Query 047568
Match_columns 128
No_of_seqs 112 out of 1482
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 12:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 99.9 3.7E-25 8.1E-30 155.7 12.4 103 25-127 25-128 (489)
2 PLN02687 flavonoid 3'-monooxyg 99.8 9.7E-21 2.1E-25 135.1 10.8 104 23-127 31-134 (517)
3 PLN02971 tryptophan N-hydroxyl 99.8 2.3E-20 5E-25 133.8 11.6 103 23-127 54-160 (543)
4 PLN02394 trans-cinnamate 4-mon 99.8 4.3E-20 9.3E-25 131.3 12.7 107 20-127 24-131 (503)
5 PLN00110 flavonoid 3',5'-hydro 99.8 4.1E-20 8.9E-25 131.5 12.3 106 20-127 25-131 (504)
6 PLN02183 ferulate 5-hydroxylas 99.8 3.4E-20 7.4E-25 132.2 11.9 106 20-127 30-136 (516)
7 PTZ00404 cytochrome P450; Prov 99.8 5.1E-20 1.1E-24 130.4 10.4 103 22-127 25-127 (482)
8 PLN03234 cytochrome P450 83B1; 99.8 1.8E-19 4E-24 128.0 13.1 108 20-127 22-129 (499)
9 PLN03112 cytochrome P450 famil 99.8 2E-19 4.2E-24 128.3 11.3 106 20-127 26-132 (514)
10 PLN02196 abscisic acid 8'-hydr 99.8 1.4E-19 3.1E-24 127.6 9.2 102 23-127 32-133 (463)
11 PLN02655 ent-kaurene oxidase 99.8 5E-19 1.1E-23 124.9 9.9 100 28-127 1-100 (466)
12 PLN02500 cytochrome P450 90B1 99.8 2.3E-19 4.9E-24 127.3 8.0 103 22-127 34-140 (490)
13 PLN02290 cytokinin trans-hydro 99.8 5.8E-19 1.3E-23 125.9 8.9 103 22-128 38-160 (516)
14 PLN00168 Cytochrome P450; Prov 99.8 2E-18 4.2E-23 123.4 11.5 103 23-126 32-137 (519)
15 PLN02987 Cytochrome P450, fami 99.8 9E-19 1.9E-23 123.8 9.0 105 20-127 24-132 (472)
16 PLN02774 brassinosteroid-6-oxi 99.8 6.9E-19 1.5E-23 124.1 8.3 101 23-127 28-128 (463)
17 PLN02966 cytochrome P450 83A1 99.8 4.3E-18 9.4E-23 121.2 10.5 105 22-126 25-129 (502)
18 PLN03018 homomethionine N-hydr 99.8 8.1E-18 1.8E-22 120.5 11.0 104 25-128 39-144 (534)
19 KOG0157 Cytochrome P450 CYP4/C 99.7 2.2E-17 4.9E-22 117.4 8.9 102 24-128 33-137 (497)
20 PLN03141 3-epi-6-deoxocathaste 99.7 1.6E-17 3.5E-22 116.9 6.9 103 22-127 3-109 (452)
21 KOG0158 Cytochrome P450 CYP3/C 99.7 4.8E-17 1E-21 114.4 8.5 115 11-128 16-134 (499)
22 PLN02302 ent-kaurenoic acid ox 99.7 3.9E-16 8.5E-21 110.8 11.2 102 23-128 39-146 (490)
23 PLN02169 fatty acid (omega-1)- 99.7 1.6E-16 3.5E-21 113.2 9.2 105 21-128 26-135 (500)
24 PF00067 p450: Cytochrome P450 99.7 1.7E-17 3.8E-22 115.4 2.2 99 28-127 1-102 (463)
25 PLN03195 fatty acid omega-hydr 99.7 1.8E-15 3.9E-20 108.2 11.0 97 27-128 31-131 (516)
26 PLN02936 epsilon-ring hydroxyl 99.6 6.8E-15 1.5E-19 104.6 7.3 97 29-128 15-115 (489)
27 PLN02738 carotene beta-ring hy 99.5 5.8E-14 1.3E-18 102.5 8.2 89 37-128 142-230 (633)
28 KOG0159 Cytochrome P450 CYP11/ 99.4 6.3E-13 1.4E-17 93.2 6.9 104 23-128 47-158 (519)
29 PLN02648 allene oxide synthase 99.4 2.2E-13 4.7E-18 96.7 2.7 99 25-127 16-133 (480)
30 PLN02426 cytochrome P450, fami 99.2 1.4E-10 3.1E-15 83.0 10.6 89 34-128 49-139 (502)
31 KOG0684 Cytochrome P450 [Secon 99.1 7.7E-10 1.7E-14 76.8 8.1 96 26-124 31-128 (486)
32 COG2124 CypX Cytochrome P450 [ 97.5 0.00023 5E-09 50.2 5.3 77 48-128 24-107 (411)
33 PHA03049 IMV membrane protein; 74.6 9.9 0.00022 19.8 3.6 22 9-30 14-35 (68)
34 PF13625 Helicase_C_3: Helicas 73.4 11 0.00024 22.2 4.3 40 46-87 74-113 (129)
35 KOG0114 Predicted RNA-binding 66.8 23 0.0005 20.6 5.6 57 28-87 14-76 (124)
36 PHA01327 hypothetical protein 58.0 2.6 5.7E-05 19.7 -0.3 17 108-125 11-27 (49)
37 PF10915 DUF2709: Protein of u 50.2 26 0.00057 22.6 3.0 55 34-88 90-147 (238)
38 PF08675 RNA_bind: RNA binding 48.5 39 0.00084 18.7 3.1 40 48-87 21-61 (87)
39 COG1707 ACT domain-containing 46.4 41 0.00089 21.3 3.4 39 44-82 152-195 (218)
40 PF15240 Pro-rich: Proline-ric 44.7 20 0.00043 22.8 1.9 14 1-14 1-14 (179)
41 PF13893 RRM_5: RNA recognitio 44.1 39 0.00085 16.2 4.8 34 53-86 2-39 (56)
42 PF11616 EZH2_WD-Binding: WD r 42.9 12 0.00026 16.1 0.5 8 117-124 19-26 (30)
43 KOG4241 Mitochondrial ribosoma 38.7 30 0.00064 22.6 2.0 29 59-87 136-164 (245)
44 PF15330 SIT: SHP2-interacting 38.3 81 0.0018 18.2 4.0 11 33-43 45-55 (107)
45 PF13331 DUF4093: Domain of un 38.0 61 0.0013 17.9 3.0 15 76-90 7-21 (87)
46 PF02012 BNR: BNR/Asp-box repe 37.2 12 0.00025 12.6 0.0 8 114-121 4-11 (12)
47 KOG0107 Alternative splicing f 36.4 63 0.0014 20.7 3.1 47 36-85 14-64 (195)
48 PRK09458 pspB phage shock prot 34.5 80 0.0017 17.0 3.1 12 11-22 19-30 (75)
49 PLN03134 glycine-rich RNA-bind 34.1 1.1E+02 0.0024 18.5 4.7 49 36-87 38-95 (144)
50 PF09301 DUF1970: Domain of un 31.2 79 0.0017 17.4 2.7 27 7-33 14-40 (117)
51 PLN03120 nucleic acid binding 27.1 2.1E+02 0.0045 19.5 5.7 58 36-96 8-71 (260)
52 PF15269 zf-C2H2_7: Zinc-finge 26.8 59 0.0013 15.6 1.5 18 22-39 5-22 (54)
53 TIGR01661 ELAV_HUD_SF ELAV/HuD 26.5 2.2E+02 0.0048 19.6 6.3 56 35-93 272-337 (352)
54 PF06667 PspB: Phage shock pro 25.9 1.2E+02 0.0026 16.3 3.6 10 12-21 20-29 (75)
55 PF05545 FixQ: Cbb3-type cytoc 25.4 92 0.002 14.8 2.6 7 12-18 24-30 (49)
56 PF12385 Peptidase_C70: Papain 25.2 1.6E+02 0.0034 18.5 3.5 19 48-66 97-115 (166)
57 smart00362 RRM_2 RNA recogniti 24.7 95 0.0021 14.8 5.5 40 48-87 12-58 (72)
58 PF03625 DUF302: Domain of unk 24.7 78 0.0017 15.9 1.9 18 71-88 20-37 (65)
59 COG4471 Uncharacterized protei 24.7 1.4E+02 0.003 16.7 4.6 45 52-96 18-63 (90)
60 TIGR01622 SF-CC1 splicing fact 23.4 2.7E+02 0.0058 20.2 5.0 38 50-87 387-429 (457)
61 TIGR01642 U2AF_lg U2 snRNP aux 23.3 2.6E+02 0.0057 20.6 5.0 45 50-94 434-491 (509)
62 TIGR02976 phageshock_pspB phag 22.4 1.4E+02 0.0031 16.0 3.5 8 12-19 20-27 (75)
63 COG5329 Phosphoinositide polyp 21.9 90 0.002 23.8 2.4 26 45-70 292-317 (570)
64 TIGR00603 rad25 DNA repair hel 21.1 2.9E+02 0.0063 22.1 4.9 42 46-87 91-132 (732)
65 COG2069 CdhD CO dehydrogenase/ 20.8 2.2E+02 0.0048 20.1 3.8 43 45-87 149-197 (403)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=3.7e-25 Score=155.68 Aligned_cols=103 Identities=52% Similarity=0.992 Sum_probs=92.5
Q ss_pred CCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCC-hHHHHH
Q 047568 25 SSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPA-LVATQR 103 (128)
Q Consensus 25 ~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~-~~~~~~ 103 (128)
.+.||||+++|++||++++....+|..+.++.++|||++.+++|..++|+++|+|+++|+|.+++..|.+|+. ......
T Consensus 25 ~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~ 104 (489)
T KOG0156|consen 25 RNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLKY 104 (489)
T ss_pred CCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHHH
Confidence 7889999999999999998444599999999999999999999999999999999999999999999999998 334455
Q ss_pred hhcCCcceEecCCChhhHhhhhhc
Q 047568 104 LTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 104 ~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
+..++.|++++.+|+.||++||+.
T Consensus 105 ~~~~~~~i~~a~yG~~Wr~~Rr~~ 128 (489)
T KOG0156|consen 105 LSYGGKGIVFAPYGDYWREMRRFA 128 (489)
T ss_pred hcCCCCceEeCCCcHHHHHHHHHH
Confidence 555789999998899999999975
No 2
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.85 E-value=9.7e-21 Score=135.05 Aligned_cols=104 Identities=48% Similarity=0.943 Sum_probs=84.1
Q ss_pred CCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHH
Q 047568 23 YASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQ 102 (128)
Q Consensus 23 ~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~ 102 (128)
+..+.||||++.|++|++..+ ..+++..+.++.++||+++++++++.++|+++|||++++++.++...|.+++......
T Consensus 31 ~~~~~pPgp~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~~ 109 (517)
T PLN02687 31 HKRPLPPGPRGWPVLGNLPQL-GPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAE 109 (517)
T ss_pred CCCCCCccCCCCCccccHHhc-CCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccchh
Confidence 334568899999999999877 5678899999999999999999999999999999999999998878898877654433
Q ss_pred HhhcCCcceEecCCChhhHhhhhhc
Q 047568 103 RLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 103 ~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
.+...+.+++++.+|+.|+++|+++
T Consensus 110 ~~~~~~~~~l~~~~g~~Wk~~Rr~l 134 (517)
T PLN02687 110 HMAYNYQDLVFAPYGPRWRALRKIC 134 (517)
T ss_pred hhccCCceeEeCCCCHHHHHHHHHH
Confidence 3322244555554599999999976
No 3
>PLN02971 tryptophan N-hydroxylase
Probab=99.84 E-value=2.3e-20 Score=133.82 Aligned_cols=103 Identities=27% Similarity=0.493 Sum_probs=81.1
Q ss_pred CCCCCCCCCCCCceeccccCCCCCC-chHHHHHHHhhcC-CeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHH
Q 047568 23 YASSLPPGPKGLPFIGNLHQFDASK-PHVSFWELSKKYG-PLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVA 100 (128)
Q Consensus 23 ~~~~~~pgp~~~~~~G~~~~~~~~~-~~~~~~~~~~~~g-~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~ 100 (128)
++...||||+++|++|++..+.... .+..+.++.++|| +++.+++|+.++|+++||++++++|.+++..|.+|+....
T Consensus 54 r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~~ 133 (543)
T PLN02971 54 KLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTYA 133 (543)
T ss_pred CCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcccc
Confidence 4456789999999999998763333 3678899999999 7999999999999999999999999998888988875433
Q ss_pred HHHhhcCC-c-ceEecCCChhhHhhhhhc
Q 047568 101 TQRLTYNG-L-DLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 101 ~~~~~~~~-~-~l~~~~~g~~wk~~R~~l 127 (128)
. ...+.+ . +++..+ |++||++|+++
T Consensus 134 ~-~~l~~~~~~~l~~~~-G~~Wk~~Rk~l 160 (543)
T PLN02971 134 Q-KILSNGYKTCVITPF-GEQFKKMRKVI 160 (543)
T ss_pred h-hhccCCCCceEecCC-cHHHHHHHHHH
Confidence 2 222111 1 355555 99999999986
No 4
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.84 E-value=4.3e-20 Score=131.34 Aligned_cols=107 Identities=33% Similarity=0.528 Sum_probs=84.5
Q ss_pred hccCCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChH
Q 047568 20 TSSYASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALV 99 (128)
Q Consensus 20 ~~~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~ 99 (128)
...++.+.+|||++.|++|++..+.....+..+.+++++||+++++++++.++|+++|||.+++++.++...|.+++...
T Consensus 24 ~~~~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~ 103 (503)
T PLN02394 24 LRGKKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNV 103 (503)
T ss_pred HhcCcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcc
Confidence 34566788999999999999987743445789999999999999999999999999999999999988777787776544
Q ss_pred HHHHhhcCC-cceEecCCChhhHhhhhhc
Q 047568 100 ATQRLTYNG-LDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 100 ~~~~~~~~~-~~l~~~~~g~~wk~~R~~l 127 (128)
....+.+.+ ++++..+ |++|+++||++
T Consensus 104 ~~~~~~g~~~~~l~~~~-g~~w~~~Rk~~ 131 (503)
T PLN02394 104 VFDIFTGKGQDMVFTVY-GDHWRKMRRIM 131 (503)
T ss_pred hHhHhccCCCceeecCC-CHHHHHHHHHH
Confidence 434443223 3355555 99999999975
No 5
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.84 E-value=4.1e-20 Score=131.54 Aligned_cols=106 Identities=30% Similarity=0.581 Sum_probs=85.0
Q ss_pred hccCCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChH
Q 047568 20 TSSYASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALV 99 (128)
Q Consensus 20 ~~~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~ 99 (128)
......+.||||+++|++|++..+ ..+++..+.++.++||+++++++++.++|+++|||++++++.++...|.+++...
T Consensus 25 ~~~~~~~~pPgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~ 103 (504)
T PLN00110 25 LPKPSRKLPPGPRGWPLLGALPLL-GNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNA 103 (504)
T ss_pred hhcccCCCcccCCCCCeeechhhc-CCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCcc
Confidence 344555678999999999998776 4568899999999999999999999999999999999999998888888877543
Q ss_pred HHH-HhhcCCcceEecCCChhhHhhhhhc
Q 047568 100 ATQ-RLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 100 ~~~-~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
... ...+.++++++.+ |++|+++|+++
T Consensus 104 ~~~~~~~~~~~~l~~~~-g~~w~~~Rr~~ 131 (504)
T PLN00110 104 GATHLAYGAQDMVFADY-GPRWKLLRKLS 131 (504)
T ss_pred chhhhccCCCceeeCCC-CHHHHHHHHHH
Confidence 322 2222234566555 99999999986
No 6
>PLN02183 ferulate 5-hydroxylase
Probab=99.84 E-value=3.4e-20 Score=132.24 Aligned_cols=106 Identities=38% Similarity=0.706 Sum_probs=83.8
Q ss_pred hccCCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChH
Q 047568 20 TSSYASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALV 99 (128)
Q Consensus 20 ~~~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~ 99 (128)
+..++.+.+|||+++|++|++..+ ....+..+.+++++||+++++++++.++|+++||+++++|+.++...|.+++...
T Consensus 30 ~~~~~~~~ppgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~ 108 (516)
T PLN02183 30 RLRRRLPYPPGPKGLPIIGNMLMM-DQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANI 108 (516)
T ss_pred hccCCCCCCcCCCCCCeeccHHhc-CCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCccc
Confidence 344455789999999999998776 4456788999999999999999999999999999999999998888888776543
Q ss_pred HHHHhhcC-CcceEecCCChhhHhhhhhc
Q 047568 100 ATQRLTYN-GLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 100 ~~~~~~~~-~~~l~~~~~g~~wk~~R~~l 127 (128)
........ +++++..+ |++|+++|+++
T Consensus 109 ~~~~~~~~~~~~l~~~~-g~~w~~~Rr~~ 136 (516)
T PLN02183 109 AISYLTYDRADMAFAHY-GPFWRQMRKLC 136 (516)
T ss_pred chhccccCCCceEeCCC-ChHHHHHHHHH
Confidence 32223222 35566566 99999999973
No 7
>PTZ00404 cytochrome P450; Provisional
Probab=99.83 E-value=5.1e-20 Score=130.37 Aligned_cols=103 Identities=29% Similarity=0.492 Sum_probs=85.1
Q ss_pred cCCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHH
Q 047568 22 SYASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVAT 101 (128)
Q Consensus 22 ~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~ 101 (128)
+.+...+|||++.|++|++..+ ..+++..+.+++++||+++++++++.++|+++||+++++++.++.+.|.+++.....
T Consensus 25 ~~~~~~~pgp~~~p~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~ 103 (482)
T PTZ00404 25 KIHKNELKGPIPIPILGNLHQL-GNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSI 103 (482)
T ss_pred hccCCCCCCCCCCCeeccHhhh-cccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCccee
Confidence 3456778999999999999887 457899999999999999999999999999999999999998876777766644322
Q ss_pred HHhhcCCcceEecCCChhhHhhhhhc
Q 047568 102 QRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 102 ~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
.... .+.|+++++ |+.|+++|+++
T Consensus 104 ~~~~-~~~~l~~~~-g~~w~~~Rk~~ 127 (482)
T PTZ00404 104 KHGT-FYHGIVTSS-GEYWKRNREIV 127 (482)
T ss_pred eeec-cCCceeccC-hHHHHHHHHHH
Confidence 1111 278888887 99999999986
No 8
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.83 E-value=1.8e-19 Score=128.02 Aligned_cols=108 Identities=47% Similarity=0.880 Sum_probs=85.8
Q ss_pred hccCCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChH
Q 047568 20 TSSYASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALV 99 (128)
Q Consensus 20 ~~~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~ 99 (128)
..+++.+.+|||+++|++|++..+...+++.++.+++++||+++++++++.++|+++|||++++|+.++...|.+++...
T Consensus 22 ~~~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~ 101 (499)
T PLN03234 22 TTKKSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLK 101 (499)
T ss_pred hcCCCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCch
Confidence 44555678999999999999988744478889999999999999999999999999999999999998888888887543
Q ss_pred HHHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 100 ATQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 100 ~~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
........+.++.....++.|+++|+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~w~~~Rr~l 129 (499)
T PLN03234 102 GQQTMSYQGRELGFGQYTAYYREMRKMC 129 (499)
T ss_pred hhhhhccCCCccccCCCcHHHHHHHHHH
Confidence 3222222345554555589999999863
No 9
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.82 E-value=2e-19 Score=128.28 Aligned_cols=106 Identities=35% Similarity=0.600 Sum_probs=83.6
Q ss_pred hccCCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChH
Q 047568 20 TSSYASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALV 99 (128)
Q Consensus 20 ~~~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~ 99 (128)
+..+..+.+|||+++|++|++..+ ..+++..+.+++++||+++++++++.++|+++|||++++|+.++.+.|++++...
T Consensus 26 ~~~~~~~~ppgp~~~pl~G~~~~~-~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~ 104 (514)
T PLN03112 26 SMRKSLRLPPGPPRWPIVGNLLQL-GPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTL 104 (514)
T ss_pred cccCCCCCccCCCCCCeeeeHHhc-CCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCcc
Confidence 334555778999999999999877 5678899999999999999999999999999999999999988888888776542
Q ss_pred HHH-HhhcCCcceEecCCChhhHhhhhhc
Q 047568 100 ATQ-RLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 100 ~~~-~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
... ...+.+.+++..+ |++|+++||++
T Consensus 105 ~~~~~~~g~~~~~~~~~-g~~wk~~Rr~~ 132 (514)
T PLN03112 105 AAVHLAYGCGDVALAPL-GPHWKRMRRIC 132 (514)
T ss_pred cceeeccCCCceEeCCC-CHHHHHHHHHH
Confidence 221 1221234445455 99999999974
No 10
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.81 E-value=1.4e-19 Score=127.63 Aligned_cols=102 Identities=26% Similarity=0.474 Sum_probs=80.5
Q ss_pred CCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHH
Q 047568 23 YASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQ 102 (128)
Q Consensus 23 ~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~ 102 (128)
.+...||||++.|++|++..+..++++.++.+++++||+++++++++.++|+++||+++++++.++.+.|... ......
T Consensus 32 ~~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~-~~~~~~ 110 (463)
T PLN02196 32 TKLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFKPT-FPASKE 110 (463)
T ss_pred CCCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCccccc-CchHHH
Confidence 4455677777899999987654678999999999999999999999999999999999999998877766322 111222
Q ss_pred HhhcCCcceEecCCChhhHhhhhhc
Q 047568 103 RLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 103 ~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
... ++.++++++ |+.|+++|+++
T Consensus 111 ~~~-g~~~l~~~~-g~~w~~~Rk~l 133 (463)
T PLN02196 111 RML-GKQAIFFHQ-GDYHAKLRKLV 133 (463)
T ss_pred HHc-CcccccccC-cHHHHHHHHHH
Confidence 222 335788887 99999999986
No 11
>PLN02655 ent-kaurene oxidase
Probab=99.80 E-value=5e-19 Score=124.93 Aligned_cols=100 Identities=31% Similarity=0.499 Sum_probs=81.7
Q ss_pred CCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHhhcC
Q 047568 28 PPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRLTYN 107 (128)
Q Consensus 28 ~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ 107 (128)
||||+++|++|++.++...+++..+++++++||+++++++++.++|+++||+++++|+.++...|.+++.......+.+.
T Consensus 1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~ 80 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRD 80 (466)
T ss_pred CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcC
Confidence 58999999999998875566899999999999999999999999999999999999999888888877654443333322
Q ss_pred CcceEecCCChhhHhhhhhc
Q 047568 108 GLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 108 ~~~l~~~~~g~~wk~~R~~l 127 (128)
+.+++++++|+.|+++|+.+
T Consensus 81 ~~~~~~~~~g~~wr~~Rr~~ 100 (466)
T PLN02655 81 KSMVATSDYGDFHKMVKRYV 100 (466)
T ss_pred CCceeeCCCcHHHHHHHHHH
Confidence 33466655589999999754
No 12
>PLN02500 cytochrome P450 90B1
Probab=99.80 E-value=2.3e-19 Score=127.34 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=80.3
Q ss_pred cCCCCCCCCCCCCceeccccCCC----CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCC
Q 047568 22 SYASSLPPGPKGLPFIGNLHQFD----ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPA 97 (128)
Q Consensus 22 ~~~~~~~pgp~~~~~~G~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~ 97 (128)
.++.+.||||+++|++||+..+. ...++.++.+++++||++++++++++++|+++|||++++++.+++..|.++..
T Consensus 34 ~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~ 113 (490)
T PLN02500 34 QKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYP 113 (490)
T ss_pred cCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCc
Confidence 34456788999999999975431 24567888999999999999999999999999999999999888777765433
Q ss_pred hHHHHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 98 LVATQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
... .... ++.++++++ |++||++|+++
T Consensus 114 ~~~-~~~~-g~~~~~~~~-g~~wr~~Rk~~ 140 (490)
T PLN02500 114 RSI-GGIL-GKWSMLVLV-GDMHRDMRSIS 140 (490)
T ss_pred hHH-HHHh-CcccccccC-CHHHHHHHHHH
Confidence 322 2233 234788887 99999999976
No 13
>PLN02290 cytokinin trans-hydroxylase
Probab=99.79 E-value=5.8e-19 Score=125.92 Aligned_cols=103 Identities=26% Similarity=0.407 Sum_probs=78.2
Q ss_pred cCCCCCCCCCCCCceeccccCCCC------------------CCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHH
Q 047568 22 SYASSLPPGPKGLPFIGNLHQFDA------------------SKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKE 83 (128)
Q Consensus 22 ~~~~~~~pgp~~~~~~G~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~ 83 (128)
......+|||+++|++||+..+.. ......+.++.++||+++.+++|+.++|+++|||++++
T Consensus 38 ~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~ 117 (516)
T PLN02290 38 IMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKE 117 (516)
T ss_pred HHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHH
Confidence 345667999999999999876521 12334568899999999999999999999999999999
Q ss_pred HHHhcCcccCCCCChHH--HHHhhcCCcceEecCCChhhHhhhhhcC
Q 047568 84 TLKAHDLQFSGRPALVA--TQRLTYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 84 vl~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
++.++. .+.+++.... ..... |+|+++++ |+.||++|++++
T Consensus 118 il~~~~-~~~~r~~~~~~~~~~~~--g~~l~~~~-g~~Wk~~Rk~~~ 160 (516)
T PLN02290 118 LLTKYN-TVTGKSWLQQQGTKHFI--GRGLLMAN-GADWYHQRHIAA 160 (516)
T ss_pred HHhcCC-CCCCCcchhhhHHHHHh--cCCccccC-chHHHHHHhhcc
Confidence 998763 3444543221 22233 67888887 999999999864
No 14
>PLN00168 Cytochrome P450; Provisional
Probab=99.79 E-value=2e-18 Score=123.36 Aligned_cols=103 Identities=28% Similarity=0.568 Sum_probs=79.8
Q ss_pred CCCCCCCCCCCCceeccccCCC--CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHH
Q 047568 23 YASSLPPGPKGLPFIGNLHQFD--ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVA 100 (128)
Q Consensus 23 ~~~~~~pgp~~~~~~G~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~ 100 (128)
+....+|||++.|++|++..+. ..+++..+.+++++||+++++++|+.++|+++|||++++++.++...|.+++....
T Consensus 32 ~~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~~ 111 (519)
T PLN00168 32 KGRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVAS 111 (519)
T ss_pred CCCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcccc
Confidence 3445788999999999987552 24577889999999999999999999999999999999999988888888776433
Q ss_pred HHHhhcCCcceEe-cCCChhhHhhhhh
Q 047568 101 TQRLTYNGLDLVF-SPYGAYWREIRKI 126 (128)
Q Consensus 101 ~~~~~~~~~~l~~-~~~g~~wk~~R~~ 126 (128)
.. +.+.+.+++. ..+|++||++||.
T Consensus 112 ~~-~~~~~~~~~~~~~~G~~Wk~~Rr~ 137 (519)
T PLN00168 112 SR-LLGESDNTITRSSYGPVWRLLRRN 137 (519)
T ss_pred hh-hhccCCCceeCCCCCHHHHHHHHH
Confidence 22 2222334444 2349999999873
No 15
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.78 E-value=9e-19 Score=123.83 Aligned_cols=105 Identities=22% Similarity=0.306 Sum_probs=84.2
Q ss_pred hccCCCCCCCCCCCCceeccccCCC----CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCC
Q 047568 20 TSSYASSLPPGPKGLPFIGNLHQFD----ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGR 95 (128)
Q Consensus 20 ~~~~~~~~~pgp~~~~~~G~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~ 95 (128)
.+..+.+.||||.++|++|++..+. ..+++.++.++.++||+++++++++++.|+++||+++++++.++...|.++
T Consensus 24 ~~~~~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~ 103 (472)
T PLN02987 24 TRYRRMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECS 103 (472)
T ss_pred hccCCCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEec
Confidence 3445556788999999999987652 256888899999999999999999999999999999999999888878665
Q ss_pred CChHHHHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 96 PALVATQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 96 ~~~~~~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
...... .+. ++.|+++++ |+.||++|+++
T Consensus 104 ~~~~~~-~~l-g~~~l~~~~-g~~wr~~R~~~ 132 (472)
T PLN02987 104 YPGSIS-NLL-GKHSLLLMK-GNLHKKMHSLT 132 (472)
T ss_pred CcHHHH-HHh-CcccccccC-cHHHHHHHHHH
Confidence 433332 333 346899887 99999999975
No 16
>PLN02774 brassinosteroid-6-oxidase
Probab=99.78 E-value=6.9e-19 Score=124.15 Aligned_cols=101 Identities=16% Similarity=0.238 Sum_probs=79.8
Q ss_pred CCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHH
Q 047568 23 YASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQ 102 (128)
Q Consensus 23 ~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~ 102 (128)
...+.||||+++|++|++..+ .++++.++.++.++||++++++++++++++++||+++++++.++...|.++......
T Consensus 28 ~r~~~ppgp~~~P~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~- 105 (463)
T PLN02774 28 SKKGLPPGTMGWPLFGETTEF-LKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSML- 105 (463)
T ss_pred CCCCCCCCCCCCCchhhHHHH-HHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHH-
Confidence 334567889899999998776 456778899999999999999999999999999999999998777766443332222
Q ss_pred HhhcCCcceEecCCChhhHhhhhhc
Q 047568 103 RLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 103 ~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
.+. ++.|+++++ |+.|+++|+++
T Consensus 106 ~~l-g~~~~~~~~-g~~w~~~R~~l 128 (463)
T PLN02774 106 DIL-GTCNIAAVH-GSTHRYMRGSL 128 (463)
T ss_pred HHh-CccchhhcC-CHHHHHHHHHH
Confidence 333 335777776 99999999875
No 17
>PLN02966 cytochrome P450 83A1
Probab=99.77 E-value=4.3e-18 Score=121.16 Aligned_cols=105 Identities=41% Similarity=0.736 Sum_probs=81.3
Q ss_pred cCCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHH
Q 047568 22 SYASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVAT 101 (128)
Q Consensus 22 ~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~ 101 (128)
.+..+.||||++.|++|++..+...+++..+.+++++||+++++++++.++|+++||+++++|+.++...|.+++.....
T Consensus 25 ~~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~~ 104 (502)
T PLN02966 25 TKRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGH 104 (502)
T ss_pred cCCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCccc
Confidence 34456789999999999998874557889999999999999999999999999999999999998877778766543322
Q ss_pred HHhhcCCcceEecCCChhhHhhhhh
Q 047568 102 QRLTYNGLDLVFSPYGAYWREIRKI 126 (128)
Q Consensus 102 ~~~~~~~~~l~~~~~g~~wk~~R~~ 126 (128)
.....+..++.+..+|+.|+++|++
T Consensus 105 ~~~~~~~~~~~~~~~g~~w~~~R~~ 129 (502)
T PLN02966 105 EFISYGRRDMALNHYTPYYREIRKM 129 (502)
T ss_pred eeeccCcceeeeCCCCHHHHHHHHH
Confidence 2211122334344449999999997
No 18
>PLN03018 homomethionine N-hydroxylase
Probab=99.76 E-value=8.1e-18 Score=120.53 Aligned_cols=104 Identities=26% Similarity=0.506 Sum_probs=79.6
Q ss_pred CCCCCCCCCCceeccccCCCCCCch-HHHHHHHhhc-CCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHH
Q 047568 25 SSLPPGPKGLPFIGNLHQFDASKPH-VSFWELSKKY-GPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQ 102 (128)
Q Consensus 25 ~~~~pgp~~~~~~G~~~~~~~~~~~-~~~~~~~~~~-g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~ 102 (128)
.+.||||+++|++|+++.+...++. ....+..++| |+++++++|+.++|+++|||+++++|.++...|++|+......
T Consensus 39 ~~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~~ 118 (534)
T PLN03018 39 RQLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIME 118 (534)
T ss_pred CCCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhhh
Confidence 3468999999999999876333332 3456666666 7999999999999999999999999998888898887654443
Q ss_pred HhhcCCcceEecCCChhhHhhhhhcC
Q 047568 103 RLTYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 103 ~~~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
.+..++.+++++++|+.||++|++++
T Consensus 119 ~l~~~~~~i~~~~~G~~Wk~~Rk~l~ 144 (534)
T PLN03018 119 TIGDNYKSMGTSPYGEQFMKMKKVIT 144 (534)
T ss_pred hhccCCCceEecCCCHHHHHHHHHHH
Confidence 33212336777766999999999863
No 19
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.73 E-value=2.2e-17 Score=117.38 Aligned_cols=102 Identities=32% Similarity=0.580 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCceeccccCCCCC--CchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChH-H
Q 047568 24 ASSLPPGPKGLPFIGNLHQFDAS--KPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALV-A 100 (128)
Q Consensus 24 ~~~~~pgp~~~~~~G~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~-~ 100 (128)
....+|||+++|++|++..+... +...+..++..+||++++.|+++.+.|+++|||.+++|+.++...+.+.+... .
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~ 112 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES 112 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence 56678999999999999887444 56678899999999999999999999999999999999976666665555544 5
Q ss_pred HHHhhcCCcceEecCCChhhHhhhhhcC
Q 047568 101 TQRLTYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 101 ~~~~~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
...++ |+|+++++ |+.|+++|++++
T Consensus 113 ~~~~l--G~gll~~~-g~~W~~~Rk~~~ 137 (497)
T KOG0157|consen 113 LKPWL--GDGLLFSD-GEKWHKHRKLLT 137 (497)
T ss_pred HHHHh--cCccccCC-chHHHHHHhhcc
Confidence 55665 78999999 999999999874
No 20
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.72 E-value=1.6e-17 Score=116.90 Aligned_cols=103 Identities=21% Similarity=0.321 Sum_probs=82.3
Q ss_pred cCCCCCCCCCCCCceeccccCCC----CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCC
Q 047568 22 SYASSLPPGPKGLPFIGNLHQFD----ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPA 97 (128)
Q Consensus 22 ~~~~~~~pgp~~~~~~G~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~ 97 (128)
+++.+.||||.++|++|++..+. ..+++.++.++.++||+++++++++.++|+++||++++++|.++...|..+..
T Consensus 3 ~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~ 82 (452)
T PLN03141 3 KKKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYP 82 (452)
T ss_pred CCCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCc
Confidence 34556788999999999987652 24688999999999999999999999999999999999999988877765543
Q ss_pred hHHHHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 98 LVATQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
. ....+. ++.++++++ |+.||++|+++
T Consensus 83 ~-~~~~l~-g~~~~~~~~-g~~wr~~r~~~ 109 (452)
T PLN03141 83 K-SLTELM-GKSSILLIN-GSLQRRVHGLI 109 (452)
T ss_pred h-hHHHHh-CcccccccC-cHHHHHHHHHH
Confidence 2 222333 334688887 99999999875
No 21
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=4.8e-17 Score=114.45 Aligned_cols=115 Identities=30% Similarity=0.512 Sum_probs=84.5
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCceeccccCCCCC-CchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcC
Q 047568 11 LFFVLRRHITSSYASSLPPGPKGLPFIGNLHQFDAS-KPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHD 89 (128)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~pgp~~~~~~G~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~ 89 (128)
++++++++....+..+.+|+|++.|++||+..+... .......+...++|+++.++.+.+|.++|+|||++++|+.++.
T Consensus 16 l~y~~~~~~~~yw~rrGi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F 95 (499)
T KOG0158|consen 16 LLYLWLRWTYSYWRRRGIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDF 95 (499)
T ss_pred HHHHHHHhhhhhhccCCCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhC
Confidence 334444444445566689999999999999876332 1233333333334999999999999999999999999999999
Q ss_pred cccCC--CCChHHHH-HhhcCCcceEecCCChhhHhhhhhcC
Q 047568 90 LQFSG--RPALVATQ-RLTYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 90 ~~~~~--~~~~~~~~-~~~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
++|.+ ++...... +. ...+++.++ |++||+.|..++
T Consensus 96 ~~F~~r~~~~~~d~~~~l--~~~~Lf~~~-g~~WK~lR~~ls 134 (499)
T KOG0158|consen 96 DNFYNRKRPIYGDPEDPL--SALNLFFLR-GERWKRLRTKLS 134 (499)
T ss_pred ccCcCCCCCCcCCCCCcc--cccCchhcc-CchHHHHHHhhc
Confidence 99998 44433333 22 247888888 999999998775
No 22
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.69 E-value=3.9e-16 Score=110.75 Aligned_cols=102 Identities=24% Similarity=0.352 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCCceeccccCCC----CCCchHHHHHHHhhcCC--eEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCC
Q 047568 23 YASSLPPGPKGLPFIGNLHQFD----ASKPHVSFWELSKKYGP--LMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRP 96 (128)
Q Consensus 23 ~~~~~~pgp~~~~~~G~~~~~~----~~~~~~~~~~~~~~~g~--~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~ 96 (128)
...+.+|||+++|++|++..+. ..+++.++.+++++||+ ++++++++.+.|+++|||++++|+.++ +.|.++.
T Consensus 39 ~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~~ 117 (490)
T PLN02302 39 GQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPGW 117 (490)
T ss_pred CCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccCC
Confidence 3446789999999999987652 35788899999999997 789999999999999999999999865 4565444
Q ss_pred ChHHHHHhhcCCcceEecCCChhhHhhhhhcC
Q 047568 97 ALVATQRLTYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
...... .. ++.+++..+ |++|+++|++++
T Consensus 118 ~~~~~~-~~-g~~~~~~~~-g~~w~~~R~~~~ 146 (490)
T PLN02302 118 PESTVE-LI-GRKSFVGIT-GEEHKRLRRLTA 146 (490)
T ss_pred chhHHH-Hh-ccccccccC-cHHHHHHHHHHH
Confidence 332222 22 233455555 999999999863
No 23
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.69 E-value=1.6e-16 Score=113.18 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=77.0
Q ss_pred ccCCCCCCCCCCCCceeccccCCCC--CCchHHHHHHHhhcCCeEE---EEeCCcCeEEEccHHHHHHHHHhcCcccCCC
Q 047568 21 SSYASSLPPGPKGLPFIGNLHQFDA--SKPHVSFWELSKKYGPLMS---LRLGFVPTLIVSSAKMAKETLKAHDLQFSGR 95 (128)
Q Consensus 21 ~~~~~~~~pgp~~~~~~G~~~~~~~--~~~~~~~~~~~~~~g~~~~---~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~ 95 (128)
.+++...+|+|+++|++|++..+.. ...++++.+...+||..+. .++++.++|+++|||++++||.++...|.++
T Consensus 26 ~~~~~~~~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~ 105 (500)
T PLN02169 26 IHKKPHGQPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKG 105 (500)
T ss_pred HHhccCCCCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCc
Confidence 3444557889999999999865522 2233444455555886555 5788999999999999999999887778776
Q ss_pred CChHHHHHhhcCCcceEecCCChhhHhhhhhcC
Q 047568 96 PALVATQRLTYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 96 ~~~~~~~~~~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
+......... |+|+++++ |+.||++||+++
T Consensus 106 ~~~~~~~~~~--g~gl~~~~-g~~Wr~~Rk~l~ 135 (500)
T PLN02169 106 PEFKKIFDVL--GEGILTVD-FELWEDLRKSNH 135 (500)
T ss_pred HHHHHHHHhh--cCcccccC-cHHHHHHHHHHH
Confidence 5433333333 79999998 999999999863
No 24
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.67 E-value=1.7e-17 Score=115.45 Aligned_cols=99 Identities=40% Similarity=0.692 Sum_probs=82.6
Q ss_pred CCCCCCCceeccccCCC-CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHH--h
Q 047568 28 PPGPKGLPFIGNLHQFD-ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQR--L 104 (128)
Q Consensus 28 ~pgp~~~~~~G~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~--~ 104 (128)
||||+++|++|++..+. ..+++..+.+++++||++++++++++++++++||+++++|+.++...++.++....... .
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG 80 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence 68999999999998874 37788999999999999999999999999999999999999888777766544333222 1
Q ss_pred hcCCcceEecCCChhhHhhhhhc
Q 047568 105 TYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 105 ~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
...+.++++.+ |+.|+++|+++
T Consensus 81 ~~~~~~l~~~~-~~~~~~~R~~~ 102 (463)
T PF00067_consen 81 PFGGKGLFFSD-GERWRRQRRLL 102 (463)
T ss_dssp HHTTTSSTTSS-HHHHHHHHHHH
T ss_pred ccccccccccc-ccccccccccc
Confidence 23588899888 89999999975
No 25
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.65 E-value=1.8e-15 Score=108.18 Aligned_cols=97 Identities=18% Similarity=0.250 Sum_probs=73.6
Q ss_pred CCCCCCCCceeccccCCCCCCchHHHHHHHhhc---CCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChH-HHH
Q 047568 27 LPPGPKGLPFIGNLHQFDASKPHVSFWELSKKY---GPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALV-ATQ 102 (128)
Q Consensus 27 ~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~-~~~ 102 (128)
.+|||++.|++|++..+.. .+..+.++.++| |+++.+++++.+.|+++||+++++|+.++...|.++.... ...
T Consensus 31 ~~pgp~~~p~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 108 (516)
T PLN03195 31 NRKGPKSWPIIGAALEQLK--NYDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYME 108 (516)
T ss_pred ccCCCCCCCeecchHHHHh--ccchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHH
Confidence 4789999999999865422 244566777777 7999999999999999999999999987656676543322 222
Q ss_pred HhhcCCcceEecCCChhhHhhhhhcC
Q 047568 103 RLTYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 103 ~~~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
.+. ++|+++.+ |++|+++|++++
T Consensus 109 ~~~--g~~l~~~~-g~~w~~~Rr~l~ 131 (516)
T PLN03195 109 VLL--GDGIFNVD-GELWRKQRKTAS 131 (516)
T ss_pred HHh--cCeeeccC-cHHHHHHHHhcc
Confidence 233 67888876 999999999764
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=99.57 E-value=6.8e-15 Score=104.64 Aligned_cols=97 Identities=19% Similarity=0.324 Sum_probs=78.6
Q ss_pred CCCCCCceeccccCC----CCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHh
Q 047568 29 PGPKGLPFIGNLHQF----DASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRL 104 (128)
Q Consensus 29 pgp~~~~~~G~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~ 104 (128)
-|..++|++|..+.. .....+..+.+++++||+++++++++.++++++|||++++|+.+.+..|.++.........
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~~~ 94 (489)
T PLN02936 15 GDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSEFL 94 (489)
T ss_pred CCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhHHH
Confidence 356789999986543 3577889999999999999999999999999999999999998876778776543332333
Q ss_pred hcCCcceEecCCChhhHhhhhhcC
Q 047568 105 TYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 105 ~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
. +.++++++ |++||++|++++
T Consensus 95 ~--~~~i~~~~-g~~wk~~Rk~l~ 115 (489)
T PLN02936 95 F--GSGFAIAE-GELWTARRRAVV 115 (489)
T ss_pred h--cCccccCC-chHHHHHHHhhc
Confidence 3 67888887 999999999874
No 27
>PLN02738 carotene beta-ring hydroxylase
Probab=99.52 E-value=5.8e-14 Score=102.46 Aligned_cols=89 Identities=25% Similarity=0.371 Sum_probs=70.7
Q ss_pred eccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHhhcCCcceEecCC
Q 047568 37 IGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRLTYNGLDLVFSPY 116 (128)
Q Consensus 37 ~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 116 (128)
.|++..+..++.+..+.+++++|||++++++++.++|+++||+.+++|+.++...|.++......... .+.|+++.+
T Consensus 142 ~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~--~g~~l~~~d- 218 (633)
T PLN02738 142 KGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFV--MGKGLIPAD- 218 (633)
T ss_pred cCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhc--cCCceecCC-
Confidence 35555554677889999999999999999999999999999999999998777777765433332222 367888877
Q ss_pred ChhhHhhhhhcC
Q 047568 117 GAYWREIRKICV 128 (128)
Q Consensus 117 g~~wk~~R~~l~ 128 (128)
|+.||++|+.++
T Consensus 219 ge~wr~rRr~l~ 230 (633)
T PLN02738 219 GEIWRVRRRAIV 230 (633)
T ss_pred cHHHHHHHHhcc
Confidence 999999999874
No 28
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=6.3e-13 Score=93.16 Aligned_cols=104 Identities=29% Similarity=0.434 Sum_probs=83.7
Q ss_pred CCCCCCCCCCCCceecccc---CCCCCCchHHHHHHHhhcCCeEEEE-eCCcCeEEEccHHHHHHHHHhcCcccCCCC-C
Q 047568 23 YASSLPPGPKGLPFIGNLH---QFDASKPHVSFWELSKKYGPLMSLR-LGFVPTLIVSSAKMAKETLKAHDLQFSGRP-A 97 (128)
Q Consensus 23 ~~~~~~pgp~~~~~~G~~~---~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~-~ 97 (128)
++...+|+|++.+++|.+. .....+.|+...+.+++||+|++.. +|+...|.+.||++++.++.+++. ++-|+ .
T Consensus 47 r~~~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~-~P~Rp~~ 125 (519)
T KOG0159|consen 47 RPFEEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGK-YPFRPLL 125 (519)
T ss_pred CChhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCC-CCCcccc
Confidence 3445689999999999987 3334788899999999999999999 788899999999999999988765 56664 2
Q ss_pred ---hHHHHHhhcCCcceEecCCChhhHhhhhhcC
Q 047568 98 ---LVATQRLTYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 98 ---~~~~~~~~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
............|++..+ |++|++.|+.++
T Consensus 126 ~~~w~~~rd~~~~~~Gl~~~~-G~~W~~~Rs~ln 158 (519)
T KOG0159|consen 126 IEPWVAYRDFRGGVCGLFLLE-GPEWQRLRSALN 158 (519)
T ss_pred cchhhhhHHhhccCCCcccCC-CHHHHHHHHHhc
Confidence 223444555678999999 999999998764
No 29
>PLN02648 allene oxide synthase
Probab=99.37 E-value=2.2e-13 Score=96.71 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=74.3
Q ss_pred CCCCCCCCCCceeccccCCC----CCCchHHHHHHHhhcCC-eEEEEeCCcCe-------EEEccHHHHHHHHHh----c
Q 047568 25 SSLPPGPKGLPFIGNLHQFD----ASKPHVSFWELSKKYGP-LMSLRLGFVPT-------LIVSSAKMAKETLKA----H 88 (128)
Q Consensus 25 ~~~~pgp~~~~~~G~~~~~~----~~~~~~~~~~~~~~~g~-~~~~~~~~~~~-------v~v~dp~~~~~vl~~----~ 88 (128)
.+.|||+.++|++|.+.++. ..++..++.+..+|||+ +|++.+++.|. |+++|||+++.+|.+ +
T Consensus 16 ~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~~ 95 (480)
T PLN02648 16 LREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVDK 95 (480)
T ss_pred CCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhccc
Confidence 45578888999999987532 45667999999999998 99999998766 999999999999975 4
Q ss_pred CcccCCCCChHHHHHhhcCCc---ceEecCCChhhHhhhhhc
Q 047568 89 DLQFSGRPALVATQRLTYNGL---DLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~---~l~~~~~g~~wk~~R~~l 127 (128)
...+.+... .... ++ +++ +++..+ |+.|+++|+++
T Consensus 96 ~~~~~~~~~-~~~~-l~-G~~~~~s~~~~~-g~~H~r~Rrll 133 (480)
T PLN02648 96 RDVFTGTYM-PSTA-FT-GGYRVLSYLDPS-EPKHAKLKSFL 133 (480)
T ss_pred cccceeeec-cCcc-cc-CCceeeeecCCC-CchHHHHHHHH
Confidence 443443222 2222 33 334 566566 99999999986
No 30
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.24 E-value=1.4e-10 Score=82.98 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=65.4
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcC-CeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCCh-HHHHHhhcCCcce
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYG-PLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPAL-VATQRLTYNGLDL 111 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~-~~~~~~~~~~~~l 111 (128)
.++.|+.... ..+.++++..+.++++ ..++++.++. |+++|||++++|+.++...|.+.... .....+. |+|+
T Consensus 49 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~--g~gi 123 (502)
T PLN02426 49 AYLTASWAKD-FDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLL--GRGI 123 (502)
T ss_pred CCccHHHHHh-cccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhc--CCce
Confidence 4577887653 3456777777888887 5777765543 89999999999998877778665433 2233333 7899
Q ss_pred EecCCChhhHhhhhhcC
Q 047568 112 VFSPYGAYWREIRKICV 128 (128)
Q Consensus 112 ~~~~~g~~wk~~R~~l~ 128 (128)
++++ |++||++||+++
T Consensus 124 ~~~~-g~~wk~~Rk~l~ 139 (502)
T PLN02426 124 FNVD-GDSWRFQRKMAS 139 (502)
T ss_pred eecC-cHHHHHHHHHhH
Confidence 9988 999999999863
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.08 E-value=7.7e-10 Score=76.76 Aligned_cols=96 Identities=22% Similarity=0.227 Sum_probs=70.5
Q ss_pred CCCCCCCC-CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCC-hHHHHH
Q 047568 26 SLPPGPKG-LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPA-LVATQR 103 (128)
Q Consensus 26 ~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~-~~~~~~ 103 (128)
+.||-..+ .|++|+...+ ++++.+++++..+|||++|.+.++|+.+.++.||+....++.+......-... ......
T Consensus 31 ~~PPli~gwiP~lG~a~~f-gk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~ 109 (486)
T KOG0684|consen 31 KEPPLIKGWIPWLGSALAF-GKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTP 109 (486)
T ss_pred CCCcccccCcchhhHHHHh-ccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhh
Confidence 46666655 7999999998 99999999999999999999999999999999999999999665333321111 123333
Q ss_pred hhcCCcceEecCCChhhHhhh
Q 047568 104 LTYNGLDLVFSPYGAYWREIR 124 (128)
Q Consensus 104 ~~~~~~~l~~~~~g~~wk~~R 124 (128)
.+ |.|+.....+....++-
T Consensus 110 vF--g~~v~~d~~~~~~~e~~ 128 (486)
T KOG0684|consen 110 VF--GKGVVYDVPNHVMMEQK 128 (486)
T ss_pred hc--CCCccccCCCchHHHHH
Confidence 33 76776554455554443
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.52 E-value=0.00023 Score=50.23 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=50.6
Q ss_pred chHHHHHHHhhcCCeEEEEeCCc--CeEEEccHHHHHHHHHhcCcccCCCCChH----HHHHhhcCCcc-eEecCCChhh
Q 047568 48 PHVSFWELSKKYGPLMSLRLGFV--PTLIVSSAKMAKETLKAHDLQFSGRPALV----ATQRLTYNGLD-LVFSPYGAYW 120 (128)
Q Consensus 48 ~~~~~~~~~~~~g~~~~~~~~~~--~~v~v~dp~~~~~vl~~~~~~~~~~~~~~----~~~~~~~~~~~-l~~~~~g~~w 120 (128)
.......+.+.|+.+......+. ..+++++++.+++++.++. .+++..... ...... |.+ +++++ |++|
T Consensus 24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~ll~~d-g~~H 99 (411)
T COG2124 24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVL--GDGSLLTLD-GPEH 99 (411)
T ss_pred hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhc--cccceeecC-CHHH
Confidence 34555667777887777765444 3899999999999997753 122222111 122332 555 77777 9999
Q ss_pred HhhhhhcC
Q 047568 121 REIRKICV 128 (128)
Q Consensus 121 k~~R~~l~ 128 (128)
+++||+++
T Consensus 100 ~r~Rkl~~ 107 (411)
T COG2124 100 TRLRKLLA 107 (411)
T ss_pred HHHHHHhc
Confidence 99999874
No 33
>PHA03049 IMV membrane protein; Provisional
Probab=74.61 E-value=9.9 Score=19.80 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhccCCCCCCCC
Q 047568 9 IFLFFVLRRHITSSYASSLPPG 30 (128)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~pg 30 (128)
++.+.++-.+.+++.....+|.
T Consensus 14 Ii~lIvYgiYnkk~~~q~~~p~ 35 (68)
T PHA03049 14 IIGLIVYGIYNKKTTTSQNPPS 35 (68)
T ss_pred HHHHHHHHHHhcccccCCCCCC
Confidence 3333344445445555555544
No 34
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=73.44 E-value=11 Score=22.21 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=30.7
Q ss_pred CCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHh
Q 047568 46 SKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 46 ~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~ 87 (128)
.+....+++|.++||.+.-. .+..++...|++.++++..+
T Consensus 74 ~~v~~~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 74 QNVEQSIEDWARRYGRVRLY--KGAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHhC
Confidence 44557889999999986442 24678889999999999854
No 35
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=66.76 E-value=23 Score=20.55 Aligned_cols=57 Identities=23% Similarity=0.375 Sum_probs=39.6
Q ss_pred CCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC------cCeEEEccHHHHHHHHHh
Q 047568 28 PPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF------VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 28 ~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~v~v~dp~~~~~vl~~ 87 (128)
+|....+-++-|++ .+-..+.+.+++-+||++.++.+|. ...|+-.|-..++..+.+
T Consensus 14 ppevnriLyirNLp---~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 14 PPEVNRILYIRNLP---FKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred ChhhheeEEEecCC---ccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence 33333344444543 3445577889999999999999874 367888888888887754
No 36
>PHA01327 hypothetical protein
Probab=57.96 E-value=2.6 Score=19.69 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=12.8
Q ss_pred CcceEecCCChhhHhhhh
Q 047568 108 GLDLVFSPYGAYWREIRK 125 (128)
Q Consensus 108 ~~~l~~~~~g~~wk~~R~ 125 (128)
.++++... |++|.+.|.
T Consensus 11 r~~vineh-ge~wqer~d 27 (49)
T PHA01327 11 RNNVINEH-GEEWQERKD 27 (49)
T ss_pred cchHHHhh-HHHHHHHHH
Confidence 56677777 999988763
No 37
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=50.20 E-value=26 Score=22.58 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=36.3
Q ss_pred CceeccccCC-CCCCchHHHHHHHhhcC-CeEEEE-eCCcCeEEEccHHHHHHHHHhc
Q 047568 34 LPFIGNLHQF-DASKPHVSFWELSKKYG-PLMSLR-LGFVPTLIVSSAKMAKETLKAH 88 (128)
Q Consensus 34 ~~~~G~~~~~-~~~~~~~~~~~~~~~~g-~~~~~~-~~~~~~v~v~dp~~~~~vl~~~ 88 (128)
+|+.|-...= ...+|.+.+.+|..+.. +.=+.. +.-+...+--||+.++.....+
T Consensus 90 CPFTGKVF~DNt~~nPQDAIYDWvSkCPeN~ER~~G~rVKRF~VSeDPevIk~Yi~~~ 147 (238)
T PF10915_consen 90 CPFTGKVFGDNTHPNPQDAIYDWVSKCPENTERQGGVRVKRFFVSEDPEVIKEYIVPR 147 (238)
T ss_pred cCCcCccccCCCCCChHHHHHHHHhhCCccchhccCeEEEEEeecCCHHHHHHhccCC
Confidence 5777765421 24788899999998875 222221 2234677889999999987443
No 38
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=48.53 E-value=39 Score=18.72 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=31.3
Q ss_pred chHHHHHHHhhcCCeEEEEeCC-cCeEEEccHHHHHHHHHh
Q 047568 48 PHVSFWELSKKYGPLMSLRLGF-VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 48 ~~~~~~~~~~~~g~~~~~~~~~-~~~v~v~dp~~~~~vl~~ 87 (128)
-..-+.++...+|++.-.|+.- ...|.+.+.+.++.+...
T Consensus 21 K~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 21 KTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp -HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHH
T ss_pred hhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHH
Confidence 3355667777889998889865 489999999999998754
No 39
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=46.40 E-value=41 Score=21.28 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=30.2
Q ss_pred CCCCchHHHHHHHhhcC-CeEEEEeCCc----CeEEEccHHHHH
Q 047568 44 DASKPHVSFWELSKKYG-PLMSLRLGFV----PTLIVSSAKMAK 82 (128)
Q Consensus 44 ~~~~~~~~~~~~~~~~g-~~~~~~~~~~----~~v~v~dp~~~~ 82 (128)
......+...++.+++| ++.++.+++. .-++++||-.+-
T Consensus 152 MGGkIteaVk~lr~~hgI~VISL~M~GSVpdVADlVvtDPvqAG 195 (218)
T COG1707 152 MGGKITEAVKELREEHGIPVISLNMFGSVPDVADLVVTDPVQAG 195 (218)
T ss_pred ccchHHHHHHHHHHhcCCeEEEeccCCCCcchhheeecCchHhh
Confidence 35777788999999999 8989887654 467888886644
No 40
>PF15240 Pro-rich: Proline-rich
Probab=44.71 E-value=20 Score=22.79 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=7.3
Q ss_pred ChHHHHHHHHHHHH
Q 047568 1 MIILLCLPIFLFFV 14 (128)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (128)
||+++|.+.++++.
T Consensus 1 MLlVLLSvALLALS 14 (179)
T PF15240_consen 1 MLLVLLSVALLALS 14 (179)
T ss_pred ChhHHHHHHHHHhh
Confidence 65655555444443
No 41
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=44.06 E-value=39 Score=16.23 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=25.2
Q ss_pred HHHHhhcCCeEEEEeC----CcCeEEEccHHHHHHHHH
Q 047568 53 WELSKKYGPLMSLRLG----FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 53 ~~~~~~~g~~~~~~~~----~~~~v~v~dp~~~~~vl~ 86 (128)
.+..++||++-.+.+. +...|-..+++.++....
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~ 39 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIE 39 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHH
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 5678899998887643 336777889999888875
No 42
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=42.90 E-value=12 Score=16.14 Aligned_cols=8 Identities=25% Similarity=0.970 Sum_probs=4.2
Q ss_pred ChhhHhhh
Q 047568 117 GAYWREIR 124 (128)
Q Consensus 117 g~~wk~~R 124 (128)
.++|+..|
T Consensus 19 N~eWk~lR 26 (30)
T PF11616_consen 19 NEEWKKLR 26 (30)
T ss_dssp HHHHHH--
T ss_pred HHHHHHhc
Confidence 56777766
No 43
>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=38.74 E-value=30 Score=22.64 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.0
Q ss_pred cCCeEEEEeCCcCeEEEccHHHHHHHHHh
Q 047568 59 YGPLMSLRLGFVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 59 ~g~~~~~~~~~~~~v~v~dp~~~~~vl~~ 87 (128)
|..+..++.|+..+++..|++.+++++.-
T Consensus 136 y~~l~plfvgnh~ill~~d~~kik~~lri 164 (245)
T KOG4241|consen 136 YSSLNPLFVGNHAILLAKDISKIKSILRI 164 (245)
T ss_pred hhhhhhheeccceEEEcCChHHHHHHHHH
Confidence 44566677888899999999999999954
No 44
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=38.28 E-value=81 Score=18.22 Aligned_cols=11 Identities=36% Similarity=0.389 Sum_probs=7.5
Q ss_pred CCceeccccCC
Q 047568 33 GLPFIGNLHQF 43 (128)
Q Consensus 33 ~~~~~G~~~~~ 43 (128)
..|+.||+...
T Consensus 45 ~~p~YgNL~~~ 55 (107)
T PF15330_consen 45 DDPCYGNLELQ 55 (107)
T ss_pred CCccccccccc
Confidence 46788887554
No 45
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=38.03 E-value=61 Score=17.91 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=11.6
Q ss_pred ccHHHHHHHHHhcCc
Q 047568 76 SSAKMAKETLKAHDL 90 (128)
Q Consensus 76 ~dp~~~~~vl~~~~~ 90 (128)
.+|+.+++.|.+-..
T Consensus 7 A~~e~I~~AL~~~~~ 21 (87)
T PF13331_consen 7 ASPEAIREALENART 21 (87)
T ss_pred CCHHHHHHHHHHhCc
Confidence 589999999976444
No 46
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=37.18 E-value=12 Score=12.61 Aligned_cols=8 Identities=25% Similarity=0.750 Sum_probs=4.1
Q ss_pred cCCChhhH
Q 047568 114 SPYGAYWR 121 (128)
Q Consensus 114 ~~~g~~wk 121 (128)
.+.|+.|+
T Consensus 4 ~D~G~TW~ 11 (12)
T PF02012_consen 4 TDGGKTWK 11 (12)
T ss_dssp SSTTSS-E
T ss_pred CCCcccCc
Confidence 34577775
No 47
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=36.41 E-value=63 Score=20.66 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=31.8
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEe----CCcCeEEEccHHHHHHHH
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRL----GFVPTLIVSSAKMAKETL 85 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~v~v~dp~~~~~vl 85 (128)
.+|||.. .---.-++..+.+||++..+|+ .+..+|-..||..+.+..
T Consensus 14 YVGnL~~---~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAv 64 (195)
T KOG0107|consen 14 YVGNLGS---RATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAV 64 (195)
T ss_pred EeccCCC---CcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHH
Confidence 5677643 2223456888999999999886 344677777776666554
No 48
>PRK09458 pspB phage shock protein B; Provisional
Probab=34.45 E-value=80 Score=17.02 Aligned_cols=12 Identities=0% Similarity=-0.036 Sum_probs=5.5
Q ss_pred HHHHHHHHhhcc
Q 047568 11 LFFVLRRHITSS 22 (128)
Q Consensus 11 ~~~~~~~~~~~~ 22 (128)
.+|++..|..++
T Consensus 19 PiWL~LHY~sk~ 30 (75)
T PRK09458 19 PIWLWLHYRSKR 30 (75)
T ss_pred HHHHHHhhcccc
Confidence 345555553333
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=34.12 E-value=1.1e+02 Score=18.50 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=35.4
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
+++++.. .-..+.+.++.++||++..+.+. +..+|-..+++.+++.+..
T Consensus 38 fVgnL~~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 38 FIGGLSW---GTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred EEeCCCC---CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4566542 23456788889999998776542 3368888999999999854
No 50
>PF09301 DUF1970: Domain of unknown function (DUF1970); InterPro: IPR015380 This entry is represented by Bacteriophage PRD1, P16; it is a family of uncharacterised viral proteins.; PDB: 1W8X_P.
Probab=31.22 E-value=79 Score=17.41 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCC
Q 047568 7 LPIFLFFVLRRHITSSYASSLPPGPKG 33 (128)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~pgp~~ 33 (128)
++++++|++++.+....-...--||++
T Consensus 14 lvliliwlwfrnrpaaqvasnwegppy 40 (117)
T PF09301_consen 14 LVLILIWLWFRNRPAAQVASNWEGPPY 40 (117)
T ss_dssp HHHHHHHHHHHHTT-S-SS-TT----T
T ss_pred hhhHHHHHHHccChHHHHhhcCCCCCc
Confidence 344555666654333333334445553
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=27.11 E-value=2.1e+02 Score=19.55 Aligned_cols=58 Identities=9% Similarity=0.075 Sum_probs=40.4
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEe------CCcCeEEEccHHHHHHHHHhcCcccCCCC
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRL------GFVPTLIVSSAKMAKETLKAHDLQFSGRP 96 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~v~v~dp~~~~~vl~~~~~~~~~~~ 96 (128)
++||+.. .--.+.+.+.+..||.|..+.+ .+..+|-..|++.++..+..+...+.++.
T Consensus 8 fVgNLs~---~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~ 71 (260)
T PLN03120 8 KVSNVSL---KATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQS 71 (260)
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCce
Confidence 4566532 2344567888899999888876 24478888999999999876655554443
No 52
>PF15269 zf-C2H2_7: Zinc-finger
Probab=26.81 E-value=59 Score=15.57 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=10.5
Q ss_pred cCCCCCCCCCCCCceecc
Q 047568 22 SYASSLPPGPKGLPFIGN 39 (128)
Q Consensus 22 ~~~~~~~pgp~~~~~~G~ 39 (128)
..+...+|.|++-|+--.
T Consensus 5 pkkphyiprp~gkp~~yk 22 (54)
T PF15269_consen 5 PKKPHYIPRPPGKPFKYK 22 (54)
T ss_pred CCCCCcCCCCCCCCccce
Confidence 344456777776665433
No 53
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=26.45 E-value=2.2e+02 Score=19.64 Aligned_cols=56 Identities=13% Similarity=0.254 Sum_probs=37.1
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---------cCeEEEccHHHHHHHHHh-cCcccC
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---------VPTLIVSSAKMAKETLKA-HDLQFS 93 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~v~dp~~~~~vl~~-~~~~~~ 93 (128)
-++||+.. .--.+.+.++..+||++..+.+.. ..+|...+++.+...+.. ++..+.
T Consensus 272 lfV~NL~~---~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~ 337 (352)
T TIGR01661 272 IFVYNLSP---DTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG 337 (352)
T ss_pred EEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45566643 234566888999999988876532 248888898887777643 333343
No 54
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=25.86 E-value=1.2e+02 Score=16.32 Aligned_cols=10 Identities=0% Similarity=0.155 Sum_probs=4.7
Q ss_pred HHHHHHHhhc
Q 047568 12 FFVLRRHITS 21 (128)
Q Consensus 12 ~~~~~~~~~~ 21 (128)
++++..|..+
T Consensus 20 ~WL~lHY~sk 29 (75)
T PF06667_consen 20 IWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHh
Confidence 3455555443
No 55
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=25.35 E-value=92 Score=14.85 Aligned_cols=7 Identities=14% Similarity=-0.111 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 047568 12 FFVLRRH 18 (128)
Q Consensus 12 ~~~~~~~ 18 (128)
..+++.+
T Consensus 24 gi~~w~~ 30 (49)
T PF05545_consen 24 GIVIWAY 30 (49)
T ss_pred HHHHHHH
Confidence 3333333
No 56
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=25.17 E-value=1.6e+02 Score=18.55 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=14.5
Q ss_pred chHHHHHHHhhcCCeEEEE
Q 047568 48 PHVSFWELSKKYGPLMSLR 66 (128)
Q Consensus 48 ~~~~~~~~~~~~g~~~~~~ 66 (128)
..+.+..+.++|||+.--+
T Consensus 97 t~e~~~~LL~~yGPLwv~~ 115 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAW 115 (166)
T ss_pred CHHHHHHHHHHcCCeEEEe
Confidence 4477889999999965543
No 57
>smart00362 RRM_2 RNA recognition motif.
Probab=24.73 E-value=95 Score=14.80 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=28.0
Q ss_pred chHHHHHHHhhcCCeEEEEeC-------CcCeEEEccHHHHHHHHHh
Q 047568 48 PHVSFWELSKKYGPLMSLRLG-------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 48 ~~~~~~~~~~~~g~~~~~~~~-------~~~~v~v~dp~~~~~vl~~ 87 (128)
....+.++.++||++..+.+. +...|-..+++.+++++..
T Consensus 12 ~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 12 TEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 345677788899987666432 2346777899998888754
No 58
>PF03625 DUF302: Domain of unknown function DUF302 ; InterPro: IPR005180 This domain is found in an undescribed set of proteins. It normally occurs uniquely within a sequence, but is found as a tandem repeat (Q9X8B8 from SWISSPROT). It has an interesting phylogenetic distribution with the majority of examples in bacteria and archaea, but it is also found in Drosophila melanogaster (e.g. Q9VA18 from SWISSPROT). The hypothetical protein TT1751 from Thermus thermophilus has a beta-alpha-beta(4)-alpha structural fold [].; PDB: 1Q9U_A 1J3M_B.
Probab=24.72 E-value=78 Score=15.94 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=13.8
Q ss_pred CeEEEccHHHHHHHHHhc
Q 047568 71 PTLIVSSAKMAKETLKAH 88 (128)
Q Consensus 71 ~~v~v~dp~~~~~vl~~~ 88 (128)
.++.+++|....+++..+
T Consensus 20 ~i~~~cnp~~a~~ll~~~ 37 (65)
T PF03625_consen 20 RILEFCNPKIAYQLLKAD 37 (65)
T ss_dssp EEEEEE-HHHHHHHHCC-
T ss_pred EEEEECChHHHHHHHHhh
Confidence 578899999999999653
No 59
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.66 E-value=1.4e+02 Score=16.68 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=31.4
Q ss_pred HHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHh-cCcccCCCC
Q 047568 52 FWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKA-HDLQFSGRP 96 (128)
Q Consensus 52 ~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~-~~~~~~~~~ 96 (128)
..+..++||++.-..--.+-+|.-+|-+.+++++.. ..-.|.++-
T Consensus 18 ~aRqLrkfG~v~Y~Skk~kY~vlYvn~~~ve~~~~kl~~~kfVK~V 63 (90)
T COG4471 18 DARQLRKFGDVHYVSKKSKYVVLYVNEQDVEQIVEKLSRLKFVKKV 63 (90)
T ss_pred hhHHHHhcCCEEEEecceeEEEEEECHHHHHHHHHHHhhceeeeec
Confidence 356667899988887666677777888899988844 223455443
No 60
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=23.38 E-value=2.7e+02 Score=20.21 Aligned_cols=38 Identities=24% Similarity=0.169 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCCeEEEEeC-----CcCeEEEccHHHHHHHHHh
Q 047568 50 VSFWELSKKYGPLMSLRLG-----FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~-----~~~~v~v~dp~~~~~vl~~ 87 (128)
+-+.+.+.+||++..+.+. +.-+|-..+.+.+...+..
T Consensus 387 ~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~ 429 (457)
T TIGR01622 387 DDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQA 429 (457)
T ss_pred HHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHH
Confidence 3466778899998877653 3356667888888777744
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=23.27 E-value=2.6e+02 Score=20.57 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCeEEEEeC------------CcCeEEEccHHHHHHHHHh-cCcccCC
Q 047568 50 VSFWELSKKYGPLMSLRLG------------FVPTLIVSSAKMAKETLKA-HDLQFSG 94 (128)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~------------~~~~v~v~dp~~~~~vl~~-~~~~~~~ 94 (128)
+-+.+.+.+||.|..+.+. |...|...+++.++..+.. ++..|.+
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~g 491 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFND 491 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4567888999998887653 2347888999998888754 3333433
No 62
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=22.44 E-value=1.4e+02 Score=16.01 Aligned_cols=8 Identities=0% Similarity=0.168 Sum_probs=3.6
Q ss_pred HHHHHHHh
Q 047568 12 FFVLRRHI 19 (128)
Q Consensus 12 ~~~~~~~~ 19 (128)
++++..|.
T Consensus 20 ~wl~lHY~ 27 (75)
T TIGR02976 20 LWLILHYR 27 (75)
T ss_pred HHHHHHHH
Confidence 34444443
No 63
>COG5329 Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
Probab=21.95 E-value=90 Score=23.81 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=20.0
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCCc
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGFV 70 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~ 70 (128)
++-....+.++.++||+++-+.+...
T Consensus 292 ~~af~kHF~~L~~~YG~v~vvNLl~t 317 (570)
T COG5329 292 QSAFDKHFDKLREKYGDVYVVNLLKT 317 (570)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcccC
Confidence 34455778999999999988876543
No 64
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.06 E-value=2.9e+02 Score=22.07 Aligned_cols=42 Identities=10% Similarity=-0.051 Sum_probs=32.6
Q ss_pred CCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHh
Q 047568 46 SKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 46 ~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~ 87 (128)
.....+++++.++||.+--+---++-+|-..|++.+++++..
T Consensus 91 ~~i~~~i~~~~~~ygk~klv~~~~~~~~es~~~~~l~~l~~~ 132 (732)
T TIGR00603 91 KGIIEFIRLCTQSYGKVKLVLKHNRYFVESPHPEVLQRLLKD 132 (732)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCCceEEecCCHHHHHHHHhc
Confidence 345578889999999876655455557888999999999954
No 65
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=20.76 E-value=2.2e+02 Score=20.07 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=31.4
Q ss_pred CCCchHHHHHHHhhcC-CeEEEEe-CCcCeEEEccHHH----HHHHHHh
Q 047568 45 ASKPHVSFWELSKKYG-PLMSLRL-GFVPTLIVSSAKM----AKETLKA 87 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g-~~~~~~~-~~~~~v~v~dp~~----~~~vl~~ 87 (128)
..++-++..++.++|| +++.+++ ...|.+-=..++. ++++|+.
T Consensus 149 medP~eWArk~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEdvLqA 197 (403)
T COG2069 149 MEDPGEWARKCVKKFGADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQA 197 (403)
T ss_pred hhCHHHHHHHHHHHhCCceEEEEeecCCccccCCCHHHHHHHHHHHHHh
Confidence 4678899999999999 8999985 4457666555543 5666654
Done!