Query 047565
Match_columns 106
No_of_seqs 104 out of 348
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 21:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vq8_Q 50S ribosomal protein L 100.0 2.4E-48 8.1E-53 270.8 6.8 85 1-85 1-85 (96)
2 3jyw_Q 60S ribosomal protein L 100.0 3.6E-48 1.2E-52 277.6 -0.0 86 2-87 1-86 (116)
3 4a17_P RPL21, 60S ribosomal pr 100.0 1.1E-46 3.8E-51 281.1 7.8 88 1-88 1-88 (157)
4 3iz5_U 60S ribosomal protein L 100.0 6.6E-47 2.2E-51 284.0 6.5 88 1-88 1-88 (164)
5 3izc_U 60S ribosomal protein R 100.0 1.4E-46 4.7E-51 281.3 6.5 88 1-88 1-88 (160)
6 2zkr_q 60S ribosomal protein L 100.0 1.3E-46 4.5E-51 281.4 6.1 87 1-87 1-87 (160)
7 3j21_R 50S ribosomal protein L 100.0 8.7E-46 3E-50 258.2 8.1 80 1-82 2-81 (97)
8 2zzd_A Thiocyanate hydrolase s 78.6 1.3 4.5E-05 31.6 2.6 37 32-69 35-72 (126)
9 2heq_A YORP protein; SH3-like, 77.0 1.9 6.6E-05 28.7 2.9 32 33-68 11-42 (84)
10 2do3_A Transcription elongatio 76.6 3.4 0.00012 26.6 4.0 43 26-79 10-52 (69)
11 3qyh_B CO-type nitrIle hydrata 74.2 1.9 6.4E-05 33.0 2.6 35 33-68 130-165 (219)
12 1ugp_B NitrIle hydratase beta 73.1 2 7E-05 32.9 2.6 35 33-68 138-173 (226)
13 3hht_B NitrIle hydratase beta 72.5 2.2 7.4E-05 32.9 2.6 36 32-68 140-176 (229)
14 1vq8_T 50S ribosomal protein L 71.9 4.1 0.00014 28.6 3.7 56 34-99 43-103 (120)
15 4fm4_B NitrIle hydratase beta 67.5 4 0.00014 30.8 3.1 36 33-69 118-154 (206)
16 3a8g_B NitrIle hydratase subun 66.6 4.3 0.00015 30.9 3.1 36 32-68 121-158 (212)
17 2khj_A 30S ribosomal protein S 63.2 5.8 0.0002 25.9 2.9 28 18-45 13-40 (109)
18 4avr_A PA4485; unknown functio 60.7 4.3 0.00015 27.5 1.9 47 37-87 21-71 (95)
19 4a17_S RPL26, 60S ribosomal pr 58.0 5.4 0.00019 28.7 2.2 63 26-98 33-108 (135)
20 2e6z_A Transcription elongatio 57.2 13 0.00044 22.4 3.5 36 32-77 6-41 (59)
21 3iz5_Y 60S ribosomal protein L 49.8 7.3 0.00025 28.5 1.7 63 26-98 33-108 (150)
22 3r8s_U 50S ribosomal protein L 49.5 7.8 0.00027 26.3 1.8 35 32-77 2-36 (102)
23 3j21_U 50S ribosomal protein L 44.7 17 0.00058 25.4 2.9 65 26-100 30-107 (121)
24 2zkr_t 60S ribosomal protein L 43.7 12 0.00042 26.9 2.2 55 33-97 48-108 (145)
25 2zjr_R 50S ribosomal protein L 42.4 11 0.00036 26.1 1.6 34 33-76 15-48 (115)
26 1hr0_W Translation initiation 42.1 10 0.00036 23.5 1.4 24 15-46 36-59 (71)
27 3udc_A Small-conductance mecha 40.9 26 0.00089 26.4 3.7 30 31-75 126-155 (285)
28 1ah9_A IF1, initiation factor 40.5 13 0.00045 22.9 1.6 26 13-46 33-58 (71)
29 2vv5_A MSCS, small-conductance 36.0 24 0.00084 26.6 2.9 29 32-75 128-156 (286)
30 2bzy_A CRK-like protein, CRKL 34.5 30 0.001 20.1 2.5 27 33-63 21-49 (67)
31 2k52_A Uncharacterized protein 32.9 12 0.0004 23.0 0.5 23 23-45 31-57 (80)
32 1nz9_A Transcription antitermi 32.6 29 0.00099 20.2 2.2 28 33-70 4-31 (58)
33 3v2d_Y 50S ribosomal protein L 31.9 23 0.00079 24.3 1.9 34 33-76 6-39 (110)
34 1v76_A RNAse P protein PH1771P 31.7 65 0.0022 21.3 4.1 44 53-102 28-71 (96)
35 4a6q_A Histone deacetylase com 30.9 24 0.00083 25.4 2.0 15 32-46 125-139 (143)
36 2eyx_A V-CRK sarcoma virus CT1 30.7 31 0.001 20.2 2.1 27 33-63 26-54 (67)
37 2dbk_A CRK-like protein; struc 30.5 36 0.0012 21.0 2.5 27 33-63 36-64 (88)
38 1qp2_A Protein (PSAE protein); 30.0 56 0.0019 21.1 3.4 37 34-78 2-42 (70)
39 3u5e_Y L33, YL33, 60S ribosoma 30.0 27 0.00092 24.7 2.0 55 34-98 50-109 (127)
40 3ulb_A Target of rapamycin com 29.1 80 0.0027 22.2 4.4 40 36-79 35-84 (121)
41 2k8i_A SLYD, peptidyl-prolyl C 28.8 73 0.0025 22.6 4.3 63 24-86 42-131 (171)
42 2ftc_N Mitochondrial ribosomal 28.8 58 0.002 21.7 3.5 30 37-76 1-30 (96)
43 2k9g_A SH3 domain-containing k 28.3 32 0.0011 20.2 2.0 13 33-45 27-39 (73)
44 4ayb_G DNA-directed RNA polyme 28.0 53 0.0018 23.5 3.3 37 31-69 46-82 (132)
45 2jte_A CD2-associated protein; 27.5 35 0.0012 19.5 2.0 12 33-44 24-35 (64)
46 2dmo_A Neutrophil cytosol fact 26.7 41 0.0014 19.6 2.2 12 33-44 25-36 (68)
47 2i0n_A Class VII unconventiona 26.4 34 0.0012 20.7 1.8 27 33-63 28-57 (80)
48 4eql_A 4-substituted benzoates 25.4 24 0.00082 30.1 1.3 40 31-73 397-436 (581)
49 4e6r_A Cytoplasmic protein NCK 24.4 60 0.0021 17.8 2.6 26 33-62 19-46 (58)
50 2eqs_A ATP-dependent RNA helic 24.0 27 0.00094 22.5 1.1 15 32-46 59-73 (103)
51 1uff_A Intersectin 2; beta bar 23.6 37 0.0013 21.1 1.7 27 33-63 23-53 (93)
52 2j6f_A CD2-associated protein; 23.1 55 0.0019 18.6 2.3 12 33-44 19-30 (62)
53 1k4u_S Phagocyte NADPH oxidase 23.0 68 0.0023 18.1 2.6 13 33-45 23-35 (62)
54 4b3f_X DNA-binding protein smu 22.8 1.2E+02 0.004 25.1 4.9 41 32-79 79-119 (646)
55 1jb0_E Photosystem 1 reaction 22.6 76 0.0026 20.7 3.0 28 35-70 2-29 (75)
56 2zae_A Ribonuclease P protein 22.4 1.1E+02 0.0037 21.4 4.0 54 36-102 49-102 (127)
57 4glm_A Dynamin-binding protein 22.3 74 0.0025 18.3 2.7 12 33-44 31-42 (72)
58 2da9_A SH3-domain kinase bindi 22.2 44 0.0015 19.4 1.7 28 33-64 25-56 (70)
59 2ed0_A ABL interactor 2; coile 20.8 65 0.0022 19.2 2.3 12 33-44 35-46 (78)
60 2nwm_A Vinexin; cell adhesion; 20.8 72 0.0024 18.6 2.5 12 33-44 19-30 (65)
61 2yuo_A CIP85, RUN and TBC1 dom 20.6 51 0.0017 19.6 1.8 12 33-44 25-36 (78)
62 1ts9_A Ribonuclease P protein 20.4 1.6E+02 0.0054 19.6 4.4 62 28-101 8-69 (102)
63 1oot_A Hypothetical 40.4 kDa p 20.2 57 0.002 18.2 1.9 13 33-45 21-33 (60)
64 2lqk_A Transcriptional regulat 25.4 22 0.00075 22.1 0.0 12 31-42 4-15 (70)
No 1
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=100.00 E-value=2.4e-48 Score=270.78 Aligned_cols=85 Identities=26% Similarity=0.315 Sum_probs=82.6
Q ss_pred CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565 1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (106)
Q Consensus 1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V 80 (106)
|++|+|+|++||+||||+||+||++||++||++|++||+|||++|||+||||||+||||+||+|+|++|+||+|+|||+|
T Consensus 1 m~~s~G~R~~TR~~fsr~fR~~G~~pls~~m~~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vnk~v 80 (96)
T 1vq8_Q 1 MPSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGG 80 (96)
T ss_dssp -CCCCSTTTTCTTTTSCCGGGCSSCCSHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEETT
T ss_pred CCCCCCccccchHhhCCCccccCCCCHHHHHHHcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEEeecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceec
Q 047565 81 KFFMP 85 (106)
Q Consensus 81 ~gk~~ 85 (106)
+||.|
T Consensus 81 k~Kri 85 (96)
T 1vq8_Q 81 KEKTI 85 (96)
T ss_dssp EEEEE
T ss_pred CCcEE
Confidence 99854
No 2
>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q
Probab=100.00 E-value=3.6e-48 Score=277.63 Aligned_cols=86 Identities=57% Similarity=0.903 Sum_probs=84.6
Q ss_pred CCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEeceeC
Q 047565 2 PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVK 81 (106)
Q Consensus 2 ~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V~ 81 (106)
++|+|+|++||+||||+||+||++||++||++|++||+|||++||+|||||||+|||||||+||||+|+||||+|||||+
T Consensus 1 ~~skG~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGKTGrV~nvt~~AvgivVnkqv~ 80 (116)
T 3jyw_Q 1 GKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVG 80 (116)
T ss_dssp CCCCSSSSSCHHHHSCCSTTCSSCCSSTTTCCCCTTCBCCBCCCSSSCTTCCCSTTSSCCCBCCCCCSSSSSEEEECCCS
T ss_pred CCCCCCCCCChhhhcCCccccCCCCHHHHHHHhCCCCEEEEeccCccCCCCCCcccCCCCeEEEeecCcEEEEEEEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecee
Q 047565 82 FFMPFL 87 (106)
Q Consensus 82 gk~~~~ 87 (106)
||||++
T Consensus 81 gKil~K 86 (116)
T 3jyw_Q 81 NRYLEK 86 (116)
T ss_dssp SSSCCC
T ss_pred Ceeeee
Confidence 999877
No 3
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=100.00 E-value=1.1e-46 Score=281.12 Aligned_cols=88 Identities=47% Similarity=0.793 Sum_probs=85.7
Q ss_pred CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565 1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (106)
Q Consensus 1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V 80 (106)
|++|+|+|++||+||||+||+||++||++||++|++||+|||++||||||||||+|||||||+||||+|+|+||+||+||
T Consensus 1 M~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v 80 (157)
T 4a17_P 1 MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIV 80 (157)
T ss_dssp -CCCCCTTTTCHHHHSCCTTCTTCCCHHHHHCCCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEEEEE
T ss_pred CCCCCCCcCCChhhhcCCccccCCCCHHHHHHHhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEEEeE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceeceee
Q 047565 81 KFFMPFLF 88 (106)
Q Consensus 81 ~gk~~~~~ 88 (106)
+||||++-
T Consensus 81 ~gkil~Kr 88 (157)
T 4a17_P 81 NGRYIEKR 88 (157)
T ss_dssp TTEEEEEE
T ss_pred CCEeeeeE
Confidence 99998874
No 4
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=100.00 E-value=6.6e-47 Score=284.00 Aligned_cols=88 Identities=86% Similarity=1.332 Sum_probs=86.5
Q ss_pred CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565 1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (106)
Q Consensus 1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V 80 (106)
|++|+|+|++||+||||+||+||++||++||++|++||+|||++||||||||||+|||||||+||||+|+||||+|||||
T Consensus 1 m~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvt~~AvgV~Vnk~v 80 (164)
T 3iz5_U 1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (164)
T ss_dssp CCCCCCTTSSCHHHHCCCGGGCSCCCTHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTEEEEEEEECSSSEEEEEECCS
T ss_pred CCCCCCCCCCChhhhcCCccccCCCCHHHHHHHhCCCCEEEEEccCcccCCCCCcccCCCCeeEEeecCCEEEEEEEeee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceeceee
Q 047565 81 KFFMPFLF 88 (106)
Q Consensus 81 ~gk~~~~~ 88 (106)
+||||++-
T Consensus 81 ~gkil~Kr 88 (164)
T 3iz5_U 81 GNRIIKKR 88 (164)
T ss_dssp SSSCCEEE
T ss_pred CCeeeeeE
Confidence 99998873
No 5
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=100.00 E-value=1.4e-46 Score=281.31 Aligned_cols=88 Identities=57% Similarity=0.887 Sum_probs=86.5
Q ss_pred CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565 1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (106)
Q Consensus 1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V 80 (106)
|++|+|+|++||+||||+||+||++||++||++|++||+|||++||||||||||+|||||||+||||+|+|+||+||+||
T Consensus 1 M~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v 80 (160)
T 3izc_U 1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMV 80 (160)
T ss_dssp CCSCCCSSTTCHHHHCCCTTTCSCCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEECSSSEEEEECCCS
T ss_pred CCCCCCCCCCChhhhcCCccccCCCCHHHHHHHhcCCCEEEEeccCccCCCCCCcccCCCCeEEEeeCCcEEEEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceeceee
Q 047565 81 KFFMPFLF 88 (106)
Q Consensus 81 ~gk~~~~~ 88 (106)
+||||++-
T Consensus 81 ~gkil~Kr 88 (160)
T 3izc_U 81 GNRYLEKR 88 (160)
T ss_dssp SSSCCCEE
T ss_pred CCEeeeeE
Confidence 99998873
No 6
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.3e-46 Score=281.44 Aligned_cols=87 Identities=56% Similarity=0.915 Sum_probs=83.1
Q ss_pred CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565 1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (106)
Q Consensus 1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V 80 (106)
|++|+|+|++||+||||+||+||++||++||++|++||+|||++||||||||||+||||+||+|+||+|+||||+||+||
T Consensus 1 M~~s~G~R~~TR~~fsr~fRk~G~~plst~m~~yk~GD~VdIk~~~svqKGmPhk~yHGkTGrV~~v~~~AvgViVnk~v 80 (160)
T 2zkr_q 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQV 80 (160)
T ss_dssp ---CCSSSTTCHHHHSCCTTTCSCCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECC
T ss_pred CCCCCCccccchHhhCCCccccCCCcHHHHHHHcCCCCEEEEEecCCcccCCCCcccCCCCeEEEeEcCCEEEEEEEEee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceecee
Q 047565 81 KFFMPFL 87 (106)
Q Consensus 81 ~gk~~~~ 87 (106)
+||||++
T Consensus 81 ~~kil~K 87 (160)
T 2zkr_q 81 KGKILAK 87 (160)
T ss_dssp SSCCSCE
T ss_pred CCeeeee
Confidence 9999886
No 7
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.7e-46 Score=258.18 Aligned_cols=80 Identities=33% Similarity=0.599 Sum_probs=77.9
Q ss_pred CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565 1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (106)
Q Consensus 1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V 80 (106)
|++|+|+|++||+||||+||+||++||++||++|++||+|||++||||||||||+|||||||+||||+|+||+|+||+
T Consensus 2 m~~s~G~R~~TR~~fsr~fRk~G~~pls~~m~~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~Vn~-- 79 (97)
T 3j21_R 2 VQKAHSFRRKTRKKLSKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEIKD-- 79 (97)
T ss_dssp -CCSCCSSTTCTTTSCCCTTTCSSCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEE--
T ss_pred CCCCCCCcCCChhhhcCCccccCCCcHHHHHHHhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEEEEe--
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred Cc
Q 047565 81 KF 82 (106)
Q Consensus 81 ~g 82 (106)
+|
T Consensus 80 ~g 81 (97)
T 3j21_R 80 GS 81 (97)
T ss_dssp TT
T ss_pred CC
Confidence 67
No 8
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=78.62 E-value=1.3 Score=31.62 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=26.0
Q ss_pred HhccCCCEEEEEEcC-ceecCCCCCcccCcceEEEcccC
Q 047565 32 RTYKIGDYVDVKVNG-AVHKGMPHKFYHGRTGRVWNVTK 69 (106)
Q Consensus 32 ~~yk~GD~VdIkid~-svqKGMPHk~YHGkTG~V~~v~~ 69 (106)
..|++||.|.++-.+ .-|--+| .+=-||||+|.-+.+
T Consensus 35 prF~vGDrVrvr~~~p~gHtRlP-~YvRGk~G~I~~~~G 72 (126)
T 2zzd_A 35 SKFNVGDRVRIKDLPDLFYTRTM-TYTRGATGTIVRLVY 72 (126)
T ss_dssp CSSCTTCEEEECCCCCSSCCSSC-GGGTTCEEEEEEEEE
T ss_pred CccCCCCEEEEccCCCCCceecc-HHhCCCEEEEEEEec
Confidence 359999999997443 3444455 455799999976653
No 9
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=77.01 E-value=1.9 Score=28.70 Aligned_cols=32 Identities=31% Similarity=0.611 Sum_probs=25.9
Q ss_pred hccCCCEEEEEEcCceecCCCCCcccCcceEEEccc
Q 047565 33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVT 68 (106)
Q Consensus 33 ~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~ 68 (106)
.|..||.|.| |....-|||| +-|+-|+|...-
T Consensus 11 sYp~gl~VeI--N~NAkygcPh--hVGrkGkIie~~ 42 (84)
T 2heq_A 11 SYPVGLAVEI--NNNARYGCPH--HVGRKGKIIEHL 42 (84)
T ss_dssp CSCTTCEEEE--CTTCTTTSTT--CCSSEEEEEEEC
T ss_pred ccCCCCEEEE--cCCcccCCcc--ccccccchhhhh
Confidence 5899999988 8888899999 568888776543
No 10
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=76.55 E-value=3.4 Score=26.62 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=30.6
Q ss_pred chHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEece
Q 047565 26 PLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQ 79 (106)
Q Consensus 26 ~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~ 79 (106)
|.+.+-..|++||-|-+. .| +|.|.||-|+.+.+.-+. .++++
T Consensus 10 p~~~LrK~F~~GDHVkVi------~G----~~~getGlVV~v~~d~v~-v~SD~ 52 (69)
T 2do3_A 10 PAQELRKYFKMGDHVKVI------AG----RFEGDTGLIVRVEENFVI-LFSDL 52 (69)
T ss_dssp CCCCCCSSCCTTCEEEES------SS----TTTTCEEEEEEECSSCEE-EEESS
T ss_pred cHHHceeeccCCCeEEEe------cc----EEcCceEEEEEEeCCEEE-EEeCC
Confidence 334444569999999772 23 799999999999977554 44554
No 11
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=74.25 E-value=1.9 Score=33.02 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=25.3
Q ss_pred hccCCCEEEEEEc-CceecCCCCCcccCcceEEEccc
Q 047565 33 TYKIGDYVDVKVN-GAVHKGMPHKFYHGRTGRVWNVT 68 (106)
Q Consensus 33 ~yk~GD~VdIkid-~svqKGMPHk~YHGkTG~V~~v~ 68 (106)
.|++||.|.++-. +.-|--+| .+=.||||+|.-+.
T Consensus 130 ~F~vGd~Vrv~~~~~~~HtR~P-~Y~RG~~G~I~~~~ 165 (219)
T 3qyh_B 130 RFAVGDKVRVLNKNPVGHTRMP-RYTRGKVGTVVIDH 165 (219)
T ss_dssp CCCTTCEEEECCCCCSSCCCSC-GGGTTCEEEEEEEE
T ss_pred CCCCCCEEEECCCCCCCccccc-HHHCCCeeEEEEEe
Confidence 4999999999544 44444455 45689999997664
No 12
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=73.10 E-value=2 Score=32.95 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=25.0
Q ss_pred hccCCCEEEEEEcCc-eecCCCCCcccCcceEEEccc
Q 047565 33 TYKIGDYVDVKVNGA-VHKGMPHKFYHGRTGRVWNVT 68 (106)
Q Consensus 33 ~yk~GD~VdIkid~s-vqKGMPHk~YHGkTG~V~~v~ 68 (106)
.|++||.|.++-.+. -|--+| .+=.||||+|.-+.
T Consensus 138 ~F~vGd~Vrv~~~~~~~HtR~P-~Y~Rgk~G~I~~~~ 173 (226)
T 1ugp_B 138 KFKEGDVVRFSTASPKGHARRA-RYVRGKTGTVVKHH 173 (226)
T ss_dssp SCCTTCEEEECCCCCSSCCCCC-GGGTTCEEEEEEEE
T ss_pred cCCCCCeEEEccCCCCCccccc-HHhCCCeEEEEEEe
Confidence 599999999975433 444444 45579999998655
No 13
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=72.48 E-value=2.2 Score=32.90 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=25.7
Q ss_pred HhccCCCEEEEEEc-CceecCCCCCcccCcceEEEccc
Q 047565 32 RTYKIGDYVDVKVN-GAVHKGMPHKFYHGRTGRVWNVT 68 (106)
Q Consensus 32 ~~yk~GD~VdIkid-~svqKGMPHk~YHGkTG~V~~v~ 68 (106)
..|++||.|.++-. +.-|--+| .+=.||||+|.-+.
T Consensus 140 ~~F~vGd~Vrv~~~~~~~HtR~P-~Y~RG~~G~I~~~~ 176 (229)
T 3hht_B 140 PRFKVGERIKTKNIHPTGHTRFP-RYARDKYGVIDEVY 176 (229)
T ss_dssp CSCCTTCEEEECCCCCSSCCSCC-GGGTTCEEEEEEEE
T ss_pred CCCCCCCEEEECCCCCCCcccCc-HHHCCCeeEEEEEe
Confidence 35999999999543 44444455 45689999997664
No 14
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=71.90 E-value=4.1 Score=28.59 Aligned_cols=56 Identities=20% Similarity=0.124 Sum_probs=41.0
Q ss_pred ccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEec-----eeCceeceeecceeeEEeeec
Q 047565 34 YKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINK-----QVKFFMPFLFDSFRCIYLCEL 99 (106)
Q Consensus 34 yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK-----~V~gk~~~~~~~~~~~~~~~~ 99 (106)
.+.||.|-|.-- .|-|++|+|..|......|.|.. .-+|...+-|+.-....+|.-
T Consensus 43 IkkGD~V~Vi~G----------~dKGk~GkV~~V~~k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~~~ 103 (120)
T 1vq8_T 43 VNAGDTVEVLRG----------DFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLD 103 (120)
T ss_dssp CCTTCEEEECSS----------TTTTCEEEEEEEETTTTEEEETTCEEECSSSCEEECCBCGGGEEEEECC
T ss_pred ccCCCEEEEEec----------CCCCCEEEEEEEECCCCEEEEeCeEeEcCCCCEEEeeechHHEEEEecc
Confidence 577999987432 27899999999987765555544 237888888888777777643
No 15
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=67.45 E-value=4 Score=30.80 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=24.4
Q ss_pred hccCCCEEEEEEcCc-eecCCCCCcccCcceEEEcccC
Q 047565 33 TYKIGDYVDVKVNGA-VHKGMPHKFYHGRTGRVWNVTK 69 (106)
Q Consensus 33 ~yk~GD~VdIkid~s-vqKGMPHk~YHGkTG~V~~v~~ 69 (106)
.|++||.|.++-... =|--+| .+=-||||+|..+.|
T Consensus 118 ~F~vGd~Vrv~~~~~~gHtRlP-~Y~rg~~G~I~~~~g 154 (206)
T 4fm4_B 118 GFKLGQRVHVKNEFVPGHTRFP-AYIRGKAGVVVGISP 154 (206)
T ss_dssp CCCTTCEEEECCCCCSSCCSSC-GGGTTCEEEEEEECC
T ss_pred CCcCCCEEEeCCCCCCCccccc-HhhcCCeeEEEEEec
Confidence 499999999974322 222233 345799999987765
No 16
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=66.57 E-value=4.3 Score=30.89 Aligned_cols=36 Identities=31% Similarity=0.563 Sum_probs=24.9
Q ss_pred HhccCCCEEEEEEc-CceecCCCCCcccCcceEE-Eccc
Q 047565 32 RTYKIGDYVDVKVN-GAVHKGMPHKFYHGRTGRV-WNVT 68 (106)
Q Consensus 32 ~~yk~GD~VdIkid-~svqKGMPHk~YHGkTG~V-~~v~ 68 (106)
..|++||.|.++-. +.-|--+| .+=.||||+| .-+.
T Consensus 121 ~~F~vGd~Vrv~~~~~~gHtR~P-~YvRGk~G~I~~~~~ 158 (212)
T 3a8g_B 121 TTFEVGQRVRVRDEYVPGHIRMP-AYCRGRVGTISHRTT 158 (212)
T ss_dssp CCCCTTCEEEECCCCCSSCCSCC-GGGTTCEEEEEEECS
T ss_pred cccCCCCeEEEecCCCCCccccc-HHHCCCeEEEEEEec
Confidence 35999999999744 34444455 4568999999 4443
No 17
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=63.17 E-value=5.8 Score=25.89 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=16.7
Q ss_pred cccCCCCCchHHHHHhccCCCEEEEEEc
Q 047565 18 PFRKKGYIPLSTYLRTYKIGDYVDVKVN 45 (106)
Q Consensus 18 ~fR~~G~~~ls~~l~~yk~GD~VdIkid 45 (106)
+.++--..|+..++..+++||.|.-+|-
T Consensus 13 ~iKq~~~~p~~~~~~~~~~G~iv~G~V~ 40 (109)
T 2khj_A 13 GLVPRGSHMFNNWVALNKKGAIVTGKVT 40 (109)
T ss_dssp --------CHHHHTTTCCSSSEEEEEEE
T ss_pred chhhcccCHHHHHhhcCCCCCEEEEEEE
Confidence 4445555689999999999999865543
No 18
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}
Probab=60.68 E-value=4.3 Score=27.48 Aligned_cols=47 Identities=26% Similarity=0.319 Sum_probs=31.8
Q ss_pred CCEEEEEEcCceecCCCCCcccCcceEEEc-ccCCEEEEEEece---eCceecee
Q 047565 37 GDYVDVKVNGAVHKGMPHKFYHGRTGRVWN-VTKRAIGVEINKQ---VKFFMPFL 87 (106)
Q Consensus 37 GD~VdIkid~svqKGMPHk~YHGkTG~V~~-v~~~AvgV~VnK~---V~gk~~~~ 87 (106)
|+.-+-...-+-|+-+|. |..=+|.| -+++++.|.||++ ++||+|.|
T Consensus 21 Ge~~~~~~~tAAH~tlP~----gt~vrVtNl~nGksVvVrVnDRGP~~~griIDL 71 (95)
T 4avr_A 21 GERYNPNAMTAAHRTLPF----GARVRVTNLDNRRSVVVRINDRGPFRRGRIIDV 71 (95)
T ss_dssp SCBCCTTSCEEECSSSCT----TCEEEEEETTTCCEEEEEEEECCCCSTTEEEEE
T ss_pred ccCcCCCCCEEEcCCCCC----CcEEEEEECCCCcEEEEEEccCCCCCCCCEEEe
Confidence 343333334567788885 45557888 4899999999998 56666543
No 19
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=58.04 E-value=5.4 Score=28.66 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=43.8
Q ss_pred chHHHHHh--------ccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEe-----ceeCceeceeeccee
Q 047565 26 PLSTYLRT--------YKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEIN-----KQVKFFMPFLFDSFR 92 (106)
Q Consensus 26 ~ls~~l~~--------yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~Vn-----K~V~gk~~~~~~~~~ 92 (106)
|||.-|++ .+.||.|-|. -| .|-|++|.|..|.....-|.|. |.-++...+-|+.-.
T Consensus 33 ~LSkeLr~ky~vRs~~IkkgD~V~Vi-~G---------kdKGk~GkV~~V~~kk~~V~VEgVn~~K~~G~~~e~pIh~SN 102 (135)
T 4a17_S 33 HLSKDLRSKYNVRSMPVRKDDEVLIV-RG---------KFKGNKGKVTQVYRKKWAIHVEKISKNKLNGAPYQIPLSASQ 102 (135)
T ss_dssp EECHHHHHHHTCSEEECCTTCEEEEC-SS---------TTTTCEEEEEEEETTTTEEEETTCCEEETTTEEECCCBCGGG
T ss_pred cCCHHHHHHhCCCcccccCCCEEEEe-ec---------CCCCceeeEEEEEcCCCEEEEeCeEEEcCCCCEEEcccchHH
Confidence 67777776 7789999653 22 4889999999998765444442 223456677788777
Q ss_pred eEEeee
Q 047565 93 CIYLCE 98 (106)
Q Consensus 93 ~~~~~~ 98 (106)
....|.
T Consensus 103 V~i~~~ 108 (135)
T 4a17_S 103 LVLTKL 108 (135)
T ss_dssp EEEEEC
T ss_pred EEEEcc
Confidence 777763
No 20
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.15 E-value=13 Score=22.40 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=26.7
Q ss_pred HhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEe
Q 047565 32 RTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEIN 77 (106)
Q Consensus 32 ~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~Vn 77 (106)
..|++||.|-|.-- | |.|-+|+|..+.+.-+.|.|.
T Consensus 6 ~~f~~GD~V~V~~G-------p---f~g~~G~V~evd~e~v~V~v~ 41 (59)
T 2e6z_A 6 SGFQPGDNVEVCEG-------E---LINLQGKILSVDGNKITIMPK 41 (59)
T ss_dssp SSCCTTSEEEECSS-------T---TTTCEEEECCCBTTEEEEEEC
T ss_pred ccCCCCCEEEEeec-------C---CCCCEEEEEEEeCCEEEEEEE
Confidence 35899999998422 2 577888899999886666654
No 21
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=49.75 E-value=7.3 Score=28.46 Aligned_cols=63 Identities=27% Similarity=0.292 Sum_probs=42.7
Q ss_pred chHHHHH--------hccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEe-----ceeCceeceeeccee
Q 047565 26 PLSTYLR--------TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEIN-----KQVKFFMPFLFDSFR 92 (106)
Q Consensus 26 ~ls~~l~--------~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~Vn-----K~V~gk~~~~~~~~~ 92 (106)
|||.-|+ ..+.||.|-|. -| .|-|++|.|..|.....-|.|. |.-+....+-|+.-.
T Consensus 33 ~LSkELR~ky~vRs~~IkKGD~V~Vi-~G---------kdKGk~GkVl~V~~kk~~V~VEGVN~~K~~G~~~eapIh~SN 102 (150)
T 3iz5_Y 33 ALSTELRHKYNVRSIPIRKDDEVQVV-RG---------SYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSK 102 (150)
T ss_dssp EECHHHHTTTTCSEEECCSSSEEEEC-SS---------TTTTCEEEEEEEETTTTEEEETTCEEECTTSCEEECCBCGGG
T ss_pred cCCHHHHHHhCCcccccCCCCEEEEe-ec---------CCCCccceEEEEEcCCCEEEEeCcEEEeCCCCEEecccchHH
Confidence 5666665 56789999653 22 4889999999998764444442 333556677788777
Q ss_pred eEEeee
Q 047565 93 CIYLCE 98 (106)
Q Consensus 93 ~~~~~~ 98 (106)
....|.
T Consensus 103 V~i~~~ 108 (150)
T 3iz5_Y 103 VVVTKL 108 (150)
T ss_dssp EEEEEC
T ss_pred EEEEcc
Confidence 777763
No 22
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=49.51 E-value=7.8 Score=26.34 Aligned_cols=35 Identities=29% Similarity=0.258 Sum_probs=25.7
Q ss_pred HhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEe
Q 047565 32 RTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEIN 77 (106)
Q Consensus 32 ~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~Vn 77 (106)
+..+.||.|-|. -+ .+-|++|.|..|... .-|.|.
T Consensus 2 ~~IkkGD~V~Vi-~G---------kdKGk~GkV~~V~~~-~~ViVe 36 (102)
T 3r8s_U 2 AKIRRDDEVIVL-TG---------KDKGKRGKVKNVLSS-GKVIVE 36 (102)
T ss_dssp CSSCSSCEEEEC-SS---------SSTTCEEEEEEEETT-TEEEET
T ss_pred CCccCCCEEEEe-Ec---------CCCCeeeEEEEEEeC-CEEEEe
Confidence 356889999663 22 378999999999887 555554
No 23
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.74 E-value=17 Score=25.41 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=42.0
Q ss_pred chHHHHH--------hccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEe-----ceeCceeceeeccee
Q 047565 26 PLSTYLR--------TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEIN-----KQVKFFMPFLFDSFR 92 (106)
Q Consensus 26 ~ls~~l~--------~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~Vn-----K~V~gk~~~~~~~~~ 92 (106)
|||.-|+ ..+.||.|-|. -| .|-|++|.|..|......|.|. +.-+....+-|+.-.
T Consensus 30 ~LSkeLR~ky~~r~~~IkkGD~V~Vi-~G---------kdKGk~GkV~~V~~k~~~V~VEgvn~~k~~G~~~e~pIh~SN 99 (121)
T 3j21_U 30 PLSRELREKYKVRNLPVRVGDKVRIM-RG---------DYKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSN 99 (121)
T ss_dssp EBCHHHHHHTCCSEEECCSSSEEEEC-SS---------SCSSEEEEEEEEETTTTEEEETTCEEECSSSCEEECCBCGGG
T ss_pred cCCHHHHHHhCCcccccccCCEEEEe-ec---------CCCCcEeEEEEEEecCCEEEEeCeEEEecCCcEEEcccCHHH
Confidence 6766554 34689999663 22 4789999999998654444442 333456677777766
Q ss_pred eEEeeecC
Q 047565 93 CIYLCELP 100 (106)
Q Consensus 93 ~~~~~~~~ 100 (106)
....|.-.
T Consensus 100 V~l~~~~~ 107 (121)
T 3j21_U 100 VMIIELNL 107 (121)
T ss_dssp EEEEECCC
T ss_pred eEEEcCcc
Confidence 66666433
No 24
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=43.74 E-value=12 Score=26.93 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=33.6
Q ss_pred hccCCCEEEEEEcCceecCCCCCcccCcc-eEEEcccCCEEEEEEece-----eCceeceeecceeeEEee
Q 047565 33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRT-GRVWNVTKRAIGVEINKQ-----VKFFMPFLFDSFRCIYLC 97 (106)
Q Consensus 33 ~yk~GD~VdIkid~svqKGMPHk~YHGkT-G~V~~v~~~AvgV~VnK~-----V~gk~~~~~~~~~~~~~~ 97 (106)
.++.||.|-|.-- .|-|++ |.|..|.....-|.|... -+-...+-|+.-....+|
T Consensus 48 ~IkkGD~V~Vi~G----------kdKGk~~GkV~~V~~k~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~ 108 (145)
T 2zkr_t 48 PIRKDDEVQVVRG----------HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITR 108 (145)
T ss_dssp BCCTTCEEEECSS----------TTTTCCSEEEEEEETTTTEEEETTCEEECSSCCEEECCBCGGGEEECC
T ss_pred ccCCCCEEEEeec----------CCCCcceeEEEEEECCCCEEEEeeeEeEcCCCceEEeccCHHHEEEEc
Confidence 4778999987432 277999 999999866555555432 113344445554444444
No 25
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=42.38 E-value=11 Score=26.09 Aligned_cols=34 Identities=32% Similarity=0.340 Sum_probs=25.0
Q ss_pred hccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEE
Q 047565 33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEI 76 (106)
Q Consensus 33 ~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~V 76 (106)
.++.||.|-|.-- .+-|++|+|..|....-.|.|
T Consensus 15 ~IkkGD~V~Vi~G----------kdKGk~GkV~~V~~~~~~V~V 48 (115)
T 2zjr_R 15 HFKKGDTVIVLSG----------KHKGQTGKVLLALPRDQKVVV 48 (115)
T ss_dssp SSCTTSEEECCSS----------SSTTCEEEEEEEETTTTEEEE
T ss_pred cccCCCEEEEeEc----------CCCCcEEEEEEEECCCCEEEE
Confidence 5889999987432 267999999999766444444
No 26
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=42.06 E-value=10 Score=23.46 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=16.0
Q ss_pred cCCcccCCCCCchHHHHHhccCCCEEEEEEcC
Q 047565 15 FARPFRKKGYIPLSTYLRTYKIGDYVDVKVNG 46 (106)
Q Consensus 15 fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~ 46 (106)
++-.||++.+.++ +||+|.+...|
T Consensus 36 i~Gk~Rk~~i~i~--------~GD~V~ve~~~ 59 (71)
T 1hr0_W 36 ISGKMRMHYIRIL--------PGDRVVVEITP 59 (71)
T ss_dssp ECHHHHHTCCCCC--------TTCEEEEECCT
T ss_pred EcceEeccCcCCC--------CCCEEEEEEEc
Confidence 4445565555443 89999998765
No 27
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=40.87 E-value=26 Score=26.43 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=23.1
Q ss_pred HHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEE
Q 047565 31 LRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVE 75 (106)
Q Consensus 31 l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~ 75 (106)
-+.|++||.|.| + |.+|+|..++=++..+.
T Consensus 126 ~~pf~vGD~I~i--~-------------~~~G~V~~I~l~~T~i~ 155 (285)
T 3udc_A 126 EDQFSVGDYVTI--N-------------GISGTVEEIGLRVTKIR 155 (285)
T ss_dssp TTSCCTTCEEEE--T-------------TEEEEEEEECSSEEEEE
T ss_pred hCCccCCCEEEE--C-------------CEEEEEEEeeeeEEEEe
Confidence 367999999998 2 56788988887776654
No 28
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=40.46 E-value=13 Score=22.88 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=18.7
Q ss_pred cccCCcccCCCCCchHHHHHhccCCCEEEEEEcC
Q 047565 13 DLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNG 46 (106)
Q Consensus 13 ~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~ 46 (106)
..++-.||++.+-++ +||.|.+...+
T Consensus 33 ~~i~Gk~Rk~~i~i~--------vGD~V~ve~~~ 58 (71)
T 1ah9_A 33 AHISGKMRKNYIRIL--------TGDKVTVELTP 58 (71)
T ss_dssp EEECSSGGGTTCCCC--------TTCEECCEECS
T ss_pred EEEcceEeccCccCC--------CCCEEEEEEec
Confidence 446667787766553 89999998753
No 29
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=36.00 E-value=24 Score=26.65 Aligned_cols=29 Identities=31% Similarity=0.599 Sum_probs=23.5
Q ss_pred HhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEE
Q 047565 32 RTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVE 75 (106)
Q Consensus 32 ~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~ 75 (106)
+.|++||.|.| .|-+|+|..++=++..+.
T Consensus 128 ~pf~vGD~I~i---------------~g~~G~V~~I~l~~T~i~ 156 (286)
T 2vv5_A 128 RPFRAGEYVDL---------------GGVAGTVLSVQIFSTTMR 156 (286)
T ss_dssp CSSCTTCEEES---------------SSCEEEEEEECSSEEEEE
T ss_pred CCccCCCEEEE---------------CCEEEEEEEEEeEEEEEE
Confidence 57999999987 267899999888877654
No 30
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=34.48 E-value=30 Score=20.14 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=16.4
Q ss_pred hccCCCEEEEEE--cCceecCCCCCcccCcceE
Q 047565 33 TYKIGDYVDVKV--NGAVHKGMPHKFYHGRTGR 63 (106)
Q Consensus 33 ~yk~GD~VdIki--d~svqKGMPHk~YHGkTG~ 63 (106)
.|++||++.|.- ++..-+| ...|++|-
T Consensus 21 sf~~Gd~i~v~~~~~~~Ww~g----~~~g~~G~ 49 (67)
T 2bzy_A 21 ALEVGDIVKVTRMNINGQWEG----EVNGRKGL 49 (67)
T ss_dssp CBCTTCEEEEEEECSSSEEEE----EETTEEEE
T ss_pred ccCCCCEEEEEEecCCCeEEE----EeCCcEEE
Confidence 489999999854 3344444 23455553
No 31
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=32.94 E-value=12 Score=23.04 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=15.5
Q ss_pred CCCchHHHH----HhccCCCEEEEEEc
Q 047565 23 GYIPLSTYL----RTYKIGDYVDVKVN 45 (106)
Q Consensus 23 G~~~ls~~l----~~yk~GD~VdIkid 45 (106)
|+.++|.+. ..|++||.|.+++-
T Consensus 31 Gllh~sel~~~~~~~~~~Gd~V~v~V~ 57 (80)
T 2k52_A 31 GLLRPRDMISLRLENLNVGDEIIVQAI 57 (80)
T ss_dssp EEECGGGCSSCCGGGCCTTCEEEEEEE
T ss_pred EEEEHHHCCcccceeeCCCCEEEEEEE
Confidence 444555433 47999999988764
No 32
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=32.64 E-value=29 Score=20.20 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=18.5
Q ss_pred hccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCC
Q 047565 33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKR 70 (106)
Q Consensus 33 ~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~ 70 (106)
.|++||.|.|.-- | |.|..|.|..+...
T Consensus 4 ~~~~Gd~V~V~~G-------p---f~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 4 AFREGDQVRVVSG-------P---FADFTGTVTEINPE 31 (58)
T ss_dssp SCCTTCEEEECSG-------G---GTTCEEEEEEEETT
T ss_pred ccCCCCEEEEeec-------C---CCCcEEEEEEEcCC
Confidence 4789999988422 3 45667777766543
No 33
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=31.90 E-value=23 Score=24.27 Aligned_cols=34 Identities=38% Similarity=0.519 Sum_probs=24.2
Q ss_pred hccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEE
Q 047565 33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEI 76 (106)
Q Consensus 33 ~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~V 76 (106)
..+.||.|-|. -+ .+-|++|.|..|.....-|.|
T Consensus 6 ~IkkGD~V~Vi-~G---------kdKGk~GkV~~V~~~~~~ViV 39 (110)
T 3v2d_Y 6 HVKKGDTVLVA-SG---------KYKGRVGKVKEVLPKKYAVIV 39 (110)
T ss_dssp SCCTTSEEEEC-SS---------TTTTCEEEEEEEEGGGTEEEE
T ss_pred ccCCCCEEEEe-Ec---------CCCCeEeEEEEEECCCCEEEE
Confidence 36789999663 22 478999999999876444443
No 34
>1v76_A RNAse P protein PH1771P; RNA binding protein, archaeal RNAse P protein; 2.00A {Pyrococcus horikoshii} SCOP: b.137.1.1
Probab=31.66 E-value=65 Score=21.27 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=32.8
Q ss_pred CCCcccCcceEEEcccCCEEEEEEeceeCceeceeecceeeEEeeecCch
Q 047565 53 PHKFYHGRTGRVWNVTKRAIGVEINKQVKFFMPFLFDSFRCIYLCELPDD 102 (106)
Q Consensus 53 PHk~YHGkTG~V~~v~~~AvgV~VnK~V~gk~~~~~~~~~~~~~~~~~~~ 102 (106)
+++.|-|-.|.|..=|.+++.|+.+ -+..+=---|++.-++||.
T Consensus 28 ~~pslVGi~GiVV~ET~ntf~I~t~------~~~~VPK~~~vF~f~~~~~ 71 (96)
T 1v76_A 28 THPAFVGIEGYVIDETRNMLVIAGD------RIWKVPKDVSIFEFEADDG 71 (96)
T ss_dssp SSGGGTTCEEEEEEECSSEEEEESS------SEEEEESTTEEEEEECTTS
T ss_pred CCCCccCcEEEEEEeccceEEEEcC------CEEEEECCCEEEEEEECCC
Confidence 6889999999999999999998862 2233333457777788853
No 35
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=30.93 E-value=24 Score=25.45 Aligned_cols=15 Identities=33% Similarity=0.944 Sum_probs=13.0
Q ss_pred HhccCCCEEEEEEcC
Q 047565 32 RTYKIGDYVDVKVNG 46 (106)
Q Consensus 32 ~~yk~GD~VdIkid~ 46 (106)
..|.+||++||-|-|
T Consensus 125 ~rF~iGDyidvaI~p 139 (143)
T 4a6q_A 125 QKFQIGDYLDIAITP 139 (143)
T ss_dssp GTCCTTCEEEEEEEC
T ss_pred CCCcCCCEEEEEEeC
Confidence 479999999998876
No 36
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=30.65 E-value=31 Score=20.16 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=16.3
Q ss_pred hccCCCEEEEEE--cCceecCCCCCcccCcceE
Q 047565 33 TYKIGDYVDVKV--NGAVHKGMPHKFYHGRTGR 63 (106)
Q Consensus 33 ~yk~GD~VdIki--d~svqKGMPHk~YHGkTG~ 63 (106)
.|++||+|.|.- ++..-.| ...|++|-
T Consensus 26 s~~~Gd~i~v~~~~~~gWw~g----~~~g~~G~ 54 (67)
T 2eyx_A 26 ALEVGELVKVTKINVSGQWEG----ECNGKRGH 54 (67)
T ss_dssp CBCSSEEEEEEEECTTSEEEE----EETTEEEE
T ss_pred ccCCCCEEEEEEecCCCEEEE----EECCCEEE
Confidence 489999999854 3334444 23455553
No 37
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.53 E-value=36 Score=21.00 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=16.9
Q ss_pred hccCCCEEEEEE--cCceecCCCCCcccCcceE
Q 047565 33 TYKIGDYVDVKV--NGAVHKGMPHKFYHGRTGR 63 (106)
Q Consensus 33 ~yk~GD~VdIki--d~svqKGMPHk~YHGkTG~ 63 (106)
.|++||+|.|.- +...-+| ..+|++|-
T Consensus 36 sf~~Gd~i~v~~~~~~~Ww~g----~~~g~~G~ 64 (88)
T 2dbk_A 36 ALEVGDIVKVTRMNINGQWEG----EVNGRKGL 64 (88)
T ss_dssp CBCTTCEEEEEEECTTSCEEE----ECSSCEEE
T ss_pred cCCCCCEEEEEEecCCCEEEE----EeCCCEEE
Confidence 489999999854 3344455 23566654
No 38
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=29.97 E-value=56 Score=21.11 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=30.2
Q ss_pred ccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCE----EEEEEec
Q 047565 34 YKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRA----IGVEINK 78 (106)
Q Consensus 34 yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~A----vgV~VnK 78 (106)
.+.|+.|-|. .|-.+|.+-.|.|..|.+.. +.|...+
T Consensus 2 i~rGs~VrIl--------r~eSywy~~vG~V~~Vd~~~~~ypV~VrFek 42 (70)
T 1qp2_A 2 VQRGSKVRIL--------RPESYWFQDVGTVASVDQSGIKYPVIVRFEK 42 (70)
T ss_dssp CCTTCEEEEC--------CTTSTTTTCEEEEEEECCSSCSCSEEEECSS
T ss_pred cCCCCEEEEc--------CccceeecceeEEEEEeCCCcEeeEEEEecc
Confidence 3578888884 57889999999999999987 7776666
No 39
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=29.97 E-value=27 Score=24.69 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=37.1
Q ss_pred ccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEE-----eceeCceeceeecceeeEEeee
Q 047565 34 YKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEI-----NKQVKFFMPFLFDSFRCIYLCE 98 (106)
Q Consensus 34 yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~V-----nK~V~gk~~~~~~~~~~~~~~~ 98 (106)
.+.||.|-|. -| .|-|++|.|..|.....-|.| .|.-++...+-|+.-.....|.
T Consensus 50 IkkgD~V~Vi-~G---------kdKGk~GkV~~V~~kk~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~~ 109 (127)
T 3u5e_Y 50 IRRDDEVLVV-RG---------SKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKL 109 (127)
T ss_dssp CCTTCEEEEC-SS---------TTTTCEEEEEEEEGGGTEEEEETCEEECSSSCEEECCBCGGGEEEEEC
T ss_pred ccCCCEEEEe-ec---------CCCCccceEEEEECCCCEEEEeCeEEECCCCcEEEcccchHHEEEEcc
Confidence 4689999653 22 488999999999775433443 2334566777888877776663
No 40
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=29.14 E-value=80 Score=22.18 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=21.0
Q ss_pred CCCEEEEEEcCceecCCCCCcccCcceE----------EEcccCCEEEEEEece
Q 047565 36 IGDYVDVKVNGAVHKGMPHKFYHGRTGR----------VWNVTKRAIGVEINKQ 79 (106)
Q Consensus 36 ~GD~VdIkid~svqKGMPHk~YHGkTG~----------V~~v~~~AvgV~VnK~ 79 (106)
.||+++| +|+--+.--| -.|||-. +....+..+-|+|+++
T Consensus 35 DGdYIHI--mP~~~~~~~~--~~~KTtS~H~s~Vv~~K~s~k~P~~FKivV~k~ 84 (121)
T 3ulb_A 35 DGDYIYI--VPPEGRIHWH--DNVKTKSLHISQVVLVKKSKRVPEHFKIFVRRE 84 (121)
T ss_dssp ETTEEEE--ECCC---------CCCCEEEEGGGEEEEEECSSCTTEEEEEECCT
T ss_pred cCceEEE--ecCCCCcccc--cCCcEEEEEEeeEEEEEecccCCCcEEEEEEcc
Confidence 3999999 4542211112 1566642 3445566777777775
No 41
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=28.85 E-value=73 Score=22.60 Aligned_cols=63 Identities=22% Similarity=0.193 Sum_probs=46.8
Q ss_pred CCchHHHHHhccCCCEEEEEEcCceecC---------CCCCcccC------------------cceEEEcccCCEEEEEE
Q 047565 24 YIPLSTYLRTYKIGDYVDVKVNGAVHKG---------MPHKFYHG------------------RTGRVWNVTKRAIGVEI 76 (106)
Q Consensus 24 ~~~ls~~l~~yk~GD~VdIkid~svqKG---------MPHk~YHG------------------kTG~V~~v~~~AvgV~V 76 (106)
++.+...|..-++||.+.+.+.|..--| +|-..|-+ .+++|..|+...+.|-.
T Consensus 42 ipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~v~~v~~~~f~~~~~~~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~ 121 (171)
T 2k8i_A 42 ISGLETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDG 121 (171)
T ss_dssp CSHHHHHHTTCCTTCEEEEEEETTTSSCCCCTTSEEEEEGGGGTTSSCCCTTCEEEEEETTEEEEEEEEEECSSEEEEES
T ss_pred chHHHHHHcCCCCCCEEEEEECcHHhcCCCChhhEEEeeHHHCCcccCccCCcEEEEECCCCcEEEEEEEEcCCEEEEeC
Confidence 4468899999999999999998864333 22222221 35679999999999999
Q ss_pred eceeCceece
Q 047565 77 NKQVKFFMPF 86 (106)
Q Consensus 77 nK~V~gk~~~ 86 (106)
|-..-|+-|.
T Consensus 122 NHPLAGk~L~ 131 (171)
T 2k8i_A 122 NHMLAGQNLK 131 (171)
T ss_dssp CCSSCCCEEE
T ss_pred CCCCCCCeEE
Confidence 9888888764
No 42
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=28.82 E-value=58 Score=21.65 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=20.2
Q ss_pred CCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEE
Q 047565 37 GDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEI 76 (106)
Q Consensus 37 GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~V 76 (106)
||.|-|.- | .+-|++|.|..+.....-|.|
T Consensus 1 GD~V~Vi~------G----kdKGk~GkV~~V~~~~~~ViV 30 (96)
T 2ftc_N 1 GDTVEILE------G----KDAGKQGKVVQVIRQRNWVVV 30 (96)
T ss_pred CCEEEEeE------c----CCCCcEEEEEEEECCCCEEEE
Confidence 67776643 1 367999999999766544444
No 43
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=28.32 E-value=32 Score=20.21 Aligned_cols=13 Identities=38% Similarity=0.376 Sum_probs=10.7
Q ss_pred hccCCCEEEEEEc
Q 047565 33 TYKIGDYVDVKVN 45 (106)
Q Consensus 33 ~yk~GD~VdIkid 45 (106)
.|+.||+|.|.-.
T Consensus 27 s~~~Gd~i~v~~~ 39 (73)
T 2k9g_A 27 TIKEGDIVTLINK 39 (73)
T ss_dssp CBCTTCEEEEEEC
T ss_pred eECCCCEEEEEEC
Confidence 4899999999754
No 44
>4ayb_G DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_G 2y0s_G 2waq_G 4b1o_G 4b1p_V 3hkz_G
Probab=27.99 E-value=53 Score=23.49 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=29.7
Q ss_pred HHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccC
Q 047565 31 LRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTK 69 (106)
Q Consensus 31 l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~ 69 (106)
|..|++||.|.|.+.-+..+=+-| .|-|+ |-|+.+++
T Consensus 46 i~~f~~gekV~i~ISrekp~~~~~-dFCGh-GYvVt~~k 82 (132)
T 4ayb_G 46 INIFSQKEKVKAFISKNRLSYTND-DFCGH-GYIVTELK 82 (132)
T ss_dssp TCCCCSSCCCEEEEESSCCCCCTT-SEEBC-EEEEETTT
T ss_pred hhcccCCCeEEEEEecCCcccccC-ccccc-eEEEEEee
Confidence 568999999999999888877776 79887 66665544
No 45
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=27.54 E-value=35 Score=19.46 Aligned_cols=12 Identities=17% Similarity=0.512 Sum_probs=10.2
Q ss_pred hccCCCEEEEEE
Q 047565 33 TYKIGDYVDVKV 44 (106)
Q Consensus 33 ~yk~GD~VdIki 44 (106)
.|+.||+|.|.-
T Consensus 24 s~~~Gd~i~v~~ 35 (64)
T 2jte_A 24 TFREGEIIHLIS 35 (64)
T ss_dssp CBCTTCEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 489999999975
No 46
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.73 E-value=41 Score=19.58 Aligned_cols=12 Identities=25% Similarity=0.044 Sum_probs=9.7
Q ss_pred hccCCCEEEEEE
Q 047565 33 TYKIGDYVDVKV 44 (106)
Q Consensus 33 ~yk~GD~VdIki 44 (106)
.|++||+|.|.-
T Consensus 25 s~~~Gd~i~v~~ 36 (68)
T 2dmo_A 25 QVMPGNIVFVLK 36 (68)
T ss_dssp CCCTTCEEEECE
T ss_pred CCCCCCEEEEEE
Confidence 489999999853
No 47
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=26.40 E-value=34 Score=20.74 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=17.1
Q ss_pred hccCCCEEEEEE--cCc-eecCCCCCcccCcceE
Q 047565 33 TYKIGDYVDVKV--NGA-VHKGMPHKFYHGRTGR 63 (106)
Q Consensus 33 ~yk~GD~VdIki--d~s-vqKGMPHk~YHGkTG~ 63 (106)
.|+.||+|.|.- +.. .-+|. ..|++|-
T Consensus 28 sf~~Gd~i~v~~~~~~~gWw~g~----~~g~~G~ 57 (80)
T 2i0n_A 28 PFKRNDIITITFKDQENKWFMGQ----LNGKEGS 57 (80)
T ss_dssp CBCSSEEEEEEEESSSSSEEEEE----ETTEEEE
T ss_pred CCCCCCEEEEEEecCCCCEEEEE----ECCcEEE
Confidence 489999999965 333 55553 3555553
No 48
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=25.40 E-value=24 Score=30.07 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=30.3
Q ss_pred HHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEE
Q 047565 31 LRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIG 73 (106)
Q Consensus 31 l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~Avg 73 (106)
|--|..||.|-+.. .+..-|.=.|.||+..+.|+.|--+.
T Consensus 397 L~RYr~GD~v~v~~---f~~~~p~i~f~gR~~~~l~~~Gekl~ 436 (581)
T 4eql_A 397 LYRMRVGDIVLVTG---FYNNAPQFKFVRRENVVLSIDSDKTN 436 (581)
T ss_dssp CCSEECCEEEEEEE---EETTEEEEEEEEETTEEECSSSCCEE
T ss_pred eeeEEcCCEEEEcc---cCCCCcEEEEEEecCCEEEeeeeECC
Confidence 45689999999876 22334777999999999999886443
No 49
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=24.38 E-value=60 Score=17.82 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=15.9
Q ss_pred hccCCCEEEEEEc--CceecCCCCCcccCcce
Q 047565 33 TYKIGDYVDVKVN--GAVHKGMPHKFYHGRTG 62 (106)
Q Consensus 33 ~yk~GD~VdIkid--~svqKGMPHk~YHGkTG 62 (106)
.|++||.+.|.-. +..-.| ...|++|
T Consensus 19 s~~~Gd~i~v~~~~~~~W~~g----~~~g~~G 46 (58)
T 4e6r_A 19 SLVXGSRVTVMEXCSDGWWRG----SYNGQIG 46 (58)
T ss_dssp CBCTTCEEEEEEECTTSEEEE----EETTEEE
T ss_pred eEeCCCEEEEeEcCCCCEEEE----EECCcEE
Confidence 5899999988543 333444 3455554
No 50
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.96 E-value=27 Score=22.49 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=12.1
Q ss_pred HhccCCCEEEEEEcC
Q 047565 32 RTYKIGDYVDVKVNG 46 (106)
Q Consensus 32 ~~yk~GD~VdIkid~ 46 (106)
..|++||.|.+++-.
T Consensus 59 ~~~~~Gd~V~VkV~~ 73 (103)
T 2eqs_A 59 DVVSKGQRVKVKVLS 73 (103)
T ss_dssp HHCCTTCEEEEEEEE
T ss_pred cEeCCCCEEEEEEEE
Confidence 569999999988753
No 51
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=23.62 E-value=37 Score=21.13 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=16.7
Q ss_pred hccCCCEEEEEE----cCceecCCCCCcccCcceE
Q 047565 33 TYKIGDYVDVKV----NGAVHKGMPHKFYHGRTGR 63 (106)
Q Consensus 33 ~yk~GD~VdIki----d~svqKGMPHk~YHGkTG~ 63 (106)
.|+.||++.|.- +...-.|. ..|++|-
T Consensus 23 sf~~Gd~i~v~~~~~~~~gWw~g~----~~g~~G~ 53 (93)
T 1uff_A 23 SFNSGDIIQVDEKTVGEPGWLYGS----FQGNFGW 53 (93)
T ss_dssp CBCTTCEEEECSSCCCSSSEEEEE----ETTEEEE
T ss_pred CCCCCCEEEEeEccCCCCCEEEEE----ECCCEEE
Confidence 489999999854 33444444 3455553
No 52
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=23.11 E-value=55 Score=18.55 Aligned_cols=12 Identities=17% Similarity=0.373 Sum_probs=9.8
Q ss_pred hccCCCEEEEEE
Q 047565 33 TYKIGDYVDVKV 44 (106)
Q Consensus 33 ~yk~GD~VdIki 44 (106)
.|+.||++.|.-
T Consensus 19 s~~~Gd~i~v~~ 30 (62)
T 2j6f_A 19 TIRVGEIIRNVK 30 (62)
T ss_dssp CBCTTCEEEEEE
T ss_pred CCcCCCEEEEEE
Confidence 489999998864
No 53
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=23.04 E-value=68 Score=18.10 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=10.5
Q ss_pred hccCCCEEEEEEc
Q 047565 33 TYKIGDYVDVKVN 45 (106)
Q Consensus 33 ~yk~GD~VdIkid 45 (106)
.|+.||+|.|.-.
T Consensus 23 s~~~Gd~i~v~~~ 35 (62)
T 1k4u_S 23 EFQEGDIILVLSK 35 (62)
T ss_dssp CBCSSCEEEEEEE
T ss_pred cCCCCCEEEEEEe
Confidence 4899999999653
No 54
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=22.75 E-value=1.2e+02 Score=25.10 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=27.9
Q ss_pred HhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEece
Q 047565 32 RTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQ 79 (106)
Q Consensus 32 ~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~ 79 (106)
..|..||.|.|.-.. +-.... -+|.|+.++...+.|.+...
T Consensus 79 ~~~~~Gd~v~~~~~~----~~~~~~---~~g~v~~~~~~~i~v~~~~~ 119 (646)
T 4b3f_X 79 NSFTSGDIVGLYDAA----NEGSQL---ATGILTRVTQKSVTVAFDES 119 (646)
T ss_dssp CCCCTTCEEEEEETT----TTSCCC---EEEEEEEEETTEEEEECC--
T ss_pred CCCCCCCEEEEEecC----CCCCce---EEEEEEEEeCCEEEEEECCc
Confidence 368999999985322 111222 36899999999999988764
No 55
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=22.64 E-value=76 Score=20.72 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=24.1
Q ss_pred cCCCEEEEEEcCceecCCCCCcccCcceEEEcccCC
Q 047565 35 KIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKR 70 (106)
Q Consensus 35 k~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~ 70 (106)
+.||+|-|. .|-.++...+|.|.+|.+.
T Consensus 2 ~RGskVrIl--------R~ESYWyn~vGtVasVD~s 29 (75)
T 1jb0_E 2 QRGSKVKIL--------RPESYWYNEVGTVASVDQT 29 (75)
T ss_dssp CTTCEEEEC--------CTTCTTBTCEEEEEEECCC
T ss_pred CCCCEEEEc--------cccceeecCcceEEEEecC
Confidence 578999885 5888999999999999886
No 56
>2zae_A Ribonuclease P protein component 1; ribonuclease P protein subunits, hetero dimer, hydrolase, TR processing; 2.21A {Pyrococcus horikoshii} PDB: 2ki7_A
Probab=22.36 E-value=1.1e+02 Score=21.43 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=38.0
Q ss_pred CCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEeceeCceeceeecceeeEEeeecCch
Q 047565 36 IGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVKFFMPFLFDSFRCIYLCELPDD 102 (106)
Q Consensus 36 ~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V~gk~~~~~~~~~~~~~~~~~~~ 102 (106)
.|-.|.|. --+++.|-|-.|.|+.=|.+.+.|+.+ -+..+----|++.-+|||.
T Consensus 49 ~Ga~v~Vv-------~S~~pslVGi~GiVV~ETknTf~I~t~------~~k~VPK~~~vF~f~l~dg 102 (127)
T 2zae_A 49 IGLRVRIV-------GSTHPAFVGIEGYVIDETRNMLVIAGD------RIWKVPKDVSIFEFEADDG 102 (127)
T ss_dssp TTCEEEEE-------EESSGGGTTCEEEEEEEETTEEEEESS------SEEEEESTTEEEEEECTTS
T ss_pred cCCEEEEE-------EcCCCCccCcEEEEEEcccceEEEEcC------CEEEEECCCeEEEEEeCCC
Confidence 46666663 236889999999999999999998862 2233333457777788853
No 57
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=22.28 E-value=74 Score=18.26 Aligned_cols=12 Identities=17% Similarity=0.625 Sum_probs=10.0
Q ss_pred hccCCCEEEEEE
Q 047565 33 TYKIGDYVDVKV 44 (106)
Q Consensus 33 ~yk~GD~VdIki 44 (106)
.|+.||++.|.-
T Consensus 31 s~~~Gd~i~v~~ 42 (72)
T 4glm_A 31 DFEVGDKIRILA 42 (72)
T ss_dssp CBCTTCEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 589999999864
No 58
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.17 E-value=44 Score=19.41 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=17.5
Q ss_pred hccCCCEEEEEEc----CceecCCCCCcccCcceEE
Q 047565 33 TYKIGDYVDVKVN----GAVHKGMPHKFYHGRTGRV 64 (106)
Q Consensus 33 ~yk~GD~VdIkid----~svqKGMPHk~YHGkTG~V 64 (106)
.|++||+|.|.-. +..-.|. ..|++|-|
T Consensus 25 s~~~Gd~i~v~~~~~~~~~W~~g~----~~g~~G~~ 56 (70)
T 2da9_A 25 TIKEGDIVTLINKDCIDVGWWEGE----LNGRRGVF 56 (70)
T ss_dssp CCCTTEEEEEEECCCSSTTEEEEE----CSSCEEEE
T ss_pred eEcCCCEEEEEECCCCCCCeEEEE----ECCcEEEe
Confidence 4899999999753 3344443 25666543
No 59
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.81 E-value=65 Score=19.25 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=9.9
Q ss_pred hccCCCEEEEEE
Q 047565 33 TYKIGDYVDVKV 44 (106)
Q Consensus 33 ~yk~GD~VdIki 44 (106)
.|++||+|.|.-
T Consensus 35 sf~~Gd~i~v~~ 46 (78)
T 2ed0_A 35 SFQEGAIIYVIK 46 (78)
T ss_dssp CBCSSCEEEEEE
T ss_pred cccCCCEEEEEE
Confidence 488999999865
No 60
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=20.80 E-value=72 Score=18.58 Aligned_cols=12 Identities=33% Similarity=0.420 Sum_probs=10.0
Q ss_pred hccCCCEEEEEE
Q 047565 33 TYKIGDYVDVKV 44 (106)
Q Consensus 33 ~yk~GD~VdIki 44 (106)
.|+.||+|.|.-
T Consensus 19 s~~~Gd~i~v~~ 30 (65)
T 2nwm_A 19 TLQKGDIVYIHK 30 (65)
T ss_dssp CBCTTCEEEEEE
T ss_pred CCcCCCEEEEEE
Confidence 489999999864
No 61
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.62 E-value=51 Score=19.61 Aligned_cols=12 Identities=8% Similarity=0.337 Sum_probs=10.0
Q ss_pred hccCCCEEEEEE
Q 047565 33 TYKIGDYVDVKV 44 (106)
Q Consensus 33 ~yk~GD~VdIki 44 (106)
.|+.||+|.|.-
T Consensus 25 s~~~Gd~i~v~~ 36 (78)
T 2yuo_A 25 GFRKNDIITIIS 36 (78)
T ss_dssp CBCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 489999999964
No 62
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=20.36 E-value=1.6e+02 Score=19.62 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=38.5
Q ss_pred HHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEeceeCceeceeecceeeEEeeecCc
Q 047565 28 STYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVKFFMPFLFDSFRCIYLCELPD 101 (106)
Q Consensus 28 s~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V~gk~~~~~~~~~~~~~~~~~~ 101 (106)
++.+.-==.|-.|.|. --+++.|-|-.|.|..=|.+++.|+..+. -+.+.| --|++.-++|+
T Consensus 8 ~~L~~adl~G~~v~Vv-------~S~~pslVGi~GiVV~ETkntf~I~t~~~--~k~VPK---~~~vF~f~l~~ 69 (102)
T 1ts9_A 8 VELIARDWIGLMVEVV-------ESPNHSEVGIKGEVVDETQNTLKIMTEKG--LKVVAK---RGRTFRVWYKG 69 (102)
T ss_dssp HHHHHSCCTTCEEEEE-------ECSSGGGTTCEEEEEEECSSEEEEEESSS--EEEEEC---TTCEEEEEETT
T ss_pred hHHhhhhhcCCEEEEE-------EcCCCCccCcEEEEEEeccceEEEEeCCc--EEEEEC---CCEEEEEEECC
Confidence 3333333346666552 23688999999999999999999886222 223322 33555556654
No 63
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=20.18 E-value=57 Score=18.25 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=10.5
Q ss_pred hccCCCEEEEEEc
Q 047565 33 TYKIGDYVDVKVN 45 (106)
Q Consensus 33 ~yk~GD~VdIkid 45 (106)
.|++||+|.|.-.
T Consensus 21 s~~~Gd~i~v~~~ 33 (60)
T 1oot_A 21 PFRKGDVITILKK 33 (60)
T ss_dssp CBCTTCEEEEEEC
T ss_pred eEcCCCEEEEEEe
Confidence 3899999999653
No 64
>2lqk_A Transcriptional regulator; RNA polymerase interacting domain, transcription regulator; NMR {Thermus thermophilus}
Probab=25.42 E-value=22 Score=22.06 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=9.9
Q ss_pred HHhccCCCEEEE
Q 047565 31 LRTYKIGDYVDV 42 (106)
Q Consensus 31 l~~yk~GD~VdI 42 (106)
|..|++||+|.-
T Consensus 4 m~~f~~GD~VVy 15 (70)
T 2lqk_A 4 MKEFRPGDKVVL 15 (70)
Confidence 568999999865
Done!