Query 047567
Match_columns 121
No_of_seqs 167 out of 1035
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 21:48:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1om2_A Protein (mitochondrial 20.1 95 0.0032 21.3 3.3 23 18-40 40-66 (95)
2 1as5_A Conotoxin Y-PIIIE; neur 18.9 36 0.0012 18.8 0.7 12 43-54 7-18 (26)
3 3s0r_A De novo designed helica 17.2 66 0.0022 18.1 1.6 14 52-65 6-19 (30)
4 4fcc_A Glutamate dehydrogenase 16.0 57 0.002 27.9 1.6 55 33-94 82-141 (450)
5 3s8f_C Cytochrome C oxidase po 15.6 51 0.0017 19.1 0.9 25 93-118 3-27 (34)
6 2rg8_A Programmed cell death p 15.1 37 0.0013 24.6 0.2 34 50-86 131-164 (165)
7 1leh_A Leucine dehydrogenase; 14.0 70 0.0024 26.0 1.6 53 38-94 36-90 (364)
8 2fa8_A Hypothetical protein AT 13.8 58 0.002 22.6 0.9 22 44-65 16-37 (105)
9 3dex_A SAV_2001; alpha-beta pr 13.6 64 0.0022 22.7 1.1 21 44-64 21-41 (107)
10 2nx6_A Nematocyst outer WALL a 13.6 53 0.0018 18.1 0.5 10 44-53 3-12 (27)
No 1
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=20.07 E-value=95 Score=21.34 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=18.6
Q ss_pred HHHHHHHHHHH----HHHHHHhhhccC
Q 047567 18 FEFLVNSIKSL----KWVLVKTGEISP 40 (121)
Q Consensus 18 f~~~v~~~~~l----~lIr~YQ~~ISP 40 (121)
.+|+.|++.-. .|+..||+.++|
T Consensus 40 v~Hf~nAl~Vc~qP~~LL~i~q~TlP~ 66 (95)
T 1om2_A 40 VDHLTNAIAVCGQPQQLLQVLQQTLPP 66 (95)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCCH
Confidence 47888887643 589999999987
No 2
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=18.94 E-value=36 Score=18.76 Aligned_cols=12 Identities=42% Similarity=0.825 Sum_probs=9.5
Q ss_pred CCCCCcCCCcHH
Q 047567 43 PRSCRYVPTCSE 54 (121)
Q Consensus 43 g~~CRf~PTCSe 54 (121)
-.+||=+|.||.
T Consensus 7 yg~cr~~pgc~~ 18 (26)
T 1as5_A 7 YGKCRRYPGCSS 18 (26)
T ss_dssp TTCCCCCTTCTT
T ss_pred ccccccCCCcch
Confidence 457888999985
No 3
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=17.15 E-value=66 Score=18.12 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHhCh
Q 047567 52 CSEYSMQAYKKYGV 65 (121)
Q Consensus 52 CSeYa~eAI~k~G~ 65 (121)
--|||.||++|--+
T Consensus 6 aleyaqqalekaql 19 (30)
T 3s0r_A 6 ALEYAQQALEKAQL 19 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45899999998643
No 4
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E
Probab=16.04 E-value=57 Score=27.88 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=32.5
Q ss_pred HHhhhccCCCCC---CCCcCCCcHHHHHHHHHHhChhHHHHHHHHHHhhcCCCC--CCcccCCcccc
Q 047567 33 VKTGEISPLMPR---SCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLG--NSVALFSVLKF 94 (121)
Q Consensus 33 ~YQ~~ISP~~g~---~CRf~PTCSeYa~eAI~k~G~~kG~~Lt~~RIlRCnP~~--~gG~Dyp~~k~ 94 (121)
.||---|-..|| -|||+|+.+.= -++ ..+.+||.+==+---|++ +||+++-|.++
T Consensus 82 GyRvqhn~alGP~kGG~Rfhp~v~l~---ev~----~La~~mT~KnAl~gLP~GGgKggi~~DPk~~ 141 (450)
T 4fcc_A 82 AWRVQFSSAIGPYKGGMRFHPSVNLS---ILK----FLGFEQTFKNALTTLPMGGGKGGSDFDPKGK 141 (450)
T ss_dssp EEEEEEECSSSSEEEEEEECTTCCHH---HHH----HHHHHHHHHHHHTTSSCCEEEEEESCCCTTC
T ss_pred EEEEEECCCCCCCCCceEecCCCCHH---HHH----HHHHHHHHHHHHcCCCCCCCceEEecCCCcC
Confidence 444443444443 49999999842 222 245556655433334875 78999888654
No 5
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=15.63 E-value=51 Score=19.10 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=17.7
Q ss_pred cccccccchheehhHHHHHHHHHHHh
Q 047567 93 KFIFGTLLSVVYVGWFRIIAAWIELF 118 (121)
Q Consensus 93 k~~~~~~~~~~~~~~~~~i~~w~~~~ 118 (121)
..+-+|+.+|..+|.+ |+..|+-.|
T Consensus 3 ~~l~GTl~~V~ilg~~-I~i~W~~vf 27 (34)
T 3s8f_C 3 EKPKGALAVILVLTLT-ILVFWLGVY 27 (34)
T ss_dssp -CCHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred CCccceehHHHHHHHH-HHHHHHHHH
Confidence 3456778888888876 566788765
No 6
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=15.13 E-value=37 Score=24.63 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=12.6
Q ss_pred CCcHHHHHHHHHHhChhHHHHHHHHHHhhcCCCCCCc
Q 047567 50 PTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGNSV 86 (121)
Q Consensus 50 PTCSeYa~eAI~k~G~~kG~~Lt~~RIlRCnP~~~gG 86 (121)
|-|+ ++.+|+.+--.....-++..|+.|| |+.||
T Consensus 131 ~~~~-~~~~~l~~a~~ll~~~~~~~~~~~~--Wg~g~ 164 (165)
T 2rg8_A 131 VDCV-QARAALDKATVLLSMSKGGKRKDSV--WGSGG 164 (165)
T ss_dssp CCCH-HHHHHHHHHHHHHHTC----------------
T ss_pred cCch-HHHHHHHHHHHHHhccccHHHHHhh--cCCCC
Confidence 5555 6667777655555666777899988 65554
No 7
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=14.03 E-value=70 Score=25.98 Aligned_cols=53 Identities=15% Similarity=0.064 Sum_probs=31.8
Q ss_pred ccCCCCCCCCcCCCcHHHHHHHHHHhChhHHHHHHHHHHhhcCCC--CCCcccCCcccc
Q 047567 38 ISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPL--GNSVALFSVLKF 94 (121)
Q Consensus 38 ISP~~g~~CRf~PTCSeYa~eAI~k~G~~kG~~Lt~~RIlRCnP~--~~gG~Dyp~~k~ 94 (121)
+-|.+|. |||+|+.++= +++.+- ...+.+|+.+==+-=-|+ ++||+++.|.++
T Consensus 36 ~Gp~kGG-~R~~p~v~~~--~~~~e~-~~La~~mt~K~al~~lp~GG~Kggi~~dP~~~ 90 (364)
T 1leh_A 36 LGPALGG-ARMWTYNAEE--EAIEDA-LRLARGMTYKNAAAGLNLGGGKTVIIGDPFAD 90 (364)
T ss_dssp SSSEECC-EEEECCSCHH--HHHHHH-HHHHHHHHHHHHHTTCSCEEEEEEEESCTTTT
T ss_pred CCCCCCc-EEecCCCChH--HHHHHH-HHHHHHHHHHHHhcCCCCcCcceEEeCCCCCC
Confidence 3455544 9999999842 233221 124566666543333487 489999988763
No 8
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=13.83 E-value=58 Score=22.58 Aligned_cols=22 Identities=5% Similarity=0.286 Sum_probs=19.9
Q ss_pred CCCCcCCCcHHHHHHHHHHhCh
Q 047567 44 RSCRYVPTCSEYSMQAYKKYGV 65 (121)
Q Consensus 44 ~~CRf~PTCSeYa~eAI~k~G~ 65 (121)
..|+|.|-+.+|+.+..++++-
T Consensus 16 ~~C~~~~Ra~~laqeLl~tF~~ 37 (105)
T 2fa8_A 16 TQCNWLLRAGWMAQEILQTFAS 37 (105)
T ss_dssp TTTTCHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHHcCc
Confidence 5799999999999999999964
No 9
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=13.65 E-value=64 Score=22.71 Aligned_cols=21 Identities=14% Similarity=0.507 Sum_probs=19.6
Q ss_pred CCCCcCCCcHHHHHHHHHHhC
Q 047567 44 RSCRYVPTCSEYSMQAYKKYG 64 (121)
Q Consensus 44 ~~CRf~PTCSeYa~eAI~k~G 64 (121)
..|+|.|-+..||.+.+++++
T Consensus 21 ~~C~w~lRa~~laqeLl~tF~ 41 (107)
T 3dex_A 21 TQCRWLPRAAWLAQELLTTFE 41 (107)
T ss_dssp TTTTCHHHHHHHHHHHHHHST
T ss_pred CCCCChHHHHHHHHHHHHhcc
Confidence 479999999999999999987
No 10
>2nx6_A Nematocyst outer WALL antigen; disulfide rich, turns, structural protein; NMR {Hydra vulgaris}
Probab=13.56 E-value=53 Score=18.11 Aligned_cols=10 Identities=50% Similarity=1.125 Sum_probs=6.0
Q ss_pred CCCCcCCCcH
Q 047567 44 RSCRYVPTCS 53 (121)
Q Consensus 44 ~~CRf~PTCS 53 (121)
.+|.-.||||
T Consensus 3 sscpqfpscs 12 (27)
T 2nx6_A 3 SSCPQFPSCS 12 (27)
T ss_dssp CSSTTCTTCC
T ss_pred CcCCCCCCCC
Confidence 3566666665
Done!