Query 047568
Match_columns 128
No_of_seqs 112 out of 1482
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 21:49:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tbg_A Cytochrome P450 2D6; mo 99.9 6.6E-22 2.3E-26 137.9 7.6 105 23-127 7-113 (479)
2 3swz_A Steroid 17-alpha-hydrox 99.8 2.7E-21 9.1E-26 135.6 8.1 107 21-127 3-110 (494)
3 3e6i_A CYPIIE1, P450-J, cytoch 99.8 2.7E-20 9.1E-25 129.8 7.5 103 22-127 6-108 (476)
4 3pm0_A Cypib1, cytochrome P450 99.8 2.5E-20 8.5E-25 130.8 7.2 105 21-127 4-108 (507)
5 3nxu_A Cytochrome P450 3A4; al 99.8 2.5E-20 8.5E-25 130.3 2.4 100 24-128 12-112 (485)
6 3qz1_A Steroid 21-hydroxylase; 99.8 5.3E-20 1.8E-24 129.0 3.9 101 21-127 24-124 (496)
7 3s79_A Cytochrome P450 19A1; o 99.8 7.8E-20 2.7E-24 128.3 4.4 104 22-127 41-148 (503)
8 3k9v_A 1,25-dihydroxyvitamin D 99.8 1.1E-19 3.9E-24 126.7 4.8 108 18-127 16-130 (482)
9 2hi4_A Cytochrome P450 1A2; CY 99.8 5.4E-19 1.8E-23 124.1 5.9 103 23-127 13-116 (495)
10 1po5_A Cytochrome P450 2B4; ox 99.8 1.2E-18 4.2E-23 121.8 6.8 101 25-127 9-109 (476)
11 2fdv_A Cytochrome P450 2A6; CY 99.7 2.2E-18 7.4E-23 120.5 7.2 101 25-127 9-109 (476)
12 3ld6_A Lanosterol 14-alpha dem 99.7 8.7E-19 3E-23 122.1 3.3 101 24-127 9-111 (461)
13 3gw9_A Sterol 14alpha-demethyl 99.7 9.7E-19 3.3E-23 121.1 2.5 100 25-127 2-103 (450)
14 3czh_A Cytochrome P450 2R1; vi 99.7 5E-18 1.7E-22 118.9 5.6 104 23-127 9-114 (481)
15 1r9o_A Cytochrome P450 2C9; mo 99.7 2.6E-18 9E-23 120.1 3.4 101 25-127 10-110 (477)
16 3i3k_A Lanosterol 14-alpha dem 99.7 6.6E-18 2.3E-22 117.6 3.9 104 21-127 6-111 (461)
17 3v8d_A Cholesterol 7-alpha-mon 99.6 3.8E-17 1.3E-21 114.5 2.4 104 20-127 7-112 (491)
18 2ij2_A Cytochrome P450 BM3; mo 99.6 3.4E-16 1.2E-20 109.4 7.1 99 26-128 3-104 (470)
19 2ve3_A Putative cytochrome P45 99.6 5.7E-17 1.9E-21 112.6 3.1 103 20-127 6-108 (444)
20 3n9y_A Cholesterol SIDE-chain 99.6 7.9E-17 2.7E-21 112.7 3.6 104 21-127 4-114 (487)
21 2cib_A Cytochrome P450 51; hem 99.6 5.1E-16 1.7E-20 108.1 6.5 97 26-127 4-101 (455)
22 3dbg_A Putative cytochrome P45 99.6 1.9E-16 6.4E-21 110.5 2.4 97 25-127 22-119 (467)
23 2cd8_A Cytochrome P450 monooxy 99.6 2.3E-16 7.8E-21 109.6 1.1 103 22-128 22-128 (436)
24 3dax_A Cytochrome P450 7A1; ch 99.5 7.9E-16 2.7E-20 107.7 1.4 100 23-127 10-112 (491)
25 3b6h_A Prostacyclin synthase; 99.5 4.6E-15 1.6E-19 104.1 2.7 100 21-124 13-114 (498)
26 1n97_A CYP175A1; electron tran 99.5 1.7E-15 6E-20 103.7 0.5 92 30-128 3-95 (389)
27 3b98_A Prostaglandin I2 syntha 99.4 1.3E-14 4.6E-19 101.1 0.9 98 22-124 14-113 (475)
28 1jfb_A Nitric-oxide reductase 99.4 4.7E-13 1.6E-17 91.9 5.7 96 27-128 2-103 (404)
29 1ued_A P450 OXYC, P450 monooxy 99.3 1.2E-12 4.2E-17 90.1 5.0 96 23-128 7-113 (406)
30 3mdm_A Cholesterol 24-hydroxyl 99.3 2.6E-12 8.9E-17 89.2 5.7 82 45-128 9-94 (456)
31 1izo_A P450bsbeta, cytochrome 99.3 6E-13 2E-17 91.7 2.5 91 32-127 6-99 (417)
32 2zbx_A Cytochrome P450-SU1; be 99.3 6.1E-12 2.1E-16 86.7 5.9 98 26-128 5-111 (412)
33 3awm_A Fatty acid alpha-hydrox 99.3 1.8E-12 6E-17 89.3 2.9 92 28-127 4-98 (415)
34 3dsk_A Cytochrome P450 74A, ch 99.3 1.3E-12 4.3E-17 91.7 1.8 104 21-127 23-144 (495)
35 1s1f_A Putative cytochrome P45 99.2 1.1E-11 3.9E-16 85.2 4.6 95 25-127 7-108 (406)
36 3oo3_A OXY protein; cytochrome 99.2 1E-11 3.5E-16 84.7 4.1 80 45-127 11-94 (384)
37 2jjn_A Cytochrome P450 113A1; 99.2 1.2E-11 4.1E-16 85.2 3.6 91 19-127 12-102 (411)
38 2zwu_A Camphor 5-monooxygenase 99.2 3.7E-11 1.3E-15 83.0 5.8 101 21-127 6-116 (415)
39 3ivy_A Cytochrome P450 CYP125; 99.1 2.9E-11 1E-15 83.9 4.6 98 27-128 19-132 (433)
40 3ejb_B Biotin biosynthesis cyt 99.1 5.6E-11 1.9E-15 81.6 5.8 78 45-127 12-95 (404)
41 3abb_A CYP105D6, cytochrome P4 99.1 3.2E-11 1.1E-15 83.0 4.3 80 45-128 23-110 (408)
42 4fb2_A P450CIN; heme, monooxyg 99.1 3.3E-11 1.1E-15 82.7 3.4 80 45-127 18-99 (398)
43 1z8o_A 6-deoxyerythronolide B 99.1 8.5E-11 2.9E-15 80.8 5.2 79 45-127 13-105 (404)
44 3a4g_A Vitamin D hydroxylase; 99.1 5.3E-11 1.8E-15 82.1 3.9 79 45-127 19-102 (411)
45 2y5n_A MYCG, P-450-like protei 99.1 7.1E-11 2.4E-15 81.7 3.1 78 45-127 36-118 (417)
46 3aba_A Cytochrome P450; oxidor 99.1 1.2E-10 4.1E-15 80.1 4.2 78 45-127 18-102 (403)
47 1cpt_A Cytochrome P450-TERP; o 99.0 6.6E-11 2.3E-15 81.9 2.8 89 36-127 11-117 (428)
48 3lxh_A Cytochrome P450; heme, 99.0 5.3E-10 1.8E-14 77.3 5.9 80 45-127 37-117 (421)
49 1odo_A Putative cytochrome P45 99.0 3E-10 1E-14 78.2 3.8 80 45-128 14-103 (408)
50 3tyw_A Putative cytochrome P45 99.0 3.2E-10 1.1E-14 78.3 3.5 80 45-128 28-115 (417)
51 2xbk_A PIMD protein; epoxidati 99.0 2.9E-10 1E-14 78.3 3.3 79 45-128 25-113 (404)
52 2z36_A MOXA, cytochrome P450 t 99.0 3.4E-10 1.2E-14 78.1 3.6 79 45-127 21-110 (413)
53 3oft_A Cytochrome P450, CYP101 98.9 2.5E-10 8.5E-15 78.2 2.5 79 45-127 23-101 (396)
54 3dan_A Cytochrome P450 74A2; A 98.9 2E-10 6.8E-15 80.0 1.7 104 21-127 4-126 (473)
55 2z3t_A Cytochrome P450; monoxy 98.9 1.1E-09 3.8E-14 75.8 5.2 76 46-127 20-113 (425)
56 2wm5_A CYP124, putative cytoch 98.9 3.1E-10 1.1E-14 78.8 2.4 79 46-127 44-132 (435)
57 1gwi_A CYP154C1, cytochrome P4 98.9 1.3E-09 4.4E-14 75.2 5.1 80 45-128 16-108 (411)
58 2dkk_A Cytochrome P450; CYP158 98.9 6E-10 2.1E-14 76.9 3.3 80 45-128 26-112 (411)
59 2uuq_A CYP130, cytochrome P450 98.9 1.1E-09 3.7E-14 75.6 3.0 78 45-127 24-111 (414)
60 3r9b_A Cytochrome P450 164A2; 98.9 2.5E-09 8.7E-14 73.7 4.8 77 45-127 28-112 (418)
61 1q5d_A P450 epoxidase; cytochr 98.8 9E-10 3.1E-14 76.1 2.5 78 45-128 25-111 (419)
62 2xkr_A CYP142, putative cytoch 98.8 1.3E-09 4.5E-14 74.7 2.7 75 45-128 17-91 (398)
63 3nc3_A Cytochrome P450 CYPX; c 98.8 2E-09 6.7E-14 74.9 2.6 76 46-127 53-128 (441)
64 3mgx_A Putative P450 monooxyge 98.8 2.4E-09 8.1E-14 74.0 2.8 80 46-128 37-122 (415)
65 3tkt_A Cytochrome P450; aromat 98.8 1.4E-09 4.6E-14 75.9 1.6 77 48-127 47-139 (450)
66 3buj_A CALO2; heme, iron, meta 98.7 5.5E-09 1.9E-13 71.6 3.4 76 46-128 13-95 (397)
67 1lfk_A OXYB, P450 monooxygenas 98.7 6.3E-09 2.2E-13 71.4 2.7 76 49-128 16-104 (398)
68 3b4x_A 367AA long hypothetical 98.7 9.5E-09 3.2E-13 69.9 3.4 72 49-128 2-84 (367)
69 1io7_A Cytochrome P450 CYP119; 98.7 1.9E-08 6.3E-13 68.4 4.7 73 49-128 2-84 (368)
70 1n40_A P450 MT2, cytochrome P4 98.6 7.4E-09 2.5E-13 71.0 -0.0 76 45-127 15-98 (396)
71 3rwl_A Cytochrome P450 alkane 98.5 1.4E-07 4.8E-12 65.4 5.1 80 46-128 38-127 (426)
72 2rfb_A Cytochrome P450; heme, 98.5 3.2E-08 1.1E-12 66.6 1.4 61 57-127 2-62 (343)
73 3p3o_A Cytochrome P450; monoox 98.3 8.8E-08 3E-12 66.1 0.9 76 45-128 32-116 (416)
74 2wiy_A XPLA-heme, cytochrome P 98.1 8.4E-07 2.9E-11 60.8 1.6 75 46-127 20-94 (394)
75 4dnj_A Putative cytochrome P45 97.9 9.2E-06 3.2E-10 56.0 4.4 78 45-127 33-114 (412)
76 4dxy_A Cytochrome P450, CYP101 97.2 0.00026 9E-09 49.0 3.7 81 45-128 36-117 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 95.2 0.0034 1.2E-07 43.0 0.1 76 33-120 42-131 (381)
78 1s79_A Lupus LA protein; RRM, 77.4 6.7 0.00023 21.2 6.3 58 34-94 13-78 (103)
79 2diu_A KIAA0430 protein; struc 75.0 7.3 0.00025 21.2 4.3 52 35-87 12-65 (96)
80 2krb_A Eukaryotic translation 69.8 9 0.00031 19.3 6.9 51 36-87 5-66 (81)
81 1whv_A Poly(A)-specific ribonu 68.9 9.7 0.00033 20.9 3.9 46 42-87 22-68 (100)
82 3ctr_A Poly(A)-specific ribonu 68.1 5 0.00017 22.1 2.7 55 43-97 13-70 (101)
83 1iqt_A AUF1, heterogeneous nuc 66.7 8.9 0.0003 18.9 3.5 42 48-89 12-62 (75)
84 3d2w_A TAR DNA-binding protein 65.3 13 0.00043 19.4 5.3 50 32-84 11-64 (89)
85 3lqv_A PRE-mRNA branch site pr 63.1 16 0.00055 19.8 7.7 62 29-93 5-73 (115)
86 2mss_A Protein (musashi1); RNA 58.5 15 0.00052 18.0 3.8 45 48-92 12-65 (75)
87 2nlw_A Eukaryotic translation 56.4 21 0.00072 19.0 6.7 53 34-87 17-80 (105)
88 3s6e_A RNA-binding protein 39; 54.8 25 0.00086 19.4 4.4 68 29-96 4-84 (114)
89 3s8s_A Histone-lysine N-methyl 53.0 26 0.00089 19.0 5.3 51 34-87 8-67 (110)
90 1sjq_A Polypyrimidine tract-bi 51.7 28 0.00096 19.0 6.0 52 32-86 16-70 (105)
91 1nu4_A U1A RNA binding domain; 51.2 24 0.00083 18.2 5.3 54 34-87 10-70 (97)
92 3beg_B Splicing factor, argini 50.7 29 0.00099 18.9 7.2 51 34-87 18-70 (115)
93 3s7r_A Heterogeneous nuclear r 49.3 23 0.00077 17.9 3.3 52 34-88 13-73 (87)
94 2voo_A Lupus LA protein; RNA-b 48.8 37 0.0013 20.6 4.6 50 36-88 113-170 (193)
95 2cpi_A CCR4-NOT transcription 47.9 9.8 0.00034 20.7 1.7 51 34-87 17-82 (111)
96 2jwn_A Embryonic polyadenylate 45.6 36 0.0012 18.6 4.0 48 36-86 40-96 (124)
97 2do4_A Squamous cell carcinoma 45.5 32 0.0011 17.9 4.2 51 34-87 19-77 (100)
98 3zzy_A Polypyrimidine tract-bi 45.4 41 0.0014 19.2 4.2 48 36-86 32-84 (130)
99 1x5p_A Negative elongation fac 44.7 33 0.0011 17.8 4.7 49 34-87 17-68 (97)
100 2ad9_A Polypyrimidine tract-bi 44.5 41 0.0014 18.8 5.6 51 33-86 32-85 (119)
101 1x4d_A Matrin 3; structural ge 43.9 38 0.0013 18.3 5.8 54 31-86 14-70 (102)
102 1x4e_A RNA binding motif, sing 43.4 31 0.0011 17.2 4.6 50 34-86 7-65 (85)
103 2cq4_A RNA binding motif prote 42.9 39 0.0013 18.1 3.8 51 36-89 29-88 (114)
104 2d9o_A DNAJ (HSP40) homolog, s 42.9 39 0.0013 18.1 5.5 39 49-87 31-73 (100)
105 3pgw_S U1-70K; protein-RNA com 42.6 82 0.0028 22.0 6.0 51 34-87 104-163 (437)
106 2cqc_A Arginine/serine-rich sp 42.5 35 0.0012 17.5 6.3 53 32-87 15-76 (95)
107 2dnz_A Probable RNA-binding pr 41.7 36 0.0012 17.4 6.9 51 34-87 7-66 (95)
108 3v4m_A Splicing factor U2AF 65 41.7 41 0.0014 18.1 5.2 46 50-95 30-87 (105)
109 3ex7_B RNA-binding protein 8A; 41.6 43 0.0015 18.3 5.2 58 34-94 24-91 (126)
110 1sjr_A Polypyrimidine tract-bi 40.9 57 0.0019 19.5 5.0 49 36-87 50-103 (164)
111 4f25_A Polyadenylate-binding p 39.8 45 0.0016 18.0 5.3 50 35-87 8-64 (115)
112 1x4c_A Splicing factor, argini 39.7 44 0.0015 17.8 6.6 51 34-87 17-69 (108)
113 2dnm_A SRP46 splicing factor; 39.2 42 0.0015 17.5 4.4 51 34-87 15-74 (103)
114 2dh8_A DAZ-associated protein 38.9 37 0.0013 17.9 3.2 52 34-88 18-78 (105)
115 2dgx_A KIAA0430 protein; RRM d 37.8 44 0.0015 17.3 5.5 54 34-87 11-71 (96)
116 2cjk_A Nuclear polyadenylated 37.6 57 0.0019 18.5 4.2 50 36-88 91-149 (167)
117 1why_A Hypothetical protein ri 37.3 45 0.0015 17.2 7.0 52 33-87 18-72 (97)
118 2bz2_A Negative elongation fac 37.2 53 0.0018 18.1 3.8 48 35-87 42-92 (121)
119 1p27_B RNA-binding protein 8A; 36.8 47 0.0016 17.4 5.5 50 35-87 26-84 (106)
120 2x1f_A MRNA 3'-END-processing 36.7 46 0.0016 17.1 5.9 50 35-87 5-63 (96)
121 2dgu_A Heterogeneous nuclear r 36.3 49 0.0017 17.3 5.5 51 34-87 13-64 (103)
122 2dnh_A Bruno-like 5, RNA bindi 36.0 49 0.0017 17.3 6.0 52 33-87 16-75 (105)
123 1x4f_A Matrin 3; structural ge 35.8 57 0.0019 18.0 3.8 52 33-86 26-80 (112)
124 2hvz_A Splicing factor, argini 35.5 49 0.0017 17.2 4.3 49 36-87 4-56 (101)
125 4fxv_A ELAV-like protein 1; RN 34.9 52 0.0018 17.3 5.3 50 35-87 22-80 (99)
126 2dhx_A Poly (ADP-ribose) polym 34.6 60 0.0021 17.9 4.4 45 50-94 23-73 (104)
127 2zdj_A Hypothetical protein TT 34.6 45 0.0015 16.5 2.6 20 69-88 11-30 (69)
128 2ywk_A Putative RNA-binding pr 34.1 50 0.0017 16.8 4.1 50 34-86 18-75 (95)
129 2pe8_A Splicing factor 45; RRM 33.9 58 0.002 17.5 4.8 65 31-95 7-84 (105)
130 2dgt_A RNA-binding protein 30; 33.8 50 0.0017 16.8 4.9 51 34-87 12-63 (92)
131 2cpf_A RNA binding motif prote 33.7 52 0.0018 16.9 5.9 51 34-87 7-69 (98)
132 1x4b_A Heterogeneous nuclear r 33.7 41 0.0014 18.1 2.8 50 35-87 30-88 (116)
133 2xnq_A Nuclear polyadenylated 33.6 54 0.0018 17.1 6.7 52 34-87 24-76 (97)
134 1rk8_A CG8781-PA, CG8781-PA pr 33.5 72 0.0025 18.5 5.5 50 35-87 75-133 (165)
135 2wbr_A GW182, gawky, LD47780P; 33.5 57 0.002 17.3 5.0 50 34-86 9-61 (89)
136 3ns6_A Eukaryotic translation 33.5 55 0.0019 17.1 5.2 53 34-86 8-72 (100)
137 2cqb_A Peptidyl-prolyl CIS-tra 33.3 54 0.0019 17.0 5.0 53 32-87 12-73 (102)
138 1w8x_P Protein P16, protein S, 33.2 57 0.0019 17.2 3.6 27 7-33 14-40 (117)
139 2cqd_A RNA-binding region cont 33.0 60 0.002 17.4 4.9 51 34-87 19-78 (116)
140 2fy1_A RNA-binding motif prote 33.0 62 0.0021 17.6 3.8 51 34-87 9-67 (116)
141 2a3j_A U1 small nuclear ribonu 32.8 68 0.0023 18.0 5.5 54 34-87 31-91 (127)
142 2cqi_A Nucleolysin TIAR; RNA r 32.7 56 0.0019 17.0 5.0 50 34-86 17-73 (103)
143 2d9p_A Polyadenylate-binding p 32.7 56 0.0019 17.0 5.7 53 32-87 15-74 (103)
144 3ucg_A Polyadenylate-binding p 32.6 51 0.0017 16.5 4.1 48 36-86 10-66 (89)
145 1x5s_A Cold-inducible RNA-bind 31.9 58 0.002 16.9 5.4 52 33-87 13-73 (102)
146 1wf0_A TDP-43, TAR DNA-binding 31.9 51 0.0018 16.6 2.9 47 35-84 8-58 (88)
147 2dit_A HIV TAT specific factor 31.8 63 0.0022 17.3 3.5 60 28-87 11-83 (112)
148 4f02_A Polyadenylate-binding p 31.5 88 0.003 18.9 5.3 52 33-87 16-76 (213)
149 1oo0_B CG8781-PA, drosophila Y 31.5 62 0.0021 17.1 5.4 50 35-87 29-87 (110)
150 2dgs_A DAZ-associated protein 31.0 59 0.002 16.8 7.7 56 34-92 12-76 (99)
151 2jvr_A Nucleolar protein 3; RN 30.7 69 0.0024 17.5 5.4 51 34-87 30-86 (111)
152 3ulh_A THO complex subunit 4; 30.6 63 0.0021 16.9 4.4 51 34-87 31-89 (107)
153 2div_A TRNA selenocysteine ass 30.6 60 0.0021 16.7 5.4 53 32-87 9-71 (99)
154 3mdf_A Peptidyl-prolyl CIS-tra 30.5 55 0.0019 16.2 6.6 51 34-87 9-68 (85)
155 2e5h_A Zinc finger CCHC-type a 30.3 59 0.002 16.5 6.9 52 33-87 17-77 (94)
156 1whw_A Hypothetical protein ri 30.3 61 0.0021 16.7 5.6 51 34-87 10-69 (99)
157 2err_A Ataxin-2-binding protei 30.0 48 0.0017 17.7 2.7 50 35-87 32-88 (109)
158 1whx_A Hypothetical protein ri 30.0 69 0.0023 17.2 5.2 58 35-95 13-74 (111)
159 2l82_A Designed protein OR32; 29.7 52 0.0018 18.3 2.7 16 72-87 6-21 (162)
160 2dnr_A Synaptojanin-1; RRM dom 29.7 69 0.0024 17.1 4.6 41 48-88 28-69 (91)
161 1wg5_A Heterogeneous nuclear r 29.6 67 0.0023 16.9 4.6 58 34-94 17-83 (104)
162 2cq3_A RNA-binding protein 9; 29.5 65 0.0022 16.7 6.9 51 34-87 17-74 (103)
163 2dhg_A TRNA selenocysteine ass 29.5 65 0.0022 16.7 6.8 54 31-87 8-70 (104)
164 1uaw_A Mouse-musashi-1; RNP-ty 29.2 55 0.0019 15.8 2.8 50 36-88 4-62 (77)
165 2dnq_A RNA-binding protein 4B; 29.0 62 0.0021 16.3 5.4 51 34-87 10-61 (90)
166 2dgv_A HnRNP M, heterogeneous 29.0 62 0.0021 16.3 5.8 51 34-87 10-67 (92)
167 2khc_A Testis-specific RNP-typ 28.9 72 0.0025 17.1 3.5 49 36-87 44-101 (118)
168 2cq1_A PTB-like protein L; RRM 28.7 72 0.0025 17.0 5.6 50 34-86 17-69 (101)
169 1l3k_A Heterogeneous nuclear r 28.4 93 0.0032 18.2 4.5 54 34-90 15-77 (196)
170 2cpj_A Non-POU domain-containi 28.1 68 0.0023 16.5 4.1 51 34-87 17-70 (99)
171 1u6f_A Tcubp1, RNA-binding pro 27.7 84 0.0029 17.4 4.5 50 35-87 45-103 (139)
172 3n9u_C Cleavage and polyadenyl 27.7 94 0.0032 18.0 5.4 49 36-87 59-118 (156)
173 2ghp_A U4/U6 snRNA-associated 27.6 1.1E+02 0.0036 19.5 4.4 56 34-92 43-105 (292)
174 3md1_A Nuclear and cytoplasmic 27.6 62 0.0021 15.9 4.2 40 48-87 14-62 (83)
175 2kvi_A Nuclear polyadenylated 27.5 70 0.0024 16.4 5.6 52 34-87 12-64 (96)
176 2dnp_A RNA-binding protein 14; 27.5 67 0.0023 16.2 7.7 53 32-87 9-62 (90)
177 2kxn_B Transformer-2 protein h 27.3 86 0.0029 17.4 8.7 52 33-87 47-107 (129)
178 2do0_A HnRNP M, heterogeneous 27.0 77 0.0026 16.8 4.2 51 34-87 17-75 (114)
179 3p5t_L Cleavage and polyadenyl 26.6 70 0.0024 16.2 4.0 48 36-86 5-63 (90)
180 3r27_A HnRNP L, heterogeneous 26.5 83 0.0028 16.9 6.3 54 31-87 20-76 (100)
181 2dis_A Unnamed protein product 26.4 77 0.0026 16.6 5.9 51 34-87 10-71 (109)
182 3tyt_A Heterogeneous nuclear r 26.4 1.1E+02 0.0039 18.5 5.3 51 34-86 6-60 (205)
183 2cq2_A Hypothetical protein LO 26.3 89 0.0031 17.3 5.3 51 34-87 27-82 (114)
184 3md3_A Nuclear and cytoplasmic 26.3 92 0.0032 17.4 4.6 48 36-86 4-59 (166)
185 2e5i_A Heterogeneous nuclear r 26.2 93 0.0032 17.4 4.7 47 37-86 30-80 (124)
186 1wex_A Hypothetical protein (r 26.0 83 0.0028 16.8 6.6 51 33-86 16-69 (104)
187 2adc_A Polypyrimidine tract-bi 26.0 1.2E+02 0.004 18.6 6.4 50 35-86 37-90 (229)
188 1x5u_A Splicing factor 3B subu 25.2 80 0.0028 16.4 7.9 51 34-87 17-76 (105)
189 2cq0_A Eukaryotic translation 25.0 81 0.0028 16.4 3.1 51 34-87 17-76 (103)
190 2qfj_A FBP-interacting repress 24.8 1.2E+02 0.004 18.1 6.5 48 36-86 32-88 (216)
191 1p1t_A Cleavage stimulation fa 24.8 81 0.0028 16.3 4.0 51 34-87 10-69 (104)
192 2plx_B Peptide inhibitor; heli 24.7 41 0.0014 12.9 1.8 12 76-87 12-23 (26)
193 1x5t_A Splicing factor 3B subu 24.6 79 0.0027 16.1 4.2 51 34-87 7-67 (96)
194 2dgp_A Bruno-like 4, RNA bindi 23.8 87 0.003 16.3 4.7 51 34-87 15-74 (106)
195 1x4g_A Nucleolysin TIAR; struc 23.6 91 0.0031 16.4 5.4 51 34-87 27-80 (109)
196 2rs2_A Musashi-1, RNA-binding 23.5 93 0.0032 16.5 6.4 52 34-88 27-87 (109)
197 4a8x_A RNA-binding protein wit 23.3 79 0.0027 15.6 5.2 49 36-87 8-66 (88)
198 1wi8_A EIF-4B, eukaryotic tran 23.2 90 0.0031 16.2 5.9 50 33-86 16-75 (104)
199 2jrs_A RNA-binding protein 39; 22.8 97 0.0033 16.5 6.5 50 34-86 28-86 (108)
200 1x4h_A RNA-binding protein 28; 22.6 95 0.0032 16.3 7.6 52 33-87 16-76 (111)
201 3ue2_A Poly(U)-binding-splicin 22.6 1.1E+02 0.0037 16.9 4.4 65 32-96 20-100 (118)
202 1h2v_Z 20 kDa nuclear CAP bind 22.5 1.2E+02 0.004 17.3 4.6 51 34-87 41-100 (156)
203 2jvo_A Nucleolar protein 3; nu 22.4 99 0.0034 16.4 4.2 50 35-87 34-84 (108)
204 1wf1_A RNA-binding protein RAL 22.1 99 0.0034 16.3 5.2 51 34-87 29-81 (110)
205 3nmr_A Cugbp ELAV-like family 21.5 1.2E+02 0.0042 17.1 4.7 50 35-87 98-155 (175)
206 1qm9_A Polypyrimidine tract-bi 21.4 1.3E+02 0.0046 17.6 5.0 49 36-86 7-59 (198)
207 1jmt_A Splicing factor U2AF 35 20.9 1.1E+02 0.0037 16.3 5.1 43 52-94 43-95 (104)
208 2xs2_A Deleted in azoospermia- 20.3 47 0.0016 17.3 1.4 49 35-86 12-68 (102)
No 1
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.86 E-value=6.6e-22 Score=137.91 Aligned_cols=105 Identities=30% Similarity=0.601 Sum_probs=87.2
Q ss_pred CCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHH
Q 047568 23 YASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQ 102 (128)
Q Consensus 23 ~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~ 102 (128)
++.+.||||+++|++||+.++...+.+..+.+++++||+++++++|+.++|+++||+++++||.+++..|.+|+......
T Consensus 7 s~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~~ 86 (479)
T 3tbg_A 7 SKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQ 86 (479)
T ss_dssp --CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGGG
T ss_pred CCCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHHH
Confidence 34468899999999999998867888999999999999999999999999999999999999998888898887655444
Q ss_pred Hhhc--CCcceEecCCChhhHhhhhhc
Q 047568 103 RLTY--NGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 103 ~~~~--~~~~l~~~~~g~~wk~~R~~l 127 (128)
.... .+.+++++.+|+.|+++|+++
T Consensus 87 ~~~~~~~~~~~~~~~~g~~w~~~R~~~ 113 (479)
T 3tbg_A 87 ILGFGPRSQGVFLARYGPAWREQRRFS 113 (479)
T ss_dssp GGTCBTTBCCSTTCCSSHHHHHHHHHH
T ss_pred HhccCCCCCceeeCCCCHHHHHHHHHH
Confidence 3321 245666666699999999875
No 2
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.85 E-value=2.7e-21 Score=135.64 Aligned_cols=107 Identities=32% Similarity=0.573 Sum_probs=84.5
Q ss_pred ccCCCCCCCCCCCCceeccccCCCC-CCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChH
Q 047568 21 SSYASSLPPGPKGLPFIGNLHQFDA-SKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALV 99 (128)
Q Consensus 21 ~~~~~~~~pgp~~~~~~G~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~ 99 (128)
+++..+.||||+++|++||+..+.. .+++..+.+|.++||+++++++|+.++|+++||+++++++.+++..|.+++...
T Consensus 3 k~~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~ 82 (494)
T 3swz_A 3 KKTGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMA 82 (494)
T ss_dssp ---------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCH
T ss_pred CCCCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcH
Confidence 3455678899999999999988743 367899999999999999999999999999999999999999888998888765
Q ss_pred HHHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 100 ATQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 100 ~~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
........+.|++++++|+.|+++|+++
T Consensus 83 ~~~~~~~~~~gl~~~~~g~~wr~~Rr~~ 110 (494)
T 3swz_A 83 TLDIASNNRKGIAFADSGAHWQLHRRLA 110 (494)
T ss_dssp HHHHHTTTTCSSSSSCSSHHHHHHHHHH
T ss_pred HHHHhccCCCCeEeCCCCHHHHHHHHHH
Confidence 5544433467888787799999999975
No 3
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.82 E-value=2.7e-20 Score=129.83 Aligned_cols=103 Identities=34% Similarity=0.601 Sum_probs=85.6
Q ss_pred cCCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHH
Q 047568 22 SYASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVAT 101 (128)
Q Consensus 22 ~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~ 101 (128)
+++.+.||||+++|++||+..+...+++..+.+++++||+++++++++.++|+++||+++++|+.++...|.+++.....
T Consensus 6 ~~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~ 85 (476)
T 3e6i_A 6 SSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAF 85 (476)
T ss_dssp ----CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGG
T ss_pred cCCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchh
Confidence 34456899999999999999886678899999999999999999999999999999999999998887788877665444
Q ss_pred HHhhcCCcceEecCCChhhHhhhhhc
Q 047568 102 QRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 102 ~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
.... +.|+++++ |++|+++|++.
T Consensus 86 ~~~~--~~~l~~~~-g~~w~~~Rr~~ 108 (476)
T 3e6i_A 86 HAHR--DRGIIFNN-GPTWKDIRRFS 108 (476)
T ss_dssp GGGT--TSSSTTCC-STTHHHHHHHH
T ss_pred heec--CCCEEecC-CcHHHHHHHHH
Confidence 4443 34888887 99999999864
No 4
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=130.85 Aligned_cols=105 Identities=26% Similarity=0.606 Sum_probs=68.8
Q ss_pred ccCCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHH
Q 047568 21 SSYASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVA 100 (128)
Q Consensus 21 ~~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~ 100 (128)
+.+..+.||||+++|++|++..+ ..+++..+.+++++||+++++++++.++|+++||+++++|+.++...|.+++....
T Consensus 4 ~~~~~~~pPgP~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~ 82 (507)
T 3pm0_A 4 KTSSKGKPPGPFAWPLIGNAAAV-GQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFAS 82 (507)
T ss_dssp -------------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHH
T ss_pred ccCCCCCCcCCCCCCeeCchhhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchH
Confidence 34455689999999999999888 67899999999999999999999999999999999999999888888988876554
Q ss_pred HHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 101 TQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 101 ~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
..... .+.|++++.+|++|+++|+++
T Consensus 83 ~~~~~-~g~~l~~~~~g~~w~~~R~~~ 108 (507)
T 3pm0_A 83 FRVVS-GGRSMAFGHYSEHWKVQRRAA 108 (507)
T ss_dssp HHHGG-GGTCSSSSCSSHHHHHHHHHH
T ss_pred HHhhc-CCCceEECCCChHHHHHHHHH
Confidence 43332 467776665599999999975
No 5
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.78 E-value=2.5e-20 Score=130.31 Aligned_cols=100 Identities=23% Similarity=0.373 Sum_probs=83.0
Q ss_pred CCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhc-CcccCCCCChHHHH
Q 047568 24 ASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAH-DLQFSGRPALVATQ 102 (128)
Q Consensus 24 ~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~-~~~~~~~~~~~~~~ 102 (128)
+...+|||+++|++||+..+ ..+++..+.+++++||+++++++++.++|+++||+++++|+.++ ...|.+++......
T Consensus 12 k~~~~PGP~~~PliGn~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~ 90 (485)
T 3nxu_A 12 KKLGIPGPTPLPFLGNILSY-HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVG 90 (485)
T ss_dssp HHHTCCCCCCBTTTBTGGGG-GGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCG
T ss_pred hhCCCCCCCCcCeecCcHHh-hcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccccccc
Confidence 34568999999999999988 56788999999999999999999999999999999999999876 56677665443222
Q ss_pred HhhcCCcceEecCCChhhHhhhhhcC
Q 047568 103 RLTYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 103 ~~~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
.. +.++++.+ |++|+++|++++
T Consensus 91 -~~--~~~l~~~~-g~~w~~~R~~~~ 112 (485)
T 3nxu_A 91 -FM--KSAISIAE-DEEWKRLRSLLS 112 (485)
T ss_dssp -GG--GGSTTTCC-HHHHHHHHHHHG
T ss_pred -cc--ccCccccC-CcHHHHHHhhcC
Confidence 22 57787777 999999999863
No 6
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.78 E-value=5.3e-20 Score=128.96 Aligned_cols=101 Identities=22% Similarity=0.450 Sum_probs=78.3
Q ss_pred ccCCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHH
Q 047568 21 SSYASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVA 100 (128)
Q Consensus 21 ~~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~ 100 (128)
..++.+.||||++ +..+...+++..+.+++++||+++++++++.++|+++||+++++|+.+++..|.+++....
T Consensus 24 ~~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~ 97 (496)
T 3qz1_A 24 KLRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPS 97 (496)
T ss_dssp -----CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTT
T ss_pred hccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcch
Confidence 4455678899876 4455568899999999999999999999999999999999999999888778887776543
Q ss_pred HHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 101 TQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 101 ~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
......++.|++++++|++|+++|+++
T Consensus 98 ~~~~~~~~~~l~~~~~g~~w~~~Rr~~ 124 (496)
T 3qz1_A 98 YKLVSQRCQDISLGDYSLLWKAHKKLT 124 (496)
T ss_dssp TTTSCTTCCCSSSSCCSHHHHHHHHHH
T ss_pred HHHhcCCCCceEECCCCHHHHHHHHHH
Confidence 333222233888887799999999986
No 7
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.78 E-value=7.8e-20 Score=128.29 Aligned_cols=104 Identities=20% Similarity=0.215 Sum_probs=78.3
Q ss_pred cCCCCCCCCCCCCceeccccCCCC---CCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCCh
Q 047568 22 SYASSLPPGPKGLPFIGNLHQFDA---SKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPAL 98 (128)
Q Consensus 22 ~~~~~~~pgp~~~~~~G~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~ 98 (128)
.++.+.+|||+++|++||+..+.. ...+..+.+++++||+++++++++.+.|+++||+++++++.+ +.|.+++..
T Consensus 41 ~~~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~ 118 (503)
T 3s79_A 41 YEGTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGS 118 (503)
T ss_dssp ----CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCC
T ss_pred HhccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchh
Confidence 345578999999999999987621 245567889999999999999999999999999999999954 457676654
Q ss_pred HHH-HHhhcCCcceEecCCChhhHhhhhhc
Q 047568 99 VAT-QRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 99 ~~~-~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
... ......+.|++++.+|+.|+++|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~ 148 (503)
T 3s79_A 119 KLGLQCIGMHEKGIIFNNNPELWKTTRPFF 148 (503)
T ss_dssp HHHHHHHTCTTSSSTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhccCCCceeeCCCccHHHHHHHhh
Confidence 332 22222467777666699999999976
No 8
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.78 E-value=1.1e-19 Score=126.74 Aligned_cols=108 Identities=20% Similarity=0.364 Sum_probs=85.6
Q ss_pred HhhccCCCCCCCCCCCCceeccccCCC----CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccC
Q 047568 18 HITSSYASSLPPGPKGLPFIGNLHQFD----ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFS 93 (128)
Q Consensus 18 ~~~~~~~~~~~pgp~~~~~~G~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~ 93 (128)
+....++...+|||+++|++|++..+. .++++..+.+++++||+++++++++.+.|+++||+++++|+.++ ..|.
T Consensus 16 ~~~~~~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~ 94 (482)
T 3k9v_A 16 TDGETRNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHP 94 (482)
T ss_dssp ---CCEEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSC
T ss_pred cccccCCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCC
Confidence 334567778899999999999987652 24678899999999999999999999999999999999999874 5677
Q ss_pred CCCChH---HHHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 94 GRPALV---ATQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 94 ~~~~~~---~~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
+++... ........+.|+++++ |++|+++||++
T Consensus 95 ~r~~~~~~~~~~~~~~~~~~l~~~~-g~~w~~~Rr~~ 130 (482)
T 3k9v_A 95 QRLEIKPWKAYRDHRNEAYGLMILE-GQEWQRVRSAF 130 (482)
T ss_dssp CCCCCHHHHHHHHHHTCCCCTTTCC-HHHHHHHHHHH
T ss_pred CCCCchHHHHHHHhcCCCCCceeCC-CchHHHHHHHh
Confidence 776532 2222333478888887 99999999975
No 9
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.76 E-value=5.4e-19 Score=124.15 Aligned_cols=103 Identities=28% Similarity=0.636 Sum_probs=83.4
Q ss_pred CCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHH
Q 047568 23 YASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQ 102 (128)
Q Consensus 23 ~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~ 102 (128)
++...+|||+++|++|++..+ ..+++..+.+++++||+++++++++.++++++||+++++|+.++...|.+++......
T Consensus 13 ~~lp~~PgP~~~p~~G~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~ 91 (495)
T 2hi4_A 13 KGLKSPPEPWGWPLLGHVLTL-GKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTST 91 (495)
T ss_dssp TTCBCCCCCCCBTTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHH
T ss_pred CCCCCCCCCCCCcceeeHHhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHH
Confidence 344456999999999999877 5678899999999999999999999999999999999999987766787776543332
Q ss_pred HhhcCCcceEec-CCChhhHhhhhhc
Q 047568 103 RLTYNGLDLVFS-PYGAYWREIRKIC 127 (128)
Q Consensus 103 ~~~~~~~~l~~~-~~g~~wk~~R~~l 127 (128)
.. ..+.|++++ ++|++|+++|+++
T Consensus 92 ~~-~~~~~l~~~~~~g~~w~~~Rr~~ 116 (495)
T 2hi4_A 92 LI-TDGQSLTFSTDSGPVWAARRRLA 116 (495)
T ss_dssp TS-TTSCCTTTSSCCSHHHHHHHHHH
T ss_pred Hh-cCCCCEEEcCCCChHHHHHHHHH
Confidence 22 235777777 3499999999976
No 10
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.75 E-value=1.2e-18 Score=121.79 Aligned_cols=101 Identities=33% Similarity=0.684 Sum_probs=82.9
Q ss_pred CCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHh
Q 047568 25 SSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRL 104 (128)
Q Consensus 25 ~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~ 104 (128)
...+|||+++|++|++..+...+++..+.+++++||+++++++++.+.|+++||+++++|+.++...|.+++........
T Consensus 9 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~ 88 (476)
T 1po5_A 9 GKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPI 88 (476)
T ss_dssp CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCSC
T ss_pred CCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHhh
Confidence 35789999999999998875578899999999999999999999999999999999999997766678766543322221
Q ss_pred hcCCcceEecCCChhhHhhhhhc
Q 047568 105 TYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 105 ~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
..+.|+++++ |++|+++|+++
T Consensus 89 -~~~~~l~~~~-g~~w~~~Rr~~ 109 (476)
T 1po5_A 89 -FQGYGVIFAN-GERWRALRRFS 109 (476)
T ss_dssp -CSSCCCCCSS-HHHHHHHHHHH
T ss_pred -cCCCceEecC-CcHHHHHHHHH
Confidence 2367888887 99999999864
No 11
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.75 E-value=2.2e-18 Score=120.54 Aligned_cols=101 Identities=31% Similarity=0.598 Sum_probs=83.3
Q ss_pred CCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHh
Q 047568 25 SSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRL 104 (128)
Q Consensus 25 ~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~ 104 (128)
...+|||+++|++|++..+...+++..+.+++++||+++++++++.+.++++||+++++|+.++...|.+++........
T Consensus 9 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~ 88 (476)
T 2fdv_A 9 GKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDWV 88 (476)
T ss_dssp CBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHHHH
T ss_pred CCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHhhh
Confidence 35789999999999998875578899999999999999999999999999999999999997766678766554332222
Q ss_pred hcCCcceEecCCChhhHhhhhhc
Q 047568 105 TYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 105 ~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
. .+.|+++++ |++|+++|+++
T Consensus 89 ~-~~~~l~~~~-g~~~~~~Rr~~ 109 (476)
T 2fdv_A 89 F-KGYGVVFSN-GERAKQLRRFS 109 (476)
T ss_dssp H-TTCSSSSCC-HHHHHHHHHHH
T ss_pred c-CCCCeEecC-chHHHHHHHHH
Confidence 2 367888887 99999999975
No 12
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.73 E-value=8.7e-19 Score=122.11 Aligned_cols=101 Identities=17% Similarity=0.256 Sum_probs=82.6
Q ss_pred CCCCCCCCCC-CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHH-H
Q 047568 24 ASSLPPGPKG-LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVA-T 101 (128)
Q Consensus 24 ~~~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~-~ 101 (128)
..+.||+|++ +|++||+..+ ..+++.++.+++++|||++++++++.++|+++||+++++++.+++..|.+++.... .
T Consensus 9 g~~~PP~~~~~lP~iG~~~~~-~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~ 87 (461)
T 3ld6_A 9 GVKSPPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLT 87 (461)
T ss_dssp -CCCCCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHH
T ss_pred CCCCCCCCCCCcCeeeeHHHh-hhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhh
Confidence 3456777765 8999999887 77899999999999999999999999999999999999999888777776654332 3
Q ss_pred HHhhcCCcceEecCCChhhHhhhhhc
Q 047568 102 QRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 102 ~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
.... |.|+++..+|+.|+++|+++
T Consensus 88 ~~~~--g~~~~~~~~~~~~~~~R~~~ 111 (461)
T 3ld6_A 88 TPVF--GKGVAYDVPNPVFLEQKKML 111 (461)
T ss_dssp HHHH--CTTSGGGSCHHHHHHHHHHH
T ss_pred hccC--CCccccCCCcHHHHHHHHhc
Confidence 3333 67777665599999999975
No 13
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.72 E-value=9.7e-19 Score=121.12 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=83.8
Q ss_pred CCCCCCCCC-CceeccccCCCCCCchHHHHHHHhhcC-CeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHH
Q 047568 25 SSLPPGPKG-LPFIGNLHQFDASKPHVSFWELSKKYG-PLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQ 102 (128)
Q Consensus 25 ~~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~ 102 (128)
.+.||||++ +|++||+..+ ..+++..+.+++++|| +++++++++.++|+++||+++++++.++...|.+++......
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~ 80 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQF-GKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMV 80 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHH-HHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGH
T ss_pred CCCCCCCCCCcchhccHHHH-ccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHH
Confidence 457889775 9999999887 5788999999999999 999999999999999999999999988777787776555444
Q ss_pred HhhcCCcceEecCCChhhHhhhhhc
Q 047568 103 RLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 103 ~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
... |.|+++..+|+.|+++|+++
T Consensus 81 ~~~--g~~~~~~~~~~~~~~~R~~~ 103 (450)
T 3gw9_A 81 PVF--GEGVAYAAPYPRMREQLNFL 103 (450)
T ss_dssp HHH--CTTSGGGSCHHHHHHHHHHH
T ss_pred HHh--cCCcccCCCcHHHHHHHHHH
Confidence 444 67777654599999999875
No 14
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.72 E-value=5e-18 Score=118.93 Aligned_cols=104 Identities=37% Similarity=0.632 Sum_probs=80.6
Q ss_pred CCCCCCCCCCCCceeccccCCCCCC--chHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHH
Q 047568 23 YASSLPPGPKGLPFIGNLHQFDASK--PHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVA 100 (128)
Q Consensus 23 ~~~~~~pgp~~~~~~G~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~ 100 (128)
++.+.+|||+++|++|++..+.... ++..+.+++++||+++++++++.++++++||+++++|+.++...|++++....
T Consensus 9 ~~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~ 88 (481)
T 3czh_A 9 RPMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPL 88 (481)
T ss_dssp ---CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHH
T ss_pred CCCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHH
Confidence 3456789999999999987663333 78899999999999999999999999999999999999887677877765433
Q ss_pred HHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 101 TQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 101 ~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
..... ++.|++++.+|++|+++|+++
T Consensus 89 ~~~~~-~~~~~~~~~~g~~w~~~R~~~ 114 (481)
T 3czh_A 89 FMKMT-KMGGLLNSRYGRGWVDHRRLA 114 (481)
T ss_dssp HHHHH-TTCSSTTCCSSHHHHHHHHHH
T ss_pred HHhhc-CCCCeEeCCCChHHHHHHHHH
Confidence 33332 345655544499999999976
No 15
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.71 E-value=2.6e-18 Score=120.06 Aligned_cols=101 Identities=38% Similarity=0.681 Sum_probs=75.8
Q ss_pred CCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHh
Q 047568 25 SSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRL 104 (128)
Q Consensus 25 ~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~ 104 (128)
...+|||+++|++|++..+...+++..+.+++++||+++++++++.+.|+++||+++++|+.++...|.+++........
T Consensus 10 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~~ 89 (477)
T 1r9o_A 10 GKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERA 89 (477)
T ss_dssp CBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCTT
T ss_pred CCCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhhc
Confidence 35789999999999998774466788999999999999999999889999999999999997766677665532211111
Q ss_pred hcCCcceEecCCChhhHhhhhhc
Q 047568 105 TYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 105 ~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
..+.|+++++ |++|+++|+++
T Consensus 90 -~~~~~l~~~~-g~~w~~~Rr~~ 110 (477)
T 1r9o_A 90 -NRGFGIVFSN-GKKWKEIRRFS 110 (477)
T ss_dssp -TCTTSSTTCC-HHHHHHHHHHH
T ss_pred -cCCCceEecC-ChHHHHHHHHH
Confidence 1357888886 99999999864
No 16
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.70 E-value=6.6e-18 Score=117.55 Aligned_cols=104 Identities=16% Similarity=0.235 Sum_probs=81.8
Q ss_pred ccCCCCCCCC-CCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChH
Q 047568 21 SSYASSLPPG-PKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALV 99 (128)
Q Consensus 21 ~~~~~~~~pg-p~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~ 99 (128)
.....+.||| |+++|++||+..+ ..+++.++.+++++||+++++++++.+.|+++||+.+++++.++...+.++....
T Consensus 6 ~~~~~~~PPg~P~~lP~iG~l~~~-~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~ 84 (461)
T 3i3k_A 6 LPAGVKSPPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYS 84 (461)
T ss_dssp ----CCCCCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHH
T ss_pred CCCCCCCCCCCCCCCCccccHHhh-ccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHH
Confidence 3445568899 7889999999887 5788999999999999999999999999999999999999987766665433222
Q ss_pred -HHHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 100 -ATQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 100 -~~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
...... |.|+++..+|+.|+++|+++
T Consensus 85 ~~~~~~~--g~g~~~~~~g~~w~~~Rr~~ 111 (461)
T 3i3k_A 85 RLTTPVF--GKGVAYDVPNPVFLEQKKML 111 (461)
T ss_dssp HHHHHHH--CTTSGGGSCHHHHHHHHHHH
T ss_pred Hhhhhhc--CCeeeeCCCcHHHHHHHHHH
Confidence 223333 77887775599999999976
No 17
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.64 E-value=3.8e-17 Score=114.55 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=79.5
Q ss_pred hccCCCCCCCCCCC-CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCC-
Q 047568 20 TSSYASSLPPGPKG-LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPA- 97 (128)
Q Consensus 20 ~~~~~~~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~- 97 (128)
..++..+.||||++ +|++|++..+ ..+++.++.+++++||+++++++++.++++++||+++++++.++.. +.....
T Consensus 7 ~~~~~~~~PPgp~~~lPliG~~~~~-~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~-~~~~~~~ 84 (491)
T 3v8d_A 7 SRRRQTGEPPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKY-FDWKKFH 84 (491)
T ss_dssp CCCCCTTSCCEEEEEESSTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTT-EESSHHH
T ss_pred hhccCCCCCCCCCCCcceeccHHHH-hcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCc-cchHHHH
Confidence 34455678999998 7999999998 7899999999999999999999999999999999999999966432 322222
Q ss_pred hHHHHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 98 LVATQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
........ |.+.+...+|+.|+++|+.+
T Consensus 85 ~~~~~~~~--g~~~~~~~~g~~~~~~Rr~~ 112 (491)
T 3v8d_A 85 FALSAKAF--GHRSIDPMDGNTTENINDTF 112 (491)
T ss_dssp HHHHHHHH--TCCCCCGGGSSBCCCHHHHH
T ss_pred HHHHHHhc--CCcccccccchhHHHHHHHH
Confidence 22223333 44444443499999999864
No 18
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.64 E-value=3.4e-16 Score=109.42 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=76.8
Q ss_pred CCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHH--HHH
Q 047568 26 SLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVA--TQR 103 (128)
Q Consensus 26 ~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~--~~~ 103 (128)
+.+|||+++|++|++..+...+++..+.+++++||+++++++++.+.++++||+++++|+.+ ..|.+...... ...
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~--~~f~~~~~~~~~~~~~ 80 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE--SRFDKNLSQALKFVRD 80 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT--TTEEECCCHHHHHHHH
T ss_pred CCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh--cCcCcCchhHHHHHHH
Confidence 56899999999999988755678888999999999999999999999999999999999954 23533222111 112
Q ss_pred hhcCCcceEec-CCChhhHhhhhhcC
Q 047568 104 LTYNGLDLVFS-PYGAYWREIRKICV 128 (128)
Q Consensus 104 ~~~~~~~l~~~-~~g~~wk~~R~~l~ 128 (128)
.. +.|++++ .+|++|+++|++++
T Consensus 81 ~~--~~~l~~~~~~g~~w~~~Rr~~~ 104 (470)
T 2ij2_A 81 FA--GDGLFTSWTHEKNWKKAHNILL 104 (470)
T ss_dssp HH--TTSGGGSCTTSHHHHHHHHHHG
T ss_pred hc--CCceEEcCCCchHHHHHHHHhc
Confidence 22 6778776 34999999999863
No 19
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.64 E-value=5.7e-17 Score=112.61 Aligned_cols=103 Identities=24% Similarity=0.313 Sum_probs=77.7
Q ss_pred hccCCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChH
Q 047568 20 TSSYASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALV 99 (128)
Q Consensus 20 ~~~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~ 99 (128)
...++.+.+|||+++|++|++..+ ..+++ .+.+++++||+++++++++.+.++++||+++++|+.++...|+.+...
T Consensus 6 ~~~~~~~~pPgp~~~P~iG~~~~~-~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~- 82 (444)
T 2ve3_A 6 TNLNSLPIPPGDFGLPWLGETLNF-LNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPL- 82 (444)
T ss_dssp ---CCCCCCCCCCCBTTTBTHHHH-HHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCH-
T ss_pred CCCCCCCCCCCCCCCCccccHHHH-hcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhH-
Confidence 345566789999999999998776 34456 788999999999999988888999999999999998765556533222
Q ss_pred HHHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 100 ATQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 100 ~~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
...... +..++++.+ |++|+++|+++
T Consensus 83 ~~~~~~-g~~~l~~~~-g~~~~~~R~~~ 108 (444)
T 2ve3_A 83 STRILL-GPNALATQM-GEIHRSRRKIL 108 (444)
T ss_dssp HHHHHH-CTTSGGGCC-HHHHHHHHHHH
T ss_pred HHHHHh-CccccccCC-chHHHHHHHHH
Confidence 222333 223777776 99999999975
No 20
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.64 E-value=7.9e-17 Score=112.65 Aligned_cols=104 Identities=20% Similarity=0.254 Sum_probs=79.7
Q ss_pred ccCCCCCCCCCCCCceeccccCCC----CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCC
Q 047568 21 SSYASSLPPGPKGLPFIGNLHQFD----ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRP 96 (128)
Q Consensus 21 ~~~~~~~~pgp~~~~~~G~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~ 96 (128)
..++.+.+|||+..++. +++.+. ..+++..+.+++++||+++++++|+.+.|+++||+++++|+.++ +.|.+++
T Consensus 4 ~~~pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~f~~r~ 81 (487)
T 3n9y_A 4 SPRPFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSE-GPNPERF 81 (487)
T ss_dssp CCBCGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTC-CSSCCCC
T ss_pred CCCCHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhC-CCCCCCC
Confidence 45667789999877665 554331 24678899999999999999999999999999999999999766 4677776
Q ss_pred ChHH---HHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 97 ALVA---TQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 97 ~~~~---~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
.... .......+.|+++.+ |++|+++|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~-g~~w~~~Rr~l 114 (487)
T 3n9y_A 82 LIPPWVAYHQYYQRPIGVLLKK-SAAWKKDRVAL 114 (487)
T ss_dssp CCHHHHHHHHHTTCCCCGGGCC-HHHHHHHHHHH
T ss_pred CCcHHHHHHHHccccCCCccCC-cHHHHHHHHhc
Confidence 5332 112223467888777 99999999975
No 21
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.62 E-value=5.1e-16 Score=108.13 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=64.4
Q ss_pred CCCCC-CCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHh
Q 047568 26 SLPPG-PKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRL 104 (128)
Q Consensus 26 ~~~pg-p~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~ 104 (128)
+.||| |+++|++|++..+ ..+++..+.+++++||+++++++++.++++++||+++++|+.+++..|.+++........
T Consensus 4 ~~PPg~p~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 82 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEF-RTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPI 82 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHH
T ss_pred CCCCCCCCCCCCccCHHHH-hhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhh
Confidence 46787 6789999999887 678899999999999999999999999999999999999998766667666544333333
Q ss_pred hcCCcceEecCCChhhHhhhhhc
Q 047568 105 TYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 105 ~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
. |.+++ .+ |++|+++|+++
T Consensus 83 ~--g~~~~-~~-~~~~~~~R~~~ 101 (455)
T 2cib_A 83 F--GEGVV-FD-ASPERRKEMLH 101 (455)
T ss_dssp H--C-------------------
T ss_pred c--CCccc-cC-cHHHHHHHhhh
Confidence 3 45554 56 99999999976
No 22
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.60 E-value=1.9e-16 Score=110.50 Aligned_cols=97 Identities=16% Similarity=0.279 Sum_probs=60.0
Q ss_pred CCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCccc-CCCCChHHHHH
Q 047568 25 SSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQF-SGRPALVATQR 103 (128)
Q Consensus 25 ~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~-~~~~~~~~~~~ 103 (128)
...||||+++|++|++..+ ..+++.++.++++ ||+++++++++.++++++||+++++|+.++ .| .+++.......
T Consensus 22 ~eppPgP~~~P~iG~~~~~-~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~ 97 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRL-ARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEG 97 (467)
T ss_dssp CBCCEECCCCSTTHHHHHH-HHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC------------
T ss_pred CCCCCCCCCCCcccchHHh-ccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHH
Confidence 3457899999999999887 5788899999988 999999999999999999999999999775 45 33322222223
Q ss_pred hhcCCcceEecCCChhhHhhhhhc
Q 047568 104 LTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 104 ~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
.. +..++++.+ |++|+++|+++
T Consensus 98 ~~-g~~~l~~~d-g~~h~~~R~~l 119 (467)
T 3dbg_A 98 LL-GKEGVATAN-GPLHRRQRRTI 119 (467)
T ss_dssp --------------------CGGG
T ss_pred hc-CCCCcccCC-cHHHHHHHHHh
Confidence 32 227788877 99999999986
No 23
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.58 E-value=2.3e-16 Score=109.60 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=68.7
Q ss_pred cCCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHhcCcccCCCCChHH
Q 047568 22 SYASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKAHDLQFSGRPALVA 100 (128)
Q Consensus 22 ~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~ 100 (128)
++..+.+|||+++|++|++......+++..+.++ ++|||++++++ ++.+.++++||+++++|+.++ .|.+++....
T Consensus 22 ~~~~~~~PGP~~~p~lG~~~~~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~ 98 (436)
T 2cd8_A 22 RRTQQGTTASPPVLDLGALGQDFAADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNST 98 (436)
T ss_dssp ------------CCBHHHHHHHHHHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCS
T ss_pred chhccCCCCCCccccCCCCCcccccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCcccccccc
Confidence 3445678999999999997522256789999999 99999999997 778899999999999999765 4666543111
Q ss_pred HHHh---hcCCcceEecCCChhhHhhhhhcC
Q 047568 101 TQRL---TYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 101 ~~~~---~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
.... ...+.++++.+ |++|+++|++++
T Consensus 99 ~~~~~~~~~~~~~l~~~d-g~~h~~~R~~~~ 128 (436)
T 2cd8_A 99 TPLTEAEAALNHNMLESD-PPRHTRLRKLVA 128 (436)
T ss_dssp SCCCTTGGGTCCSGGGCC-TTHHHHHHHHHG
T ss_pred cccccccccccccccccC-chHHHHHHHHhH
Confidence 1000 11367777776 999999999863
No 24
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.54 E-value=7.9e-16 Score=107.70 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=75.1
Q ss_pred CCCCCCCCCCC-CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCCh-HH
Q 047568 23 YASSLPPGPKG-LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPAL-VA 100 (128)
Q Consensus 23 ~~~~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~-~~ 100 (128)
.....+|||++ +|++|++..+ ..+++..+.+++++||+++++++++.++|+++||+++++++.++.. +..+... ..
T Consensus 10 ~~~~~pPgp~~~~P~iG~~~~~-~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~-~~~~~~~~~~ 87 (491)
T 3dax_A 10 RQTGEPPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKY-FDWKKFHFAT 87 (491)
T ss_dssp CCTTCCCEEEEEESCTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTT-EESSHHHHHH
T ss_pred cCCCCCCcCCCcccchhhHHHH-hhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCcc-CChHHHHHHH
Confidence 34457888887 8999999887 5688999999999999999999999999999999999999966432 2212211 12
Q ss_pred HHHhhcCCcceE-ecCCChhhHhhhhhc
Q 047568 101 TQRLTYNGLDLV-FSPYGAYWREIRKIC 127 (128)
Q Consensus 101 ~~~~~~~~~~l~-~~~~g~~wk~~R~~l 127 (128)
..... |.+++ ..+ |+.|+++|+.+
T Consensus 88 ~~~~~--g~~~~~~~~-g~~w~~~r~~~ 112 (491)
T 3dax_A 88 SAKAF--GHRSIDPMD-GNTTENINDTF 112 (491)
T ss_dssp HHHHH--TCCCCCGGG-TSBCCCHHHHH
T ss_pred HHHHc--CCCcccccc-hhHHHHHHHHH
Confidence 22233 56666 555 89999888753
No 25
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.51 E-value=4.6e-15 Score=104.12 Aligned_cols=100 Identities=11% Similarity=0.139 Sum_probs=74.4
Q ss_pred ccCCCCCCCCCCC-CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCCh-
Q 047568 21 SSYASSLPPGPKG-LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPAL- 98 (128)
Q Consensus 21 ~~~~~~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~- 98 (128)
..+..+.||||++ +|++|++..+ ..+++..+.+++++||+++++++++.++++++||+++++++.++...+..++..
T Consensus 13 ~~~~~~~PPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~ 91 (498)
T 3b6h_A 13 RTRRPGEPPLDLGSIPWLGYALDF-GKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAI 91 (498)
T ss_dssp CCCCTTCCCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHH
T ss_pred hccCCCCCCCCCCCCcchhhHHHh-ccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHH
Confidence 3445567899988 8999999877 457899999999999999999999999999999999999997654323322222
Q ss_pred HHHHHhhcCCcceEecCCChhhHhhh
Q 047568 99 VATQRLTYNGLDLVFSPYGAYWREIR 124 (128)
Q Consensus 99 ~~~~~~~~~~~~l~~~~~g~~wk~~R 124 (128)
....... |.+++..+ |+.|++.+
T Consensus 92 ~~~~~~~--g~~~~~~~-~~~~rr~~ 114 (498)
T 3b6h_A 92 FLMERIF--DVQLPHYS-PSDEKARM 114 (498)
T ss_dssp HHHHHTS--CCCCTTCC-HHHHHHHH
T ss_pred HHHHHHc--CCCccccC-HHHHHHHH
Confidence 1222222 56666565 88887543
No 26
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.51 E-value=1.7e-15 Score=103.65 Aligned_cols=92 Identities=20% Similarity=0.173 Sum_probs=74.2
Q ss_pred CCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCC-ChHHHHHhhcCC
Q 047568 30 GPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRP-ALVATQRLTYNG 108 (128)
Q Consensus 30 gp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~-~~~~~~~~~~~~ 108 (128)
+++..|++||+..+ ..+++..+.+++++|||+++ ++++.+.++++||+++++++.++ .|.+++ ......... |
T Consensus 3 ~~~~~p~iGnl~~~-~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~--g 76 (389)
T 1n97_A 3 RLSLREAWPYLKDL-QQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLT--G 76 (389)
T ss_dssp ECCHHHHHHHHHHH-HHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHH--C
T ss_pred ccccccccccHHHH-hhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHh--C
Confidence 44557899999877 46788999999999999999 88888999999999999999775 677765 232333343 5
Q ss_pred cceEecCCChhhHhhhhhcC
Q 047568 109 LDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 109 ~~l~~~~~g~~wk~~R~~l~ 128 (128)
.++++++ |++|+++|++++
T Consensus 77 ~~l~~~~-g~~h~~~R~~~~ 95 (389)
T 1n97_A 77 RGLLTDW-GESWKEARKALK 95 (389)
T ss_dssp SSTTTCC-HHHHHHHHHHHC
T ss_pred CccccCC-cHHHHHHHHHhC
Confidence 7888777 999999999864
No 27
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.44 E-value=1.3e-14 Score=101.09 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=73.6
Q ss_pred cCCCCCCCCCCC-CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCCh-H
Q 047568 22 SYASSLPPGPKG-LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPAL-V 99 (128)
Q Consensus 22 ~~~~~~~pgp~~-~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~-~ 99 (128)
+...+.||||++ +|++||+..+ ..+++..+.+++++||+++++++++.++++++||+++++++.++.. +..++.. .
T Consensus 14 ~~~~~~pPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~~ 91 (475)
T 3b98_A 14 TRRRNEPPLDKGMIPWLGHALEF-GKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQV 91 (475)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHHH
T ss_pred ccCCCCCCCCCCCcchHHhHHHH-hhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHHH
Confidence 445567899988 8999999877 5678999999999999999999999999999999999999976432 3222211 1
Q ss_pred HHHHhhcCCcceEecCCChhhHhhh
Q 047568 100 ATQRLTYNGLDLVFSPYGAYWREIR 124 (128)
Q Consensus 100 ~~~~~~~~~~~l~~~~~g~~wk~~R 124 (128)
...... |.+++..+ |+.||+..
T Consensus 92 ~~~~~~--g~~~~~~~-~~~~R~~~ 113 (475)
T 3b98_A 92 LMKRIF--NMILPSHN-PESEKKRA 113 (475)
T ss_dssp HHHHTT--CCCCTTCC-HHHHHHHH
T ss_pred HHHHHh--CCCCCCCC-hHHHHHHH
Confidence 222222 56666666 88887543
No 28
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.38 E-value=4.7e-13 Score=91.94 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=64.6
Q ss_pred CCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC-CcCeEEEccHHHHHHHHHhcC-cccCCCCChH----H
Q 047568 27 LPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG-FVPTLIVSSAKMAKETLKAHD-LQFSGRPALV----A 100 (128)
Q Consensus 27 ~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~v~v~dp~~~~~vl~~~~-~~~~~~~~~~----~ 100 (128)
.||||+++|++|++.. +++..+.++. +|||++++.++ +.+.+++++++.+++++.++. ..+..++... .
T Consensus 2 ~pPGp~~~P~~g~~~~----~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~ 76 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP----EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSAS 76 (404)
T ss_dssp ----CCBSSCCCSSTT----SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHH
T ss_pred CCCCCCCCCCCCCcCC----CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCcccccc
Confidence 4899999999999753 7888888886 69999998864 556677899999999997652 2233333211 1
Q ss_pred HHHhhcCCcceEecCCChhhHhhhhhcC
Q 047568 101 TQRLTYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 101 ~~~~~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
......++.++++++ |++|+++|++++
T Consensus 77 ~~~~~~~~~~l~~~~-g~~h~~~R~~~~ 103 (404)
T 1jfb_A 77 GKQAAKAKPTFVDMD-PPEHMHQRSMVE 103 (404)
T ss_dssp HHHHTTSCCCGGGCC-TTHHHHHHTTTG
T ss_pred ccchhcccCcccccC-chhHHHHHHHhh
Confidence 111122345677776 999999999863
No 29
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.33 E-value=1.2e-12 Score=90.06 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=69.1
Q ss_pred CCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEE----e-CC-cCeEEEccHHHHHHHH-HhcCcccCCC
Q 047568 23 YASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLR----L-GF-VPTLIVSSAKMAKETL-KAHDLQFSGR 95 (128)
Q Consensus 23 ~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~-~~-~~~v~v~dp~~~~~vl-~~~~~~~~~~ 95 (128)
.....+|||++.|+. + ..+++..+.++ ++||++++++ + ++ .+.++++||+++++|+ .++ + |.++
T Consensus 7 ~~~~lppgp~~~p~~-----~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~-~-~~~~ 77 (406)
T 1ued_A 7 QVAPLLREPANFQLR-----T-NCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE-H-FTTR 77 (406)
T ss_dssp SCCCEEECCTTTTCE-----E-TTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS-S-EECC
T ss_pred CCCCCcccCcccCCC-----C-CCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc-c-cccc
Confidence 345567888888876 3 56889999999 9999999999 6 78 8999999999999999 443 3 5554
Q ss_pred CChHH----HHHhhcCCcceEecCCChhhHhhhhhcC
Q 047568 96 PALVA----TQRLTYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 96 ~~~~~----~~~~~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
+.... .......+.++++.+ |++|+++|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~R~~~~ 113 (406)
T 1ued_A 78 PQFTQSKSGAHVEAQFVGQISTYD-PPEHTRLRKMLT 113 (406)
T ss_dssp CCC---------CGGGTTCGGGCC-TTHHHHHHHHHG
T ss_pred ccccccccccccccccccccccCC-CHHHHHHHHHhh
Confidence 43111 110000245677776 999999999863
No 30
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.31 E-value=2.6e-12 Score=89.21 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=61.6
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHH-HHHhh---cCCcceEecCCChhh
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVA-TQRLT---YNGLDLVFSPYGAYW 120 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~-~~~~~---~~~~~l~~~~~g~~w 120 (128)
+..++..+.+|+++|||++++++++.+.|+++||+++++|+.+ ..|.+++.... ..... ..|.|++++.+|++|
T Consensus 9 g~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w 86 (456)
T 3mdm_A 9 GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMS--TKYNKDSKMYRALQTVFGERLFGQGLVSECNYERW 86 (456)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTC--TTSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHH
T ss_pred cchHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhh--ccccccchhHHHHHHhhcccccCCCcccCCChHHH
Confidence 4677889999999999999999999999999999999999964 34544433221 11111 125777776459999
Q ss_pred HhhhhhcC
Q 047568 121 REIRKICV 128 (128)
Q Consensus 121 k~~R~~l~ 128 (128)
+++|++++
T Consensus 87 ~~~Rr~~~ 94 (456)
T 3mdm_A 87 HKQRRVID 94 (456)
T ss_dssp HHHHHHHG
T ss_pred HHHHhhcc
Confidence 99999763
No 31
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.31 E-value=6e-13 Score=91.74 Aligned_cols=91 Identities=14% Similarity=0.043 Sum_probs=67.4
Q ss_pred CCCceeccccCCCCCCchHHHHHHHhhcC-CeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCCh--HHHHHhhcCC
Q 047568 32 KGLPFIGNLHQFDASKPHVSFWELSKKYG-PLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPAL--VATQRLTYNG 108 (128)
Q Consensus 32 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~--~~~~~~~~~~ 108 (128)
|+.|++|++..+ ..+++.++.+++++|| |++++.+++.+.++++||++++.++ + ...|.++... .....+. +.
T Consensus 6 Pg~P~lG~~~~~-~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~-g~ 81 (417)
T 1izo_A 6 PHDKSLDNSLTL-LKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-D-TDRFQRQNALPKRVQKSLF-GV 81 (417)
T ss_dssp CBCCCTTHHHHH-HHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-C-TTTEECTTCSCHHHHTTTT-CT
T ss_pred CCCCccchHHHH-hhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-c-ccccccccccccchhhhhc-cc
Confidence 334899999887 5688999999999998 8999998888999999999998554 3 2345443321 2222232 22
Q ss_pred cceEecCCChhhHhhhhhc
Q 047568 109 LDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 109 ~~l~~~~~g~~wk~~R~~l 127 (128)
.++++++ |++|+++|+++
T Consensus 82 ~~l~~~d-g~~h~~~R~~~ 99 (417)
T 1izo_A 82 NAIQGMD-GSAHIHRKMLF 99 (417)
T ss_dssp TCGGGCC-HHHHHHHHHHH
T ss_pred cceeecC-ChHHHHHHHHh
Confidence 5677776 99999999975
No 32
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.27 E-value=6.1e-12 Score=86.74 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=65.6
Q ss_pred CCCCCCCCCceeccccCCCCCCchHHHHHHHhhc-CCeEEEEe-CCcCeEEEccHHHHHHHHHhcCcccCCCCC---hHH
Q 047568 26 SLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKY-GPLMSLRL-GFVPTLIVSSAKMAKETLKAHDLQFSGRPA---LVA 100 (128)
Q Consensus 26 ~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~---~~~ 100 (128)
..+|+|+..|.+..-..+ ..+++..+.++ ++| ||++++.+ ++.+.++++||+++++|+.++ .+.+++. ...
T Consensus 5 ~~~~~~~~~P~~~~~~~~-~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~ 80 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSC-PYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP--RLSSNRTDDNFPA 80 (412)
T ss_dssp ---CCCCSSCBSSCCCSS-TTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEECCTTSTTSCC
T ss_pred CCCCCCCCCCCCCCCchh-ccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc--ccccCcccccccc
Confidence 345666666655322334 67899999999 788 99999997 788999999999999999754 2444332 111
Q ss_pred HH----HhhcCCcceEecCCChhhHhhhhhcC
Q 047568 101 TQ----RLTYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 101 ~~----~~~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
.. .....+.++++.+ |++|+++|++++
T Consensus 81 ~~~~~~~~~~~~~~l~~~~-g~~h~~~R~~~~ 111 (412)
T 2zbx_A 81 TSPRFEAVRESPQAFIGLD-PPEHGTRRRMTI 111 (412)
T ss_dssp CSGGGC----CCCCGGGCC-TTHHHHHHTTTG
T ss_pred cccccccccccccccccCC-cHHHHHHHHHhh
Confidence 00 0100245677776 999999999863
No 33
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.26 E-value=1.8e-12 Score=89.35 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=65.6
Q ss_pred CCCCCCCceeccccCCCCCCchHHHHHHHhhc-CCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCCh--HHHHHh
Q 047568 28 PPGPKGLPFIGNLHQFDASKPHVSFWELSKKY-GPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPAL--VATQRL 104 (128)
Q Consensus 28 ~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~--~~~~~~ 104 (128)
+||| |++|++..+ ..+++.++.+++++| ||++++..++.+.++++||+.++ ++.+. +.|.+++.. ......
T Consensus 4 pPg~---P~iG~~~~~-~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~ 77 (415)
T 3awm_A 4 TPHT---KGPDETLSL-LADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTL 77 (415)
T ss_dssp --------CCCCHHHH-HHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTT
T ss_pred CCCC---CccchHHHH-HhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhc
Confidence 4554 799998877 568999999999999 79999998888999999999987 66543 456554322 122222
Q ss_pred hcCCcceEecCCChhhHhhhhhc
Q 047568 105 TYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 105 ~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
. +..++++++ |++|+++|+++
T Consensus 78 ~-g~~~l~~~d-g~~h~~~R~~~ 98 (415)
T 3awm_A 78 L-GQGGVQGLD-GETHRHRKQMF 98 (415)
T ss_dssp S-CSSSGGGCC-HHHHHHHHHHH
T ss_pred c-CCcceeecC-cHHHHHHHHHH
Confidence 2 235677776 99999999976
No 34
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.25 E-value=1.3e-12 Score=91.69 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=71.4
Q ss_pred ccCCCCCCCCCCCCceeccccCCC----CCCchHHHHHHHhhcCC-eEEEEeCCcCe-------EEEccHHHHHHHHHhc
Q 047568 21 SSYASSLPPGPKGLPFIGNLHQFD----ASKPHVSFWELSKKYGP-LMSLRLGFVPT-------LIVSSAKMAKETLKAH 88 (128)
Q Consensus 21 ~~~~~~~~pgp~~~~~~G~~~~~~----~~~~~~~~~~~~~~~g~-~~~~~~~~~~~-------v~v~dp~~~~~vl~~~ 88 (128)
...+.+.||||.++|++|++..+. ..+++.++.++.++||+ ++++++++.++ |++.|++..+.++...
T Consensus 23 ~~~p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~ 102 (495)
T 3dsk_A 23 KDLPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVD 102 (495)
T ss_dssp -CCCBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTT
T ss_pred CCCCCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecccc
Confidence 344567899999999999987653 57899999999999999 99999998887 6777777776666332
Q ss_pred C----cccCCCCChHHHHHhhc-C-CcceEecCCChhhHhhhhhc
Q 047568 89 D----LQFSGRPALVATQRLTY-N-GLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 89 ~----~~~~~~~~~~~~~~~~~-~-~~~l~~~~~g~~wk~~R~~l 127 (128)
. +.+........ .+.+ . ..+++..+ |+.|+++|+++
T Consensus 103 ~v~k~~~~~~~~~~~~--~l~g~~~~~~~~~~~-g~~h~~~R~~~ 144 (495)
T 3dsk_A 103 KVEKKDLLTGTYMPST--ELTGGYRILSYLDPS-EPKHEKLKNLL 144 (495)
T ss_dssp TEECSSCTTSSSCCCG--GGGTTCCCGGGCCTT-SHHHHHHHHHH
T ss_pred cccccccccccCCCCc--cccCCCcceeeeCCC-chHHHHHHHHH
Confidence 1 11211111111 2331 1 13444455 99999999976
No 35
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.20 E-value=1.1e-11 Score=85.24 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=68.5
Q ss_pred CCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEe-CCcC-eEEEccHHHHHHHHHhcCcccCCCCChHHH-
Q 047568 25 SSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRL-GFVP-TLIVSSAKMAKETLKAHDLQFSGRPALVAT- 101 (128)
Q Consensus 25 ~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~-~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~- 101 (128)
.+..|+|+.+|+.++ . ..+++..+.+++ +|||++++.+ ++.+ .++++||+++++|+.+ ..|.+++.....
T Consensus 7 ~~~~~~~~~~p~~~~---~-~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~ 79 (406)
T 1s1f_A 7 SQAVPPVRDWPAVDL---P-GSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQV 79 (406)
T ss_dssp -CCSCCEEECCCCCC---C-TTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTB
T ss_pred hhhccCCCCCCCCcc---c-ccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCc
Confidence 345667776677666 2 578888998885 7999999986 5665 9999999999999975 357665433211
Q ss_pred ---HH-hhcCCcceEecCCChhhHhhhhhc
Q 047568 102 ---QR-LTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 102 ---~~-~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
.. ....+.++++++ |++|+++|+++
T Consensus 80 ~~~~~~~~~~~~~l~~~d-g~~h~~~R~~~ 108 (406)
T 1s1f_A 80 TRLAPHFIPARGAVGFLD-PPDHTRLRRSV 108 (406)
T ss_dssp CBSSSSCSSCTTSGGGCC-TTHHHHHHHHH
T ss_pred ccccccccccccccccCC-chHHHHHHHHH
Confidence 11 111367788877 99999999986
No 36
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.20 E-value=1e-11 Score=84.74 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=58.7
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCC----cCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHhhcCCcceEecCCChhh
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGF----VPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRLTYNGLDLVFSPYGAYW 120 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~----~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~w 120 (128)
..+++..+.++ ++|||++++.+++ .++++++||+++++|+. +...|++++...........+.+++..+ |++|
T Consensus 11 ~~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~-g~~~ 87 (384)
T 3oo3_A 11 RLDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAILA-DHERFSSMRPVDDEADRALLPGILQAYD-PPDH 87 (384)
T ss_dssp TTEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHHH-CTTTEECSCCCC-----CCCTTCGGGCC-TTHH
T ss_pred ccChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHHh-CchhccCCccccccccccccccccccCC-ChhH
Confidence 57899999999 5999999998876 89999999999999994 4567877765432222122345556666 9999
Q ss_pred Hhhhhhc
Q 047568 121 REIRKIC 127 (128)
Q Consensus 121 k~~R~~l 127 (128)
+++|+++
T Consensus 88 ~~~R~~~ 94 (384)
T 3oo3_A 88 TRLRRTV 94 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999976
No 37
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.18 E-value=1.2e-11 Score=85.24 Aligned_cols=91 Identities=13% Similarity=0.024 Sum_probs=63.5
Q ss_pred hhccCCCCCCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCCh
Q 047568 19 ITSSYASSLPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPAL 98 (128)
Q Consensus 19 ~~~~~~~~~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~ 98 (128)
+...++...+|||+. ..+++..+.++++ |||+ +.++.+.++++|++.+++++.++ +.|++++..
T Consensus 12 r~~~~pl~~~PGp~~-----------~~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~~ 75 (411)
T 2jjn_A 12 RRTLTTIDEVPGMAD-----------ETALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPTR 75 (411)
T ss_dssp -----CCCSCCCSSC-----------HHHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGGG
T ss_pred hcccCCCCCCCCccc-----------ccChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCcccc
Confidence 346677788888871 3567888888876 9998 56767899999999999999764 467766532
Q ss_pred HHHHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 99 VATQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 99 ~~~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
.. ......+.++++.+ |++|+++|+++
T Consensus 76 ~~-~~~~~~~~~~~~~~-g~~~~~~R~~~ 102 (411)
T 2jjn_A 76 VI-EGASPTPGMIHEID-PPEHRALRKVV 102 (411)
T ss_dssp GS-TTCCCCTTCGGGCC-TTHHHHHHHHH
T ss_pred cC-CcccccccccccCC-chHHHHHHHHh
Confidence 21 11112356777776 99999999976
No 38
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.17 E-value=3.7e-11 Score=82.99 Aligned_cols=101 Identities=13% Similarity=0.053 Sum_probs=67.5
Q ss_pred ccCCCCCCCCCCCCcee--ccccCC----CCCCchHHHHHHHhhcC--CeEEEEeCCcCeEEEccHHHHHHHHHhcCccc
Q 047568 21 SSYASSLPPGPKGLPFI--GNLHQF----DASKPHVSFWELSKKYG--PLMSLRLGFVPTLIVSSAKMAKETLKAHDLQF 92 (128)
Q Consensus 21 ~~~~~~~~pgp~~~~~~--G~~~~~----~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~ 92 (128)
+..+.+.+|+|+..|.. +.+-.+ ...+++..+.+++ +|| +++++...+ +.++++|++++++++.+ .+.|
T Consensus 6 ~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g-~~vvv~~~~~v~~vl~~-~~~f 82 (415)
T 2zwu_A 6 IQSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG-GHWIATRGQLIREAYED-YRHF 82 (415)
T ss_dssp -----CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG-CEEEECSHHHHHHHHHC-TTTE
T ss_pred ccCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC-CeEEEcCHHHHHHHHcC-cccc
Confidence 34556678888887754 432211 1346788888885 799 999988323 79999999999999964 4567
Q ss_pred CCCC-ChHHHHHhhcCCcc-eEecCCChhhHhhhhhc
Q 047568 93 SGRP-ALVATQRLTYNGLD-LVFSPYGAYWREIRKIC 127 (128)
Q Consensus 93 ~~~~-~~~~~~~~~~~~~~-l~~~~~g~~wk~~R~~l 127 (128)
++++ ......... +.+ +++.+ |++|+++|+++
T Consensus 83 ~~~~~~~~~~~~~~--~~~~l~~~~-g~~~~~~R~~~ 116 (415)
T 2zwu_A 83 SSECPFIPREAGEA--YDFIPTSMD-PPEQRQFRALA 116 (415)
T ss_dssp ETTSCSSSHHHHHH--CCCTTTTCC-TTTTHHHHHHH
T ss_pred CCCcccCCCCcccc--ccccCccCC-CcHHHHHHHHH
Confidence 7765 222222222 566 77776 99999999976
No 39
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.15 E-value=2.9e-11 Score=83.88 Aligned_cols=98 Identities=17% Similarity=0.129 Sum_probs=66.8
Q ss_pred CCCCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEE--------eCCcCeEEEccHHHHHHHHHhcCcccCCCCCh
Q 047568 27 LPPGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLR--------LGFVPTLIVSSAKMAKETLKAHDLQFSGRPAL 98 (128)
Q Consensus 27 ~~pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~ 98 (128)
.|+.|....+++.-... ..+++..+.++ ++|||++++. +|+.+.++++|++++++|+.+. ..|++++..
T Consensus 19 ~p~~~~~~~~~~~~~~~-~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~-~~fs~~~~~ 95 (433)
T 3ivy_A 19 SPNLPPGFDFTDPAIYA-ERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHS-DVFSSYENG 95 (433)
T ss_dssp -CCCCTTCCTTCHHHHT-TCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCT-TTEESTTTC
T ss_pred CCCCCCCCCCCCHHHhh-cCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcCh-hhccCCccc
Confidence 34445445444433221 35789999999 7899999998 4447899999999999999654 557665532
Q ss_pred HHH--------HHhhcCCcceEecCCChhhHhhhhhcC
Q 047568 99 VAT--------QRLTYNGLDLVFSPYGAYWREIRKICV 128 (128)
Q Consensus 99 ~~~--------~~~~~~~~~l~~~~~g~~wk~~R~~l~ 128 (128)
... ......+.++++.+ |++|+++|++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~d-g~~h~~~R~~~~ 132 (433)
T 3ivy_A 96 VIPRFKNDIAREDIEVQRFVMLNMD-APHHTRLRKIIS 132 (433)
T ss_dssp SCCCCCTTCCHHHHHGGGGSGGGCC-TTHHHHHHHHHG
T ss_pred ccccccccccccccccccCCccccC-hHHHHHHHHHHH
Confidence 211 11222367788777 999999999863
No 40
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.14 E-value=5.6e-11 Score=81.58 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=61.5
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCCh------HHHHHhhcCCcceEecCCCh
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPAL------VATQRLTYNGLDLVFSPYGA 118 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~g~ 118 (128)
..+++..+.++ ++|||++++..++.+.++++|++.+++++.++ +.|++++.. ....... +.++++.+ |+
T Consensus 12 ~~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~-g~ 86 (404)
T 3ejb_B 12 LKNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQ--NQMMLFQN-QP 86 (404)
T ss_dssp HHCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHH--HTSGGGCC-TT
T ss_pred ccCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhh--hcchhhcC-Cc
Confidence 35788888888 58999999999999999999999999999876 567666531 1112222 57787777 99
Q ss_pred hhHhhhhhc
Q 047568 119 YWREIRKIC 127 (128)
Q Consensus 119 ~wk~~R~~l 127 (128)
+|+++|+++
T Consensus 87 ~h~~~Rr~~ 95 (404)
T 3ejb_B 87 DHRRLRTLA 95 (404)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999999986
No 41
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.14 E-value=3.2e-11 Score=83.04 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=57.6
Q ss_pred CCCchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHhcCcccCCCCC---hHH---HHHh-hcCCcceEecCC
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKAHDLQFSGRPA---LVA---TQRL-TYNGLDLVFSPY 116 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~---~~~---~~~~-~~~~~~l~~~~~ 116 (128)
..+++..+.++ ++|||++++++ ++.+.++++||+.+++|+.++ .+.+++. ... .... ...+.++++.+
T Consensus 23 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 98 (408)
T 3abb_A 23 PYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDP--RLSSDWGHPDFPVVVRRTEDRGGLAFPLIGVD- 98 (408)
T ss_dssp TTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCT--TEECCTTSTTCCCCC---------CCTTTTCC-
T ss_pred ccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCC--CcccccccccccccccCCccccccccccccCC-
Confidence 57889999999 89999999997 788999999999999999754 2434332 110 1110 00134677776
Q ss_pred ChhhHhhhhhcC
Q 047568 117 GAYWREIRKICV 128 (128)
Q Consensus 117 g~~wk~~R~~l~ 128 (128)
|++|+++|++++
T Consensus 99 g~~h~~~R~~~~ 110 (408)
T 3abb_A 99 DPVHARQRRMLI 110 (408)
T ss_dssp TTHHHHHHHHHG
T ss_pred chHHHHHHHHhh
Confidence 999999999863
No 42
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.11 E-value=3.3e-11 Score=82.68 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCCchHHHHHHHhhc--CCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHhhcCCcceEecCCChhhHh
Q 047568 45 ASKPHVSFWELSKKY--GPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRLTYNGLDLVFSPYGAYWRE 122 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~--g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~wk~ 122 (128)
..+++..+.+++++| ||++++..++ +.++++||+.+++++. +.+.|.+++..........++.++++.+ |++|++
T Consensus 18 ~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~ 94 (398)
T 4fb2_A 18 DGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVIQ-NTKAFSNKGVTFPRYETGEFELMMAGQD-DPVHKK 94 (398)
T ss_dssp TSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHHT-CCSSEEGGGCSSSCC----CCCTTTTCC-TTHHHH
T ss_pred hcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHHh-ChhhccCCcccccCCCCcccccCcccCC-chHHHH
Confidence 578999999999999 9999998875 6999999999999994 4556766654332111121344556666 999999
Q ss_pred hhhhc
Q 047568 123 IRKIC 127 (128)
Q Consensus 123 ~R~~l 127 (128)
+|+++
T Consensus 95 ~R~~~ 99 (398)
T 4fb2_A 95 YRQLV 99 (398)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99976
No 43
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.10 E-value=8.5e-11 Score=80.81 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=61.0
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCCh--H----------HH-HHh-hcCCcc
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPAL--V----------AT-QRL-TYNGLD 110 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~--~----------~~-~~~-~~~~~~ 110 (128)
..+++..+.++ ++|||++++++++.+.++++||+.+++++.++ .|++++.. . .. ... ...+.+
T Consensus 13 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (404)
T 1z8o_A 13 HVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFATN 89 (404)
T ss_dssp TSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSSS
T ss_pred ccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhcccc
Confidence 46889999999 99999999999989999999999999999765 56665432 1 11 111 002677
Q ss_pred eEecCCChhhHhhhhhc
Q 047568 111 LVFSPYGAYWREIRKIC 127 (128)
Q Consensus 111 l~~~~~g~~wk~~R~~l 127 (128)
+++.+ |++|+++|+++
T Consensus 90 l~~~~-g~~h~~~R~~~ 105 (404)
T 1z8o_A 90 MGTSD-PPTHTRLRKLV 105 (404)
T ss_dssp GGGCC-TTHHHHHHHHH
T ss_pred cccCC-CcHHHHHHHHH
Confidence 87776 99999999976
No 44
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.09 E-value=5.3e-11 Score=82.09 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=61.0
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHH---H-Hhhc-CCcceEecCCChh
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVAT---Q-RLTY-NGLDLVFSPYGAY 119 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~---~-~~~~-~~~~l~~~~~g~~ 119 (128)
..+++..+.++ ++|||++++++++.+.++++||+.+++++.++ . |++++..... . .... .+.++++.+ |++
T Consensus 19 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~-f~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~ 94 (411)
T 3a4g_A 19 WQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDP-R-LSKDWRHTLPEDQRADMPATPTPMMILMD-PPD 94 (411)
T ss_dssp TTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCT-T-EESCGGGGSCGGGCTTCCSCSSCCGGGCC-TTH
T ss_pred hcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCC-C-cccccccccccccccccCcccccccccCC-chH
Confidence 56889999999 89999999999989999999999999999765 3 7666532210 0 1111 366777776 999
Q ss_pred hHhhhhhc
Q 047568 120 WREIRKIC 127 (128)
Q Consensus 120 wk~~R~~l 127 (128)
|+++|+++
T Consensus 95 h~~~R~~~ 102 (411)
T 3a4g_A 95 HTRLRKLV 102 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999986
No 45
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.05 E-value=7.1e-11 Score=81.65 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=59.4
Q ss_pred CCCchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHhcCcccCCCCCh-HH---HHHhhcCCcceEecCCChh
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKAHDLQFSGRPAL-VA---TQRLTYNGLDLVFSPYGAY 119 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~-~~---~~~~~~~~~~l~~~~~g~~ 119 (128)
..+++..+.++ ++|||++++++ ++.+.++++||+.+++|+.++ .|.+++.. .. .... ..+.++++.+ |++
T Consensus 36 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~-~~~~~l~~~d-g~~ 110 (417)
T 2y5n_A 36 GLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPE-MVKGGLLSMD-PPE 110 (417)
T ss_dssp SCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSS-CCCCSGGGCC-TTH
T ss_pred ccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcc-cccccCccCC-chH
Confidence 56889999999 89999999997 789999999999999999764 36554322 11 1111 1356777776 999
Q ss_pred hHhhhhhc
Q 047568 120 WREIRKIC 127 (128)
Q Consensus 120 wk~~R~~l 127 (128)
|+++|+++
T Consensus 111 h~~~R~~l 118 (417)
T 2y5n_A 111 HSRLRRLV 118 (417)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999976
No 46
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.05 E-value=1.2e-10 Score=80.08 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=59.4
Q ss_pred CCCchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHhcCcccCCCCC--h-HH---HHHhhcCCcceEecCCC
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKAHDLQFSGRPA--L-VA---TQRLTYNGLDLVFSPYG 117 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~--~-~~---~~~~~~~~~~l~~~~~g 117 (128)
..+++..+.++ ++|||++++++ ++.+.++++||+++++|+.++ .|.+++. . .. .... ..+.++++.+ |
T Consensus 18 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~-~~~~~l~~~~-g 92 (403)
T 3aba_A 18 PFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQK-PGRGSLLWQD-E 92 (403)
T ss_dssp TTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCC-CCTTCCTTCC-T
T ss_pred ccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccc-ccccccccCC-c
Confidence 56788899999 89999999997 788999999999999999764 4655532 1 11 1111 1356777776 9
Q ss_pred hhhHhhhhhc
Q 047568 118 AYWREIRKIC 127 (128)
Q Consensus 118 ~~wk~~R~~l 127 (128)
+.|+++|+++
T Consensus 93 ~~h~~~R~~~ 102 (403)
T 3aba_A 93 PEHTSDRKLL 102 (403)
T ss_dssp THHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 9999999986
No 47
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.05 E-value=6.6e-11 Score=81.92 Aligned_cols=89 Identities=13% Similarity=0.024 Sum_probs=64.0
Q ss_pred eeccccCCC---C-CCchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHhcCcccCCCCC-hHH---HH-H-h
Q 047568 36 FIGNLHQFD---A-SKPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKAHDLQFSGRPA-LVA---TQ-R-L 104 (128)
Q Consensus 36 ~~G~~~~~~---~-~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~-~~~---~~-~-~ 104 (128)
++|++.+.. . .+++..+.++++ |||+++++. ++.+.++++|++.+++++.+. +.|++++. ... .. . +
T Consensus 11 ~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~~~~~~~~~~~~~~ 88 (428)
T 1cpt_A 11 IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEGSEILYDQNNEAFM 88 (428)
T ss_dssp HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHH
T ss_pred hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCccccccCCcccccchh
Confidence 888865542 1 357788888876 689999987 678999999999999999654 56776654 211 11 1 2
Q ss_pred ---hc----CCcceEecCCChhhHhhhhhc
Q 047568 105 ---TY----NGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 105 ---~~----~~~~l~~~~~g~~wk~~R~~l 127 (128)
.+ .+.++++++ |++|+++|+++
T Consensus 89 ~~~~g~~~~~~~~l~~~~-g~~~~~~Rr~~ 117 (428)
T 1cpt_A 89 RSISGGCPHVIDSLTSMD-PPTHTAYRGLT 117 (428)
T ss_dssp HHHTTTSSCSSCCGGGCC-TTHHHHHHHHH
T ss_pred ccccccccccccccccCC-hHHHHHHHHHh
Confidence 21 135677777 99999999976
No 48
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.00 E-value=5.3e-10 Score=77.25 Aligned_cols=80 Identities=14% Similarity=0.051 Sum_probs=58.4
Q ss_pred CCCchHHHHHHHhhcC-CeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHhhcCCcceEecCCChhhHhh
Q 047568 45 ASKPHVSFWELSKKYG-PLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRLTYNGLDLVFSPYGAYWREI 123 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~wk~~ 123 (128)
..+++..+.++++++| |++++..++ +.++++||+.+++|+. +.+.|++++...........+.++++.+ |++|+++
T Consensus 37 ~~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~~~~~~~d-g~~h~~~ 113 (421)
T 3lxh_A 37 EQGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYR-SPERFSSRVIWVPREAGEAYDMVPTKLD-PPEHTPY 113 (421)
T ss_dssp GGCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHT-CTTTEETTCCSSSHHHHHHCCCTTTTCC-TTTHHHH
T ss_pred hcChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHc-ChhhccCCcccCCcccccccccCCccCC-cHHHHHH
Confidence 3578899999988766 899987665 5899999999999995 4456776663221111111356677777 9999999
Q ss_pred hhhc
Q 047568 124 RKIC 127 (128)
Q Consensus 124 R~~l 127 (128)
|+++
T Consensus 114 R~~~ 117 (421)
T 3lxh_A 114 RKAI 117 (421)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
No 49
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=98.98 E-value=3e-10 Score=78.22 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=58.5
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHH---HH-----hh--cCCcceEec
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVAT---QR-----LT--YNGLDLVFS 114 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~---~~-----~~--~~~~~l~~~ 114 (128)
..+++..+.++ ++|||++++++++.+.++++||+++++|+.++. +++++..... .. +. ..+.++++.
T Consensus 14 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (408)
T 1odo_A 14 GADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENMFTA 90 (408)
T ss_dssp CTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSGGGC
T ss_pred cCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--ccccccccccccccccccccccccccccccccc
Confidence 57899999999 999999999988889999999999999997542 3333210000 00 00 014567777
Q ss_pred CCChhhHhhhhhcC
Q 047568 115 PYGAYWREIRKICV 128 (128)
Q Consensus 115 ~~g~~wk~~R~~l~ 128 (128)
+ |++|+++|++++
T Consensus 91 ~-g~~h~~~R~~~~ 103 (408)
T 1odo_A 91 Y-GPNHRKLRRLVA 103 (408)
T ss_dssp C-HHHHHHHHHTTG
T ss_pred C-ChHHHHHHHHhh
Confidence 6 999999999863
No 50
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=98.96 E-value=3.2e-10 Score=78.27 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=60.7
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeC-CcCeEEEccHHHHHHHHHhcCcccCCCCCh---HHHHHhh----cCCcceEecCC
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLG-FVPTLIVSSAKMAKETLKAHDLQFSGRPAL---VATQRLT----YNGLDLVFSPY 116 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~---~~~~~~~----~~~~~l~~~~~ 116 (128)
..+++..+.+++++ ||++++.++ +.+.++++|++++++++.++ .|++++.. ....... ..+.++++.+
T Consensus 28 ~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d- 103 (417)
T 3tyw_A 28 PFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFIRTD- 103 (417)
T ss_dssp TTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGGGCC-
T ss_pred ccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchhhcC-
Confidence 57899999999998 999999986 58999999999999999765 56554321 1111100 1356788877
Q ss_pred ChhhHhhhhhcC
Q 047568 117 GAYWREIRKICV 128 (128)
Q Consensus 117 g~~wk~~R~~l~ 128 (128)
|++|+++|++++
T Consensus 104 g~~h~~~R~~~~ 115 (417)
T 3tyw_A 104 APEHTRYRRMLL 115 (417)
T ss_dssp HHHHHHHHHHHG
T ss_pred CcHHHHHHHHHH
Confidence 999999999863
No 51
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=98.96 E-value=2.9e-10 Score=78.29 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=59.7
Q ss_pred CCCchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHhcCcccCCCCChHH-HHHhhcCCcc--eEecCCC---
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKAHDLQFSGRPALVA-TQRLTYNGLD--LVFSPYG--- 117 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~-~~~~~~~~~~--l~~~~~g--- 117 (128)
..+++..+.++ ++|||++++++ ++.+.++++||+++++|+.++ .|.+++.... ..... .+.+ +++++ |
T Consensus 25 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~-~~~~~~l~~~~-g~~~ 99 (404)
T 2xbk_A 25 MLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYV-RSPFLDLLISD-ADAE 99 (404)
T ss_dssp TTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSS-CCHHHHTTCBC-SCHH
T ss_pred ccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCccc-ccccccceeeC-CCCC
Confidence 46788999999 89999999997 788999999999999999764 3655543321 11111 2455 77776 9
Q ss_pred ---hhhHhhhhhcC
Q 047568 118 ---AYWREIRKICV 128 (128)
Q Consensus 118 ---~~wk~~R~~l~ 128 (128)
++|+++|++++
T Consensus 100 ~~~~~h~~~R~~~~ 113 (404)
T 2xbk_A 100 SGRRQHAETRRLLT 113 (404)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred CCCchHHHHHHHhh
Confidence 99999999863
No 52
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=98.96 E-value=3.4e-10 Score=78.11 Aligned_cols=79 Identities=18% Similarity=0.142 Sum_probs=59.2
Q ss_pred CCCchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHhcCcccCCCCChHH------HHHhhc---CCcc-eEe
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKAHDLQFSGRPALVA------TQRLTY---NGLD-LVF 113 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~------~~~~~~---~~~~-l~~ 113 (128)
..+++..+.++. +|||++++++ ++.+.++++||+++++++.++ .|.+++.... ...... .+.+ +++
T Consensus 21 ~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 97 (413)
T 2z36_A 21 PFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLDAATLQQLRSQPPLMLG 97 (413)
T ss_dssp TTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCCHHHHHHHTTSCCCGGG
T ss_pred ccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCccccccccccccccccccccccc
Confidence 568899999997 7899999997 788999999999999999763 4666542211 111110 2567 777
Q ss_pred cCCChhhHhhhhhc
Q 047568 114 SPYGAYWREIRKIC 127 (128)
Q Consensus 114 ~~~g~~wk~~R~~l 127 (128)
.+ |++|+++|+++
T Consensus 98 ~~-g~~h~~~R~~~ 110 (413)
T 2z36_A 98 MD-GAEHSAARRPV 110 (413)
T ss_dssp CC-HHHHHHHHHHH
T ss_pred cC-chHHHHHHHHH
Confidence 76 99999999976
No 53
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=98.95 E-value=2.5e-10 Score=78.19 Aligned_cols=79 Identities=11% Similarity=-0.008 Sum_probs=58.6
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHhhcCCcceEecCCChhhHhhh
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRLTYNGLDLVFSPYGAYWREIR 124 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~wk~~R 124 (128)
..+++..+.+++++ ||++++..+ .+.++++||+.+++++.+. +.|++++...........+.++++.+ |++|+++|
T Consensus 23 ~~~p~~~~~~l~~~-Gpv~~~~~~-~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~-g~~h~~~R 98 (396)
T 3oft_A 23 EQDYFAAWKTLLDG-PGLVWSTAN-GGHWIAARGDVVRELWGDA-ERLSSQCLAVTPGLGKVMQFIPLQQD-GAEHKAFR 98 (396)
T ss_dssp TTCHHHHHHGGGGS-CSEEEECST-TSEEEECSHHHHHHHHHCT-TTEESTTCCSSTTHHHHHCCTTTTCC-HHHHHHHH
T ss_pred hcChHHHHHHHHhc-CCeeeecCC-CCEEEEcCHHHHHHHHcCc-ccccCCcccCCCccccccccCccccC-CcHHHHHH
Confidence 57899999999999 999998877 4589999999999999654 56766653211111111245667676 99999999
Q ss_pred hhc
Q 047568 125 KIC 127 (128)
Q Consensus 125 ~~l 127 (128)
+++
T Consensus 99 ~~~ 101 (396)
T 3oft_A 99 TPV 101 (396)
T ss_dssp HHH
T ss_pred HHh
Confidence 986
No 54
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=98.94 E-value=2e-10 Score=80.03 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=66.0
Q ss_pred ccCCCCCCCCCCCCceeccccCCC----CC-CchHHHHHHHhhcCC-eEEEEeCCcC-------eEEEccHHHHHHHHHh
Q 047568 21 SSYASSLPPGPKGLPFIGNLHQFD----AS-KPHVSFWELSKKYGP-LMSLRLGFVP-------TLIVSSAKMAKETLKA 87 (128)
Q Consensus 21 ~~~~~~~~pgp~~~~~~G~~~~~~----~~-~~~~~~~~~~~~~g~-~~~~~~~~~~-------~v~v~dp~~~~~vl~~ 87 (128)
...+.+.+|||.++|++|++..+. .. +++.++.++.++||+ ++++++++.+ .|.++|++..+.++..
T Consensus 4 ~~~Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~ 83 (473)
T 3dan_A 4 SSKPLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDV 83 (473)
T ss_dssp GGSCBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCT
T ss_pred CCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCC
Confidence 345677899999999999987642 34 789999999999999 9999986443 3444555544444421
Q ss_pred ----cCcccCCCCChHHHHHhhcC--CcceEecCCChhhHhhhhhc
Q 047568 88 ----HDLQFSGRPALVATQRLTYN--GLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 88 ----~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~g~~wk~~R~~l 127 (128)
+...+........ ...++ ..+++..+ |+.|+++|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~-~~~h~~~R~~~ 126 (473)
T 3dan_A 84 SKVEKKDLFTGTYMPST--KLTGGYRVLSYLDPS-EPRHAQLKNLL 126 (473)
T ss_dssp TTEECSSCTTSSSCCCG--GGGTTSCCGGGCCTT-SHHHHHHHHHH
T ss_pred cceeccccccccccCCc--cccCCCcceeeeCCC-cHHHHHHHHHH
Confidence 1111211111111 22211 23455565 99999999976
No 55
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=98.93 E-value=1.1e-09 Score=75.83 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=57.8
Q ss_pred CCchHHHHHHHhhcCCeEEEEeC--CcCeEEEccHHHHHHHHHhcCcccCCCCCh--------H-H-------HHHhhcC
Q 047568 46 SKPHVSFWELSKKYGPLMSLRLG--FVPTLIVSSAKMAKETLKAHDLQFSGRPAL--------V-A-------TQRLTYN 107 (128)
Q Consensus 46 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~--------~-~-------~~~~~~~ 107 (128)
.+++..+.+++ +|||+++++++ +.+.++++||+.+++|+.++ .|++++.. . . .... .
T Consensus 20 ~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 94 (425)
T 2z3t_A 20 ADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTV--V 94 (425)
T ss_dssp HCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHH--H
T ss_pred cChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccccccc--c
Confidence 56788888886 59999999887 77899999999999999764 57666531 1 1 1122 2
Q ss_pred CcceEecCCChhhHhhhhhc
Q 047568 108 GLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 108 ~~~l~~~~~g~~wk~~R~~l 127 (128)
+.++++++ |++|+++|+++
T Consensus 95 ~~~l~~~d-g~~h~~~R~~~ 113 (425)
T 2z3t_A 95 ENWLVFLD-PPHHTELRSLL 113 (425)
T ss_dssp TTCGGGCC-HHHHHHHHHHH
T ss_pred ccccccCC-chHHHHHHHHH
Confidence 47788887 99999999976
No 56
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=98.93 E-value=3.1e-10 Score=78.84 Aligned_cols=79 Identities=13% Similarity=0.011 Sum_probs=58.5
Q ss_pred CCchHHHHHHHhhcCCeEEEEeC-------CcCeEEEccHHHHHHHHHhcCcccCCCCCh--H-HHHHhhcCCcceEecC
Q 047568 46 SKPHVSFWELSKKYGPLMSLRLG-------FVPTLIVSSAKMAKETLKAHDLQFSGRPAL--V-ATQRLTYNGLDLVFSP 115 (128)
Q Consensus 46 ~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~ 115 (128)
.+++..+.+++ +|||++++..+ +.+.++++||+.+++|+.++ +.|++++.. . ....+...+.++++++
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~d 121 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIVLD 121 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGGCC
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccccccCC
Confidence 46778888885 68999999875 66899999999999999864 467776531 1 1111111256788777
Q ss_pred CChhhHhhhhhc
Q 047568 116 YGAYWREIRKIC 127 (128)
Q Consensus 116 ~g~~wk~~R~~l 127 (128)
|++|+++|+++
T Consensus 122 -g~~h~~~R~~l 132 (435)
T 2wm5_A 122 -DPRHQRLRSIV 132 (435)
T ss_dssp -TTHHHHHHHHH
T ss_pred -cHHHHHHHHHh
Confidence 99999999976
No 57
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=98.92 E-value=1.3e-09 Score=75.18 Aligned_cols=80 Identities=25% Similarity=0.264 Sum_probs=58.6
Q ss_pred CCCchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHhcCcccCCCCC-hHHHH--------Hhh--cC-Ccce
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKAHDLQFSGRPA-LVATQ--------RLT--YN-GLDL 111 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~-~~~~~--------~~~--~~-~~~l 111 (128)
..+++..+.++ ++|||++++++ ++.+.++++||+++++++.++. +.+++. ..... .+. .. +.++
T Consensus 16 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (411)
T 1gwi_A 16 VTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGRSM 92 (411)
T ss_dssp CSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCSSG
T ss_pred cCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhcccccc
Confidence 56889999999 99999999997 7889999999999999997643 444331 11100 000 02 4567
Q ss_pred EecCCChhhHhhhhhcC
Q 047568 112 VFSPYGAYWREIRKICV 128 (128)
Q Consensus 112 ~~~~~g~~wk~~R~~l~ 128 (128)
++.+ |++|+++|++++
T Consensus 93 ~~~~-g~~h~~~R~~~~ 108 (411)
T 1gwi_A 93 LTVD-GAEHRRLRTLVA 108 (411)
T ss_dssp GGCC-HHHHHHHHHHHT
T ss_pred ccCC-cHHHHHHHHHHH
Confidence 7766 999999999864
No 58
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=98.91 E-value=6e-10 Score=76.88 Aligned_cols=80 Identities=15% Similarity=0.099 Sum_probs=58.1
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCC--cCeEEEccHHHHHHHHHhcCcccCCCCChHH----HHHhhcC-CcceEecCCC
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGF--VPTLIVSSAKMAKETLKAHDLQFSGRPALVA----TQRLTYN-GLDLVFSPYG 117 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~----~~~~~~~-~~~l~~~~~g 117 (128)
+++++..+.+++ +|||++++.+++ .+.++++||+.+++|+.+ ..|.+++.... ....... +.++++.+ |
T Consensus 26 g~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~d-g 101 (411)
T 2dkk_A 26 GPEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHFKPRPGSLAFAD-Q 101 (411)
T ss_dssp SSCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCCCCCTTCSTTCC-T
T ss_pred cccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccchhccccccccCC-c
Confidence 466778888887 899999998764 789999999999999965 35655433210 1111111 56777776 9
Q ss_pred hhhHhhhhhcC
Q 047568 118 AYWREIRKICV 128 (128)
Q Consensus 118 ~~wk~~R~~l~ 128 (128)
++|+++|++++
T Consensus 102 ~~h~~~R~~~~ 112 (411)
T 2dkk_A 102 PDHNRLRRAVA 112 (411)
T ss_dssp THHHHHHHHHG
T ss_pred hHHHHHHHHhh
Confidence 99999999863
No 59
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=98.85 E-value=1.1e-09 Score=75.65 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=58.3
Q ss_pred CCCchHHHHHHHhhcCCeE-----EEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChH--HH-HHh-h-cCCcceEec
Q 047568 45 ASKPHVSFWELSKKYGPLM-----SLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALV--AT-QRL-T-YNGLDLVFS 114 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~--~~-~~~-~-~~~~~l~~~ 114 (128)
..+++..+.++. +|||++ ++.+ .+.++++||+++++++.++ ..|++++... .. ..+ . ..+.+++++
T Consensus 24 ~~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (414)
T 2uuq_A 24 WPNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVMQ 99 (414)
T ss_dssp TTCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGGC
T ss_pred ccCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccccccC
Confidence 367888888885 789998 7665 6899999999999999875 5677765432 11 122 1 236778888
Q ss_pred CCChhhHhhhhhc
Q 047568 115 PYGAYWREIRKIC 127 (128)
Q Consensus 115 ~~g~~wk~~R~~l 127 (128)
+ |++|+++|+++
T Consensus 100 ~-g~~h~~~R~~~ 111 (414)
T 2uuq_A 100 D-PPVHTEFRKLV 111 (414)
T ss_dssp C-TTHHHHHHHHH
T ss_pred C-chhHHHHHHHh
Confidence 6 99999999976
No 60
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=98.85 E-value=2.5e-09 Score=73.65 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=56.2
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHhh--------cCCcceEecCC
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRLT--------YNGLDLVFSPY 116 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~ 116 (128)
..+++..+.++ ++|||++++.++ .++++|++.+++|+.+. ..+++++......... ..+.++++++
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d- 101 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTKSTIFQRQLAAETQPRPQGPASFLFLD- 101 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGGCHHHHHHHC---------CCCGGGCC-
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCcccccccccccccccccccccccchhhcC-
Confidence 57899999888 578999987665 89999999999999653 4445554332222211 1356788887
Q ss_pred ChhhHhhhhhc
Q 047568 117 GAYWREIRKIC 127 (128)
Q Consensus 117 g~~wk~~R~~l 127 (128)
|++|+++|+++
T Consensus 102 g~~h~~~R~~~ 112 (418)
T 3r9b_A 102 PPDHTRLRGLV 112 (418)
T ss_dssp TTHHHHHHHHH
T ss_pred CchHHHHHHHh
Confidence 99999999986
No 61
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=98.85 E-value=9e-10 Score=76.08 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=57.5
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCC-----hH-H--HHHhhcC-CcceEecC
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPA-----LV-A--TQRLTYN-GLDLVFSP 115 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~-----~~-~--~~~~~~~-~~~l~~~~ 115 (128)
..+++..+.++ ++|||+++ + ++.+.++++||+++++|+.++ . |++++. .. . ...+... +.++++.+
T Consensus 25 ~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~-~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (419)
T 1q5d_A 25 AEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDE-R-FAVSREEWESSAEYSSAIPELSDMKKYGLFGLP 99 (419)
T ss_dssp TTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCT-T-EECCGGGSTTHHHHHHSSGGGHHHHHHSTTTSC
T ss_pred hhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCC-C-ccccccccccccccccccchhhhhcccccccCC
Confidence 46789999998 78999998 5 778999999999999999765 3 877751 11 1 0111101 45677776
Q ss_pred CChhhHhhhhhcC
Q 047568 116 YGAYWREIRKICV 128 (128)
Q Consensus 116 ~g~~wk~~R~~l~ 128 (128)
|++|+++|++++
T Consensus 100 -g~~h~~~R~~~~ 111 (419)
T 1q5d_A 100 -PEDHARVRKLVN 111 (419)
T ss_dssp -HHHHHHHHHHHG
T ss_pred -chHHHHHHHHHH
Confidence 999999999863
No 62
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=98.83 E-value=1.3e-09 Score=74.71 Aligned_cols=75 Identities=9% Similarity=0.008 Sum_probs=56.4
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHhhcCCcceEecCCChhhHhhh
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRLTYNGLDLVFSPYGAYWREIR 124 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~wk~~R 124 (128)
..+++..+.++++ |||++++. . +.++++||+++++++.++ +.|++++... .... .+.++++.+ |++|+++|
T Consensus 17 ~~~p~~~~~~l~~-~Gpv~~~~--~-~~vvv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~--~~~~l~~~~-g~~h~~~R 87 (398)
T 2xkr_A 17 SREARAAYRWMRA-NQPVFRDR--N-GLAAASTYQAVIDAERQP-ELFSNAGGIR-PDQP--ALPMMIDMD-DPAHLLRR 87 (398)
T ss_dssp CTTHHHHHHHHHH-HCSEEECT--T-CCEEECSHHHHHHHHTCT-TTEESTTCSS-TTSC--CCSSGGGCC-TTHHHHHH
T ss_pred ccChhHHHHHHHh-cCCeeecC--C-CeEEEecHHHHHHHHhCc-ccccCccccC-Cccc--ccccccccC-chHHHHHH
Confidence 4678889999987 99998654 3 799999999999999764 3576665422 1112 367777777 99999999
Q ss_pred hhcC
Q 047568 125 KICV 128 (128)
Q Consensus 125 ~~l~ 128 (128)
++++
T Consensus 88 ~~~~ 91 (398)
T 2xkr_A 88 KLVN 91 (398)
T ss_dssp HHHG
T ss_pred HHhh
Confidence 9763
No 63
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=98.79 E-value=2e-09 Score=74.93 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=45.5
Q ss_pred CCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHhhcCCcceEecCCChhhHhhhh
Q 047568 46 SKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRLTYNGLDLVFSPYGAYWREIRK 125 (128)
Q Consensus 46 ~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~wk~~R~ 125 (128)
.+++.++.++ ++|||++++..++ .++++||+.+++|+.++.. |++++......... ++.++++.+ |++|+++|+
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~~-f~~~~~~~~~~~~~-~~~~l~~~d-g~~h~~~Rr 126 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPDI-FTTKSLVERAEPVM-RGPVLAQMH-GKEHSAKRR 126 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTTT-EECCCTTSCCCCSC-C--------------CCHH
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCccc-cccccccccccccc-CCCccccCC-cHHHHHHHH
Confidence 5677777776 6899999876554 8999999999999977643 76665433322222 233577777 999999999
Q ss_pred hc
Q 047568 126 IC 127 (128)
Q Consensus 126 ~l 127 (128)
++
T Consensus 127 ~~ 128 (441)
T 3nc3_A 127 IV 128 (441)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 64
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=98.79 E-value=2.4e-09 Score=74.03 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=57.5
Q ss_pred CCchHHHHHHHhhcCCeEEEEeCC--cCeEEEccHHHHHHHHHhcCcccCCCCChHHHHH---hhcC-CcceEecCCChh
Q 047568 46 SKPHVSFWELSKKYGPLMSLRLGF--VPTLIVSSAKMAKETLKAHDLQFSGRPALVATQR---LTYN-GLDLVFSPYGAY 119 (128)
Q Consensus 46 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~---~~~~-~~~l~~~~~g~~ 119 (128)
.+++..+.++++ |||++++...+ .+.+++++++.+++++.+. +.|++++....... .... +.++++.+ |++
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~l~~~d-g~~ 113 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAPS-APLTSEYGMMIGFDRDHPDNSGGRMMVVSE-HEQ 113 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCTT-SSEECTTCSSTTCCSSSCCTTTTTSGGGCC-HHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhCh-hhhcCCccccccccccccccccCCCccccC-cHH
Confidence 578888988887 89999986344 7899999999999999543 45766654322111 1111 45577776 999
Q ss_pred hHhhhhhcC
Q 047568 120 WREIRKICV 128 (128)
Q Consensus 120 wk~~R~~l~ 128 (128)
|+++|++++
T Consensus 114 h~~~R~~~~ 122 (415)
T 3mgx_A 114 HRKLRKLVG 122 (415)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHhH
Confidence 999999863
No 65
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=98.78 E-value=1.4e-09 Score=75.90 Aligned_cols=77 Identities=18% Similarity=0.125 Sum_probs=56.6
Q ss_pred chHHHHHHHhhcCCeE--EEE-eCCcCeEEEccHHHHHHHHHhcCcccCCCCChHH----H-----HHhh----cCCcce
Q 047568 48 PHVSFWELSKKYGPLM--SLR-LGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVA----T-----QRLT----YNGLDL 111 (128)
Q Consensus 48 ~~~~~~~~~~~~g~~~--~~~-~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~----~-----~~~~----~~~~~l 111 (128)
++..+.++ ++|||++ ++. +++.+.+++++++++++++.+. ..|++++.... . .... ..++++
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 67777777 6789999 887 6778999999999999999665 66766654211 0 0111 023577
Q ss_pred EecCCChhhHhhhhhc
Q 047568 112 VFSPYGAYWREIRKIC 127 (128)
Q Consensus 112 ~~~~~g~~wk~~R~~l 127 (128)
++.+ |++|+++|+++
T Consensus 125 ~~~d-g~~h~~~R~~~ 139 (450)
T 3tkt_A 125 VQMD-APKHPKLRRLT 139 (450)
T ss_dssp GGCC-TTHHHHHHHHH
T ss_pred ccCC-CHHHHHHHHHh
Confidence 7777 99999999986
No 66
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=98.74 E-value=5.5e-09 Score=71.61 Aligned_cols=76 Identities=16% Similarity=0.070 Sum_probs=53.7
Q ss_pred CCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHH------HhhcC-CcceEecCCCh
Q 047568 46 SKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQ------RLTYN-GLDLVFSPYGA 118 (128)
Q Consensus 46 ~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~------~~~~~-~~~l~~~~~g~ 118 (128)
.+++..+.++ ++|||+++ . +.+.++++||+++++++.+ ..|.+++...... ..... +.++++.+ |+
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~ 85 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIILFQD-EP 85 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGGGCC-TT
T ss_pred cCchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccccCC-ch
Confidence 4677788776 58999998 5 5789999999999999975 3565543221100 11111 56787777 99
Q ss_pred hhHhhhhhcC
Q 047568 119 YWREIRKICV 128 (128)
Q Consensus 119 ~wk~~R~~l~ 128 (128)
+|+++|++++
T Consensus 86 ~h~~~R~~~~ 95 (397)
T 3buj_A 86 DHGRLRGVVG 95 (397)
T ss_dssp HHHHHHHHHG
T ss_pred hHHHHHHHHH
Confidence 9999999863
No 67
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=98.69 E-value=6.3e-09 Score=71.37 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=48.9
Q ss_pred hHHHHHHHhhcCCeEEEEeC-Cc---CeEEEccHHHHHHHHHhcCcccCCCCC------hH---HHHHhhcCCcceEecC
Q 047568 49 HVSFWELSKKYGPLMSLRLG-FV---PTLIVSSAKMAKETLKAHDLQFSGRPA------LV---ATQRLTYNGLDLVFSP 115 (128)
Q Consensus 49 ~~~~~~~~~~~g~~~~~~~~-~~---~~v~v~dp~~~~~vl~~~~~~~~~~~~------~~---~~~~~~~~~~~l~~~~ 115 (128)
+..+.+++++ ||++++.++ +. +.++++||+++++++..+ ..|.+++. .. .... ...+.++++++
T Consensus 16 ~~~~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 92 (398)
T 1lfk_A 16 LDPADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRP-RELVGNLMDYD 92 (398)
T ss_dssp TEECHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC--------------CCTTCGGGCC
T ss_pred CChhHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCcccccc-cccccCccccC
Confidence 3344557777 999998764 45 899999999999999333 34655543 11 1111 11356787777
Q ss_pred CChhhHhhhhhcC
Q 047568 116 YGAYWREIRKICV 128 (128)
Q Consensus 116 ~g~~wk~~R~~l~ 128 (128)
|++|+++|++++
T Consensus 93 -g~~~~~~R~~~~ 104 (398)
T 1lfk_A 93 -PPEHTRLRRKLT 104 (398)
T ss_dssp -TTHHHHHHHHHG
T ss_pred -CHHHHHHHHHHH
Confidence 999999999863
No 68
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=98.69 E-value=9.5e-09 Score=69.88 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=51.5
Q ss_pred hHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCC-hH-HH-----H-HhhcC---CcceEecCCC
Q 047568 49 HVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPA-LV-AT-----Q-RLTYN---GLDLVFSPYG 117 (128)
Q Consensus 49 ~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~-~~-~~-----~-~~~~~---~~~l~~~~~g 117 (128)
+..+.++ ++|||++++. + .++++||+.++++|.++ +.|++++. .. .. . .+. + +.++++++ |
T Consensus 2 ~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~d-g 73 (367)
T 3b4x_A 2 YDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFF-DIPTRYTMLTSD-P 73 (367)
T ss_dssp HHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCC-CCGGGSSGGGCC-T
T ss_pred CHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchh-hcccccccccCC-c
Confidence 4456666 5799999887 3 89999999999999865 46776642 21 11 1 222 2 27788887 9
Q ss_pred hhhHhhhhhcC
Q 047568 118 AYWREIRKICV 128 (128)
Q Consensus 118 ~~wk~~R~~l~ 128 (128)
++|+++|++++
T Consensus 74 ~~h~~~R~~~~ 84 (367)
T 3b4x_A 74 PLHDELRNLTA 84 (367)
T ss_dssp THHHHHHHTTG
T ss_pred hhHHHHHHHHH
Confidence 99999999863
No 69
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=98.68 E-value=1.9e-08 Score=68.39 Aligned_cols=73 Identities=21% Similarity=0.161 Sum_probs=51.4
Q ss_pred hHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCC--hHHHH-H---h--hc--CCcceEecCCCh
Q 047568 49 HVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPA--LVATQ-R---L--TY--NGLDLVFSPYGA 118 (128)
Q Consensus 49 ~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~--~~~~~-~---~--~~--~~~~l~~~~~g~ 118 (128)
+..+.++ ++|||++++ + +.++++|++.+++++.+. +.|++++. ..... . . .. .|.++++++ |+
T Consensus 2 ~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-g~ 74 (368)
T 1io7_A 2 YDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSD-PP 74 (368)
T ss_dssp HHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCC-TT
T ss_pred CHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-ccccccccccccccccccccccccccccccccccCC-Ch
Confidence 4556677 589999987 3 689999999999999864 46877764 11111 1 1 11 126677777 99
Q ss_pred hhHhhhhhcC
Q 047568 119 YWREIRKICV 128 (128)
Q Consensus 119 ~wk~~R~~l~ 128 (128)
+|+++|++++
T Consensus 75 ~h~~~R~~~~ 84 (368)
T 1io7_A 75 LHDELRSMSA 84 (368)
T ss_dssp HHHHHHGGGT
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 70
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=98.56 E-value=7.4e-09 Score=71.02 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=54.4
Q ss_pred CCCchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHhcCcccC-C-CCCh--HHHH--Hhhc-CCcceEecCC
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKAHDLQFS-G-RPAL--VATQ--RLTY-NGLDLVFSPY 116 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~~~~~~~-~-~~~~--~~~~--~~~~-~~~~l~~~~~ 116 (128)
..+++..+.++ ++|||++++.+ ++.+.++++||+++++++.++ .|. + ++.. .... .+.. .+.+++++
T Consensus 15 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 89 (396)
T 1n40_A 15 GDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI-- 89 (396)
T ss_dssp SSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH--
T ss_pred ccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH--
Confidence 56889999999 99999999997 788999999999999999764 354 3 3321 1000 0000 14556544
Q ss_pred ChhhHhhhhhc
Q 047568 117 GAYWREIRKIC 127 (128)
Q Consensus 117 g~~wk~~R~~l 127 (128)
+|+++|+++
T Consensus 90 --~h~~~R~~~ 98 (396)
T 1n40_A 90 --ADAGLRKAV 98 (396)
T ss_dssp --HHTTCHHHH
T ss_pred --HHHHHHHHH
Confidence 899999976
No 71
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=98.50 E-value=1.4e-07 Score=65.36 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=56.3
Q ss_pred CCchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHhcCcccCCCCC---hHHH------HHhhcCCcceEecC
Q 047568 46 SKPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKAHDLQFSGRPA---LVAT------QRLTYNGLDLVFSP 115 (128)
Q Consensus 46 ~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~---~~~~------~~~~~~~~~l~~~~ 115 (128)
.+++..+.+++++ ||++++.. ++.+.+++++++.+++++.+. ..|++++. .... ......+.+++..+
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 115 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAMD 115 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCGGGCC
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCcccccC
Confidence 5688889999877 99999876 456899999999999999765 44655431 0000 00111345677777
Q ss_pred CChhhHhhhhhcC
Q 047568 116 YGAYWREIRKICV 128 (128)
Q Consensus 116 ~g~~wk~~R~~l~ 128 (128)
|++|+++|++++
T Consensus 116 -g~~h~~~R~~~~ 127 (426)
T 3rwl_A 116 -RPRHDEQRKAVS 127 (426)
T ss_dssp -TTHHHHHHHHHG
T ss_pred -chHHHHHHHHhh
Confidence 999999999863
No 72
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=98.48 E-value=3.2e-08 Score=66.65 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=44.5
Q ss_pred hhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHhhcCCcceEecCCChhhHhhhhhc
Q 047568 57 KKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRLTYNGLDLVFSPYGAYWREIRKIC 127 (128)
Q Consensus 57 ~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~wk~~R~~l 127 (128)
++|||++++ + .++++||+++++++.++ +.|.+++....... .+.++++.+ |++|+++|+++
T Consensus 2 r~~gpv~~~---g--~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~---~~~~l~~~~-g~~~~~~R~~~ 62 (343)
T 2rfb_A 2 RLNDPVHYD---G--AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA---GGISFITMD-NPEHKEFRDIS 62 (343)
T ss_dssp -CCCCEEET---T--EEEECSHHHHHHHHHCT-TTEESSCSSCCC------CCGGGGCC-HHHHHHHHHHH
T ss_pred CCcCCeeee---C--eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc---cccccccCC-chHHHHHHHHh
Confidence 579999886 2 89999999999999865 46776652111111 267787776 99999999976
No 73
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=98.34 E-value=8.8e-08 Score=66.12 Aligned_cols=76 Identities=14% Similarity=-0.012 Sum_probs=52.4
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCC-hHH--------HHHhhcCCcceEecC
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPA-LVA--------TQRLTYNGLDLVFSP 115 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~-~~~--------~~~~~~~~~~l~~~~ 115 (128)
..+++.. ++.++|||++++.++... +++++++.+++|+.++. +..... ... .... .++++++++
T Consensus 32 ~~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~d 104 (416)
T 3p3o_A 32 PNFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKR--LISGFRGLVDMVGTPEGPVRDF--MVDFLQSLD 104 (416)
T ss_dssp TTCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTT--EECSHHHHHHHHTCCSSHHHHH--HHHSGGGCC
T ss_pred ccCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcc--cccCCccccccccccccchhhh--hcCccccCC
Confidence 4567777 555679999998887666 99999999999997653 322211 100 0111 146677777
Q ss_pred CChhhHhhhhhcC
Q 047568 116 YGAYWREIRKICV 128 (128)
Q Consensus 116 ~g~~wk~~R~~l~ 128 (128)
|++|+++|++++
T Consensus 105 -g~~h~~~Rr~~~ 116 (416)
T 3p3o_A 105 -GADHRRLRGLAT 116 (416)
T ss_dssp -HHHHHHHHHTTC
T ss_pred -chHHHHHHHHHH
Confidence 999999999874
No 74
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=98.09 E-value=8.4e-07 Score=60.80 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=50.0
Q ss_pred CCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHhhcCCcceEecCCChhhHhhhh
Q 047568 46 SKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRLTYNGLDLVFSPYGAYWREIRK 125 (128)
Q Consensus 46 ~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~wk~~R~ 125 (128)
.+++..+.+++++ ||++++..+ .+++++++.+++++.+. .|+.++...........++++++.+ |++|+++|+
T Consensus 20 ~dp~~~~~~lr~~-~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~~~~~l~~~d-g~~h~~~R~ 92 (394)
T 2wiy_A 20 NNPYPWYRRLQQD-HPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAVASDTALGSD-PPHHTVLRR 92 (394)
T ss_dssp HCCHHHHHHHHHH-CSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGGGGGSGGGCC-TTHHHHHHH
T ss_pred cCccHHHHHHHhc-CCeEEecCC---eEEEcCHHHHHHHHcCC--CccccccccccccchhcccccccCC-chHHHHHHH
Confidence 4678888888665 799876532 68899999999999543 4544321111111111246677676 999999999
Q ss_pred hc
Q 047568 126 IC 127 (128)
Q Consensus 126 ~l 127 (128)
++
T Consensus 93 ~~ 94 (394)
T 2wiy_A 93 QT 94 (394)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=97.93 E-value=9.2e-06 Score=56.02 Aligned_cols=78 Identities=13% Similarity=0.021 Sum_probs=51.0
Q ss_pred CCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCCh---HHHHHh-hcCCcceEecCCChhh
Q 047568 45 ASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPAL---VATQRL-TYNGLDLVFSPYGAYW 120 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~g~~w 120 (128)
..+++..++++++ +||+++ ......+++++.+.+++||.+. ..|++.... ...... ...+..++.++ |++|
T Consensus 33 ~~dP~~~~~~lR~-~gPV~~--~~~~~~~~vt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~D-g~~H 107 (412)
T 4dnj_A 33 FADPYPEQETLRE-AGPVVY--LDKWNVYGVARYAEVYAVLNDP-LTFCSSRGVGLSDFKKEKPWRPPSLILEAD-PPAH 107 (412)
T ss_dssp HHSCHHHHHHHHH-HCSSEE--ETTTTEEEECSHHHHHHHHTCT-TTEESTTCSSSSCTTTSCCSSCCCTTTTCC-TTHH
T ss_pred HhCcHHHHHHHHh-cCCEEE--ECCCCEEEECCHHHHHHHHcCC-ccccCCCccccccccccccccCCCccccCC-hHHH
Confidence 3678888888765 699875 4566789999999999999654 344332211 111111 11234456666 9999
Q ss_pred Hhhhhhc
Q 047568 121 REIRKIC 127 (128)
Q Consensus 121 k~~R~~l 127 (128)
+++|+++
T Consensus 108 ~r~R~~~ 114 (412)
T 4dnj_A 108 TRTRAVL 114 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9999986
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=97.22 E-value=0.00026 Score=48.97 Aligned_cols=81 Identities=11% Similarity=-0.006 Sum_probs=48.8
Q ss_pred CCCchHHHHHHHhhcC-CeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCChHHHHHhhcCCcceEecCCChhhHhh
Q 047568 45 ASKPHVSFWELSKKYG-PLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPALVATQRLTYNGLDLVFSPYGAYWREI 123 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~wk~~ 123 (128)
..+++..+.+++++.+ +++....+ ....+++..+.+++|+.+. +.|+++...............++.++ +++|+++
T Consensus 36 ~~~~~~~~~~lr~~~~~~~~~~~~~-gg~W~vtr~~dv~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~D-~p~H~r~ 112 (417)
T 4dxy_A 36 EDGYHEAWKKVQHPGIPDLIWTPFT-GGHWIATNGDTVKEVYSDP-TRFSSEVIFLPKEAGEKAQMVPTKMD-PPEHTPY 112 (417)
T ss_dssp GGCHHHHHHHHSCTTCCSEEEESST-TSEEEECSHHHHHHHHTCT-TTEESSCCSSSTTSSCSSCTTTTTCC-TTTHHHH
T ss_pred hcChHHHHHHHHhhCCCCEEecCCC-CCEEEECCHHHHHHHHcCc-hhccCCCcccccccccccccCcccCC-cHHHHHH
Confidence 3567777888877654 44443223 3567789999999999653 45654432211111111123344455 9999999
Q ss_pred hhhcC
Q 047568 124 RKICV 128 (128)
Q Consensus 124 R~~l~ 128 (128)
|++++
T Consensus 113 Rrll~ 117 (417)
T 4dxy_A 113 RKALD 117 (417)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99863
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=95.23 E-value=0.0034 Score=43.03 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=52.2
Q ss_pred CCceecccc-----CCCCCCchHHHHHHHhhcCCeEEEEeCCcCeEEEccHHHHHHHHHhcCcccCCCCCh---HH----
Q 047568 33 GLPFIGNLH-----QFDASKPHVSFWELSKKYGPLMSLRLGFVPTLIVSSAKMAKETLKAHDLQFSGRPAL---VA---- 100 (128)
Q Consensus 33 ~~~~~G~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~v~dp~~~~~vl~~~~~~~~~~~~~---~~---- 100 (128)
++|++|+.. .+ ..+++..+.+++++ |+++.. .+.+++++++.+++|+.+ ..|++++.. ..
T Consensus 42 ~~P~~G~~~~~~~~~~-~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~~~~~~~~~~~ 113 (381)
T 2yjn_B 42 GYGSNGDPYPMLLCGH-DDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATGRTPEWMRAAG 113 (381)
T ss_dssp HHHHHTCHHHHHHHTC-CSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCCCCCHHHHHHT
T ss_pred cccccCCchhhcCchh-ccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCcccccccccccc
Confidence 458888652 23 56889999998876 888754 468999999999999976 356555321 11
Q ss_pred --HHHhhcCCcceEecCCChhh
Q 047568 101 --TQRLTYNGLDLVFSPYGAYW 120 (128)
Q Consensus 101 --~~~~~~~~~~l~~~~~g~~w 120 (128)
... . +.++++++ |++|
T Consensus 114 ~~~~~-~--~~~l~~~d-g~~H 131 (381)
T 2yjn_B 114 APPAE-W--AQPFRDVH-AASW 131 (381)
T ss_dssp CCHHH-H--THHHHHHH-HCCC
T ss_pred cccch-h--hhhhhhCC-chhh
Confidence 111 2 45677777 8888
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.42 E-value=6.7 Score=21.25 Aligned_cols=58 Identities=10% Similarity=0.142 Sum_probs=39.9
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC--------CcCeEEEccHHHHHHHHHhcCcccCC
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG--------FVPTLIVSSAKMAKETLKAHDLQFSG 94 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~v~dp~~~~~vl~~~~~~~~~ 94 (128)
.-++|+++. .-..+.+.+...+||++..+.+. +...|...+++.++.++..+...+.+
T Consensus 13 ~lfV~~Lp~---~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~g 78 (103)
T 1s79_A 13 SVYIKGFPT---DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKE 78 (103)
T ss_dssp CEEEECCCT---TCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTT
T ss_pred EEEEECCCC---CCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECC
Confidence 446677653 23446678889999998887653 34678889999999998644333433
No 79
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.02 E-value=7.3 Score=21.24 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=38.4
Q ss_pred ceeccccCCCCCC-chHHHHHHHhhcC-CeEEEEeCCcCeEEEccHHHHHHHHHh
Q 047568 35 PFIGNLHQFDASK-PHVSFWELSKKYG-PLMSLRLGFVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 35 ~~~G~~~~~~~~~-~~~~~~~~~~~~g-~~~~~~~~~~~~v~v~dp~~~~~vl~~ 87 (128)
-+++|+..-...+ ....+.++..+|| ++..+ .++..+|...|.+.++..+..
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~ 65 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKR 65 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHH
Confidence 3478887542222 2345889999995 88888 568899999999999888743
No 80
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=69.83 E-value=9 Score=19.33 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=36.2
Q ss_pred eeccccCCCCCC----chHHHHHHHhhcCCeEEEEeC-------CcCeEEEccHHHHHHHHHh
Q 047568 36 FIGNLHQFDASK----PHVSFWELSKKYGPLMSLRLG-------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 36 ~~G~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~-------~~~~v~v~dp~~~~~vl~~ 87 (128)
++|+++.- ..+ ..+.+.+...+||++..+.+. +...|-..+++.++..+..
T Consensus 5 ~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 5 VVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp EEESCCCC-CTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCCC-cHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 46776532 222 346788889999998888764 3457888899999988853
No 81
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=68.86 E-value=9.7 Score=20.89 Aligned_cols=46 Identities=9% Similarity=0.163 Sum_probs=34.9
Q ss_pred CCCCCCchHHHHHHHhhcCCeEEEEeC-CcCeEEEccHHHHHHHHHh
Q 047568 42 QFDASKPHVSFWELSKKYGPLMSLRLG-FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~v~v~dp~~~~~vl~~ 87 (128)
.|+...-..-++++...||.+.--|+- ....+++.+|+.+++++..
T Consensus 22 ~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 22 TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp ECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHH
T ss_pred eCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 343444557788999999976666654 4589999999999999973
No 82
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=68.07 E-value=5 Score=22.07 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=38.1
Q ss_pred CCCCCchHHHHHHHhhcCCeEEEEeC-CcCeEEEccHHHHHHHHHh--cCcccCCCCC
Q 047568 43 FDASKPHVSFWELSKKYGPLMSLRLG-FVPTLIVSSAKMAKETLKA--HDLQFSGRPA 97 (128)
Q Consensus 43 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~v~v~dp~~~~~vl~~--~~~~~~~~~~ 97 (128)
|+...-..-+.++...||.+.--|+- ....+++++|+.+++++.. ....|.-+..
T Consensus 13 FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~ty 70 (101)
T 3ctr_A 13 FPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQTY 70 (101)
T ss_dssp CCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCCH
T ss_pred CChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEEh
Confidence 33344456688888999976666764 4489999999999999974 2444544443
No 83
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=66.66 E-value=8.9 Score=18.86 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=30.7
Q ss_pred chHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHhcC
Q 047568 48 PHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKAHD 89 (128)
Q Consensus 48 ~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~~~ 89 (128)
..+.+.+..++||++..+.+. +...|-..+++.++..+..+.
T Consensus 12 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 62 (75)
T 1iqt_A 12 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 62 (75)
T ss_dssp CHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC
Confidence 346678888999998777652 235677789999999886543
No 84
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=65.34 E-value=13 Score=19.36 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=36.2
Q ss_pred CCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC----CcCeEEEccHHHHHHH
Q 047568 32 KGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG----FVPTLIVSSAKMAKET 84 (128)
Q Consensus 32 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~v~v~dp~~~~~v 84 (128)
+..-++|++.. .--.+.+.+..++||++..+.+. +...|-..+++.++.+
T Consensus 11 ~~~l~V~~Lp~---~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 11 GSKVFVGRCTE---DMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp CCEEEEESCCT---TCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCEEEEeCCCC---CCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 34456787753 33446688899999999888765 3467888999988854
No 85
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=63.08 E-value=16 Score=19.76 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=41.4
Q ss_pred CCCCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC------CcCeEEEccHHHHHHHHHh-cCcccC
Q 047568 29 PGPKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG------FVPTLIVSSAKMAKETLKA-HDLQFS 93 (128)
Q Consensus 29 pgp~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~v~v~dp~~~~~vl~~-~~~~~~ 93 (128)
|.+...-++|++.. .-..+.+.+...+||++..+.+. +...|-..+++.++..+.. +...+.
T Consensus 5 ~~~~~~l~V~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 5 PEVNRILYIRNLPY---KITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp TTCCSEEEEESCCT---TCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 33444567788753 23445678889999998888762 3468888899998888753 333343
No 86
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=58.48 E-value=15 Score=17.98 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=31.1
Q ss_pred chHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHhcCccc
Q 047568 48 PHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKAHDLQF 92 (128)
Q Consensus 48 ~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~~~~~~ 92 (128)
..+.+.+..++||++..+.+. +...|-..+++.++.++..+...+
T Consensus 12 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~ 65 (75)
T 2mss_A 12 TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEI 65 (75)
T ss_dssp CHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCS
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEE
Confidence 345678888999998777643 135677789999999885433333
No 87
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=56.37 E-value=21 Score=19.02 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=38.3
Q ss_pred CceeccccCCCCCC----chHHHHHHHhhcCCeEEEEeC-------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASK----PHVSFWELSKKYGPLMSLRLG-------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~-------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|+++.- ..+ ..+.+.+...+||++..+.+. +...|-..+++.++..+..
T Consensus 17 ~l~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 17 VIVVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp EEEEESCCCC-CTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred EEEEeCCCcc-hhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 4567888753 222 457788999999999888764 3467777888888888754
No 88
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=54.82 E-value=25 Score=19.44 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=39.4
Q ss_pred CCCCCCceeccccCCCC-------CCchHHHHHHHhhcCCeEEEEeC-----CcCeEEEccHHHHHHHHHh-cCcccCCC
Q 047568 29 PGPKGLPFIGNLHQFDA-------SKPHVSFWELSKKYGPLMSLRLG-----FVPTLIVSSAKMAKETLKA-HDLQFSGR 95 (128)
Q Consensus 29 pgp~~~~~~G~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~-----~~~~v~v~dp~~~~~vl~~-~~~~~~~~ 95 (128)
|.|..+-.+-|+..... .+..+-+.+.+.+||.+..+.+. |.-.|-..+++.++..... ++..|.+|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 44444555666644311 11223456667799998887753 3456777788877776643 44555554
Q ss_pred C
Q 047568 96 P 96 (128)
Q Consensus 96 ~ 96 (128)
.
T Consensus 84 ~ 84 (114)
T 3s6e_A 84 M 84 (114)
T ss_dssp E
T ss_pred E
Confidence 3
No 89
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=52.99 E-value=26 Score=19.03 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=36.5
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.+..++||++..+.+. +...|...+++.++..+..
T Consensus 8 ~lfV~nL~~---~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 8 EVTFARLND---NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp EEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCC---CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 456677753 23456688899999998887652 1257888999999988753
No 90
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.72 E-value=28 Score=19.04 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=37.6
Q ss_pred CCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---CcCeEEEccHHHHHHHHH
Q 047568 32 KGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 32 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~v~dp~~~~~vl~ 86 (128)
...-++|++.. .-..+.+.++.++||.+..+.+. +...|-..|++.++....
T Consensus 16 ~~~LfV~nLp~---~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 16 SRVIHIRKLPI---DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp CCEEEECSCCT---TSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 33456788753 23345578999999998888754 346888889998888875
No 91
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=51.22 E-value=24 Score=18.21 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=36.5
Q ss_pred CceeccccCCCC-CCchHHHHHHHhhcCCeEEEEeC------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDA-SKPHVSFWELSKKYGPLMSLRLG------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++..-.. .+....+.+...+||++..+.+. +...|-..+++.++..+..
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 446777754211 12223445899999998888764 4578888999998888753
No 92
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=50.70 E-value=29 Score=18.89 Aligned_cols=51 Identities=4% Similarity=-0.072 Sum_probs=37.4
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC--CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG--FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++..- -..+.+.+++++||+|..+.+. +..+|...+++.++..+..
T Consensus 18 ~l~V~nLp~~---~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 18 RVVVSGLPPS---GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp CEEEEECCSS---CCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 3567887632 3345577889999998888764 4577888899998888853
No 93
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=49.30 E-value=23 Score=17.92 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=36.3
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHhc
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKAH 88 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~~ 88 (128)
.-++|++.. .-..+.+.+..++||++..+.+. +...|-..+++.++..+...
T Consensus 13 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 13 KMFVGGLSW---DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp EEEEECCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 456677753 23456678889999998777642 12577788999998888543
No 94
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=48.81 E-value=37 Score=20.57 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=36.2
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeC--------CcCeEEEccHHHHHHHHHhc
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG--------FVPTLIVSSAKMAKETLKAH 88 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~v~dp~~~~~vl~~~ 88 (128)
++|+++. .-..+.+.++..+||++..+.+. +...|-..+++.++..+...
T Consensus 113 ~V~nLp~---~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 113 YIKGFPT---DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp EEECCCT---TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred EecCCCC---cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC
Confidence 5566642 34457788999999998777543 34678889999999988543
No 95
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.86 E-value=9.8 Score=20.65 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=34.5
Q ss_pred CceeccccCCCCCCchHHHH---HHHhhcCCeEEEEeC------------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFW---ELSKKYGPLMSLRLG------------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~------------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++..- -..+.+. +...+||++..+.+. +...|-..+++.++..+..
T Consensus 17 ~l~V~nLp~~---~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 17 LVFVVGLSQR---LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp CEEEEEECTT---TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCCC---CCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 4567887643 1223344 788899998877653 2456778899998888864
No 96
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=45.65 E-value=36 Score=18.56 Aligned_cols=48 Identities=6% Similarity=0.100 Sum_probs=33.9
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHH
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~ 86 (128)
++|++.. .-..+.+.++..+||++..+.+. +..+|...+.+.++..+.
T Consensus 40 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 96 (124)
T 2jwn_A 40 YVGNVDY---GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVA 96 (124)
T ss_dssp EEEEECT---TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHT
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHh
Confidence 5566643 23346678889999998777642 235788899999999883
No 97
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.51 E-value=32 Score=17.91 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=36.5
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC--------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG--------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-+++++.. .-..+.+.+..++||++..+.+. +...|-..+++.++..+..
T Consensus 19 ~l~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 19 KLFISGLPF---SCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp CEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH
Confidence 456677753 23345688889999998777653 2367888999999988854
No 98
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=45.41 E-value=41 Score=19.19 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=34.0
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC-----cCeEEEccHHHHHHHHH
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF-----VPTLIVSSAKMAKETLK 86 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~v~v~dp~~~~~vl~ 86 (128)
++||+.. .=-.+.+.+++.+||.+..+.+.. ...|...|++.++....
T Consensus 32 ~V~NL~~---~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~ 84 (130)
T 3zzy_A 32 IVENLFY---PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 84 (130)
T ss_dssp EEESCCS---CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHH
T ss_pred EECCCCC---CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHH
Confidence 4677742 234456889999999988876532 26788888888777764
No 99
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.66 E-value=33 Score=17.81 Aligned_cols=49 Identities=6% Similarity=0.095 Sum_probs=35.0
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++ .--.+.+.++.++||++..+.+. +...|-..+++.++..+..
T Consensus 17 ~l~V~n~-----~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 17 TLYVYGE-----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp EEEEECS-----SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEcCC-----CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 3456773 22346678899999998888764 3367777899998888854
No 100
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.49 E-value=41 Score=18.82 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=36.5
Q ss_pred CCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---CcCeEEEccHHHHHHHHH
Q 047568 33 GLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 33 ~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~v~dp~~~~~vl~ 86 (128)
..-++|++.. .-..+.+.+++++||.|..+.+. +...|-..+.+.++..+.
T Consensus 32 ~~LfVgNLp~---~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 32 RVIHIRKLPI---DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp SEEEEESCCT---TCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 3456788754 23345678999999998877654 346777888888888775
No 101
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=43.87 E-value=38 Score=18.27 Aligned_cols=54 Identities=7% Similarity=0.115 Sum_probs=38.6
Q ss_pred CCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---cCeEEEccHHHHHHHHH
Q 047568 31 PKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---VPTLIVSSAKMAKETLK 86 (128)
Q Consensus 31 p~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~v~v~dp~~~~~vl~ 86 (128)
|...-++|++..- .--.+.+.+++++||.|..+.+.. ...|-..|.+.+++...
T Consensus 14 p~~~l~V~nLp~~--~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRG--KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCS--SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCC--cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 3444567887531 233456788899999999888653 46888889998888875
No 102
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.43 E-value=31 Score=17.24 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=34.2
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHH
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~ 86 (128)
.-++|++.. .-..+.+.++.++||++..+.+. +...|-..+++.++..+.
T Consensus 7 ~l~v~nlp~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQP---GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEEEESCCT---TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 445677643 23345577778899998877642 235778899999888875
No 103
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.95 E-value=39 Score=18.13 Aligned_cols=51 Identities=8% Similarity=0.019 Sum_probs=34.8
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHhcC
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKAHD 89 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~~~ 89 (128)
++|++.. .-..+.+.++..+||.+..+.+. +..+|-..+++.++..+..+.
T Consensus 29 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g 88 (114)
T 2cq4_A 29 FCMQLAA---RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTG 88 (114)
T ss_dssp EEESCCT---TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTT
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCC
Confidence 5676643 23345688889999998888764 235677788888888773333
No 104
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.89 E-value=39 Score=18.14 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=31.1
Q ss_pred hHHHHHHHhhcCCeEEEEeC----CcCeEEEccHHHHHHHHHh
Q 047568 49 HVSFWELSKKYGPLMSLRLG----FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 49 ~~~~~~~~~~~g~~~~~~~~----~~~~v~v~dp~~~~~vl~~ 87 (128)
.+.+.+++.+||+|..+.+. +..+|-..+++.++..+..
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 46788999999998888763 2367888899998888865
No 105
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=42.56 E-value=82 Score=21.95 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=36.8
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|||..- -....+.+++.+||+|..+.+. +..+|...+++.++.++..
T Consensus 104 ~lfV~nL~~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 104 TLFVARVNYD---TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred EEEEeCCCCC---CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 4567887532 2346678889999998887652 2368888899999888854
No 106
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.46 E-value=35 Score=17.45 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=37.2
Q ss_pred CCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 32 KGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 32 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
...-+++++..- -..+.+.++.++||++..+.+. +...|-..+++.++..+..
T Consensus 15 ~~~l~v~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 15 NCCLGVFGLSLY---TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp GGCEEEESCCSS---CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEECCCCC---CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 345567777532 3445688889999998777652 1357788999999988864
No 107
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.68 E-value=36 Score=17.42 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=36.3
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---------cCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---------VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~v~dp~~~~~vl~~ 87 (128)
.-+++++.. .-..+.+.++.++||++..+.+.. ..+|-..+++.++..+..
T Consensus 7 ~l~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 7 GLYVGSLHF---NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp EEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 445677653 234466888899999988776522 357888999999998863
No 108
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=41.67 E-value=41 Score=18.09 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCeEEEEeC-----------CcCeEEEccHHHHHHHHHh-cCcccCCC
Q 047568 50 VSFWELSKKYGPLMSLRLG-----------FVPTLIVSSAKMAKETLKA-HDLQFSGR 95 (128)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~-----------~~~~v~v~dp~~~~~vl~~-~~~~~~~~ 95 (128)
+-+.+.+.+||++..+.+. +.-.|-..+++.++..... +...|.+|
T Consensus 30 ~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR 87 (105)
T 3v4m_A 30 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 87 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 4567778899999888753 2246777888887777633 44444443
No 109
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=41.64 E-value=43 Score=18.30 Aligned_cols=58 Identities=14% Similarity=0.284 Sum_probs=39.7
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh-cCcccCC
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA-HDLQFSG 94 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~-~~~~~~~ 94 (128)
.-+++++.. .-..+.+.++..+||++..+.+. +..+|-..+++.++..+.. +...+.+
T Consensus 24 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 91 (126)
T 3ex7_B 24 ILFVTGVHE---EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 91 (126)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 346677753 23446678889999999888753 3467888999999998853 3333433
No 110
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=40.93 E-value=57 Score=19.50 Aligned_cols=49 Identities=14% Similarity=0.172 Sum_probs=35.0
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeC-----CcCeEEEccHHHHHHHHHh
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG-----FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~v~v~dp~~~~~vl~~ 87 (128)
++||+.. .-..+.+.+.+.+||.|..+.+. +...|-..|++.+++....
T Consensus 50 ~VgNL~~---~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 50 IVENLFY---PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp EECSCCS---CCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH
T ss_pred EEeCcCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH
Confidence 4677642 23346688999999998887763 2467888899888877754
No 111
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=39.75 E-value=45 Score=18.02 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=36.1
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC-------CcCeEEEccHHHHHHHHHh
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG-------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~v~dp~~~~~vl~~ 87 (128)
-++|++.. .--.+.+.++..+||+|..+.+. +...|-..+++.++..+..
T Consensus 8 lfV~nLp~---~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 8 IFIKNLDK---SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EEECCCCC---CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 46677753 23346788899999998776542 2368888999999988854
No 112
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.68 E-value=44 Score=17.79 Aligned_cols=51 Identities=6% Similarity=-0.039 Sum_probs=37.8
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC--CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG--FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.++.++||+|..+.+. +...|-..+++.++..+..
T Consensus 17 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 17 RVVVSGLPP---SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEEEESCCS---SCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 346777753 33456688899999998887753 4678888999999888864
No 113
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.16 E-value=42 Score=17.52 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=36.6
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.++.++||++..+.+. +..+|-..+++.++..+..
T Consensus 15 ~l~V~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2dnm_A 15 TLKVDNLTY---RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74 (103)
T ss_dssp EEEEESCCT---TCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHH
Confidence 346677753 23446688889999998888763 2357888899888888863
No 114
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.93 E-value=37 Score=17.87 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=36.2
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---------cCeEEEccHHHHHHHHHhc
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---------VPTLIVSSAKMAKETLKAH 88 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~v~dp~~~~~vl~~~ 88 (128)
.-+++++.. .-..+.+.++.++||++..+.+.. ..+|-..+++.++.++..+
T Consensus 18 ~l~V~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~ 78 (105)
T 2dh8_A 18 KLFVGGLDW---STTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 78 (105)
T ss_dssp EECCBSCCT---TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhC
Confidence 345677643 234466788899999987765422 3577888999999988663
No 115
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.82 E-value=44 Score=17.30 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=35.8
Q ss_pred CceeccccCCCC-CCchHHHHHHHhhcCCeEEEEeC------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDA-SKPHVSFWELSKKYGPLMSLRLG------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++..-.. .+....+.+..++||++..+.+. +...|-..+++.++..+..
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~ 71 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNS 71 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHH
Confidence 346777753211 22223344899999999888764 3367778899998888753
No 116
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=37.55 E-value=57 Score=18.52 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=34.5
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---------cCeEEEccHHHHHHHHHhc
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---------VPTLIVSSAKMAKETLKAH 88 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~v~dp~~~~~vl~~~ 88 (128)
++|++.. .-..+.+.+..++||++..+.+.. ...|-..+++.++..+..+
T Consensus 91 ~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 149 (167)
T 2cjk_A 91 FVGGIGP---DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNK 149 (167)
T ss_dssp EEEEECT---TCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCS
T ss_pred EECCCCC---CCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCC
Confidence 4556542 233466788889999987776432 3568888999999988643
No 117
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.26 E-value=45 Score=17.22 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=37.6
Q ss_pred CCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---cCeEEEccHHHHHHHHHh
Q 047568 33 GLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 33 ~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~v~v~dp~~~~~vl~~ 87 (128)
..-++|++..- -..+.+.++.++||++..+.+.. ...|-..+++.++..+..
T Consensus 18 ~~l~V~nlp~~---~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 18 TRLWVGGLGPN---TSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp SCEEEECCCSS---CCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 34567777532 33466788999999988887643 467778899998888753
No 118
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=37.19 E-value=53 Score=18.09 Aligned_cols=48 Identities=6% Similarity=0.106 Sum_probs=33.4
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---CcCeEEEccHHHHHHHHHh
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~v~dp~~~~~vl~~ 87 (128)
-++|++ .-..+.+.++.++||++..+.+. +...|...+++.++..+..
T Consensus 42 lfVgnl-----~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 42 LYVYGE-----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp EEEECS-----SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred EEEcCC-----CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 456762 22346688889999987776653 3467777899988888743
No 119
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=36.84 E-value=47 Score=17.40 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=35.8
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
-++|++.. .-..+.+.+..++||++..+.+. +...|-..+++.++..+..
T Consensus 26 l~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 26 LFVTGVHE---EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp EEEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 45677653 23445688899999998887653 2357788999999888853
No 120
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=36.68 E-value=46 Score=17.15 Aligned_cols=50 Identities=10% Similarity=0.290 Sum_probs=35.2
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
-++|++.. .-..+.+.+..++||++..+.+. +...|-..+++.++..+..
T Consensus 5 l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 5 VYLGSIPY---DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 35566642 23346688889999998888753 2357888999999888843
No 121
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=36.26 E-value=49 Score=17.34 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=37.5
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC-CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG-FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~v~v~dp~~~~~vl~~ 87 (128)
.-+++++.. .-..+.+.++.++||++..+.+. +..+|-..+++.++..+..
T Consensus 13 ~l~V~nl~~---~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 13 VLFVRNLAN---TVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CEEEECCCT---TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHH
Confidence 456677753 23446688889999998888764 3467888999999988863
No 122
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=35.98 E-value=49 Score=17.30 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=36.8
Q ss_pred CCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC--------CcCeEEEccHHHHHHHHHh
Q 047568 33 GLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG--------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 33 ~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~v~dp~~~~~vl~~ 87 (128)
..-++|++.. .-..+.+.++.++||++..+.+. +..+|-..+++.++..+..
T Consensus 16 ~~l~v~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 16 RKLFVGMLNK---QQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CEEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 3456777753 23446688899999998877653 2367888999999988853
No 123
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.82 E-value=57 Score=17.98 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=36.1
Q ss_pred CCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---CcCeEEEccHHHHHHHHH
Q 047568 33 GLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 33 ~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~v~dp~~~~~vl~ 86 (128)
..-++||+..- .-..+.+.+++++||.+..+.+. +...|-..|.+.++..+.
T Consensus 26 ~~l~V~NLp~~--~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 26 RVIHLSNLPHS--GYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CEEEEESCCCS--SCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred CEEEEeCCCCc--cCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHH
Confidence 34567887541 12335577888999998888764 336777889988888775
No 124
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=35.50 E-value=49 Score=17.18 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=33.9
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeC----CcCeEEEccHHHHHHHHHh
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG----FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~v~v~dp~~~~~vl~~ 87 (128)
++|++.. .-..+.+.+..++||++..+.+. +...|-..+++.++..+..
T Consensus 4 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 4 YVGNLGT---GAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp EEECCCS---SCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHH
Confidence 3455532 23345678889999998777642 3467888999999888863
No 125
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=34.91 E-value=52 Score=17.30 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=35.0
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---------cCeEEEccHHHHHHHHHh
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---------VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~v~dp~~~~~vl~~ 87 (128)
-++|+++. .--.+.+.++.++||++..+.+.. ...|-..+++.++..+..
T Consensus 22 lfV~nLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 22 LIVNYLPQ---NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 46677753 233466888899999988776421 246888899999888753
No 126
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.62 E-value=60 Score=17.91 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=30.3
Q ss_pred HHHHHHHhh---c--CCeEEEE-eCCcCeEEEccHHHHHHHHHhcCcccCC
Q 047568 50 VSFWELSKK---Y--GPLMSLR-LGFVPTLIVSSAKMAKETLKAHDLQFSG 94 (128)
Q Consensus 50 ~~~~~~~~~---~--g~~~~~~-~~~~~~v~v~dp~~~~~vl~~~~~~~~~ 94 (128)
+.++-.+++ . |++..+. .....+|...|++.++.||.+....+.+
T Consensus 23 e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k~~H~L~~ 73 (104)
T 2dhx_A 23 ELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQADHELHG 73 (104)
T ss_dssp HHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTCSCCBSSS
T ss_pred hHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcCCcceecC
Confidence 444444444 2 3677775 5666899999999999999773333433
No 127
>2zdj_A Hypothetical protein TTMA177; alpha and beta proteins (A+B), cystatin-like, NPPSFA; 2.20A {Thermus thermophilus phage tma}
Probab=34.60 E-value=45 Score=16.50 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=16.3
Q ss_pred CcCeEEEccHHHHHHHHHhc
Q 047568 69 FVPTLIVSSAKMAKETLKAH 88 (128)
Q Consensus 69 ~~~~v~v~dp~~~~~vl~~~ 88 (128)
+...+++.||..++.||..-
T Consensus 11 ~D~Y~l~qdsq~VK~iLeyI 30 (69)
T 2zdj_A 11 GDDYTLIQDSQEVKAILEYI 30 (69)
T ss_dssp CTTCEEECCHHHHHHHHHHH
T ss_pred CCCeEEEeCHHHHHHHHHHh
Confidence 34678999999999999653
No 128
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=34.13 E-value=50 Score=16.84 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=35.7
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC--------CcCeEEEccHHHHHHHHH
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG--------FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~v~dp~~~~~vl~ 86 (128)
.-+++++.. .-..+.+.++.++||++..+.+. +...|-..+++.++..+.
T Consensus 18 ~l~v~nlp~---~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 18 TVFVGNLEA---RVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp EEEEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHH
T ss_pred EEEEECCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 345677653 23346688899999998877653 235788889999888885
No 129
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=33.94 E-value=58 Score=17.51 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=38.6
Q ss_pred CCCCceeccccCCC--CCCchHHHHHHHhhcCCeEEEEeC----------CcCeEEEccHHHHHHHHHh-cCcccCCC
Q 047568 31 PKGLPFIGNLHQFD--ASKPHVSFWELSKKYGPLMSLRLG----------FVPTLIVSSAKMAKETLKA-HDLQFSGR 95 (128)
Q Consensus 31 p~~~~~~G~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~v~v~dp~~~~~vl~~-~~~~~~~~ 95 (128)
|..+-++.|+..-. ..+..+-+.+.+.+||.+..+.+. +.-.|-..+++.+...... +...|.+|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 44455667765310 234456778888999998887642 1245777888877776643 44445443
No 130
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.82 E-value=50 Score=16.80 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=36.8
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC-cCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF-VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.++.++||++..+.+.. ...|-..+++.++..+..
T Consensus 12 ~l~V~nLp~---~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 12 KLHVGNISP---TCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp EEEEESCCS---SCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 346677753 234566888999999988877543 467778899998888753
No 131
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.71 E-value=52 Score=16.92 Aligned_cols=51 Identities=22% Similarity=0.168 Sum_probs=36.4
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC------------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG------------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.++.++||++..+.+. +..+|-..+++.++..+..
T Consensus 7 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 7 GLFIKNLNF---STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CEEEESCCT---TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 456677753 23446678888999998776543 2367888999999999864
No 132
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.66 E-value=41 Score=18.10 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=35.0
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
-++|++.. .-..+.+.++..+||++..+.+. +..+|...+++.++..+..
T Consensus 30 l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 30 LFIGGLSF---ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp EEEECCTT---CCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 35677643 23346678889999988776542 2356777899999999865
No 133
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=33.63 E-value=54 Score=17.08 Aligned_cols=52 Identities=15% Similarity=0.346 Sum_probs=37.2
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC-CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG-FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. ..-..+.+.+...+||++..+.+. +...|-..+++.++..+..
T Consensus 24 ~l~V~nLp~--~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 24 RLFIGNLPL--KNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp EEEEESCCS--SCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCc--ccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 346677753 023346688899999998888763 4477888999999888853
No 134
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=33.52 E-value=72 Score=18.50 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=36.0
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
-++|++.. .-....+.+++.+||+|..+.+. +..+|-..+++.++..+..
T Consensus 75 l~V~nLp~---~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 75 LFVTSIHE---EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133 (165)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH
Confidence 46677653 23456688899999998777653 2467888999998888853
No 135
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=33.52 E-value=57 Score=17.35 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=33.6
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---CcCeEEEccHHHHHHHHH
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~v~dp~~~~~vl~ 86 (128)
+-++||+.. .---+.+.+++.+||++..+.+. |...|-..|++.++....
T Consensus 9 wL~VgNL~~---~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 9 WLLLKNLTA---QIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp EEEEECCCT---TCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred eEEEeCCCc---cCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 345677643 23337789999999999888743 336777778866666553
No 136
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=33.47 E-value=55 Score=17.13 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=36.2
Q ss_pred CceeccccCCCC---CCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHH
Q 047568 34 LPFIGNLHQFDA---SKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 34 ~~~~G~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~ 86 (128)
.-++|+++.... .-..+.+.+...+||++..+.+. +...|-..+++.++..+.
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~ 72 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIK 72 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 346677764311 12235677888999998888753 335788889999888874
No 137
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.25 E-value=54 Score=17.00 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=36.6
Q ss_pred CCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 32 KGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 32 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
...-++|++..- -..+.+.++.++||++..+.+. +..+|-..+++.++..+..
T Consensus 12 ~~~l~V~nLp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 12 KRVLYVGGLAEE---VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CSCEEEESCCSS---CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH
T ss_pred CCEEEEeCCCCC---CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 345567887542 3346688889999988777652 2256777899998888853
No 138
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=33.20 E-value=57 Score=17.20 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCC
Q 047568 7 LPIFLFFVLRRHITSSYASSLPPGPKG 33 (128)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~pgp~~ 33 (128)
++++++|++++.+....-...--||++
T Consensus 14 lvliliwlwfrnrpaaqvasnwegppy 40 (117)
T 1w8x_P 14 LVLILIWLWFRNRPAAQVASNWEGPPY 40 (117)
T ss_dssp HHHHHHHHHHHHTTCSCSSCTTCCCCT
T ss_pred hhhHHHHHHHccChHHHHhhcCCCCCc
Confidence 344555666655333333344455553
No 139
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.02 E-value=60 Score=17.40 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=37.0
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---------cCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---------VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~v~dp~~~~~vl~~ 87 (128)
.-+++++.. .-..+.+.++.++||++..+.+.. ..+|-..+++.++..+..
T Consensus 19 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 19 KIFVGGLPY---HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp EEEEECCCS---SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 346677753 233466888889999988887643 357888999999999854
No 140
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=32.96 E-value=62 Score=17.55 Aligned_cols=51 Identities=22% Similarity=0.207 Sum_probs=36.1
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC--------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG--------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.++.++||++..+.+. +...|-..+++.++..+..
T Consensus 9 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 9 KLFIGGLNR---ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp EEEEECCTT---TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 345677643 23446688899999988777643 3457888999999998854
No 141
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=32.82 E-value=68 Score=17.98 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=36.3
Q ss_pred CceeccccCCCC-CCchHHHHHHHhhcCCeEEEEeC------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDA-SKPHVSFWELSKKYGPLMSLRLG------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++..-.. .+.-..+.+++.+||+|..+.+. +...|...+++.+...+..
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~ 91 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEA 91 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHH
Confidence 356788764211 12223467889999999887653 3467888899988888754
No 142
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.67 E-value=56 Score=17.01 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=36.1
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC-------CcCeEEEccHHHHHHHHH
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG-------FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~v~dp~~~~~vl~ 86 (128)
.-++|++.. .-..+.+.++.++||++..+.+. +..+|-..+++.++..+.
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 17 TLYVGNLSR---DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCc---cCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 456677753 23446688889999998877653 245788899999988885
No 143
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.67 E-value=56 Score=17.01 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=37.2
Q ss_pred CCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC-------CcCeEEEccHHHHHHHHHh
Q 047568 32 KGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG-------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 32 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~v~dp~~~~~vl~~ 87 (128)
...-++|++..- -..+.+.++.++||++..+.+. +..+|-..+++.++..+..
T Consensus 15 ~~~l~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 15 VVNLYVKNLDDG---IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE 74 (103)
T ss_dssp CCCEEEECCCTT---CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHH
Confidence 345567887532 3345677888899998777653 2367888999999988863
No 144
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=32.62 E-value=51 Score=16.50 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=32.6
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHH
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~ 86 (128)
++|++.. .-..+.+.+..++||++..+.+. +...|-..+++.++..+.
T Consensus 10 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 66 (89)
T 3ucg_A 10 YVGNVDY---GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 66 (89)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGG
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHh
Confidence 4455542 23446678889999998777542 135778889998888873
No 145
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.93 E-value=58 Score=16.90 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=36.4
Q ss_pred CCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---------cCeEEEccHHHHHHHHHh
Q 047568 33 GLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---------VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 33 ~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~v~dp~~~~~vl~~ 87 (128)
..-+++++.. .-..+.+.++.++||++..+.+.. ..+|-..+++.++..+..
T Consensus 13 ~~l~v~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 13 GKLFVGGLSF---DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp SEEEEESCCT---TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 3456677753 234466788889999987776543 356778899999888843
No 146
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.88 E-value=51 Score=16.58 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=33.7
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC----CcCeEEEccHHHHHHH
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG----FVPTLIVSSAKMAKET 84 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~v~v~dp~~~~~v 84 (128)
-++|++.. .-..+.+.+..++||++..+.+. +...|-..+++.++++
T Consensus 8 l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 8 VFVGRCTG---DMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp EEEESCCS---SSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred EEEeCCCC---CCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 45677643 23346678888999998888764 3478888999988764
No 147
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.77 E-value=63 Score=17.31 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=36.9
Q ss_pred CCCCCCCceeccccCCCC--CC------chHHHHHHHhhcCCeEEEEeC-----CcCeEEEccHHHHHHHHHh
Q 047568 28 PPGPKGLPFIGNLHQFDA--SK------PHVSFWELSKKYGPLMSLRLG-----FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 28 ~pgp~~~~~~G~~~~~~~--~~------~~~~~~~~~~~~g~~~~~~~~-----~~~~v~v~dp~~~~~vl~~ 87 (128)
.|.|...-++.|+..-.. .+ ..+.+.+.+.+||++..+.+. +...|-..+++.++..+..
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHH
Confidence 344445566677643210 01 125677788899987777542 3456777888888887743
No 148
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=31.50 E-value=88 Score=18.91 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=37.1
Q ss_pred CCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 33 GLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 33 ~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
..-++|++.. .--.+.+.++.++||+|..+.+. +...|-..+++.++..+..
T Consensus 16 ~tlfVgnLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 16 ASLYVGDLHP---DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp CEEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred cEEEEeCCCC---CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 3456788753 23346678889999998877642 1357888999999888754
No 149
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=31.47 E-value=62 Score=17.10 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=36.3
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
-++|++.. .-..+.+.++.++||++..+.+. +...|-..+++.++..+..
T Consensus 29 l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 29 LFVTSIHE---EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 46677753 23445688899999998888763 3357888999999888853
No 150
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.00 E-value=59 Score=16.76 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=38.6
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHhcCccc
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKAHDLQF 92 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~~~~~~ 92 (128)
.-++|++.. .-..+.+.++.++||++..+.+. +..+|-..+++.++..+..+...+
T Consensus 12 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~ 76 (99)
T 2dgs_A 12 KIFVGGIPH---NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDI 76 (99)
T ss_dssp EEEEESCCS---SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEE
Confidence 346677753 23445678889999998888763 235788899999999886443333
No 151
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=30.74 E-value=69 Score=17.45 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=36.6
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcC-CeEEEEeC-----CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYG-PLMSLRLG-----FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.+..++|| .+..+.+. +...|-..+++.++..+..
T Consensus 30 ~l~VgnLp~---~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 30 RITMKNLPE---GCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp EEEEECSSC---CCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCC---CCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH
Confidence 456788753 334566888999999 77776653 4467888899998888753
No 152
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=30.65 E-value=63 Score=16.93 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=35.5
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC--------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG--------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-+++++.. .-..+.+.+..++||++..+.+. +...|-..+++.++..+..
T Consensus 31 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 31 KLLVSNLDF---GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 345677643 23345678889999998776543 2357788899999888864
No 153
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.60 E-value=60 Score=16.70 Aligned_cols=53 Identities=11% Similarity=0.044 Sum_probs=36.4
Q ss_pred CCCceeccccCCCCCCchHHHHHHHhhcCCeE-EEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 32 KGLPFIGNLHQFDASKPHVSFWELSKKYGPLM-SLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 32 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
...-++|++.. .-..+.+.+..++||++. .+.+. +...|-..+++.++..+..
T Consensus 9 ~~~l~V~nLp~---~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 9 AASLWMGDLEP---YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp SSEEEECSCCT---TCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred ccEEEEeCCCC---CCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 33456777753 234466788899999877 66542 2357778899999998853
No 154
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=30.49 E-value=55 Score=16.20 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=36.2
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.+..++||++..+.+. +...|-..+++.++..+..
T Consensus 9 ~l~V~nl~~---~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 9 VLYVGGLAE---EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp EEEEECCCT---TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCC---CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 456677653 23346678889999998887652 2367888999999888843
No 155
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.33 E-value=59 Score=16.50 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=37.3
Q ss_pred CCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---------cCeEEEccHHHHHHHHHh
Q 047568 33 GLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---------VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 33 ~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~v~dp~~~~~vl~~ 87 (128)
..-++++++. .-..+.+.++.++||++..+.+.. ...|-..+++.++..+..
T Consensus 17 ~~l~V~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 17 STVYVSNLPF---SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp TSEEEESCCT---TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 3456777753 234456888889999988887632 357888999999988853
No 156
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.33 E-value=61 Score=16.68 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=36.4
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-+++++.. .-..+.+.++.++||++..+.+. +..+|-..+++.++..+..
T Consensus 10 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 10 RLFVRNLSY---TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEEEECCCT---TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 345677643 23345688889999999888763 2357888999999998843
No 157
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.02 E-value=48 Score=17.69 Aligned_cols=50 Identities=6% Similarity=0.086 Sum_probs=34.1
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC-------CcCeEEEccHHHHHHHHHh
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG-------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~v~dp~~~~~vl~~ 87 (128)
-++|++.. .-..+.+.+..++||++..+.+. +...|-..+++.++..+..
T Consensus 32 l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 32 LHVSNIPF---RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp EEEESCCT---TCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred EEEECCCC---cCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 45677643 23446678889999987777653 3356777888888887753
No 158
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.01 E-value=69 Score=17.18 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=39.0
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---CcCeEEEccHHHHHHHHHh-cCcccCCC
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---FVPTLIVSSAKMAKETLKA-HDLQFSGR 95 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~v~dp~~~~~vl~~-~~~~~~~~ 95 (128)
-++|++.. .-..+.+.+++.+||++..+.+. +...|-..+++.++..+.. +...+.++
T Consensus 13 l~V~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 13 ILAKNLPA---GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 35566642 33456688999999999888753 3467888899988888753 33334443
No 159
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=29.71 E-value=52 Score=18.33 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=13.1
Q ss_pred eEEEccHHHHHHHHHh
Q 047568 72 TLIVSSAKMAKETLKA 87 (128)
Q Consensus 72 ~v~v~dp~~~~~vl~~ 87 (128)
+++.+||+.+++|...
T Consensus 6 vvfssdpeilkeivre 21 (162)
T 2l82_A 6 VVFSSDPEILKEIVRE 21 (162)
T ss_dssp EEEESCHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHH
Confidence 6788999999998743
No 160
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.69 E-value=69 Score=17.13 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=29.1
Q ss_pred chHHHHHHHhhcCCeEEEEeC-CcCeEEEccHHHHHHHHHhc
Q 047568 48 PHVSFWELSKKYGPLMSLRLG-FVPTLIVSSAKMAKETLKAH 88 (128)
Q Consensus 48 ~~~~~~~~~~~~g~~~~~~~~-~~~~v~v~dp~~~~~vl~~~ 88 (128)
....+.+...+||.+..+.+. .+-.|-..|.+.+..++.-+
T Consensus 28 l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mn 69 (91)
T 2dnr_A 28 LIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLN 69 (91)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGT
T ss_pred HHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcC
Confidence 345567777789998888754 44677778888887777533
No 161
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.55 E-value=67 Score=16.90 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=38.5
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEE-EEeC--------CcCeEEEccHHHHHHHHHhcCcccCC
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMS-LRLG--------FVPTLIVSSAKMAKETLKAHDLQFSG 94 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~--------~~~~v~v~dp~~~~~vl~~~~~~~~~ 94 (128)
.-++|++.. .-..+.+.+..++||.+.. +.+. +...|-..+++.++..+..+...+.+
T Consensus 17 ~l~V~nLp~---~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~g 83 (104)
T 1wg5_A 17 FVRLRGLPF---GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGH 83 (104)
T ss_dssp EEEEESCCT---TCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCC
Confidence 346677753 2344667888889998754 4331 34688889999999998764444433
No 162
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.51 E-value=65 Score=16.75 Aligned_cols=51 Identities=6% Similarity=0.070 Sum_probs=36.5
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC-------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG-------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-+++++.. .-..+.+.++.++||++..+.+. +..+|-..+++.++..+..
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 17 RLHVSNIPF---RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 74 (103)
T ss_dssp EEEEESCCT---TCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHH
Confidence 446677753 23345678888999998887653 3467888999999988853
No 163
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.47 E-value=65 Score=16.75 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=37.7
Q ss_pred CCCCceeccccCCCCCCchHHHHHHHhh-cCCeEEEEeC--------CcCeEEEccHHHHHHHHHh
Q 047568 31 PKGLPFIGNLHQFDASKPHVSFWELSKK-YGPLMSLRLG--------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 31 p~~~~~~G~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~--------~~~~v~v~dp~~~~~vl~~ 87 (128)
+...-++|++..- -..+.+.+...+ ||++..+.+. +...|-..+++.++..+..
T Consensus 8 ~~~~l~V~nLp~~---~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 8 PEYSLFVGDLTPD---VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp CCCCEEEECCCTT---CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCC---CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 3345567887532 334567888888 9998777652 2367888999999998864
No 164
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.20 E-value=55 Score=15.80 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=31.1
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHhc
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKAH 88 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~~ 88 (128)
++|+++. .-..+.+.+..++||++..+.+. +...|-..+++.++..+...
T Consensus 4 ~v~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 62 (77)
T 1uaw_A 4 FIGGLSW---QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62 (77)
T ss_dssp EEESCCS---SCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC
Confidence 3455542 22335578888999987665432 12456667888888887544
No 165
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.05 E-value=62 Score=16.35 Aligned_cols=51 Identities=18% Similarity=0.321 Sum_probs=36.9
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.++.++||++..+.+ -+...|-..+++.++..+..
T Consensus 10 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 10 KLFIGNLPR---EATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp EEEEESCCS---SCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 446677753 2344668889999999888764 34578888999999888843
No 166
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=28.98 E-value=62 Score=16.33 Aligned_cols=51 Identities=12% Similarity=0.082 Sum_probs=35.8
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC-------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG-------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-+++++.. .-..+.+.++.++||++..+.+. +...|-..+++.++..+..
T Consensus 10 ~l~V~nlp~---~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 10 QIFVRNLPF---DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp EEEECSCCT---TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHH
Confidence 345677753 23446688899999998777643 2357778899999888754
No 167
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=28.86 E-value=72 Score=17.08 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=34.0
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---------cCeEEEccHHHHHHHHHh
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---------VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~v~dp~~~~~vl~~ 87 (128)
++|++.. .-..+.+.++.++||++..+.+.. ..+|-..+++.++..+..
T Consensus 44 ~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 44 FIYHLPQ---EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp EEECSCT---TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 4566643 233466788889999988876632 346777888888888754
No 168
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.73 E-value=72 Score=16.99 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=36.1
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---CcCeEEEccHHHHHHHHH
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~v~dp~~~~~vl~ 86 (128)
.-++|++.. .-..+.+.++.++||.+..+.+. +...|-..|.+.++..+.
T Consensus 17 ~l~V~nLp~---~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 17 VLHIRKLPG---EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp EEEEESCCT---TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 456788763 23345577889999998887653 346888889998888775
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=28.38 E-value=93 Score=18.17 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=38.3
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHhcCc
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKAHDL 90 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~~~~ 90 (128)
.-++|+++. .-..+.+.++.++||++..+.+. +...|...+++.++..+.....
T Consensus 15 ~l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~ 77 (196)
T 1l3k_A 15 KLFIGGLSF---ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH 77 (196)
T ss_dssp EEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCC
Confidence 456777753 23446678899999998776542 1367888999999999865433
No 170
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.10 E-value=68 Score=16.54 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=35.3
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.++.++||++..+.+. +...|-..+++.++..+..
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 17 RLFVGNLPP---DITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp EEEEESCCT---TCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 456677753 23445678888999998777653 3356777888888887743
No 171
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=27.72 E-value=84 Score=17.42 Aligned_cols=50 Identities=16% Similarity=0.287 Sum_probs=35.3
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
-++|++.. .-..+.+.++..+||+|..+.+. +..+|-..+++.++..+..
T Consensus 45 l~V~nLp~---~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 45 LMVNYIPT---TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp EEEESCST---TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 35677643 23346688889999998777652 1357888999999998864
No 172
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=27.70 E-value=94 Score=18.01 Aligned_cols=49 Identities=12% Similarity=0.294 Sum_probs=34.3
Q ss_pred eeccccCCCCCCchHHHHHHHhhcC--CeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYG--PLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
++|++.. .--.+.+.++..+|| .+..+.+. +..+|-..+++.++..+..
T Consensus 59 fVgnLp~---~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 59 YVGSFSW---WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp EEECCCT---TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4555532 233466888899999 88777652 1357888999999998865
No 173
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=27.65 E-value=1.1e+02 Score=19.48 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=39.3
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC-------CcCeEEEccHHHHHHHHHhcCccc
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG-------FVPTLIVSSAKMAKETLKAHDLQF 92 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~v~v~dp~~~~~vl~~~~~~~ 92 (128)
.-++|+++. .--.+.+.++.++||++..+.+. +...|...+++.++..+..+...+
T Consensus 43 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~ 105 (292)
T 2ghp_A 43 TVLVKNLPK---SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVV 105 (292)
T ss_dssp EEEEEEECT---TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEe
Confidence 456788753 23346688899999998777642 346888999999999985433333
No 174
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=27.56 E-value=62 Score=15.88 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=29.8
Q ss_pred chHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 48 PHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 48 ~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
..+.+.+..++||++..+.+. +...|-..+++.++..+..
T Consensus 14 t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 14 DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 345677888999998777542 2257888999999988853
No 175
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=27.52 E-value=70 Score=16.45 Aligned_cols=52 Identities=15% Similarity=0.344 Sum_probs=37.4
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++..- .-..+.+.++..+||++..+.+ -+...|-..+++.++..+..
T Consensus 12 ~l~V~nlp~~--~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 64 (96)
T 2kvi_A 12 RLFIGNLPLK--NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEC 64 (96)
T ss_dssp EEEEESSTTS--CCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCcc--cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 3466777530 2344667888999999877765 34578888999999998864
No 176
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.47 E-value=67 Score=16.21 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=38.2
Q ss_pred CCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC-cCeEEEccHHHHHHHHHh
Q 047568 32 KGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF-VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 32 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~v~v~dp~~~~~vl~~ 87 (128)
...-++|++.. .-..+.+.+..++||++..+.+.. ...|-..+++.++..+..
T Consensus 9 ~~~l~V~nlp~---~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 9 TWKIFVGNVSA---ACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp SCCEEEESCCT---TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHH
T ss_pred CCEEEEeCCCC---CCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 33556787753 234466788899999988887643 467888999998888753
No 177
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=27.30 E-value=86 Score=17.42 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=37.1
Q ss_pred CCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 33 GLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 33 ~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
..-++|++..- -..+.+.++.++||++..+.+. +..+|-..+++.++.++..
T Consensus 47 ~~l~V~nLp~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 47 CCLGVFGLSLY---TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp SCBCEETCTTS---CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 35567777532 3345688889999998887653 2357788999999988863
No 178
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.05 E-value=77 Score=16.80 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=36.2
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC--------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG--------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-+++++.. .-..+.+.++..+||++..+.+. +..+|...+++.++..+..
T Consensus 17 ~l~V~nlp~---~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 17 TVFVANLDY---KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 456777753 23446688899999998776543 2357888899999888753
No 179
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=26.56 E-value=70 Score=16.18 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=30.7
Q ss_pred eeccccCCCCCCchHHHHHHHhhcC--CeEEEEeCC---------cCeEEEccHHHHHHHHH
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYG--PLMSLRLGF---------VPTLIVSSAKMAKETLK 86 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~---------~~~v~v~dp~~~~~vl~ 86 (128)
++|++.. .-..+.+.+..++|| ++..+.+.. ...|-..+++.++..+.
T Consensus 5 ~V~nL~~---~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~ 63 (90)
T 3p5t_L 5 YIGNLTW---WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 63 (90)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHH
Confidence 4566543 233466788889999 766654321 25677788988888874
No 180
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=26.46 E-value=83 Score=16.94 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=38.3
Q ss_pred CCCCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---CcCeEEEccHHHHHHHHHh
Q 047568 31 PKGLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 31 p~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~v~dp~~~~~vl~~ 87 (128)
|...-++||++. .--.+.+.++..+||.+..+.+. +...|-..|.+.++.....
T Consensus 20 ps~~l~V~NLp~---~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLID---GVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCC---CCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 334567788753 23345678999999998887653 4578888899988888743
No 181
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.44 E-value=77 Score=16.62 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=36.7
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCC-eEEEEeC----------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGP-LMSLRLG----------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~----------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.+...+||+ +..+.+. +...|-..+++.++..+..
T Consensus 10 ~l~V~nLp~---~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 10 RLFIGGIPK---MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEEEECCCT---TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEEEeCCCC---cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 346677653 2344667888999998 8888764 2357788899999998854
No 182
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=26.36 E-value=1.1e+02 Score=18.52 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=36.5
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC----CcCeEEEccHHHHHHHHH
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG----FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~v~v~dp~~~~~vl~ 86 (128)
.-++||+... .--.+.+.++..+||++..+.+. +...|-..|++.++..+.
T Consensus 6 ~l~V~nL~~~--~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 6 VLMVYGLDQS--KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp EEEEECCCTT--TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCcc--cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 3466777521 22335688899999999888764 347888899999888774
No 183
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.28 E-value=89 Score=17.28 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=35.9
Q ss_pred Ccee--ccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---cCeEEEccHHHHHHHHHh
Q 047568 34 LPFI--GNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~--G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~v~v~dp~~~~~vl~~ 87 (128)
.-++ |++.. .-..+.+++..++||.+..+.+.. ...|-..|++.+++.+..
T Consensus 27 ~L~V~Ng~L~~---~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 27 SLVVANGGLGN---GVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp EEEEETCTGGG---TCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCCCC---CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 4566 55643 233467889999999988887642 357777899888888754
No 184
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=26.26 E-value=92 Score=17.45 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=33.8
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeC--------CcCeEEEccHHHHHHHHH
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG--------FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~v~dp~~~~~vl~ 86 (128)
++|+++. .-..+.+.+..++||++..+.+. +...|-..+++.++..+.
T Consensus 4 ~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~ 59 (166)
T 3md3_A 4 YVGNLDK---AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQ 59 (166)
T ss_dssp EEEEEET---TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHH
T ss_pred EECCCCC---cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHH
Confidence 3455542 22345678889999998877652 236888899999998883
No 185
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.16 E-value=93 Score=17.43 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=32.9
Q ss_pred eccccCCCCCCchHHHHHHHhhcCCeEEEEeC---C-cCeEEEccHHHHHHHHH
Q 047568 37 IGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---F-VPTLIVSSAKMAKETLK 86 (128)
Q Consensus 37 ~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~-~~~v~v~dp~~~~~vl~ 86 (128)
+|++.. .--.+.+.+++.+||.+..+.+. + ...|-..|++.+++...
T Consensus 30 V~NL~~---~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~ 80 (124)
T 2e5i_A 30 IQNPLY---PITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKA 80 (124)
T ss_dssp EESCCS---CCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHH
T ss_pred EcCcCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 577642 23346789999999998776542 3 37788888887776664
No 186
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.00 E-value=83 Score=16.81 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=37.0
Q ss_pred CCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---CcCeEEEccHHHHHHHHH
Q 047568 33 GLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 33 ~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~v~dp~~~~~vl~ 86 (128)
..-++|++.. .-..+.+.+++++||.+..+.+. +...|-..|.+.++..+.
T Consensus 16 ~~l~V~nLp~---~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 16 PVVHVRGLCE---SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp SEEEEESCCS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 3456788753 23446688999999998888753 346788889998888875
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=25.96 E-value=1.2e+02 Score=18.58 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=37.1
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC----CcCeEEEccHHHHHHHHH
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG----FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~v~v~dp~~~~~vl~ 86 (128)
-++|++... .-..+.+.++.++||++..+.+. +...|-..+++.++..+.
T Consensus 37 l~V~nLp~~--~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~ 90 (229)
T 2adc_A 37 LLVSNLNPE--RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 90 (229)
T ss_dssp EEEESCCTT--TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHH
T ss_pred EEEeCCCcc--cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 456777531 22346678889999999888764 447888899999998885
No 188
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.24 E-value=80 Score=16.40 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=37.3
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---------cCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---------VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.++.++||++..+.+.. ...|-..+++.++..+..
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 17 TVYVGGLDE---KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp EEEEECCCT---TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 456677753 234466888999999988877532 357888999999999864
No 189
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.04 E-value=81 Score=16.36 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=35.4
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---------cCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---------VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.++.++||++..+.+.. ..+|-..+++.++..+..
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 17 TIRVTNLSE---DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEEEESCCT---TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 346677753 233455777888999987776531 357888999999998863
No 190
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=24.82 E-value=1.2e+02 Score=18.08 Aligned_cols=48 Identities=13% Similarity=0.229 Sum_probs=35.3
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHH
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~ 86 (128)
++|++.. .-..+.+.++.++||++..+.+. +...|-..+++.++..+.
T Consensus 32 ~V~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 88 (216)
T 2qfj_A 32 YVGSIYY---ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 88 (216)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHH
T ss_pred EEECCCC---CCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHH
Confidence 5566643 23346688899999998888763 236788899999999886
No 191
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.79 E-value=81 Score=16.31 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=34.8
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.++.++||++..+.+. +...|-..+++.++..+..
T Consensus 10 ~l~V~nlp~---~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 10 SVFVGNIPY---EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp CEEEESCCT---TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred EEEEeCCCC---cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 345676642 23345678888999987666542 2357778899999998853
No 192
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=24.66 E-value=41 Score=12.88 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=8.6
Q ss_pred ccHHHHHHHHHh
Q 047568 76 SSAKMAKETLKA 87 (128)
Q Consensus 76 ~dp~~~~~vl~~ 87 (128)
++||+.+..+.+
T Consensus 12 sspellrrcldn 23 (26)
T 2plx_B 12 SSPELLRRCLDN 23 (26)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 578888887743
No 193
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.61 E-value=79 Score=16.07 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=34.9
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEE-EeC---------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSL-RLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.+..++||++..+ .+. +...|-..+++.++..+..
T Consensus 7 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 7 GIFIGNLDP---EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp EEEEECCCT---TCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 345677653 23346688889999987655 432 2357888999999999863
No 194
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=23.85 E-value=87 Score=16.30 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=36.2
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---------cCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---------VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.++.++||++..+.+.. ...|-..+++.++..+..
T Consensus 15 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 15 KLFIGQIPR---NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 346677753 234456888999999988876532 357778899998888853
No 195
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.55 E-value=91 Score=16.42 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=36.5
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. .-..+.+.++..+||++..+.+. +..+|-..+++.++..+..
T Consensus 27 ~l~V~nl~~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 27 TVYCGGIAS---GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp EEEEECCSS---CCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 345677653 23446678888999998888753 4467888999998888743
No 196
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=23.50 E-value=93 Score=16.53 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=37.2
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC---------cCeEEEccHHHHHHHHHhc
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF---------VPTLIVSSAKMAKETLKAH 88 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~v~v~dp~~~~~vl~~~ 88 (128)
.-++|++.. .-..+.+.+..++||++..+.+.. ...|...+++.++..+...
T Consensus 27 ~lfV~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 27 KMFIGGLSW---QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp CEEEESCCT---TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 456777753 233456788899999988877532 3578889999999988543
No 197
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=23.28 E-value=79 Score=15.64 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=34.6
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEe----------CCcCeEEEccHHHHHHHHHh
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRL----------GFVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~v~v~dp~~~~~vl~~ 87 (128)
++|++.. .-..+.+.+...+||++..+.+ -+...|-..+++.++..+..
T Consensus 8 ~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 8 HIGRLTR---NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp EEECCCT---TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH
Confidence 4566642 2344567888899999877764 23467888999999998863
No 198
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.25 E-value=90 Score=16.24 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=35.0
Q ss_pred CCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC----------CcCeEEEccHHHHHHHHH
Q 047568 33 GLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG----------FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 33 ~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~v~v~dp~~~~~vl~ 86 (128)
..-++|++.. .-..+.+.++.++|| +..+.+. +...|-..+++.++..+.
T Consensus 16 ~~l~V~nlp~---~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (104)
T 1wi8_A 16 YTAFLGNLPY---DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75 (104)
T ss_dssp EEEEEESCCS---SCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHG
T ss_pred CEEEEeCCCC---cCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHh
Confidence 3456777753 233456788888999 8787753 135788899999999883
No 199
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=22.78 E-value=97 Score=16.45 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=35.7
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHH
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~ 86 (128)
.-++|++.. .-..+.+.+..++||++..+.+. +...|-..+++.++..+.
T Consensus 28 ~l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 28 RLYVGSLHF---NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp EEEEECCCS---SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 345677753 23446678888999998777542 246788899999999885
No 200
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.62 E-value=95 Score=16.28 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=37.4
Q ss_pred CCceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 33 GLPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 33 ~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
..-++|++.. .-..+.+.+...+||++..+.+. +..+|-..+.+.++..+..
T Consensus 16 ~~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 16 KTVFIRNLSF---DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CCEEEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 3456788753 23446678888999998887754 2357788899999998854
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=22.61 E-value=1.1e+02 Score=16.90 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=39.6
Q ss_pred CCCceeccccCCC--CCCchHHHHHHHhhcCCeEEEEeC-------------CcCeEEEccHHHHHHHHHh-cCcccCCC
Q 047568 32 KGLPFIGNLHQFD--ASKPHVSFWELSKKYGPLMSLRLG-------------FVPTLIVSSAKMAKETLKA-HDLQFSGR 95 (128)
Q Consensus 32 ~~~~~~G~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~v~v~dp~~~~~vl~~-~~~~~~~~ 95 (128)
..+-++.|+..-. ..+..+-+.+.+.+||+|..+.+. +.-.|-..+++.++..... +...|.+|
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 3345666764321 244556778888899998777542 2345667788877776643 44555544
Q ss_pred C
Q 047568 96 P 96 (128)
Q Consensus 96 ~ 96 (128)
.
T Consensus 100 ~ 100 (118)
T 3ue2_A 100 K 100 (118)
T ss_dssp E
T ss_pred E
Confidence 3
No 202
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=22.53 E-value=1.2e+02 Score=17.28 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=36.9
Q ss_pred CceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC---------CcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG---------FVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~v~v~dp~~~~~vl~~ 87 (128)
.-+++++.. .-..+.+.++.++||+|..+.+. +..+|...+++.++.++..
T Consensus 41 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 41 TLYVGNLSF---YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp EEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 456677753 23346688899999998887652 1357888999999998864
No 203
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=22.36 E-value=99 Score=16.43 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=35.6
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHh
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~ 87 (128)
-++|++.. .-..+.+.+..++||++..+.+ -+...|-..+.+.++..+..
T Consensus 34 l~V~nLp~---~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~ 84 (108)
T 2jvo_A 34 LFVRPFPL---DVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEE 84 (108)
T ss_dssp EEECSSCT---TCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHH
T ss_pred EEEECCCC---CCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 35677643 2334668889999998877764 45577888899999888753
No 204
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=22.07 E-value=99 Score=16.30 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=35.2
Q ss_pred CceeccccCCCCC-CchHHHHHHHhhcCCeEEEEe-CCcCeEEEccHHHHHHHHHh
Q 047568 34 LPFIGNLHQFDAS-KPHVSFWELSKKYGPLMSLRL-GFVPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 34 ~~~~G~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~-~~~~~v~v~dp~~~~~vl~~ 87 (128)
.-++|++.. . -..+.+.++.++||++..+.+ -+..+|-..+++.++..+..
T Consensus 29 ~l~V~nl~~---~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 29 RVFIGNLNT---ALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp EEEECSCCC---SSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHH
T ss_pred EEEEeCCCc---ccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 346677643 2 345668889999998777765 33467777888888888743
No 205
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=21.45 E-value=1.2e+02 Score=17.13 Aligned_cols=50 Identities=18% Similarity=0.271 Sum_probs=34.5
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeCC--------cCeEEEccHHHHHHHHHh
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLGF--------VPTLIVSSAKMAKETLKA 87 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~v~v~dp~~~~~vl~~ 87 (128)
-+++++.. .-..+.+.+..++||++..+.+.. ...|-..+++.++..+..
T Consensus 98 l~v~nl~~---~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 98 LFIGMISK---KCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEcCCCC---cCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 34555542 233466888899999987776432 257888999999888854
No 206
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=21.40 E-value=1.3e+02 Score=17.59 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=35.0
Q ss_pred eeccccCCCCCCchHHHHHHHhhcCCeEEEEeC----CcCeEEEccHHHHHHHHH
Q 047568 36 FIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG----FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 36 ~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~v~v~dp~~~~~vl~ 86 (128)
++|++... .-..+.+.++.++||++..+.+. +...|-..+++.++..+.
T Consensus 7 ~v~nlp~~--~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~ 59 (198)
T 1qm9_A 7 LVSNLNPE--RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 59 (198)
T ss_dssp EEECCCSS--SCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHH
T ss_pred EEeCCCcc--cCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 45665431 22346678889999998887754 447888899999998885
No 207
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=20.89 E-value=1.1e+02 Score=16.28 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=27.6
Q ss_pred HHHHH-hhcCCeEEEEeCC--------cCeEEEccHHHHHHHHHh-cCcccCC
Q 047568 52 FWELS-KKYGPLMSLRLGF--------VPTLIVSSAKMAKETLKA-HDLQFSG 94 (128)
Q Consensus 52 ~~~~~-~~~g~~~~~~~~~--------~~~v~v~dp~~~~~vl~~-~~~~~~~ 94 (128)
+.+.+ ++||++..+.+.. ...|-..+++.++..... +...+.+
T Consensus 43 l~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G 95 (104)
T 1jmt_A 43 VFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95 (104)
T ss_dssp HHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred HHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 34445 8999998887642 346667788888777643 3333433
No 208
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=20.29 E-value=47 Score=17.29 Aligned_cols=49 Identities=8% Similarity=0.164 Sum_probs=33.8
Q ss_pred ceeccccCCCCCCchHHHHHHHhhcCCeEEEEeC--------CcCeEEEccHHHHHHHHH
Q 047568 35 PFIGNLHQFDASKPHVSFWELSKKYGPLMSLRLG--------FVPTLIVSSAKMAKETLK 86 (128)
Q Consensus 35 ~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~v~v~dp~~~~~vl~ 86 (128)
-++|++.. .-..+.+.+...+||++..+.+. +...|-..+++.++..+.
T Consensus 12 l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 12 VFVGGIDV---RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred EEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 45677643 23446678889999998777642 235677778888888875
Done!