 2i21_A* 1p8i_A* 1p8u_A* 3han_A* ...
Probab=71.12 E-value=11 Score=34.05 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhh----hhhhccchhhHHhhhhHHhhhhHHHHHhhhcceeeeeeecchh----hHHHHhhhhhhH
Q 047564 103 TLGSLLFFLAILFLFIQ----EEKNYGLFKLEKHALNMLIAGPVLWLLGSIHNSCQIYERADGH----VQILQQSVHIPF 174 (309)
Q Consensus 103 ~~G~lL~~vg~iffl~q----~e~~y~~~~le~hganllIaG~~LwllGSihN~cQIYErAdgh----vQiLq~~V~ipf 174 (309)
-+|+..++++.+||+.. ...+++. ..--.++-++|++-.=+-..+-++...+....+.+ +--.++.+.+|+
T Consensus 27 w~~~a~m~~atv~F~~~~~~~~~~~~R~-~~~v~~lit~IAa~~Y~~Ma~~~g~~~~~~~g~~r~v~~~RYidWllTvPL 105 (262)
T 1m0k_A 27 ALGTALMGLGTLYFLVKGMGVSDPDAKK-FYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLFTTPL 105 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCHHHHH-HHHHHHHHHHHHHHHHHHHHTTTTCEEEEETTEEEEECTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccee-hhhHHHHHHHHHHHHHHHHHHccCceeeccCCCcceeeHHHHhhHHHHHHH
Confidence 36777888888877642 1122221 12345566666666656666665543333222222 124588899998
Q ss_pred HHHHH
Q 047564 175 LMGSL 179 (309)
Q Consensus 175 LiGSl 179 (309)
++=-+
T Consensus 106 llve~ 110 (262)
T 1m0k_A 106 LLLDL 110 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87655
No 2
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Probab=52.34 E-value=1.2e+02 Score=27.41 Aligned_cols=78 Identities=9% Similarity=0.023 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhhhhh---ccchhhHHhhhhHHhhhhHHHHHhhhcceeeeeeecchhhHHHHhhhhhhHHHHHHH
Q 047564 104 LGSLLFFLAILFLFIQEEKN---YGLFKLEKHALNMLIAGPVLWLLGSIHNSCQIYERADGHVQILQQSVHIPFLMGSLL 180 (309)
Q Consensus 104 ~G~lL~~vg~iffl~q~e~~---y~~~~le~hganllIaG~~LwllGSihN~cQIYErAdghvQiLq~~V~ipfLiGSlL 180 (309)
+|+..+.++.++|+....+. ++. ..--.++-++|++-.-+...+-+-...+=.|.--..--.++.+.+|.++-.+.
T Consensus 10 ~~~a~m~~atv~F~~~~~~v~~~~R~-~~~~~~lit~iAa~~Y~~Ma~~~G~~~~~~r~i~~~RYiDWllTvPLllvel~ 88 (261)
T 1xio_A 10 IYVAGMTIGALHFWSLSRNPRGVPQY-EYLVAMFIPIWSGLAYMAMAIDQGKVEAAGQIAHYARYIDWMVTTPLLLLSLS 88 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTCCHH-HHHHHHHHHHHHHHHHHHHHHC---------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCccee-eehHHHHHHHHHHHHHHHHHhCCCeeecCCCceeeeHHhhHHHHHHHHHHHHH
Confidence 56777777777776443221 211 12334555555555544444432222221233335557889999999877665
Q ss_pred HH
Q 047564 181 LM 182 (309)
Q Consensus 181 FL 182 (309)
.+
T Consensus 89 Li 90 (261)
T 1xio_A 89 WT 90 (261)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 3
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=45.18 E-value=1.6e+02 Score=26.03 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccchhhHHh---hhhHHhhhhHHHHHhhhcceeeeeeecchhhHHHHhhhhhhHHHHHH
Q 047564 103 TLGSLLFFLAILFLFIQEEKNYGLFKLEKH---ALNMLIAGPVLWLLGSIHNSCQIYERADGHVQILQQSVHIPFLMGSL 179 (309)
Q Consensus 103 ~~G~lL~~vg~iffl~q~e~~y~~~~le~h---ganllIaG~~LwllGSihN~cQIYErAdghvQiLq~~V~ipfLiGSl 179 (309)
-+++..++++.++|+.+..+.-.- ++.-| ++-++|++-.-+-..+-.+.. ...+...--.++.+.+|.++=.+
T Consensus 17 w~~~a~m~~~t~~f~~~~~~~~~~-~R~~~~~~~lit~iaa~~Yf~Ma~~~~~~---~~~~~~~RYidWllTvPLllvel 92 (243)
T 2l6x_A 17 WLVTAALLASTVFFFVERDRVSAK-WKTSLTVSGLVTGIAFWHYMYMRGVWIET---GDSPTVFRYIDWLLTVPLLICEF 92 (243)
T ss_dssp HHHHHHHHHHHHHHHHGGGSSCST-THHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCCc-ceehhhHHHHHHHHHHHHHHHHHHhhccc---CCccceeehhcHHHHHHHHHHHH
Confidence 366777888887777554321111 23334 444455544433332222111 11122345789999999998776
Q ss_pred HHHHHhhhccccccccccccccccccchhHHHHHHHHHHHHHhhh
Q 047564 180 LLMVGAILNSREQAGWMHHGTELLSTDWAWLGIIGSLLLFIGGLT 224 (309)
Q Consensus 180 LFLVgsIln~~~~~~~~~~~~~lLg~~~aW~~I~GSlLfliGgl~ 224 (309)
..+.+.. +. + .++..|.-+++|++++++|++
T Consensus 93 ~Li~~~~-g~---~----------~~~~~~~li~as~vMiv~G~~ 123 (243)
T 2l6x_A 93 YLILAAA-TN---V----------AGSLFKKLLVGSLVMLVFGYM 123 (243)
T ss_dssp HHHHHTT-TS---C----------CTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc-CC---c----------cHHHHHHHHHHHHHHHHHHHH
Confidence 6554331 10 0 123455556666666666654
No 4
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=45.16 E-value=92 Score=28.32 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccchhh---HHhhhhHHhhhhHHHHHhh
Q 047564 102 QTLGSLLFFLAILFLFIQEEKNYGLFKL---EKHALNMLIAGPVLWLLGS 148 (309)
Q Consensus 102 ~~~G~lL~~vg~iffl~q~e~~y~~~~l---e~hganllIaG~~LwllGS 148 (309)
.-+|+.++.++.+||+....+.-.- ++ -..++-++|+.-.-+-..|
T Consensus 20 lw~~~a~m~~atl~F~~~~~~v~~~-~R~~~~v~~lit~IAai~Yf~Ma~ 68 (273)
T 3ddl_A 20 FSFTVATMTASFVFFVLARNNVAPK-YRISMMVSALVVFIAGYHYFRITS 68 (273)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGSCGG-GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcc-eehhhHHHHHHHHHHHHHHHHHHh
Confidence 4478888888888887544321111 22 3344555555554444444
No 5
>2ei4_A AR 2, archaerhodopsin-2; membrane protein, retinal, bacterioruberin, proton pump, TRA protein; HET: GLC RET 22B L2P; 2.10A {Halobacterium SP} PDB: 1vgo_A* 2z55_A* 1uaz_A*
Probab=37.50 E-value=2.2e+02 Score=25.30 Aligned_cols=75 Identities=13% Similarity=0.071 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHh-h---hhhhccchhhHHhhhhHHhhhhHHHHHhhhcceeeee-----eecchhhHHHHhhhhhhH
Q 047564 104 LGSLLFFLAILFLFI-Q---EEKNYGLFKLEKHALNMLIAGPVLWLLGSIHNSCQIY-----ERADGHVQILQQSVHIPF 174 (309)
Q Consensus 104 ~G~lL~~vg~iffl~-q---~e~~y~~~~le~hganllIaG~~LwllGSihN~cQIY-----ErAdghvQiLq~~V~ipf 174 (309)
+|+..+.++.+||+. . ..+++|. ..--.++-++|++-.-+...+-.....+- .|.--.+--.++.+.+|.
T Consensus 19 ~~~a~m~~atv~F~~~~~~~~~~~~R~-~~~~~~lvt~iAa~~Y~~Ma~~~g~~~v~~~~g~~~~v~~~RYidWllTvPL 97 (253)
T 2ei4_A 19 IGTLLMLIGTFYFIARGWGVTDKEARE-YYAITILVPGIASAAYLAMFFGIGVTEVELASGTVLDIYYARYADWLFTTPL 97 (253)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCEEEECTTSCEEEECTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccee-ehhHHHHHHHHHHHHHHHHHhcCCceeeeccCCCcceeeHHHHHhHHHHHHH
Confidence 566666666666653 1 2122221 12334555566665545555433321110 011111134688888888
Q ss_pred HHHHH
Q 047564 175 LMGSL 179 (309)
Q Consensus 175 LiGSl 179 (309)
++--+
T Consensus 98 llve~ 102 (253)
T 2ei4_A 98 LLLDL 102 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87655
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=32.46 E-value=30 Score=26.42 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.2
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhhhccCC
Q 047564 19 RNRAECMNAGLYVFATIVLLGGFAAEFSR 47 (309)
Q Consensus 19 ~~RwEyiNAg~Yvfaalll~~G~~a~ls~ 47 (309)
..-||-+--|--+||++++++|.+..+|.
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchHHheecchhhHHHHHHHHHHHHHcC
Confidence 35788899999999999999999987774
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=31.42 E-value=30 Score=26.88 Aligned_cols=29 Identities=7% Similarity=-0.012 Sum_probs=25.6
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhhhccCC
Q 047564 19 RNRAECMNAGLYVFATIVLLGGFAAEFSR 47 (309)
Q Consensus 19 ~~RwEyiNAg~Yvfaalll~~G~~a~ls~ 47 (309)
..-||-+-.|--+||++++++|.+..+|.
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~ 41 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAG 41 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcC
Confidence 35788899999999999999999998884
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=29.26 E-value=26 Score=27.15 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.8
Q ss_pred chhhhhhhHHHHHHHHHHHhhhhhccC
Q 047564 20 NRAECMNAGLYVFATIVLLGGFAAEFS 46 (309)
Q Consensus 20 ~RwEyiNAg~Yvfaalll~~G~~a~ls 46 (309)
.-||-+--|--+||++++++|.+..+|
T Consensus 11 YDY~tLRiGGLifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 11 YDYQSLQIGGLVIAGILFILGILIVLS 37 (72)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhhccchHHHHHHHHHHHHHHHc
Confidence 568889899999999999999988766
No 9
>3qap_A Sensory rhodopsin-2; phototaxis, nphtrii, membrane, transport protein; HET: RET BOG LFA L2P; 1.90A {Natronomonas pharaonis} SCOP: f.13.1.1 PDB: 1gue_A* 1gu8_A* 1h68_A* 3qdc_A* 2f93_A* 2f95_A* 2ksy_A* 1h2s_A* 1jgj_A*
Probab=23.17 E-value=3.9e+02 Score=23.55 Aligned_cols=79 Identities=11% Similarity=-0.043 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh---hccchhhHHhhhhHHhhhhHHHHHhhhcceeeeeeecchhhHHHHhhhhhhHHHH
Q 047564 101 VQTLGSLLFFLAILFLFIQEEK---NYGLFKLEKHALNMLIAGPVLWLLGSIHNSCQIYERADGHVQILQQSVHIPFLMG 177 (309)
Q Consensus 101 v~~~G~lL~~vg~iffl~q~e~---~y~~~~le~hganllIaG~~LwllGSihN~cQIYErAdghvQiLq~~V~ipfLiG 177 (309)
..-+|+..+.++.++|+....+ ++|. ..--.++-++|++-.=+...+-.--..+=.|.--..--.++.+.+|.++=
T Consensus 7 ~lw~~~~~m~~~tv~F~~~~~~~~~~~R~-~~~v~~lit~iaai~Y~~Ma~~~G~~~~~~r~v~~~RYidWllTvPLllv 85 (239)
T 3qap_A 7 LFWLGAIGMLVGTLAFAWAGRDAGSGERR-YYVTLVGISGIAAVAYVVMALGVGWVPVAERTVFAPRYIDWILTTPLIVY 85 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCTTTHH-HHHHHHHHHHHHHHHHHHHHTTCCEEEETTEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcchhh-hhHHHHHHHHHHHHHHHHHHHcCCeeecCCCceeeeHHhhHHHHHHHHHH
Confidence 3456788888888887643221 2211 22334445555555555555422111110011113346788888888876
Q ss_pred HHH
Q 047564 178 SLL 180 (309)
Q Consensus 178 SlL 180 (309)
-+-
T Consensus 86 el~ 88 (239)
T 3qap_A 86 FLG 88 (239)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 10
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=22.22 E-value=32 Score=22.62 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=22.3
Q ss_pred chhhhhhhHHHHHHHHHHHhhhhhccC
Q 047564 20 NRAECMNAGLYVFATIVLLGGFAAEFS 46 (309)
Q Consensus 20 ~RwEyiNAg~Yvfaalll~~G~~a~ls 46 (309)
.-||-.-.|--+||+++++.|++..+|
T Consensus 5 yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 5 YDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 458888889999999999999886543
Done!