Query 047567
Match_columns 121
No_of_seqs 167 out of 1035
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 21:48:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047567.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047567hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r57a_ d.108.1.1 (A:) Hypothe 21.0 18 0.0013 22.4 1.4 16 48-64 71-86 (102)
2 d1bgva2 c.58.1.1 (A:1-194) Glu 17.0 26 0.0019 25.1 1.7 49 39-95 86-136 (194)
3 d1om2a_ a.23.4.1 (A:) Mitochon 15.5 48 0.0035 21.2 2.6 23 18-40 40-66 (95)
4 d2fa8a1 c.47.1.23 (A:4-89) Hyp 14.5 26 0.0019 22.2 0.9 22 44-65 11-32 (86)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 14.5 52 0.0038 17.4 2.1 23 10-32 8-30 (32)
6 d1xiya1 c.47.1.10 (A:2-180) 1- 12.6 27 0.002 24.4 0.6 12 47-58 53-64 (179)
7 d1gtma2 c.58.1.1 (A:3-180) Glu 11.8 45 0.0033 23.5 1.7 48 40-95 64-113 (178)
8 d2ihta2 c.36.1.5 (A:12-197) Ca 10.2 64 0.0046 21.5 2.0 16 50-65 1-16 (186)
9 d1mxra_ a.25.1.2 (A:) Ribonucl 10.1 1.1E+02 0.0079 22.2 3.4 30 54-83 212-241 (339)
10 d1wiga1 g.39.1.3 (A:1-32) Acti 7.8 51 0.0037 17.6 0.5 7 46-52 25-31 (32)
No 1
>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]}
Probab=21.03 E-value=18 Score=22.39 Aligned_cols=16 Identities=19% Similarity=0.521 Sum_probs=12.8
Q ss_pred cCCCcHHHHHHHHHHhC
Q 047567 48 YVPTCSEYSMQAYKKYG 64 (121)
Q Consensus 48 f~PTCSeYa~eAI~k~G 64 (121)
-.|+|| |+..-++||-
T Consensus 71 vvp~c~-y~~~~~~k~p 86 (102)
T d1r57a_ 71 IIASCS-FAKHMLEKED 86 (102)
T ss_dssp EEESSH-HHHHHHHHCG
T ss_pred EEEecH-hHHHHHHhCc
Confidence 568998 8888888874
No 2
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}
Probab=17.02 E-value=26 Score=25.15 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=35.9
Q ss_pred cCCCCCCCCcCCCcHHHHHHHHHHhChhHHHHHHHHHHhhcCCCC--CCcccCCccccc
Q 047567 39 SPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLG--NSVALFSVLKFI 95 (121)
Q Consensus 39 SP~~g~~CRf~PTCSeYa~eAI~k~G~~kG~~Lt~~RIlRCnP~~--~gG~Dyp~~k~~ 95 (121)
-|.+|. |||.|.-|.=-.. ..+.+||.+==+-+-|++ +||++.-|.+..
T Consensus 86 GP~kGG-iR~~~~v~~~ev~-------~La~~MT~K~Al~~lp~GGgKggi~~dP~~~s 136 (194)
T d1bgva2 86 GPYKGG-LRFAPSVNLSIMK-------FLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKS 136 (194)
T ss_dssp SSEEEE-EEECTTCCHHHHH-------HHHHHHHHHHHHTSSSCCEEEEEESCCCTTCC
T ss_pred CCcCCC-eeecCcCCHHHHH-------HHHHHHHHhhhhcCCCcccccceeccCCCCCC
Confidence 344444 9999999873222 256888888888888997 889998776554
No 3
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.51 E-value=48 Score=21.23 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=18.1
Q ss_pred HHHHHHHHHHH----HHHHHHhhhccC
Q 047567 18 FEFLVNSIKSL----KWVLVKTGEISP 40 (121)
Q Consensus 18 f~~~v~~~~~l----~lIr~YQ~~ISP 40 (121)
.+|+-|++.-. .++..||+.++|
T Consensus 40 ~~h~~nAi~Vc~qP~~LL~ilq~tlP~ 66 (95)
T d1om2a_ 40 VDHLTNAIAVCGQPQQLLQVLQQTLPP 66 (95)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCCH
Confidence 46888877643 589999999987
No 4
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=14.54 E-value=26 Score=22.19 Aligned_cols=22 Identities=5% Similarity=0.286 Sum_probs=19.4
Q ss_pred CCCCcCCCcHHHHHHHHHHhCh
Q 047567 44 RSCRYVPTCSEYSMQAYKKYGV 65 (121)
Q Consensus 44 ~~CRf~PTCSeYa~eAI~k~G~ 65 (121)
..|+|.|-.+.+|.|.+.+++=
T Consensus 11 ~~C~w~~Ra~wlaqeLl~tF~~ 32 (86)
T d2fa8a1 11 TQCNWLLRAGWMAQEILQTFAS 32 (86)
T ss_dssp TTTTCHHHHHHHHHHHHHHHGG
T ss_pred CCCCChHHHHHHHHHHHHhCCc
Confidence 4699999999999999998763
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.45 E-value=52 Score=17.39 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047567 10 LSLFILLIFEFLVNSIKSLKWVL 32 (121)
Q Consensus 10 ~~~~~~~~f~~~v~~~~~l~lIr 32 (121)
.++|++|.|.-.|+-+.+++-|+
T Consensus 8 yivfialffgiavgiifaiksik 30 (32)
T d2e74e1 8 YIVFIALFFGIAVGIIFAIKSIK 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhheeeEEEEe
Confidence 46788888887777777765443
No 6
>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=12.55 E-value=27 Score=24.39 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=9.4
Q ss_pred CcCCCcHHHHHH
Q 047567 47 RYVPTCSEYSMQ 58 (121)
Q Consensus 47 Rf~PTCSeYa~e 58 (121)
.|+||||+.-+-
T Consensus 53 AFTp~Cs~~hlp 64 (179)
T d1xiya1 53 AFTPTCSTKMIP 64 (179)
T ss_dssp TTCHHHHHTHHH
T ss_pred ccCCccchhhCc
Confidence 589999987653
No 7
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=11.77 E-value=45 Score=23.47 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=34.1
Q ss_pred CCCCCCCCcCCCcHHHHHHHHHHhChhHHHHHHHHHHhhcCCCC--CCcccCCccccc
Q 047567 40 PLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLG--NSVALFSVLKFI 95 (121)
Q Consensus 40 P~~g~~CRf~PTCSeYa~eAI~k~G~~kG~~Lt~~RIlRCnP~~--~gG~Dyp~~k~~ 95 (121)
|.+| -|||+|+.+.=-.+| .+.+||.+==+-+-|++ +||++.-|.+..
T Consensus 64 P~kG-GiR~~~~v~~~ev~a-------La~~MT~K~Al~~lp~GG~Kggi~~dP~~~s 113 (178)
T d1gtma2 64 PTKG-GIRWHPEETLSTVKA-------LAAWMTWKTAVMDLPYGGGKGGIIVDPKKLS 113 (178)
T ss_dssp SEEC-CEEECTTCCHHHHHH-------HHHHHHHHHHHTTCSCEEEEEEEECCGGGSC
T ss_pred CCCC-CeEECccCCHHHHHH-------HHHHHHHHHHhccCCCCCCceeEecCCCCCC
Confidence 4444 499999999744444 34788888777777884 788888776543
No 8
>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}
Probab=10.18 E-value=64 Score=21.50 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.7
Q ss_pred CCcHHHHHHHHHHhCh
Q 047567 50 PTCSEYSMQAYKKYGV 65 (121)
Q Consensus 50 PTCSeYa~eAI~k~G~ 65 (121)
||-+++-.+.++++|+
T Consensus 1 pT~a~~lv~~L~~~Gv 16 (186)
T d2ihta2 1 PTAAHALLSRLRDHGV 16 (186)
T ss_dssp CCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHCCC
Confidence 7888888888988886
No 9
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]}
Probab=10.08 E-value=1.1e+02 Score=22.15 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=24.9
Q ss_pred HHHHHHHHHhChhHHHHHHHHHHhhcCCCC
Q 047567 54 EYSMQAYKKYGVVKGTVLTAWRLCRCNPLG 83 (121)
Q Consensus 54 eYa~eAI~k~G~~kG~~Lt~~RIlRCnP~~ 83 (121)
=+...+++++|.++|+..+++-|.|---.|
T Consensus 212 F~~~~~l~~~g~m~g~~~~i~~I~RDE~lH 241 (339)
T d1mxra_ 212 FACSFAFAERELMEGNAKIIRLIARDEALH 241 (339)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHhhhHHH
Confidence 445677899999999999999999986554
No 10
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.78 E-value=51 Score=17.58 Aligned_cols=7 Identities=43% Similarity=1.151 Sum_probs=5.2
Q ss_pred CCcCCCc
Q 047567 46 CRYVPTC 52 (121)
Q Consensus 46 CRf~PTC 52 (121)
=.|+|||
T Consensus 25 khYHP~C 31 (32)
T d1wiga1 25 KHYHPSC 31 (32)
T ss_dssp CCBCTTT
T ss_pred cccCCCC
Confidence 3578988
Done!