Query 047571
Match_columns 681
No_of_seqs 655 out of 3109
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 12:21:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4.1E-90 9E-95 758.6 70.2 608 67-679 46-653 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.1E-81 2.4E-86 691.9 64.4 575 69-651 149-726 (857)
3 PLN03218 maturation of RBCL 1; 100.0 4.6E-69 9.9E-74 578.0 59.8 530 104-680 367-909 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 2.3E-68 4.9E-73 572.4 57.6 474 71-549 86-563 (697)
5 PLN03081 pentatricopeptide (PP 100.0 1.1E-67 2.3E-72 567.2 54.2 471 172-648 86-560 (697)
6 PLN03218 maturation of RBCL 1; 100.0 1E-66 2.2E-71 559.9 56.9 529 67-616 365-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.5E-35 1.2E-39 331.5 64.9 594 67-678 290-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.3E-33 5E-38 318.2 65.0 601 61-679 216-865 (899)
9 PRK11447 cellulose synthase su 100.0 6.9E-26 1.5E-30 256.0 58.7 604 59-677 49-737 (1157)
10 PRK11447 cellulose synthase su 100.0 2.3E-23 5E-28 235.6 63.9 594 72-679 28-699 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.1E-21 2.4E-26 211.3 59.4 570 83-678 55-704 (987)
12 PRK09782 bacteriophage N4 rece 99.9 2.2E-20 4.7E-25 201.4 58.8 585 58-678 64-738 (987)
13 KOG4422 Uncharacterized conser 99.9 1.2E-17 2.7E-22 152.7 40.5 442 57-544 101-591 (625)
14 KOG2002 TPR-containing nuclear 99.9 9.1E-17 2E-21 162.1 45.0 544 88-642 146-743 (1018)
15 KOG2002 TPR-containing nuclear 99.8 1.4E-16 3.1E-21 160.7 43.7 536 61-609 153-745 (1018)
16 KOG4626 O-linked N-acetylgluco 99.8 7.6E-18 1.6E-22 161.1 32.5 432 75-589 51-499 (966)
17 PRK11788 tetratricopeptide rep 99.8 1.6E-18 3.4E-23 175.4 29.3 291 356-651 44-353 (389)
18 PRK11788 tetratricopeptide rep 99.8 4.8E-18 1E-22 171.8 30.9 292 284-616 43-354 (389)
19 KOG4626 O-linked N-acetylgluco 99.8 1.6E-17 3.5E-22 158.9 30.8 367 278-661 118-500 (966)
20 TIGR00990 3a0801s09 mitochondr 99.8 4.2E-16 9.1E-21 165.9 41.3 249 391-643 307-570 (615)
21 TIGR00990 3a0801s09 mitochondr 99.8 2.9E-16 6.4E-21 167.1 38.8 420 246-678 128-569 (615)
22 KOG4422 Uncharacterized conser 99.8 7.3E-15 1.6E-19 134.8 39.3 424 173-643 116-589 (625)
23 PRK15174 Vi polysaccharide exp 99.8 3.5E-16 7.5E-21 165.7 35.5 325 311-644 42-381 (656)
24 PRK10049 pgaA outer membrane p 99.8 1E-14 2.2E-19 158.2 44.8 394 180-644 22-456 (765)
25 PRK10049 pgaA outer membrane p 99.8 2.2E-15 4.9E-20 163.2 38.9 389 250-678 20-454 (765)
26 PRK15174 Vi polysaccharide exp 99.8 2.3E-15 4.9E-20 159.5 37.9 321 282-609 48-381 (656)
27 PRK14574 hmsH outer membrane p 99.8 4.7E-14 1E-18 149.7 44.3 424 219-677 43-510 (822)
28 PRK14574 hmsH outer membrane p 99.8 3.7E-13 8.1E-18 142.9 49.2 448 67-608 29-512 (822)
29 KOG2076 RNA polymerase III tra 99.8 1.4E-12 2.9E-17 131.6 50.0 592 79-676 146-891 (895)
30 KOG2003 TPR repeat-containing 99.7 2.7E-14 5.9E-19 131.9 30.9 478 109-630 203-709 (840)
31 KOG4318 Bicoid mRNA stability 99.7 4.5E-14 9.7E-19 141.2 34.5 253 93-362 11-286 (1088)
32 KOG0495 HAT repeat protein [RN 99.7 3.8E-11 8.2E-16 116.7 50.6 442 219-677 415-877 (913)
33 KOG2003 TPR repeat-containing 99.7 2.7E-13 5.8E-18 125.5 33.7 455 190-676 216-718 (840)
34 KOG2076 RNA polymerase III tra 99.7 8.8E-11 1.9E-15 118.9 49.4 567 105-681 137-850 (895)
35 KOG0495 HAT repeat protein [RN 99.7 1.2E-10 2.6E-15 113.3 47.0 441 221-679 387-845 (913)
36 KOG4318 Bicoid mRNA stability 99.7 3.2E-13 6.8E-18 135.3 30.4 252 197-463 12-286 (1088)
37 PRK10747 putative protoheme IX 99.6 2.3E-12 4.9E-17 128.7 29.8 278 391-677 97-387 (398)
38 TIGR00540 hemY_coli hemY prote 99.6 3.6E-12 7.9E-17 128.1 29.9 284 389-676 95-395 (409)
39 KOG1915 Cell cycle control pro 99.5 4.8E-09 1.1E-13 98.5 41.6 262 412-679 321-624 (677)
40 KOG2047 mRNA splicing factor [ 99.5 2.1E-08 4.6E-13 97.9 47.4 555 71-675 101-718 (835)
41 KOG1155 Anaphase-promoting com 99.5 6.7E-10 1.5E-14 104.0 35.8 287 386-675 235-531 (559)
42 PF13429 TPR_15: Tetratricopep 99.5 1.2E-13 2.5E-18 132.0 11.7 254 385-677 15-274 (280)
43 PF13429 TPR_15: Tetratricopep 99.5 6.4E-14 1.4E-18 133.7 9.0 218 453-678 13-241 (280)
44 PRK10747 putative protoheme IX 99.5 7.4E-11 1.6E-15 118.0 29.5 289 182-507 91-389 (398)
45 KOG1915 Cell cycle control pro 99.5 4.8E-09 1E-13 98.5 38.0 411 258-678 86-534 (677)
46 KOG1155 Anaphase-promoting com 99.5 1.2E-09 2.7E-14 102.2 34.0 192 450-643 332-535 (559)
47 COG3071 HemY Uncharacterized e 99.5 1.9E-10 4E-15 106.0 28.3 280 390-677 96-387 (400)
48 KOG1126 DNA-binding cell divis 99.4 4.5E-11 9.7E-16 117.1 21.9 269 394-672 335-612 (638)
49 TIGR00540 hemY_coli hemY prote 99.4 7.7E-10 1.7E-14 111.3 30.8 295 179-507 88-398 (409)
50 COG3071 HemY Uncharacterized e 99.4 4.1E-09 8.9E-14 97.3 31.7 299 179-512 88-394 (400)
51 KOG0547 Translocase of outer m 99.4 1.2E-08 2.5E-13 96.5 33.4 213 425-643 338-565 (606)
52 KOG2047 mRNA splicing factor [ 99.4 1E-07 2.3E-12 93.3 40.4 291 348-643 249-614 (835)
53 KOG1126 DNA-binding cell divis 99.3 4E-10 8.7E-15 110.6 22.8 192 445-643 418-619 (638)
54 KOG1173 Anaphase-promoting com 99.3 1.4E-08 3E-13 97.9 31.9 453 176-661 19-532 (611)
55 KOG0547 Translocase of outer m 99.3 1E-08 2.2E-13 96.9 30.1 400 75-505 118-563 (606)
56 COG2956 Predicted N-acetylgluc 99.3 3.8E-09 8.1E-14 94.5 25.7 153 455-608 114-277 (389)
57 KOG1173 Anaphase-promoting com 99.3 3.3E-08 7.1E-13 95.4 33.4 504 69-625 13-532 (611)
58 COG2956 Predicted N-acetylgluc 99.3 2.3E-09 4.9E-14 95.8 23.9 216 427-644 49-278 (389)
59 PF13041 PPR_2: PPR repeat fam 99.3 1.4E-11 3.1E-16 81.4 6.5 50 477-526 1-50 (50)
60 PF13041 PPR_2: PPR repeat fam 99.2 2.5E-11 5.4E-16 80.3 6.6 50 578-627 1-50 (50)
61 KOG2376 Signal recognition par 99.2 4.3E-07 9.3E-12 88.4 37.2 176 462-641 321-517 (652)
62 TIGR02521 type_IV_pilW type IV 99.2 3.1E-09 6.7E-14 99.2 23.0 191 483-678 35-230 (234)
63 KOG1156 N-terminal acetyltrans 99.2 3E-07 6.4E-12 90.4 36.2 440 223-678 20-509 (700)
64 KOG1174 Anaphase-promoting com 99.2 2.7E-07 5.9E-12 85.6 33.6 263 342-609 227-500 (564)
65 KOG2376 Signal recognition par 99.2 5.2E-07 1.1E-11 87.8 35.8 433 190-679 27-519 (652)
66 KOG3616 Selective LIM binding 99.2 2.1E-06 4.6E-11 85.5 40.3 138 217-373 739-876 (1636)
67 TIGR02521 type_IV_pilW type IV 99.2 4.5E-09 9.7E-14 98.1 21.6 194 448-643 31-231 (234)
68 KOG3616 Selective LIM binding 99.2 8.7E-07 1.9E-11 88.2 36.5 399 215-676 562-962 (1636)
69 KOG3785 Uncharacterized conser 99.2 4E-06 8.7E-11 76.4 37.4 404 79-505 29-454 (557)
70 COG3063 PilF Tfp pilus assembl 99.1 1.9E-08 4.1E-13 85.9 20.0 192 482-678 38-234 (250)
71 PF12569 NARP1: NMDA receptor- 99.1 7.7E-08 1.7E-12 97.1 28.1 175 498-677 130-331 (517)
72 KOG1156 N-terminal acetyltrans 99.1 4.9E-06 1.1E-10 82.2 39.0 447 109-607 10-509 (700)
73 KOG1129 TPR repeat-containing 99.1 4E-09 8.7E-14 94.3 16.4 223 382-608 227-457 (478)
74 KOG3785 Uncharacterized conser 99.1 2.4E-07 5.1E-12 84.1 27.7 448 180-655 29-498 (557)
75 KOG3617 WD40 and TPR repeat-co 99.1 5.7E-06 1.2E-10 83.7 39.4 507 74-644 759-1359(1416)
76 KOG1129 TPR repeat-containing 99.1 4.1E-09 9E-14 94.2 15.4 223 418-677 228-455 (478)
77 KOG0985 Vesicle coat protein c 99.1 2.3E-05 4.9E-10 81.3 43.3 277 377-676 983-1304(1666)
78 PRK12370 invasion protein regu 99.1 3.5E-08 7.5E-13 103.5 24.1 178 393-575 276-467 (553)
79 KOG1840 Kinesin light chain [C 99.1 2E-08 4.2E-13 100.0 20.8 190 453-642 246-477 (508)
80 KOG0985 Vesicle coat protein c 99.1 3.8E-05 8.1E-10 79.8 45.1 126 248-373 609-750 (1666)
81 KOG4162 Predicted calmodulin-b 99.1 1.1E-05 2.3E-10 81.6 38.9 479 84-643 239-782 (799)
82 KOG3617 WD40 and TPR repeat-co 99.0 9.9E-06 2.2E-10 82.0 38.3 84 310-405 911-994 (1416)
83 PRK12370 invasion protein regu 99.0 4.1E-08 8.9E-13 102.9 23.4 237 428-673 276-529 (553)
84 KOG4162 Predicted calmodulin-b 99.0 4E-05 8.7E-10 77.6 39.7 397 240-677 318-780 (799)
85 KOG1840 Kinesin light chain [C 99.0 1.3E-07 2.8E-12 94.3 21.4 202 72-301 199-434 (508)
86 KOG4340 Uncharacterized conser 98.9 3.3E-06 7.2E-11 75.0 26.2 320 75-404 13-372 (459)
87 KOG1127 TPR repeat-containing 98.9 2.4E-05 5.3E-10 81.2 36.0 547 88-643 474-1103(1238)
88 PF12569 NARP1: NMDA receptor- 98.9 1.3E-06 2.8E-11 88.4 26.5 284 354-643 11-333 (517)
89 KOG1174 Anaphase-promoting com 98.9 6.5E-05 1.4E-09 70.3 35.4 299 205-508 189-500 (564)
90 KOG1127 TPR repeat-containing 98.9 3.7E-05 8E-10 79.9 36.0 546 122-680 473-1104(1238)
91 PRK11189 lipoprotein NlpI; Pro 98.8 2.7E-06 5.9E-11 81.4 25.0 116 392-508 40-161 (296)
92 PRK11189 lipoprotein NlpI; Pro 98.8 7.8E-07 1.7E-11 85.1 21.3 234 425-666 38-286 (296)
93 PF04733 Coatomer_E: Coatomer 98.8 2.8E-07 6.1E-12 86.6 17.3 126 549-677 131-262 (290)
94 cd05804 StaR_like StaR_like; a 98.8 2.7E-05 5.9E-10 77.7 30.6 253 423-677 53-333 (355)
95 COG3063 PilF Tfp pilus assembl 98.7 7.2E-06 1.6E-10 70.6 20.7 187 380-570 37-228 (250)
96 cd05804 StaR_like StaR_like; a 98.7 2.5E-05 5.4E-10 78.0 28.2 254 387-643 52-335 (355)
97 PRK04841 transcriptional regul 98.6 0.0022 4.7E-08 73.1 46.1 257 387-643 461-759 (903)
98 PRK04841 transcriptional regul 98.6 0.00036 7.7E-09 79.4 39.2 322 357-678 384-758 (903)
99 PF12854 PPR_1: PPR repeat 98.6 5E-08 1.1E-12 57.5 4.2 33 646-678 2-34 (34)
100 KOG4340 Uncharacterized conser 98.6 0.00013 2.7E-09 65.3 26.3 235 360-607 125-373 (459)
101 PF04733 Coatomer_E: Coatomer 98.6 2.7E-06 5.8E-11 80.1 16.8 152 354-513 109-268 (290)
102 PF12854 PPR_1: PPR repeat 98.6 8.6E-08 1.9E-12 56.5 4.2 34 609-642 1-34 (34)
103 KOG0548 Molecular co-chaperone 98.6 0.00026 5.6E-09 69.0 29.2 234 381-627 227-471 (539)
104 KOG1125 TPR repeat-containing 98.5 1.5E-05 3.3E-10 77.9 20.5 245 425-674 297-565 (579)
105 KOG1128 Uncharacterized conser 98.5 5.6E-06 1.2E-10 83.0 16.1 219 444-680 394-616 (777)
106 TIGR03302 OM_YfiO outer membra 98.4 1.7E-05 3.7E-10 73.7 16.8 182 477-678 31-230 (235)
107 KOG1914 mRNA cleavage and poly 98.3 0.0036 7.9E-08 61.3 35.4 167 495-662 347-521 (656)
108 KOG3081 Vesicle coat complex C 98.3 0.0002 4.4E-09 63.2 20.4 135 488-629 117-255 (299)
109 KOG1070 rRNA processing protei 98.3 0.00014 3E-09 78.6 22.8 218 414-632 1459-1688(1710)
110 COG5010 TadD Flp pilus assembl 98.3 0.0001 2.2E-09 65.1 18.4 122 549-674 100-225 (257)
111 KOG1128 Uncharacterized conser 98.3 7.2E-05 1.6E-09 75.4 19.6 227 418-662 403-634 (777)
112 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.4E-05 5.2E-10 76.2 15.4 125 552-680 172-297 (395)
113 PRK15359 type III secretion sy 98.3 1.6E-05 3.4E-10 66.6 12.2 104 535-643 14-120 (144)
114 KOG0624 dsRNA-activated protei 98.2 0.0015 3.3E-08 59.9 24.3 91 351-443 42-136 (504)
115 KOG1070 rRNA processing protei 98.2 0.00024 5.3E-09 76.8 22.4 217 445-666 1455-1686(1710)
116 KOG0624 dsRNA-activated protei 98.2 0.0021 4.5E-08 59.1 25.1 301 281-610 43-371 (504)
117 TIGR03302 OM_YfiO outer membra 98.2 8.7E-05 1.9E-09 68.9 17.7 185 445-644 30-232 (235)
118 PRK10370 formate-dependent nit 98.2 0.00011 2.3E-09 65.4 17.1 122 527-652 52-179 (198)
119 KOG0548 Molecular co-chaperone 98.2 0.0027 6E-08 62.1 26.1 215 416-643 227-454 (539)
120 PLN02789 farnesyltranstransfer 98.2 0.00093 2E-08 64.0 23.1 226 380-641 39-299 (320)
121 PRK10370 formate-dependent nit 98.2 0.00011 2.4E-09 65.3 15.8 114 562-679 52-172 (198)
122 COG4783 Putative Zn-dependent 98.2 0.00059 1.3E-08 66.0 21.3 134 489-644 316-454 (484)
123 PRK15359 type III secretion sy 98.2 4.3E-05 9.4E-10 64.0 12.5 89 585-676 29-117 (144)
124 PLN02789 farnesyltranstransfer 98.2 0.00061 1.3E-08 65.2 21.4 125 549-677 142-299 (320)
125 KOG1125 TPR repeat-containing 98.1 0.00022 4.8E-09 70.0 17.8 139 499-638 414-565 (579)
126 TIGR00756 PPR pentatricopeptid 98.1 5.2E-06 1.1E-10 50.0 4.5 34 480-513 1-34 (35)
127 PRK15179 Vi polysaccharide bio 98.1 0.00015 3.3E-09 76.8 17.9 128 546-676 83-213 (694)
128 TIGR00756 PPR pentatricopeptid 98.1 5.7E-06 1.2E-10 49.8 4.5 35 277-311 1-35 (35)
129 PF09976 TPR_21: Tetratricopep 98.1 0.0001 2.2E-09 62.1 13.3 112 562-676 24-143 (145)
130 PF13812 PPR_3: Pentatricopept 98.1 7.1E-06 1.5E-10 48.9 4.3 33 480-512 2-34 (34)
131 KOG3081 Vesicle coat complex C 98.1 0.0023 5E-08 56.8 21.0 82 424-508 148-236 (299)
132 PRK15179 Vi polysaccharide bio 98.0 0.0009 2E-08 71.0 22.0 128 478-608 85-216 (694)
133 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.3E-10 48.2 4.5 34 276-309 1-34 (34)
134 PRK14720 transcript cleavage f 98.0 0.0017 3.7E-08 69.7 23.3 151 209-389 115-268 (906)
135 COG5010 TadD Flp pilus assembl 98.0 0.00049 1.1E-08 61.0 16.0 154 452-639 70-226 (257)
136 PRK14720 transcript cleavage f 98.0 0.0012 2.7E-08 70.8 22.2 235 377-662 30-268 (906)
137 KOG3060 Uncharacterized conser 98.0 0.0016 3.4E-08 57.3 18.7 178 461-643 25-219 (289)
138 TIGR02552 LcrH_SycD type III s 98.0 9.9E-05 2.1E-09 61.6 10.9 94 549-643 17-113 (135)
139 COG4783 Putative Zn-dependent 98.0 0.00048 1E-08 66.6 16.3 173 462-639 251-432 (484)
140 KOG2053 Mitochondrial inherita 98.0 0.037 8.1E-07 58.0 40.4 92 552-644 439-536 (932)
141 KOG1914 mRNA cleavage and poly 97.9 0.034 7.3E-07 54.8 33.1 79 104-184 17-97 (656)
142 PF04840 Vps16_C: Vps16, C-ter 97.9 0.023 4.9E-07 54.4 25.9 107 551-674 179-285 (319)
143 KOG2053 Mitochondrial inherita 97.8 0.057 1.2E-06 56.7 45.5 218 82-306 19-256 (932)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00047 1E-08 67.4 13.8 85 555-641 206-294 (395)
145 PF08579 RPM2: Mitochondrial r 97.8 0.00025 5.5E-09 53.7 9.1 80 75-154 28-116 (120)
146 TIGR02552 LcrH_SycD type III s 97.8 0.00028 6E-09 58.9 10.4 105 63-169 8-112 (135)
147 PF08579 RPM2: Mitochondrial r 97.8 0.00045 9.7E-09 52.4 9.9 88 110-222 28-116 (120)
148 PF01535 PPR: PPR repeat; Int 97.8 3.8E-05 8.3E-10 44.5 3.5 31 480-510 1-31 (31)
149 PF09976 TPR_21: Tetratricopep 97.7 0.0013 2.9E-08 55.3 14.3 54 585-640 90-143 (145)
150 PF12895 Apc3: Anaphase-promot 97.7 0.0001 2.3E-09 55.1 6.1 80 593-676 2-83 (84)
151 PF14938 SNAP: Soluble NSF att 97.7 0.022 4.9E-07 54.2 23.2 99 582-680 157-266 (282)
152 PF01535 PPR: PPR repeat; Int 97.7 6E-05 1.3E-09 43.7 3.5 31 277-307 1-31 (31)
153 cd00189 TPR Tetratricopeptide 97.7 0.00058 1.3E-08 52.6 10.3 93 583-678 3-95 (100)
154 KOG3060 Uncharacterized conser 97.6 0.01 2.2E-07 52.4 17.9 184 424-609 23-220 (289)
155 PF07079 DUF1347: Protein of u 97.6 0.072 1.6E-06 51.5 40.8 66 583-656 463-530 (549)
156 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0013 2.9E-08 53.2 11.9 95 550-644 3-105 (119)
157 KOG2041 WD40 repeat protein [G 97.6 0.11 2.5E-06 52.8 27.0 214 190-437 678-902 (1189)
158 KOG2280 Vacuolar assembly/sort 97.6 0.13 2.9E-06 53.0 28.6 97 203-300 425-531 (829)
159 COG4700 Uncharacterized protei 97.5 0.022 4.7E-07 47.8 17.6 131 511-643 86-221 (251)
160 PF10037 MRP-S27: Mitochondria 97.5 0.0009 2E-08 65.7 11.2 118 344-461 63-186 (429)
161 PF04840 Vps16_C: Vps16, C-ter 97.5 0.098 2.1E-06 50.2 27.4 106 450-571 179-284 (319)
162 PRK15363 pathogenicity island 97.5 0.0019 4E-08 53.3 11.0 96 550-646 36-134 (157)
163 PF06239 ECSIT: Evolutionarily 97.5 0.0016 3.5E-08 56.3 10.6 117 105-238 45-167 (228)
164 PRK10866 outer membrane biogen 97.5 0.079 1.7E-06 48.8 22.5 58 620-677 180-238 (243)
165 KOG1538 Uncharacterized conser 97.4 0.01 2.2E-07 59.4 16.9 196 292-509 616-847 (1081)
166 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0025 5.5E-08 51.5 11.3 95 582-677 4-102 (119)
167 PF07079 DUF1347: Protein of u 97.4 0.14 3E-06 49.6 36.3 195 480-679 299-523 (549)
168 PF12688 TPR_5: Tetratrico pep 97.4 0.0039 8.5E-08 49.6 11.6 89 586-674 7-98 (120)
169 PF10037 MRP-S27: Mitochondria 97.4 0.0034 7.4E-08 61.8 13.5 120 509-628 61-186 (429)
170 KOG1538 Uncharacterized conser 97.4 0.026 5.7E-07 56.7 19.1 55 381-438 601-657 (1081)
171 cd00189 TPR Tetratricopeptide 97.3 0.0015 3.2E-08 50.2 8.8 91 552-643 3-96 (100)
172 PRK15363 pathogenicity island 97.3 0.0051 1.1E-07 50.8 11.7 89 584-677 39-129 (157)
173 PF06239 ECSIT: Evolutionarily 97.3 0.0029 6.3E-08 54.8 10.3 97 367-463 34-153 (228)
174 PRK02603 photosystem I assembl 97.3 0.0054 1.2E-07 53.4 12.3 133 69-225 32-166 (172)
175 PF14938 SNAP: Soluble NSF att 97.3 0.08 1.7E-06 50.4 21.0 106 380-485 157-274 (282)
176 PF05843 Suf: Suppressor of fo 97.2 0.0034 7.3E-08 59.4 11.2 128 515-644 2-136 (280)
177 PRK10866 outer membrane biogen 97.2 0.086 1.9E-06 48.6 19.9 171 457-642 41-239 (243)
178 PLN03088 SGT1, suppressor of 97.2 0.0044 9.6E-08 61.0 11.7 89 555-644 8-99 (356)
179 PRK10803 tol-pal system protei 97.2 0.0055 1.2E-07 56.9 11.5 84 591-676 154-242 (263)
180 KOG2041 WD40 repeat protein [G 97.2 0.26 5.6E-06 50.4 23.2 60 482-541 1024-1084(1189)
181 KOG0553 TPR repeat-containing 97.1 0.0026 5.6E-08 57.8 8.4 98 558-660 90-191 (304)
182 PF12688 TPR_5: Tetratrico pep 97.1 0.012 2.6E-07 46.8 11.3 93 75-167 4-100 (120)
183 KOG2280 Vacuolar assembly/sort 97.1 0.47 1E-05 49.2 32.7 111 547-673 682-792 (829)
184 PF13432 TPR_16: Tetratricopep 97.1 0.0023 5E-08 44.9 6.5 58 586-644 3-60 (65)
185 PF12895 Apc3: Anaphase-promot 97.1 0.00084 1.8E-08 50.2 4.4 81 85-167 2-83 (84)
186 PF05843 Suf: Suppressor of fo 97.1 0.012 2.6E-07 55.8 13.2 142 480-625 2-150 (280)
187 PF14559 TPR_19: Tetratricopep 97.0 0.0028 6E-08 45.0 6.5 61 591-655 2-62 (68)
188 PLN03088 SGT1, suppressor of 97.0 0.011 2.3E-07 58.3 12.6 98 521-621 9-109 (356)
189 CHL00033 ycf3 photosystem I as 96.9 0.017 3.7E-07 50.1 12.1 91 582-675 37-137 (168)
190 COG4700 Uncharacterized protei 96.9 0.048 1E-06 45.8 13.4 125 544-673 84-215 (251)
191 PRK02603 photosystem I assembl 96.9 0.029 6.3E-07 48.9 12.8 90 378-468 35-126 (172)
192 PF13414 TPR_11: TPR repeat; P 96.8 0.0047 1E-07 44.0 6.5 63 580-643 3-66 (69)
193 CHL00033 ycf3 photosystem I as 96.8 0.041 8.9E-07 47.7 13.6 91 72-163 35-134 (168)
194 PRK10153 DNA-binding transcrip 96.8 0.083 1.8E-06 54.6 17.4 71 580-655 420-490 (517)
195 COG3898 Uncharacterized membra 96.8 0.52 1.1E-05 44.9 28.1 239 425-677 132-389 (531)
196 KOG0553 TPR repeat-containing 96.8 0.012 2.7E-07 53.5 9.8 99 522-623 89-190 (304)
197 PF13432 TPR_16: Tetratricopep 96.7 0.0063 1.4E-07 42.7 6.4 55 621-678 3-58 (65)
198 PF14559 TPR_19: Tetratricopep 96.7 0.0032 6.9E-08 44.7 4.9 52 626-679 2-53 (68)
199 PRK10153 DNA-binding transcrip 96.7 0.044 9.6E-07 56.6 14.5 82 596-680 400-482 (517)
200 KOG0550 Molecular chaperone (D 96.7 0.1 2.3E-06 49.8 15.2 151 488-643 178-349 (486)
201 KOG2796 Uncharacterized conser 96.6 0.12 2.5E-06 46.2 14.4 129 481-609 179-315 (366)
202 KOG1130 Predicted G-alpha GTPa 96.6 0.036 7.8E-07 52.6 11.8 94 582-675 237-339 (639)
203 KOG1920 IkappaB kinase complex 96.6 0.4 8.6E-06 52.5 20.6 150 462-639 894-1050(1265)
204 PF13281 DUF4071: Domain of un 96.5 0.24 5.1E-06 48.1 17.2 32 613-644 303-334 (374)
205 PF13424 TPR_12: Tetratricopep 96.5 0.0078 1.7E-07 44.1 5.9 62 616-677 6-72 (78)
206 PF13414 TPR_11: TPR repeat; P 96.5 0.0056 1.2E-07 43.6 4.9 63 614-679 2-66 (69)
207 PF13371 TPR_9: Tetratricopept 96.5 0.012 2.6E-07 42.5 6.5 56 588-644 3-58 (73)
208 PF13525 YfiO: Outer membrane 96.5 0.62 1.3E-05 41.8 19.0 87 582-672 112-199 (203)
209 KOG2796 Uncharacterized conser 96.4 0.18 3.9E-06 45.1 14.3 138 380-519 179-324 (366)
210 COG4235 Cytochrome c biogenesi 96.3 0.16 3.4E-06 46.9 14.1 98 546-644 153-256 (287)
211 COG3898 Uncharacterized membra 96.3 1 2.2E-05 43.0 27.7 273 360-644 97-392 (531)
212 PF03704 BTAD: Bacterial trans 96.3 0.032 7E-07 47.0 9.2 73 582-655 64-140 (146)
213 PF13525 YfiO: Outer membrane 96.3 0.29 6.4E-06 43.9 15.8 68 71-138 4-73 (203)
214 KOG0550 Molecular chaperone (D 96.3 1.1 2.3E-05 43.3 19.4 165 422-609 178-350 (486)
215 KOG3941 Intermediate in Toll s 96.3 0.029 6.3E-07 50.4 8.7 97 62-158 57-174 (406)
216 PF12921 ATP13: Mitochondrial 96.3 0.018 3.9E-07 46.4 6.9 53 610-662 47-99 (126)
217 COG1729 Uncharacterized protei 96.2 0.077 1.7E-06 48.1 11.1 95 582-678 144-242 (262)
218 PF10300 DUF3808: Protein of u 96.1 0.15 3.2E-06 52.4 14.5 117 562-680 246-376 (468)
219 PF09205 DUF1955: Domain of un 96.1 0.5 1.1E-05 37.5 14.7 141 489-648 12-152 (161)
220 COG4235 Cytochrome c biogenesi 96.1 0.088 1.9E-06 48.4 11.2 100 578-680 154-256 (287)
221 PRK10803 tol-pal system protei 96.1 0.06 1.3E-06 50.1 10.5 92 552-644 146-246 (263)
222 KOG3941 Intermediate in Toll s 96.0 0.054 1.2E-06 48.8 9.0 109 163-271 55-185 (406)
223 PF03704 BTAD: Bacterial trans 95.9 0.066 1.4E-06 45.1 9.4 72 74-146 64-140 (146)
224 PF13424 TPR_12: Tetratricopep 95.8 0.015 3.3E-07 42.6 4.4 62 582-643 7-74 (78)
225 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.3 6.6E-06 48.1 14.1 70 65-136 68-141 (453)
226 PF13371 TPR_9: Tetratricopept 95.8 0.024 5.2E-07 40.8 5.2 55 622-679 2-57 (73)
227 PF13281 DUF4071: Domain of un 95.7 1 2.2E-05 43.9 16.9 30 580-609 305-334 (374)
228 PF04053 Coatomer_WDAD: Coatom 95.5 0.53 1.1E-05 47.6 15.2 74 557-641 326-399 (443)
229 PRK11906 transcriptional regul 95.4 0.63 1.4E-05 46.1 14.7 113 495-608 274-400 (458)
230 PF12921 ATP13: Mitochondrial 95.4 0.19 4E-06 40.6 9.4 50 509-558 47-97 (126)
231 COG5107 RNA14 Pre-mRNA 3'-end 95.4 3 6.5E-05 40.8 26.5 126 517-644 400-531 (660)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.14 3E-06 50.4 9.8 61 581-643 76-140 (453)
233 PRK15331 chaperone protein Sic 95.3 0.21 4.5E-06 41.8 9.4 85 558-643 46-133 (165)
234 smart00299 CLH Clathrin heavy 95.1 1.3 2.9E-05 36.8 14.3 117 527-663 20-137 (140)
235 KOG1130 Predicted G-alpha GTPa 95.0 0.16 3.4E-06 48.5 8.8 54 78-132 23-80 (639)
236 COG4649 Uncharacterized protei 94.8 0.64 1.4E-05 38.9 10.7 133 515-649 60-200 (221)
237 KOG2610 Uncharacterized conser 94.6 1.4 3.1E-05 41.1 13.6 150 491-641 115-273 (491)
238 COG4785 NlpI Lipoprotein NlpI, 94.6 0.9 1.9E-05 39.6 11.6 76 61-137 88-163 (297)
239 KOG4555 TPR repeat-containing 94.6 0.55 1.2E-05 37.1 9.4 87 557-643 51-143 (175)
240 PF04053 Coatomer_WDAD: Coatom 94.6 1.3 2.9E-05 44.7 15.0 133 387-543 270-402 (443)
241 PF04097 Nic96: Nup93/Nic96; 94.5 8.1 0.00018 41.5 23.0 87 385-476 265-355 (613)
242 PF08631 SPO22: Meiosis protei 94.5 4.5 9.8E-05 38.4 24.5 127 549-675 121-270 (278)
243 KOG1920 IkappaB kinase complex 94.5 6.4 0.00014 43.8 20.1 173 486-675 858-1050(1265)
244 PRK15331 chaperone protein Sic 94.5 0.23 5.1E-06 41.5 7.7 81 592-675 49-129 (165)
245 PF13512 TPR_18: Tetratricopep 94.4 1.3 2.7E-05 36.3 11.7 85 70-154 8-94 (142)
246 COG3118 Thioredoxin domain-con 94.3 4.4 9.5E-05 37.6 17.5 140 524-668 144-289 (304)
247 KOG0543 FKBP-type peptidyl-pro 94.3 0.51 1.1E-05 45.4 10.6 93 581-677 258-352 (397)
248 KOG2114 Vacuolar assembly/sort 94.2 9.2 0.0002 40.9 21.8 215 71-302 282-516 (933)
249 PRK11906 transcriptional regul 93.9 0.92 2E-05 44.9 11.8 144 529-675 273-431 (458)
250 PF10300 DUF3808: Protein of u 93.7 3.7 8E-05 42.3 16.5 85 556-641 274-373 (468)
251 PF09205 DUF1955: Domain of un 93.7 3 6.5E-05 33.3 11.8 136 389-545 13-151 (161)
252 PRK09687 putative lyase; Provi 93.6 6.7 0.00015 37.1 25.0 216 410-643 34-262 (280)
253 KOG1941 Acetylcholine receptor 93.5 1.2 2.6E-05 42.1 11.1 220 423-642 16-273 (518)
254 PF13428 TPR_14: Tetratricopep 93.5 0.31 6.7E-06 30.6 5.4 39 582-621 3-41 (44)
255 KOG1941 Acetylcholine receptor 93.4 2.2 4.7E-05 40.5 12.5 221 388-608 16-274 (518)
256 KOG4555 TPR repeat-containing 93.3 1.9 4.2E-05 34.2 10.3 90 76-166 47-139 (175)
257 PRK11619 lytic murein transgly 93.3 14 0.0003 39.9 30.3 269 347-643 99-374 (644)
258 COG5107 RNA14 Pre-mRNA 3'-end 93.2 9.2 0.0002 37.7 33.3 76 63-139 33-108 (660)
259 PF13170 DUF4003: Protein of u 93.0 2.3 5E-05 40.4 12.7 64 495-558 159-226 (297)
260 smart00299 CLH Clathrin heavy 92.9 4.7 0.0001 33.4 15.8 126 482-626 10-136 (140)
261 PF13170 DUF4003: Protein of u 92.7 3 6.6E-05 39.7 13.1 127 495-623 78-225 (297)
262 PF13512 TPR_18: Tetratricopep 92.4 3.3 7.1E-05 33.9 11.0 55 555-609 16-76 (142)
263 PF13428 TPR_14: Tetratricopep 92.4 0.43 9.4E-06 30.0 4.9 38 73-111 2-39 (44)
264 COG3629 DnrI DNA-binding trans 92.3 1.5 3.2E-05 40.8 10.0 78 582-660 155-236 (280)
265 COG1729 Uncharacterized protei 92.1 1 2.2E-05 41.2 8.6 59 586-644 184-244 (262)
266 KOG2114 Vacuolar assembly/sort 92.1 20 0.00043 38.6 29.0 183 106-298 282-485 (933)
267 COG4105 ComL DNA uptake lipopr 91.8 10 0.00022 34.6 18.7 56 587-643 174-232 (254)
268 PF04184 ST7: ST7 protein; In 91.7 4.7 0.0001 40.3 13.1 145 484-643 173-323 (539)
269 KOG1585 Protein required for f 91.7 9.7 0.00021 34.2 15.4 105 380-506 33-137 (308)
270 PF13176 TPR_7: Tetratricopept 91.7 0.32 6.9E-06 28.9 3.5 23 654-676 2-24 (36)
271 PF00637 Clathrin: Region in C 91.6 0.12 2.7E-06 43.3 2.3 85 215-302 12-96 (143)
272 PF07035 Mic1: Colon cancer-as 91.5 7.9 0.00017 32.9 15.9 38 232-269 16-53 (167)
273 PF13176 TPR_7: Tetratricopept 91.5 0.42 9.2E-06 28.4 3.9 23 583-605 2-24 (36)
274 PF10602 RPN7: 26S proteasome 91.3 2.6 5.6E-05 36.6 10.1 62 582-643 38-101 (177)
275 KOG0543 FKBP-type peptidyl-pro 91.3 2 4.2E-05 41.6 9.9 63 480-543 258-320 (397)
276 COG3629 DnrI DNA-binding trans 91.1 2.2 4.7E-05 39.7 9.8 76 75-151 156-236 (280)
277 PF07035 Mic1: Colon cancer-as 91.1 8.9 0.00019 32.7 15.1 57 248-304 92-148 (167)
278 PRK09687 putative lyase; Provi 90.8 15 0.00032 34.8 26.6 138 478-627 141-279 (280)
279 COG3118 Thioredoxin domain-con 90.8 14 0.00031 34.4 16.8 57 114-171 141-197 (304)
280 COG4649 Uncharacterized protei 90.6 9.7 0.00021 32.2 13.8 132 481-613 61-200 (221)
281 PF04184 ST7: ST7 protein; In 90.5 21 0.00046 36.0 16.5 167 453-630 173-346 (539)
282 PF04097 Nic96: Nup93/Nic96; 90.2 20 0.00044 38.5 17.6 70 72-142 111-187 (613)
283 KOG0890 Protein kinase of the 89.9 57 0.0012 40.0 24.5 287 353-678 1426-1729(2382)
284 COG4105 ComL DNA uptake lipopr 89.9 15 0.00033 33.5 20.0 83 71-153 33-117 (254)
285 COG0457 NrfG FOG: TPR repeat [ 89.8 15 0.00033 33.3 25.0 214 427-643 37-264 (291)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 89.7 2.4 5.2E-05 31.7 6.9 63 595-659 22-84 (103)
287 COG1747 Uncharacterized N-term 89.6 25 0.00055 35.5 16.2 51 593-643 182-233 (711)
288 PF02259 FAT: FAT domain; Int 89.5 23 0.00051 35.0 18.9 62 582-643 148-212 (352)
289 COG2976 Uncharacterized protei 89.1 13 0.00028 32.3 11.9 84 589-675 98-183 (207)
290 COG0457 NrfG FOG: TPR repeat [ 89.0 18 0.00038 32.9 26.0 218 392-609 37-265 (291)
291 PF13431 TPR_17: Tetratricopep 88.7 0.69 1.5E-05 27.0 3.1 21 614-634 12-32 (34)
292 PF02284 COX5A: Cytochrome c o 88.7 3 6.4E-05 31.6 6.9 62 597-660 27-88 (108)
293 KOG1585 Protein required for f 88.6 18 0.0004 32.6 17.0 197 415-638 33-250 (308)
294 PF10345 Cohesin_load: Cohesin 88.5 40 0.00087 36.4 34.4 163 74-237 61-252 (608)
295 KOG2066 Vacuolar assembly/sort 88.1 41 0.00088 36.1 22.9 46 350-395 395-440 (846)
296 PF07721 TPR_4: Tetratricopept 88.0 0.95 2.1E-05 24.4 3.1 22 654-675 4-25 (26)
297 KOG1464 COP9 signalosome, subu 87.5 23 0.00049 32.4 14.7 49 427-475 41-92 (440)
298 PF10602 RPN7: 26S proteasome 87.4 7.3 0.00016 33.9 10.0 95 550-644 37-142 (177)
299 PF13929 mRNA_stabil: mRNA sta 87.0 26 0.00057 32.7 14.7 112 565-676 144-263 (292)
300 TIGR02561 HrpB1_HrpK type III 87.0 16 0.00035 30.2 10.8 67 119-187 22-90 (153)
301 PF08631 SPO22: Meiosis protei 86.7 29 0.00064 32.9 25.8 17 589-605 255-271 (278)
302 COG2909 MalT ATP-dependent tra 86.6 54 0.0012 35.8 22.3 86 423-508 425-526 (894)
303 TIGR02561 HrpB1_HrpK type III 86.5 9.8 0.00021 31.4 9.3 50 561-610 22-74 (153)
304 PF00515 TPR_1: Tetratricopept 86.5 1.5 3.3E-05 25.4 3.8 27 582-608 3-29 (34)
305 PF13431 TPR_17: Tetratricopep 86.4 0.91 2E-05 26.5 2.7 31 131-162 3-33 (34)
306 KOG2062 26S proteasome regulat 85.8 53 0.0012 35.0 30.9 119 558-678 510-633 (929)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 85.1 8.3 0.00018 28.9 7.5 63 87-150 22-84 (103)
308 PF04190 DUF410: Protein of un 84.9 34 0.00074 32.0 16.5 75 503-577 38-118 (260)
309 PF00637 Clathrin: Region in C 84.9 0.77 1.7E-05 38.4 2.7 84 419-505 13-96 (143)
310 PF02284 COX5A: Cytochrome c o 84.9 7.9 0.00017 29.4 7.4 60 90-150 28-87 (108)
311 KOG4570 Uncharacterized conser 84.4 10 0.00022 35.5 9.4 102 136-240 58-165 (418)
312 KOG0276 Vesicle coat complex C 84.2 21 0.00046 36.7 12.3 103 355-474 645-747 (794)
313 PF07719 TPR_2: Tetratricopept 83.6 2.4 5.3E-05 24.4 3.8 25 584-608 5-29 (34)
314 PF10579 Rapsyn_N: Rapsyn N-te 83.6 2.6 5.7E-05 30.1 4.3 46 592-637 18-65 (80)
315 KOG4570 Uncharacterized conser 83.6 7.1 0.00015 36.4 8.1 101 342-443 59-165 (418)
316 PF07719 TPR_2: Tetratricopept 83.4 2.4 5.2E-05 24.4 3.7 27 652-678 2-28 (34)
317 COG4455 ImpE Protein of avirul 82.8 8.7 0.00019 33.9 7.9 69 555-623 7-80 (273)
318 COG4785 NlpI Lipoprotein NlpI, 82.6 34 0.00075 30.3 14.5 159 139-305 96-266 (297)
319 TIGR02508 type_III_yscG type I 82.5 18 0.00039 27.4 8.3 79 122-205 20-98 (115)
320 PF11207 DUF2989: Protein of u 82.4 20 0.00044 31.5 10.1 79 591-671 118-198 (203)
321 PF13374 TPR_10: Tetratricopep 82.1 2.8 6.1E-05 25.5 3.9 26 582-607 4-29 (42)
322 KOG1586 Protein required for f 82.0 12 0.00027 33.4 8.6 19 626-644 165-183 (288)
323 PF13374 TPR_10: Tetratricopep 81.7 3.4 7.3E-05 25.2 4.1 29 615-643 2-30 (42)
324 PRK11619 lytic murein transgly 81.6 84 0.0018 34.1 35.9 115 79-200 40-154 (644)
325 KOG0403 Neoplastic transformat 81.2 61 0.0013 32.3 18.6 346 75-443 217-612 (645)
326 PF00515 TPR_1: Tetratricopept 80.9 4.3 9.3E-05 23.4 4.1 28 616-643 2-29 (34)
327 COG2976 Uncharacterized protei 80.8 38 0.00082 29.6 13.3 53 589-643 135-187 (207)
328 KOG2066 Vacuolar assembly/sort 80.5 89 0.0019 33.7 25.7 49 246-294 393-441 (846)
329 PF02259 FAT: FAT domain; Int 80.3 63 0.0014 31.9 20.2 66 512-577 144-212 (352)
330 KOG1258 mRNA processing protei 78.9 87 0.0019 32.6 28.7 98 79-177 86-186 (577)
331 PF07163 Pex26: Pex26 protein; 78.3 31 0.00066 32.0 10.2 86 587-675 90-182 (309)
332 PF09613 HrpB1_HrpK: Bacterial 77.9 41 0.0009 28.4 12.3 20 558-577 53-72 (160)
333 PF09613 HrpB1_HrpK: Bacterial 77.2 44 0.00094 28.2 12.2 16 460-475 56-71 (160)
334 PF13181 TPR_8: Tetratricopept 76.8 5.4 0.00012 22.9 3.7 26 652-677 2-27 (34)
335 COG3947 Response regulator con 76.4 68 0.0015 30.1 15.2 72 582-654 281-356 (361)
336 KOG1464 COP9 signalosome, subu 75.8 66 0.0014 29.6 17.7 256 360-621 40-343 (440)
337 PF07163 Pex26: Pex26 protein; 75.6 32 0.0007 31.8 9.6 88 486-573 90-182 (309)
338 PF11846 DUF3366: Domain of un 75.2 8.6 0.00019 34.1 6.2 45 598-644 129-173 (193)
339 PF13174 TPR_6: Tetratricopept 75.0 5.6 0.00012 22.5 3.4 25 620-644 5-29 (33)
340 KOG2063 Vacuolar assembly/sort 75.0 99 0.0021 34.5 14.7 27 109-135 506-532 (877)
341 PRK13800 putative oxidoreducta 74.4 1.7E+02 0.0036 33.6 27.4 257 365-643 622-880 (897)
342 PHA02875 ankyrin repeat protei 73.8 1.1E+02 0.0024 31.2 17.0 19 252-270 72-90 (413)
343 PF13174 TPR_6: Tetratricopept 73.3 4.4 9.5E-05 23.0 2.7 25 654-678 3-27 (33)
344 PF13181 TPR_8: Tetratricopept 73.1 9.4 0.0002 21.9 4.1 27 617-643 3-29 (34)
345 KOG4077 Cytochrome c oxidase, 73.1 27 0.00058 27.8 7.3 59 598-658 67-125 (149)
346 TIGR02508 type_III_yscG type I 73.0 39 0.00085 25.7 8.9 62 455-519 46-107 (115)
347 PF10579 Rapsyn_N: Rapsyn N-te 72.6 14 0.00029 26.7 5.2 49 626-674 17-66 (80)
348 KOG0276 Vesicle coat complex C 71.7 43 0.00094 34.7 10.3 148 461-640 599-746 (794)
349 COG1747 Uncharacterized N-term 71.3 1.3E+02 0.0027 30.9 21.4 43 581-624 206-248 (711)
350 KOG1258 mRNA processing protei 71.2 1.4E+02 0.003 31.3 32.6 412 67-528 40-489 (577)
351 PF13929 mRNA_stabil: mRNA sta 71.1 93 0.002 29.3 15.0 62 510-571 198-260 (292)
352 PF09986 DUF2225: Uncharacteri 70.7 44 0.00095 30.1 9.5 24 621-644 171-194 (214)
353 TIGR03504 FimV_Cterm FimV C-te 70.4 11 0.00023 23.7 3.9 23 586-608 5-27 (44)
354 COG4455 ImpE Protein of avirul 70.2 81 0.0017 28.2 10.3 76 75-151 4-81 (273)
355 PHA02875 ankyrin repeat protei 70.0 1.3E+02 0.0029 30.6 17.3 175 79-273 6-193 (413)
356 PF13762 MNE1: Mitochondrial s 69.9 63 0.0014 26.8 9.4 48 210-257 79-127 (145)
357 PF11207 DUF2989: Protein of u 69.8 65 0.0014 28.4 9.8 73 496-569 123-198 (203)
358 KOG2063 Vacuolar assembly/sort 69.8 1.9E+02 0.0042 32.4 21.2 59 75-135 310-374 (877)
359 KOG2610 Uncharacterized conser 69.4 1.1E+02 0.0024 29.4 17.4 147 153-303 114-274 (491)
360 TIGR03504 FimV_Cterm FimV C-te 69.4 11 0.00024 23.6 3.8 25 485-509 5-29 (44)
361 KOG4648 Uncharacterized conser 69.4 14 0.0003 35.0 6.0 47 558-604 106-155 (536)
362 PRK15180 Vi polysaccharide bio 69.4 61 0.0013 32.6 10.5 129 511-641 286-417 (831)
363 KOG4234 TPR repeat-containing 69.3 30 0.00065 30.2 7.5 87 557-644 103-197 (271)
364 PF04190 DUF410: Protein of un 67.3 1.1E+02 0.0024 28.7 16.9 106 257-373 2-116 (260)
365 KOG4648 Uncharacterized conser 65.9 13 0.00028 35.2 5.1 88 587-678 104-192 (536)
366 KOG4234 TPR repeat-containing 65.0 38 0.00082 29.7 7.2 93 522-616 103-202 (271)
367 PF08311 Mad3_BUB1_I: Mad3/BUB 63.2 56 0.0012 26.5 7.9 42 633-675 81-123 (126)
368 KOG0687 26S proteasome regulat 62.8 1.5E+02 0.0032 28.5 11.7 21 353-373 110-130 (393)
369 KOG1550 Extracellular protein 62.5 2.2E+02 0.0048 30.4 20.8 47 595-644 454-504 (552)
370 KOG4279 Serine/threonine prote 62.4 1.3E+02 0.0028 32.4 11.7 44 433-476 183-229 (1226)
371 PRK10941 hypothetical protein; 62.3 88 0.0019 29.4 10.0 81 582-663 183-263 (269)
372 KOG2908 26S proteasome regulat 61.4 60 0.0013 31.1 8.4 47 586-632 121-174 (380)
373 PF10366 Vps39_1: Vacuolar sor 60.6 76 0.0017 24.8 7.9 27 582-608 41-67 (108)
374 PF10345 Cohesin_load: Cohesin 60.4 2.5E+02 0.0055 30.4 31.7 60 619-679 539-605 (608)
375 PF14689 SPOB_a: Sensor_kinase 60.2 20 0.00043 24.6 4.1 45 597-643 7-51 (62)
376 smart00028 TPR Tetratricopepti 58.6 19 0.00041 19.4 3.5 24 584-607 5-28 (34)
377 cd08819 CARD_MDA5_2 Caspase ac 58.3 73 0.0016 23.6 6.7 32 563-595 50-81 (88)
378 KOG1550 Extracellular protein 56.9 2.7E+02 0.0059 29.7 24.0 246 388-644 259-538 (552)
379 PRK10564 maltose regulon perip 56.7 22 0.00048 33.4 5.0 41 481-521 259-299 (303)
380 COG5159 RPN6 26S proteasome re 55.6 1.8E+02 0.0039 27.2 11.2 48 486-533 10-64 (421)
381 PF11848 DUF3368: Domain of un 55.5 53 0.0011 21.1 5.3 33 490-522 13-45 (48)
382 KOG3364 Membrane protein invol 55.2 68 0.0015 26.2 6.6 61 583-644 35-100 (149)
383 PF10366 Vps39_1: Vacuolar sor 54.9 1E+02 0.0022 24.1 7.8 27 380-406 41-67 (108)
384 PRK10564 maltose regulon perip 54.7 25 0.00053 33.1 4.9 39 582-620 259-297 (303)
385 COG3947 Response regulator con 54.5 80 0.0017 29.6 7.9 56 109-165 281-336 (361)
386 PRK13342 recombination factor 54.1 2.6E+02 0.0055 28.5 17.9 101 410-528 173-279 (413)
387 PF14689 SPOB_a: Sensor_kinase 53.8 30 0.00064 23.7 4.1 26 652-677 24-49 (62)
388 PF11848 DUF3368: Domain of un 51.8 51 0.0011 21.1 4.7 32 83-114 13-44 (48)
389 PF11817 Foie-gras_1: Foie gra 51.8 51 0.0011 30.6 6.7 55 620-674 183-241 (247)
390 KOG0686 COP9 signalosome, subu 51.7 2.4E+02 0.0052 28.1 10.9 88 552-641 153-255 (466)
391 KOG4567 GTPase-activating prot 51.6 1.8E+02 0.004 27.6 9.7 57 499-560 263-319 (370)
392 KOG3807 Predicted membrane pro 50.9 44 0.00096 31.6 5.9 106 526-643 228-339 (556)
393 cd08819 CARD_MDA5_2 Caspase ac 50.5 1E+02 0.0022 22.9 7.1 36 460-496 48-83 (88)
394 KOG4507 Uncharacterized conser 50.2 26 0.00056 36.0 4.6 109 196-306 196-313 (886)
395 PHA03100 ankyrin repeat protei 49.9 3E+02 0.0066 28.6 13.1 14 154-167 117-130 (480)
396 PRK13800 putative oxidoreducta 49.6 4.6E+02 0.01 30.2 27.1 267 266-558 625-893 (897)
397 PF09670 Cas_Cas02710: CRISPR- 49.4 2.6E+02 0.0057 28.1 11.6 60 77-137 136-199 (379)
398 PF09477 Type_III_YscG: Bacter 49.4 1.2E+02 0.0027 23.5 8.9 75 595-677 21-95 (116)
399 KOG0991 Replication factor C, 49.1 2.1E+02 0.0045 26.1 12.1 138 453-614 135-272 (333)
400 KOG4077 Cytochrome c oxidase, 49.1 1.3E+02 0.0028 24.2 7.2 46 91-136 68-113 (149)
401 COG0735 Fur Fe2+/Zn2+ uptake r 47.6 1.1E+02 0.0023 25.6 7.3 64 93-157 7-70 (145)
402 PF09670 Cas_Cas02710: CRISPR- 47.2 3E+02 0.0064 27.7 11.6 18 491-508 143-160 (379)
403 PF11846 DUF3366: Domain of un 47.2 53 0.0012 29.0 5.9 31 578-608 142-172 (193)
404 PF13934 ELYS: Nuclear pore co 46.5 2.3E+02 0.005 25.9 12.5 95 526-629 90-186 (226)
405 PF08311 Mad3_BUB1_I: Mad3/BUB 45.2 1.6E+02 0.0036 23.8 9.0 44 597-640 80-124 (126)
406 PF13762 MNE1: Mitochondrial s 45.2 1.8E+02 0.0039 24.2 11.1 51 477-527 77-128 (145)
407 PF09477 Type_III_YscG: Bacter 44.8 1.5E+02 0.0032 23.1 8.7 79 428-509 21-99 (116)
408 PF13934 ELYS: Nuclear pore co 44.8 2.5E+02 0.0054 25.7 10.5 69 520-591 114-183 (226)
409 PF12862 Apc5: Anaphase-promot 44.7 1.1E+02 0.0023 23.2 6.4 53 591-643 9-69 (94)
410 KOG1498 26S proteasome regulat 43.9 3.4E+02 0.0073 27.0 14.7 194 426-649 25-246 (439)
411 KOG2582 COP9 signalosome, subu 43.8 3.2E+02 0.007 26.7 12.3 19 423-441 193-211 (422)
412 PF12862 Apc5: Anaphase-promot 42.8 83 0.0018 23.8 5.5 54 625-678 8-68 (94)
413 KOG4567 GTPase-activating prot 42.5 1.9E+02 0.0041 27.5 8.4 71 127-200 263-343 (370)
414 PF11768 DUF3312: Protein of u 42.0 3.3E+02 0.0072 28.4 10.8 57 452-508 412-473 (545)
415 KOG4279 Serine/threonine prote 41.5 80 0.0017 33.8 6.6 46 497-542 181-229 (1226)
416 PF14561 TPR_20: Tetratricopep 41.3 1.5E+02 0.0033 22.2 8.7 54 612-666 19-73 (90)
417 KOG3364 Membrane protein invol 41.2 2E+02 0.0044 23.6 7.7 67 612-678 29-98 (149)
418 KOG2471 TPR repeat-containing 41.2 4.2E+02 0.009 27.2 14.7 105 557-663 248-381 (696)
419 COG4941 Predicted RNA polymera 40.9 2.2E+02 0.0048 27.5 8.7 21 656-676 370-390 (415)
420 PF11663 Toxin_YhaV: Toxin wit 40.7 33 0.00072 27.7 3.0 32 389-422 106-137 (140)
421 PF14853 Fis1_TPR_C: Fis1 C-te 40.6 95 0.0021 20.5 4.7 21 588-608 9-29 (53)
422 KOG1586 Protein required for f 39.6 3E+02 0.0065 25.2 18.3 24 591-614 165-188 (288)
423 KOG2659 LisH motif-containing 39.4 2.8E+02 0.006 25.2 8.8 95 546-640 23-128 (228)
424 cd07153 Fur_like Ferric uptake 39.4 73 0.0016 25.2 5.1 46 78-123 6-51 (116)
425 PF06552 TOM20_plant: Plant sp 38.9 1.1E+02 0.0024 26.4 6.0 64 596-664 51-126 (186)
426 TIGR02270 conserved hypothetic 38.4 4.4E+02 0.0096 26.8 25.1 236 384-643 44-280 (410)
427 KOG2297 Predicted translation 38.3 3.6E+02 0.0078 25.7 10.5 156 91-296 186-341 (412)
428 PF10255 Paf67: RNA polymerase 38.1 1.4E+02 0.0031 29.9 7.6 59 619-677 126-190 (404)
429 smart00777 Mad3_BUB1_I Mad3/BU 38.1 2.2E+02 0.0047 23.1 8.9 41 634-675 82-123 (125)
430 PF10255 Paf67: RNA polymerase 37.6 1.9E+02 0.0042 29.1 8.4 59 583-641 125-190 (404)
431 COG0735 Fur Fe2+/Zn2+ uptake r 37.0 75 0.0016 26.5 4.8 47 76-122 24-70 (145)
432 PF01475 FUR: Ferric uptake re 36.4 71 0.0015 25.5 4.6 45 77-121 12-56 (120)
433 PF11838 ERAP1_C: ERAP1-like C 35.9 4.1E+02 0.009 25.7 17.2 186 455-640 45-262 (324)
434 COG2909 MalT ATP-dependent tra 35.9 6.7E+02 0.015 28.1 32.3 47 360-406 471-525 (894)
435 PF04762 IKI3: IKI3 family; I 35.5 5.9E+02 0.013 29.4 12.8 22 382-403 698-719 (928)
436 PF12926 MOZART2: Mitotic-spin 34.9 1.9E+02 0.0041 21.5 7.0 42 434-475 29-70 (88)
437 KOG2168 Cullins [Cell cycle co 34.8 6.8E+02 0.015 27.9 18.3 24 281-304 330-353 (835)
438 cd02680 MIT_calpain7_2 MIT: do 34.7 1.7E+02 0.0037 21.1 5.5 14 628-641 19-32 (75)
439 TIGR02270 conserved hypothetic 34.6 5.1E+02 0.011 26.3 25.5 233 353-607 44-279 (410)
440 PF11663 Toxin_YhaV: Toxin wit 34.4 31 0.00068 27.9 2.0 35 81-117 104-138 (140)
441 PF00244 14-3-3: 14-3-3 protei 34.0 3.8E+02 0.0082 24.7 11.4 58 485-542 7-65 (236)
442 PF11817 Foie-gras_1: Foie gra 33.9 3E+02 0.0065 25.6 8.8 58 584-641 182-244 (247)
443 PF07575 Nucleopor_Nup85: Nup8 33.7 6.3E+02 0.014 27.1 21.1 71 368-440 395-465 (566)
444 PF02607 B12-binding_2: B12 bi 33.1 73 0.0016 23.0 3.8 38 592-629 13-50 (79)
445 PF02184 HAT: HAT (Half-A-TPR) 33.1 1E+02 0.0022 17.8 3.3 22 596-619 3-24 (32)
446 PF08424 NRDE-2: NRDE-2, neces 32.9 4.7E+02 0.01 25.5 13.9 61 89-151 48-108 (321)
447 PF12796 Ank_2: Ankyrin repeat 32.6 2E+02 0.0043 21.0 6.4 6 236-241 78-83 (89)
448 PLN03192 Voltage-dependent pot 32.6 7.3E+02 0.016 28.3 13.2 24 250-273 624-647 (823)
449 PF08424 NRDE-2: NRDE-2, neces 32.5 4.8E+02 0.01 25.4 11.2 25 654-678 157-181 (321)
450 cd00280 TRFH Telomeric Repeat 32.5 2.8E+02 0.006 24.3 7.3 20 422-441 120-139 (200)
451 PF11768 DUF3312: Protein of u 31.8 6.3E+02 0.014 26.6 11.1 56 249-304 412-472 (545)
452 KOG1114 Tripeptidyl peptidase 31.7 8.1E+02 0.018 27.8 14.2 184 465-670 1092-1286(1304)
453 PRK11639 zinc uptake transcrip 31.5 2E+02 0.0042 24.9 6.6 59 405-464 18-76 (169)
454 COG2178 Predicted RNA-binding 31.4 2.5E+02 0.0055 24.7 7.0 15 257-271 133-147 (204)
455 PF14669 Asp_Glu_race_2: Putat 31.3 3.7E+02 0.008 23.7 14.0 57 620-676 137-206 (233)
456 PF03745 DUF309: Domain of unk 30.9 1.8E+02 0.0039 20.0 5.5 50 80-129 7-61 (62)
457 PF14669 Asp_Glu_race_2: Putat 30.9 3.7E+02 0.0081 23.7 12.9 71 383-474 137-207 (233)
458 KOG0890 Protein kinase of the 30.8 1.2E+03 0.027 29.7 33.8 160 112-282 1388-1552(2382)
459 KOG0551 Hsp90 co-chaperone CNS 30.8 2E+02 0.0044 27.7 6.8 83 555-639 87-177 (390)
460 PF12926 MOZART2: Mitotic-spin 30.7 2.3E+02 0.0049 21.1 6.8 41 231-271 29-69 (88)
461 PF09986 DUF2225: Uncharacteri 30.2 4.2E+02 0.009 24.0 9.3 24 587-610 172-195 (214)
462 PF07720 TPR_3: Tetratricopept 29.9 1.2E+02 0.0026 18.0 3.5 22 654-675 4-25 (36)
463 PLN02673 quinolinate synthetas 29.8 1.6E+02 0.0034 31.6 6.6 30 69-98 79-108 (724)
464 KOG4507 Uncharacterized conser 29.5 1.8E+02 0.0039 30.4 6.7 56 111-166 216-273 (886)
465 cd08326 CARD_CASP9 Caspase act 29.3 2.2E+02 0.0048 21.1 5.6 35 258-292 43-77 (84)
466 COG5108 RPO41 Mitochondrial DN 29.2 4.4E+02 0.0095 28.3 9.3 72 418-489 33-113 (1117)
467 PF09868 DUF2095: Uncharacteri 28.9 1.8E+02 0.0039 22.8 5.1 36 113-149 67-102 (128)
468 PRK09462 fur ferric uptake reg 28.8 3.2E+02 0.0069 22.8 7.4 60 98-158 8-68 (148)
469 KOG1497 COP9 signalosome, subu 28.8 1.6E+02 0.0034 28.1 5.7 54 586-639 109-168 (399)
470 PRK11639 zinc uptake transcrip 28.8 2.2E+02 0.0047 24.6 6.5 48 281-328 30-77 (169)
471 PF12796 Ank_2: Ankyrin repeat 28.4 1.9E+02 0.0041 21.1 5.5 14 358-371 5-18 (89)
472 KOG2659 LisH motif-containing 28.4 3.5E+02 0.0076 24.6 7.6 14 287-300 114-127 (228)
473 smart00386 HAT HAT (Half-A-TPR 28.2 1.1E+02 0.0024 16.7 3.9 13 596-608 3-15 (33)
474 PF15297 CKAP2_C: Cytoskeleton 28.1 4.3E+02 0.0093 25.9 8.6 46 581-626 141-186 (353)
475 PF09454 Vps23_core: Vps23 cor 27.9 1.4E+02 0.003 20.8 4.1 49 578-627 6-54 (65)
476 KOG4642 Chaperone-dependent E3 27.8 4.9E+02 0.011 24.0 9.2 115 523-639 19-141 (284)
477 PF09454 Vps23_core: Vps23 cor 27.8 1.9E+02 0.0042 20.1 4.8 48 71-119 7-54 (65)
478 PRK09462 fur ferric uptake reg 27.6 3.6E+02 0.0079 22.5 7.8 60 403-463 7-67 (148)
479 COG5108 RPO41 Mitochondrial DN 27.6 3.9E+02 0.0085 28.6 8.7 48 112-159 33-82 (1117)
480 COG0790 FOG: TPR repeat, SEL1 27.2 5.5E+02 0.012 24.4 18.0 179 492-681 54-267 (292)
481 PF04090 RNA_pol_I_TF: RNA pol 27.1 2.3E+02 0.0049 25.2 6.2 63 580-643 41-104 (199)
482 cd07153 Fur_like Ferric uptake 26.4 1.6E+02 0.0035 23.2 5.0 47 586-632 6-52 (116)
483 PF02847 MA3: MA3 domain; Int 26.3 1.9E+02 0.0042 22.5 5.5 25 453-477 7-31 (113)
484 COG5159 RPN6 26S proteasome re 26.1 5.7E+02 0.012 24.2 16.3 21 352-372 130-150 (421)
485 PLN03192 Voltage-dependent pot 26.0 8.2E+02 0.018 27.8 12.2 22 354-375 659-680 (823)
486 PF14561 TPR_20: Tetratricopep 26.0 2.9E+02 0.0062 20.7 7.3 55 67-121 17-72 (90)
487 KOG0889 Histone acetyltransfer 25.6 1.8E+03 0.039 29.9 22.1 92 417-508 2555-2661(3550)
488 KOG1839 Uncharacterized protei 25.4 9.1E+02 0.02 28.5 11.8 150 524-673 942-1121(1236)
489 KOG0292 Vesicle coat complex C 25.2 3E+02 0.0066 30.5 7.7 110 548-678 671-780 (1202)
490 PF07575 Nucleopor_Nup85: Nup8 25.2 8.7E+02 0.019 26.1 18.8 23 212-234 150-172 (566)
491 PF08780 NTase_sub_bind: Nucle 25.1 2.5E+02 0.0055 22.6 5.8 18 619-636 63-80 (124)
492 KOG2422 Uncharacterized conser 24.7 8.6E+02 0.019 25.8 14.4 119 69-187 281-429 (665)
493 KOG2908 26S proteasome regulat 24.4 6.2E+02 0.013 24.7 8.7 62 454-515 81-156 (380)
494 KOG2396 HAT (Half-A-TPR) repea 24.0 8.3E+02 0.018 25.4 34.8 79 90-170 89-168 (568)
495 PRK14962 DNA polymerase III su 23.8 8.4E+02 0.018 25.4 13.3 124 406-550 191-320 (472)
496 KOG0508 Ankyrin repeat protein 23.7 8.1E+02 0.018 25.2 16.7 172 83-270 50-237 (615)
497 KOG0292 Vesicle coat complex C 23.6 7.9E+02 0.017 27.6 10.2 131 457-609 652-782 (1202)
498 PRK10941 hypothetical protein; 23.3 6.4E+02 0.014 23.8 10.0 52 113-165 187-238 (269)
499 COG4003 Uncharacterized protei 23.1 2.6E+02 0.0055 20.4 4.6 25 113-137 37-61 (98)
500 PF01475 FUR: Ferric uptake re 23.0 1.7E+02 0.0037 23.3 4.6 51 110-160 10-60 (120)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.1e-90 Score=758.64 Aligned_cols=608 Identities=29% Similarity=0.520 Sum_probs=597.2
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHH
Q 047571 67 LHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRT 146 (681)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (681)
..++++..++.++..+++.|++++|+.+|+.|.+.|++|+..+|..++.+|.+.+....+.+++..+.+.+..++..++|
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 33556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCch
Q 047571 147 KLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASAL 226 (681)
Q Consensus 147 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 226 (681)
.++..|++.|+++.|.++|++|+++|..+||.+|.+|++.| ++++|+.+|++|...|+.||..||+.++++|+..+++
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g--~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG--YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047571 227 MQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREG 306 (681)
Q Consensus 227 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 306 (681)
..+.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|..+|.++||++|.+|++.|++++|+++|++|.+.|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHH
Q 047571 307 IYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMS 386 (681)
Q Consensus 307 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 386 (681)
+.||..||+.++.+|++.|+.+.+.+++..+.+. |+.||..+|++++.+|++.|++++|.++|++|..+|..+||++|.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 047571 387 GYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDY 466 (681)
Q Consensus 387 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (681)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCC
Q 047571 467 SLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA 546 (681)
Q Consensus 467 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 546 (681)
|.++|++|.++|..+|+++|.+|++.|+.++|+++|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.+.|+.
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999986 59999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571 547 SVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN 626 (681)
Q Consensus 547 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 626 (681)
++..+++.++.+|+++|++++|.++|+.+ .+|..+||++|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 627 QAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 627 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
+.|++++|.++|+.|.+..++.|+..+|++|+++|++.|++++|.+++++||.
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~ 653 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI 653 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 99999999999999997679999999999999999999999999999999974
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-81 Score=691.92 Aligned_cols=575 Identities=24% Similarity=0.392 Sum_probs=559.4
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 047571 69 EKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKL 148 (681)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (681)
+++..+|+.++.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..+|+.|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhh
Q 047571 149 VKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQ 228 (681)
Q Consensus 149 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 228 (681)
+.+|+++|++++|.++|++|+++|..+||++|.+|++.| ++++|+++|++|.+.|+.||..||+.++.+|++.|+++.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g--~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENG--ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047571 229 GLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIY 308 (681)
Q Consensus 229 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 308 (681)
+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 047571 309 PNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGY 388 (681)
Q Consensus 309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 388 (681)
||..||+.++.+|++.|+.+.+.++++.+.+. |+.++..++++|+++|++.|++++|.++|++|.++|+.+|+.+|.+|
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 047571 389 VSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL 468 (681)
Q Consensus 389 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (681)
++.|+.++|+.+|++|.. ++.||..||+.+|.+|++.|+++.+.+++..+.+.|+.++..++++|+++|++.|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999986 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH-HcCCCC
Q 047571 469 KLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVL-KKDFAS 547 (681)
Q Consensus 469 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~ 547 (681)
++|+++ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|. +.|+.|
T Consensus 545 ~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 545 NQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999999 689999
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 047571 548 VPFVAAENIKMYGMCGFLECAKLVFDAVPV-KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSIC 625 (681)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~ 625 (681)
+..+|+.++.+|++.|++++|.+++++|.. ||..+|++|+.+|..+|+.+.+....+++.+. .| +...|..|.+.|
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~y 701 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLY 701 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHH
Confidence 999999999999999999999999999964 99999999999999999999999999999884 55 677888889999
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCh
Q 047571 626 NQAGFADEACRIFNVMSRGYKIEALE 651 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~~~~~~~~~ 651 (681)
+..|+|++|.++.+.|++. |+.+++
T Consensus 702 a~~g~~~~a~~vr~~M~~~-g~~k~~ 726 (857)
T PLN03077 702 ADAGKWDEVARVRKTMREN-GLTVDP 726 (857)
T ss_pred HHCCChHHHHHHHHHHHHc-CCCCCC
Confidence 9999999999999999886 776654
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.6e-69 Score=578.00 Aligned_cols=530 Identities=16% Similarity=0.166 Sum_probs=441.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCC-CCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHH
Q 047571 104 PVNVTTFNALITACVRTRSLVEGRLIHTHIRINGL-ENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRG 182 (681)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~ 182 (681)
.++...|..++..|++.|++++|.++|++|.+.|+ .++..+++.++..|++.|.+++|.++|+.|..|+..+|+.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 55778888999999999999999999999998885 56777888899999999999999999998888888888888888
Q ss_pred HHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChH
Q 047571 183 AVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIK 262 (681)
Q Consensus 183 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~ 262 (681)
|++.| +++.|..+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 447 ~~k~g--~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 447 CASSQ--DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHhCc--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 88888 8888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhccCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhh
Q 047571 263 LARRVFDETGD----RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVL 338 (681)
Q Consensus 263 ~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 338 (681)
+|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|...+
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~-------------------------------- 572 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET-------------------------------- 572 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc--------------------------------
Confidence 88887777643 566677777777777777777777777765421
Q ss_pred hccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHH
Q 047571 339 KNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER----NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVV 414 (681)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 414 (681)
.++.||..+|++++.+|++.|++++|.++|+.|.+. +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 573 --~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 573 --HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred --CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 134455555566666677777777777777777653 55788888889999999999999999999999999999
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCcchHHHHHHHHH
Q 047571 415 TVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEME----VRNVISWTAMIDSCI 490 (681)
Q Consensus 415 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~ 490 (681)
+|+.+|.+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. .||..+|+.||.+|+
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~ 730 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999985 489999999999999
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 047571 491 ENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKL 570 (681)
Q Consensus 491 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 570 (681)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++++|.+.|+.|+..+|+.++.+|. ++++++..
T Consensus 731 k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~ 808 (1060)
T PLN03218 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACA 808 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999987643 24555554
Q ss_pred HhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC
Q 047571 571 VFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL 650 (681)
Q Consensus 571 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 650 (681)
+.+.+.. |+. .......+..++|+.+|++|.+.|+.||..||..++.++++.+..+.+..+++.|... +..|+
T Consensus 809 l~~~v~~-----f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~ 881 (1060)
T PLN03218 809 LGEPVVS-----FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQK 881 (1060)
T ss_pred hhhhhhh-----hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcc
Confidence 4332221 110 1111122345679999999999999999999999998888889999999999988765 78888
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhccCC
Q 047571 651 EEHYLIMIDILTRFGRIEEAHRFREMSSSL 680 (681)
Q Consensus 651 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 680 (681)
..+|++||+++++. .++|..++++|..+
T Consensus 882 ~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 882 QSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred hhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 99999999998432 46899999998654
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-68 Score=572.43 Aligned_cols=474 Identities=24% Similarity=0.417 Sum_probs=457.5
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 047571 71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQG-IPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLV 149 (681)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 149 (681)
+...|+.++..+.+.|++++|+++|++|...+ +.|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34589999999999999999999999998764 78999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhh
Q 047571 150 KMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQG 229 (681)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 229 (681)
.+|++.|++++|.++|++|++||..+||.++.+|++.| ++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g--~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG--NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc--CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047571 230 LKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYP 309 (681)
Q Consensus 230 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 309 (681)
.+++..+.+.|+.||..+|+.||++|++.|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 047571 310 NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYV 389 (681)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 389 (681)
|..||+.++.+|++.|.++.|.+++..+.+. |+.+|..++++|+++|++.|++++|.++|++|.++|+.+||++|.+|+
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH-hCCCCChhHHHHHHHHHHhcCChHHHH
Q 047571 390 SNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVK-NQFLPNVSIITSLMIMYSKCGVLDYSL 468 (681)
Q Consensus 390 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (681)
+.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 699999999999999999999999999
Q ss_pred HHHhhCC-CCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHcCCC
Q 047571 469 KLFDEME-VRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPD-SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA 546 (681)
Q Consensus 469 ~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 546 (681)
+++++|. .|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+.|+.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999997 48999999999999999999999999999975 4554 568999999999999999999999999998876
Q ss_pred CCh
Q 047571 547 SVP 549 (681)
Q Consensus 547 ~~~ 549 (681)
..+
T Consensus 561 k~~ 563 (697)
T PLN03081 561 MHP 563 (697)
T ss_pred cCC
Confidence 443
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-67 Score=567.18 Aligned_cols=471 Identities=25% Similarity=0.372 Sum_probs=449.4
Q ss_pred CCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcC-CCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhH
Q 047571 172 SVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELG-VQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTS 250 (681)
Q Consensus 172 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 250 (681)
+..+|+.+|.++.+.| ++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 86 ~~~~~~~~i~~l~~~g--~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 86 SGVSLCSQIEKLVACG--RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CceeHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4445666666666666 6667777777787754 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhccc
Q 047571 251 LIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLG 330 (681)
Q Consensus 251 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 330 (681)
++.+|++.|++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcC
Q 047571 331 QEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFR 410 (681)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 410 (681)
.+++..+.+. |+.+|..++++|+++|++.|++++|.++|++|..+|+++||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 244 ~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 244 QQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHh-CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHH
Q 047571 411 PDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCI 490 (681)
Q Consensus 411 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 490 (681)
||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+++|++.|++++|.++|++|.++|..+||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHHHHH
Q 047571 491 ENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLK-KDFASVPFVAAENIKMYGMCGFLECAK 569 (681)
Q Consensus 491 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 569 (681)
+.|+.++|+++|++|.+.|+.||..||..++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 699999999999999999999999999
Q ss_pred HHhhhCCC-CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC
Q 047571 570 LVFDAVPV-KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKI 647 (681)
Q Consensus 570 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 647 (681)
++++++.. |+..+|++|+.+|..+|+++.|..+++++.+ +.| +..+|..|++.|++.|++++|.++++.|++. |+
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~ 559 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GL 559 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Confidence 99999976 8999999999999999999999999999986 455 5789999999999999999999999999886 65
Q ss_pred C
Q 047571 648 E 648 (681)
Q Consensus 648 ~ 648 (681)
.
T Consensus 560 ~ 560 (697)
T PLN03081 560 S 560 (697)
T ss_pred c
Confidence 4
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-66 Score=559.95 Aligned_cols=529 Identities=15% Similarity=0.196 Sum_probs=442.1
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHH
Q 047571 67 LHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGI-PVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLR 145 (681)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (681)
...++...|..++..+++.|++++|+++|++|.+.|+ +++..+++.++..|.+.|.+.+|..+++.|.. |+..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 3445677899999999999999999999999999985 67888899999999999999999999999973 999999
Q ss_pred HHHHHHhhcCCChhHHHHhhhhcC----CCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhh
Q 047571 146 TKLVKMYTSCGSFEDAEKVFDESS----SESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFA 221 (681)
Q Consensus 146 ~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 221 (681)
+.++.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.| +++.|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G--~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG--KVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999997 477888999999999999 99999999999999999999999999999999
Q ss_pred ccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccC------CCChhhHHHHHHHHHhcCChHHH
Q 047571 222 GASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETG------DRDIVVWGSMIAGFAHNRLRWEA 295 (681)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a 295 (681)
+.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999999999999999999985 47999999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC
Q 047571 296 LDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE 375 (681)
Q Consensus 296 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 375 (681)
.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|.+. |+.||..+|+.++++|++.|++++|.++|++|.+
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999888888888888888888888877 7888888888888777777777777777777764
Q ss_pred ----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHH
Q 047571 376 ----RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSII 451 (681)
Q Consensus 376 ----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 451 (681)
+|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccc
Q 047571 452 TSLMIMYSKCGVLDYSLKLFDEMEV----RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQL 527 (681)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 527 (681)
+.++.+|++.|++++|.+++++|.+ ||..+|+.++..|. +++++|..+.+.+..-. + .......
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n 825 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIEN 825 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------ccccccc
Confidence 7777777777777777777777653 66677777765443 23444444433332210 0 0011112
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC----CChhhHHHHHHHHHcCCChHHHHHHH
Q 047571 528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV----KGSITWTAIIEAYGYNDLCQEALSLF 603 (681)
Q Consensus 528 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~ 603 (681)
+..+.|..+|++|.+.|+.|+..+|..++.++++.+..+.+..+++.+.. ++..+|+++|.++.+. .++|..++
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~ 903 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLL 903 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHH
Confidence 23467889999999999999999999999888888888999988887754 6678999999988432 46899999
Q ss_pred HHHHhCCCCCCHH
Q 047571 604 DKMRNGGFTPNHF 616 (681)
Q Consensus 604 ~~m~~~g~~p~~~ 616 (681)
++|...|+.|+..
T Consensus 904 ~em~~~Gi~p~~~ 916 (1060)
T PLN03218 904 EEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHcCCCCCcc
Confidence 9999999999865
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.5e-35 Score=331.46 Aligned_cols=594 Identities=12% Similarity=0.038 Sum_probs=490.7
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHH
Q 047571 67 LHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRT 146 (681)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (681)
..+.+...+..+...+...|++++|...|+.+.+.. +.+...+..+...+.+.|++++|...++.+.... +.+...+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 367 (899)
T TIGR02917 290 SAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALS 367 (899)
T ss_pred hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 334444455566667778888888888888887653 4456677778888888888999988888887665 55677888
Q ss_pred HHHHHhhcCCChhHHHHhhhhcCCC---CCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhcc
Q 047571 147 KLVKMYTSCGSFEDAEKVFDESSSE---SVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGA 223 (681)
Q Consensus 147 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 223 (681)
.+...+.+.|++++|.+.|+++.+. +...+..+...+...| ++++|+..++++.+.... +......++..+.+.
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQG--DPSEAIADLETAAQLDPE-LGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhc
Confidence 8888888899999999998876532 2334666667777777 889999998888765422 233455677788889
Q ss_pred CchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 047571 224 SALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCAR 300 (681)
Q Consensus 224 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 300 (681)
|++++|.++++.+.+. .+.+..++..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999888764 355678888899999999999999999987654 356678888889999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CC
Q 047571 301 WMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RN 377 (681)
Q Consensus 301 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~ 377 (681)
++.+.+ +.+..++..+...+...|+.+.+...+..+.+. .+.+...+..++..+.+.|++++|..+++.+.. .+
T Consensus 524 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 600 (899)
T TIGR02917 524 KVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS 600 (899)
T ss_pred HHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 998764 335677888888888999999999999988776 455667778899999999999999999988864 36
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571 378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIM 457 (681)
Q Consensus 378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (681)
...|..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+...
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 7789999999999999999999999998763 3356677888888999999999999999988764 5567888999999
Q ss_pred HHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHH
Q 047571 458 YSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGK 534 (681)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 534 (681)
+...|++++|.++++.+.+ .+...+..+...+...|++++|.+.|+++...+ |+..++..+..++...|++++|.
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999875 355678888899999999999999999998864 55577888899999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047571 535 EIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGF 611 (681)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 611 (681)
..++.+.+.. +.++..+..+...|...|++++|...|+++.. ++...++.+...+...|+ .+|+..++++.+..
T Consensus 757 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~- 833 (899)
T TIGR02917 757 KTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA- 833 (899)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-
Confidence 9999998864 44688899999999999999999999998876 457789999999999999 88999999999853
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 612 TPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 612 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
+-+..++..+..++...|++++|.++++++.+. +. .+..++..++.+|.+.|+.++|++++++|.
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI-AP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 446778889999999999999999999999875 33 267899999999999999999999999985
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.3e-33 Score=318.16 Aligned_cols=601 Identities=12% Similarity=0.007 Sum_probs=422.6
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH------------------------------
Q 047571 61 FPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTF------------------------------ 110 (681)
Q Consensus 61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------------------------ 110 (681)
+...+...|.++..+..++..+...|++++|...++.+.+.. +.+...+
T Consensus 216 ~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 294 (899)
T TIGR02917 216 YRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEY 294 (899)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 333444445555566666666666666666666666655442 1122222
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCC---CCccHHHHHHHH
Q 047571 111 ----NALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSE---SVYPWNALLRGA 183 (681)
Q Consensus 111 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~ 183 (681)
..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|.+.++.+... +...+..+...+
T Consensus 295 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (899)
T TIGR02917 295 LPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY 373 (899)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 222333344445555555555444433 333444555555566666666666666554422 222355555556
Q ss_pred HHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHH
Q 047571 184 VIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKL 263 (681)
Q Consensus 184 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 263 (681)
...| ++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+... ........++..+.+.|++++
T Consensus 374 ~~~g--~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 374 LALG--DFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHCC--CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHH
Confidence 6666 6666666666655442 12333455555556666666666666666655432 123344455666777777777
Q ss_pred HHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhc
Q 047571 264 ARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKN 340 (681)
Q Consensus 264 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 340 (681)
|.++++.+.. .+..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++.|...++.+.+.
T Consensus 450 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777766653 255677777888888888888888888777643 223445666677777778888888888877765
Q ss_pred cCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHH
Q 047571 341 ERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVA 417 (681)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 417 (681)
.+.+...+..+...+.+.|+.++|..++.++... +...+..++..+...|++++|..+++.+.+.. +.+...|.
T Consensus 529 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 529 --DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred --CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 3456677778888888888888888888776542 45567778888888888888888888887653 45667788
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCC
Q 047571 418 TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGR 494 (681)
Q Consensus 418 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~ 494 (681)
.+..++...|++++|...++.+.+.. +.+...+..+..++.+.|++++|...++++.+ .+..++..++..+...|+
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 88888888899999999888888764 44666778888888889999999998888765 345678888888889999
Q ss_pred hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhh
Q 047571 495 LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDA 574 (681)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 574 (681)
+++|.++++.+.+.+ +.+...+..+...+...|++++|...+..+.+.+ |+...+..++.++.+.|++++|...+++
T Consensus 685 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 685 TESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888775 4566677788888889999999999999888764 4446777888899999999999998888
Q ss_pred CCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCh
Q 047571 575 VPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALE 651 (681)
Q Consensus 575 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 651 (681)
+.. .+...+..+...|...|++++|.+.|+++.+.+ +++...+..+...+...|+ ++|+++++++.+.. +-+.
T Consensus 762 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~~~ 837 (899)
T TIGR02917 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PNIP 837 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CCCc
Confidence 766 346778888889999999999999999998864 5678889999999999999 88999999887642 1235
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 652 EHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 652 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
..+..++.++...|++++|.++++++..
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6788889999999999999999988764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=6.9e-26 Score=256.00 Aligned_cols=604 Identities=11% Similarity=-0.029 Sum_probs=429.9
Q ss_pred cCCCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH----------------HHHHHHHHhcCC
Q 047571 59 DAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTF----------------NALITACVRTRS 122 (681)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~ll~~~~~~~~ 122 (681)
..+...+...|.++.++..++..+.+.|+.++|.+.++++.+.. |.+.... ..+.+.+...|+
T Consensus 49 ~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~ 127 (1157)
T PRK11447 49 QSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGR 127 (1157)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 44666777788899999999999999999999999999998875 2233221 333446788899
Q ss_pred hhHHHHHHHHHHHhCCCCchh-HHHHHHHHhhcCCChhHHHHhhhhcCCCC---CccHHHHHHHHHHcCCcChhhHHHHH
Q 047571 123 LVEGRLIHTHIRINGLENNGF-LRTKLVKMYTSCGSFEDAEKVFDESSSES---VYPWNALLRGAVIAGKKRYRGVLFNY 198 (681)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~~a~~~~ 198 (681)
+++|...|+.+...+ +++.. ............|+.++|++.++++...+ ...+..+...+...| +.++|+..+
T Consensus 128 ~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g--~~~eAl~~l 204 (1157)
T PRK11447 128 TEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG--RRDEGFAVL 204 (1157)
T ss_pred HHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC--CHHHHHHHH
Confidence 999999999998765 33432 22222222334689999999999887432 234666677777777 999999999
Q ss_pred HHHHHcCCC----------------CCh---hhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcC
Q 047571 199 MKMRELGVQ----------------LNV---YTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCG 259 (681)
Q Consensus 199 ~~m~~~g~~----------------p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 259 (681)
+++.+.... ++. ..+...+..+-.......|...+..+.+....|+... ......+...|
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g 283 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSG 283 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCC
Confidence 988653210 000 0112222222222334455555555444333333221 23356677899
Q ss_pred ChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhH------------HHHHHHHhh
Q 047571 260 KIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN-SVVL------------TILLPVIGE 323 (681)
Q Consensus 260 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~------------~~ll~~~~~ 323 (681)
++++|+..|++... .+...+..+...+.+.|++++|+..|++..+...... ...+ ......+..
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999988754 3677889999999999999999999999887542221 1111 112345667
Q ss_pred hhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHH
Q 047571 324 AWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRS 400 (681)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~ 400 (681)
.|++++|...++.+.+. .+.+...+..+...+...|++++|.+.|++..+. +...+..+...+. .++.++|+.+
T Consensus 364 ~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~ 440 (1157)
T PRK11447 364 ANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAF 440 (1157)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHH
Confidence 88999999999999887 4456667788899999999999999999987753 4556666666664 4578999888
Q ss_pred HHHHHHcCcC--------CCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 047571 401 IAWMQQEGFR--------PDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFD 472 (681)
Q Consensus 401 ~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 472 (681)
++.+...... .....+..+...+...|++++|.+.+++..+.. +-+...+..+...|.+.|++++|...++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8765432100 011234455667788999999999999988865 3456677788899999999999999999
Q ss_pred hCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH---------HHHHHHHHhccccchHHHHHHHHHH
Q 047571 473 EMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV---------AMARMLSVSGQLKALKLGKEIHGQV 540 (681)
Q Consensus 473 ~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~~~~~~a~~~~~~~ 540 (681)
++.+ | +...+..+...+...++.++|+..++.+......++.. .+......+...|+.++|..+++.
T Consensus 520 ~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~- 598 (1157)
T PRK11447 520 RLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ- 598 (1157)
T ss_pred HHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-
Confidence 8754 3 33444445555677899999999998875433222221 123445667788999999988872
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHH
Q 047571 541 LKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFT 617 (681)
Q Consensus 541 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 617 (681)
.+.++..+..+...|.+.|++++|...|+++.. | +...+..++..|...|++++|++.+++..+.. +.+...
T Consensus 599 ----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~ 673 (1157)
T PRK11447 599 ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNT 673 (1157)
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHH
Confidence 345677788899999999999999999998876 4 47788889999999999999999999888742 335677
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 618 FKVLLSICNQAGFADEACRIFNVMSRGYKIEA----LEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
+..+..++...|++++|.++++.+.....-.| +...+..+.+++.+.|+.++|++.+++.
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77888889999999999999998876422222 2245666788899999999999998765
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.3e-23 Score=235.58 Aligned_cols=594 Identities=10% Similarity=-0.022 Sum_probs=428.4
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHH------
Q 047571 72 PRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLR------ 145 (681)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------ 145 (681)
...+...++.+...++.+.|.+.++++.... +-++..+..++..+.+.|+.++|.+.++++.+.. +.+....
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~ 105 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHH
Confidence 3446677888999999999999999998764 4478889999999999999999999999999886 3333322
Q ss_pred ----------HHHHHHhhcCCChhHHHHhhhhcCCCCCccHHH---HHHHH-HHcCCcChhhHHHHHHHHHHcCCCCChh
Q 047571 146 ----------TKLVKMYTSCGSFEDAEKVFDESSSESVYPWNA---LLRGA-VIAGKKRYRGVLFNYMKMRELGVQLNVY 211 (681)
Q Consensus 146 ----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---ll~~~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 211 (681)
..+...+...|++++|++.|+.+.+.++..... +.... ...+ +.++|+..++++.+.. +-+..
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g--~~~~A~~~L~~ll~~~-P~~~~ 182 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPA--QRPEAINQLQRLNADY-PGNTG 182 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCc--cHHHHHHHHHHHHHhC-CCCHH
Confidence 333456888999999999999887543333221 11111 1235 8999999999998863 23455
Q ss_pred hHHHHHHHhhccCchhhhHHHHHHHHHhCCCC----------------CcH---HHhHHHHHHHhcCChHHHHHHHhccC
Q 047571 212 TFSCVIKSFAGASALMQGLKTHALLIKNGFVD----------------YLI---LRTSLIDMYFKCGKIKLARRVFDETG 272 (681)
Q Consensus 212 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~----------------~~~---~~~~li~~~~~~~~~~~a~~~~~~~~ 272 (681)
.+..+...+...|+.++|.+.++++.+..... +.. .+...+..+-.....+.|...+....
T Consensus 183 ~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~ 262 (1157)
T PRK11447 183 LRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQ 262 (1157)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 67778888899999999999999986532110 000 11111111111222344555554322
Q ss_pred C--CChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchH
Q 047571 273 D--RDIV-VWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFV 349 (681)
Q Consensus 273 ~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 349 (681)
. .|.. ........+...|++++|+..|++..+.. +-+...+..+..++.+.|+.++|...++...+.....+....
T Consensus 263 ~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 263 KQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred HhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 1 1111 11234566788999999999999998753 225677888889999999999999999998876322222221
Q ss_pred H------------hHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHH
Q 047571 350 R------------SSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVV 414 (681)
Q Consensus 350 ~------------~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 414 (681)
+ ......+.+.|++++|...|+++.+. +...+..+...+...|++++|++.|++..+.. +.+..
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~ 420 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTN 420 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 2 12345677899999999999988753 56678888999999999999999999998753 22344
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHhCC--------CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHH
Q 047571 415 TVATVIPVCSQLKALNHGKEIHAYAVKNQF--------LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWT 483 (681)
Q Consensus 415 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~ 483 (681)
.+..+...+. .++.++|..+++.+..... ......+..+...+...|++++|.+.|++..+ | +...+.
T Consensus 421 a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~ 499 (1157)
T PRK11447 421 AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499 (1157)
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5555555553 4678899888876433210 01123455677788899999999999999875 4 445677
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCCh---------hHHHH
Q 047571 484 AMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVP---------FVAAE 554 (681)
Q Consensus 484 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~ 554 (681)
.+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......+.. ..+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 88889999999999999999998753 223334434444566788999999988876543322221 12234
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047571 555 NIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEA 634 (681)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 634 (681)
+...+...|+.++|..+++.-+ .+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+...|++++|
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 5677889999999999998422 345567788899999999999999999999863 44788999999999999999999
Q ss_pred HHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 635 CRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 635 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
++.++.+.+. .|+ ...+..+..++.+.|+.++|.++++++..
T Consensus 657 ~~~l~~ll~~---~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 657 RAQLAKLPAT---ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHhcc---CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999977653 443 56677889999999999999999998743
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.1e-21 Score=211.34 Aligned_cols=570 Identities=10% Similarity=-0.041 Sum_probs=352.2
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHH
Q 047571 83 ARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAE 162 (681)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (681)
...|++++|+..|++..+.. |-+..++..+...|...|+.++|...+++..+.. +.|...+..+.. + ++.++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~-i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAA-I---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHH-h---ccChhHH
Confidence 33489999999999998875 3467888889999999999999999999998775 344555544422 2 8888999
Q ss_pred HhhhhcCC--CCCc-cHHHHHHHH-----HHcCCcChhhHHHHHHHHHHcCCCCChhhHHHH-HHHhhccCchhhhHHHH
Q 047571 163 KVFDESSS--ESVY-PWNALLRGA-----VIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCV-IKSFAGASALMQGLKTH 233 (681)
Q Consensus 163 ~~~~~~~~--~~~~-~~~~ll~~~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~ 233 (681)
++++++.. |+.. .+..+.... .... ..+++...++ .......|+..+.... .+.|...|++++|++++
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~--q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLA--QLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhh--hHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99988863 3322 233332220 1122 4466666665 4444444455545555 88889999999999999
Q ss_pred HHHHHhCCCCCcHHHhHHHHHHHh-cCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh
Q 047571 234 ALLIKNGFVDYLILRTSLIDMYFK-CGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIY-PNS 311 (681)
Q Consensus 234 ~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~ 311 (681)
..+.+.+. .+......|..+|.. .++ +.+..+++...+.+...+..+...+.+.|+.++|..+++++...-.. |+.
T Consensus 206 ~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 206 NEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 99998873 344556667677777 466 88888877655568888999999999999999999999887654322 555
Q ss_pred hhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCC-chHHhHHHHHHHhcCCHHHHHHHH--------------------
Q 047571 312 VVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEE-LFVRSSLVDMYCKCRDMNSAWRVF-------------------- 370 (681)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~-------------------- 370 (681)
.++..++.-..... ..+..-+.. ...++ ......++..+.+.++++.+.++.
T Consensus 284 ~~~~~~l~r~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 356 (987)
T PRK09782 284 KSWLYLLSKYSANP--VQALANYTV-----QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATR 356 (987)
T ss_pred HHHHHHHHhccCch--hhhccchhh-----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccC
Confidence 44444332222111 000000000 00000 001112234444444444443332
Q ss_pred ---------hhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-C-cCCCHHHHHHHHHHhhccCC---hhHHH
Q 047571 371 ---------YETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQE-G-FRPDVVTVATVIPVCSQLKA---LNHGK 433 (681)
Q Consensus 371 ---------~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~~~---~~~a~ 433 (681)
..+-.. +......+.-...+.|+.++|..+|+..... + -.++.....-++..+.+.+. ..++.
T Consensus 357 ~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 357 NKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred chhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 222111 2222222233345677778888887776652 1 22233333355555555544 22221
Q ss_pred HH----------------------HHHHHH-hCC-CC--ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHH
Q 047571 434 EI----------------------HAYAVK-NQF-LP--NVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAM 485 (681)
Q Consensus 434 ~~----------------------~~~~~~-~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l 485 (681)
.+ ...... .+. ++ +...+..+..++.. +++++|...+.+... |+......+
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~l 515 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAV 515 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHH
Confidence 11 111111 111 23 45566666666665 777778886666553 443332233
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 047571 486 IDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFL 565 (681)
Q Consensus 486 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 565 (681)
...+...|++++|...|+++... .|+...+..+..++...|+.+.|...++..++.+ +.....+..+.......|++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCH
Confidence 34445788888888888877553 4444455566667777888888888888877654 22233333333344455888
Q ss_pred HHHHHHhhhCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 566 ECAKLVFDAVPV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 566 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
++|...+++... |+...|..+...+.+.|++++|+..+++..+.. +.+...+..+..++...|++++|++.++...+
T Consensus 593 ~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 593 ELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888887776 666777778888888888888888888888753 33667777777788888888888888887765
Q ss_pred cCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 644 GYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 644 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
. .| +...+..+..++...|++++|+..+++..
T Consensus 672 l---~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 672 G---LPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred h---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3 34 36777888888888888888888877654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=2.2e-20 Score=201.43 Aligned_cols=585 Identities=8% Similarity=-0.063 Sum_probs=417.7
Q ss_pred ccCCCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 047571 58 KDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRING 137 (681)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 137 (681)
...+...+...|.++.++..+.+.|.+.|++++|+..+++..+.. |+-..|..++..+ ++..+|..+++++.+..
T Consensus 64 ~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~ 138 (987)
T PRK09782 64 IREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELLAQQ 138 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHHHhC
Confidence 355778888999999999999999999999999999999998874 4544454444333 88999999999999887
Q ss_pred CCCchhHHHHHHHH--------hhcCCChhHHHHhhhhcCCCC--CccHHHH-HHHHHHcCCcChhhHHHHHHHHHHcCC
Q 047571 138 LENNGFLRTKLVKM--------YTSCGSFEDAEKVFDESSSES--VYPWNAL-LRGAVIAGKKRYRGVLFNYMKMRELGV 206 (681)
Q Consensus 138 ~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~--~~~~~~l-l~~~~~~~~~~~~~a~~~~~~m~~~g~ 206 (681)
+-+..++..+... |.+.++..++++ .....++ ....... ...|.+.+ ++++++..+.++.+.+.
T Consensus 139 -P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~--dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 139 -KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLK--QWSQADTLYNEARQQNT 213 (987)
T ss_pred -CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHh--CHHHHHHHHHHHHhcCC
Confidence 5556666666665 777777777776 3333343 3333333 77888888 99999999999999863
Q ss_pred CCChhhHHHHHHHhhc-cCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC-----CChhh--
Q 047571 207 QLNVYTFSCVIKSFAG-ASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD-----RDIVV-- 278 (681)
Q Consensus 207 ~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~-- 278 (681)
. +..-...+-.+|.. .++ +.+..+++. .+..+......+...|.+.|+.++|.+.++++.. ++..+
T Consensus 214 l-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 214 L-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred C-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 3 33345556567776 466 667666442 3446788889999999999999999999998764 11111
Q ss_pred ----------------------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh--hhhhhc
Q 047571 279 ----------------------------WGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIG--EAWARK 328 (681)
Q Consensus 279 ----------------------------~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~ 328 (681)
.-.++..+.+.+.++.+.++. .+.|..... .++... ..+...
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~r~~~~~~~~~~~ 359 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML--EERYAVSVATRNKA 359 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--HHHHhhccccCchh
Confidence 112245566667776555442 244444432 332222 234555
Q ss_pred ccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC-C-----ChhhHHHHHHHHHhCCC---hHHHHH
Q 047571 329 LGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE-R-----NEILWTALMSGYVSNGR---LEQALR 399 (681)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~~~---~~~A~~ 399 (681)
++...+..+.+. .+.+....--+.-...+.|+.++|.++|+.... + +....+-++..|.+.+. ..++..
T Consensus 360 ~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 360 EALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 555555555554 333444444555566788999999999988765 2 23344566777777665 333333
Q ss_pred H----------------------HHHHHHc-CcCC---CHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHH
Q 047571 400 S----------------------IAWMQQE-GFRP---DVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITS 453 (681)
Q Consensus 400 ~----------------------~~~m~~~-g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 453 (681)
+ .+..... +..| +...|..+..++.. ++.++|...+....... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 3 1111111 1223 44555555555555 78888999888877654 55544444
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchH
Q 047571 454 LMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALK 531 (681)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 531 (681)
+...+...|++++|...|+++.. ++...+..+..++.+.|+.++|...+++..+.. +.+...+..+.......|+++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHH
Confidence 55556789999999999998764 444556677788899999999999999998864 223333334444555669999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 532 LGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 532 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
+|...+++.++.. |+...+..+..++.+.|++++|...+++... |+ ...++.+..++...|++++|++.+++..+
T Consensus 594 eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 594 LALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999865 4688899999999999999999999998887 54 66788888999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 609 GGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 609 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
.. +-+...+..+..++...|++++|+..+++..+ ..|+ ..+.......+.+..+++.|.+-+++--
T Consensus 672 l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~---l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 672 GL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID---DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 53 34788899999999999999999999998875 3565 5667777888888888999988776643
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=1.2e-17 Score=152.67 Aligned_cols=442 Identities=12% Similarity=0.090 Sum_probs=303.7
Q ss_pred cccCCCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH--hcCChhHH-HHHHHHH
Q 047571 57 EKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACV--RTRSLVEG-RLIHTHI 133 (681)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~ 133 (681)
..+.|....-.++.....-+.++ .+..+|...++--+|+.|...|++.+...-..|++..+ .+.++.-+ ++.|-.|
T Consensus 101 ~l~~F~P~~l~~~~~V~~E~nL~-kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~ 179 (625)
T KOG4422|consen 101 QLPVFRPRHLADPLQVETENNLL-KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGM 179 (625)
T ss_pred cccccCchhcCCchhhcchhHHH-HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhc
Confidence 33445555555555555545544 45678899999999999999998888877766665433 33343332 4556666
Q ss_pred HHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhH
Q 047571 134 RINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTF 213 (681)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 213 (681)
...| +.+..+| +.|++.+ ++-+.......++..+|.|+++.. ..+.|.+++.+..+...+.+..+|
T Consensus 180 ~~~~-E~S~~sW--------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~--~~ERA~~L~kE~~~~k~kv~~~aF 245 (625)
T KOG4422|consen 180 RNFG-EDSTSSW--------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFS--SLERARELYKEHRAAKGKVYREAF 245 (625)
T ss_pred cccc-ccccccc--------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHH--hHHHHHHHHHHHHHhhheeeHHhh
Confidence 6655 4444433 3455544 555666677788999999999998 999999999999999899999999
Q ss_pred HHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChH
Q 047571 214 SCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRW 293 (681)
Q Consensus 214 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 293 (681)
|.+|.+-. +....+++.+|....+.||..|+|+++.+..+.|+++.|.+
T Consensus 246 N~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~--------------------------- 294 (625)
T KOG4422|consen 246 NGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK--------------------------- 294 (625)
T ss_pred hhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------
Confidence 99998754 22337899999999999999999999999999999988876
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcc-cchhhhhhhhc-------cCCCCCchHHhHHHHHHHhcCCHHH
Q 047571 294 EALDCARWMIREGIYPNSVVLTILLPVIGEAWARKL-GQEVHAYVLKN-------ERYSEELFVRSSLVDMYCKCRDMNS 365 (681)
Q Consensus 294 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (681)
.|++++.+|++.|+.|...+|..+|..+++.++..+ +..++..+... +..+.|...|...+..|.+..+.+.
T Consensus 295 aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~L 374 (625)
T KOG4422|consen 295 AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLEL 374 (625)
T ss_pred HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHH
Confidence 356788889999999999999999998888877644 34444444332 1233455667777888888899888
Q ss_pred HHHHHhhcCCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHH
Q 047571 366 AWRVFYETEER-----------NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKE 434 (681)
Q Consensus 366 a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 434 (681)
|..+-.-.... ...-|..+....|.....+.-+..|+.|.-.-+-|+..+...++++....+.++-..+
T Consensus 375 A~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipR 454 (625)
T KOG4422|consen 375 AYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPR 454 (625)
T ss_pred HHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHH
Confidence 88876555432 1234667788888888999999999999988888999999999999999999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcC-Ch---HH----------HHHHHhh-------CCC--CCcchHHHHHHHHHh
Q 047571 435 IHAYAVKNQFLPNVSIITSLMIMYSKCG-VL---DY----------SLKLFDE-------MEV--RNVISWTAMIDSCIE 491 (681)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~---~~----------a~~~~~~-------~~~--~~~~~~~~li~~~~~ 491 (681)
+|.+++..|..-....-.-++..+++.. ++ +. |..+++. +.+ -.....+.+.-.+.+
T Consensus 455 iw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R 534 (625)
T KOG4422|consen 455 IWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLR 534 (625)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHH
Confidence 9999999886555444444444444433 11 00 0011110 111 122334444445556
Q ss_pred cCChhHHHHHHHHhHhCC----CCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcC
Q 047571 492 NGRLDDALGVFRSMQLSK----HRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKD 544 (681)
Q Consensus 492 ~~~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 544 (681)
.|+.++|.+++.-+.+++ ..|......-+++.....++...|...++-+...+
T Consensus 535 ~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 535 AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 666666666666654433 12333333344444455555555555555554443
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=9.1e-17 Score=162.13 Aligned_cols=544 Identities=13% Similarity=0.058 Sum_probs=307.7
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCC--CCchhHHHHHHHHhhcCCChhHHHHhh
Q 047571 88 LKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGL--ENNGFLRTKLVKMYTSCGSFEDAEKVF 165 (681)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~ 165 (681)
.+.|...|....+.. +++.-.+..-.......+++..|..+|........ .||+.+ .+..++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 588999999988764 44554444334444567899999999999776543 455543 3446778899999999999
Q ss_pred hhcCCCCCccHHHHHHH-HHHc--C-CcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCC
Q 047571 166 DESSSESVYPWNALLRG-AVIA--G-KKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGF 241 (681)
Q Consensus 166 ~~~~~~~~~~~~~ll~~-~~~~--~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 241 (681)
....+-|+..-++++.- .... . ...+..++..+...-... .-|+...+.|.+.+.-.|++..+..+...+.....
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 98887766555544432 1111 1 113444555544433221 23556778888889999999999999988877653
Q ss_pred CCC--cHHHhHHHHHHHhcCChHHHHHHHhccCCC--C--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhH
Q 047571 242 VDY--LILRTSLIDMYFKCGKIKLARRVFDETGDR--D--IVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN-SVVL 314 (681)
Q Consensus 242 ~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~ 314 (681)
... ...|-.+.++|-..|++++|...|.+.... | +..+--+...+.+.|+++.+...|+...+. .|| ..|.
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm 379 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETM 379 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHH
Confidence 222 345666888999999999999999776552 2 344556788899999999999999998875 344 4455
Q ss_pred HHHHHHHhhhh----hhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcC--------CCChhhHH
Q 047571 315 TILLPVIGEAW----ARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETE--------ERNEILWT 382 (681)
Q Consensus 315 ~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~ 382 (681)
..|-..|...+ ..+.|..++....+. .+.|...|-.+...+...+- -.++..|.... .......|
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 55555555443 345555555555554 35566666666655544332 22233332221 23555667
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHc---CcCCCHH------HHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHH
Q 047571 383 ALMSGYVSNGRLEQALRSIAWMQQE---GFRPDVV------TVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITS 453 (681)
Q Consensus 383 ~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 453 (681)
.+...+...|++..|...|...... ...+|.. +-..+.......++.+.|.+.|..+.+.. +.-+..|-.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylR 535 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLR 535 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHH
Confidence 7777777777777777777766544 1223331 12223334445556677777777666543 223333444
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCHHHHHHHHHHhccc--
Q 047571 454 LMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSK-HRPDSVAMARMLSVSGQL-- 527 (681)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~-- 527 (681)
+.......+...+|...+.++.. .++..++.+...+.+...+..|.+-|....+.- ..+|..+...|.+.|...
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 43333334556666666666553 344455555556666666666666555444321 124555544444433211
Q ss_pred ----------cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCC
Q 047571 528 ----------KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYND 594 (681)
Q Consensus 528 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 594 (681)
+..++|+++|.++++.. +-+....+-+.-+++..|++.+|..+|.++.+ ....+|-.+...|...|
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHH
Confidence 12334444444444432 12233334444444444555555555544444 12344444445555555
Q ss_pred ChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571 595 LCQEALSLFDKMRNGGF-TPNHFTFKVLLSICNQAGFADEACRIFNVMS 642 (681)
Q Consensus 595 ~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (681)
++..|+++|+...+.-. ..+......|..++.+.|++.+|.+.+....
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55555555544333321 1233444444445555555555544444433
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.4e-16 Score=160.72 Aligned_cols=536 Identities=13% Similarity=0.044 Sum_probs=383.3
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 047571 61 FPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQ--GIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGL 138 (681)
Q Consensus 61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 138 (681)
|..++...|+|..++-.-.......|++..|+.+|...... ..+||+. -.+..++.+.|+.+.|...|......+
T Consensus 153 F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLd- 229 (1018)
T KOG2002|consen 153 FHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLD- 229 (1018)
T ss_pred HHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcC-
Confidence 44556667777777777777777899999999999997654 3455554 334466788999999999999998776
Q ss_pred CCchhHHHHHHHHhhcC---CChhHHHHhhhhcC---CCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCC--CCh
Q 047571 139 ENNGFLRTKLVKMYTSC---GSFEDAEKVFDESS---SESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQ--LNV 210 (681)
Q Consensus 139 ~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~ 210 (681)
+-++.++..|.-.-... ..+..+..++...- ..++...+.|-..|.-.+ ++..++.+...+...... .-.
T Consensus 230 p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~--dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK--DYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc--cHHHHHHHHHHHHHhhhhhHHHH
Confidence 34444444443333333 33455555555432 456677888888888888 999999999988775421 123
Q ss_pred hhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC---ChhhHHHHHHHHH
Q 047571 211 YTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR---DIVVWGSMIAGFA 287 (681)
Q Consensus 211 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~ 287 (681)
..|-.+.+++-..|+++.|.+.|.+..+..-.--...+-.|.+.|.+.|+++.+...|+.+... +..+...+...|.
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 3688889999999999999999988776542222344556889999999999999999988763 4455566666666
Q ss_pred hcC----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhh----hhccCCCCCchHHhHHHHHHHh
Q 047571 288 HNR----LRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYV----LKNERYSEELFVRSSLVDMYCK 359 (681)
Q Consensus 288 ~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~ 359 (681)
..+ ..+.|..++.+..+.- ..|...|..+...+.....+.. ...+..+ ... +.++.+...|.+...+..
T Consensus 388 ~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 388 HSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESK-GKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHH
Confidence 664 4566666666655542 3455667666666655544333 4444433 333 455778888999999999
Q ss_pred cCCHHHHHHHHhhcCCC-------Ch------hhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHH-Hhhc
Q 047571 360 CRDMNSAWRVFYETEER-------NE------ILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIP-VCSQ 425 (681)
Q Consensus 360 ~~~~~~a~~~~~~~~~~-------~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~ 425 (681)
.|++..|...|...... +. .+--.+...+-..++++.|.+.|..+... .|.-+....-+. ....
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARD 542 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHh
Confidence 99999999999876542 22 12223455566678999999999999886 466555443333 3334
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcchHHHHHHHHHh---------
Q 047571 426 LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV-----RNVISWTAMIDSCIE--------- 491 (681)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~--------- 491 (681)
.+...+|...+++....+ ..++..++.+...+.+...+..|.+-|..+.+ +|..+.-+|.+.|.+
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 577889999998887654 45556666677788888888888875554442 355555555554442
Q ss_pred ---cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047571 492 ---NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECA 568 (681)
Q Consensus 492 ---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 568 (681)
.+..++|+++|.+..... +-|...-+.+.-.++..|++..|..+|.++.+... -...+|-.+.++|..+|++-.|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHH
Confidence 234778999999888763 44556667777778899999999999999998653 3567888999999999999999
Q ss_pred HHHhhhCCC-----CChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571 569 KLVFDAVPV-----KGSITWTAIIEAYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 569 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 609 (681)
.++|+.... .+....+.|.+++...|.+.+|.+.+......
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999987665 45778899999999999999999999888875
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=7.6e-18 Score=161.08 Aligned_cols=432 Identities=12% Similarity=0.146 Sum_probs=250.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhc
Q 047571 75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTS 154 (681)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (681)
...+.....+.|++.+|++..+..-+.+ +-+......+-..+.+..+.+.....-....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 5667788889999999999888776554 2233333344444555555555444433333332 4455677778888877
Q ss_pred CCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCC-ChhhHHHHHHHhhccCchhhhHHHH
Q 047571 155 CGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQL-NVYTFSCVIKSFAGASALMQGLKTH 233 (681)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 233 (681)
.|++++|+.+++.+. +. +| ....|..+..++...|+.+.|.+.|
T Consensus 129 rg~~~~al~~y~~ai---------------------------------el--~p~fida~inla~al~~~~~~~~a~~~~ 173 (966)
T KOG4626|consen 129 RGQLQDALALYRAAI---------------------------------EL--KPKFIDAYINLAAALVTQGDLELAVQCF 173 (966)
T ss_pred hchHHHHHHHHHHHH---------------------------------hc--CchhhHHHhhHHHHHHhcCCCcccHHHH
Confidence 787777777776543 22 22 2224444444555555555555555
Q ss_pred HHHHHhCCCCCcH-HHhHHHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047571 234 ALLIKNGFVDYLI-LRTSLIDMYFKCGKIKLARRVFDETGD--R-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYP 309 (681)
Q Consensus 234 ~~~~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 309 (681)
.+..+. .|+.. ..+.+-..+...|++++|...+.+..+ | =.+.|+.|...+-..|+...|++.|++.++. .|
T Consensus 174 ~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP 249 (966)
T KOG4626|consen 174 FEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DP 249 (966)
T ss_pred HHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CC
Confidence 444432 23222 122223333345556666555544333 2 2345666666666777777777777666542 23
Q ss_pred ChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHH
Q 047571 310 NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE--R-NEILWTALMS 386 (681)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~ 386 (681)
+- ...|-.|-..|...+.++.|...+.+... | ..+.+..+..
T Consensus 250 ~f-----------------------------------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~ 294 (966)
T KOG4626|consen 250 NF-----------------------------------LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLAC 294 (966)
T ss_pred cc-----------------------------------hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEE
Confidence 21 11122333344444444444444443321 2 3445555555
Q ss_pred HHHhCCChHHHHHHHHHHHHcCcCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 047571 387 GYVSNGRLEQALRSIAWMQQEGFRPD-VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLD 465 (681)
Q Consensus 387 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (681)
.|-.+|+.+.|+..+++..+. .|+ ...|+.+..++-..|++.+|.+.+....... +......+.|..+|...|.++
T Consensus 295 iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred EEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccch
Confidence 666677777777777776664 333 3556777777777777777777777766653 334555666777777777777
Q ss_pred HHHHHHhhCCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHHHHHHHHHHH
Q 047571 466 YSLKLFDEMEV--RN-VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKLGKEIHGQVL 541 (681)
Q Consensus 466 ~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 541 (681)
+|..+|....+ |. ...++.|...|-++|++++|+..|++..+ +.|+.. .|+.+...|...|+.+.|.+.+...+
T Consensus 372 ~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 372 EATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 77777776665 22 23567777777777888888888777766 456543 56666666666677777777776666
Q ss_pred HcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHH
Q 047571 542 KKDFASV-PFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEA 589 (681)
Q Consensus 542 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~ 589 (681)
..+ |. .+..+.|...|...|++.+|..-+++... || ...|..++.+
T Consensus 450 ~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 450 QIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred hcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 532 33 44556666666666666666666666555 44 3344444433
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.6e-18 Score=175.38 Aligned_cols=291 Identities=13% Similarity=0.081 Sum_probs=179.0
Q ss_pred HHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC---HHHHHHHHHHhhccCCh
Q 047571 356 MYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD---VVTVATVIPVCSQLKAL 429 (681)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~ 429 (681)
.+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344556666666666666543 334566666666677777777777766665432211 13455556666666777
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC--Cc------chHHHHHHHHHhcCChhHHHHH
Q 047571 430 NHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR--NV------ISWTAMIDSCIENGRLDDALGV 501 (681)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~------~~~~~li~~~~~~~~~~~A~~~ 501 (681)
+.|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+. +. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777776666542 344556666666666777777777666666431 11 1234455556667777777777
Q ss_pred HHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC
Q 047571 502 FRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG 579 (681)
Q Consensus 502 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~ 579 (681)
|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.. |+
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 77766542 2234455556666666777777777777766543333345566666777777777777777776554 55
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHhhhcCCCCCCh
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ---AGFADEACRIFNVMSRGYKIEALE 651 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 651 (681)
...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.+++.|.+. ++.|++
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCC
Confidence 555566777777777777777777777663 5666677666665553 44677777777777654 444443
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=4.8e-18 Score=171.83 Aligned_cols=292 Identities=13% Similarity=0.079 Sum_probs=194.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCC
Q 047571 284 AGFAHNRLRWEALDCARWMIREGIYPN-SVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRD 362 (681)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 362 (681)
..+...|++++|+..|+++.+.+ |+ ..++. .+...+...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~------------------------------------~la~~~~~~g~ 84 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD--PETVELHL------------------------------------ALGNLFRRRGE 84 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC--cccHHHHH------------------------------------HHHHHHHHcCc
Confidence 34556677777777777777642 32 22333 33444444444
Q ss_pred HHHHHHHHhhcCCCC-------hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHH
Q 047571 363 MNSAWRVFYETEERN-------EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEI 435 (681)
Q Consensus 363 ~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 435 (681)
+++|..+++.+.... ...+..+...|.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.
T Consensus 85 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 85 VDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDV 163 (389)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHH
Confidence 444444444433211 1245556666666677777777776666542 23455666666666777777777777
Q ss_pred HHHHHHhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 047571 436 HAYAVKNQFLPNV----SIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLS 508 (681)
Q Consensus 436 ~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 508 (681)
++.+.+.+..+.. ..+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|.+.++++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7766654422211 1344566666777778888777777654 2 2345666777788888888888888888765
Q ss_pred CCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhHHHH
Q 047571 509 KHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSITWTAI 586 (681)
Q Consensus 509 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l 586 (681)
+......++..+..++...|+.++|...++.+.+.. |+...+..++..+.+.|++++|..+++++.. |+...++.+
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l 321 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRL 321 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 322223456777788888888888888888877753 4555667888889999999999999987666 888888888
Q ss_pred HHHHHc---CCChHHHHHHHHHHHhCCCCCCHH
Q 047571 587 IEAYGY---NDLCQEALSLFDKMRNGGFTPNHF 616 (681)
Q Consensus 587 ~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~ 616 (681)
+..+.. .|+.++++.++++|.+.++.|++.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 877664 568999999999999988777665
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=1.6e-17 Score=158.92 Aligned_cols=367 Identities=13% Similarity=0.146 Sum_probs=258.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHH-hHHHH
Q 047571 278 VWGSMIAGFAHNRLRWEALDCARWMIREGIYP-NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVR-SSLVD 355 (681)
Q Consensus 278 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~ 355 (681)
+|..+...+-..|++++|+.+++.+.+. +| ....|..+..++...|+.+.|...|....+. .|+.... +.+-.
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhH
Confidence 3444444444444444444444444432 22 1233444444444444444444444433322 2222221 22333
Q ss_pred HHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC-HHHHHHHHHHhhccCChhH
Q 047571 356 MYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD-VVTVATVIPVCSQLKALNH 431 (681)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~ 431 (681)
..-..|++.+|...+.+..+. =.+.|+.|.-.+..+|+...|+..|++.... .|+ ...|..|-..+...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 344467777777777665543 2457888888888888888888888887764 444 3456677777888888888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 047571 432 GKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RN-VISWTAMIDSCIENGRLDDALGVFRSMQLS 508 (681)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 508 (681)
|...+....... +.....+..+...|...|.++.|+..+++..+ |+ ...|+.|..++-..|++.+|.+.|.+....
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 888887766543 33556677777888889999999999988876 43 357899999999999999999999888875
Q ss_pred CCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhH
Q 047571 509 KHRPD-SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASV-PFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITW 583 (681)
Q Consensus 509 g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~ 583 (681)
.|+ ....+.|...+...|.++.|..+|....+- -|. ....+.|...|...|++++|...+++..+ |+ ..+|
T Consensus 350 --~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 350 --CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred --CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 343 346778888899999999999999888764 233 55678889999999999999999998887 55 5689
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHH
Q 047571 584 TAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDIL 661 (681)
Q Consensus 584 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 661 (681)
+.+...|...|+.+.|++.+.+... +.| =...++.|...|...|+..+|++-++... +++|| +..|..++.++
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL---klkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL---KLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH---ccCCCCchhhhHHHHHH
Confidence 9999999999999999999999988 456 45778899999999999999999998665 56777 55666666654
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=4.2e-16 Score=165.91 Aligned_cols=249 Identities=11% Similarity=-0.015 Sum_probs=177.1
Q ss_pred CCChHHHHHHHHHHHHcC-cCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 047571 391 NGRLEQALRSIAWMQQEG-FRPD-VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL 468 (681)
Q Consensus 391 ~~~~~~A~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (681)
.+++++|.+.|+...+.+ ..|+ ...+..+...+...|++++|...++...+.. +.....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467778888888877654 2332 3445556666677888888888888877653 233556777777788888888888
Q ss_pred HHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571 469 KLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDF 545 (681)
Q Consensus 469 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 545 (681)
..|+++.+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++..++..
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 88877654 245677777778888888888888888887753 3345556667777778888888888888877643
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CCh-h-------hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH
Q 047571 546 ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGS-I-------TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH 615 (681)
Q Consensus 546 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 615 (681)
+.++.++..+..++...|++++|...|++... |+. . .++..+..+...|++++|.+++++..+.. +.+.
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~ 542 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECD 542 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcH
Confidence 33567778888888888888888888877655 221 1 12222233444689999999999888753 3355
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 616 FTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
..+..+...+.+.|++++|+++|++..+
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6788888999999999999999988765
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=2.9e-16 Score=167.09 Aligned_cols=420 Identities=11% Similarity=-0.031 Sum_probs=289.4
Q ss_pred HHHhHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHh
Q 047571 246 ILRTSLIDMYFKCGKIKLARRVFDETGD--RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN-SVVLTILLPVIG 322 (681)
Q Consensus 246 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 322 (681)
..+......+.+.|++++|++.|++... |+...|..+..+|.+.|++++|++.++...+. .|+ ...+..+..++.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 3455677888899999999999988654 57778888889999999999999999988875 343 456777778888
Q ss_pred hhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 047571 323 EAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIA 402 (681)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 402 (681)
..|+++.|..-+..+....++... ....++..+........+...++.-.. +...+..+.. +...........-+.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE--QSAQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH--HHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhh
Confidence 888888888777665544232221 111222222221122333333332221 2222222222 222212222211111
Q ss_pred HHHHcCcCCCH-HHHHHHH---HHhhccCChhHHHHHHHHHHHhC-CCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 047571 403 WMQQEGFRPDV-VTVATVI---PVCSQLKALNHGKEIHAYAVKNQ-FLP-NVSIITSLMIMYSKCGVLDYSLKLFDEMEV 476 (681)
Q Consensus 403 ~m~~~g~~p~~-~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 476 (681)
.-.+ ..+.. ..+..+. .-....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...+++..+
T Consensus 282 ~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 282 DSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred cccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 11111 0111111 01133568999999999998765 223 455678888889999999999999999875
Q ss_pred --CC-cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHH
Q 047571 477 --RN-VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAA 553 (681)
Q Consensus 477 --~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 553 (681)
|+ ...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.++.. +.+...+.
T Consensus 360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~ 437 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHI 437 (615)
T ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHH
Confidence 43 4477888888999999999999999998763 3456788888889999999999999999998864 23467788
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH-----H-HHHHHHHH
Q 047571 554 ENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH-----F-TFKVLLSI 624 (681)
Q Consensus 554 ~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~-~~~~l~~~ 624 (681)
.+..++.+.|++++|...+++... | +...|+.+...+...|++++|++.|++..+..-..+. . .+...+..
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 889999999999999999998766 4 4678899999999999999999999999885311111 1 11222223
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 625 CNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 625 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
+...|++++|.+++++..+. .|+ ...+..++.++.+.|++++|++++++..
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l---~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALII---DPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34469999999999987653 344 5578899999999999999999998754
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=7.3e-15 Score=134.77 Aligned_cols=424 Identities=14% Similarity=0.099 Sum_probs=284.3
Q ss_pred CccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhh--ccCchhh-hHHHHHHHHHhCCCCCcHHHh
Q 047571 173 VYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFA--GASALMQ-GLKTHALLIKNGFVDYLILRT 249 (681)
Q Consensus 173 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~-a~~~~~~~~~~g~~~~~~~~~ 249 (681)
+.+-|.|+... ..+ ...++.-+|+.|+..|+..+...--.+++..+ +..++.- -++-|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~kmI-S~~--EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSR--EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW- 190 (625)
T ss_pred hcchhHHHHHH-hhc--ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-
Confidence 34466666544 444 68888889999999988777766555555433 2222222 22344455555422 22222
Q ss_pred HHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcc
Q 047571 250 SLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKL 329 (681)
Q Consensus 250 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 329 (681)
+.|.+.+ ++-+...+...+|..||.+.|+-...+.|.+++++-.....+.+..+||.+|.+-.-. .
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~ 256 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----V 256 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----c
Confidence 3343333 5556666778899999999999999999999999999888899999999988765433 2
Q ss_pred cchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCc
Q 047571 330 GQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGF 409 (681)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 409 (681)
..++..+|... ...||..++|+++.+..+.|+++.|.. .|.+++.+|++-|+
T Consensus 257 ~K~Lv~EMisq-km~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGV 308 (625)
T KOG4422|consen 257 GKKLVAEMISQ-KMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGV 308 (625)
T ss_pred cHHHHHHHHHh-hcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCC
Confidence 25666677666 777777777777777777777665533 57788999999999
Q ss_pred CCCHHHHHHHHHHhhccCChhH-HHHHHHHHHH----hCCCC----ChhHHHHHHHHHHhcCChHHHHHHHhhCCC----
Q 047571 410 RPDVVTVATVIPVCSQLKALNH-GKEIHAYAVK----NQFLP----NVSIITSLMIMYSKCGVLDYSLKLFDEMEV---- 476 (681)
Q Consensus 410 ~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---- 476 (681)
.|...+|..+|.-+++.++..+ +..++.++.. ..++| +...|..-+..|....+.+-|.++-.-...
T Consensus 309 ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~ 388 (625)
T KOG4422|consen 309 EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW 388 (625)
T ss_pred CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch
Confidence 9999999999999998887754 4444444443 22333 445566778888888888888887665543
Q ss_pred ----CC---cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCCh
Q 047571 477 ----RN---VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVP 549 (681)
Q Consensus 477 ----~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 549 (681)
++ ..-|..+....|.....+..+..|+.|+-+-+-|+..+...++++....+.++-..++|.+++..|.....
T Consensus 389 ~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 389 KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 22 23466778888889999999999999999888999999999999999999999999999999998877666
Q ss_pred hHHHHHHHHHHhcC-CH--------H-----HHHHHhh-------hCCCC--ChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 047571 550 FVAAENIKMYGMCG-FL--------E-----CAKLVFD-------AVPVK--GSITWTAIIEAYGYNDLCQEALSLFDKM 606 (681)
Q Consensus 550 ~~~~~l~~~~~~~g-~~--------~-----~a~~~~~-------~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m 606 (681)
.....+...+++.. +. . -|..+++ ++... .....+..+-.+.+.|+.++|.+++.-+
T Consensus 469 ~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 469 DLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 66666665555543 11 0 0111111 11111 1233444555555666666666666665
Q ss_pred HhCCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 607 RNGGF----TPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 607 ~~~g~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.+++- .|......-+++.-....+...|+.+++.|..
T Consensus 549 ~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 549 LRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 43331 12233333445555555666666666666643
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=3.5e-16 Score=165.69 Aligned_cols=325 Identities=9% Similarity=-0.084 Sum_probs=231.2
Q ss_pred hhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHH
Q 047571 311 SVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSG 387 (681)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~ 387 (681)
......++..+.+.|+.+.|..++..+... .+.+......++.+....|+++.|...++.+... +...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 344556677788888888888888888776 4444445555666677788888888888887652 45677778888
Q ss_pred HHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 047571 388 YVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYS 467 (681)
Q Consensus 388 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 467 (681)
+...|++++|...+++..... +.+...+..+...+...|+.++|...++.+......+ ...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHH
Confidence 888888888888888887752 2234566677777888888888888888776654322 2233223 346778888888
Q ss_pred HHHHhhCCCC----CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHH----HHHHHHH
Q 047571 468 LKLFDEMEVR----NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKL----GKEIHGQ 539 (681)
Q Consensus 468 ~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~ 539 (681)
...++.+.+. +...+..+..++.+.|++++|+..++++.+.. +.+...+..+...+...|++++ |...++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 8888876542 22334445667778888888888888888754 3345566667777788888775 7788887
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH-
Q 047571 540 VLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH- 615 (681)
Q Consensus 540 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~- 615 (681)
+.+.. +.+...+..+...+...|++++|...+++... |+ ...+..+..++...|++++|+..++++.+. .|+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~ 352 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTS 352 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence 77754 23567778888888888888888888887666 43 456667777888888888888888888774 4443
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 616 FTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
..+..+..++...|++++|++.|+...+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33444566778888888888888877654
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=1e-14 Score=158.18 Aligned_cols=394 Identities=11% Similarity=-0.016 Sum_probs=198.1
Q ss_pred HHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcC
Q 047571 180 LRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCG 259 (681)
Q Consensus 180 l~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 259 (681)
+......| +.++|+.++.+..... +.+...+..+...+.+.|++++|.++++...+.. +.+...+..+...+...|
T Consensus 22 ~~ia~~~g--~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 22 LQIALWAG--QDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHcC--CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 33444444 5555555555544311 2222234455555555555555555555544432 222333444445555555
Q ss_pred ChHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhh
Q 047571 260 KIKLARRVFDETGD--R-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAY 336 (681)
Q Consensus 260 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 336 (681)
+.++|+..+++... | +.. +..+...+...|+.++|+..++++.+. .|
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P--------------------------- 147 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--AP--------------------------- 147 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CC---------------------------
Confidence 55555555554432 1 223 444444555555555555555555442 22
Q ss_pred hhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChh--------hHHHHHHHHH-----hCCCh---HHHHHH
Q 047571 337 VLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEI--------LWTALMSGYV-----SNGRL---EQALRS 400 (681)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~li~~~~-----~~~~~---~~A~~~ 400 (681)
.+...+..+...+...+..+.|...++.... ++. ....+++... ..+++ ++|++.
T Consensus 148 --------~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 148 --------QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred --------CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 2223333444455555666666666655444 110 1111111111 11122 556666
Q ss_pred HHHHHHc-CcCCCHH-HHH----HHHHHhhccCChhHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChHHHHHHHhh
Q 047571 401 IAWMQQE-GFRPDVV-TVA----TVIPVCSQLKALNHGKEIHAYAVKNQFL-PNVSIITSLMIMYSKCGVLDYSLKLFDE 473 (681)
Q Consensus 401 ~~~m~~~-g~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 473 (681)
++.+.+. ...|+.. .+. ..+.++...|+.++|...|+.+.+.+.+ |+. ....+...|...|++++|+..|++
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 6666543 1122211 111 0122334456666666666666654421 211 111234456666666666666665
Q ss_pred CCCCC-------cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571 474 MEVRN-------VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKLGKEIHGQVLKKDF 545 (681)
Q Consensus 474 ~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 545 (681)
+.+.+ ...+..+..++...|++++|.++++++.... |... .+.. ...
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~--P~~~~~~~~-----------------------~~~ 352 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS--PPFLRLYGS-----------------------PTS 352 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC--CceEeecCC-----------------------CCC
Confidence 54311 1123344445556666666666666665431 1100 0000 000
Q ss_pred CCC---hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHH
Q 047571 546 ASV---PFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTF 618 (681)
Q Consensus 546 ~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~ 618 (681)
.|+ ...+..+...+...|++++|.++++++.. |+ ...+..+...+...|++++|++.+++..+. .| +...+
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~ 430 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLE 430 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHH
Confidence 122 12344556666777777777777776655 33 556777777788888888888888888774 45 45666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 619 KVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
..++..+...|++++|.++++.+.+.
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 67777778888888888888887764
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=2.2e-15 Score=163.20 Aligned_cols=389 Identities=9% Similarity=-0.020 Sum_probs=205.6
Q ss_pred HHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhhh
Q 047571 250 SLIDMYFKCGKIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN-SVVLTILLPVIGEAW 325 (681)
Q Consensus 250 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~ 325 (681)
-.+......|+.++|++++.+... .+...+..+...+...|++++|..++++..+. .|+ ......+...+...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence 334444445555555555544332 12223444445555555555555555554432 122 222222223333333
Q ss_pred hhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHH
Q 047571 326 ARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIA 402 (681)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~ 402 (681)
+.++|...++.+.+. .+.+.. +..+...+...|+.++|...++++.+. +...+..+..++...+..+.|+..++
T Consensus 98 ~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 333333333333332 233334 556666666677777777777666542 34445555666666666666666665
Q ss_pred HHHHcCcCCCHH------HHHHHHHHhh-----ccCCh---hHHHHHHHHHHHh-CCCCChh-HHHHHHHHHHhcCChHH
Q 047571 403 WMQQEGFRPDVV------TVATVIPVCS-----QLKAL---NHGKEIHAYAVKN-QFLPNVS-IITSLMIMYSKCGVLDY 466 (681)
Q Consensus 403 ~m~~~g~~p~~~------~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~ 466 (681)
.... .|+.. ....++.... ..+++ +.|.+.++.+.+. ...|+.. .+..
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~------------- 238 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR------------- 238 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH-------------
Confidence 4432 22210 0011111110 01111 3333333333322 1111110 0000
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571 467 SLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHR-PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDF 545 (681)
Q Consensus 467 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 545 (681)
.....+.++...|++++|+..|+++.+.+.. |+. ....+..++...|++++|...++.+.+...
T Consensus 239 --------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 239 --------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred --------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 0000022233445555566555555554321 221 111134455555566666665555544321
Q ss_pred CC---ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-------------C---hhhHHHHHHHHHcCCChHHHHHHHH
Q 047571 546 AS---VPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-------------G---SITWTAIIEAYGYNDLCQEALSLFD 604 (681)
Q Consensus 546 ~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-------------~---~~~~~~l~~~~~~~~~~~~a~~~~~ 604 (681)
.. .......+..++...|++++|..+++.+.. | + ...+..+...+...|+.++|++.++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11 123344445555666666666666665544 2 2 1244567778889999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 605 KMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 605 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
++.... +.+...+..+...+...|++++|++.+++..+. .|+ ...+..++..+.+.|++++|..+++++.
T Consensus 384 ~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l---~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 384 ELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL---EPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999863 557888999999999999999999999988753 465 6778888889999999999999998764
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=2.3e-15 Score=159.52 Aligned_cols=321 Identities=10% Similarity=-0.058 Sum_probs=209.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcC
Q 047571 282 MIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCR 361 (681)
Q Consensus 282 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (681)
++..+.+.|++++|+.+++........+ ...+..+..+....|+.+.|...++.+... .+.+...+..+...+...|
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC
Confidence 3444444455555555544444432221 112222223333444555555555444443 3334445566677777778
Q ss_pred CHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 047571 362 DMNSAWRVFYETEE--R-NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAY 438 (681)
Q Consensus 362 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 438 (681)
++++|...+++... | +...+..+...+...|+.++|...++.+......+ ...+.. +..+...|++++|...++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHHHH
Confidence 88888887777654 2 45677777888888888888888888776653222 222222 2346677888888888887
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhH----HHHHHHHhHhCCCC
Q 047571 439 AVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDD----ALGVFRSMQLSKHR 511 (681)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~g~~ 511 (681)
+.+....++...+..+...+.+.|++++|...+++... | +...+..+...+...|++++ |+..|++..+.. +
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C
Confidence 76654334444455556777788888888888887764 2 44566777788888888875 788888887753 3
Q ss_pred CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhh-HHHHHH
Q 047571 512 PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSIT-WTAIIE 588 (681)
Q Consensus 512 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~l~~ 588 (681)
.+...+..+...+...|++++|...++...+.. +.++..+..+..+|.+.|++++|...++.+.. |+... +..+..
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 345567777788888888888888888888754 22466677788888888888888888887765 54333 334566
Q ss_pred HHHcCCChHHHHHHHHHHHhC
Q 047571 589 AYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 589 ~~~~~~~~~~a~~~~~~m~~~ 609 (681)
++...|+.++|++.|++..+.
T Consensus 361 al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 778889999999999988774
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=4.7e-14 Score=149.65 Aligned_cols=424 Identities=10% Similarity=-0.014 Sum_probs=207.8
Q ss_pred HhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCCh-hhHHHH--HHHHHhcCChHHH
Q 047571 219 SFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDI-VVWGSM--IAGFAHNRLRWEA 295 (681)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l--i~~~~~~~~~~~a 295 (681)
...+.|+++.|...|++..+....-...++ .++..+...|+.++|+..+++...++. ..+..+ ...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 445778888888888888765422112233 777778888888888888888876633 333333 4467777888888
Q ss_pred HHHHHHHHHcCCCCC-hhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcC
Q 047571 296 LDCARWMIREGIYPN-SVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETE 374 (681)
Q Consensus 296 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 374 (681)
+++|+++.+.. |+ ...+..+...+...++.++|.+.+..+.+. .|+...+..++..+...++..+|+..++++.
T Consensus 122 iely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 122 LALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888888753 33 233333334444444444444444444332 1222222222222222333333444444443
Q ss_pred CC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHH
Q 047571 375 ER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSII 451 (681)
Q Consensus 375 ~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 451 (681)
+. +...+..++.++.+.|-...|+++..+-.+. +.+. ....+-.. . ..+.++.+..++.
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~--~~~~l~~~--------~----~a~~vr~a~~~~~--- 258 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE--HYRQLERD--------A----AAEQVRMAVLPTR--- 258 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH--HHHHHHHH--------H----HHHHHhhcccccc---
Confidence 32 2333444444444444444444333321110 0000 00000000 0 0000000000000
Q ss_pred HHHHHHHHhcCCh---HHHHHHHhhCCC-----CCcc-----hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHH
Q 047571 452 TSLMIMYSKCGVL---DYSLKLFDEMEV-----RNVI-----SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMA 518 (681)
Q Consensus 452 ~~l~~~~~~~g~~---~~a~~~~~~~~~-----~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 518 (681)
....++ +.|..-++.+.. |... ..--.+-++...|+..++++.|+.|...|.+....+-.
T Consensus 259 -------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 259 -------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred -------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 000111 122222222211 1111 11122344555566666666666666555443344555
Q ss_pred HHHHHhccccchHHHHHHHHHHHHcCC-----CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-------------
Q 047571 519 RMLSVSGQLKALKLGKEIHGQVLKKDF-----ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K------------- 578 (681)
Q Consensus 519 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------------- 578 (681)
.+.++|...+..++|..++..+..... .++......|.-+|...+++++|..+++.+.. |
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 556666666666666666665554321 11222234555566666666666666655544 1
Q ss_pred C---hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHH
Q 047571 579 G---SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHY 654 (681)
Q Consensus 579 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 654 (681)
| ...+..++..+...|+..+|++.++++.... |-|......+.+.+...|.+.+|.+.++.... +.|+ ....
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~ 487 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES---LAPRSLILE 487 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCccHHHH
Confidence 0 1123334555666677777777777766542 33666666666777777777777776654432 2443 4555
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhc
Q 047571 655 LIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 655 ~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
...+.++...|++++|..+.+.+
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Confidence 55666666667777766655443
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=3.7e-13 Score=142.90 Aligned_cols=448 Identities=11% Similarity=0.021 Sum_probs=259.8
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhH
Q 047571 67 LHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNV--TTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFL 144 (681)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 144 (681)
..|..+......+-...++|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|...+++.. .........
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~ 104 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRG 104 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHH
Confidence 333444555666777889999999999999998764 332 234 88888888999999999999988 111233334
Q ss_pred HHHHHHHhhcCCChhHHHHhhhhcCCCC---CccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhh
Q 047571 145 RTKLVKMYTSCGSFEDAEKVFDESSSES---VYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFA 221 (681)
Q Consensus 145 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 221 (681)
...+...+...|++++|+++++++.+.+ ...+..++..+...+ +.++|++.++++... .|+...+..++..+.
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~--q~~eAl~~l~~l~~~--dp~~~~~l~layL~~ 180 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG--RGGVVLKQATELAER--DPTVQNYMTLSYLNR 180 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC--CHHHHHHHHHHhccc--CcchHHHHHHHHHHH
Confidence 4444668888899999999999887433 233555666677777 888999998887765 566666644444444
Q ss_pred ccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC-ChhhHHHHHHHHHhcCChHHHHHHHH
Q 047571 222 GASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR-DIVVWGSMIAGFAHNRLRWEALDCAR 300 (681)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 300 (681)
..++..+|.+.++++.+.. +.+...+..++.++.+.|-...|.++..+-+.- +...+.-+- .+.|.+
T Consensus 181 ~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~--------~~~~a~--- 248 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE--------RDAAAE--- 248 (822)
T ss_pred hcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH--------HHHHHH---
Confidence 4566656888888888875 445677778888888888888888887764421 111111100 000111
Q ss_pred HHHHcCCCCCh---hhHHHHHHHHhhhhhhcccchhhhhhhhccCC-CCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC
Q 047571 301 WMIREGIYPNS---VVLTILLPVIGEAWARKLGQEVHAYVLKNERY-SEELFVRSSLVDMYCKCRDMNSAWRVFYETEER 376 (681)
Q Consensus 301 ~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 376 (681)
+++.+..++. .-|.. .+.+..-++.+....+. ++....|
T Consensus 249 -~vr~a~~~~~~~~~r~~~----------~d~ala~~~~l~~~~~~~p~~~~~~-------------------------- 291 (822)
T PRK14574 249 -QVRMAVLPTRSETERFDI----------ADKALADYQNLLTRWGKDPEAQADY-------------------------- 291 (822)
T ss_pred -HHhhcccccccchhhHHH----------HHHHHHHHHHHHhhccCCCccchHH--------------------------
Confidence 1111111110 00000 01111111111110000 0000000
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhC-----CCCChhHH
Q 047571 377 NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQ-----FLPNVSII 451 (681)
Q Consensus 377 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 451 (681)
..+.--.+.++...|++.++++.++.|...|.+....+-..+.++|...+++++|..+++.+.... ..++....
T Consensus 292 -~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~ 370 (822)
T PRK14574 292 -QRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDA 370 (822)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHH
Confidence 011223445667778888888888888887766555577777888888888888888888776533 12233334
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcc------------------hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC
Q 047571 452 TSLMIMYSKCGVLDYSLKLFDEMEVRNVI------------------SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPD 513 (681)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 513 (681)
..|..+|...+++++|..+++.+.+..+. .+..++..+...|++.+|++.++++...
T Consensus 371 ~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~----- 445 (822)
T PRK14574 371 DDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST----- 445 (822)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 66777777777777777777776641110 1222333344444455555544444332
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHH
Q 047571 514 SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAY 590 (681)
Q Consensus 514 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~ 590 (681)
. +-+..+...+..++...|++.+|+..++.... |+ ..+....+.++
T Consensus 446 ------------------------------a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 446 ------------------------------A-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred ------------------------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 1 23444555555555555555555555544333 22 33444455555
Q ss_pred HcCCChHHHHHHHHHHHh
Q 047571 591 GYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 591 ~~~~~~~~a~~~~~~m~~ 608 (681)
...+++++|..+.+.+.+
T Consensus 495 l~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 495 MALQEWHQMELLTDDVIS 512 (822)
T ss_pred HhhhhHHHHHHHHHHHHh
Confidence 555666666666665555
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.4e-12 Score=131.63 Aligned_cols=592 Identities=11% Similarity=0.036 Sum_probs=293.1
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571 79 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF 158 (681)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (681)
...+..+|++++|.+++.+..+.. +.....|..|...|-..|+.+++...+-...... +.|...|-.+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 334444577777777777777664 4466677777777777777777766655444443 44556677777777777777
Q ss_pred hHHHHhhhhcCCCCCccHHHH---HHHHHHcCCcChhhHHHHHHHHHHcCCCCChh----hHHHHHHHhhccCchhhhHH
Q 047571 159 EDAEKVFDESSSESVYPWNAL---LRGAVIAGKKRYRGVLFNYMKMRELGVQLNVY----TFSCVIKSFAGASALMQGLK 231 (681)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~ 231 (681)
+.|.-.|.+..+.++.-|..+ ..-|-+.| +...|.+.|.++.+...+.|-. +--.+++.+...++.+.|.+
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G--~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTG--DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC--hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777777776654433333332 23455556 7777777777766653222211 22233445555565566666
Q ss_pred HHHHHHHh-CCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC-------------------------------------
Q 047571 232 THALLIKN-GFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD------------------------------------- 273 (681)
Q Consensus 232 ~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------------------------------- 273 (681)
.++..... +-..+...++.++..+.+...++.|.........
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 66655442 2233445556666666666666666555433221
Q ss_pred ------------------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 047571 274 ------------------------------RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGE 323 (681)
Q Consensus 274 ------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 323 (681)
.++..|.-+..++...|++.+|+.+|..+......-+...|-.+..++..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 01223334444444455555555555444443333333444444444444
Q ss_pred hhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh------------hhHHHHHHHHHhC
Q 047571 324 AWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNE------------ILWTALMSGYVSN 391 (681)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~li~~~~~~ 391 (681)
.|..+.|.+.+..++.. .+.+....-.|...+.+.|+.++|.+.+..+..+|. ...-.....+...
T Consensus 462 l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 45555555555544443 222222333444444455555555555544433320 0111122233334
Q ss_pred CChHHHHHHHHHHHHcC----------------------cCCCHHHHHHHHHHhhccCChhHHHHHHHH------HHHhC
Q 047571 392 GRLEQALRSIAWMQQEG----------------------FRPDVVTVATVIPVCSQLKALNHGKEIHAY------AVKNQ 443 (681)
Q Consensus 392 ~~~~~A~~~~~~m~~~g----------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~~ 443 (681)
|+.++=+.+...|.... ..-...+....+.+-.+.++.....+-... ....|
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 44333222222222110 000111111111111111111111110000 00011
Q ss_pred CCCCh--hHHHHHHHHHHhcCChHHHHHHHhhCCCC-----Ccc----hHHHHHHHHHhcCChhHHHHHHHHhHhC-CC-
Q 047571 444 FLPNV--SIITSLMIMYSKCGVLDYSLKLFDEMEVR-----NVI----SWTAMIDSCIENGRLDDALGVFRSMQLS-KH- 510 (681)
Q Consensus 444 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~- 510 (681)
+.-+. ..+.-++..+++.+++++|..+...+..- +.. .-...+.+.+..+++..|...++.|... +.
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 11111 12334555666667777777766665531 111 1233445556667777777777666653 11
Q ss_pred -CCCH-HHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhHHHH
Q 047571 511 -RPDS-VAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSITWTAI 586 (681)
Q Consensus 511 -~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l 586 (681)
.|.. ..|+..++...+.++-..-.+++..+......-++..+.........++.+..|...+-++.. ||.+..|.+
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~ 779 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLC 779 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1111 123323333333333222223332222222222233333333444556677777776655544 665555543
Q ss_pred HHH-HH----------cCCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC---------
Q 047571 587 IEA-YG----------YNDLCQEALSLFDKMRNGGFT-PNHFTFKVLLSICNQAGFADEACRIFNVMSRGY--------- 645 (681)
Q Consensus 587 ~~~-~~----------~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------- 645 (681)
+.. +. ++-.+-+++..+++-.+.... -....+..+.++|-..|-+.-|..++++.....
T Consensus 780 lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~ 859 (895)
T KOG2076|consen 780 LGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKE 859 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccC
Confidence 322 21 122345566677666654311 256788899999999999999999999886531
Q ss_pred -CCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 646 -KIEALEEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 646 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
........--.|.-+|..+|+.+.|++++++
T Consensus 860 d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 860 DNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred CcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 0111122333466679999999999999875
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=2.7e-14 Score=131.95 Aligned_cols=478 Identities=14% Similarity=0.061 Sum_probs=295.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHH-HHHHHHhhcCCChhHHHHhhhhc----CCCCCc----cHHHH
Q 047571 109 TFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLR-TKLVKMYTSCGSFEDAEKVFDES----SSESVY----PWNAL 179 (681)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~----~~~~l 179 (681)
....|.+-|.......+|+..|+-+.+..+.|+.-.. ..+.+.+.+.+.+.+|++.++-. +.-+.. ..+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3444555566677788899999988888877776543 34556677788888888877533 221111 13333
Q ss_pred HHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcC
Q 047571 180 LRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCG 259 (681)
Q Consensus 180 l~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 259 (681)
-..+.+.| .++.|+..|+...+. .|+..+-..|+-.+...|+.+...+.|+.|......+|..-|- +
T Consensus 283 gvtfiq~g--qy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~-- 349 (840)
T KOG2003|consen 283 GVTFIQAG--QYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------K-- 349 (840)
T ss_pred CeeEEecc--cchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------C--
Confidence 34456666 777777777766554 4666544444444445667777777777776644333322110 0
Q ss_pred ChHHHHHHHhccCCCChhhHH-----HHHHHHHhcC--ChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhhhhhhcccc
Q 047571 260 KIKLARRVFDETGDRDIVVWG-----SMIAGFAHNR--LRWEALDCARWMIREGIYPNSV-VLTILLPVIGEAWARKLGQ 331 (681)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~~~~-----~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~ 331 (681)
.-..|+....| -++.-+-+.. +.++++-.-.++..--+.||-. -+...+..+......+.|.
T Consensus 350 ----------~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~ 419 (840)
T KOG2003|consen 350 ----------EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI 419 (840)
T ss_pred ----------CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh
Confidence 00011111111 1111111111 1122222222222222333321 1222222222222222211
Q ss_pred hhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHH-----HHHh-CCChHHHHHHHHHHH
Q 047571 332 EVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMS-----GYVS-NGRLEQALRSIAWMQ 405 (681)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~-----~~~~-~~~~~~A~~~~~~m~ 405 (681)
++- -.-...+.+.|+++.|.++++-...+|..+-.+... -|.+ -.++.+|.+.-+...
T Consensus 420 dle----------------i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al 483 (840)
T KOG2003|consen 420 DLE----------------INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL 483 (840)
T ss_pred hhh----------------hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence 110 122345778999999999988887765443322222 2222 335666666655543
Q ss_pred HcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchH
Q 047571 406 QEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISW 482 (681)
Q Consensus 406 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~ 482 (681)
... +-+......--......|++++|.+.+++...+.-.-....||+ .-.+.+.|++++|++.|-++.. .+....
T Consensus 484 n~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl 561 (840)
T KOG2003|consen 484 NID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVL 561 (840)
T ss_pred ccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHH
Confidence 321 11111111111223456899999999999887654333444442 2346678999999999977653 566777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047571 483 TAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC 562 (681)
Q Consensus 483 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 562 (681)
-.+...|....+..+|++++.+.... ++.|...+..+...|-+.|+..+|.+++-+--+. ++.+..+...|...|...
T Consensus 562 ~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhh
Confidence 77888888899999999999877654 5667778889999999999999999887665443 466788888899999999
Q ss_pred CCHHHHHHHhhhCCC--CChhhHHHHHHHHH-cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 047571 563 GFLECAKLVFDAVPV--KGSITWTAIIEAYG-YNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGF 630 (681)
Q Consensus 563 g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 630 (681)
.-++++..+|++..- |+..-|..++..|. +.|++++|.++|+..... ++.|..+...|++.|...|.
T Consensus 640 qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 640 QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999999999987554 99999999888775 589999999999998875 67799999999999988885
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.72 E-value=4.5e-14 Score=141.25 Aligned_cols=253 Identities=13% Similarity=0.003 Sum_probs=150.7
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCC
Q 047571 93 VILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSES 172 (681)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 172 (681)
.+|-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.....+.+...++.++.+....++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34555666777777777777777777777777777 7777777666667777777777777777766554 566
Q ss_pred CccHHHHHHHHHHcCCcChhh---HHHHHHHH----HHcCCCCChhhHHH--------------HHHHhhccCchhhhHH
Q 047571 173 VYPWNALLRGAVIAGKKRYRG---VLFNYMKM----RELGVQLNVYTFSC--------------VIKSFAGASALMQGLK 231 (681)
Q Consensus 173 ~~~~~~ll~~~~~~~~~~~~~---a~~~~~~m----~~~g~~p~~~~~~~--------------ll~~~~~~~~~~~a~~ 231 (681)
..+|..|+.+|.++| |... +...++.. ...|+.--..-+-. ++......|-++.+.+
T Consensus 83 aDtyt~Ll~ayr~hG--Dli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHG--DLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hhHHHHHHHHHHhcc--chHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777 5433 11111111 11122111111111 1111122233333333
Q ss_pred HHHHHHHhCCCCCcHHHhHHHHHHHh-cCChHHHHHHHhccCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047571 232 THALLIKNGFVDYLILRTSLIDMYFK-CGKIKLARRVFDETGD-RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYP 309 (681)
Q Consensus 232 ~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 309 (681)
++..+-.....- ... .+++-... ...+++-..+.....+ ++..+|..++.+-...|+.+.|..++.+|++.|...
T Consensus 161 ll~~~Pvsa~~~-p~~--vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 161 LLAKVPVSAWNA-PFQ--VFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHhhCCcccccc-hHH--HHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 332221110000 000 01222222 2234444444444444 788888888888888999999999999999998888
Q ss_pred ChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCC
Q 047571 310 NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRD 362 (681)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 362 (681)
+..-|..|+-+ .++...+..+++.+... |+.|+..|+...+..+..+|.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 88877777655 66667777777777777 888888888877777776555
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=3.8e-11 Score=116.71 Aligned_cols=442 Identities=11% Similarity=0.045 Sum_probs=270.0
Q ss_pred HhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC--------CChhhHHHHHHHHHhcC
Q 047571 219 SFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD--------RDIVVWGSMIAGFAHNR 290 (681)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~ 290 (681)
++++..-++.|.++++...+. ++.+..+|.+-...--.+|+.+...+++++... -+...|-.=...|-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 445555566666666655543 455555665555555556666666666654321 12333444444455555
Q ss_pred ChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHH
Q 047571 291 LRWEALDCARWMIREGIYPN--SVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWR 368 (681)
Q Consensus 291 ~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 368 (681)
..--+..+.......|+.-. ..||......|.+.+.++-+..+|....+- ++.+..+|...+..--..|..+....
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 55555555555555554432 245666666666666666666666666654 55666666666655555666666666
Q ss_pred HHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCC
Q 047571 369 VFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFL 445 (681)
Q Consensus 369 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (681)
+|++.... ....|-.....+-..|+...|..++....+.... +...+...+.......+++.|..+|..... ..
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 66665542 4455666666666677777777777776665322 445555566666666777777777766554 34
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcc-hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHH
Q 047571 446 PNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVI-SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARML 521 (681)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll 521 (681)
|+..+|..-+....-.++.++|.+++++..+ |+.. .|-.+...+-+.++.+.|.+.|..-.+. -|+.. .|..+.
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLa 726 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLA 726 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHH
Confidence 6666666666666666777777777766655 3332 4555556666666666666666544332 34333 333333
Q ss_pred HHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHH
Q 047571 522 SVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQE 598 (681)
Q Consensus 522 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~ 598 (681)
..=.+.|.+-.|+.+++...-.+ +-+...|-..|++-.+.|+.+.|..++.+..+ |+ ...|..-|....+.++-.+
T Consensus 727 kleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 44445566777777777666554 33566677777777777777777777666655 33 4456666666666555444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 599 ALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 599 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
....+++ +.-|++....+...|....+++.|.+.|++..+. .|| ..+|.-+..-+.+.|.-++-.+++.+.
T Consensus 806 s~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~---d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 806 SIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK---DPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4444333 4567777777788888888899999999877653 444 567888888888889877777777654
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=2.7e-13 Score=125.49 Aligned_cols=455 Identities=12% Similarity=0.087 Sum_probs=285.2
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHH-HHHHHhhccCchhhhHHHHHHHHHhCCCCCc----HHHhHHHHHHHhcCChHHH
Q 047571 190 RYRGVLFNYMKMRELGVQLNVYTFS-CVIKSFAGASALMQGLKTHALLIKNGFVDYL----ILRTSLIDMYFKCGKIKLA 264 (681)
Q Consensus 190 ~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~~~~~~a 264 (681)
...+|+..|+-..+...-|+..... .+-+.+.+.+++..|.++++.....-...+. .+.+.+--.+.+.|+++.|
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 4566666666666665556554332 2334556677777777777666554222222 2333333456677788888
Q ss_pred HHHHhccCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccC
Q 047571 265 RRVFDETGD--RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNER 342 (681)
Q Consensus 265 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 342 (681)
+..|+.+.+ ||..+--.|+-++..-|+.++..+.|.+|...-..||..-|.. . .
T Consensus 296 insfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~-----------------------~-~ 351 (840)
T KOG2003|consen 296 INSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK-----------------------E-K 351 (840)
T ss_pred HhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC-----------------------C-c
Confidence 887776554 4544333333344456777777777777776544444333210 0 1
Q ss_pred CCCCchHHhH-----HHHHHHhcCC--HHHH----HHHHhhcCCCChh-------------hH--------HHHHHHHHh
Q 047571 343 YSEELFVRSS-----LVDMYCKCRD--MNSA----WRVFYETEERNEI-------------LW--------TALMSGYVS 390 (681)
Q Consensus 343 ~~~~~~~~~~-----l~~~~~~~~~--~~~a----~~~~~~~~~~~~~-------------~~--------~~li~~~~~ 390 (681)
-.|+....+. .+.-.-+.+. .+++ .+++.-...++-. .+ -.-...+.+
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 1111111111 1111111111 1111 1111112222100 01 111235789
Q ss_pred CCChHHHHHHHHHHHHcCcCCCHHHHH--HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 047571 391 NGRLEQALRSIAWMQQEGFRPDVVTVA--TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL 468 (681)
Q Consensus 391 ~~~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (681)
+|+++.|+++++.+....-+.-...-+ .++..+.-..++..|.++-+...... +-+......-.+.-...|++++|.
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHH
Confidence 999999999999887664332222222 22332333446667766665554322 112222222222334578999999
Q ss_pred HHHhhCCCCCcchHHHHHH---HHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571 469 KLFDEMEVRNVISWTAMID---SCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDF 545 (681)
Q Consensus 469 ~~~~~~~~~~~~~~~~li~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 545 (681)
+.+++....|..+-.+|.. .+...|++++|++.|-++..- +..+...+..+.+.|....+..+|++++.+.... +
T Consensus 511 ~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 9999999888776655544 367889999999999887643 3445667778888888889999999998876553 4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047571 546 ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLL 622 (681)
Q Consensus 546 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 622 (681)
+.++.+...|...|-+.|+-..|.+..-+--+ .+..+..-|..-|....-+++++..|++..- +.|+..-|..++
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 56799999999999999999999988655444 4566666677778888899999999999876 799999999988
Q ss_pred HHH-hccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 623 SIC-NQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 623 ~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
..| .+.|++.+|.+++...-+ +++-+......|++.+...| ..+|.++-++
T Consensus 667 asc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg-l~d~key~~k 718 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG-LKDAKEYADK 718 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc-chhHHHHHHH
Confidence 765 567999999999999877 56777889999999988877 3445554443
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=8.8e-11 Score=118.86 Aligned_cols=567 Identities=13% Similarity=0.067 Sum_probs=376.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhc---CCCCCccHHHHHH
Q 047571 105 VNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDES---SSESVYPWNALLR 181 (681)
Q Consensus 105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~ll~ 181 (681)
|.....-...+.+...|+.++|..++.+.++.. +.+...|..|...|-..|+.+++...+-.. .+.|..-|-.+-.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 333444444445555699999999999999987 778889999999999999999999877543 3445556888888
Q ss_pred HHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHh----HHHHHHHh
Q 047571 182 GAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRT----SLIDMYFK 257 (681)
Q Consensus 182 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~ 257 (681)
-..+.| ++.+|.-+|.+..+.. +++-..+--=...|-+.|+...|...|.++.....+.|..-.- ..++.+..
T Consensus 216 ls~~~~--~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 216 LSEQLG--NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHhcc--cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 888888 9999999999988764 2333334445667889999999999999998876544433333 34566777
Q ss_pred cCChHHHHHHHhccCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHH---------------------------c
Q 047571 258 CGKIKLARRVFDETGD-----RDIVVWGSMIAGFAHNRLRWEALDCARWMIR---------------------------E 305 (681)
Q Consensus 258 ~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------------------------~ 305 (681)
.++-+.|.+.++.... -+...++.++..+.+...++.+......+.. .
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 7888999998887655 2456789999999999999999988887765 1
Q ss_pred CCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccC--CCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC----Chh
Q 047571 306 GIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNER--YSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER----NEI 379 (681)
Q Consensus 306 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 379 (681)
++.++... ..++-++...+..+....+....... . ...+...|..+.++|...|++.+|.++|..+... +..
T Consensus 373 ~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 373 ELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 12222222 23344455555556666666655555 3 4455667888889999999999999999888753 567
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCH-HHHHHHHHHhhccCChhHHHHHHHHH--------HHhCCCCChhH
Q 047571 380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDV-VTVATVIPVCSQLKALNHGKEIHAYA--------VKNQFLPNVSI 450 (681)
Q Consensus 380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~ 450 (681)
.|-.+.++|...|..+.|.+.|+..... .|+. ..--.|-..+.+.|+.++|.+.+..+ ...+..|....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 8888888999999999999998888775 3443 33334555567788888888888873 33456677776
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC----------------------------------------CC------------C
Q 047571 451 ITSLMIMYSKCGVLDYSLKLFDEME----------------------------------------VR------------N 478 (681)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~----------------------------------------~~------------~ 478 (681)
.-.....+.+.|+.++-..+..+|. .+ +
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d 608 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSD 608 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccc
Confidence 6666677777777665333221110 00 0
Q ss_pred c-----------------chHHHHHHHHHhcCChhHHHHHHHHhHhCCC--CCCH---HHHHHHHHHhccccchHHHHHH
Q 047571 479 V-----------------ISWTAMIDSCIENGRLDDALGVFRSMQLSKH--RPDS---VAMARMLSVSGQLKALKLGKEI 536 (681)
Q Consensus 479 ~-----------------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~~~~~~a~~~ 536 (681)
. ..+.-++.++++.+++++|+.+...+..... .++. ..-...+.++...+++..|...
T Consensus 609 ~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 609 GTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSY 688 (895)
T ss_pred hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 0 0133456778888899999988888776542 2222 1223455667788889999888
Q ss_pred HHHHHHc-CCCC---ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC--hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 537 HGQVLKK-DFAS---VPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG--SITWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 537 ~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
++.++.. +... -...|+.......+.|+-..-.+++..... ++ ...+-.........+.+.-|+..+-+...
T Consensus 689 lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 689 LRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 8887754 2211 244555555556666655555555444333 22 22222222334456788888888877776
Q ss_pred CCCCCC-HHHHHHHHHHHhcc-------C---CHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 609 GGFTPN-HFTFKVLLSICNQA-------G---FADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 609 ~g~~p~-~~~~~~l~~~~~~~-------g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
. .|+ +.+--.+..++... . ..-++..++.+..+.....--.+.+..++++|-..|-..-|..++++.
T Consensus 769 ~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 769 Q--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKV 846 (895)
T ss_pred h--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 454 33222222222211 1 123455555555443222223567888999999999999999999987
Q ss_pred cCCC
Q 047571 678 SSLS 681 (681)
Q Consensus 678 ~~~~ 681 (681)
...|
T Consensus 847 L~~~ 850 (895)
T KOG2076|consen 847 LEVS 850 (895)
T ss_pred hCCC
Confidence 6543
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=1.2e-10 Score=113.32 Aligned_cols=441 Identities=12% Similarity=0.012 Sum_probs=332.1
Q ss_pred hccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHH
Q 047571 221 AGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALD 297 (681)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 297 (681)
....+.+.|.-++....+. ++.+.. |.-+|.+..-++.|.++++...+ .+...|-+-...=-.+|+.+...+
T Consensus 387 VelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 3344455566666666554 233333 34456666777888888876655 366777766666667888888887
Q ss_pred HHHHH----HHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCC--CchHHhHHHHHHHhcCCHHHHHHHHh
Q 047571 298 CARWM----IREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSE--ELFVRSSLVDMYCKCRDMNSAWRVFY 371 (681)
Q Consensus 298 ~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 371 (681)
++++- ...|+..+..-|..=...|...|..-....+...++.- |... -..+|..-.+.|.+.+.++-|..+|.
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 77653 45688888888877777777777777777777666655 3332 24577888888889999999999888
Q ss_pred hcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCh
Q 047571 372 ETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNV 448 (681)
Q Consensus 372 ~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 448 (681)
...+- +...|......--..|..+....+|++.... ++-....+.......-..|++..|..++..+.+.. +.+.
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnse 618 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSE 618 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcH
Confidence 77653 5567777777667788889999999998886 33334444445556777899999999999988876 4477
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhc
Q 047571 449 SIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSG 525 (681)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~ 525 (681)
..+-+-+........+++|..+|.+... +....|.--+..-.-.++.++|++++++..+. -|+.. .|..+...+-
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 8888888899999999999999998875 66666766666666778999999999888874 56554 5666667778
Q ss_pred cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHH
Q 047571 526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSL 602 (681)
Q Consensus 526 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 602 (681)
+.++++.|...|..-.+. .+..+..|-.+.+.-.+.|.+.+|..++++... .|...|-..|+.-.+.|+.+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888765543 344577888899999999999999999997766 3477899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 603 FDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 603 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
..+..+. ++-+...|.-.|....+.++-......+. +..-|+.....+...+....+++.|+++|++-..
T Consensus 776 makALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 776 MAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888775 67788889888888888888666666665 3455667888999999999999999999998654
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.65 E-value=3.2e-13 Score=135.30 Aligned_cols=252 Identities=8% Similarity=-0.032 Sum_probs=181.8
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCCh
Q 047571 197 NYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDI 276 (681)
Q Consensus 197 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 276 (681)
.+-.+...|+.|+.+||..+|..||..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 4456778899999999999999999999999999 9999999888888999999999998888887765 6788
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCChhhHH--------------HHHHHHhhhhhhcccchhhh
Q 047571 277 VVWGSMIAGFAHNRLRWEALDCARWMIR-------EGIYPNSVVLT--------------ILLPVIGEAWARKLGQEVHA 335 (681)
Q Consensus 277 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~--------------~ll~~~~~~~~~~~a~~~~~ 335 (681)
.+|..|..+|...|+...-..+=+.|.. .|+..-..-+- .++......|.++.+.+++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999987652222222321 22211111111 12222333344555555554
Q ss_pred hhhhccCCCCCchHHhHHHHHHHh-cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCH
Q 047571 336 YVLKNERYSEELFVRSSLVDMYCK-CRDMNSAWRVFYETEE-RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDV 413 (681)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 413 (681)
.+.......|..+ +++-+.. ...+++-....+...+ +++.+|.+++++-..+|+.+.|..++.+|++.|++.+.
T Consensus 164 ~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred hCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 3332211222211 1222222 2334444444444444 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 047571 414 VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV 463 (681)
Q Consensus 414 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (681)
+-|..++-+ .++...+..++.-|...|+.|+..|+...+..+.+.|.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999888876 78888999999999999999999999988877776544
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=2.3e-12 Score=128.74 Aligned_cols=278 Identities=11% Similarity=0.004 Sum_probs=200.2
Q ss_pred CCChHHHHHHHHHHHHcCcCCCHHH-HHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHH--HHHHHHHhcCChHHH
Q 047571 391 NGRLEQALRSIAWMQQEGFRPDVVT-VATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIIT--SLMIMYSKCGVLDYS 467 (681)
Q Consensus 391 ~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a 467 (681)
.|+++.|.+.+....+.. +++.. |.....+..+.|+.+.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 588888887766654432 12222 323334447788888888888888764 34443332 335677888899999
Q ss_pred HHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-------HHHHHHHHhccccchHHHHHHH
Q 047571 468 LKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-------AMARMLSVSGQLKALKLGKEIH 537 (681)
Q Consensus 468 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~ 537 (681)
...++++.+ | +......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...+++
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888775 3 45567788888899999999999999998877553332 2333333333444455556666
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHH
Q 047571 538 GQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFT 617 (681)
Q Consensus 538 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 617 (681)
+.+-+. .+.++.....+...+...|+.++|...+++........--.++.+....++.+++++..++..+.. +-|+..
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l 330 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLL 330 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHH
Confidence 655432 345788888999999999999999999987766222222223445556799999999999999863 447778
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 618 FKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
+..+...|.+.|++++|.+.|+...+ ..|+...+..+..++.+.|+.++|.+++++-
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999999999999998875 4788888899999999999999999988764
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=3.6e-12 Score=128.10 Aligned_cols=284 Identities=11% Similarity=-0.036 Sum_probs=205.2
Q ss_pred HhCCChHHHHHHHHHHHHcCcCCCHHH-HHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 047571 389 VSNGRLEQALRSIAWMQQEGFRPDVVT-VATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYS 467 (681)
Q Consensus 389 ~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 467 (681)
...|+++.|.+.+.+..+. .|+... +-....+....|+.+.|.+++..+.+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4578999999988877664 354333 3344556778899999999999887654222223444457788889999999
Q ss_pred HHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHh---ccccchHHHHHHHHHHH
Q 047571 468 LKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVS---GQLKALKLGKEIHGQVL 541 (681)
Q Consensus 468 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~ 541 (681)
...++.+.+ | +...+..+...+...|++++|.+.+..+.+.++.+.......-..++ ...+..+.+.+.+..+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999998876 4 55678888899999999999999999999987543333212111221 22233333334444444
Q ss_pred HcCC---CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhh---HHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 047571 542 KKDF---ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSIT---WTAIIEAYGYNDLCQEALSLFDKMRNGGFTP 613 (681)
Q Consensus 542 ~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 613 (681)
+... +.++..+..++..+...|+.++|..++++... |+... ...........++.+.+++.+++..+.. +-
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~ 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DD 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CC
Confidence 4322 24788999999999999999999999998877 55332 1222223344678899999999988752 33
Q ss_pred CH--HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 614 NH--FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 614 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
|+ ....++.+.|.+.|++++|.++|+.... ....|+...+..+..++.+.|+.++|.+++++
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56 6778999999999999999999995433 25578888899999999999999999999886
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=4.8e-09 Score=98.51 Aligned_cols=262 Identities=12% Similarity=0.129 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCh-------hHHHHHHHHH---HhcCChHHHHHHHhhCCC--C-C
Q 047571 412 DVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNV-------SIITSLMIMY---SKCGVLDYSLKLFDEMEV--R-N 478 (681)
Q Consensus 412 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~---~~~g~~~~a~~~~~~~~~--~-~ 478 (681)
|-.++--.+......|+.+...++++.++.+- +|-. .+|--+=-++ ....+++.+.++++...+ | .
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk 399 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK 399 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc
Confidence 44444444444445555555555555555432 2211 1111111111 234566666666665554 2 2
Q ss_pred cchHHHH----HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHH
Q 047571 479 VISWTAM----IDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAE 554 (681)
Q Consensus 479 ~~~~~~l----i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 554 (681)
..||.-+ ..--.++.++..|.+++...+ |.-|...+|...|..=.+.+.++.+..+++..++.+ +-+..+|..
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~k 476 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSK 476 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHH
Confidence 2333332 222345677777777777665 457777777777777777788888888888877764 234556666
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC-CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh---
Q 047571 555 NIKMYGMCGFLECAKLVFDAVPV-KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN--- 626 (681)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~--- 626 (681)
....-...|+.+.|..+|+-+.+ |. ...|.+.|.--...|.+++|..+|+++++. .+....|-++..--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~ 554 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhcccc
Confidence 77777777888888888876655 33 345666666667788888888888888874 344445544443222
Q ss_pred --ccC-----------CHHHHHHHHHHhhhcCCCCCChhHHHHH----HHHHhhcCCHHHHHHHHHhccC
Q 047571 627 --QAG-----------FADEACRIFNVMSRGYKIEALEEHYLIM----IDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 627 --~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
+.| ....|..+|++....+...-+..--..| .+.=...|...+...+-.+||.
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 333 4567888888764432222222223333 3333455766666666666663
No 40
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=2.1e-08 Score=97.94 Aligned_cols=555 Identities=10% Similarity=0.033 Sum_probs=295.6
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 047571 71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQ-GIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLV 149 (681)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 149 (681)
=|+.|..-++.+..+|+.......|++.+.. .+......|...+......+-++-+..+++...+. ++..-+-.|
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 3455666677777788888888888877554 33334556777777777777787888888887744 334456677
Q ss_pred HHhhcCCChhHHHHhhhhcCCCCC----------ccHHHHHHHHHHcCCcChhh---HHHHHHHHHHcCCCCChh--hHH
Q 047571 150 KMYTSCGSFEDAEKVFDESSSESV----------YPWNALLRGAVIAGKKRYRG---VLFNYMKMRELGVQLNVY--TFS 214 (681)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~ll~~~~~~~~~~~~~---a~~~~~~m~~~g~~p~~~--~~~ 214 (681)
..++..+++++|.+.+..+...+. ..|.-+-.-.+++. +.-. ...+++.+. +.-+|.. .|+
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p--~~~~slnvdaiiR~gi--~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP--DKVQSLNVDAIIRGGI--RRFTDQLGFLWC 252 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc--chhcccCHHHHHHhhc--ccCcHHHHHHHH
Confidence 888888999998888877653221 22544444444433 2111 112222211 1223333 456
Q ss_pred HHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHH-h--cc-CCCChhhHHHHHHHHHhcC
Q 047571 215 CVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVF-D--ET-GDRDIVVWGSMIAGFAHNR 290 (681)
Q Consensus 215 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~-~--~~-~~~~~~~~~~li~~~~~~~ 290 (681)
.|.+.|.+.|.++.|..++++....- .++.-++.+.+.|+....-.-+.++= . +. .+.+..
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~------------- 317 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV------------- 317 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh-------------
Confidence 66666666666666666666554432 22333344444444322111111100 0 00 000111
Q ss_pred ChHHHHHHHHHHHHcCC-----------CCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCC------chHHhHH
Q 047571 291 LRWEALDCARWMIREGI-----------YPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEE------LFVRSSL 353 (681)
Q Consensus 291 ~~~~a~~~~~~m~~~g~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l 353 (681)
+++-.+.-|+.+...+. .-+..+|..-.. ...|+..+....+..+++. +.|. ...|..+
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHH
Confidence 11112222222222110 011122221111 1122333333344444433 1111 2355667
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhcc
Q 047571 354 VDMYCKCRDMNSAWRVFYETEERNE-------ILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQL 426 (681)
Q Consensus 354 ~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 426 (681)
...|-..|+++.|..+|+...+-+- .+|......=.+..+++.|+++++.... .|.... + .+...
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~ 465 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDN 465 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcC
Confidence 7777777777777777777665322 2344444444455556666655444433 233211 1 11111
Q ss_pred CChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHH---HHHHhcCChhHHHHHHH
Q 047571 427 KALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMI---DSCIENGRLDDALGVFR 503 (681)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~ 503 (681)
+..-++ . +--+..+|..+++.-...|-++....+++.+.+-.+.|=..++ .-+-.+.-++++.++|+
T Consensus 466 ~~pvQ~-r---------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 466 SEPVQA-R---------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred CCcHHH-H---------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 111110 0 1123345555566666677788888888877763332222222 12334555778888887
Q ss_pred HhHhCCCCCCHH-HHHHHHHHhcc---ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH----hcCCHHHHHHHhhhC
Q 047571 504 SMQLSKHRPDSV-AMARMLSVSGQ---LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYG----MCGFLECAKLVFDAV 575 (681)
Q Consensus 504 ~m~~~g~~p~~~-~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~ 575 (681)
+-+..--.|+.. .|+..+..+.+ ....+.|+.+|++.++ +.+| .....+.-+|+ +.|....|+.+++++
T Consensus 536 rgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp--~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 536 RGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP--EHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 766554445543 44444444332 2367888888888887 4333 33333333343 347778888888876
Q ss_pred CC---C--ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHhhhcCCC
Q 047571 576 PV---K--GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFK---VLLSICNQAGFADEACRIFNVMSRGYKI 647 (681)
Q Consensus 576 ~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 647 (681)
.. + -...||..|.--...=-+.....+|++..+. -|+...-. -..+.=.+.|..++|..++-...+-...
T Consensus 613 t~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 613 TSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 65 1 1457888876555443445567788888884 56554433 3334457789999999999887775455
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 047571 648 EALEEHYLIMIDILTRFGRIEEAHRFRE 675 (681)
Q Consensus 648 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 675 (681)
..+...|.+.=.-=.+.|+-+.-++++.
T Consensus 691 r~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 691 RVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5567888888777789999666665553
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=6.7e-10 Score=103.95 Aligned_cols=287 Identities=12% Similarity=0.106 Sum_probs=165.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhcCC
Q 047571 386 SGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFL--PNVSIITSLMIMYSKCGV 463 (681)
Q Consensus 386 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 463 (681)
.++....+.+++..-.+.....|+.-+...-+....+.-...++++|..+|+++.++..- .|..+|+.++-.-....+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444566666666666666665544444444444455566777777777777765321 244555554433222222
Q ss_pred hHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc
Q 047571 464 LDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK 543 (681)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 543 (681)
+.---...-.+.+-.+.|..++.+-|.-.++.++|...|++..+.+ +-....+..+..-|....+...|.+.++..++-
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 2211122222333344555566666666667777777777766643 222234444555566666777777777766654
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047571 544 DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKV 620 (681)
Q Consensus 544 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 620 (681)
+ +-|-..|-.|.++|.-.+...-|.-.|++... .|...|.+|...|.+.++.++|++.|.+....| ..+...+..
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR 471 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 3 33455666677777777777777777776655 456677777777777777777777777777655 445666777
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhcC---C-CCC-ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 047571 621 LLSICNQAGFADEACRIFNVMSRGY---K-IEA-LEEHYLIMIDILTRFGRIEEAHRFRE 675 (681)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 675 (681)
|...+.+.++.++|...++...+.. | ..| ....-.-|..-+.+.+++++|-.+..
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 7777777777777777776655421 1 222 12222223444556666666655443
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1.2e-13 Score=131.99 Aligned_cols=254 Identities=15% Similarity=0.050 Sum_probs=75.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHH-HHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 047571 385 MSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATV-IPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV 463 (681)
Q Consensus 385 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (681)
...+.+.|++++|+++++.......+|+...|..+ ...+...++.+.|...++.+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 33444555555555555433332212333333322 22333445555555555555544321 33344444444 45555
Q ss_pred hHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 047571 464 LDYSLKLFDEMEV--RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVL 541 (681)
Q Consensus 464 ~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 541 (681)
+++|.++++...+ ++...+..++..+.+.++++++.++++++....
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-------------------------------- 140 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP-------------------------------- 140 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T--------------------------------
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc--------------------------------
Confidence 5555555544322 333444444555555555555555555544321
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHH
Q 047571 542 KKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTF 618 (681)
Q Consensus 542 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 618 (681)
..+.++..+..+...+.+.|+.++|.+.++++.. |+ ....+.++..+...|+.+++.++++...+.. +.|+..+
T Consensus 141 --~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~ 217 (280)
T PF13429_consen 141 --AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLW 217 (280)
T ss_dssp -----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHC
T ss_pred --CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHH
Confidence 1123344444444555555555555555554444 33 4456666666777777777666666666542 4455566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 619 KVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
..+..++...|+.++|+.++++..+. .+.|+.....+.+++...|+.++|.++..+.
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence 66777777777777777777766553 2224566667777777777777777766554
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=6.4e-14 Score=133.74 Aligned_cols=218 Identities=16% Similarity=0.198 Sum_probs=97.3
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CC---C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccc
Q 047571 453 SLMIMYSKCGVLDYSLKLFDEM-EV---R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQL 527 (681)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~-~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 527 (681)
.+...+.+.|++++|.+++++. .. | |...|..+.......++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4466667777777777777432 22 2 3344555555666677888888888888765422 44455555555 577
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CChhhHHHHHHHHHcCCChHHHHHH
Q 047571 528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KGSITWTAIIEAYGYNDLCQEALSL 602 (681)
Q Consensus 528 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~ 602 (681)
+++++|..++....+.. +++..+..++..+...|+++++..+++.+.. .+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888887777665543 4566777788889999999999999887543 4567788889999999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 603 FDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 603 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
+++..+. .| |......+++.+...|+.+++.++++...+.. +.++..+..+..+|...|+.++|..++++..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccc
Confidence 9999995 55 68889999999999999999999999888752 4456788999999999999999999998753
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=7.4e-11 Score=117.95 Aligned_cols=289 Identities=11% Similarity=0.008 Sum_probs=194.9
Q ss_pred HHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHh--HHHHHHHhcC
Q 047571 182 GAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRT--SLIDMYFKCG 259 (681)
Q Consensus 182 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~~ 259 (681)
|......+++++|.+.+....+.+-.| ...|.....+..+.|+.+.|.+.+..+.+. .|+..... .....+...|
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g 167 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARN 167 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCC
Confidence 333333337777776666544432111 222333344557888888888888888764 34443222 3356778888
Q ss_pred ChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhh
Q 047571 260 KIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAY 336 (681)
Q Consensus 260 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 336 (681)
+++.|...++++.+ .+...+..+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------- 229 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------- 229 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------
Confidence 89988888887765 25677888888888899999999999888887654322 1111100
Q ss_pred hhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCH
Q 047571 337 VLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDV 413 (681)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 413 (681)
..|..++.......+.+...++++.+.. .++.....+...+...|+.++|.+++++..+. .||.
T Consensus 230 -----------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~ 296 (398)
T PRK10747 230 -----------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE 296 (398)
T ss_pred -----------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH
Confidence 0111222323333445556666666543 36677788888889999999999999888774 4444
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHh
Q 047571 414 VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIE 491 (681)
Q Consensus 414 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~ 491 (681)
.. .++.+....++.+++.+..+...+.. +-|......+...+.+.+++++|.+.|+...+ |+...|..+...+.+
T Consensus 297 ~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 297 RL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDR 373 (398)
T ss_pred HH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 22 23344445688888888888887654 55666778888899999999999999988875 777788888899999
Q ss_pred cCChhHHHHHHHHhHh
Q 047571 492 NGRLDDALGVFRSMQL 507 (681)
Q Consensus 492 ~~~~~~A~~~~~~m~~ 507 (681)
.|+.++|.++|++-..
T Consensus 374 ~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 374 LHKPEEAAAMRRDGLM 389 (398)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999987754
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=4.8e-09 Score=98.55 Aligned_cols=411 Identities=13% Similarity=0.066 Sum_probs=262.5
Q ss_pred cCChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhh
Q 047571 258 CGKIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVH 334 (681)
Q Consensus 258 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 334 (681)
.+++..|..+|++... +++..|--.+..=.++..+..|..++++.+..=...|.. |-.-+..-...|+...|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHH
Confidence 3444555555555443 344555555555556666666666666555432222211 112222223345556666666
Q ss_pred hhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC
Q 047571 335 AYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETE--ERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD 412 (681)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 412 (681)
+.-+ ...|+...|.+.|+.=.+-+.++.|..+++... .|++..|-...+-=.+.|+...|..+|....+. --|
T Consensus 165 erW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 165 ERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 5544 346777777777777777777777877777643 467777777777777788888888887776653 112
Q ss_pred HHHHHHHHHH----hhccCChhHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHH--------hhCCCC-
Q 047571 413 VVTVATVIPV----CSQLKALNHGKEIHAYAVKNQFLPN--VSIITSLMIMYSKCGVLDYSLKLF--------DEMEVR- 477 (681)
Q Consensus 413 ~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~--------~~~~~~- 477 (681)
...-..+..+ -.+++.++.|.-+|+-..+.- +.+ ...|..+..---+-|+....++.. +.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 2222233333 344567788888888777652 222 334444444434455544433332 222222
Q ss_pred --CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-------HHHHHHHHh---ccccchHHHHHHHHHHHHcCC
Q 047571 478 --NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-------AMARMLSVS---GQLKALKLGKEIHGQVLKKDF 545 (681)
Q Consensus 478 --~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~ 545 (681)
|..+|-..+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+.+.+.+++...++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 4556777777777789999999999998875 455322 121121122 2457888899999888872 3
Q ss_pred CCChhHHHHHHHHH----HhcCCHHHHHHHhhhCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047571 546 ASVPFVAAENIKMY----GMCGFLECAKLVFDAVPV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFK 619 (681)
Q Consensus 546 ~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 619 (681)
+....++..+--+| .++.++..|.+++..... |...++...|..-.+.+++|....+|++..+-+ |-|..+|.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ 475 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWS 475 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHH
Confidence 33455555544444 466889999999987766 777788888888888999999999999999853 34778888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 620 VLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
.....=...|+.++|..+|+.......+.--.-.|.+.|+-=...|.++.|+.+++++.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 88888888899999999999887753333334567777777788899999999988865
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.2e-09 Score=102.24 Aligned_cols=192 Identities=14% Similarity=0.041 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc
Q 047571 450 IITSLMIMYSKCGVLDYSLKLFDEMEVRN---VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ 526 (681)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 526 (681)
|+.++.+.|+-.++.++|...|+...+-| ...|+.+.+-|...++...|++-|+..++-. +.|...|-.+..+|..
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEI 410 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHH
Confidence 34444455555555555555555554422 2344555555555555555555555555432 3344455555555555
Q ss_pred ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-CC--hhhHHHHHHHHHcCCChHHHHHHH
Q 047571 527 LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-KG--SITWTAIIEAYGYNDLCQEALSLF 603 (681)
Q Consensus 527 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~ 603 (681)
.+...=|.-+|++..+.. +.|+.+|.+|.++|.+.++.++|...|..... .| ...+..|...|-+.++.++|...|
T Consensus 411 m~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred hcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 555555555555555432 33566666666666666666666666665555 22 356667777777777777777776
Q ss_pred HHHHh----CCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 604 DKMRN----GGF-TP-NHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 604 ~~m~~----~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
++-++ .|. .| .......|..-+.+.+++++|..+......
T Consensus 490 ek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 490 EKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 66544 221 22 122233355556677777777766654443
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=1.9e-10 Score=105.97 Aligned_cols=280 Identities=12% Similarity=0.062 Sum_probs=215.5
Q ss_pred hCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047571 390 SNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLK 469 (681)
Q Consensus 390 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (681)
..|++.+|.+.+.+-.+.+-.| ...|..-..+....|+.+.+..++.++.+.--.++...+-.........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3688888888888877765443 334555566777888888888888888876446677777778888888888888888
Q ss_pred HHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-------HHHHHHHHhccccchHHHHHHHHH
Q 047571 470 LFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-------AMARMLSVSGQLKALKLGKEIHGQ 539 (681)
Q Consensus 470 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~ 539 (681)
-++++.+ .++........+|.+.|++.+...++..|.+.|+-.+.. ++..+++-+...+..+.-...|+.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7776654 466778888899999999999999999999988766644 577777777777766666666665
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC--ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHH
Q 047571 540 VLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVK--GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFT 617 (681)
Q Consensus 540 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 617 (681)
.-+. .+.++.+...++.-+..+|+.++|.++.++..+. |.. -.....+.+-++.+.-++..++-.+. .+.++..
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L 330 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLL 330 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhH
Confidence 5443 4567888889999999999999999998877662 222 22233455677888888887776664 2446688
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 618 FKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
+.+|...|.+.+.|.+|.+.|+... ...|+..+|+.+.++|.+.|+.++|.++.++-
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8999999999999999999999544 66889999999999999999999999887753
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=4.5e-11 Score=117.13 Aligned_cols=269 Identities=14% Similarity=0.069 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHH
Q 047571 394 LEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQF--LPNVSIITSLMIMYSKCGVLDYSLKLF 471 (681)
Q Consensus 394 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~ 471 (681)
+.+|+..|..+... +.-+......+-.+|...+++++|.++|+.+.+... .-+..+|...+.-+-+.-...---+-+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45555555553332 222224444455556666666666666666554321 123444554443332211111111111
Q ss_pred hhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChh
Q 047571 472 DEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRP-DSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPF 550 (681)
Q Consensus 472 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 550 (681)
-.+....+.+|.++..+|.-+++.+.|++.|++..+. .| ...+|..+..-+.....+|.|...|+..+. .++.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~r 487 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPR 487 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCch
Confidence 1111234456666666666666666666666666553 33 334444444444555556666666655443 3344
Q ss_pred HHHH---HHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047571 551 VAAE---NIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI 624 (681)
Q Consensus 551 ~~~~---l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 624 (681)
.|++ +...|.+.++++.|+-.|+++.+ .+.+....+...+.+.|+.|+|++++++..... +-|+.+-..-+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHH
Confidence 4443 34556666666666666666665 234455555566666666777777777666642 3355555555666
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 047571 625 CNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHR 672 (681)
Q Consensus 625 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 672 (681)
+...+++++|++.++++++- ++-+...+..+++.|.+.|+.+.|+.
T Consensus 567 l~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHH
Confidence 66666677777777666542 22235566666666766666666654
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=7.7e-10 Score=111.35 Aligned_cols=295 Identities=10% Similarity=-0.024 Sum_probs=198.3
Q ss_pred HHHHHHHcCCcChhhHHHHHHHHHHcCCCCChh-hHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHh
Q 047571 179 LLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVY-TFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFK 257 (681)
Q Consensus 179 ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 257 (681)
+..|......++++.|.+.+.+..+. .|+.. .+-....+....|+.+.|.+.+....+....+...+.......+..
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 34455554445888888888775554 34433 3344456677889999999999887765422222344445777888
Q ss_pred cCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhh
Q 047571 258 CGKIKLARRVFDETGD--R-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVH 334 (681)
Q Consensus 258 ~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 334 (681)
.|+++.|...++.+.+ | +...+..+...+...|++++|.+++..+.+.++.++......-..+.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~------------- 232 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE------------- 232 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-------------
Confidence 9999999988888765 2 66678888889999999999999999998876543222111111111
Q ss_pred hhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCC
Q 047571 335 AYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRP 411 (681)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 411 (681)
..++..-......+.....++...+ .+...+..+...+...|+.++|.+++++..+.. |
T Consensus 233 ----------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--p 294 (409)
T TIGR00540 233 ----------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--G 294 (409)
T ss_pred ----------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--C
Confidence 1111111222234444555555543 367778888888999999999999999888763 4
Q ss_pred CHHH--H-HHHHHHhhccCChhHHHHHHHHHHHhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHh--hCC--CCCcchH
Q 047571 412 DVVT--V-ATVIPVCSQLKALNHGKEIHAYAVKNQFLPNV--SIITSLMIMYSKCGVLDYSLKLFD--EME--VRNVISW 482 (681)
Q Consensus 412 ~~~~--~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~--~~~~~~~ 482 (681)
|... + ..........++.+.+.+.++...+.. +-+. ....++...+.+.|++++|.+.|+ ... .|+...+
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 4432 1 111122234577788888887777653 3344 566688899999999999999999 342 4888888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHh
Q 047571 483 TAMIDSCIENGRLDDALGVFRSMQL 507 (681)
Q Consensus 483 ~~li~~~~~~~~~~~A~~~~~~m~~ 507 (681)
..+...+.+.|+.++|.++|++...
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999999999988643
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=4.1e-09 Score=97.32 Aligned_cols=299 Identities=11% Similarity=0.032 Sum_probs=213.3
Q ss_pred HHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhc
Q 047571 179 LLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKC 258 (681)
Q Consensus 179 ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 258 (681)
+..+..+...|++.+|.+...+-.+.+-.| ...|.....+.-..|+.+.+-.++.+..+.--.++..++-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 444555555558888888888866666443 3356666777788899999999999888764456667777788888999
Q ss_pred CChHHHHHHHhccC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhh
Q 047571 259 GKIKLARRVFDETG---DRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHA 335 (681)
Q Consensus 259 ~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 335 (681)
|+.+.|..-+++.. ..+.........+|.+.|++.....++..|.+.|.--|...-..
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------- 227 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------- 227 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH-------------------
Confidence 99999988776654 45788899999999999999999999999999887655432110
Q ss_pred hhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC
Q 047571 336 YVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD 412 (681)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 412 (681)
...+|..+++-....+..+.-...|++.... ++..-..++.-+.+.|+.++|.++..+-.+.+..|+
T Consensus 228 ----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 228 ----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred ----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 1123344555555555555555666666542 566677778888888999999998888888776666
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHH
Q 047571 413 VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCI 490 (681)
Q Consensus 413 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~ 490 (681)
.. ..-.+.+.++...-.+..+.-.+.. +.++..+..|...|.+.+.+.+|...|+...+ |+..+|+.+..++.
T Consensus 298 L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~ 372 (400)
T COG3071 298 LC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD 372 (400)
T ss_pred HH----HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 22 2234555666666666655544432 33446777888888888888888888886654 77788888888888
Q ss_pred hcCChhHHHHHHHHhHhCCCCC
Q 047571 491 ENGRLDDALGVFRSMQLSKHRP 512 (681)
Q Consensus 491 ~~~~~~~A~~~~~~m~~~g~~p 512 (681)
+.|+..+|.+..++....-.+|
T Consensus 373 ~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 373 QLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HcCChHHHHHHHHHHHHHhcCC
Confidence 8888888888887766443333
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.2e-08 Score=96.48 Aligned_cols=213 Identities=15% Similarity=0.074 Sum_probs=154.4
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHH
Q 047571 425 QLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGV 501 (681)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~ 501 (681)
-.|+.-.+..-|+..+.....++. .|-.+..+|....+.++.++.|+...+ .|+.+|..-...+.-.+++++|..-
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 356777788888887776533322 266667778888888888888887765 3556777777777777888888888
Q ss_pred HHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC
Q 047571 502 FRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG 579 (681)
Q Consensus 502 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~ 579 (681)
|++.++.. +-+...|..+-.+.-+.+.++.+...|++.+++ ++..+.+|+.....+...++++.|.+.|+...+ |.
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 88887742 223445556656666778888888888888765 566688888888888888999988888887665 32
Q ss_pred -------h--hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 580 -------S--ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 580 -------~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
. ..-..++..- -.+++..|+.++++..+. .| ....|.+|...-.+.|+.++|+++|+....
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 1112222222 348899999999999884 45 567889999999999999999999986543
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.35 E-value=1e-07 Score=93.27 Aligned_cols=291 Identities=16% Similarity=0.218 Sum_probs=184.7
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHHHHHHHHHhC----------------C------ChHHHHHHHHH
Q 047571 348 FVRSSLVDMYCKCRDMNSAWRVFYETEER--NEILWTALMSGYVSN----------------G------RLEQALRSIAW 403 (681)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~----------------~------~~~~A~~~~~~ 403 (681)
..|++|.+-|.+.|.++.|.++|++.... .+.-|..+.++|..- | +++-.+..|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 46788888888888888888888876653 233333333333321 1 12333444444
Q ss_pred HHHcCc-----------CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCC------ChhHHHHHHHHHHhcCChHH
Q 047571 404 MQQEGF-----------RPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLP------NVSIITSLMIMYSKCGVLDY 466 (681)
Q Consensus 404 m~~~g~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~ 466 (681)
+...+. +-+..++..- .-...|+..+....+.++++. +.| -...|..+...|...|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 443321 0111112111 223345667777777777763 222 22457788899999999999
Q ss_pred HHHHHhhCCCCCcch-------HHHHHHHHHhcCChhHHHHHHHHhHhCCC----------CC-------CHHHHHHHHH
Q 047571 467 SLKLFDEMEVRNVIS-------WTAMIDSCIENGRLDDALGVFRSMQLSKH----------RP-------DSVAMARMLS 522 (681)
Q Consensus 467 a~~~~~~~~~~~~~~-------~~~li~~~~~~~~~~~A~~~~~~m~~~g~----------~p-------~~~~~~~ll~ 522 (681)
|..+|++..+-+-.+ |..-...=.++.+++.|+++.++....-- .| +...|...++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 999999998754443 44444444567889999998887754211 11 1122344444
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC----CC-hhhHHHHHHHHHc---CC
Q 047571 523 VSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV----KG-SITWTAIIEAYGY---ND 594 (681)
Q Consensus 523 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~l~~~~~~---~~ 594 (681)
.-...|-++....+++.++...+. +|.+.......+....-++++.+++++-.. |+ ...|+..+.-+.+ ..
T Consensus 486 leEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence 444557788888899999887653 555555566667777889999999998766 55 4578887776654 34
Q ss_pred ChHHHHHHHHHHHhCCCCCCH-HHHHHH-HHHHhccCCHHHHHHHHHHhhh
Q 047571 595 LCQEALSLFDKMRNGGFTPNH-FTFKVL-LSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 595 ~~~~a~~~~~~m~~~g~~p~~-~~~~~l-~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
..+.|..+|++.++ |++|.. .|.-.+ ...=.+.|....|..++++...
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 78999999999999 788843 333222 2223455888888888887654
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=4e-10 Score=110.59 Aligned_cols=192 Identities=15% Similarity=0.076 Sum_probs=118.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHH---HH
Q 047571 445 LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRN---VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVA---MA 518 (681)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~---~~ 518 (681)
+..+.+|.++.++|.-.++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+.... .|... |-
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwY 493 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWY 493 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHH
Confidence 3344555555555555555555555555555422 23444444445555555555555555532 22222 22
Q ss_pred HHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCC
Q 047571 519 RMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDL 595 (681)
Q Consensus 519 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 595 (681)
.+.-.|.+.++++.|.-.|+++.+.+ +.+..+...+...+.+.|+.|+|..+++++.. .|+..--..+..+...++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 33344555555566655555555433 22344556666677777777777777776655 344444455666777899
Q ss_pred hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 596 CQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 596 ~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+++|+..++++++ +.| +...+..+...|.+.|+.+.|+.-|.-+.+
T Consensus 573 ~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 573 YVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 9999999999998 455 567788888899999999999998887754
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.4e-08 Score=97.88 Aligned_cols=453 Identities=13% Similarity=0.031 Sum_probs=298.1
Q ss_pred HHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHH
Q 047571 176 WNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMY 255 (681)
Q Consensus 176 ~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 255 (681)
+..+++-+.... .+..|..+-++....+-.|+ .--.+...+.-.|+.+.|..+...-.-. ..|..+......++
T Consensus 19 ~~~~~r~~l~q~--~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 19 YRRLVRDALMQH--RYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHH--hhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHH
Confidence 556666555555 77777777777666554444 4445677777778888887776544222 34566666777888
Q ss_pred HhcCChHHHHHHHhccCC---------CC--------hhh----HHHHHH-------HHHhcCChHHHHHHHHHHHHcCC
Q 047571 256 FKCGKIKLARRVFDETGD---------RD--------IVV----WGSMIA-------GFAHNRLRWEALDCARWMIREGI 307 (681)
Q Consensus 256 ~~~~~~~~a~~~~~~~~~---------~~--------~~~----~~~li~-------~~~~~~~~~~a~~~~~~m~~~g~ 307 (681)
.+..++++|..++..... .| ..- -+.-.. .|....+.++|.+.|.+..
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al---- 168 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL---- 168 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH----
Confidence 888889999888874321 01 000 011111 2333334455555555443
Q ss_pred CCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhc----C---------
Q 047571 308 YPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYET----E--------- 374 (681)
Q Consensus 308 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~--------- 374 (681)
..|...|..+...... ..-.+.+.++.+... .+.. ....+.+.-..+|+.. .
T Consensus 169 ~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l-~~a~------------~~~ed~e~l~~lyel~~~k~~n~~~~~r~~ 233 (611)
T KOG1173|consen 169 LADAKCFEAFEKLVSA--HMLTAQEEFELLESL-DLAM------------LTKEDVERLEILYELKLCKNRNEESLTRNE 233 (611)
T ss_pred hcchhhHHHHHHHHHH--HhcchhHHHHHHhcc-cHHh------------hhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence 3344444433322211 111111111111111 0000 0001111111222211 0
Q ss_pred -------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCC
Q 047571 375 -------ERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPN 447 (681)
Q Consensus 375 -------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 447 (681)
+.++.....-.+-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+=..+++.- +..
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~ 311 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSK 311 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCC
Confidence 014445555666777889999999999998876 34555566666778888888887777777777653 667
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 047571 448 VSIITSLMIMYSKCGVLDYSLKLFDEMEVRNV---ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVS 524 (681)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 524 (681)
..+|-++..-|.-.|+..+|++.|.+...-|. ..|-.+..+|.-.|..|+|+.-|...-+. ++-....+-.+.--|
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEY 390 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHH
Confidence 77888898888889999999999998776443 47888999999999999999988877653 122222333444567
Q ss_pred ccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC------C----ChhhHHHHHHHHHcCC
Q 047571 525 GQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV------K----GSITWTAIIEAYGYND 594 (681)
Q Consensus 525 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~----~~~~~~~l~~~~~~~~ 594 (681)
.+.++.+.|.++|.+..... +.||.+.+.+.-..-..+.+.+|..+|+.... + -..+++.|..+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 78899999999999887643 44688888888888889999999999987664 1 2456889999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHH
Q 047571 595 LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDIL 661 (681)
Q Consensus 595 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 661 (681)
.+++|+..+++.... .+-|..++.++.-.|...|+++.|++.|.+. +.+.|+..+-..++...
T Consensus 470 ~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa---L~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA---LALKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH---HhcCCccHHHHHHHHHH
Confidence 999999999999986 2558999999999999999999999999944 57788865555555443
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1e-08 Score=96.87 Aligned_cols=400 Identities=10% Similarity=-0.045 Sum_probs=197.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 047571 75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVN-VTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYT 153 (681)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (681)
+-.....+.++|.+++|++.|.+..+. .|+ +.-|.....+|...|+|+++.+.-....+.+ +.-+-.+....+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 455567788999999999999999886 567 7778888888899999999998888777664 333456666777788
Q ss_pred cCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHH---------HHHHcC--CCCChhhHHHHHHHhhc
Q 047571 154 SCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYM---------KMRELG--VQLNVYTFSCVIKSFAG 222 (681)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~---------~m~~~g--~~p~~~~~~~ll~~~~~ 222 (681)
..|++++|+.=+. -..++.++-... -..-+.+++. .|.+.+ +-|+.....+-...+..
T Consensus 195 ~lg~~~eal~D~t---------v~ci~~~F~n~s--~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 195 QLGKFDEALFDVT---------VLCILEGFQNAS--IEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred hhccHHHHHHhhh---------HHHHhhhcccch--hHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 8888888754321 111111111111 1111111111 122112 33444333333333321
Q ss_pred cCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHH----h-cCChHHHHHHHhc-------cCCC---Ch------hhHHH
Q 047571 223 ASALMQGLKTHALLIKNGFVDYLILRTSLIDMYF----K-CGKIKLARRVFDE-------TGDR---DI------VVWGS 281 (681)
Q Consensus 223 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----~-~~~~~~a~~~~~~-------~~~~---~~------~~~~~ 281 (681)
.-. .....+.......+..++. . ...+..|...+.+ -... |. .+.+.
T Consensus 264 ~~~------------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 264 DPK------------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred ccc------------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 100 0000000001111111110 0 0012222222221 1111 11 11222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcC
Q 047571 282 MIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCR 361 (681)
Q Consensus 282 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (681)
-...+.-.|+..+|...|+........++.. |..+...+....+.++....|....+. .+.++.+|.--..++.-.+
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHH
Confidence 2222344577777888887777654333322 555555566666666666666666554 2233333444444444455
Q ss_pred CHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 047571 362 DMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAY 438 (681)
Q Consensus 362 ~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 438 (681)
++++|..-|++...- ++..|-.+.-+.-+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+.
T Consensus 409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 666666666655542 3344444444445555666666666665554 333444555555556666666666666665
Q ss_pred HHHhCCC-------CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHh
Q 047571 439 AVKNQFL-------PNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNV---ISWTAMIDSCIENGRLDDALGVFRSM 505 (681)
Q Consensus 439 ~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m 505 (681)
.++.... +.+.+-.+++..- -.+++..|.+++.+..+-|+ ..|..|...-.+.|+.++|+++|++.
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5542211 1111111111111 12555555555555554333 24555555555555555555555544
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=3.8e-09 Score=94.47 Aligned_cols=153 Identities=12% Similarity=0.077 Sum_probs=69.7
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH----HHHHHHHHhccc
Q 047571 455 MIMYSKCGVLDYSLKLFDEMEVRNV---ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV----AMARMLSVSGQL 527 (681)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~ 527 (681)
..-|...|-+|.|+.+|..+.+.+. .....|+..|-...+|++|+++-+++...|-++... .|.-+...+...
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 3344445555555555555444211 233344455555555555555555554444333222 222333333334
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC----hhhHHHHHHHHHcCCChHHHHHHH
Q 047571 528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG----SITWTAIIEAYGYNDLCQEALSLF 603 (681)
Q Consensus 528 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 603 (681)
.+.+.|...+.+..+.+. -....--.+.+.+...|+++.|.+.++.+.+.| ..+...|..+|...|+.++.+..+
T Consensus 194 ~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445555555554444331 122223334445555555555555555555433 223444455555555555555555
Q ss_pred HHHHh
Q 047571 604 DKMRN 608 (681)
Q Consensus 604 ~~m~~ 608 (681)
.++.+
T Consensus 273 ~~~~~ 277 (389)
T COG2956 273 RRAME 277 (389)
T ss_pred HHHHH
Confidence 55554
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3.3e-08 Score=95.40 Aligned_cols=504 Identities=10% Similarity=-0.006 Sum_probs=302.1
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 047571 69 EKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKL 148 (681)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (681)
+.+..-+..+++-+..+.++..|+-+-++....+ -|+..-..+.+++.-.|+++.|..+...-.-. ..|..+....
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~ 88 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA 88 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence 3445567777888888888888888777776554 45566666788888888888887776654222 5566677777
Q ss_pred HHHhhcCCChhHHHHhhhhcCC-CCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchh
Q 047571 149 VKMYTSCGSFEDAEKVFDESSS-ESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALM 227 (681)
Q Consensus 149 ~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 227 (681)
...+.+..+|+.|..++..... .++..|..--. .+....+.+. ++. ++......+-.=-+.|....+.+
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~----~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~ 158 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA----ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNRE 158 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhcchhhcchhh----hceeccCccc----ccc--cccchhceeeeeeehhhhhccHH
Confidence 7888888888888888874310 11111100000 0000111111 000 01111111111111223333444
Q ss_pred hhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047571 228 QGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGI 307 (681)
Q Consensus 228 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 307 (681)
+|...+.+.... |...+..+...-.. .+-.+.+.|+.+...|... -.+.
T Consensus 159 ~ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~---------~~~e---------------- 207 (611)
T KOG1173|consen 159 EARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAM---------LTKE---------------- 207 (611)
T ss_pred HHHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHh---------hhhh----------------
Confidence 555444443322 22222221111100 0111111111111111100 0011
Q ss_pred CCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHH
Q 047571 308 YPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTAL 384 (681)
Q Consensus 308 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l 384 (681)
+......+.........-+.....-.. .+..+...+..+...-.+-+...+++.+..++++...+. +...+..-
T Consensus 208 --d~e~l~~lyel~~~k~~n~~~~~r~~~-~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ 284 (611)
T KOG1173|consen 208 --DVERLEILYELKLCKNRNEESLTRNED-ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLH 284 (611)
T ss_pred --HHHHHHHHHHhhhhhhccccccccCch-hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHH
Confidence 111111111111000000000000000 000145556666677777888889999999999888775 44566677
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 047571 385 MSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVL 464 (681)
Q Consensus 385 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (681)
|.++...|+..+-..+=.+|.+. .+-...+|-++.-.|...|+..+|.+.|.+....+ +.-...|-.+...|+-.|..
T Consensus 285 ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 285 IACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchH
Confidence 78888999988888888888876 44566788888888888899999999999877644 22345678888899999999
Q ss_pred HHHHHHHhhCCC--CCc-chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 047571 465 DYSLKLFDEMEV--RNV-ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVL 541 (681)
Q Consensus 465 ~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 541 (681)
++|...+....+ |.. ..+--+.--|.+.++..-|.+.|.+.... .+-|+..++-+.-..-..+.+.+|..+|...+
T Consensus 363 dQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 999888766554 221 12223344577889999999999988764 24445556666555666788999999998776
Q ss_pred Hc----C--CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047571 542 KK----D--FASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT 612 (681)
Q Consensus 542 ~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 612 (681)
.. + ..--..+++.|..+|.+.+++++|...+++... .+..++.++.-.|...|+++.|++.|.+..- +.
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~ 519 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LK 519 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cC
Confidence 31 1 112355688899999999999999999998776 6788999999999999999999999999887 67
Q ss_pred CCHHHHHHHHHHH
Q 047571 613 PNHFTFKVLLSIC 625 (681)
Q Consensus 613 p~~~~~~~l~~~~ 625 (681)
||-.+-..++..+
T Consensus 520 p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 520 PDNIFISELLKLA 532 (611)
T ss_pred CccHHHHHHHHHH
Confidence 8776666665543
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=2.3e-09 Score=95.83 Aligned_cols=216 Identities=9% Similarity=0.059 Sum_probs=158.1
Q ss_pred CChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-CCcc------hHHHHHHHHHhcCChhHHH
Q 047571 427 KALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV-RNVI------SWTAMIDSCIENGRLDDAL 499 (681)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~li~~~~~~~~~~~A~ 499 (681)
.+.++|.++|-+|.+.. +-+..+--+|.+.|.+.|.+|.|+++-+.+.+ ||.. ..-.|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34445555555554422 22333334455666666666666666665554 3322 2234556688899999999
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571 500 GVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASV----PFVAAENIKMYGMCGFLECAKLVFDAV 575 (681)
Q Consensus 500 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 575 (681)
.+|..+.+.| .--......++..|....+|++|++.-+++.+.+-++. ...|..+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999998865 33456788999999999999999999999988765543 456777888888889999999999998
Q ss_pred CCCC---hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 576 PVKG---SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 576 ~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
...| +..--.+.+.....|++++|++.++...+.+..--..+...|..+|.+.|+.++....+..+.+.
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 8833 33334466778899999999999999999754445677889999999999999999999888764
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.4e-11 Score=81.41 Aligned_cols=50 Identities=20% Similarity=0.466 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc
Q 047571 477 RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ 526 (681)
Q Consensus 477 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 526 (681)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.5e-11 Score=80.25 Aligned_cols=50 Identities=26% Similarity=0.561 Sum_probs=43.4
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 047571 578 KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ 627 (681)
Q Consensus 578 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 627 (681)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888864
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.3e-07 Score=88.38 Aligned_cols=176 Identities=13% Similarity=0.090 Sum_probs=104.2
Q ss_pred CChHHHHHHHhhCCCCC-cchHHHHHHHHH--hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHH
Q 047571 462 GVLDYSLKLFDEMEVRN-VISWTAMIDSCI--ENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHG 538 (681)
Q Consensus 462 g~~~~a~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 538 (681)
+..+.+.++........ ...+.+++..+. +...+..+.+++...-+..-.-.....-.++......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44455555555554322 233344433322 222456666666666554211112333444455566777777777777
Q ss_pred --------HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC------CChhhHHHH----HHHHHcCCChHHHH
Q 047571 539 --------QVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV------KGSITWTAI----IEAYGYNDLCQEAL 600 (681)
Q Consensus 539 --------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l----~~~~~~~~~~~~a~ 600 (681)
.+.+ +...|.+...++..|.+.++.+-|..++.+... .+....+++ ...-.++|+-++|.
T Consensus 401 ~~~~~~~ss~~~--~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 401 LFLESWKSSILE--AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHhhhhhhhhhh--hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 3333 233456667777778777776666666655443 222333333 33344679999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047571 601 SLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVM 641 (681)
Q Consensus 601 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (681)
.+++++.+.+ ++|..+...++.+|++. +++.|..+-..+
T Consensus 479 s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 479 SLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999864 67889999999999887 467777665533
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=3.1e-09 Score=99.17 Aligned_cols=191 Identities=13% Similarity=0.045 Sum_probs=118.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047571 483 TAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC 562 (681)
Q Consensus 483 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 562 (681)
..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...+++..+.. +.+...+..+...+...
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc
Confidence 333444444444444444444444321 1223333444444444455555555555444432 12334445555555666
Q ss_pred CCHHHHHHHhhhCCC-----CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047571 563 GFLECAKLVFDAVPV-----KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRI 637 (681)
Q Consensus 563 g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 637 (681)
|++++|...+++... .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.++
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666655543 113356667777888899999999999888753 33567788888888999999999999
Q ss_pred HHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 638 FNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
+++..+. .+.+...+..++.++...|+.++|.++.+.+.
T Consensus 192 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 192 LERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9888764 23345667778888888899999988877654
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.23 E-value=3e-07 Score=90.45 Aligned_cols=440 Identities=12% Similarity=0.019 Sum_probs=244.3
Q ss_pred cCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC---ChhhHHHHHHHHHhcCChHHHHHHH
Q 047571 223 ASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR---DIVVWGSMIAGFAHNRLRWEALDCA 299 (681)
Q Consensus 223 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 299 (681)
.+++...+++.+.+.+ +.+-...+.....-.+...|+-++|.......... +.+.|..+.-.+-...++++|+++|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3455555555555554 22223334333333445566667776666655443 4456666666666667777777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---
Q 047571 300 RWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER--- 376 (681)
Q Consensus 300 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 376 (681)
......+ +-|...+.-+--.-++.|+++..........+. .+.....|..++.++.-.|+...|..++++....
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7666542 223444555544455556665555555444443 3334445556666666667777776666554321
Q ss_pred --ChhhHH------HHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHH-HHHHHHhhccCChhHHHHHHHHHHHhCCCCC
Q 047571 377 --NEILWT------ALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTV-ATVIPVCSQLKALNHGKEIHAYAVKNQFLPN 447 (681)
Q Consensus 377 --~~~~~~------~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 447 (681)
+...|. --.....+.|..+.|++.+..-... ..|...+ .+-...+.+.+++++|..++..+...+ +.+
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn 252 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDN 252 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chh
Confidence 221111 1123345667777777666554432 2233332 233345667778888888888777754 333
Q ss_pred hhHHHHHHHHHHhcCChHHHH-HHHhhCCC-------CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHH
Q 047571 448 VSIITSLMIMYSKCGVLDYSL-KLFDEMEV-------RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMAR 519 (681)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 519 (681)
...|..+..++.+..+.-++. .+|....+ |-....+.+ .-..-.+..-+++..+.+.|+++-...+.+
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S 328 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL----NGEELKEIVDKYLRPLLSKGVPSVFKDLRS 328 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh----CcchhHHHHHHHHHHHhhcCCCchhhhhHH
Confidence 334444444554333333333 55554443 111111111 111123334456677777776654333333
Q ss_pred HHHHhccccchHHHHHHHHHHHH----cC----------CCCChhH--HHHHHHHHHhcCCHHHHHHHhhhCCCCCh---
Q 047571 520 MLSVSGQLKALKLGKEIHGQVLK----KD----------FASVPFV--AAENIKMYGMCGFLECAKLVFDAVPVKGS--- 580 (681)
Q Consensus 520 ll~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--- 580 (681)
+ +-.-...+-..++...+.. .| -+|++.. +..+++.|-+.|+++.|...++......+
T Consensus 329 L---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTli 405 (700)
T KOG1156|consen 329 L---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLI 405 (700)
T ss_pred H---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHH
Confidence 3 3222222222222222221 11 1344443 35667888899999999999998888433
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC--C-hhH---H
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA--L-EEH---Y 654 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~-~~~---~ 654 (681)
..|-.=.+.+...|++++|..++++..+.. .||...-..-+.-..++.+.++|.++.....+. |... + ..+ |
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~-~~~~~~~L~~mqcmW 483 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE-GFGAVNNLAEMQCMW 483 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc-ccchhhhHHHhhhHH
Confidence 344444577888999999999999999876 677766666777778999999999999888765 4311 1 111 1
Q ss_pred H--HHHHHHhhcCCHHHHHHHHHhcc
Q 047571 655 L--IMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 655 ~--~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
- .=+++|.+.|++-+|.+=+..+.
T Consensus 484 f~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 484 FQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 1 12567888888888887666553
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.7e-07 Score=85.57 Aligned_cols=263 Identities=9% Similarity=-0.026 Sum_probs=181.0
Q ss_pred CCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhh---HHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHH
Q 047571 342 RYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEIL---WTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVAT 418 (681)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 418 (681)
.++.++.....+..++...|+.++|...|+....-|+.+ .......+.+.|+.++...+...+.... .-+...|-.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 355566666778888888888888888888766543332 2222333457788888888777776542 122233333
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCh
Q 047571 419 VIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRL 495 (681)
Q Consensus 419 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 495 (681)
-.......++++.|..+-++.++.+ +.+...|-.=...+...|++++|.-.|+.... -+..+|..|+.+|...|++
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 3344556778889988888877754 33455555555677888999999999987764 3678999999999999999
Q ss_pred hHHHHHHHHhHhCCCCCCHHHHHHHH-HHhc-cccchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHh
Q 047571 496 DDALGVFRSMQLSKHRPDSVAMARML-SVSG-QLKALKLGKEIHGQVLKKDFASV-PFVAAENIKMYGMCGFLECAKLVF 572 (681)
Q Consensus 496 ~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 572 (681)
.+|.-+-+..... +.-+..+...+. ..|. ....-++|..+++...+. .|+ ......+...+...|..+++..++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 9998877665443 233444444442 2222 233457788888776654 333 445567777888888888888888
Q ss_pred hhCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571 573 DAVPV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 573 ~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 609 (681)
+.... +|....+.|.+.+...+.+++|++.|......
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 87666 78888888888888888888888888887774
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=5.2e-07 Score=87.81 Aligned_cols=433 Identities=13% Similarity=0.058 Sum_probs=221.0
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhH--HHHHHH--hcCChHHHH
Q 047571 190 RYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTS--LIDMYF--KCGKIKLAR 265 (681)
Q Consensus 190 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~~~~~~~a~ 265 (681)
++++|.....++...+ +-|...+..-+-++.+.+.+++|+.+.+. .+.. .+++. +=.+|| +.+..|+|+
T Consensus 27 e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~---~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGAL---LVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchh---hhcchhhHHHHHHHHHcccHHHHH
Confidence 7777777777776654 33444556666677777777777744332 2210 11111 223333 567778887
Q ss_pred HHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhhhhhhcccchhhhhhhhccCCC
Q 047571 266 RVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSV-VLTILLPVIGEAWARKLGQEVHAYVLKNERYS 344 (681)
Q Consensus 266 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 344 (681)
..++.....+..+...-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-..
T Consensus 100 k~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--------------------- 158 (652)
T KOG2376|consen 100 KTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--------------------- 158 (652)
T ss_pred HHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---------------------
Confidence 77775444455555556666777788888888887776654321111 11111111000
Q ss_pred CCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHH---HHHHhCCChHHHHHHHHHHHHcC-------------
Q 047571 345 EELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALM---SGYVSNGRLEQALRSIAWMQQEG------------- 408 (681)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~g------------- 408 (681)
..+. +.+........+|..+. -.+...|++.+|+++++...+.+
T Consensus 159 -------------------l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEe 218 (652)
T KOG2376|consen 159 -------------------LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEE 218 (652)
T ss_pred -------------------hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhh
Confidence 0000 11122211111222211 22344555555555555441110
Q ss_pred cCCCHHHH-HHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHH---HHHhcCChH--HHHHHHhhCCC------
Q 047571 409 FRPDVVTV-ATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMI---MYSKCGVLD--YSLKLFDEMEV------ 476 (681)
Q Consensus 409 ~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~--~a~~~~~~~~~------ 476 (681)
+.-...+. ..+.-++...|+.++|..++...++.+. +|........+ +.....++- .++..++....
T Consensus 219 ie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~ 297 (652)
T KOG2376|consen 219 IEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL 297 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence 00000111 1122234455666666666666665542 22221111111 111111111 11112221111
Q ss_pred ---------CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcccc--chHHHHHHHHHHHHcCC
Q 047571 477 ---------RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLK--ALKLGKEIHGQVLKKDF 545 (681)
Q Consensus 477 ---------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~ 545 (681)
.....-+.++..|.. .-+.+.++....- +..|. ..+..++..+.+.. ....+.+++....+...
T Consensus 298 l~~Ls~~qk~~i~~N~~lL~l~tn--k~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p 372 (652)
T KOG2376|consen 298 LSKLSKKQKQAIYRNNALLALFTN--KMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence 111112223333322 2233333322221 12333 34555555554332 35666677666665544
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHhh--------hCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhC---C--
Q 047571 546 ASVPFVAAENIKMYGMCGFLECAKLVFD--------AVPV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNG---G-- 610 (681)
Q Consensus 546 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g-- 610 (681)
.-...+.-..++.....|+++.|.+++. .+.+ .-+.+...+...+.+.++.+.|..++.+...- .
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 4445566777888999999999999998 4444 22344555666677777766666666665421 0
Q ss_pred CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 611 FTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 611 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
..+ -..++.-++..-.+.|+-++|...++++.+ -.++|......++-+|++. +.+.|..+-.+++.
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 112 223444555555677999999999999987 3566788999999999865 58888888777764
No 66
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=2.1e-06 Score=85.51 Aligned_cols=138 Identities=13% Similarity=0.087 Sum_probs=76.4
Q ss_pred HHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHH
Q 047571 217 IKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEAL 296 (681)
Q Consensus 217 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 296 (681)
+.+......|.+|..+++.+..... ...-|..+.+.|...|+++.|.++|-+. ..++-.|..|.+.|+++.|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHH
Confidence 3344455666666666665554432 2234455566666677777777766542 33555566667777777766
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhc
Q 047571 297 DCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYET 373 (681)
Q Consensus 297 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 373 (681)
++-.+. .|.......|..-..-+...|.+.+|++++-.+... ...|.+|-+.|..+..+++..+.
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p----------~~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEP----------DKAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCc----------hHHHHHHHhhCcchHHHHHHHHh
Confidence 665433 233334445555555555666666666665544222 23455566666666665555443
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.19 E-value=4.5e-09 Score=98.08 Aligned_cols=194 Identities=12% Similarity=0.080 Sum_probs=145.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 047571 448 VSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVS 524 (681)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 524 (681)
...+..+...+...|++++|.+.+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 44566667777777778777777776653 2 34466667777777888888888888777653 33445566667777
Q ss_pred ccccchHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHH
Q 047571 525 GQLKALKLGKEIHGQVLKKDF-ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEAL 600 (681)
Q Consensus 525 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~ 600 (681)
...|++++|...+....+... ......+..+...+...|++++|...+++... | +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 777888888888887776432 22345667778888888999999998887766 3 3567888889999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 601 SLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 601 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
..+++..+. .+.+...+..+...+...|+.++|.++++.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999886 355777788888889999999999999887764
No 68
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.17 E-value=8.7e-07 Score=88.17 Aligned_cols=399 Identities=11% Similarity=0.052 Sum_probs=215.1
Q ss_pred HHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHH
Q 047571 215 CVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWE 294 (681)
Q Consensus 215 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 294 (681)
..|..|....+|+++..+-+ ..|.+.-...-.+.++++...|+-++|-++-+. +..+. +.|..|.+.|.+..
T Consensus 562 ~aigmy~~lhkwde~i~lae---~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s----dgd~l-aaiqlyika~~p~~ 633 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAE---AKGHPALEKLKRSYLQALMDTGQDEKAAELKES----DGDGL-AAIQLYIKAGKPAK 633 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHH---hcCChHHHHHHHHHHHHHHhcCchhhhhhhccc----cCccH-HHHHHHHHcCCchH
Confidence 34555666666777766533 234333334445556666777777776554322 22222 34667788888777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcC
Q 047571 295 ALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETE 374 (681)
Q Consensus 295 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 374 (681)
|......= ..+..|......+..++.+..-++.|-.+|+.+... ...+.+|-+-+.+.+|.++-+-.-
T Consensus 634 a~~~a~n~--~~l~~de~il~~ia~alik~elydkagdlfeki~d~----------dkale~fkkgdaf~kaielarfaf 701 (1636)
T KOG3616|consen 634 AARAALND--EELLADEEILEHIAAALIKGELYDKAGDLFEKIHDF----------DKALECFKKGDAFGKAIELARFAF 701 (1636)
T ss_pred HHHhhcCH--HHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH----------HHHHHHHHcccHHHHHHHHHHhhC
Confidence 76654211 112345555555555555555555555555544332 223333333333444443322211
Q ss_pred CCChhh-HHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHH
Q 047571 375 ERNEIL-WTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITS 453 (681)
Q Consensus 375 ~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 453 (681)
...++. =......+...|+++.|+..|-+... .--.+.+....+.+.+|..+++.+...+. ...-|..
T Consensus 702 p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~ 770 (1636)
T KOG3616|consen 702 PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGE 770 (1636)
T ss_pred cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchH
Confidence 111111 12233344555666666655433221 12234455566777888888777666432 2344666
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHH
Q 047571 454 LMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLG 533 (681)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 533 (681)
+.+-|+..|+++.|+++|.+.. .++-.|..|.+.|+|+.|.++-.+.. |.......|..-..-.-..|++.+|
T Consensus 771 iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhh
Confidence 7777888888888888886643 35566777888888888887765553 2233333444444445556666666
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047571 534 KEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT 612 (681)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 612 (681)
.+++-.+. .|+ ..+++|-+.|..+...++.++-.... ..+...+..-|-..|+...|..-|-+..+
T Consensus 844 eqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---- 910 (1636)
T KOG3616|consen 844 EQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---- 910 (1636)
T ss_pred hheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----
Confidence 66553321 122 34667777777777777766544311 33555566667777777777766544332
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 613 PNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 613 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
|...++.|...+.|++|.++-. ...|-.. -..+.-..+++=--+.|.+++++
T Consensus 911 -----~kaavnmyk~s~lw~dayriak---tegg~n~----~k~v~flwaksiggdaavkllnk 962 (1636)
T KOG3616|consen 911 -----FKAAVNMYKASELWEDAYRIAK---TEGGANA----EKHVAFLWAKSIGGDAAVKLLNK 962 (1636)
T ss_pred -----HHHHHHHhhhhhhHHHHHHHHh---ccccccH----HHHHHHHHHHhhCcHHHHHHHHh
Confidence 5556666777777777766654 2212222 12222333343334566666665
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=4e-06 Score=76.40 Aligned_cols=404 Identities=9% Similarity=0.015 Sum_probs=198.7
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571 79 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF 158 (681)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (681)
+.-+....++..|+.+++.-...+-.-...+-..+..++.+.|++++|...+..+.... .++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 66677788999999988877654433233444455666778899999999998887755 55555555566555566888
Q ss_pred hHHHHhhhhcCCCCCccHHHHHHHHH-HcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHH
Q 047571 159 EDAEKVFDESSSESVYPWNALLRGAV-IAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLI 237 (681)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 237 (681)
.+|..+-.+.++ ....+.++-.++ +.+ +-.+-...-+.+.+ ...---++....-..-.+.+|..++....
T Consensus 108 ~eA~~~~~ka~k--~pL~~RLlfhlahkln--dEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 108 IEAKSIAEKAPK--TPLCIRLLFHLAHKLN--DEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHhhCCC--ChHHHHHHHHHHHHhC--cHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887765432 222333333222 222 22222222222111 00111112222222334566666666655
Q ss_pred HhCCCCCcHHHhH-HHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 047571 238 KNGFVDYLILRTS-LIDMYFKCGKIKLARRVFDETGD--R-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVV 313 (681)
Q Consensus 238 ~~g~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 313 (681)
..+ |.-...|. +.-+|.+..-++-+.++++-..+ | +....|.......+.-+-..|.+-.+++.+.+-..
T Consensus 179 ~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 179 QDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred hcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 432 22222222 22344555555555555543322 2 23334444433333322223333333333322110
Q ss_pred HHHHHHHHhhh-----hhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 047571 314 LTILLPVIGEA-----WARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGY 388 (681)
Q Consensus 314 ~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 388 (681)
|. .+.-+++. ++-+.|.+++-.+++. - +...-.|+-.|.+.+++.+|..+.+++.-.++.-|-.-.-.+
T Consensus 253 ~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~---I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~ 326 (557)
T KOG3785|consen 253 YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH---I--PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVF 326 (557)
T ss_pred ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh---C--hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHH
Confidence 11 11111111 2334444444333332 1 122234555677777777777777776654433332222222
Q ss_pred HhCCC-------hHHHHHHHHHHHHcCcCCCHHHH-HHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 047571 389 VSNGR-------LEQALRSIAWMQQEGFRPDVVTV-ATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK 460 (681)
Q Consensus 389 ~~~~~-------~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (681)
...|+ ..-|.+.|+..-+.+..-|...- -.+.+++.-..+++.+..++..+...-...|...+| +.++++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 22222 33455555544444433332221 223333444455666666666665544334444443 5666777
Q ss_pred cCChHHHHHHHhhCCCC---CcchHHH-HHHHHHhcCChhHHHHHHHHh
Q 047571 461 CGVLDYSLKLFDEMEVR---NVISWTA-MIDSCIENGRLDDALGVFRSM 505 (681)
Q Consensus 461 ~g~~~~a~~~~~~~~~~---~~~~~~~-li~~~~~~~~~~~A~~~~~~m 505 (681)
.|.+.+|+++|-.+..| |..+|.+ |.++|.+.+.++-|+.++-++
T Consensus 406 tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 77777777777666653 3445544 345666777777766665444
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=1.9e-08 Score=85.93 Aligned_cols=192 Identities=15% Similarity=0.007 Sum_probs=152.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047571 482 WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM 561 (681)
Q Consensus 482 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 561 (681)
...|.-.|...|+...|.+-+++..+.. +-+..++..+...|.+.|..+.|.+.|++.++.. +-+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3445566777777777777777777652 3334466666777777788888888777777653 3357788888999999
Q ss_pred cCCHHHHHHHhhhCCC-CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047571 562 CGFLECAKLVFDAVPV-KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACR 636 (681)
Q Consensus 562 ~g~~~~a~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 636 (681)
.|++++|...|++... |. ..+|..+..+..+.|+.+.|...|++..+.. +-.+.+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 9999999999998777 54 5689999988899999999999999999863 3466788889999999999999999
Q ss_pred HHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 637 IFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
+++......+ ++.++....|+.-.+.||.+.|.++=.++.
T Consensus 195 ~~~~~~~~~~--~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 195 YLERYQQRGG--AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHhccc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999887533 888999999999999999999988755543
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=7.7e-08 Score=97.11 Aligned_cols=175 Identities=11% Similarity=0.012 Sum_probs=121.4
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc----C----------CCCCh--hHHHHHHHHHHh
Q 047571 498 ALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK----D----------FASVP--FVAAENIKMYGM 561 (681)
Q Consensus 498 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~ 561 (681)
+...+..+..+|+++ +|..+-..|....+.+....++...... + -.|+. -++..+.+.|-.
T Consensus 130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 444556666667544 3444444455555555555555544321 1 12333 244666788888
Q ss_pred cCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047571 562 CGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIF 638 (681)
Q Consensus 562 ~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (681)
.|++++|.+++++... |. +..|..-...+-+.|++++|.+.++...+.. .-|...-+-.+..+.+.|+.++|.+++
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998777 54 5567777888899999999999999999864 447777777888889999999999999
Q ss_pred HHhhhcCCCCCChhH--------HHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 639 NVMSRGYKIEALEEH--------YLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 639 ~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
....+. +..|.... ....+.+|.+.|++..|+..+..+
T Consensus 286 ~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 286 SLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 988775 43443221 244578899999999999877665
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.12 E-value=4.9e-06 Score=82.17 Aligned_cols=447 Identities=12% Similarity=0.050 Sum_probs=214.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCc---cHHHHHHHHHH
Q 047571 109 TFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVY---PWNALLRGAVI 185 (681)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~ 185 (681)
.|..++..| ..+++...+.+.+.+.+ +.+-...+.....-.+...|+-++|......-.+.|+. +|.++.-.+..
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 344444443 44566666666666665 22333344433333445556677776666554433332 24443322222
Q ss_pred cCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHH
Q 047571 186 AGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLAR 265 (681)
Q Consensus 186 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 265 (681)
.. ++++|+.+|...... .|| |...+..+.-.-+..++++...
T Consensus 88 dK--~Y~eaiKcy~nAl~~--~~d----------------------------------N~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 88 DK--KYDEAIKCYRNALKI--EKD----------------------------------NLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hh--hHHHHHHHHHHHHhc--CCC----------------------------------cHHHHHHHHHHHHHHHhhhhHH
Confidence 22 555555555554432 222 2333333322223333333333
Q ss_pred HHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHH------hhhhhhcccchhhh
Q 047571 266 RVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREG-IYPNSVVLTILLPVI------GEAWARKLGQEVHA 335 (681)
Q Consensus 266 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~------~~~~~~~~a~~~~~ 335 (681)
.......+ .....|..+..++.-.|+...|..+++...+.. -.|+...|......+ ...|..+.|.+.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 32222221 233445555555566666666666666665543 234444443332222 22233333433333
Q ss_pred hhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHH-HHHHHHHhCCChHHHH-HHHHHHHHc---C
Q 047571 336 YVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER--NEILWT-ALMSGYVSNGRLEQAL-RSIAWMQQE---G 408 (681)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~-~li~~~~~~~~~~~A~-~~~~~m~~~---g 408 (681)
..... +......-..-...+.+.+++++|..++..+..+ |...|. .+..++.+-.+.-+++ .+|....+. .
T Consensus 210 ~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 210 DNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 22221 1122222234455666777777777777777664 333333 3333333222223333 444444332 1
Q ss_pred cCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH----HHHhhCC---------
Q 047571 409 FRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL----KLFDEME--------- 475 (681)
Q Consensus 409 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~----~~~~~~~--------- 475 (681)
-.|-... +.......-.+....++..+.+.|+++-.....+ .|-.-.+.+-.+ .+...+.
T Consensus 288 e~p~Rlp----lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S---Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 288 ECPRRLP----LSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRS---LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred ccchhcc----HHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHH---HHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 1111111 1111112223334445555566665543222222 221111111111 1111111
Q ss_pred -----CCCcc--hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHHHHHHHHHHHHcCCCC
Q 047571 476 -----VRNVI--SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKLGKEIHGQVLKKDFAS 547 (681)
Q Consensus 476 -----~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 547 (681)
.|... ++--++..+-+.|+++.|+..++....+ .|+.. -|..-.+.+...|+++.|..++++..+.+ .+
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~a 437 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TA 437 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-ch
Confidence 12222 3344566677788888888888877764 55543 34444566777788888888888777655 34
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChh----------hHHHH--HHHHHcCCChHHHHHHHHHHH
Q 047571 548 VPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSI----------TWTAI--IEAYGYNDLCQEALSLFDKMR 607 (681)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~l--~~~~~~~~~~~~a~~~~~~m~ 607 (681)
|..+-..-+....++.+.++|.++.....+.+.. .|-.+ ..+|.+.|++..|++-|....
T Consensus 438 DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 438 DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 5555556667777778888888887766663311 23222 455667777777776555543
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=4e-09 Score=94.26 Aligned_cols=223 Identities=11% Similarity=0.018 Sum_probs=161.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 047571 382 TALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKC 461 (681)
Q Consensus 382 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (681)
+.+.++|.+.|.+.+|.+.|+.-.+. .|-..||..+-.+|.+..++..|+.++.+-.+. ++-++.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777888888888888888877765 466667777888888888888888888776654 234444445667777778
Q ss_pred CChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHH
Q 047571 462 GVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHG 538 (681)
Q Consensus 462 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 538 (681)
++.++|.++++...+ .++.....+...|.-.++++-|+..|+++.+.|+. +...|..+.-+|...++++.+...|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888888888888765 34455555666777888999999999999998854 55677777778888888888888888
Q ss_pred HHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHhhhCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 539 QVLKKDFASV--PFVAAENIKMYGMCGFLECAKLVFDAVPVK---GSITWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 539 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
.....--.|+ .++|-.+.......|++.-|.+.|+-.... +..++|.|.-.-.+.|++++|..+++...+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7776433333 556666666667777777777777766552 255677776666677777777777776665
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=2.4e-07 Score=84.12 Aligned_cols=448 Identities=12% Similarity=0.017 Sum_probs=243.6
Q ss_pred HHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcC
Q 047571 180 LRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCG 259 (681)
Q Consensus 180 l~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 259 (681)
+.-+.... ++.+|+.+++--...+-.-...+--.+...+...|++++|...+..+.+.. .++......|..++.-.|
T Consensus 29 Ledfls~r--DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNR--DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcc--cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 66677777 888888888775544322222333344456678888998888888777643 455566666777777788
Q ss_pred ChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhh
Q 047571 260 KIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLK 339 (681)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (681)
.+.+|..+-....+ +...-..|...--+.++-++...+-+.+.+. ...-.+|.......-.+++|.+++..+..
T Consensus 106 ~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888887765432 2223333444445566666655555544331 11112222222233456666677666654
Q ss_pred ccCCCCCchHHh-HHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHH
Q 047571 340 NERYSEELFVRS-SLVDMYCKCRDMNSAWRVFYETEE--R-NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVT 415 (681)
Q Consensus 340 ~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 415 (681)
. .|.....| .+.-+|.+.+-++-+.++++.... | +..+.|.......+.=.-..|.+-...+.+.+-..
T Consensus 180 d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 180 D---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred c---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 4 12222222 233345555556655555544332 2 23333433333333222233333344444332111
Q ss_pred HHHHHHHhhc-----cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHH
Q 047571 416 VATVIPVCSQ-----LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCI 490 (681)
Q Consensus 416 ~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 490 (681)
...+.-+++ -..-+.|.+++--+.+. -|... -.|+-.|.+.+++++|..+.+++.-..+.-|-.-.-.+.
T Consensus 253 -~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~a 327 (557)
T KOG3785|consen 253 -YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEAR--LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFA 327 (557)
T ss_pred -chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHhh--hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHH
Confidence 111222222 22345566665544432 22222 224556778899999999888876544433322222233
Q ss_pred hcCC-------hhHHHHHHHHhHhCCCCCCHHH-HHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047571 491 ENGR-------LDDALGVFRSMQLSKHRPDSVA-MARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC 562 (681)
Q Consensus 491 ~~~~-------~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 562 (681)
..|+ ..-|.+.|+-.-+.+..-|... -..+.+++--..+++...-++..+...-.. |....-.+.++++..
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~at 406 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLAT 406 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHh
Confidence 3332 3345555555444443333221 223344444556677777777666654333 333344578888888
Q ss_pred CCHHHHHHHhhhCCCC---ChhhHHH-HHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCCHHHHHHH
Q 047571 563 GFLECAKLVFDAVPVK---GSITWTA-IIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFK-VLLSICNQAGFADEACRI 637 (681)
Q Consensus 563 g~~~~a~~~~~~~~~~---~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~ 637 (681)
|++.+|+++|-.+..| |..+|.+ |.+.|.+.+..+.|.+++-++.. +.+..+.. .+..-|.+.+.+=-|.+.
T Consensus 407 gny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKA 483 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKA 483 (557)
T ss_pred cChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998887773 4566765 45667788888888666544432 33444443 444678888888888888
Q ss_pred HHHhhhcCCCCCChhHHH
Q 047571 638 FNVMSRGYKIEALEEHYL 655 (681)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~ 655 (681)
|+.+.. ..|+++.|.
T Consensus 484 Fd~lE~---lDP~pEnWe 498 (557)
T KOG3785|consen 484 FDELEI---LDPTPENWE 498 (557)
T ss_pred hhHHHc---cCCCccccC
Confidence 887764 355555553
No 75
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=5.7e-06 Score=83.67 Aligned_cols=507 Identities=12% Similarity=0.091 Sum_probs=257.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhC-CC--------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhH
Q 047571 74 AIYKDIQRFARQNKLKEALVILDYMDQQ-GI--------PVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFL 144 (681)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 144 (681)
.|..+.+-+.+.++.+-|.-.+..|... |. .++ .+=.-+.......|.+++|..+|.+-++.
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-------- 829 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY-------- 829 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH--------
Confidence 4666666666666666666666555321 10 111 11111222223456666666666665543
Q ss_pred HHHHHHHhhcCCChhHHHHhhhhcCCCCCc-cHHHHHHHHHHcCCcChhhHHHHHHHH----------HHc---------
Q 047571 145 RTKLVKMYTSCGSFEDAEKVFDESSSESVY-PWNALLRGAVIAGKKRYRGVLFNYMKM----------REL--------- 204 (681)
Q Consensus 145 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~m----------~~~--------- 204 (681)
..|-..|...|.|++|.++-+.-.+-... +|.....-+-..+ +.+.|++.|++- ...
T Consensus 830 -DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~--Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 830 -DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR--DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred -HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc--cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 34555666677788877776643332222 2444444444444 777777777651 111
Q ss_pred CCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHH
Q 047571 205 GVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIA 284 (681)
Q Consensus 205 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 284 (681)
.-.-|...|...-..+-..|+.+.|+.++...+. |-.+++..|-.|+.++|-++-++ ..|......+..
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR 975 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLAR 975 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh--cccHHHHHHHHH
Confidence 0112333344444444455666666666554432 33455556666777766666554 245667777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhh---------------hcccchhhhhhhhccCCCCCchH
Q 047571 285 GFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWA---------------RKLGQEVHAYVLKNERYSEELFV 349 (681)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------------~~~a~~~~~~~~~~~~~~~~~~~ 349 (681)
.|-..|++.+|..+|.+.. +|...|+.|...+- .-.|...|+..- .-
T Consensus 976 ~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---------~~ 1037 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---------GY 1037 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---------hh
Confidence 8888888888888887654 23333333332221 111222222111 01
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC--------------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHH
Q 047571 350 RSSLVDMYCKCRDMNSAWRVFYETEE--------------RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVT 415 (681)
Q Consensus 350 ~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 415 (681)
....+..|-+.|.+.+|+++--+-.+ .|+...+--.+-++...++++|..++-..++
T Consensus 1038 ~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~--------- 1108 (1416)
T KOG3617|consen 1038 AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE--------- 1108 (1416)
T ss_pred hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------
Confidence 12334556666666666655322222 1444555555556666667776666654443
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHH-hCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHH
Q 047571 416 VATVIPVCSQLKALNHGKEIHAYAVK-NQFLPNV----SIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCI 490 (681)
Q Consensus 416 ~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 490 (681)
|.-.+..| +..++.--.++-+.|.- ..-.|+. .+...+...|.+.|.+..|-+-|.+.-.+ -..++++.
T Consensus 1109 ~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLL 1182 (1416)
T KOG3617|consen 1109 FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSAMRALL 1182 (1416)
T ss_pred HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHHHHHHH
Confidence 22222222 22222222222222221 1112222 33445566677777777777766554321 12345555
Q ss_pred hcCChhHHHHHH-------------HHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047571 491 ENGRLDDALGVF-------------RSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIK 557 (681)
Q Consensus 491 ~~~~~~~A~~~~-------------~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 557 (681)
+.|+.++..-.- +-++....+.+..+...++..|.+...++.--.+|+....-.+ .- .+
T Consensus 1183 KSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEi----ee----~q 1254 (1416)
T KOG3617|consen 1183 KSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEI----EE----LQ 1254 (1416)
T ss_pred hcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhH----HH----Hh
Confidence 666554321110 1112233455666666666666666555555555443322110 00 11
Q ss_pred HHHh-cCCHHHHHHHhhhCCCCC--hhhHHHH----------HHHHH-cCCChHHHHHHHHHHHhCCCCCC----HHHHH
Q 047571 558 MYGM-CGFLECAKLVFDAVPVKG--SITWTAI----------IEAYG-YNDLCQEALSLFDKMRNGGFTPN----HFTFK 619 (681)
Q Consensus 558 ~~~~-~g~~~~a~~~~~~~~~~~--~~~~~~l----------~~~~~-~~~~~~~a~~~~~~m~~~g~~p~----~~~~~ 619 (681)
-|.+ .|-+++|...+.++..++ ...|+.| +.... -..|..+.+.-...|.+...-|| ...|.
T Consensus 1255 ~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a 1334 (1416)
T KOG3617|consen 1255 TYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFA 1334 (1416)
T ss_pred hhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHH
Confidence 1222 255666777766666533 2223333 22211 12345555555555665443333 46788
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 620 VLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
.||..+....++..|-+.+.+|.++
T Consensus 1335 ~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1335 LLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc
Confidence 8999999999999999999999875
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=4.1e-09 Score=94.17 Aligned_cols=223 Identities=12% Similarity=0.041 Sum_probs=127.7
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchH-HHHHHHHHhcCC
Q 047571 418 TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISW-TAMIDSCIENGR 494 (681)
Q Consensus 418 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~li~~~~~~~~ 494 (681)
.+-.+|.+.|-+.+|.+-++...+. .|-+.||-.|-..|.+..++..|+.++.+-.+ |-.+|| .-+.+.+...++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4445555566666665555554443 34444555555556666666666655555443 322332 334444555555
Q ss_pred hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhh
Q 047571 495 LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDA 574 (681)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 574 (681)
.++|.++|+...+.. ..+......+...|-..++.+.|..+++.+++.|+
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~----------------------------- 355 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA----------------------------- 355 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-----------------------------
Confidence 555555555555432 23333344444444444555555555555555443
Q ss_pred CCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChh
Q 047571 575 VPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEE 652 (681)
Q Consensus 575 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 652 (681)
.+...|+.+.-+|...+++|-++.-|++....--.|+ ...|..+.......||+..|.+.|+..... .....+
T Consensus 356 ---~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~e 430 (478)
T KOG1129|consen 356 ---QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGE 430 (478)
T ss_pred ---CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHH
Confidence 2344566666666677777777777777766543343 345667777777777888887777766542 222356
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 653 HYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 653 ~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
.++.|.-.-.+.|++++|+.+++.-
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHh
Confidence 7777777777778888887777643
No 77
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.3e-05 Score=81.34 Aligned_cols=277 Identities=14% Similarity=0.097 Sum_probs=164.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC--cCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhC-----------
Q 047571 377 NEILWTALMSGYVSNGRLEQALRSIAWMQQEG--FRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQ----------- 443 (681)
Q Consensus 377 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------- 443 (681)
|+..-+..+.++...+-..+-+++++++.-.. +.-+...-+.++-...+ -+..++.++.+.+....
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 55566777888888888888888888876432 11111222223222222 22233333333332221
Q ss_pred ------------CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCC
Q 047571 444 ------------FLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHR 511 (681)
Q Consensus 444 ------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 511 (681)
+..+....+.|+. ..+..++|.++-++..+| ..|+.+..+-.+.|.+.+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------ 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------ 1130 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------
Confidence 1122222222222 234455555555555443 46888999999999999998877544
Q ss_pred CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHH
Q 047571 512 PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYG 591 (681)
Q Consensus 512 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 591 (681)
-|...|..+++.+.+.|.+++-.+++...+++.-+|... ..|+-+|++.+++.+.++++.. ||..-...+.+-|.
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~g---pN~A~i~~vGdrcf 1205 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAG---PNVANIQQVGDRCF 1205 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcC---CCchhHHHHhHHHh
Confidence 356689999999999999999999999988876665544 5789999999999888877643 44444444444455
Q ss_pred cCCChHHHHHHHHHHHh-------------------CC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCh
Q 047571 592 YNDLCQEALSLFDKMRN-------------------GG-FTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALE 651 (681)
Q Consensus 592 ~~~~~~~a~~~~~~m~~-------------------~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 651 (681)
..|.++.|.-+|..... .. -..+..||...-.+|...+.+.-|.- . .+.+-...
T Consensus 1206 ~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQi-----C-GL~iivha 1279 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQI-----C-GLNIIVHA 1279 (1666)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHh-----c-CceEEEeh
Confidence 55554444433332110 00 01234455555555555544443321 1 11233335
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 652 EHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 652 ~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
.-...|++-|...|-++|-+.+++.
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 5677888889999999998888774
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.07 E-value=3.5e-08 Score=103.48 Aligned_cols=178 Identities=13% Similarity=0.103 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHHHHcCcCCCHH-HHHHHHHHhhc---------cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047571 393 RLEQALRSIAWMQQEGFRPDVV-TVATVIPVCSQ---------LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG 462 (681)
Q Consensus 393 ~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (681)
..++|...|++..+. .|+.. .|..+..++.. .++.++|...++++.+.+ +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 355666777666654 34332 23333222221 123455556555555543 334444555555555556
Q ss_pred ChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHHHHHHHH
Q 047571 463 VLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKLGKEIHG 538 (681)
Q Consensus 463 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 538 (681)
++++|...|++..+ | +...+..+..++...|++++|+..+++..+.. |+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 66666666655443 2 22344555555555666666666666555532 2211 11222223333445555555555
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571 539 QVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAV 575 (681)
Q Consensus 539 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 575 (681)
++.+...+.++..+..+..+|...|+.++|...+.++
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5443321222333344444444444444444444443
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.07 E-value=2e-08 Score=99.99 Aligned_cols=190 Identities=16% Similarity=0.221 Sum_probs=92.7
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC-------C---C-cchHHHHHHHHHhcCChhHHHHHHHHhHh-----CCC-CCCHH
Q 047571 453 SLMIMYSKCGVLDYSLKLFDEMEV-------R---N-VISWTAMIDSCIENGRLDDALGVFRSMQL-----SKH-RPDSV 515 (681)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~-------~---~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~-~p~~~ 515 (681)
.+...|...+++++|..+|+++.. + . ..+++.|..+|.+.|++++|...+++..+ .|. .|...
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 344555566666666666655432 1 1 13555566666777776666665555432 111 12222
Q ss_pred -HHHHHHHHhccccchHHHHHHHHHHHHc---CCC----CChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--------CC
Q 047571 516 -AMARMLSVSGQLKALKLGKEIHGQVLKK---DFA----SVPFVAAENIKMYGMCGFLECAKLVFDAVPV--------KG 579 (681)
Q Consensus 516 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~ 579 (681)
.++.+...|...+.+++|..++....+. -+. ..+.+++.+...|.+.|++++|+++++++.. .+
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 2344445566666777777666654431 111 1134555555555555555555555554433 00
Q ss_pred ---hhhHHHHHHHHHcCCChHHHHHHHHHHH----hCCC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571 580 ---SITWTAIIEAYGYNDLCQEALSLFDKMR----NGGF-TPN-HFTFKVLLSICNQAGFADEACRIFNVMS 642 (681)
Q Consensus 580 ---~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (681)
...++.|...|.+.+++.+|.++|.+.. .-|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2234445555555555555555554422 1111 111 2345555555555555555555555443
No 80
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=3.8e-05 Score=79.77 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=80.6
Q ss_pred HhHHHHHHHhcCChHHHHHHHhccCCC-ChhhHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047571 248 RTSLIDMYFKCGKIKLARRVFDETGDR-DIVVWG-----SMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVI 321 (681)
Q Consensus 248 ~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 321 (681)
+..+.+.|.+.|-...|++.+..+.+- -.+..+ ..+-.|.-.-.++++++.++.|...+++.|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344566777888888888877765541 111111 12334555567888999999999888888877666555555
Q ss_pred hhhhhhcccchhhhhhhhc----------cCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhc
Q 047571 322 GEAWARKLGQEVHAYVLKN----------ERYSEELFVRSSLVDMYCKCRDMNSAWRVFYET 373 (681)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 373 (681)
...=-.+...++|+..... -.+..|+.+.-..|.+.|+.|.+.+..++.++-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres 750 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES 750 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence 4443333333333333222 245677777788999999999999988887654
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.06 E-value=1.1e-05 Score=81.59 Aligned_cols=479 Identities=16% Similarity=0.032 Sum_probs=235.8
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH---HHhcCChhHH-------------------HH----HHHHHHHhC
Q 047571 84 RQNKLKEALVILDYMDQQGIPVNVTTFNALITA---CVRTRSLVEG-------------------RL----IHTHIRING 137 (681)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a-------------------~~----~~~~~~~~~ 137 (681)
..++...++.-+.....++-+.++.++..+... |...++.+++ .. .+.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 345556666666665555544444444444332 2223333333 21 222233334
Q ss_pred CCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCC---CCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHH
Q 047571 138 LENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSE---SVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFS 214 (681)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 214 (681)
+..++..|..|.-++..+|+++.+.+.|++...- ....|+.+-..+...| .-..|+.++++-....-.|+..+--
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag--~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAG--SDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhc--cchHHHHHHHhhcccccCCCcchHH
Confidence 5667777887877788888888888888765432 2233666666666666 6667777766644333235444433
Q ss_pred HHHH-Hhh-ccCchhhhHHHHHHHHHh--CC--CCCcHHHhHHHHHHHhc-----------CChHHHHHHHhccCCC---
Q 047571 215 CVIK-SFA-GASALMQGLKTHALLIKN--GF--VDYLILRTSLIDMYFKC-----------GKIKLARRVFDETGDR--- 274 (681)
Q Consensus 215 ~ll~-~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~--- 274 (681)
.++. .|. +.+.++++..+-...... +. ......|..+.-+|... ....++++.+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333 232 345555555555444441 11 11123333333333221 1123445555554332
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHH
Q 047571 275 DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLV 354 (681)
Q Consensus 275 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 354 (681)
|....-.+.--|+..++++.|.+...+..+-+-.-+...|..+...+...+++..|..+.+.....-| .|..
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~--~N~~------ 548 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG--DNHV------ 548 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh--hhhh------
Confidence 32222233334556667777777777766665555666666666666666666666666655544311 1111
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHH
Q 047571 355 DMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKE 434 (681)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 434 (681)
....-++.-..-++.++++.....+..-= -+.... ...++-....+
T Consensus 549 -------------------------l~~~~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~~~-------q~~~~~g~~~~ 594 (799)
T KOG4162|consen 549 -------------------------LMDGKIHIELTFNDREEALDTCIHKLALW--EAEYGV-------QQTLDEGKLLR 594 (799)
T ss_pred -------------------------hchhhhhhhhhcccHHHHHHHHHHHHHHH--HhhhhH-------hhhhhhhhhhh
Confidence 11111112222344444444444333210 000000 00000000111
Q ss_pred HHHHHHH--hCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhhCCCCCcc------hHHHHHHHHHhcCChhHHHHHHH
Q 047571 435 IHAYAVK--NQFLPNVSIITSLMIMYSKCG---VLDYSLKLFDEMEVRNVI------SWTAMIDSCIENGRLDDALGVFR 503 (681)
Q Consensus 435 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~A~~~~~ 503 (681)
....+.- ........++..+.......+ ..+.....+.....|+.. .|......+.+.+..++|...+.
T Consensus 595 lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~ 674 (799)
T KOG4162|consen 595 LKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLL 674 (799)
T ss_pred hhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 1111100 000111222222221111100 011111111111112211 22233333444444444444443
Q ss_pred HhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-h
Q 047571 504 SMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-S 580 (681)
Q Consensus 504 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~ 580 (681)
+... .. ...+..|......+...|++++|.+.|..... |+ +
T Consensus 675 Ea~~-----------------------------------~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 675 EASK-----------------------------------ID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred HHHh-----------------------------------cc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 3332 11 22355556666677777888888888876655 44 6
Q ss_pred hhHHHHHHHHHcCCChHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 581 ITWTAIIEAYGYNDLCQEALS--LFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.+..++...+.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.++|.+.|+...+
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 778888888888888777777 889998865 55889999999999999999999999987754
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=9.9e-06 Score=82.02 Aligned_cols=84 Identities=13% Similarity=0.103 Sum_probs=53.7
Q ss_pred ChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 047571 310 NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYV 389 (681)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 389 (681)
|...|..-..-+...|+.+.|..+|...... -++++..|-.|+.++|-++-++- .|..+.-.+.+.|-
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~----------fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDY----------FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYE 978 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhh----------hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhh
Confidence 3344444555555566666666666655544 56677777778877777776553 24445556777777
Q ss_pred hCCChHHHHHHHHHHH
Q 047571 390 SNGRLEQALRSIAWMQ 405 (681)
Q Consensus 390 ~~~~~~~A~~~~~~m~ 405 (681)
..|++.+|...|.+.+
T Consensus 979 n~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 7788888777776654
No 83
>PRK12370 invasion protein regulator; Provisional
Probab=99.05 E-value=4.1e-08 Score=102.90 Aligned_cols=237 Identities=10% Similarity=-0.039 Sum_probs=134.6
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH---------hcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCCh
Q 047571 428 ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYS---------KCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRL 495 (681)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~ 495 (681)
+.++|..++++..+.. +.+...+..+..+|. ..+++++|...+++..+ | +...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3566777777766543 223334444444332 22346677777776664 2 344566666667777777
Q ss_pred hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571 496 DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAV 575 (681)
Q Consensus 496 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 575 (681)
++|+..|++..+.+ +.+...+..+..++...|++++|...++...+.+.. ++..+..++..+...|++++|...+++.
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 77777777777653 223445566666677777777777777777765432 2222233344455567777777777665
Q ss_pred CC---CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC
Q 047571 576 PV---KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH-FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL 650 (681)
Q Consensus 576 ~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 650 (681)
.. |+ ...+..+..++...|+.++|...++++... .|+. .....+...+...| +.|...++.+.+.....+.
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 42 32 334556666677777777777777776553 4433 33444445556666 3666666666554343443
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHH
Q 047571 651 EEHYLIMIDILTRFGRIEEAHRF 673 (681)
Q Consensus 651 ~~~~~~l~~~~~~~g~~~~A~~~ 673 (681)
...+..+ .|.-.|+-+.|..+
T Consensus 509 ~~~~~~~--~~~~~g~~~~~~~~ 529 (553)
T PRK12370 509 NPGLLPL--VLVAHGEAIAEKMW 529 (553)
T ss_pred CchHHHH--HHHHHhhhHHHHHH
Confidence 2223333 33334555555544
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=4e-05 Score=77.59 Aligned_cols=397 Identities=11% Similarity=0.072 Sum_probs=219.6
Q ss_pred CCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 047571 240 GFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR---DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTI 316 (681)
Q Consensus 240 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 316 (681)
.+.-|..+|..|.-++.+.|+++.+-+.|++...- ....|+.+...+...|.-..|..+++.-....-.|+..+...
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34556677777777778888888888888775542 445677777788888887788887776554433343333222
Q ss_pred H-HHHHhh-hhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh----
Q 047571 317 L-LPVIGE-AWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVS---- 390 (681)
Q Consensus 317 l-l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~---- 390 (681)
+ -..|.. .+..+++...-..+....+. ..+.+ ....|-.+.-+|..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~---------------~~~~l-------------~~~~~l~lGi~y~~~A~~ 449 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGG---------------QRSHL-------------KPRGYLFLGIAYGFQARQ 449 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhh---------------hhhhh-------------hhhHHHHHHHHHHhHhhc
Confidence 2 222221 23333333333333321000 00000 11222222222211
Q ss_pred -------CCChHHHHHHHHHHHHcC-cCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047571 391 -------NGRLEQALRSIAWMQQEG-FRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG 462 (681)
Q Consensus 391 -------~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (681)
.....++++.+++..+.+ -.|+...|..+ -++..++++.|.+..++..+.+-..+...|..+.-.+...+
T Consensus 450 a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 112345556666655443 33433333332 23445567777777777776655666666766666666777
Q ss_pred ChHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHhHh---------------------CCC-----CC-
Q 047571 463 VLDYSLKLFDEMEV--RN-VISWTAMIDSCIENGRLDDALGVFRSMQL---------------------SKH-----RP- 512 (681)
Q Consensus 463 ~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~---------------------~g~-----~p- 512 (681)
++.+|+.+.+...+ ++ -.....-+..-..-++.++++.....+.. .|+ .|
T Consensus 528 r~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 77777776655432 11 10000001111112333333333222211 000 00
Q ss_pred -CHHHHHHHHHHhcccc---chHHHHHHHHHHHHcCCCCCh--------hHHHHHHHHHHhcCCHHHHHHHhhhCCCCC-
Q 047571 513 -DSVAMARMLSVSGQLK---ALKLGKEIHGQVLKKDFASVP--------FVAAENIKMYGMCGFLECAKLVFDAVPVKG- 579 (681)
Q Consensus 513 -~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~- 579 (681)
...++..+..-....+ ..+.. +.+....|.+ ..|......+.+.++.++|...+.+...-+
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~ 681 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP 681 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch
Confidence 1112222211111000 00000 1111112222 234455677788888899988877776633
Q ss_pred --hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHH--HHHHhhhcCCCCC-ChhH
Q 047571 580 --SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACR--IFNVMSRGYKIEA-LEEH 653 (681)
Q Consensus 580 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~-~~~~ 653 (681)
...|......+...|+.++|.+.|..... +.| ++.+...+...+.+.|+..-|.. ++..+.+ +.| +.+.
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr---~dp~n~ea 756 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR---LDPLNHEA 756 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh---hCCCCHHH
Confidence 44566666777889999999999999888 456 56788899999999998888877 8887765 344 4789
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 654 YLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 654 ~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
|..++.++-+.|+.++|.+.|+..
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH
Confidence 999999999999999999988753
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.96 E-value=1.3e-07 Score=94.31 Aligned_cols=202 Identities=17% Similarity=0.108 Sum_probs=127.1
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHhhC-----C-CCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHh-----CC-
Q 047571 72 PRAIYKDIQRFARQNKLKEALVILDYMDQQ-----G-IPVNVT-TFNALITACVRTRSLVEGRLIHTHIRIN-----GL- 138 (681)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~- 138 (681)
..+...+...|..+|+++.|+.++++..+. | ..|... ..+.+...|...+++.+|..+|+.+... |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666899999999999999999998654 2 123333 3445777888899999999999998754 21
Q ss_pred CC-chhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCC-CCChh-hHHH
Q 047571 139 EN-NGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGV-QLNVY-TFSC 215 (681)
Q Consensus 139 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~-~~~~ 215 (681)
.| -..+++.|..+|.+.|++++|...++ .|++++++ ..|. .|... -++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e--------------------------~Al~I~~~--~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCE--------------------------RALEIYEK--LLGASHPEVAAQLSE 330 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHH--------------------------HHHHHHHH--hhccChHHHHHHHHH
Confidence 22 23567777788999999999988665 45666665 2222 22222 3455
Q ss_pred HHHHhhccCchhhhHHHHHHHHHhC---CCCC----cHHHhHHHHHHHhcCChHHHHHHHhccCCC-----------Chh
Q 047571 216 VIKSFAGASALMQGLKTHALLIKNG---FVDY----LILRTSLIDMYFKCGKIKLARRVFDETGDR-----------DIV 277 (681)
Q Consensus 216 ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~~~ 277 (681)
+...++..+++++|..+++...+.- +.++ ..+++.|...|...|++++|.++++++... ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 6667777888888888777554321 1111 245666666666666666666666554321 112
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHH
Q 047571 278 VWGSMIAGFAHNRLRWEALDCARW 301 (681)
Q Consensus 278 ~~~~li~~~~~~~~~~~a~~~~~~ 301 (681)
.++.|...|.+.+++.+|.++|.+
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHH
Confidence 344455555555555555555544
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=3.3e-06 Score=75.03 Aligned_cols=320 Identities=12% Similarity=0.007 Sum_probs=213.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHH-HHHHHhh
Q 047571 75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRT-KLVKMYT 153 (681)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 153 (681)
+...+..+.+..++.+|++++....++. +.+......+..+|....++..|-..++++-.. .|...-|. .-.+.+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5667888889999999999999998875 347788888889999999999999999998755 34443332 2345566
Q ss_pred cCCChhHHHHhhhhcCCC-CCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHH
Q 047571 154 SCGSFEDAEKVFDESSSE-SVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKT 232 (681)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 232 (681)
+.+.+.+|+++...|... +...-..-+.+..+...+++..+..+.++....| +..+.+.......+.|+.+.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 778999999999888763 3333334455555555558888888888754322 333333334445689999999999
Q ss_pred HHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC-----------------Ch---------------hhHH
Q 047571 233 HALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR-----------------DI---------------VVWG 280 (681)
Q Consensus 233 ~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------------~~---------------~~~~ 280 (681)
|+...+-+--.....|+.-+ ++.+.|+.+.|++...++.++ |+ ..+|
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 99988855444456777554 455778899999888776431 21 1233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHh
Q 047571 281 SMIAGFAHNRLRWEALDCARWMIRE-GIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCK 359 (681)
Q Consensus 281 ~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (681)
.-...+.+.|+++.|.+-+-+|.-+ ....|++|...+.-.- ..+++....+-+..+..... -...++..++-.||+
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP--fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP--FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC--CChHHHHHHHHHHhh
Confidence 3334456788999998888887533 3445777776543221 22445555555666655523 334577888889999
Q ss_pred cCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 047571 360 CRDMNSAWRVFYETEER-----NEILWTALMSGYVSNGRLEQALRSIAWM 404 (681)
Q Consensus 360 ~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m 404 (681)
+.-++.|-+++.+-... +...|+.|=..-...-..++|.+-++.+
T Consensus 323 Neyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999888775543 3444443322222334566666555544
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.91 E-value=2.4e-05 Score=81.17 Aligned_cols=547 Identities=12% Similarity=0.028 Sum_probs=272.7
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhh
Q 047571 88 LKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDE 167 (681)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 167 (681)
...|+..|-+..+..+. -...|..|...|+...+...|.+.|+...+.+ ..+..........|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 66666666666555321 34567777777777777777888888777665 55666667777778887788777777432
Q ss_pred cCCCCC---ccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCC
Q 047571 168 SSSESV---YPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDY 244 (681)
Q Consensus 168 ~~~~~~---~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 244 (681)
..+... ..+|..-++...-..++..+++.-|+...+.. +-|...|..+..+|...|++..|.++|....... |+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH
Confidence 222111 12333333322222226666666666544322 1234466666666777777777777666554332 22
Q ss_pred c-HHHhHHHHHHHhcCChHHHHHHHhccCCC---------C-hhhHHHHHHHHHhcCChHHHHHHHHHHH-------HcC
Q 047571 245 L-ILRTSLIDMYFKCGKIKLARRVFDETGDR---------D-IVVWGSMIAGFAHNRLRWEALDCARWMI-------REG 306 (681)
Q Consensus 245 ~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~-~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~g 306 (681)
. ...--..-..+..|.+.+|...+..+... + ..++-.+...+.-.|-...|.+++++-. ...
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 1 11111222334556666666655543320 0 1111111111222222222222222111 111
Q ss_pred --------------------CCCC---hhhHHHHHHHHhhhhhhcccc---hhhhhhhhccCCCCCchHHhHHHHHHHh-
Q 047571 307 --------------------IYPN---SVVLTILLPVIGEAWARKLGQ---EVHAYVLKNERYSEELFVRSSLVDMYCK- 359 (681)
Q Consensus 307 --------------------~~p~---~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 359 (681)
+.|| ......+..-+...+....-. --.+....+..+..+...|..+...|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 1122 211111111111122111100 0000000111222234444444444433
Q ss_pred ---c----CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCCh
Q 047571 360 ---C----RDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKAL 429 (681)
Q Consensus 360 ---~----~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 429 (681)
. .+...|...+....+ .+..+||.|... ...|.+.-|..-|-+-... -+-...+|..+--.+.+..++
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccH
Confidence 1 122345555544332 356677776654 4445565555555443332 123445566666667788889
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--------CCcchHHHHHHHHHhcCChhHHHHH
Q 047571 430 NHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--------RNVISWTAMIDSCIENGRLDDALGV 501 (681)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~ 501 (681)
+.|...|...+... +.+...|-.........|+.-++..+|..-.. ++..-|-........+|+.++-+..
T Consensus 867 E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t 945 (1238)
T KOG1127|consen 867 EHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINT 945 (1238)
T ss_pred HHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHH
Confidence 99999888877654 33444554444445567777777777765221 3333333333444556665554444
Q ss_pred HHHhHh---------CCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHH---c--CCCCChhHHHHHHHHHHhcCCHHH
Q 047571 502 FRSMQL---------SKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLK---K--DFASVPFVAAENIKMYGMCGFLEC 567 (681)
Q Consensus 502 ~~~m~~---------~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~--~~~~~~~~~~~l~~~~~~~g~~~~ 567 (681)
.+++-. .|.+.+...|..........+.+..+.+...+.+. . ...-.+..-..+.+.++..|.++.
T Consensus 946 ~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~ 1025 (1238)
T KOG1127|consen 946 ARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFES 1025 (1238)
T ss_pred hhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhh
Confidence 333321 13344455666666666666666666665554432 1 111222233445667777788887
Q ss_pred HHHHhhhCCC-CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 568 AKLVFDAVPV-KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGG-FTPN-HFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 568 a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
|..-+..... .+..+-..-+.. .-.|+++++++.|++...-- -.-+ ++....++......+.-+.|...+-+...
T Consensus 1026 A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1026 AKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 7776655443 222222111211 34678888888888887631 1112 24455566666777777888777666654
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.90 E-value=1.3e-06 Score=88.43 Aligned_cols=284 Identities=10% Similarity=0.017 Sum_probs=186.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC--C-hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhh------
Q 047571 354 VDMYCKCRDMNSAWRVFYETEER--N-EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCS------ 424 (681)
Q Consensus 354 ~~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~------ 424 (681)
...+...|++++|++.+...... | ..........+.+.|+.++|..++..+.+.+ |+...|...+..+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 44556778888888888775543 3 3456667788888899999999999988874 66666655555443
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhhCCCCCc-chHHHHHHHHHhcCChhHHHHHH
Q 047571 425 QLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVL-DYSLKLFDEMEVRNV-ISWTAMIDSCIENGRLDDALGVF 502 (681)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~ 502 (681)
...+.+...++++++...- |.......+.-.+.....+ ..+..++..+....+ .+|+.+-..|....+.+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 1224566677777776543 3332222222222221122 223344444444444 34555555555455555555555
Q ss_pred HHhHhC----C----------CCCCHH--HHHHHHHHhccccchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCH
Q 047571 503 RSMQLS----K----------HRPDSV--AMARMLSVSGQLKALKLGKEIHGQVLKKDFASV-PFVAAENIKMYGMCGFL 565 (681)
Q Consensus 503 ~~m~~~----g----------~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 565 (681)
...... | -.|+.. ++..+...|...|++++|.++.+..++.. |+ +..|..-.+.|-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCH
Confidence 554432 1 123332 44555667788899999999999988864 44 78888889999999999
Q ss_pred HHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--H----HHH--HHHHHHHhccCCHHHH
Q 047571 566 ECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN--H----FTF--KVLLSICNQAGFADEA 634 (681)
Q Consensus 566 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~----~~~--~~l~~~~~~~g~~~~A 634 (681)
++|.+.++.... .|-..-+-.+..+.+.|++++|.+++......+..|- . ..| .-...+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999998877 3455556677788899999999999998887765442 1 122 3456788999999999
Q ss_pred HHHHHHhhh
Q 047571 635 CRIFNVMSR 643 (681)
Q Consensus 635 ~~~~~~~~~ 643 (681)
+..|..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 888877654
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.5e-05 Score=70.29 Aligned_cols=299 Identities=11% Similarity=0.010 Sum_probs=167.9
Q ss_pred CCCCChhhHHHHHHHhh--ccCchhhhHHHHHHHHHh-CCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHH
Q 047571 205 GVQLNVYTFSCVIKSFA--GASALMQGLKTHALLIKN-GFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGS 281 (681)
Q Consensus 205 g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 281 (681)
.+.|...+...-+.+++ -.++-..+.+++-.+... -++.++.....+...+...|+.++|...|+....-|..+...
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence 33444444444444333 223333344444333332 244556667777777777777777777777655433322221
Q ss_pred H---HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHH
Q 047571 282 M---IAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYC 358 (681)
Q Consensus 282 l---i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (681)
| .-.+.+.|+.+....+...+.... .-....|-.-...+-...++..|..+-+..++. -+.+...+-.--..+.
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLI 345 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHH
Confidence 1 222345666666666666555421 011111111111222233344444444333332 1222222222234556
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHH-HHhh-ccCChhHHH
Q 047571 359 KCRDMNSAWRVFYETEE--R-NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVI-PVCS-QLKALNHGK 433 (681)
Q Consensus 359 ~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~ 433 (681)
..|+.++|.-.|+.... | +...|.-|+++|...|++.+|..+-++.... .+-+..+...+- ..|. ...--++|.
T Consensus 346 ~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 67788888777776553 2 6778888888888888888887766654432 223444444331 2222 223346777
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 047571 434 EIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIENGRLDDALGVFRSMQLS 508 (681)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 508 (681)
.+++...+.. +.-....+.+...+...|+.++++.+++.... +|....+.|.+.+...+.+++|++.|......
T Consensus 425 kf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7777665543 23445667777888888888888888887654 78888888888888888888888888877764
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.88 E-value=3.7e-05 Score=79.89 Aligned_cols=546 Identities=10% Similarity=-0.049 Sum_probs=286.1
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCC---CCCccHHHHHHHHHHcCCcChhhHHHHH
Q 047571 122 SLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSS---ESVYPWNALLRGAVIAGKKRYRGVLFNY 198 (681)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~~a~~~~ 198 (681)
+...+...|=+..+.. ..-...|..|...|+...+...|.+.|+..-+ .+..++......|+... +++.|..+.
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~--~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES--TWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc--cHHHHHHHH
Confidence 3555555555544443 33345788899999988899999999987654 45556888889999999 999998884
Q ss_pred HHHHHcCCCCChhhHHH--HHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCCh
Q 047571 199 MKMRELGVQLNVYTFSC--VIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDI 276 (681)
Q Consensus 199 ~~m~~~g~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 276 (681)
-..-+.. +.-...++. .--.+...++...+..-|+...+.. +.|...|..+..+|.+.|++..|.++|.+...-++
T Consensus 550 l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 550 LRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 3322221 111112232 3334667888888888888777654 45778999999999999999999999987665333
Q ss_pred h-hHHH--HHHHHHhcCChHHHHHHHHHHHHc------CCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhcc------
Q 047571 277 V-VWGS--MIAGFAHNRLRWEALDCARWMIRE------GIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNE------ 341 (681)
Q Consensus 277 ~-~~~~--li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 341 (681)
. .|.. ....-+..|.+.+|+..+...... +..--..++..+...+...|-...+..+++..++.-
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2 2222 223346678888888888766542 112223344444444444444344433333322210
Q ss_pred CCCCCchHHhHHHHH-------------------HH----hcCCH---H---HHHHHHhhcCC--CChhhHHHHHHHHHh
Q 047571 342 RYSEELFVRSSLVDM-------------------YC----KCRDM---N---SAWRVFYETEE--RNEILWTALMSGYVS 390 (681)
Q Consensus 342 ~~~~~~~~~~~l~~~-------------------~~----~~~~~---~---~a~~~~~~~~~--~~~~~~~~li~~~~~ 390 (681)
....+...|-.+-++ +. ..+.. + -+.+.+-.-.. .+..+|..++..|.+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 111111111111111 11 11111 0 00000000000 023334444433333
Q ss_pred ----CC----ChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047571 391 ----NG----RLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG 462 (681)
Q Consensus 391 ----~~----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (681)
.| +...|+..+.+-... ..+...+...+......|++.-+...|-.-.... +....+|..+.-.+.+..
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence 11 122444444444332 2333333344444455556666555554433332 344556666666677777
Q ss_pred ChHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHhH--h--CCCCCCHHHHHHHHHHhccccchHHHHH
Q 047571 463 VLDYSLKLFDEMEVR---NVISWTAMIDSCIENGRLDDALGVFRSMQ--L--SKHRPDSVAMARMLSVSGQLKALKLGKE 535 (681)
Q Consensus 463 ~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~--~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 535 (681)
+++.|...|.....- |...|-.........|+.-++..+|..-- . .|--++..-+..........|+.+.-+.
T Consensus 865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 888888888777652 34455554444555677777777776521 1 1223332222222222233343333222
Q ss_pred ----------HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CChhhHHH----HHHHHHcCCCh
Q 047571 536 ----------IHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KGSITWTA----IIEAYGYNDLC 596 (681)
Q Consensus 536 ----------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~----l~~~~~~~~~~ 596 (681)
.++.... +.+.....|..........+.++.|..+..+... -+...||. +.+.++..|.+
T Consensus 945 t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgef 1023 (1238)
T KOG1127|consen 945 TARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEF 1023 (1238)
T ss_pred HhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcch
Confidence 2222222 3334455666666666666666666655544322 33444553 33445556777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHH
Q 047571 597 QEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFRE 675 (681)
Q Consensus 597 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 675 (681)
+.|...+..... ..+.....+-+. ..-.|+++++.+.|++...-.+-..+ ......+.-+...+|..+.|+..+-
T Consensus 1024 e~A~~a~~~~~~---evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLf 1099 (1238)
T KOG1127|consen 1024 ESAKKASWKEWM---EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLF 1099 (1238)
T ss_pred hhHhhhhcccch---hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHH
Confidence 655443332111 112112111111 24578899999999988664444444 3445556666677888888888765
Q ss_pred hccCC
Q 047571 676 MSSSL 680 (681)
Q Consensus 676 ~~~~~ 680 (681)
+...+
T Consensus 1100 e~~~l 1104 (1238)
T KOG1127|consen 1100 EVKSL 1104 (1238)
T ss_pred HHHHh
Confidence 55444
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.83 E-value=2.7e-06 Score=81.44 Aligned_cols=116 Identities=11% Similarity=0.006 Sum_probs=65.0
Q ss_pred CChHHHHHHHHHHHHcC-cCCC--HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 047571 392 GRLEQALRSIAWMQQEG-FRPD--VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL 468 (681)
Q Consensus 392 ~~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (681)
+..+.++..+.++.... ..|+ ...|..+-..+...|+.+.|...|+...+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555432 1121 2234444445566666666666666666543 334556666666666666666666
Q ss_pred HHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 047571 469 KLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLS 508 (681)
Q Consensus 469 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 508 (681)
..|++..+ | +...|..+..++...|++++|++.+++..+.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66666543 2 2345555556666666666666666666653
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.83 E-value=7.8e-07 Score=85.12 Aligned_cols=234 Identities=12% Similarity=0.001 Sum_probs=159.4
Q ss_pred ccCChhHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHH
Q 047571 425 QLKALNHGKEIHAYAVKNQ-FLPN--VSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDA 498 (681)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A 498 (681)
..+..+.+..-+.++.... ..|+ ...|..+...|.+.|+.++|...|++..+ | +...|+.+...+...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3345666777777766532 2222 34577778889999999999999998875 3 557899999999999999999
Q ss_pred HHHHHHhHhCCCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 047571 499 LGVFRSMQLSKHRPD-SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV 577 (681)
Q Consensus 499 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 577 (681)
...|++..+. .|+ ..++..+..++...|++++|.+.++...+.+ |+..........+...++.++|...+++...
T Consensus 118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9999999875 454 5577777888888999999999999998764 3322222223345567889999999965443
Q ss_pred -CChhhHHHHHHHHHcCCChHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC
Q 047571 578 -KGSITWTAIIEAYGYNDLCQEALSLFDKMRNG---GF--TP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL 650 (681)
Q Consensus 578 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 650 (681)
.+...|.. .......|+...+ +.++.+.+. .. .| ....|..+...+.+.|++++|+..|++..+. . .|+
T Consensus 194 ~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~-~-~~~ 269 (296)
T PRK11189 194 KLDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN-N-VYN 269 (296)
T ss_pred hCCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C-Cch
Confidence 22223331 2223335655544 344555432 11 12 3467889999999999999999999988863 3 334
Q ss_pred -hhHHHHHHHHHhhcCC
Q 047571 651 -EEHYLIMIDILTRFGR 666 (681)
Q Consensus 651 -~~~~~~l~~~~~~~g~ 666 (681)
.++-..++......++
T Consensus 270 ~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 270 FVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 5555555555544443
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=2.8e-07 Score=86.65 Aligned_cols=126 Identities=15% Similarity=0.094 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhh---HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSIT---WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLS 623 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 623 (681)
.......+.+|.+.++++.|.+.++.+.+ .|... ..+.+..+...+.+.+|..+|+++.+. +.+++.+.+.+..
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~ 209 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHH
Confidence 34444455555555555555555555554 22111 111222222233566666666666554 3556666666666
Q ss_pred HHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCH-HHHHHHHHhc
Q 047571 624 ICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRI-EEAHRFREMS 677 (681)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 677 (681)
++...|++++|.+++++..+. .+-+..+...++-+..-.|+. +.+.++++++
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 666666666666666655432 111244555555555555555 4455555554
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.75 E-value=2.7e-05 Score=77.70 Aligned_cols=253 Identities=11% Similarity=-0.082 Sum_probs=131.5
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCChhHHHH---HHHHHHhcCChHHHHHHHhhCCC--CCc-chHHHHHHHHHhcCChh
Q 047571 423 CSQLKALNHGKEIHAYAVKNQFLPNVSIITS---LMIMYSKCGVLDYSLKLFDEMEV--RNV-ISWTAMIDSCIENGRLD 496 (681)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~ 496 (681)
+...|+++.|.++++...+.. +.+...+.. +.......+..+.+.+.++.... |+. .....+...+...|+++
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence 344566666666666655542 222222221 11111223444555555544222 111 22233444566677777
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCC-CC--hhHHHHHHHHHHhcCCHHHHHHHhh
Q 047571 497 DALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA-SV--PFVAAENIKMYGMCGFLECAKLVFD 573 (681)
Q Consensus 497 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~g~~~~a~~~~~ 573 (681)
+|...+++..+.. +.+...+..+...+...|++++|...++...+.... ++ ...+..+...+...|++++|..+++
T Consensus 132 ~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 132 RAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777776653 333445556666666777777777777766654221 22 1234456777777888888888887
Q ss_pred hCCC--CChhhH----H--HHHHHHHcCCChHHHHHH--H-HHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047571 574 AVPV--KGSITW----T--AIIEAYGYNDLCQEALSL--F-DKMRNGGF-TPNHFTFKVLLSICNQAGFADEACRIFNVM 641 (681)
Q Consensus 574 ~~~~--~~~~~~----~--~l~~~~~~~~~~~~a~~~--~-~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (681)
+... +....+ + .++.-+...|..+.+.++ + ..-..... ............++...|+.++|.+.++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l 290 (355)
T cd05804 211 THIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAAL 290 (355)
T ss_pred HHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 7643 211111 1 222333334433333332 1 11111100 112223335677788889999999999887
Q ss_pred hhcCCC------C-CChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 642 SRGYKI------E-ALEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 642 ~~~~~~------~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
.....- . ..........-++.+.|+.++|.+.+...
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 653111 0 01233333344566889999999888754
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.71 E-value=7.2e-06 Score=70.56 Aligned_cols=187 Identities=10% Similarity=0.030 Sum_probs=117.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 047571 380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYS 459 (681)
Q Consensus 380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (681)
+...|.-+|...|+...|..-+++..+.. +-+..++..+...|.+.|+.+.|.+-|+...+.. +-+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34456667777888888888777777752 2234456666667777777777777777777654 345566667777777
Q ss_pred hcCChHHHHHHHhhCCC-CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHH
Q 047571 460 KCGVLDYSLKLFDEMEV-RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGK 534 (681)
Q Consensus 460 ~~g~~~~a~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 534 (681)
..|++++|...|++... |+ ..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777776654 32 3466667777777777777777777776653 222334555555566666666666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 047571 535 EIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKL 570 (681)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 570 (681)
.+++.....+. ++....-..|+.-...|+.+.+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence 66666655543 454444444444444444444433
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.69 E-value=2.5e-05 Score=77.98 Aligned_cols=254 Identities=8% Similarity=-0.012 Sum_probs=129.0
Q ss_pred HHHhCCChHHHHHHHHHHHHcCcCCCHHHHHH---HHHHhhccCChhHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 047571 387 GYVSNGRLEQALRSIAWMQQEGFRPDVVTVAT---VIPVCSQLKALNHGKEIHAYAVKNQFLPN-VSIITSLMIMYSKCG 462 (681)
Q Consensus 387 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 462 (681)
.+...|++++|.+.+++..+.. +.|...+.. ........+....+.+.+.. .....|+ ......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 3455667777777776666542 112222221 11111123334444444333 1111222 223334445666677
Q ss_pred ChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCH--HHHHHHHHHhccccchHHHHHH
Q 047571 463 VLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKH-RPDS--VAMARMLSVSGQLKALKLGKEI 536 (681)
Q Consensus 463 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~~~~~~a~~~ 536 (681)
++++|...+++..+ | +...+..+...+...|++++|...+++.....- .|+. ..+..+...+...|+.++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777766654 2 344556666667777777777777776655321 1222 2334555666667777777777
Q ss_pred HHHHHHcCC-CCChhHH-H--HHHHHHHhcCCHHHHHHH---hhhCCC--C-ChhhHH--HHHHHHHcCCChHHHHHHHH
Q 047571 537 HGQVLKKDF-ASVPFVA-A--ENIKMYGMCGFLECAKLV---FDAVPV--K-GSITWT--AIIEAYGYNDLCQEALSLFD 604 (681)
Q Consensus 537 ~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~a~~~---~~~~~~--~-~~~~~~--~l~~~~~~~~~~~~a~~~~~ 604 (681)
++....... .+..... + .++..+...|..+.+.+. ...... + ....+. ....++...|+.++|..+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 776643322 1111111 1 222333333322222221 111000 1 111222 45667778999999999999
Q ss_pred HHHhCCCC-------C-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 605 KMRNGGFT-------P-NHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 605 ~m~~~g~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.+...... . ..........++...|++++|.+.+.....
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88764322 1 122233344456788999999999987765
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=0.0022 Score=73.11 Aligned_cols=257 Identities=14% Similarity=0.025 Sum_probs=137.4
Q ss_pred HHHhCCChHHHHHHHHHHHHcCcCCCH----HHHHHHHHHhhccCChhHHHHHHHHHHHhCC---CC--ChhHHHHHHHH
Q 047571 387 GYVSNGRLEQALRSIAWMQQEGFRPDV----VTVATVIPVCSQLKALNHGKEIHAYAVKNQF---LP--NVSIITSLMIM 457 (681)
Q Consensus 387 ~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~ 457 (681)
.+...|+++.|...+++..+.-...+. ...+.+...+...|+++.|...+.......- .+ ...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344566666666666665442111111 1223333345556677766666666543211 11 11233444555
Q ss_pred HHhcCChHHHHHHHhhCCC-------CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCC--HHHHHHHHH
Q 047571 458 YSKCGVLDYSLKLFDEMEV-------RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSK--HRPD--SVAMARMLS 522 (681)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~ 522 (681)
+...|++++|...+++... ++ ...+..+...+...|++++|...+++..... ..+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 6666777777666655432 11 1123334445556677777777776654421 1111 223333444
Q ss_pred HhccccchHHHHHHHHHHHHcC--CCCChhH----HHHHHHHHHhcCCHHHHHHHhhhCCCCC---h----hhHHHHHHH
Q 047571 523 VSGQLKALKLGKEIHGQVLKKD--FASVPFV----AAENIKMYGMCGFLECAKLVFDAVPVKG---S----ITWTAIIEA 589 (681)
Q Consensus 523 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~----~~~~~l~~~ 589 (681)
.....|+.+.|...++...... ....... ....+..+...|+.+.|...+.....+. . ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 5556677777777776664421 1100000 0111234455678888888876655422 1 113456666
Q ss_pred HHcCCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 590 YGYNDLCQEALSLFDKMRNG----GFTPN-HFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 590 ~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+...|++++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.+..+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77788888888888877653 22222 34566667778888888888888887765
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=0.00036 Score=79.40 Aligned_cols=322 Identities=13% Similarity=0.044 Sum_probs=205.7
Q ss_pred HHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCc------CCCHH--HHHHHHHHhh
Q 047571 357 YCKCRDMNSAWRVFYETEE----RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGF------RPDVV--TVATVIPVCS 424 (681)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------~p~~~--~~~~ll~~~~ 424 (681)
....|+++.+..++..+.. .+..........+...|++++|...+....+.-- .+... ....+-..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4455777777777766532 1333334445556678899999988887754311 11111 1112223456
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhCCC-------CC--cchHHHHHHHHHh
Q 047571 425 QLKALNHGKEIHAYAVKNQFLPNV----SIITSLMIMYSKCGVLDYSLKLFDEMEV-------RN--VISWTAMIDSCIE 491 (681)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~--~~~~~~li~~~~~ 491 (681)
..|+++.|...++.....-...+. ...+.+...+...|++++|...+++... +. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987763211121 2345566677889999999999887653 11 1244556677888
Q ss_pred cCChhHHHHHHHHhHhC----CCC--C-CHHHHHHHHHHhccccchHHHHHHHHHHHHc--CCCC--ChhHHHHHHHHHH
Q 047571 492 NGRLDDALGVFRSMQLS----KHR--P-DSVAMARMLSVSGQLKALKLGKEIHGQVLKK--DFAS--VPFVAAENIKMYG 560 (681)
Q Consensus 492 ~~~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~ 560 (681)
.|++++|...+++.... |.. + ....+..+...+...|+++.|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876552 221 1 1223444455566779999999998877653 1112 2344555677888
Q ss_pred hcCCHHHHHHHhhhCCC----CC-hhhH-----HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhc
Q 047571 561 MCGFLECAKLVFDAVPV----KG-SITW-----TAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH---FTFKVLLSICNQ 627 (681)
Q Consensus 561 ~~g~~~~a~~~~~~~~~----~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~ 627 (681)
..|+.++|.+.++.... .+ ...+ ...+..+...|+.+.|..++.+.......... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 89999999988877643 11 1111 11223445588999999998776543211111 124567778889
Q ss_pred cCCHHHHHHHHHHhhhc---CCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 628 AGFADEACRIFNVMSRG---YKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 628 ~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
.|++++|...+++.... .+..++ ..+...+..++.+.|+.++|.+.+.+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999987542 233332 4567778889999999999999887653
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=5e-08 Score=57.52 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=20.8
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 646 KIEALEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 646 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 556666666666666666666666666666654
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=0.00013 Score=65.31 Aligned_cols=235 Identities=11% Similarity=0.056 Sum_probs=112.3
Q ss_pred cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-CcCCCHHHHHHHHHHhhccCChhHHHHHHH
Q 047571 360 CRDMNSAWRVFYETEE-RNEILWTALMSGYVSNGRLEQALRSIAWMQQE-GFRPDVVTVATVIPVCSQLKALNHGKEIHA 437 (681)
Q Consensus 360 ~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 437 (681)
.+++..+..+++.... .+..+.+...-...+.|+++.|.+-|+...+. |..| ...|+..+.. .+.++.+.|.+...
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iS 202 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHIS 202 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHH
Confidence 4566666666666653 34444444444456777888888877776654 3443 3455544433 45577777888887
Q ss_pred HHHHhCCCCChhHH----HHHHHHHHhcCCh-HHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCC-CC
Q 047571 438 YAVKNQFLPNVSII----TSLMIMYSKCGVL-DYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSK-HR 511 (681)
Q Consensus 438 ~~~~~~~~~~~~~~----~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~ 511 (681)
++++.|++..+..- .-.++.- ..|+. ..+..-+ +..+|.-...+.+.|+++.|.+-+-+|--+. -.
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvr-svgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~e 274 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVR-SVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEE 274 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchh-cccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCccccc
Confidence 77777654222110 0000000 00000 0000000 0112222233445566666666666553221 23
Q ss_pred CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC-----ChhhHHHH
Q 047571 512 PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVK-----GSITWTAI 586 (681)
Q Consensus 512 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l 586 (681)
.|.+|...+.-.- ..+++....+-+.-+...+. ..+.++..++-.||+..-++-|-.++.+-... +...|+.
T Consensus 275 lDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L- 351 (459)
T KOG4340|consen 275 LDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL- 351 (459)
T ss_pred CCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-
Confidence 3445544332111 11223333333344444322 34566777777777777777777777654441 2233333
Q ss_pred HHHHH-cCCChHHHHHHHHHHH
Q 047571 587 IEAYG-YNDLCQEALSLFDKMR 607 (681)
Q Consensus 587 ~~~~~-~~~~~~~a~~~~~~m~ 607 (681)
+.++. -.-..++|.+-++.+.
T Consensus 352 LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 352 LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHhCCCCHHHHHHHHHHHH
Confidence 33332 3445666665555443
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.60 E-value=2.7e-06 Score=80.07 Aligned_cols=152 Identities=13% Similarity=0.132 Sum_probs=107.1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhh----ccCCh
Q 047571 354 VDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCS----QLKAL 429 (681)
Q Consensus 354 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~ 429 (681)
...+...|++++|++++... .+.......+..+++.++++.|.+.++.|.+.. .| .+...+..++. -.+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence 34556678888887777665 455666777888899999999999999988752 33 44444444432 23468
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhcCCh-hHHHHHHHHh
Q 047571 430 NHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR---NVISWTAMIDSCIENGRL-DDALGVFRSM 505 (681)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~-~~A~~~~~~m 505 (681)
..|..+|+++.+. +.+++.+.+.+..++...|++++|.+++.+.... +..+...++.+....|+. +.+.+.+.++
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 9999999997653 5678888999999999999999999999987763 444555667777777877 6677888888
Q ss_pred HhCCCCCC
Q 047571 506 QLSKHRPD 513 (681)
Q Consensus 506 ~~~g~~p~ 513 (681)
... .|+
T Consensus 263 ~~~--~p~ 268 (290)
T PF04733_consen 263 KQS--NPN 268 (290)
T ss_dssp HHH--TTT
T ss_pred HHh--CCC
Confidence 864 454
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=8.6e-08 Score=56.49 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571 609 GGFTPNHFTFKVLLSICNQAGFADEACRIFNVMS 642 (681)
Q Consensus 609 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (681)
.|+.||..||+.||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788999999999999999999999999999874
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=0.00026 Score=68.97 Aligned_cols=234 Identities=12% Similarity=-0.015 Sum_probs=139.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHH-------HH
Q 047571 381 WTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSII-------TS 453 (681)
Q Consensus 381 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~ 453 (681)
...+.++..+..++..|++-+....+.. -+..-++..-.++...|.+..+...-...++.|.. ...-| ..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4455666667777777777777766643 23333344444567777766666665555554421 11222 22
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHH
Q 047571 454 LMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKL 532 (681)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~ 532 (681)
+..+|.+.++++.++..|++...+-.. -....+....+++++..+...-. .|... -...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHH
Confidence 344666677888888888775431110 11122333445555555444332 23321 11222455667889999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC---hhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571 533 GKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG---SITWTAIIEAYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 533 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 609 (681)
|...|+++++.+ +-|+..|+...-+|.+.|.+..|..-.+...+.+ ...|.-=..++....++++|++.|++.++.
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999988876 5568888888889999999888888777666633 334444445555667888888888888885
Q ss_pred CCCCCHHHHHHHHHHHhc
Q 047571 610 GFTPNHFTFKVLLSICNQ 627 (681)
Q Consensus 610 g~~p~~~~~~~l~~~~~~ 627 (681)
.|+..-+..-+.-|..
T Consensus 456 --dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 456 --DPSNAEAIDGYRRCVE 471 (539)
T ss_pred --CchhHHHHHHHHHHHH
Confidence 4654444433444433
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=1.5e-05 Score=77.89 Aligned_cols=245 Identities=15% Similarity=0.075 Sum_probs=152.5
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChhHHHHH
Q 047571 425 QLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR---NVISWTAMIDSCIENGRLDDALGV 501 (681)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~ 501 (681)
+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+- |....-.|.-.|...|.-.+|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444555555555444443 334445555555555555555555555555442 233444444455555555566665
Q ss_pred HHHhHhCCCC--------CCHHHHHHHHHHhccccchHHHHHHH-HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHh
Q 047571 502 FRSMQLSKHR--------PDSVAMARMLSVSGQLKALKLGKEIH-GQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVF 572 (681)
Q Consensus 502 ~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (681)
++.-.....+ ++...-.. .............++| +.....+..+|+.+...|.-+|--.|++++|...|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 5554332100 00000000 1111222233334444 44445565689999999999999999999999999
Q ss_pred hhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhh---c-
Q 047571 573 DAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH-FTFKVLLSICNQAGFADEACRIFNVMSR---G- 644 (681)
Q Consensus 573 ~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~- 644 (681)
+.+.. | |...||-|...++...+.++|+..|++.++ +.|+- .....|.-+|...|.+++|.+.|-.... .
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 98877 4 578999999999999999999999999999 67864 5566778899999999999998876532 1
Q ss_pred ----CCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571 645 ----YKIEALEEHYLIMIDILTRFGRIEEAHRFR 674 (681)
Q Consensus 645 ----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 674 (681)
-...++..+|..|=.++.-.++.|-+.+..
T Consensus 532 ~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 532 RNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred cccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 012223467777777777777777555443
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=5.6e-06 Score=83.02 Aligned_cols=219 Identities=14% Similarity=0.066 Sum_probs=161.9
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 047571 444 FLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV 523 (681)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 523 (681)
++|-...-..+...+...|-...|..+|+++. .|...|.+|+..|+..+|..+..+..++ +||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 35555566667788888899999999988754 4677788888889888888888887773 7888888888888
Q ss_pred hccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC---hhhHHHHHHHHHcCCChHHHH
Q 047571 524 SGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG---SITWTAIIEAYGYNDLCQEAL 600 (681)
Q Consensus 524 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 600 (681)
..+..-+++|.++.+..... .-.++.....+.++++++.+.|+.-..-+ ..+|-.+..+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 87777788888887765432 22233333344688888888888665522 557777777777888888888
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 601 SLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 601 ~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
+.|..-+.. .| +...|+.+..+|.+.|+-.+|...+.+..+- + .-+...|....-...+-|.+++|++.+.+|..
T Consensus 540 ~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 888888873 56 5677888888888888888888888887764 3 22334555556667888888888888887765
Q ss_pred C
Q 047571 680 L 680 (681)
Q Consensus 680 ~ 680 (681)
+
T Consensus 616 ~ 616 (777)
T KOG1128|consen 616 L 616 (777)
T ss_pred h
Confidence 4
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.40 E-value=1.7e-05 Score=73.69 Aligned_cols=182 Identities=12% Similarity=-0.004 Sum_probs=111.0
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH----HHHHHHHHHhccccchHHHHHHHHHHHHcCCCCCh--h
Q 047571 477 RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDS----VAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVP--F 550 (681)
Q Consensus 477 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 550 (681)
.....+..+...+...|++++|...|+++... .|+. ..+..+..++...|+++.|...++.+.+....... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 34556777778888999999999999988775 3332 34566667777888888888888888765422111 1
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHhhhCCC--CChh-hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047571 551 VAAENIKMYGMC--------GFLECAKLVFDAVPV--KGSI-TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFK 619 (681)
Q Consensus 551 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 619 (681)
.+..+..++... |+.++|.+.++.+.. |+.. .+..+... ..+... . .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--------------~~~~~~---~-~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--------------DYLRNR---L-AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--------------HHHHHH---H-HHHHH
Confidence 333334444332 445555555554433 2211 11111000 000000 0 00112
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 620 VLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
.+...+.+.|++.+|+..++...+...-.| ....+..++.++.+.|+.++|..+++.+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455667888999999999998877644344 35778888999999999999998887764
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.35 E-value=0.0036 Score=61.26 Aligned_cols=167 Identities=11% Similarity=0.107 Sum_probs=123.0
Q ss_pred hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHhh
Q 047571 495 LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFAS-VPFVAAENIKMYGMCGFLECAKLVFD 573 (681)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 573 (681)
.+....+++++...-..--..+|...++.-.+..-+..|+.+|.++.+.+..+ +..++++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45556666666554322223467888888888889999999999999987776 67888888887764 67788999998
Q ss_pred hCCC--CChhhH-HHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCC--
Q 047571 574 AVPV--KGSITW-TAIIEAYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICNQAGFADEACRIFNVMSRGYK-- 646 (681)
Q Consensus 574 ~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 646 (681)
--.. +|...| ...+.-+...++-..|..+|++....++.|+ ...|..+++-=..-|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6555 665544 4567777788888899999999999877774 47899999988999999999999888876555
Q ss_pred CCCChhHHHHHHHHHh
Q 047571 647 IEALEEHYLIMIDILT 662 (681)
Q Consensus 647 ~~~~~~~~~~l~~~~~ 662 (681)
..+....-..+++-|.
T Consensus 506 qe~~~~~~~~~v~RY~ 521 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYG 521 (656)
T ss_pred hcCCCChHHHHHHHHh
Confidence 4433333444444443
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0002 Score=63.20 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=55.1
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHH
Q 047571 488 SCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPF-VAAENIKMYGMCGFLE 566 (681)
Q Consensus 488 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 566 (681)
.|+..|++++|++..+... +......=+..+.+..+.+.|.+.++.|.+.+-..+.. ...+.+....-.+++.
T Consensus 117 i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence 3555666666666555421 11111112223334444555555555554432111100 1122222222234444
Q ss_pred HHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 047571 567 CAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAG 629 (681)
Q Consensus 567 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 629 (681)
+|.-+|+++.. |+..+.+-...++...|++++|..++++..... .-++.+...++-.-...|
T Consensus 191 dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 191 DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLG 255 (299)
T ss_pred hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhC
Confidence 55555555444 333333444444444555555555555554432 223444444433333333
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.33 E-value=0.00014 Score=78.60 Aligned_cols=218 Identities=13% Similarity=0.112 Sum_probs=146.8
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHh-CCCC---ChhHHHHHHHHHHhcCChHHHHHHHhhCCC-CC-cchHHHHHH
Q 047571 414 VTVATVIPVCSQLKALNHGKEIHAYAVKN-QFLP---NVSIITSLMIMYSKCGVLDYSLKLFDEMEV-RN-VISWTAMID 487 (681)
Q Consensus 414 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-~~~~~~li~ 487 (681)
..|-.-|......++.++|.++.+++... +++- -..+|.++++.-..-|.-+...++|+++.+ -| ...|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 44555666667777777777777776542 2221 223566666666666777777777877766 23 346777777
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHH
Q 047571 488 SCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA-SVPFVAAENIKMYGMCGFLE 566 (681)
Q Consensus 488 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 566 (681)
.|.+.+..++|-++++.|.++ +.-....|...+..+.+..+-+.|..++.+.++.=.+ -........+++-.++|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 888888888888888888765 2345566777777777777777888887777664211 23555566677777888888
Q ss_pred HHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCHH
Q 047571 567 CAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH--FTFKVLLSICNQAGFAD 632 (681)
Q Consensus 567 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~ 632 (681)
++..+|+.... | -...|+.+|+.-.++|+.+.+..+|++....++.|-. ..|.-.+..=-+.|+-+
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 88888887766 2 3677888888888888888888888888888777732 33444444333445533
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.33 E-value=0.0001 Score=65.14 Aligned_cols=122 Identities=14% Similarity=-0.039 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSI 624 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~ 624 (681)
.......+....+.|++.+|...+.+... +|...|+.+..+|.+.|+.+.|..-|.+..+. .| ++..++.+.-.
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms 177 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMS 177 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHH
Confidence 33444455555555666666665555544 34555666666666666666666666665553 33 44555555555
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571 625 CNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFR 674 (681)
Q Consensus 625 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 674 (681)
+.-.|+.+.|..++..... ...-|...-..|..+....|++++|..+.
T Consensus 178 ~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5566666666666555443 12223444555555555666666665544
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=7.2e-05 Score=75.35 Aligned_cols=227 Identities=9% Similarity=-0.011 Sum_probs=163.5
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhcCCh
Q 047571 418 TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIENGRL 495 (681)
Q Consensus 418 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~ 495 (681)
.+...+.+.|-...|..+++... .+.-++.+|...|+..+|..+..+-.+ ||...|..+.+......-+
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 44455666777777877777644 355578888888888888888765544 6777888888777766678
Q ss_pred hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571 496 DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAV 575 (681)
Q Consensus 496 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 575 (681)
++|.++.+..-.+ .-..+.......++++++.+.++.-.+.+ .....+|-.+..++.+.++++.|...|...
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 8888887765432 11111111223578888888887766643 334677888888888999999999998877
Q ss_pred CC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChh
Q 047571 576 PV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEE 652 (681)
Q Consensus 576 ~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 652 (681)
.. || ...||.+-.+|.+.|+-.+|...+++..+-+ .-+...|...+....+.|.+++|++.+.++........|..
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~ 624 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDE 624 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccch
Confidence 66 55 7789999999999999999999999999876 55666777777778899999999999988865433333445
Q ss_pred HHHHHHHHHh
Q 047571 653 HYLIMIDILT 662 (681)
Q Consensus 653 ~~~~l~~~~~ 662 (681)
+...++....
T Consensus 625 vl~~iv~~~~ 634 (777)
T KOG1128|consen 625 VLLIIVRTVL 634 (777)
T ss_pred hhHHHHHHHH
Confidence 5555544443
No 112
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=2.4e-05 Score=76.16 Aligned_cols=125 Identities=10% Similarity=0.036 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 047571 552 AAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFA 631 (681)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 631 (681)
...++..+...++++.|..+|+++...++...-.++..+...++-.+|++++++..... +-+...+..-...|.+.+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34455555666777777777777776555555567777777788888888888888642 44666777777778888888
Q ss_pred HHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhccCC
Q 047571 632 DEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSSSL 680 (681)
Q Consensus 632 ~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 680 (681)
+.|+++.+++.+. .|+ ..+|..|..+|.+.|+++.|+-.++.+|.+
T Consensus 251 ~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 251 ELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8888888877753 554 678888888888888898888888888854
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.28 E-value=1.6e-05 Score=66.64 Aligned_cols=104 Identities=12% Similarity=-0.045 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047571 535 EIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGF 611 (681)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 611 (681)
..++..++ .++..+..+...+...|++++|...|+.... .+...|..+..++...|++++|+..|++..+.+
T Consensus 14 ~~~~~al~----~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~- 88 (144)
T PRK15359 14 DILKQLLS----VDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD- 88 (144)
T ss_pred HHHHHHHH----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 44444444 3344466678888888999999999887766 346778888888899999999999999998853
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 612 TPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 612 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+.+...+..+..++...|++++|++.|+...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788888888899999999999999987765
No 114
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.25 E-value=0.0015 Score=59.93 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=65.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHH---HHHhCCChHHHHHHHHHHHHcCcCCCHHHHHH-HHHHhhcc
Q 047571 351 SSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMS---GYVSNGRLEQALRSIAWMQQEGFRPDVVTVAT-VIPVCSQL 426 (681)
Q Consensus 351 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~ 426 (681)
..+-..+...|.+..|+.-|....+.|+..|.++.+ .|...|+...|+.-+....+. +||-..-.. --..+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 457777778888888888888888887777766653 577788888888888777764 666543221 12246778
Q ss_pred CChhHHHHHHHHHHHhC
Q 047571 427 KALNHGKEIHAYAVKNQ 443 (681)
Q Consensus 427 ~~~~~a~~~~~~~~~~~ 443 (681)
|.++.|..=|+...+..
T Consensus 120 Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHE 136 (504)
T ss_pred ccHHHHHHHHHHHHhcC
Confidence 88888888888877754
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.25 E-value=0.00024 Score=76.76 Aligned_cols=217 Identities=10% Similarity=0.032 Sum_probs=171.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--------CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHH
Q 047571 445 LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--------RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVA 516 (681)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 516 (681)
+.+...|-..|.-....++.++|++++++... .-...|.++++.-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44556788888888999999999999998764 12246888888777788888889999999874 223456
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC---hhhHHHHHHHHH
Q 047571 517 MARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG---SITWTAIIEAYG 591 (681)
Q Consensus 517 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~ 591 (681)
|..|...|.+.+..++|.++++.|.+.- .....+|-..+..+.+..+-++|..++.++.. |. +....-.+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8889999999999999999999999763 36788899999999999999999999887766 33 444555566667
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhcCC
Q 047571 592 YNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL--EEHYLIMIDILTRFGR 666 (681)
Q Consensus 592 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 666 (681)
+.|+.+++..+|+..+.. .|--...|+.+++.=.+.|+.+.+..+|+++... ++.|- ...|.-+++-=-+.|+
T Consensus 1612 k~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l-~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL-KLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCChhHhHHHHHHHHHHHHhcCc
Confidence 899999999999998875 2446778999999999999999999999999874 77664 4566666665555565
No 116
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.24 E-value=0.0021 Score=59.08 Aligned_cols=301 Identities=12% Similarity=-0.042 Sum_probs=163.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH---HHHHhhhhhhcccchhhhhhhhccCCCCCchHH-hHHHHH
Q 047571 281 SMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTIL---LPVIGEAWARKLGQEVHAYVLKNERYSEELFVR-SSLVDM 356 (681)
Q Consensus 281 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~ 356 (681)
.+...+...|++.+|+.-|...++- |+..|..+ ...|...|+...|..-+..+++. .||...- -.-...
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchh
Confidence 3567778888999999988887653 34444433 34566667777776666666543 4443321 122345
Q ss_pred HHhcCCHHHHHHHHhhcCCCCh------hh------------HHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHH
Q 047571 357 YCKCRDMNSAWRVFYETEERNE------IL------------WTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVAT 418 (681)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~------~~------------~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 418 (681)
+.+.|.++.|..-|+.+...++ .. ....+..+...|+...|+.....+.+. .+.|...|..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHH
Confidence 6677888888777776654321 01 111222334445555555555555543 2334444444
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHH
Q 047571 419 VIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDA 498 (681)
Q Consensus 419 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 498 (681)
-..+|...|++..|..=++...+.. ..++...-.+-..+...|+.+.++...++..+-|+..-. +|..-+.+.+.
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~----Cf~~YKklkKv 269 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL----CFPFYKKLKKV 269 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh----HHHHHHHHHHH
Confidence 4455555555555554444444332 223333333444444555555555554444432221100 00000111122
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571 499 LGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASV---PFVAAENIKMYGMCGFLECAKLVFDAV 575 (681)
Q Consensus 499 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 575 (681)
.+.++.|. .....+.+-.+.+-.+.+.+...... ...+..+-.+|...|++.+|.+...++
T Consensus 270 ~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 270 VKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 22222222 12234566667777777776544322 233444556677778888998888887
Q ss_pred CC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047571 576 PV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGG 610 (681)
Q Consensus 576 ~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 610 (681)
.. |+ +.++.--..+|.-...++.|+.-|+...+.+
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 77 33 6667777778888888999999999888853
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.24 E-value=8.7e-05 Score=68.94 Aligned_cols=185 Identities=12% Similarity=0.017 Sum_probs=127.8
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCc----chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH--HH
Q 047571 445 LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNV----ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDS--VA 516 (681)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~ 516 (681)
......+-.+...+.+.|++++|...|+++.. |+. ..+..+..++.+.|++++|...++++.+..-.... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34556677788889999999999999998875 332 35677888999999999999999999875321111 13
Q ss_pred HHHHHHHhccc--------cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHH
Q 047571 517 MARMLSVSGQL--------KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIE 588 (681)
Q Consensus 517 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 588 (681)
+..+..++... |+.+.|.+.++.+.+..... ...+..+..... ..... . .....+..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~~~----~~~~~---~-------~~~~~~a~ 174 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRMDY----LRNRL---A-------GKELYVAR 174 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHHHH----HHHHH---H-------HHHHHHHH
Confidence 33444444433 78899999999988764322 222222211111 00000 0 01224566
Q ss_pred HHHcCCChHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 589 AYGYNDLCQEALSLFDKMRNGGF-TP-NHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 589 ~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
.+.+.|++++|+..+++..+..- .| ....+..+..++.+.|++++|..+++.+...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78899999999999999987521 12 3578889999999999999999999988764
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.24 E-value=0.00011 Score=65.37 Aligned_cols=122 Identities=8% Similarity=-0.066 Sum_probs=89.9
Q ss_pred ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHH-HcCCC--hHHHH
Q 047571 527 LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAY-GYNDL--CQEAL 600 (681)
Q Consensus 527 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~-~~~~~--~~~a~ 600 (681)
.++.+++...++..++.+ +.+...|..+...|...|++++|...+++... | +...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344555555555555543 34577788888888888888888888887766 3 466777777764 56676 59999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChh
Q 047571 601 SLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEE 652 (681)
Q Consensus 601 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 652 (681)
+++++..+.+ +-+...+..+...+.+.|++++|+..|+.+.+. .+|+..
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~ 179 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVN 179 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcc
Confidence 9999999864 447788888999999999999999999999873 444443
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.0027 Score=62.12 Aligned_cols=215 Identities=10% Similarity=-0.002 Sum_probs=114.4
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc---chHH-------HH
Q 047571 416 VATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNV---ISWT-------AM 485 (681)
Q Consensus 416 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~-------~l 485 (681)
...+.++..+..+++.+.+-+....+.. -+..-++....+|...|.+.++...-+...+... .-|+ .+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3345555556666677777666666544 4444555566667777776666665554433111 1122 22
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 047571 486 IDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFL 565 (681)
Q Consensus 486 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 565 (681)
..+|.+.++++.++..|.+.......|+.. .+....+++....+...-.+... ..-...=...+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 334555666677777776655443333322 11122233333322222111111 11111124455666777
Q ss_pred HHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571 566 ECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMS 642 (681)
Q Consensus 566 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (681)
..|...|.++.. | |...|.....+|.+.|.+..|++-.+...+.+ ++....|..-..++....+++.|.+.|++..
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776655 2 35667777777777777777777766666642 3334445555555566666777777776554
Q ss_pred h
Q 047571 643 R 643 (681)
Q Consensus 643 ~ 643 (681)
+
T Consensus 454 e 454 (539)
T KOG0548|consen 454 E 454 (539)
T ss_pred h
Confidence 3
No 120
>PLN02789 farnesyltranstransferase
Probab=98.17 E-value=0.00093 Score=64.02 Aligned_cols=226 Identities=14% Similarity=0.073 Sum_probs=111.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHH-HHHHHHHhhccC-ChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571 380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVT-VATVIPVCSQLK-ALNHGKEIHAYAVKNQFLPNVSIITSLMIM 457 (681)
Q Consensus 380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (681)
++..+-..+...++.++|+.+..++++. .|+..| |+.--..+...| ++++++..++.+...+ +-+..+|+.-...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444445555666777777777777664 343332 222222333344 4566666666666554 2233344433333
Q ss_pred HHhcCCh--HHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccc---cc
Q 047571 458 YSKCGVL--DYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQL---KA 529 (681)
Q Consensus 458 ~~~~g~~--~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---~~ 529 (681)
+.+.|+. +++..+++++.+ .|...|+....++...|+++++++.++++++.+.. +...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 3444432 444555544443 23445555555555556666666666666554422 222232222222111 11
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcC----CChHHHHHH
Q 047571 530 LKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYN----DLCQEALSL 602 (681)
Q Consensus 530 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~~~ 602 (681)
.+ ...++......++.. .|..+|+-+...+... ++..+|.+.
T Consensus 195 ~~-------------------------------~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 195 LE-------------------------------AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred cc-------------------------------ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 10 001233333322222 2345666666666552 334557777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccC------------------CHHHHHHHHHHh
Q 047571 603 FDKMRNGGFTPNHFTFKVLLSICNQAG------------------FADEACRIFNVM 641 (681)
Q Consensus 603 ~~~m~~~g~~p~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~ 641 (681)
+.+..+.+ +.+......|++.|+... ..++|.++++.+
T Consensus 244 ~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 244 CLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 76665532 346667777777776532 235677777766
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.17 E-value=0.00011 Score=65.27 Aligned_cols=114 Identities=12% Similarity=0.060 Sum_probs=94.5
Q ss_pred cCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCC--HHHHH
Q 047571 562 CGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC-NQAGF--ADEAC 635 (681)
Q Consensus 562 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~--~~~A~ 635 (681)
.++.+++...++.... .+...|..+...|...|++++|+..|++..+.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 5566777777776555 457899999999999999999999999999964 44788888888874 67777 59999
Q ss_pred HHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 636 RIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 636 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
+++++..+. .| +...+..+..++.+.|++++|+..++++..
T Consensus 131 ~~l~~al~~---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALAL---DANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHh---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999988764 34 478899999999999999999999998754
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.00059 Score=65.97 Aligned_cols=134 Identities=17% Similarity=0.123 Sum_probs=85.1
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCHHHH-HHHHHHhccccchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHH
Q 047571 489 CIENGRLDDALGVFRSMQLSKHRPDSVAM-ARMLSVSGQLKALKLGKEIHGQVLKKDFASV-PFVAAENIKMYGMCGFLE 566 (681)
Q Consensus 489 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 566 (681)
+...|++++|+..++.+... .|+...| ......+...++.++|.+.++.+.... |+ +...-.+.++|.+.|+..
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChH
Confidence 44567778888888777664 4554444 334456666777777777777766643 22 455556667777777777
Q ss_pred HHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 567 CAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 567 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+|..+++.... .|+..|..|..+|...|+..++.....++ +...|+++.|+..+....+
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHH
Confidence 77777666555 34666777777777777766665544333 3456777777777766665
Q ss_pred c
Q 047571 644 G 644 (681)
Q Consensus 644 ~ 644 (681)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 3
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.17 E-value=4.3e-05 Score=64.00 Aligned_cols=89 Identities=11% Similarity=-0.175 Sum_probs=42.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhc
Q 047571 585 AIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRF 664 (681)
Q Consensus 585 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 664 (681)
.+...+...|++++|...|++..... +.+...|..+..++.+.|++++|+..|+...+. .+.+...+..++.++.+.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHc
Confidence 34444445555555555555554432 224444555555555555555555555544431 111244455555555555
Q ss_pred CCHHHHHHHHHh
Q 047571 665 GRIEEAHRFREM 676 (681)
Q Consensus 665 g~~~~A~~~~~~ 676 (681)
|+.++|++.+++
T Consensus 106 g~~~eAi~~~~~ 117 (144)
T PRK15359 106 GEPGLAREAFQT 117 (144)
T ss_pred CCHHHHHHHHHH
Confidence 555555554443
No 124
>PLN02789 farnesyltranstransferase
Probab=98.16 E-value=0.00061 Score=65.24 Aligned_cols=125 Identities=8% Similarity=-0.084 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcC---CC----hHHHHHHHHHHHhCCCCCCHHHH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYN---DL----CQEALSLFDKMRNGGFTPNHFTF 618 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~---~~----~~~a~~~~~~m~~~g~~p~~~~~ 618 (681)
-.+|.....++...|+++++.+.++++.+ .|..+|+.....+.+. |. .++.++...+++... +-|...|
T Consensus 142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW 220 (320)
T PLN02789 142 YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPW 220 (320)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHH
Confidence 34444444445555555555555555444 2344565555444433 22 356788887887752 4477888
Q ss_pred HHHHHHHhcc----CCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcC------------------CHHHHHHHHH
Q 047571 619 KVLLSICNQA----GFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFG------------------RIEEAHRFRE 675 (681)
Q Consensus 619 ~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g------------------~~~~A~~~~~ 675 (681)
+.+...+... +...+|.+.+.+..+ ..| +......|+++|+... ..++|.++++
T Consensus 221 ~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~---~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 297 (320)
T PLN02789 221 RYLRGLFKDDKEALVSDPEVSSVCLEVLS---KDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCS 297 (320)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHhhc---ccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHH
Confidence 8888888773 445678888887655 233 4677888999998642 3467888877
Q ss_pred hc
Q 047571 676 MS 677 (681)
Q Consensus 676 ~~ 677 (681)
.+
T Consensus 298 ~l 299 (320)
T PLN02789 298 EL 299 (320)
T ss_pred HH
Confidence 65
No 125
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=0.00022 Score=70.04 Aligned_cols=139 Identities=7% Similarity=-0.096 Sum_probs=97.5
Q ss_pred HHHHHHh-HhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 047571 499 LGVFRSM-QLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV 577 (681)
Q Consensus 499 ~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 577 (681)
.++|-++ ...+..+|......|--.|--.|++++|...|+.++... +-|..+|+.|...++...+.++|...|.++.+
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 3333333 444544666666777777777888888888888887753 33577888888888888889999999888877
Q ss_pred --CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHh---CC------CCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047571 578 --KG-SITWTAIIEAYGYNDLCQEALSLFDKMRN---GG------FTPNHFTFKVLLSICNQAGFADEACRIF 638 (681)
Q Consensus 578 --~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (681)
|+ +.++-.|.-.|...|.+++|.+.|=+.+. .+ ..++...|.+|-.++.-.++.|.+.++.
T Consensus 493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 66 55666777889999999999988776543 21 1223456777766666667666555443
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=5.2e-06 Score=50.00 Aligned_cols=34 Identities=29% Similarity=0.637 Sum_probs=31.8
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC
Q 047571 480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPD 513 (681)
Q Consensus 480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 513 (681)
.+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.11 E-value=0.00015 Score=76.75 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=79.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047571 546 ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLL 622 (681)
Q Consensus 546 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 622 (681)
..++..+..|..+....|.+++|..+++.+.+ |+ ......++..+.+.+++++|+..+++..+.. +-+......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 34466666666666666677777766666655 44 3445556666666667777777766666642 33455566666
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 623 SICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 623 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
.++.+.|++++|.++|+++... .+-+...+..+..++.+.|+.++|...|++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666667777777777666541 112255666666666666777766666654
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=5.7e-06 Score=49.82 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 047571 277 VVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNS 311 (681)
Q Consensus 277 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 311 (681)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 129
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.09 E-value=0.0001 Score=62.08 Aligned_cols=112 Identities=18% Similarity=0.066 Sum_probs=80.9
Q ss_pred cCCHHHHHHHhhhCCC--CCh----hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHH
Q 047571 562 CGFLECAKLVFDAVPV--KGS----ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICNQAGFADE 633 (681)
Q Consensus 562 ~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~ 633 (681)
.++...+...++.+.. |+. ...-.+...+...|++++|...|++..+....|+ ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555544 221 2233456778889999999999999999752232 2345567888999999999
Q ss_pred HHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 634 ACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 634 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
|+..++.... .......+...+++|.+.|+.++|+..+++
T Consensus 104 Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999976433 223456788899999999999999999875
No 130
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=7.1e-06 Score=48.93 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=30.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC
Q 047571 480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRP 512 (681)
Q Consensus 480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 512 (681)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0023 Score=56.78 Aligned_cols=82 Identities=10% Similarity=0.135 Sum_probs=39.1
Q ss_pred hccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChh
Q 047571 424 SQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK----CGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLD 496 (681)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 496 (681)
.+..+.+.|.+.++.|.+.. +..+.+.|..++.+ .+++.+|.-+|+++.+ |+..+.+....++...|+++
T Consensus 148 lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 34444555555555554422 33344444444332 2345555555555544 33344444445555555555
Q ss_pred HHHHHHHHhHhC
Q 047571 497 DALGVFRSMQLS 508 (681)
Q Consensus 497 ~A~~~~~~m~~~ 508 (681)
+|..++++...+
T Consensus 225 eAe~lL~eaL~k 236 (299)
T KOG3081|consen 225 EAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHhc
Confidence 555555555544
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.04 E-value=0.0009 Score=71.02 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=65.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047571 478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENI 556 (681)
Q Consensus 478 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 556 (681)
++..+-.|.....+.|++++|+.+++...+. .|+.. ....+...+.+.+.+++|....+...... +-+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 3556666677777777777777777777663 55543 33444455555555555555555555432 11233334444
Q ss_pred HHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 557 KMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 557 ~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
.++.+.|++++|..+|+++.. |+ ..++-.+..++...|+.++|...|++..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444443 11 23344444444444444444444444444
No 133
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.03 E-value=1e-05 Score=48.18 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047571 276 IVVWGSMIAGFAHNRLRWEALDCARWMIREGIYP 309 (681)
Q Consensus 276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 309 (681)
+.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999987
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.01 E-value=0.0017 Score=69.74 Aligned_cols=151 Identities=13% Similarity=0.090 Sum_probs=108.4
Q ss_pred ChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHh
Q 047571 209 NVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAH 288 (681)
Q Consensus 209 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 288 (681)
+...+..+..+|.+.|+.+++..+++.+.+.. +-++.+.|.+...|... ++++|++++.+ .+..+..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K-----------AV~~~i~ 181 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK-----------AIYRFIK 181 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH-----------HHHHHHh
Confidence 33467778888889999999999999999887 66788889999999888 99999998876 3455777
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHH
Q 047571 289 NRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWR 368 (681)
Q Consensus 289 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 368 (681)
.+++.++.+++.++.... |+...+- ..+.+.+....+...-..++-.+-..|-..++++++..
T Consensus 182 ~kq~~~~~e~W~k~~~~~--~~d~d~f---------------~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYN--SDDFDFF---------------LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred hhcchHHHHHHHHHHhcC--cccchHH---------------HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 889999999999988753 3333221 11222222222344445555667778888888999999
Q ss_pred HHhhcCCC---ChhhHHHHHHHHH
Q 047571 369 VFYETEER---NEILWTALMSGYV 389 (681)
Q Consensus 369 ~~~~~~~~---~~~~~~~li~~~~ 389 (681)
+++.+.+. |..+..-++.+|.
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHH
Confidence 98887753 5556666666665
No 135
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00049 Score=60.95 Aligned_cols=154 Identities=16% Similarity=0.050 Sum_probs=91.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcccc
Q 047571 452 TSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLK 528 (681)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 528 (681)
..+-..+.-.|+-+....+...... .|.......+....+.|++.+|+..+++..... ++|...++.+--+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 3344555556666666666655432 233344556777777788888888887776643 555556666666666666
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 529 ALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 529 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
+.+.|..-|.+..+... .+...+|.+.-.+.-.|+.+.|..++.+...
T Consensus 149 r~~~Ar~ay~qAl~L~~--------------------------------~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 149 RFDEARRAYRQALELAP--------------------------------NEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ChhHHHHHHHHHHHhcc--------------------------------CCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666665555554321 2233455666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 047571 609 GGFTPNHFTFKVLLSICNQAGFADEACRIFN 639 (681)
Q Consensus 609 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (681)
.+ .-|...-..|..+....|++++|..+..
T Consensus 197 ~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 197 SP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred CC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 42 2255555566666666666666666654
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.01 E-value=0.0012 Score=70.76 Aligned_cols=235 Identities=10% Similarity=0.046 Sum_probs=128.1
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHH-HhhccCChhHHHHHHHHHHHhCCCCChhHHHHHH
Q 047571 377 NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIP-VCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLM 455 (681)
Q Consensus 377 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 455 (681)
+...+..|+..+...+++++|.++.+...+. .|+...+..+.. .+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4556777888888888888888888765554 455443332222 34444444333333 122
Q ss_pred HHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHH
Q 047571 456 IMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLG 533 (681)
Q Consensus 456 ~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 533 (681)
.......++.....+...+.+ .+...+..+..+|-+.|+.++|..+|+++.+.. +-|....+.+...++.. +.++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222222233222222222222 122355566666777777777777777776654 33445555565555555 66666
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC-CCC
Q 047571 534 KEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNG-GFT 612 (681)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~ 612 (681)
.+++.+.... |...+++..+.++|.++...+ ..+++.-..+.+++..+ |..
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-------------~~d~d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-------------SDDFDFFLRIERKVLGHREFT 220 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-------------cccchHHHHHHHHHHhhhccc
Confidence 6665554432 344445555555555433311 22333334444444433 323
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHh
Q 047571 613 PNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILT 662 (681)
Q Consensus 613 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 662 (681)
--..++.-+-..|...++|++++.+++.+.+- . +-+.....-++++|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~-~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEH-D-NKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc-C-CcchhhHHHHHHHHH
Confidence 33445555667778888999999999988763 2 224566777777775
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0016 Score=57.32 Aligned_cols=178 Identities=13% Similarity=0.129 Sum_probs=103.9
Q ss_pred cCChHHHHHHHhhCCC--------CCcc-hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHH-Hhccccch
Q 047571 461 CGVLDYSLKLFDEMEV--------RNVI-SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLS-VSGQLKAL 530 (681)
Q Consensus 461 ~g~~~~a~~~~~~~~~--------~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~ 530 (681)
..+.++..+++.++.. ++.. .|..++-+....|+.+-|...++++..+- |.+.-...+-. -+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4456777777766542 2222 34555555566677777777777776653 43332222211 23345677
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 047571 531 KLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMR 607 (681)
Q Consensus 531 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 607 (681)
++|.++++.+++.+ +.+..++..=+-+.-..|+.-+|.+-+.+..+ .|...|.-+...|...|++++|.-.+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 77777777777665 33444454444555555665566665555444 566777777777777777777777777777
Q ss_pred hCCCCC-CHHHHHHHHHHHhccC---CHHHHHHHHHHhhh
Q 047571 608 NGGFTP-NHFTFKVLLSICNQAG---FADEACRIFNVMSR 643 (681)
Q Consensus 608 ~~g~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 643 (681)
-. .| ++..+..+.+.+.-.| +..-|.+++.+..+
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 63 34 5666666666654444 34455666664443
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.96 E-value=9.9e-05 Score=61.58 Aligned_cols=94 Identities=10% Similarity=-0.001 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC 625 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 625 (681)
......+...+...|++++|.+.++.+.. | +...|..+...+...|++++|...+++..+.+ +.+...+..+...+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 34555666777777888888777776654 3 35667777777777778888888777777653 44666777777777
Q ss_pred hccCCHHHHHHHHHHhhh
Q 047571 626 NQAGFADEACRIFNVMSR 643 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~ 643 (681)
...|++++|.+.|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777888888887776665
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.96 E-value=0.00048 Score=66.57 Aligned_cols=173 Identities=9% Similarity=-0.027 Sum_probs=109.1
Q ss_pred CChHHHHHHHhhCCC------CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHH
Q 047571 462 GVLDYSLKLFDEMEV------RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKE 535 (681)
Q Consensus 462 g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 535 (681)
.++.++....+.+.. ++...+...+.+......-..+-..+ .+... -.-...-|..-+ .+...|..+.|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLL-AKRSK-RGGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHH-HHHhC-ccchHHHHHHHH-HHHHhcccchHHH
Confidence 345556666666654 34445555555544333322222222 22222 011222333333 2345677888888
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047571 536 IHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT 612 (681)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 612 (681)
.++.+++.. +-++.......+.+.+.++..+|.+.++++.. |+ ...+-.+..+|.+.|+.++|+.++++..... +
T Consensus 328 ~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p 405 (484)
T COG4783 328 LLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-P 405 (484)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-C
Confidence 888877642 34566677777888888888888888887776 55 4556667778888888888888888877753 5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 047571 613 PNHFTFKVLLSICNQAGFADEACRIFN 639 (681)
Q Consensus 613 p~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (681)
-|+..|..|..+|...|+..+|....-
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 578888888888888888777776654
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.95 E-value=0.037 Score=58.00 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHH---HHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571 552 AAENIKMYGMCGFLE---CAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC 625 (681)
Q Consensus 552 ~~~l~~~~~~~g~~~---~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 625 (681)
.+.+++++.+.++.. +|.-+++.... | |..+--.+|+.|.-.|-+..|.++|+.+--.++.-|..-|. +...+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 345666777776654 44555554444 2 23333456777777787788888887776655555544442 23445
Q ss_pred hccCCHHHHHHHHHHhhhc
Q 047571 626 NQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~~ 644 (681)
...|++..+...+....+-
T Consensus 518 ~t~g~~~~~s~~~~~~lkf 536 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF 536 (932)
T ss_pred HhcccchhHHHHHHHHHHH
Confidence 5667777777777766553
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.87 E-value=0.034 Score=54.84 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=58.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcC--CCCCccHHHHHH
Q 047571 104 PVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESS--SESVYPWNALLR 181 (681)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~ 181 (681)
|-|..+|+.||+-+... -.++++..++++...- +..+..|..-+..-.+..+++..+.+|.... .-++..|...|.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 55888899998887766 8888999999887542 5556777888888888888999988887644 234555666655
Q ss_pred HHH
Q 047571 182 GAV 184 (681)
Q Consensus 182 ~~~ 184 (681)
--.
T Consensus 95 YVR 97 (656)
T KOG1914|consen 95 YVR 97 (656)
T ss_pred HHH
Confidence 433
No 142
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.86 E-value=0.023 Score=54.42 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 047571 551 VAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGF 630 (681)
Q Consensus 551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 630 (681)
..+..+..+...|+...|.++-.+..-|+-.-|-..+.+++..++|++-.++... .-++.-|...+.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4445566666677777788887777777777777788888888887776665432 1233667777777778888
Q ss_pred HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571 631 ADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFR 674 (681)
Q Consensus 631 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 674 (681)
..+|..+...+ + +..-+..|.+.|++.+|.+..
T Consensus 253 ~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 88877777642 1 244456677777777776653
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.85 E-value=0.057 Score=56.71 Aligned_cols=218 Identities=12% Similarity=0.084 Sum_probs=134.7
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChh
Q 047571 82 FARQNKLKEALVILDYMDQQGIPVNVTTFNALITAC--VRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFE 159 (681)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 159 (681)
....+++..|+.....+.++. |+. .|..++.++ .+.|+.++|..+++.....+.. |..|...+..+|.+.|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 345678888998888887763 333 344555554 5688889999888888777644 8888899999999999999
Q ss_pred HHHHhhhhcCCCCCc--cHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccC----------chh
Q 047571 160 DAEKVFDESSSESVY--PWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGAS----------ALM 227 (681)
Q Consensus 160 ~a~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------~~~ 227 (681)
+|..+++.....++. -...+..+|++.+ .+.+-...--+|.+. .+-+.+.|=.++....... -..
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~--~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREK--SYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999887754443 2344555666666 554443333333331 2223334444444433211 123
Q ss_pred hhHHHHHHHHHhC-CCCCcHHHhHHHHHHHhcCChHHHHHHHhc-----cCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047571 228 QGLKTHALLIKNG-FVDYLILRTSLIDMYFKCGKIKLARRVFDE-----TGDRDIVVWGSMIAGFAHNRLRWEALDCARW 301 (681)
Q Consensus 228 ~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 301 (681)
-|.+.++.+.+.+ -.-+..-.-.-...+-..|++++|++++.. ....+...-+--+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555666665544 111111111223445567889999988832 2223444555666777888888888888888
Q ss_pred HHHcC
Q 047571 302 MIREG 306 (681)
Q Consensus 302 m~~~g 306 (681)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88876
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.80 E-value=0.00047 Score=67.36 Aligned_cols=85 Identities=16% Similarity=0.033 Sum_probs=50.1
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCC
Q 047571 555 NIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGF 630 (681)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 630 (681)
+++.+...++-.+|.+++.+... .+...+..-...+.+.++++.|+++.+++.+ ..| +..+|..|..+|.+.|+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCC
Confidence 33333334444444444443333 1233444445556677777777777777777 355 44577777777777777
Q ss_pred HHHHHHHHHHh
Q 047571 631 ADEACRIFNVM 641 (681)
Q Consensus 631 ~~~A~~~~~~~ 641 (681)
++.|+..++.+
T Consensus 284 ~e~ALlaLNs~ 294 (395)
T PF09295_consen 284 FENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcC
Confidence 77777776654
No 145
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.79 E-value=0.00025 Score=53.72 Aligned_cols=80 Identities=13% Similarity=0.127 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHHhCCCCchhHH
Q 047571 75 IYKDIQRFARQNKLKEALVILDYMDQQGI-PVNVTTFNALITACVRTR--------SLVEGRLIHTHIRINGLENNGFLR 145 (681)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 145 (681)
-...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.+++. .....+.+|+.|...++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 35567788888999999999999999999 899999999999998753 345678899999999999999999
Q ss_pred HHHHHHhhc
Q 047571 146 TKLVKMYTS 154 (681)
Q Consensus 146 ~~l~~~~~~ 154 (681)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987764
No 146
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.77 E-value=0.00028 Score=58.87 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=84.7
Q ss_pred CCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCch
Q 047571 63 SSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNG 142 (681)
Q Consensus 63 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 142 (681)
..+...|.+......+...+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|...++...+.+ +.+.
T Consensus 8 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~ 85 (135)
T TIGR02552 8 DLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDP 85 (135)
T ss_pred HHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCh
Confidence 3444555666677788888889999999999999987765 4577888888888889999999999999888776 5567
Q ss_pred hHHHHHHHHhhcCCChhHHHHhhhhcC
Q 047571 143 FLRTKLVKMYTSCGSFEDAEKVFDESS 169 (681)
Q Consensus 143 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 169 (681)
..+..+...+...|++++|.+.|+...
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 86 RPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777778888888999999998887654
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.75 E-value=0.00045 Score=52.44 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCC-CCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCC
Q 047571 110 FNALITACVRTRSLVEGRLIHTHIRINGL-ENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGK 188 (681)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 188 (681)
-...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..--..+. +.
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~i---e~--------------------- 83 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDI---EN--------------------- 83 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhH---HH---------------------
Confidence 34556677777999999999999999999 999999999999887643211111 11
Q ss_pred cChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 047571 189 KRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAG 222 (681)
Q Consensus 189 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 222 (681)
.....+.+|+.|...+++|+..||++++..+.+
T Consensus 84 -kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 84 -KLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred -HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 567788899999999999999999999988754
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=3.8e-05 Score=44.52 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhHhCCC
Q 047571 480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKH 510 (681)
Q Consensus 480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 510 (681)
++|++++.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.75 E-value=0.0013 Score=55.29 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=33.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047571 585 AIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNV 640 (681)
Q Consensus 585 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (681)
.|...+...|++++|+..++..... ......+....+++.+.|++++|...|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3555666677777777777553322 22344555666777777777777777764
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.70 E-value=0.0001 Score=55.12 Aligned_cols=80 Identities=21% Similarity=0.249 Sum_probs=61.2
Q ss_pred CCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHH
Q 047571 593 NDLCQEALSLFDKMRNGGFT-PNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEA 670 (681)
Q Consensus 593 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 670 (681)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+++++. . +..+ +......++++|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 58899999999999986421 2455666689999999999999999987 2 2233 235556779999999999999
Q ss_pred HHHHHh
Q 047571 671 HRFREM 676 (681)
Q Consensus 671 ~~~~~~ 676 (681)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.69 E-value=0.022 Score=54.19 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=59.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhc-CCCCCC--hh
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFT-----PNHF-TFKVLLSICNQAGFADEACRIFNVMSRG-YKIEAL--EE 652 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~--~~ 652 (681)
.+..+...+.+.|++++|+++|++....-.. .+.. .|...+-++...||...|.+.++..... .++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4556677788888888888888887764322 1222 2333444566678888888888877643 123322 44
Q ss_pred HHHHHHHHHhh--cCCHHHHHHHHHhccCC
Q 047571 653 HYLIMIDILTR--FGRIEEAHRFREMSSSL 680 (681)
Q Consensus 653 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 680 (681)
....|++++-. ...+++|+.-++++..|
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 55666666643 24577787777777654
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=6e-05 Score=43.67 Aligned_cols=31 Identities=32% Similarity=0.406 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047571 277 VVWGSMIAGFAHNRLRWEALDCARWMIREGI 307 (681)
Q Consensus 277 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 307 (681)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788999999999999999999999988764
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.66 E-value=0.00058 Score=52.61 Aligned_cols=93 Identities=17% Similarity=0.063 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHh
Q 047571 583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILT 662 (681)
Q Consensus 583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 662 (681)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++...+. .+.+...+..+..++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4455666677788888888888877642 334466667777777788888888888776653 1223356777777888
Q ss_pred hcCCHHHHHHHHHhcc
Q 047571 663 RFGRIEEAHRFREMSS 678 (681)
Q Consensus 663 ~~g~~~~A~~~~~~~~ 678 (681)
..|+.++|...+++..
T Consensus 80 ~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 80 KLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 8888888888777653
No 154
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.01 Score=52.44 Aligned_cols=184 Identities=11% Similarity=0.069 Sum_probs=134.6
Q ss_pred hccCChhHHHHHHHHHHH---hC-CCCChh-HHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHH-HHHHHhcCCh
Q 047571 424 SQLKALNHGKEIHAYAVK---NQ-FLPNVS-IITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAM-IDSCIENGRL 495 (681)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l-i~~~~~~~~~ 495 (681)
....+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++++.. |+..-...| ..-+-..|++
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 445678899999988875 33 445543 455666677788999999999998765 333221111 1124557999
Q ss_pred hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571 496 DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAV 575 (681)
Q Consensus 496 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 575 (681)
++|+++|+.+.+.. +.|..++..-+-..-..|+.-.|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999876 666677776666666677777887777766654 5779999999999999999999999999987
Q ss_pred CC--CChh-hHHHHHHHHHc---CCChHHHHHHHHHHHhC
Q 047571 576 PV--KGSI-TWTAIIEAYGY---NDLCQEALSLFDKMRNG 609 (681)
Q Consensus 576 ~~--~~~~-~~~~l~~~~~~---~~~~~~a~~~~~~m~~~ 609 (681)
.- |... .+..+...+.- ..+.+.+.+.|.+.++.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 66 5433 34455555433 34788899999999885
No 155
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.63 E-value=0.072 Score=51.49 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=50.8
Q ss_pred HHHHHHH--HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHH
Q 047571 583 WTAIIEA--YGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLI 656 (681)
Q Consensus 583 ~~~l~~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 656 (681)
-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|.+++. .++|+...+++
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~------~LP~n~~~~ds 530 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ------KLPPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH------hCCCchhhHHH
Confidence 3444443 4568999998877666666 78999999999999999999999999997 55666666554
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.0013 Score=53.19 Aligned_cols=95 Identities=13% Similarity=-0.074 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 047571 550 FVAAENIKMYGMCGFLECAKLVFDAVPV--KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT--PNHFTFKVL 621 (681)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~l 621 (681)
.++..++..+.+.|++++|...++.+.. |+ ...+..+...+...|++++|+..++++...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3445556666666777777766666654 22 124445666666666777777777666653211 113455566
Q ss_pred HHHHhccCCHHHHHHHHHHhhhc
Q 047571 622 LSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
..++.+.|++++|.+.++.+.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 66666667777777766666553
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.11 Score=52.81 Aligned_cols=214 Identities=12% Similarity=0.068 Sum_probs=125.1
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHH-hCCCCCcHHHhHH------HHHHHhcCChH
Q 047571 190 RYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIK-NGFVDYLILRTSL------IDMYFKCGKIK 262 (681)
Q Consensus 190 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l------i~~~~~~~~~~ 262 (681)
..++|.+..+. .|....|..+.......-.++.|+..|-.... .|++.-...-+.. ...-.--|+++
T Consensus 678 gledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 678 GLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred chHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 45555555443 57777888887777777777777777765543 2332111111100 11122347899
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHhhhhhhcccchhhhhhh
Q 047571 263 LARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN----SVVLTILLPVIGEAWARKLGQEVHAYVL 338 (681)
Q Consensus 263 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 338 (681)
+|.+++-++..+|. .|..+.+.|++-...++++. -|-..| ...++.+-..++....++.|.+.+....
T Consensus 752 eaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 752 EAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred Hhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988877764 35556677777666665532 121222 2456677777777777887777776554
Q ss_pred hccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHH
Q 047571 339 KNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVAT 418 (681)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 418 (681)
.. ...++++.+..++++-+.+-..+.+ +....-.+...+...|..++|.+.+-+- +. | -.
T Consensus 824 ~~----------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----ka 883 (1189)
T KOG2041|consen 824 DT----------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KA 883 (1189)
T ss_pred ch----------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HH
Confidence 43 4567777777777776666666555 3344556667777777777776655322 11 1 12
Q ss_pred HHHHhhccCChhHHHHHHH
Q 047571 419 VIPVCSQLKALNHGKEIHA 437 (681)
Q Consensus 419 ll~~~~~~~~~~~a~~~~~ 437 (681)
.+..|...+++.+|.++-+
T Consensus 884 Av~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555566666655543
No 158
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.13 Score=52.98 Aligned_cols=97 Identities=8% Similarity=-0.001 Sum_probs=50.8
Q ss_pred HcCCCCChhhHHH-----HHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCC---hHHHHHHHhccCC-
Q 047571 203 ELGVQLNVYTFSC-----VIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGK---IKLARRVFDETGD- 273 (681)
Q Consensus 203 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~- 273 (681)
..|++.+..-|.. +|.-+...+.+..|.++-..+...-..- ..+|......+.+..+ -+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3455555544433 4555556666777776665553222112 3455555555555422 2223333334443
Q ss_pred -CChhhHHHHHHHHHhcCChHHHHHHHH
Q 047571 274 -RDIVVWGSMIAGFAHNRLRWEALDCAR 300 (681)
Q Consensus 274 -~~~~~~~~li~~~~~~~~~~~a~~~~~ 300 (681)
....+|..+..-....|+.+-|..+++
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle 531 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLE 531 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHh
Confidence 345566666666667777777766654
No 159
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.54 E-value=0.022 Score=47.78 Aligned_cols=131 Identities=11% Similarity=0.012 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C---ChhhHHH
Q 047571 511 RPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K---GSITWTA 585 (681)
Q Consensus 511 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~ 585 (681)
.|+...--.+..+....|+..+|...|.+....-+..|+.+.-.+.++....++..+|...++++-+ | .+...-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444444444445555555555555444444444555555555555555555555555555444 1 1334455
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 586 IIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 586 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+.+.+...|...+|...|+...+ +-|+...-......+.+.|+.++|..-+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 67778888888888888888887 567665555556667788877776655544433
No 160
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.52 E-value=0.0009 Score=65.70 Aligned_cols=118 Identities=13% Similarity=0.066 Sum_probs=92.7
Q ss_pred CCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHH
Q 047571 344 SEELFVRSSLVDMYCKCRDMNSAWRVFYETEER------NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVA 417 (681)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 417 (681)
+.+......+++.+....+++.+..++.+.... -..+..++++.|.+.|..+.++.+++.=...|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444455666666666777777776665542 23456799999999999999999999999999999999999
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 047571 418 TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKC 461 (681)
Q Consensus 418 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (681)
.+|..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988887777777777666666665
No 161
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.51 E-value=0.098 Score=50.19 Aligned_cols=106 Identities=17% Similarity=0.175 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccc
Q 047571 450 IITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKA 529 (681)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 529 (681)
+.+..+.-+...|+...|.++..+..-||..-|-..+.+++..++|++-.++... + -++.-|...+.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCC
Confidence 4445566666778888888888888778888888888888888888776665432 1 123556777777777777
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047571 530 LKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLV 571 (681)
Q Consensus 530 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 571 (681)
..+|..+...+ + +..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 77777666551 1 13445666666666666554
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.50 E-value=0.0019 Score=53.31 Aligned_cols=96 Identities=8% Similarity=-0.079 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571 550 FVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN 626 (681)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 626 (681)
...-.+...+...|++++|+.+|+-+.. | +..-|-.|.-++...|++++|+..|......+ +-|+..+-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344555666777888888888886655 3 35566777777778888888888888888764 447788888888888
Q ss_pred ccCCHHHHHHHHHHhhhcCC
Q 047571 627 QAGFADEACRIFNVMSRGYK 646 (681)
Q Consensus 627 ~~g~~~~A~~~~~~~~~~~~ 646 (681)
..|+.+.|.+.|+.....-+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc
Confidence 88888888888887766433
No 163
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.47 E-value=0.0016 Score=56.32 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=78.7
Q ss_pred CChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHH
Q 047571 105 VNVTTFNALITACVR-----TRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNAL 179 (681)
Q Consensus 105 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 179 (681)
.+..+|..++..+.+ .|+++.....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 466777777777664 57888889999999999999999999999998775 3322 11222211
Q ss_pred HHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCch-hhhHHHHHHHHH
Q 047571 180 LRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASAL-MQGLKTHALLIK 238 (681)
Q Consensus 180 l~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~ 238 (681)
+. .--.+.+-+++++++|...|+-||..|+..+++.+.+.+.. ....+++=+|.+
T Consensus 112 ---F~-hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 112 ---FM-HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred ---hc-cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 00 11115667788888888888888888888888888776643 233334444444
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.45 E-value=0.079 Score=48.84 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=44.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 620 VLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
.+..-|.+.|.+.-|+.-++.+.+.+.-.|. .+....++++|.+.|..++|.++...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4456688888888888888888877555543 667778888899999999888877654
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.43 E-value=0.01 Score=59.36 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHh
Q 047571 292 RWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFY 371 (681)
Q Consensus 292 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 371 (681)
+-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|.++|..--.. +..+.+|.....++.|.+++.
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~e----------nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHE----------NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCch----------hhHHHHHHHHHHHHHHHHHhh
Confidence 33445556777888888876543 34456667777777776654333 445555555555666655554
Q ss_pred hcCCC--------------ChhhHHHHHHHHHhCCChHHHHHHHH------HHHHcCcCC---CHHHHHHHHHHhhccCC
Q 047571 372 ETEER--------------NEILWTALMSGYVSNGRLEQALRSIA------WMQQEGFRP---DVVTVATVIPVCSQLKA 428 (681)
Q Consensus 372 ~~~~~--------------~~~~~~~li~~~~~~~~~~~A~~~~~------~m~~~g~~p---~~~~~~~ll~~~~~~~~ 428 (681)
..... ++.--.+....+...|+.++|..+.- .+.+-+-+. +..+...+...+.+...
T Consensus 683 ~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~ 762 (1081)
T KOG1538|consen 683 SGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDS 762 (1081)
T ss_pred cCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccc
Confidence 33211 11111233444556677777665432 122222222 34455555555667778
Q ss_pred hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcc-----------hHHHHHHHHHhcCCh
Q 047571 429 LNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVI-----------SWTAMIDSCIENGRL 495 (681)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-----------~~~~li~~~~~~~~~ 495 (681)
+..|.++|..|-.. ..+++.+...+++++|..+-+...+ +|+. -|.-.-.+|.+.|+-
T Consensus 763 ~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred cchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcch
Confidence 88899998877543 4578889999999999999998886 4442 233344567788888
Q ss_pred hHHHHHHHHhHhCC
Q 047571 496 DDALGVFRSMQLSK 509 (681)
Q Consensus 496 ~~A~~~~~~m~~~g 509 (681)
.+|.++++++....
T Consensus 834 ~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 834 REAVQVLEQLTNNA 847 (1081)
T ss_pred HHHHHHHHHhhhhh
Confidence 88888888776543
No 166
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.42 E-value=0.0025 Score=51.54 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=60.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN---HFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIM 657 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l 657 (681)
++-.++..+...|++++|.+.++++.+.. +.+ ...+..+..++.+.|++++|.++++.+.....-.+ ....+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34555666677777777777777776642 111 34555677777777777777777777665322222 24556667
Q ss_pred HHHHhhcCCHHHHHHHHHhc
Q 047571 658 IDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 658 ~~~~~~~g~~~~A~~~~~~~ 677 (681)
..++.+.|+.++|.+.++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHhCChHHHHHHHHHH
Confidence 77777777777777777664
No 167
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.41 E-value=0.14 Score=49.63 Aligned_cols=195 Identities=13% Similarity=0.067 Sum_probs=118.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHH-------HHHhc-cc---cchHHHHHHHHHHHHcCCCCC
Q 047571 480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARM-------LSVSG-QL---KALKLGKEIHGQVLKKDFASV 548 (681)
Q Consensus 480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-------l~~~~-~~---~~~~~a~~~~~~~~~~~~~~~ 548 (681)
.++..++....+.++..+|-+.+.-+... .|+...-..+ -+..+ .. -+...-..+|+.....++..-
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence 45666666677777777777666665542 3333221111 11111 11 123333455555555443322
Q ss_pred --hhHHHHHHHHHHhcCC-HHHHHHHhhhCCC---CChhhHHHHH----HHHHc---CCChHHHHHHHHHHHhCCCCC--
Q 047571 549 --PFVAAENIKMYGMCGF-LECAKLVFDAVPV---KGSITWTAII----EAYGY---NDLCQEALSLFDKMRNGGFTP-- 613 (681)
Q Consensus 549 --~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~m~~~g~~p-- 613 (681)
......-+.-+.+.|. -++|..+++.+.. .|..+-|.+. .+|.. ...+.+-+.+-+-..+.|++|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 1112222344566666 7889999988777 3443333322 23322 334566666666677889888
Q ss_pred --CHHHHHHHHHH--HhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 614 --NHFTFKVLLSI--CNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 614 --~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
+...-+.|.+| +...|++.++.-+=.=+. .+.|++.+|..++-++....++++|..++.++|-
T Consensus 457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 44566667665 578899999876544333 5788999999999999999999999999999985
No 168
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.41 E-value=0.0039 Score=49.55 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=55.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHh
Q 047571 586 IIEAYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILT 662 (681)
Q Consensus 586 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 662 (681)
+..++-..|+.++|+.+|++..+.|.... ...+..+.+.+...|++++|..+++.....+.-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667777777777777777765543 34556667777777777777777777665422111 1222333344666
Q ss_pred hcCCHHHHHHHH
Q 047571 663 RFGRIEEAHRFR 674 (681)
Q Consensus 663 ~~g~~~~A~~~~ 674 (681)
..|+.++|++++
T Consensus 87 ~~gr~~eAl~~~ 98 (120)
T PF12688_consen 87 NLGRPKEALEWL 98 (120)
T ss_pred HCCCHHHHHHHH
Confidence 777777777755
No 169
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.40 E-value=0.0034 Score=61.76 Aligned_cols=120 Identities=9% Similarity=-0.002 Sum_probs=85.6
Q ss_pred CCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC----CChhh
Q 047571 509 KHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK--DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV----KGSIT 582 (681)
Q Consensus 509 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~ 582 (681)
+.+.+...+..+++.+....+++.+..++...... ....-+.+..++++.|.+.|..+++..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777777777777776654 2333355556778888888888888887776554 77788
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 047571 583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA 628 (681)
Q Consensus 583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 628 (681)
+|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776666777776666666555
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.38 E-value=0.026 Score=56.66 Aligned_cols=55 Identities=9% Similarity=0.168 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCC--hHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 047571 381 WTALMSGYVSNGR--LEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAY 438 (681)
Q Consensus 381 ~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 438 (681)
++..-.+|.+..+ +-+.+.-+++|+.+|-.|+..... ..|+-.|++.+|.++|.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHH
Confidence 4444455555444 445556677888888888876543 345667778888777753
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.35 E-value=0.0015 Score=50.25 Aligned_cols=91 Identities=15% Similarity=0.058 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 047571 552 AAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA 628 (681)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 628 (681)
+..+...+...|++++|...++.+.. | +...+..+...+...|++++|.+.+++..+.+ +.+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 34456666677777777777776654 2 23567777888888899999999999988864 44557788888899999
Q ss_pred CCHHHHHHHHHHhhh
Q 047571 629 GFADEACRIFNVMSR 643 (681)
Q Consensus 629 g~~~~A~~~~~~~~~ 643 (681)
|++++|...++...+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999999987754
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.34 E-value=0.0051 Score=50.80 Aligned_cols=89 Identities=9% Similarity=-0.046 Sum_probs=68.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH
Q 047571 584 TAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDIL 661 (681)
Q Consensus 584 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 661 (681)
-.+...+...|++++|.++|+-+.. +.| +..-|..|.-+|-..|++++|+..+.....- .| ++..+-.+..++
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L---~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI---KIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHHHHHHH
Confidence 3445556678899999999988887 455 6667778888888889999999988877652 33 367788888888
Q ss_pred hhcCCHHHHHHHHHhc
Q 047571 662 TRFGRIEEAHRFREMS 677 (681)
Q Consensus 662 ~~~g~~~~A~~~~~~~ 677 (681)
...|+.+.|++.|+..
T Consensus 114 L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 114 LACDNVCYAIKALKAV 129 (157)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8899988888887753
No 173
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.30 E-value=0.0029 Score=54.77 Aligned_cols=97 Identities=11% Similarity=0.196 Sum_probs=78.1
Q ss_pred HHHHhhc--CCCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccC------------
Q 047571 367 WRVFYET--EERNEILWTALMSGYVSN-----GRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLK------------ 427 (681)
Q Consensus 367 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------ 427 (681)
...|+.. ..++-.+|..+++.|.+. |..+-....++.|.+-|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 455777888888888754 667888888999999999999999999999886532
Q ss_pred ----ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 047571 428 ----ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV 463 (681)
Q Consensus 428 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (681)
+.+-|.+++++|...|+-||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 347789999999999999999999999999976654
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.28 E-value=0.0054 Score=53.44 Aligned_cols=133 Identities=10% Similarity=-0.018 Sum_probs=89.6
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHH
Q 047571 69 EKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVN--VTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRT 146 (681)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (681)
+.....+..+...+...|++++|+..|++....+..+. ...+..+...+.+.|++++|...+++..+.. +.+...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 34455678888889999999999999999976543222 4678888889999999999999999998765 44566677
Q ss_pred HHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCc
Q 047571 147 KLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASA 225 (681)
Q Consensus 147 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 225 (681)
.+..++...|+...+..-++... . .+.+|.+++++.... .|+. |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~-----------------~--~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE-----------------A--LFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH-----------------H--HHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence 77777877777555444332210 0 345566666665443 2333 5555555554443
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.26 E-value=0.08 Score=50.42 Aligned_cols=106 Identities=9% Similarity=0.096 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCcC-----CCHH-HHHHHHHHhhccCChhHHHHHHHHHHHh--CCCCC--hh
Q 047571 380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFR-----PDVV-TVATVIPVCSQLKALNHGKEIHAYAVKN--QFLPN--VS 449 (681)
Q Consensus 380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~ 449 (681)
.+..+...+.+.|++++|.++|++....... .+.. .|...+-++...|+...|...++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4566777788888888888888887664322 1221 1222333455567787888877776643 22222 23
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHhhCCCCCcchHHHH
Q 047571 450 IITSLMIMYSK--CGVLDYSLKLFDEMEVRNVISWTAM 485 (681)
Q Consensus 450 ~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~l 485 (681)
....|+.++-. ...++.+..-|+.+.+.|..--..|
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 44555666544 3446666666666666555443333
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.0034 Score=59.45 Aligned_cols=128 Identities=9% Similarity=0.066 Sum_probs=87.8
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHHHHHhhhCCC---CChhhHHHHHHHH
Q 047571 515 VAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM-CGFLECAKLVFDAVPV---KGSITWTAIIEAY 590 (681)
Q Consensus 515 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 590 (681)
.+|..++..+.+.+..+.|+.+|.+..+.+ ..+..+|...+.+-.. .++.+.|..+|+.... .+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467788888888888999999999887542 3345566666555344 4555568888877666 4466777777777
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 591 GYNDLCQEALSLFDKMRNGGFTPNH---FTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 591 ~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
...|+.+.|..+|++.... +.++. ..|...+.-=.+.|+++.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7788888888888887765 33332 46777777777778888888887777764
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.22 E-value=0.086 Score=48.60 Aligned_cols=171 Identities=8% Similarity=0.034 Sum_probs=92.9
Q ss_pred HHHhcCChHHHHHHHhhCCC--CCcc-h---HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc--c-
Q 047571 457 MYSKCGVLDYSLKLFDEMEV--RNVI-S---WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ--L- 527 (681)
Q Consensus 457 ~~~~~g~~~~a~~~~~~~~~--~~~~-~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~- 527 (681)
.+.+.|++++|.+.|+++.. |+.. . .-.+..++.+.+++++|...+++..+....-...-+...+.+.+. .
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 34456777777777776654 3221 1 123455667777777777777777765322122223223322221 0
Q ss_pred --------------cc---hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHH
Q 047571 528 --------------KA---LKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAY 590 (681)
Q Consensus 528 --------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 590 (681)
.+ ...|...++.+++. |=...-..+|...+..+...=..---.+..-|
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y 185 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDRLAKYELSVAEYY 185 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 22334444444433 21222223333322222110000111345668
Q ss_pred HcCCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571 591 GYNDLCQEALSLFDKMRNG--GFTPNHFTFKVLLSICNQAGFADEACRIFNVMS 642 (681)
Q Consensus 591 ~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (681)
.+.|.+..|+.-++.+++. +.+........++.+|.+.|..++|.++...+.
T Consensus 186 ~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 186 TKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 8899999999999999986 112245667788899999999999999887654
No 178
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.17 E-value=0.0044 Score=60.96 Aligned_cols=89 Identities=9% Similarity=-0.145 Sum_probs=75.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 047571 555 NIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFA 631 (681)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 631 (681)
-...+...|++++|...|+++.. | +...|..+..+|...|++++|+..++++.+.. +.+...|..+..+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 35566778999999999998877 3 46678888889999999999999999999853 44778888899999999999
Q ss_pred HHHHHHHHHhhhc
Q 047571 632 DEACRIFNVMSRG 644 (681)
Q Consensus 632 ~~A~~~~~~~~~~ 644 (681)
++|++.|++..+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988763
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.16 E-value=0.0055 Score=56.86 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=36.8
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcC
Q 047571 591 GYNDLCQEALSLFDKMRNGGFTPN----HFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFG 665 (681)
Q Consensus 591 ~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 665 (681)
.+.|++++|+..|+.+.+. .|+ ...+..+..+|...|++++|...|+.+.+.+...|. ...+..++.++.+.|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3344555555555554442 221 133444444555555555555555544443222221 233333444444455
Q ss_pred CHHHHHHHHHh
Q 047571 666 RIEEAHRFREM 676 (681)
Q Consensus 666 ~~~~A~~~~~~ 676 (681)
+.++|.+++++
T Consensus 232 ~~~~A~~~~~~ 242 (263)
T PRK10803 232 DTAKAKAVYQQ 242 (263)
T ss_pred CHHHHHHHHHH
Confidence 55555554443
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.26 Score=50.44 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 047571 482 WTAMIDSCIENGRLDDALGVFRSMQLS-KHRPDSVAMARMLSVSGQLKALKLGKEIHGQVL 541 (681)
Q Consensus 482 ~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 541 (681)
|-.|..-....|.++.|++.--.+.+- .+-|....|..+.-+.+....+....+.|-++.
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 344444456678888888765444332 256667777776655555555555544444443
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.0026 Score=57.76 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=78.3
Q ss_pred HHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHH
Q 047571 558 MYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADE 633 (681)
Q Consensus 558 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 633 (681)
-..+.+++++|...|.++.. .|.+-|..-..+|.+.|.++.|++-.+..+. +.| -..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 46677899999999998877 4577788888899999999999998888887 566 45789999999999999999
Q ss_pred HHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571 634 ACRIFNVMSRGYKIEALEEHYLIMIDI 660 (681)
Q Consensus 634 A~~~~~~~~~~~~~~~~~~~~~~l~~~ 660 (681)
|++.|++. +.+.|+-++|..=++.
T Consensus 168 A~~aykKa---LeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKA---LELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhh---hccCCCcHHHHHHHHH
Confidence 99998844 4678887766654433
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.09 E-value=0.012 Score=46.78 Aligned_cols=93 Identities=14% Similarity=0.030 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCC--CchhHHHHHHH
Q 047571 75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVN--VTTFNALITACVRTRSLVEGRLIHTHIRINGLE--NNGFLRTKLVK 150 (681)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 150 (681)
.......+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++........ .+......+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 34456677788999999999999988876543 345667777888889999999999988765321 12233334445
Q ss_pred HhhcCCChhHHHHhhhh
Q 047571 151 MYTSCGSFEDAEKVFDE 167 (681)
Q Consensus 151 ~~~~~g~~~~a~~~~~~ 167 (681)
++...|+.++|++.+-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 67778888888887754
No 183
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.47 Score=49.20 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=76.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571 547 SVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN 626 (681)
Q Consensus 547 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 626 (681)
...-+.+-.+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+.. +.-|.-.+.+|.
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACL 755 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHH
Confidence 33444455566666778888888888888888877777777888888888777666655432 344566777888
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 047571 627 QAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRF 673 (681)
Q Consensus 627 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 673 (681)
+.|+.++|.+++-+... +...+.+|.+.|++.+|.++
T Consensus 756 ~~~n~~EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG----------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hcccHHHHhhhhhccCC----------hHHHHHHHHHhccHHHHHHH
Confidence 88888888888763321 11456777888888777764
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.08 E-value=0.0023 Score=44.93 Aligned_cols=58 Identities=21% Similarity=0.143 Sum_probs=42.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 586 IIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 586 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
+...+...|++++|++.|++.++.. +-+...+..+..++...|++++|.++|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677888888888888888764 336677777888888888888888888877653
No 185
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.08 E-value=0.00084 Score=50.17 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=57.3
Q ss_pred cCChhHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHH
Q 047571 85 QNKLKEALVILDYMDQQGIP-VNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEK 163 (681)
Q Consensus 85 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (681)
+|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57889999999999776431 2444555678888899999999999988 3333 2333444456788888899999988
Q ss_pred hhhh
Q 047571 164 VFDE 167 (681)
Q Consensus 164 ~~~~ 167 (681)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.07 E-value=0.012 Score=55.79 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=105.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH-hccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571 480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV-SGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM 558 (681)
Q Consensus 480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (681)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 368888999999999999999999998643 2333444433333 33356778899999998876 56678889999999
Q ss_pred HHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571 559 YGMCGFLECAKLVFDAVPV--KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC 625 (681)
Q Consensus 559 ~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 625 (681)
+.+.++.+.|..+|++... +. ...|...+.--.+.|+.+.+.++.+++.+. -|+......+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 9999999999999998877 33 348999999989999999999999999984 55544444454444
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.02 E-value=0.0028 Score=45.05 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=46.3
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHH
Q 047571 591 GYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYL 655 (681)
Q Consensus 591 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 655 (681)
...|++++|+++|+++.+.. +-+...+..++.+|.+.|++++|.++++.+... .|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHH
Confidence 45788999999999988853 447788888999999999999999999977764 45533333
No 188
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.00 E-value=0.011 Score=58.28 Aligned_cols=98 Identities=13% Similarity=-0.032 Sum_probs=79.3
Q ss_pred HHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChH
Q 047571 521 LSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQ 597 (681)
Q Consensus 521 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 597 (681)
...+...|+++.|...++++++.+ +.+...+..+..+|...|++++|...++++.. | +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 345567799999999999999865 33577888899999999999999999998877 4 4667888899999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHH
Q 047571 598 EALSLFDKMRNGGFTPNHFTFKVL 621 (681)
Q Consensus 598 ~a~~~~~~m~~~g~~p~~~~~~~l 621 (681)
+|+..|++..+. .|+......+
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~ 109 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHH
Confidence 999999999984 5644433333
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.94 E-value=0.017 Score=50.13 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=56.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP--NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMI 658 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~ 658 (681)
.|..+...+...|++++|+..|++.......| ...++..+...+...|++++|++.++...+. .|+ ...+..+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~la 113 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHH
Confidence 45666666667777777777777776542222 2346677777777777777777777766543 222 44455555
Q ss_pred HHHh-------hcCCHHHHHHHHH
Q 047571 659 DILT-------RFGRIEEAHRFRE 675 (681)
Q Consensus 659 ~~~~-------~~g~~~~A~~~~~ 675 (681)
.++. +.|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 6677665554443
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.92 E-value=0.048 Score=45.84 Aligned_cols=125 Identities=12% Similarity=0.033 Sum_probs=99.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC----CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC---CHH
Q 047571 544 DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV----KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP---NHF 616 (681)
Q Consensus 544 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~ 616 (681)
...|+...--.|.......|+..+|...|++... .|....-.+.++....++...|...++++.+.+ | ++.
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd 161 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPD 161 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCC
Confidence 3467777778899999999999999999998777 667778888899999999999999999998853 4 344
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 047571 617 TFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRF 673 (681)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 673 (681)
+...+...+...|.+.+|...|+.... ..|+...-......+.+.|+.++|..-
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 556678899999999999999997765 345544444445678889987777653
No 191
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.85 E-value=0.029 Score=48.86 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=57.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC--HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHH
Q 047571 378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD--VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLM 455 (681)
Q Consensus 378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 455 (681)
...+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+....+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566667777778888888888887766433222 3456666667777788888888887777653 22444555566
Q ss_pred HHHHhcCChHHHH
Q 047571 456 IMYSKCGVLDYSL 468 (681)
Q Consensus 456 ~~~~~~g~~~~a~ 468 (681)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6666666544433
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.85 E-value=0.0047 Score=44.02 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhhh
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAG-FADEACRIFNVMSR 643 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 643 (681)
...|..+...+...|++++|+..|++..+.. +-+...|..+..++...| ++++|++.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666777777777777777777777642 335566777777777777 57777777766544
No 193
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.84 E-value=0.041 Score=47.72 Aligned_cols=91 Identities=11% Similarity=-0.075 Sum_probs=65.8
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 047571 72 PRAIYKDIQRFARQNKLKEALVILDYMDQQGIPV--NVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLV 149 (681)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 149 (681)
...+..+...+...|++++|+..|+........+ ...++..+...+...|++++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456777888888999999999999987653222 23578888888899999999999999888764 33445566666
Q ss_pred HHhh-------cCCChhHHHH
Q 047571 150 KMYT-------SCGSFEDAEK 163 (681)
Q Consensus 150 ~~~~-------~~g~~~~a~~ 163 (681)
..+. ..|+++.|+.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~ 134 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEA 134 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHH
Confidence 6666 5556555554
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.80 E-value=0.083 Score=54.60 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHH
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYL 655 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 655 (681)
...|..+.-.....|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++..+ +.|...+|.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~---L~P~~pt~~ 490 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN---LRPGENTLY 490 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCchHH
Confidence 456777766666789999999999999985 47888899999999999999999999987654 455545554
No 195
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.78 E-value=0.52 Score=44.91 Aligned_cols=239 Identities=13% Similarity=0.073 Sum_probs=138.1
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHH
Q 047571 425 QLKALNHGKEIHAYAVKNQFLPNVSI--ITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDAL 499 (681)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~ 499 (681)
-.|+.+.|.+-|+.|.. .|.... ...|.-.--+.|..+.|..+-++... | -...+...+...|..|+|+.|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 35677777777776664 222221 12222233456777777777666554 2 2346677777788888888888
Q ss_pred HHHHHhHhCC-CCCCHH--HHHHHHHHhcc---ccchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHh
Q 047571 500 GVFRSMQLSK-HRPDSV--AMARMLSVSGQ---LKALKLGKEIHGQVLKKDFASV-PFVAAENIKMYGMCGFLECAKLVF 572 (681)
Q Consensus 500 ~~~~~m~~~g-~~p~~~--~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 572 (681)
++++.-++.. +.++.. .-..|+.+-.. ..+...|...-.+..+ +.|+ ......-.+.+.+.|+..++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 8877665543 333332 12223332211 1234444444444443 2333 122233456777888888888888
Q ss_pred hhCCC--CChhhHHHHHHHHHcCCChHHHHHHHHH---HHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCC
Q 047571 573 DAVPV--KGSITWTAIIEAYGYNDLCQEALSLFDK---MRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYK 646 (681)
Q Consensus 573 ~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~---m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 646 (681)
+.+-+ |.+..+. +..+.+.|+ .++.-+++ +.+ ++| |......+..+-...|++..|..--+... .
T Consensus 287 E~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r 357 (531)
T COG3898 287 ETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---R 357 (531)
T ss_pred HHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHh---h
Confidence 77655 4444442 223344444 33333333 333 355 56677777788888888888877766554 3
Q ss_pred CCCChhHHHHHHHHHhhc-CCHHHHHHHHHhc
Q 047571 647 IEALEEHYLIMIDILTRF-GRIEEAHRFREMS 677 (681)
Q Consensus 647 ~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 677 (681)
..|....|..|.++-... ||-.+++.++-+-
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 577778888888887544 8888888877654
No 196
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.012 Score=53.52 Aligned_cols=99 Identities=15% Similarity=0.098 Sum_probs=83.1
Q ss_pred HHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC---hhhHHHHHHHHHcCCChHH
Q 047571 522 SVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG---SITWTAIIEAYGYNDLCQE 598 (681)
Q Consensus 522 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 598 (681)
.-..+.+++.+|+..|.+.++.. +-++..|..-..+|.+.|.++.|.+-.+....-| ..+|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45677899999999999999864 3357777888999999999999999999888844 5689999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHH
Q 047571 599 ALSLFDKMRNGGFTPNHFTFKVLLS 623 (681)
Q Consensus 599 a~~~~~~m~~~g~~p~~~~~~~l~~ 623 (681)
|++.|++.++ +.|+-.+|-.-+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 9999999998 6887766654443
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.74 E-value=0.0063 Score=42.69 Aligned_cols=55 Identities=27% Similarity=0.292 Sum_probs=47.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 621 LLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
+...+.+.|++++|++.|+.+.+. .| +...+..+..++.+.|++++|.+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456789999999999999999875 24 58889999999999999999999998864
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.73 E-value=0.0032 Score=44.73 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=43.5
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 626 NQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
.+.|++++|+++|+.+.+. .+-+...+..++.+|.+.|++++|.+++++++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999875 222578888999999999999999999998764
No 199
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.68 E-value=0.044 Score=56.58 Aligned_cols=82 Identities=15% Similarity=0.066 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571 596 CQEALSLFDKMRNGG-FTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFR 674 (681)
Q Consensus 596 ~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 674 (681)
...+.+..++..... .+.++..|..+.-.....|++++|...+++... +.|+...|..++.++...|+.++|.+.+
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555555544432 234667788777777778999999999998775 3578889999999999999999999999
Q ss_pred HhccCC
Q 047571 675 EMSSSL 680 (681)
Q Consensus 675 ~~~~~~ 680 (681)
++--.+
T Consensus 477 ~~A~~L 482 (517)
T PRK10153 477 STAFNL 482 (517)
T ss_pred HHHHhc
Confidence 875443
No 200
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.1 Score=49.80 Aligned_cols=151 Identities=11% Similarity=-0.132 Sum_probs=75.9
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH--hccccchHHHHHHHHHHHHcCCCCC-hhHHHH----------
Q 047571 488 SCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV--SGQLKALKLGKEIHGQVLKKDFASV-PFVAAE---------- 554 (681)
Q Consensus 488 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~---------- 554 (681)
++.-.|+.++|.++-....+.. ++ ..+...++. +-..++.+.+...|.+.++.+.... ......
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence 4556677777777766665532 11 123333332 3345667777777777665432211 001111
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC--CC-----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHh
Q 047571 555 NIKMYGMCGFLECAKLVFDAVPV--KG-----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN-HFTFKVLLSICN 626 (681)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 626 (681)
-..-..+.|++..|.+.+.+... |+ ...|-....+..+.|+.++|+.--++..+ +.|. ...|..-..++.
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHH
Confidence 11223445666666666666555 22 33444445555566666666666665554 2221 122222333444
Q ss_pred ccCCHHHHHHHHHHhhh
Q 047571 627 QAGFADEACRIFNVMSR 643 (681)
Q Consensus 627 ~~g~~~~A~~~~~~~~~ 643 (681)
..++|++|.+-++...+
T Consensus 333 ~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55666666666665544
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.12 Score=46.20 Aligned_cols=129 Identities=11% Similarity=0.047 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcC-----CCCChhHHHHH
Q 047571 481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKD-----FASVPFVAAEN 555 (681)
Q Consensus 481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l 555 (681)
..+.++..+.-.|.+.-.+..+++.++..-+-+......+.+...+.||.+.|...++.+.+.. ++...-+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666667778888888889998887767777788888888889999999999999777643 23333333444
Q ss_pred HHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571 556 IKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 556 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 609 (681)
...|.-..++..|...+.++.. .++...|.-.-...-.|+..+|++.++.|++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556667888888888888887 33444454444444578899999999999885
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.60 E-value=0.036 Score=52.59 Aligned_cols=94 Identities=9% Similarity=-0.061 Sum_probs=45.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhh---cCCC-CCChh
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMR----NGGFT-PNHFTFKVLLSICNQAGFADEACRIFNVMSR---GYKI-EALEE 652 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~----~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-~~~~~ 652 (681)
.+..+..++.-.|+++.|.+.|+.-. +.|-. .......+|...|.-..+++.|++++.+-.. .++- .-...
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34444555555555555555555432 22211 1233444555666655666666666554321 1111 11235
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHH
Q 047571 653 HYLIMIDILTRFGRIEEAHRFRE 675 (681)
Q Consensus 653 ~~~~l~~~~~~~g~~~~A~~~~~ 675 (681)
.+.+|..++..-|..++|+.+.+
T Consensus 317 acwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 56666666666666666665554
No 203
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.57 E-value=0.4 Score=52.50 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=66.8
Q ss_pred CChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc----ccchHHHHHHH
Q 047571 462 GVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ----LKALKLGKEIH 537 (681)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~ 537 (681)
++++.|+..+.++. ...|.-.++--.++|-+++|+.++ .|+...+..+..+|+. .+.++.|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555555555544 222333333344555566665554 5666666555544432 34444444433
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC-Chh--hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 047571 538 GQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVK-GSI--TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN 614 (681)
Q Consensus 538 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 614 (681)
+..-+ ....+.+|..+|+|.+|..+-.++..+ |.. .-..|+.-+...+++-+|-+++.+-... |
T Consensus 963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~- 1029 (1265)
T KOG1920|consen 963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P- 1029 (1265)
T ss_pred HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-
Confidence 32211 112334444445555555554444432 211 1133444444555555555555444331 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHH
Q 047571 615 HFTFKVLLSICNQAGFADEACRIFN 639 (681)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (681)
.-.+..+++...|++|+.+-.
T Consensus 1030 ----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1030 ----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred ----HHHHHHHhhHhHHHHHHHHHH
Confidence 122333445555555555444
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.53 E-value=0.24 Score=48.07 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 613 PNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 613 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
.|...+.+++.++.-.|+++.|.+..+.|.+-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 46778889999999999999999999998763
No 205
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.52 E-value=0.0078 Score=44.14 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhc---CCCC-CC-hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 616 FTFKVLLSICNQAGFADEACRIFNVMSRG---YKIE-AL-EEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
.++..+...|...|++++|++.+++..+. .|.. |+ ..++..+..++.+.|++++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666777777777777777777766432 1211 22 556777777788888888888777764
No 206
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.51 E-value=0.0056 Score=43.61 Aligned_cols=63 Identities=24% Similarity=0.113 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcC-CHHHHHHHHHhccC
Q 047571 614 NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFG-RIEEAHRFREMSSS 679 (681)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 679 (681)
++.+|..+...+...|++++|+..|++..+. .| +...|..+..++.+.| ++++|++.+++...
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5678889999999999999999999998874 44 4788999999999999 79999999987643
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.47 E-value=0.012 Score=42.46 Aligned_cols=56 Identities=14% Similarity=0.020 Sum_probs=46.8
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 588 EAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 588 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
..|.+.+++++|++.++++...+ +.+...+......+.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56788899999999999999863 447777888888999999999999999988764
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.46 E-value=0.62 Score=41.76 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=54.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDI 660 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~ 660 (681)
.+..++.-|=......+|...+..+.+. .-.. -..+..-|.+.|.+..|..-++.+.+.+.-.+. ......++.+
T Consensus 112 ~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 112 EFEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 3445555555555566665555554431 1111 123566788999999999999999887544443 5667888899
Q ss_pred HhhcCCHHHHHH
Q 047571 661 LTRFGRIEEAHR 672 (681)
Q Consensus 661 ~~~~g~~~~A~~ 672 (681)
|.+.|..+.|..
T Consensus 188 y~~l~~~~~a~~ 199 (203)
T PF13525_consen 188 YYKLGLKQAADT 199 (203)
T ss_dssp HHHTT-HHHHHH
T ss_pred HHHhCChHHHHH
Confidence 999998885543
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.18 Score=45.10 Aligned_cols=138 Identities=9% Similarity=-0.004 Sum_probs=100.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHH-----H
Q 047571 380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITS-----L 454 (681)
Q Consensus 380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 454 (681)
..+.+++.+.-.|.+.-.+..+++.++...+.+......+.+...+.|+.+.|...|+...+..-..+..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45667777777888888899999999877677888888888889999999999999997776433333333333 3
Q ss_pred HHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHH
Q 047571 455 MIMYSKCGVLDYSLKLFDEMEVR---NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMAR 519 (681)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 519 (681)
...|.-.+++..|...++++... |+..-|.-.-+..-.|+..+|++.++.|... .|...+-+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 34556678888899999888763 4444455444555578999999999999885 455444443
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.16 Score=46.88 Aligned_cols=98 Identities=14% Similarity=0.026 Sum_probs=78.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHc---CCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047571 546 ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGY---NDLCQEALSLFDKMRNGGFTPNHFTFK 619 (681)
Q Consensus 546 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~ 619 (681)
+-|..-|..|...|...|+.+.|..-|....+ ++...+..+..++.. .....++..+|+++.... +-|.....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 44678888888888888988888888887766 556667667666553 235678999999999853 44778888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 620 VLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 8889999999999999999999874
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.34 E-value=1 Score=43.01 Aligned_cols=273 Identities=15% Similarity=0.096 Sum_probs=175.8
Q ss_pred cCCHHHHHHHHhhcC---CCChhhHHHHHH--HHHhCCChHHHHHHHHHHHHcCcCCCHH--HHHHHHHHhhccCChhHH
Q 047571 360 CRDMNSAWRVFYETE---ERNEILWTALMS--GYVSNGRLEQALRSIAWMQQEGFRPDVV--TVATVIPVCSQLKALNHG 432 (681)
Q Consensus 360 ~~~~~~a~~~~~~~~---~~~~~~~~~li~--~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a 432 (681)
.||-..|.++-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|.+. |... -...|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 466666666654433 224333333333 344579999999999999863 2221 123344445677888888
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcc--hHHHHHHHHH---hcCChhHHHHHH
Q 047571 433 KEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV-----RNVI--SWTAMIDSCI---ENGRLDDALGVF 502 (681)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~--~~~~li~~~~---~~~~~~~A~~~~ 502 (681)
.++-+.....- +--.-...+.+...+..|+++.|+++++.-.. +++. .-..|+.+-. -..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877766543 22345677888999999999999999987553 4432 1222332211 123344555544
Q ss_pred HHhHhCCCCCCHHHH-HHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC--HHHHHH--HhhhCCC
Q 047571 503 RSMQLSKHRPDSVAM-ARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGF--LECAKL--VFDAVPV 577 (681)
Q Consensus 503 ~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~--~~~~~~~ 577 (681)
.+..+ +.||..-- ..-..++.+.|++.++-.+++.+-+.. |.+.+... ..+.+.|+ .+...+ -+..|+.
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk~ 326 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGDTALDRLKRAKKLESLKP 326 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcCc
Confidence 44433 56665532 233467788999999999999988864 44444332 23445554 222222 2455666
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhhhc
Q 047571 578 KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ-AGFADEACRIFNVMSRG 644 (681)
Q Consensus 578 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 644 (681)
.+..+--.+..+-...|++..|..--+.... ..|....|..|.+.-.. .||-.++.+.+-+..+.
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 6777777788888889999999888887776 58999999988887654 49999999999888764
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.30 E-value=0.032 Score=47.02 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=54.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh----cCCCCCChhHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR----GYKIEALEEHYL 655 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~ 655 (681)
+...++..+...|++++|+.+.+++.... |-|...|..++.+|...|+..+|.++|+.+.+ .+|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45667777888999999999999999853 44888999999999999999999999988743 468888865543
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.30 E-value=0.29 Score=43.86 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=49.8
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 047571 71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQG--IPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGL 138 (681)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 138 (681)
++..+-.....+...|++.+|++.|+.+.... -+--......++.++.+.|++..|...++...+.-+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 34556667788889999999999999997652 223445667778888899999999999999887753
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=1.1 Score=43.32 Aligned_cols=165 Identities=8% Similarity=-0.114 Sum_probs=77.0
Q ss_pred HhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHH--HhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHH
Q 047571 422 VCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMY--SKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDAL 499 (681)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 499 (681)
++...|+.+.|.++-....+.. ....+..++++. --.++.+.|...|++...-|+..+.+- ..-...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk--------~~~~~~ 246 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK--------SASMMP 246 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH--------hHhhhH
Confidence 3455677777776665555433 222333333332 235667777777777765333221110 000011
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCC
Q 047571 500 GVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK---DFASVPFVAAENIKMYGMCGFLECAKLVFDAVP 576 (681)
Q Consensus 500 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 576 (681)
+.++.+...| +-..+.|.+..|.+.|.+.+.. +..++...|........+.|+.++|..--++..
T Consensus 247 k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 247 KKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 1111111111 1112334444444444444432 234445555555555666666666666666555
Q ss_pred CCCh-hhHHHHH--HHHHcCCChHHHHHHHHHHHhC
Q 047571 577 VKGS-ITWTAII--EAYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 577 ~~~~-~~~~~l~--~~~~~~~~~~~a~~~~~~m~~~ 609 (681)
.-|. .++-.+. .++...+++++|++-|++..+.
T Consensus 315 ~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 315 KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5332 2222222 2233456667777666666554
No 215
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.27 E-value=0.029 Score=50.40 Aligned_cols=97 Identities=9% Similarity=0.194 Sum_probs=78.7
Q ss_pred CCCCCCCCCCchhHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---------------
Q 047571 62 PSSLPLHEKNPRAIYKDIQRFARQ-----NKLKEALVILDYMDQQGIPVNVTTFNALITACVRTR--------------- 121 (681)
Q Consensus 62 ~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------------- 121 (681)
..+.+...++-.+|...+..+... +..+-....+..|.+.|+..|..+|+.||+.+-+..
T Consensus 57 F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP 136 (406)
T KOG3941|consen 57 FEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYP 136 (406)
T ss_pred hhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCc
Confidence 344556667778888888777654 667778888999999999999999999999876643
Q ss_pred -ChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571 122 -SLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF 158 (681)
Q Consensus 122 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (681)
+-.-+..++++|...|+.||..+-..|++++++.+-.
T Consensus 137 ~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 137 QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2334678999999999999999999999999887653
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.25 E-value=0.018 Score=46.35 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHh
Q 047571 610 GFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILT 662 (681)
Q Consensus 610 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 662 (681)
...|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|++=..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35678888888888888888888888888888888887777777777766543
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.17 E-value=0.077 Score=48.13 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=75.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP---NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIM 657 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l 657 (681)
.|+.-+..+. .|++..|...|...++.. +- .+..+..|..++...|++++|..+|..+.+.++-.|- ++.+--|
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4776666554 566999999999998863 22 2455667889999999999999999999887766665 5788888
Q ss_pred HHHHhhcCCHHHHHHHHHhcc
Q 047571 658 IDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 658 ~~~~~~~g~~~~A~~~~~~~~ 678 (681)
..+..+.|+.++|...|+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 899999999999999888764
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.15 E-value=0.15 Score=52.37 Aligned_cols=117 Identities=16% Similarity=0.100 Sum_probs=82.6
Q ss_pred cCCHHHHHHHhhhCCC--CChhhHHHH-HHHHHcCCChHHHHHHHHHHHhC--CCC-CCHHHHHHHHHHHhccCCHHHHH
Q 047571 562 CGFLECAKLVFDAVPV--KGSITWTAI-IEAYGYNDLCQEALSLFDKMRNG--GFT-PNHFTFKVLLSICNQAGFADEAC 635 (681)
Q Consensus 562 ~g~~~~a~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~--g~~-p~~~~~~~l~~~~~~~g~~~~A~ 635 (681)
..+.+.|.++++.+.. |+...|.-. .+.+...|+.++|++.|++.... ..+ .....+--+.+.+.-.++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4567888888888887 887766544 34456689999999999976642 111 14456667888889999999999
Q ss_pred HHHHHhhhcCCCCCChhHHHHH-HHHHhhcCCH-------HHHHHHHHhccCC
Q 047571 636 RIFNVMSRGYKIEALEEHYLIM-IDILTRFGRI-------EEAHRFREMSSSL 680 (681)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~~~~~ 680 (681)
+.|..+.+. ...+...|.-+ .-++...|+. ++|.+++.++|.+
T Consensus 326 ~~f~~L~~~--s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 326 EYFLRLLKE--SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHhc--cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999874 22233333333 3445677888 8999999888754
No 219
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.15 E-value=0.5 Score=37.47 Aligned_cols=141 Identities=10% Similarity=0.046 Sum_probs=76.4
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047571 489 CIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECA 568 (681)
Q Consensus 489 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 568 (681)
+.-.|.+++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+. .| ...+|++...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD----------is~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD----------ISKCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-----------GGG-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------chhhcchHHH
Confidence 34456677777777776652 33444555544443333434444444433321 11 1122333333
Q ss_pred HHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 047571 569 KLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIE 648 (681)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 648 (681)
...+-.+- .+....+..+.....+|+-|+-.+++.++.+.+ .+++....-+..+|.+.|+..++.+++.+.-+. |++
T Consensus 76 i~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 76 IECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp HHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 33322211 122345566778888999999999999988644 889999999999999999999999999988775 543
No 220
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.088 Score=48.43 Aligned_cols=100 Identities=14% Similarity=-0.001 Sum_probs=82.7
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhhhcCCCCCChhHH
Q 047571 578 KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAG---FADEACRIFNVMSRGYKIEALEEHY 654 (681)
Q Consensus 578 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~ 654 (681)
.|...|-.|...|...|+.+.|...|.+..+.- ++|+..+..+..++.... +..++.++|+++.+. -+-+....
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 357899999999999999999999999999863 568888888888765543 466889999988763 23357788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhccCC
Q 047571 655 LIMIDILTRFGRIEEAHRFREMSSSL 680 (681)
Q Consensus 655 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 680 (681)
..|...+...|++.+|...++.|.++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 88889999999999999999998764
No 221
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.10 E-value=0.06 Score=50.07 Aligned_cols=92 Identities=10% Similarity=-0.051 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhCCC--CCh----hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC---CHHHHHHHH
Q 047571 552 AAENIKMYGMCGFLECAKLVFDAVPV--KGS----ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP---NHFTFKVLL 622 (681)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~ 622 (681)
|...+..+.+.|++++|...|+.+.. |+. ..+--+...|...|++++|+..|+++.+.- +- ....+..+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~klg 224 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHHHHH
Confidence 33334444455667777766666655 442 355667788888999999999999988741 21 244555566
Q ss_pred HHHhccCCHHHHHHHHHHhhhc
Q 047571 623 SICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 623 ~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
..+...|++++|.++|+.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7788889999999999988775
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.99 E-value=0.054 Score=48.77 Aligned_cols=109 Identities=13% Similarity=0.144 Sum_probs=77.8
Q ss_pred HhhhhcC--CCCCccHHHHHHHHHHc---CCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccC-------------
Q 047571 163 KVFDESS--SESVYPWNALLRGAVIA---GKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGAS------------- 224 (681)
Q Consensus 163 ~~~~~~~--~~~~~~~~~ll~~~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------- 224 (681)
+.|...+ +++..+|-+.+..+... ++++++=....++.|++.|+.-|..+|+.||+.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444443 34455555555555433 44477777778889999999999999999999875532
Q ss_pred ---chhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCCh-HHHHHHHhcc
Q 047571 225 ---ALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKI-KLARRVFDET 271 (681)
Q Consensus 225 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~ 271 (681)
+-+-+.+++++|...|+.||..+-..|++++.+.+.. .+..+++-.|
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 3345788999999999999999999999999887753 3444444433
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.94 E-value=0.066 Score=45.10 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----hCCCCchhHHH
Q 047571 74 AIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRI-----NGLENNGFLRT 146 (681)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 146 (681)
++..++..+...|+++.|+.+++.+.... |.+...|..++.++...|+...|.+.|+.+.+ .|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 35556677778999999999999998775 55888999999999999999999999888753 48888876543
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.82 E-value=0.015 Score=42.56 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=47.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNG----GF-TPN-HFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778888888888888888888887643 21 122 56788899999999999999999987654
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.82 E-value=0.3 Score=48.09 Aligned_cols=70 Identities=7% Similarity=-0.064 Sum_probs=61.0
Q ss_pred CCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 047571 65 LPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNV----TTFNALITACVRTRSLVEGRLIHTHIRIN 136 (681)
Q Consensus 65 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (681)
....|.++..++.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|...|+.++|...++...+.
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567778899999999999999999999999998864 443 35999999999999999999999999876
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.76 E-value=0.024 Score=40.84 Aligned_cols=55 Identities=24% Similarity=0.119 Sum_probs=47.1
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 622 LSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
...|.+.+++++|.++++.+.+. .| +...+.....++.+.|++++|.+.+++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35788999999999999999874 33 467888899999999999999999988654
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.66 E-value=1 Score=43.86 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 609 (681)
-..+..++.++.-.|+.++|.+.+++|...
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 445677888999999999999999999986
No 228
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.52 E-value=0.53 Score=47.59 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=37.9
Q ss_pred HHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047571 557 KMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACR 636 (681)
Q Consensus 557 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 636 (681)
.+..++|+++.|.++.++.. +...|..|.......|+++-|.+.|++..+ |..|+-.|.-.|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 34455566666666555443 334566666666666666666666655443 3444444555555444444
Q ss_pred HHHHh
Q 047571 637 IFNVM 641 (681)
Q Consensus 637 ~~~~~ 641 (681)
+.+..
T Consensus 395 l~~~a 399 (443)
T PF04053_consen 395 LAKIA 399 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=95.43 E-value=0.63 Score=46.07 Aligned_cols=113 Identities=14% Similarity=0.058 Sum_probs=50.0
Q ss_pred hhHHHHHHHHhHh-CCCCCCHH-HHHHHHHHhcc---------ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047571 495 LDDALGVFRSMQL-SKHRPDSV-AMARMLSVSGQ---------LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCG 563 (681)
Q Consensus 495 ~~~A~~~~~~m~~-~g~~p~~~-~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 563 (681)
.+.|+.+|.+... +.+.|+.. .|..+-.++.. ..+..+|.+.-+...+.+ ..|+.....+..+..-.|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 5677778888772 22455543 33333222211 112333344444444433 223444444444444444
Q ss_pred CHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 564 FLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 564 ~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
+++.|..+|++... || ..+|-.....+.-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 45555555554443 33 22333333333444555555555555443
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.40 E-value=0.19 Score=40.58 Aligned_cols=50 Identities=6% Similarity=-0.083 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHhccccchHHHHHHHHHHHH-cCCCCChhHHHHHHHH
Q 047571 509 KHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLK-KDFASVPFVAAENIKM 558 (681)
Q Consensus 509 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 558 (681)
...|+..+..+++.+++..+++..|.++.+.+.+ .+++.+..+|..|++-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3567777777777777777788888877777665 3666666666666554
No 231
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.39 E-value=3 Score=40.83 Aligned_cols=126 Identities=10% Similarity=0.095 Sum_probs=77.7
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhH-HHHHHHHHc
Q 047571 517 MARMLSVSGQLKALKLGKEIHGQVLKKD-FASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSITW-TAIIEAYGY 592 (681)
Q Consensus 517 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~l~~~~~~ 592 (681)
|...+++..+...++.|+.+|.++.+.+ +.++..++++++..++ .|+...|..+|+--.. ||...| +-.+.-+..
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4445555556666777777777777776 4556666676666554 3556666666664333 554444 334555556
Q ss_pred CCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 593 NDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 593 ~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
-++-+.|..+|+..++. +..+ ...|..+++-=..-|+...+..+=+.|...
T Consensus 479 inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 479 INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 67777777777755543 2333 456777777667777777777766666654
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.30 E-value=0.14 Score=50.36 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH----FTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
..|+.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++..+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555542 3331 2355555555555555555555554443
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=95.26 E-value=0.21 Score=41.76 Aligned_cols=85 Identities=12% Similarity=-0.036 Sum_probs=56.9
Q ss_pred HHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047571 558 MYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEA 634 (681)
Q Consensus 558 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 634 (681)
-+-..|++++|..+|.-+.. -+..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 34456788888887775444 234445566666666778888888777766543 34555566677777778888888
Q ss_pred HHHHHHhhh
Q 047571 635 CRIFNVMSR 643 (681)
Q Consensus 635 ~~~~~~~~~ 643 (681)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 887777665
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.11 E-value=1.3 Score=36.79 Aligned_cols=117 Identities=17% Similarity=0.133 Sum_probs=57.0
Q ss_pred ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 047571 527 LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKM 606 (681)
Q Consensus 527 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 606 (681)
.+.......+++.+.+.+ ..++...+.++..|++.+ .++....++. ..+......++..|.+.+.++++.-++.++
T Consensus 20 ~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 20 RNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred CCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 334444444444444443 234445555555555442 2233333331 122233444566666666666666666665
Q ss_pred HhCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh
Q 047571 607 RNGGFTPNHFTFKVLLSICNQA-GFADEACRIFNVMSRGYKIEALEEHYLIMIDILTR 663 (681)
Q Consensus 607 ~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 663 (681)
.. +...+..+... ++++.|+++...- .+...|..++..+..
T Consensus 96 ~~---------~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 96 GN---------FKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKALLD 137 (140)
T ss_pred cC---------HHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHHHc
Confidence 32 12222333333 6777777777631 134566666665543
No 235
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.96 E-value=0.16 Score=48.49 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=40.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHH
Q 047571 78 DIQRFARQNKLKEALVILDYMDQQGIPVNV----TTFNALITACVRTRSLVEGRLIHTH 132 (681)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 132 (681)
--..+++.|+....+.+|+...+-|.. |. ..|..|.++|.-.+++.+|.++...
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 346789999999999999999988743 33 3466666677777788888776543
No 236
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.78 E-value=0.64 Score=38.86 Aligned_cols=133 Identities=15% Similarity=0.064 Sum_probs=84.9
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCCHHHHHHHhhhCCCCC--hhhHH-----HH
Q 047571 515 VAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVA-AENIKMYGMCGFLECAKLVFDAVPVKG--SITWT-----AI 586 (681)
Q Consensus 515 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~-----~l 586 (681)
..|..-+. ....++.++|..-|..+.+.|...-+... ..........|+-..|...|+++-... +.... --
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444433 35667888888888888888766544322 333455667788888888888776621 11111 11
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC
Q 047571 587 IEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA 649 (681)
Q Consensus 587 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 649 (681)
...+..+|-+++.....+.+...|-+--...-..|.-+-.+.|++..|...|+.+... ...|
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D-a~ap 200 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND-AQAP 200 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc-ccCc
Confidence 2345567888887777777766553334555667777778888888888888887765 3444
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=1.4 Score=41.13 Aligned_cols=150 Identities=12% Similarity=0.039 Sum_probs=98.6
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCCHHH
Q 047571 491 ENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK---DFASVPFVAAENIKMYGMCGFLEC 567 (681)
Q Consensus 491 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 567 (681)
..|+..+|-..++++.+. .+.|...+...-.+|...|+-..-...+++++.. +++....+...+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 457788888888888765 4666777777778888888888777777777643 222223333444555667789999
Q ss_pred HHHHhhhCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047571 568 AKLVFDAVPVK---GSITWTAIIEAYGYNDLCQEALSLFDKMRNG---GFTPNHFTFKVLLSICNQAGFADEACRIFNVM 641 (681)
Q Consensus 568 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (681)
|++.-++..+- |.-+-.++...+...|++.++.+...+-.+. +...-...|-+..-.+...+.++.|+++|+.-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 99888887772 2333345556666788888888876654432 11112234444555566678899999998753
No 238
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.58 E-value=0.9 Score=39.60 Aligned_cols=76 Identities=11% Similarity=0.008 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 047571 61 FPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRING 137 (681)
Q Consensus 61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 137 (681)
|.+++...|.-+.+||.+---+...|+++.|.+.|+...+.+..-+-...|.-|.. --.|++..|.+-+...-..+
T Consensus 88 ftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 88 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred hhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcC
Confidence 56666677777777777777777788888888888877766422222222222222 23466777766555554443
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.58 E-value=0.55 Score=37.10 Aligned_cols=87 Identities=16% Similarity=0.067 Sum_probs=57.9
Q ss_pred HHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCC
Q 047571 557 KMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH---FTFKVLLSICNQAGF 630 (681)
Q Consensus 557 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~ 630 (681)
-+....|+++.|.+.|.+... .....||.-..++.-+|+.++|++-+++..+..-.-.. ..|..=...|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 356677888888888876655 34667888888887788888888877777765322222 223333445667777
Q ss_pred HHHHHHHHHHhhh
Q 047571 631 ADEACRIFNVMSR 643 (681)
Q Consensus 631 ~~~A~~~~~~~~~ 643 (681)
.+.|..=|+...+
T Consensus 131 dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 131 DDAARADFEAAAQ 143 (175)
T ss_pred hHHHHHhHHHHHH
Confidence 7888877777665
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.56 E-value=1.3 Score=44.74 Aligned_cols=133 Identities=13% Similarity=0.116 Sum_probs=69.9
Q ss_pred HHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 047571 387 GYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDY 466 (681)
Q Consensus 387 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (681)
...-.++++.+.+..+.=.-.. ..+..-...++.-+.+.|..+.|+++..+-. .-.+...+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 3445666666655553111000 0113345666677777777777776643321 12345556777777
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc
Q 047571 467 SLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK 543 (681)
Q Consensus 467 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 543 (681)
|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ +..++-.|.-.|+.+...++.+.....
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 777766654 455777777777777777777777776643 344444555555555555555544443
No 241
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.54 E-value=8.1 Score=41.48 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=43.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhC-CCCChhHHHHHHHHHHh---
Q 047571 385 MSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQ-FLPNVSIITSLMIMYSK--- 460 (681)
Q Consensus 385 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 460 (681)
...+.-.|+++.|++.+-. ..+...|.+.+.+.+..+.-.+-.+... ..+.... -.|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4556678999999998877 3345667788877777654433222211 2221111 01222456777877776
Q ss_pred cCChHHHHHHHhhCCC
Q 047571 461 CGVLDYSLKLFDEMEV 476 (681)
Q Consensus 461 ~g~~~~a~~~~~~~~~ 476 (681)
..++.+|.+++--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4678888888776654
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.49 E-value=4.5 Score=38.40 Aligned_cols=127 Identities=9% Similarity=-0.025 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC-CC--hhhHHHHHHHHHc--CCChHHHHHHHHHHHhCCCCCCHH-HH----
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV-KG--SITWTAIIEAYGY--NDLCQEALSLFDKMRNGGFTPNHF-TF---- 618 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~-~~---- 618 (681)
+.++..-++.+.+.++.+++.+.+.+|.. .+ ...+...+..+.. ......|...++.+....+.|... ..
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~v 200 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLV 200 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 33343444444455556666665555544 11 2234444444321 233456666666666555555442 11
Q ss_pred HHHHHHHhccCC------HHHHHHHHHHhhhcCCCCCChhHHHHH-------HHHHhhcCCHHHHHHHHH
Q 047571 619 KVLLSICNQAGF------ADEACRIFNVMSRGYKIEALEEHYLIM-------IDILTRFGRIEEAHRFRE 675 (681)
Q Consensus 619 ~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~ 675 (681)
...+......++ .+...++++.+.+..+.+.+..+-.++ +..+.+.+++++|.++++
T Consensus 201 l~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 201 LTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 111222222222 455555666554444444454444433 344567889999999987
No 243
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.49 E-value=6.4 Score=43.79 Aligned_cols=173 Identities=14% Similarity=0.041 Sum_probs=96.3
Q ss_pred HHHHHhcCChhHHHHHHHHhHhC-----CCCCCHH--HHHHHHHHhcccc--chHHHHHHHHHHH--Hc---CCCCChhH
Q 047571 486 IDSCIENGRLDDALGVFRSMQLS-----KHRPDSV--AMARMLSVSGQLK--ALKLGKEIHGQVL--KK---DFASVPFV 551 (681)
Q Consensus 486 i~~~~~~~~~~~A~~~~~~m~~~-----g~~p~~~--~~~~ll~~~~~~~--~~~~a~~~~~~~~--~~---~~~~~~~~ 551 (681)
+-+-..+.++.+=+-++++++.. .+..|.. -|...+......| -++++..+.++-. .. =..|+...
T Consensus 858 ~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~ 937 (1265)
T KOG1920|consen 858 LVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEK 937 (1265)
T ss_pred HHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHH
Confidence 34445566777777777776632 1222222 2333333333333 3444443332210 00 02344444
Q ss_pred HHHHH----HHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHH
Q 047571 552 AAENI----KMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFT--FKVLLSIC 625 (681)
Q Consensus 552 ~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~l~~~~ 625 (681)
+.... ..+...+.+++|.-.|+..-. ..-.+.+|...|++.+|+.+..++.. .-+... -..|+.-+
T Consensus 938 ~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 938 QKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHH
Confidence 43333 333444666766666654332 23346667777788887777777643 223222 36788888
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 047571 626 NQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFRE 675 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 675 (681)
...+++-+|-++..+.... ...-+..|+++-.+++|.++..
T Consensus 1010 ~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHH
Confidence 9999999999988866553 3444566788888999988764
No 244
>PRK15331 chaperone protein SicA; Provisional
Probab=94.46 E-value=0.23 Score=41.47 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=33.4
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHH
Q 047571 592 YNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAH 671 (681)
Q Consensus 592 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 671 (681)
..|++++|..+|+-+.-.+ +-|..-|..|..+|-..+++++|+..|.....-.... +..+-....+|...|+.+.|+
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d--p~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND--YRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--CCccchHHHHHHHhCCHHHHH
Confidence 3455555555554444422 1133334444444444455555555444332211111 122333344444455555554
Q ss_pred HHHH
Q 047571 672 RFRE 675 (681)
Q Consensus 672 ~~~~ 675 (681)
..|+
T Consensus 126 ~~f~ 129 (165)
T PRK15331 126 QCFE 129 (165)
T ss_pred HHHH
Confidence 4443
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.44 E-value=1.3 Score=36.30 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=59.8
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHH
Q 047571 70 KNPRAIYKDIQRFARQNKLKEALVILDYMDQQG--IPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTK 147 (681)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (681)
.++..+..-.....+.|++++|.+.|+.+..+- -+-...+-..++.++.+.++++.|...++..++..+.....-|-.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 344456666777788899999999999987762 122445667788888889999999999988888765433344555
Q ss_pred HHHHhhc
Q 047571 148 LVKMYTS 154 (681)
Q Consensus 148 l~~~~~~ 154 (681)
.+.+++.
T Consensus 88 Y~~gL~~ 94 (142)
T PF13512_consen 88 YMRGLSY 94 (142)
T ss_pred HHHHHHH
Confidence 5555543
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=4.4 Score=37.61 Aligned_cols=140 Identities=15% Similarity=0.111 Sum_probs=92.3
Q ss_pred hccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC----hhhHHHHHHHHHcCCChHHH
Q 047571 524 SGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG----SITWTAIIEAYGYNDLCQEA 599 (681)
Q Consensus 524 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 599 (681)
....|+...+...++......-. +....-.++.+|...|+.+.|..++..++... ......-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34556666777777666654322 25566678889999999999999999888722 11222334455555555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc-CCCCCChhHHHHHHHHHhhcCCHH
Q 047571 600 LSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRG-YKIEALEEHYLIMIDILTRFGRIE 668 (681)
Q Consensus 600 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 668 (681)
..+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.++ .+.. |...-..|++.+.--|..+
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 555555554 45 7777778889999999999999877666543 3333 4566777777777777433
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.51 Score=45.42 Aligned_cols=93 Identities=14% Similarity=0.027 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHH
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMID 659 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~ 659 (681)
.+++.+.-+|.+.+++.+|++.-++.++.+ ++|......=..+|...|+++.|+..|+.+.+ +.|+ ...-+.|+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHH
Confidence 467778888888888888888888888865 66777777778888888888888888887765 3553 555566665
Q ss_pred HHhhcCCHHHH-HHHHHhc
Q 047571 660 ILTRFGRIEEA-HRFREMS 677 (681)
Q Consensus 660 ~~~~~g~~~~A-~~~~~~~ 677 (681)
+--+..+..+. .+++.+|
T Consensus 334 l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 55554444333 4455554
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=9.2 Score=40.89 Aligned_cols=215 Identities=9% Similarity=0.026 Sum_probs=112.1
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHH----HhhCC------------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047571 71 NPRAIYKDIQRFARQNKLKEALVILDY----MDQQG------------IPVNVTTFNALITACVRTRSLVEGRLIHTHIR 134 (681)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (681)
++...++++.++...+++-.-.-++.. +...+ ..........-|..+.+...+..|..+.+.-
T Consensus 282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~- 360 (933)
T KOG2114|consen 282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ- 360 (933)
T ss_pred CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc-
Confidence 344567788888888876443322222 22222 1223344556666677777777776665432
Q ss_pred HhCCCCch--hHHHHHHHHhhcCCChhHHHHhhhh-cCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChh
Q 047571 135 INGLENNG--FLRTKLVKMYTSCGSFEDAEKVFDE-SSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVY 211 (681)
Q Consensus 135 ~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 211 (681)
+..++. .....-...+-+.|++++|...+-+ +..-+ -..++.-|.... ....-..+++.+.+.|+. +..
T Consensus 361 --~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le---~s~Vi~kfLdaq--~IknLt~YLe~L~~~gla-~~d 432 (933)
T KOG2114|consen 361 --HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE---PSEVIKKFLDAQ--RIKNLTSYLEALHKKGLA-NSD 432 (933)
T ss_pred --CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC---hHHHHHHhcCHH--HHHHHHHHHHHHHHcccc-cch
Confidence 222221 1222333444567888888766543 22111 133444454444 556666667777777754 444
Q ss_pred hHHHHHHHhhccCchhhhHHHHHHHHHhCC-CCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcC
Q 047571 212 TFSCVIKSFAGASALMQGLKTHALLIKNGF-VDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNR 290 (681)
Q Consensus 212 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 290 (681)
.-..|+.+|.+.++.+.-.++.+.-. .|. .-| ....+..+.+.+-.++|..+-..... +......++ -..+
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ill---e~~~ 504 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK-HEWVLDILL---EDLH 504 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHH---HHhc
Confidence 45677888888887777666554433 221 112 22344455555555555554443322 233333332 2456
Q ss_pred ChHHHHHHHHHH
Q 047571 291 LRWEALDCARWM 302 (681)
Q Consensus 291 ~~~~a~~~~~~m 302 (681)
++++|++.+..|
T Consensus 505 ny~eAl~yi~sl 516 (933)
T KOG2114|consen 505 NYEEALRYISSL 516 (933)
T ss_pred CHHHHHHHHhcC
Confidence 677777776655
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=93.94 E-value=0.92 Score=44.94 Aligned_cols=144 Identities=8% Similarity=-0.077 Sum_probs=98.7
Q ss_pred chHHHHHHHHHHHH-cCCCCC-hhHHHHHHHHHHhc---------CCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCC
Q 047571 529 ALKLGKEIHGQVLK-KDFASV-PFVAAENIKMYGMC---------GFLECAKLVFDAVPV---KGSITWTAIIEAYGYND 594 (681)
Q Consensus 529 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 594 (681)
..+.|..+|.+... ....|+ ...|..+..++... ....+|.++-++..+ .|..+...+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 56788888888883 234554 55555555444332 234456666665555 45666666777777778
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 047571 595 LCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRF 673 (681)
Q Consensus 595 ~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 673 (681)
+++.|..+|++.... .| ...+|......+.-.|+.++|.+.+++..+-.....-.......++.|+..+ +++|+++
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 899999999999985 55 5677888888888999999999999976543233333566667777888665 7788876
Q ss_pred HH
Q 047571 674 RE 675 (681)
Q Consensus 674 ~~ 675 (681)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 54
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.70 E-value=3.7 Score=42.32 Aligned_cols=85 Identities=15% Similarity=0.095 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHhhhCCC-------CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-Hhc
Q 047571 556 IKMYGMCGFLECAKLVFDAVPV-------KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI-CNQ 627 (681)
Q Consensus 556 ~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~ 627 (681)
.+.+...|++++|.+.|++... -....+--+...+....++++|.+.|.++.+.. .-+..+|.-+..+ +..
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence 3445555666666666654332 112244456667777889999999999988854 3345555544443 456
Q ss_pred cCCH-------HHHHHHHHHh
Q 047571 628 AGFA-------DEACRIFNVM 641 (681)
Q Consensus 628 ~g~~-------~~A~~~~~~~ 641 (681)
.|+. ++|.++|.++
T Consensus 353 l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hccchhhhhhHHHHHHHHHHH
Confidence 6777 7788888766
No 251
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.67 E-value=3 Score=33.31 Aligned_cols=136 Identities=12% Similarity=0.117 Sum_probs=67.4
Q ss_pred HhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHH---HHHHHHHHhcCChH
Q 047571 389 VSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSII---TSLMIMYSKCGVLD 465 (681)
Q Consensus 389 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~ 465 (681)
.-.|..++..+++.+.... .+..-|+.+|--....-+-+-..+.+ ..-|--.|.... ..++.+|.+.|..
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~L---dsIGkiFDis~C~NlKrVi~C~~~~n~~- 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETL---DSIGKIFDISKCGNLKRVIECYAKRNKL- 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHH---HHHGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHH---HHHhhhcCchhhcchHHHHHHHHHhcch-
Confidence 3456666777776666554 24444555444333333333333333 233322222221 2334444443332
Q ss_pred HHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571 466 YSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDF 545 (681)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 545 (681)
.......+..+..+|+-+.-.+++.++... -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 223344566677778888777788777653 367777777777788888888888777777766664
No 252
>PRK09687 putative lyase; Provisional
Probab=93.59 E-value=6.7 Score=37.14 Aligned_cols=216 Identities=8% Similarity=-0.030 Sum_probs=112.0
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh----HHHHHHHhhC--CCCCcchHH
Q 047571 410 RPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVL----DYSLKLFDEM--EVRNVISWT 483 (681)
Q Consensus 410 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~--~~~~~~~~~ 483 (681)
.+|.......+.++...|..+-... +..+.. .++...-...+.++.+.|+. +++...+..+ .+++...-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~-l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRL-AIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHH-HHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHH
Confidence 3566666777777777665333333 333332 34555555666667776653 4566666654 345655555
Q ss_pred HHHHHHHhcCCh-----hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571 484 AMIDSCIENGRL-----DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM 558 (681)
Q Consensus 484 ~li~~~~~~~~~-----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (681)
..+.++...+.. ..+...+..... .++...-...+.+++..++ ..+...+-.+.+ .++..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 555555554321 223333333332 3344555555666666554 344444444443 3344555555555
Q ss_pred HHhcC-CHHHHHHH-hhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047571 559 YGMCG-FLECAKLV-FDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACR 636 (681)
Q Consensus 559 ~~~~g-~~~~a~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 636 (681)
+++.+ ....+... ...+..++...-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+. +|+.
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHH
Confidence 55543 12233333 333333555566666666666666 45555555555532 1 233556666666663 5666
Q ss_pred HHHHhhh
Q 047571 637 IFNVMSR 643 (681)
Q Consensus 637 ~~~~~~~ 643 (681)
.+..+.+
T Consensus 256 ~L~~l~~ 262 (280)
T PRK09687 256 VLDTLLY 262 (280)
T ss_pred HHHHHHh
Confidence 6666554
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.52 E-value=1.2 Score=42.14 Aligned_cols=220 Identities=10% Similarity=0.034 Sum_probs=127.6
Q ss_pred hhccCChhHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCChHHHHHHHhhC----CC---C--CcchHHHHHHHHHh
Q 047571 423 CSQLKALNHGKEIHAYAVKN--QFLPNVSIITSLMIMYSKCGVLDYSLKLFDEM----EV---R--NVISWTAMIDSCIE 491 (681)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~---~--~~~~~~~li~~~~~ 491 (681)
+....+.++|...|...... +...-..+|..+..+.++.|.++++...--.- .+ . -...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888877765542 22234456777888888888888776543211 11 1 12345555555555
Q ss_pred cCChhHHHHHHHHhHh-CCCCC---CHHHHHHHHHHhccccchHHHHHHHHHHHHcC-----CCCChhHHHHHHHHHHhc
Q 047571 492 NGRLDDALGVFRSMQL-SKHRP---DSVAMARMLSVSGQLKALKLGKEIHGQVLKKD-----FASVPFVAAENIKMYGMC 562 (681)
Q Consensus 492 ~~~~~~A~~~~~~m~~-~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 562 (681)
..++.+++.+-+.-.. .|..| ......++-.++.-.+.++++.+.|+...+.. ......++..|...|+..
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 5555555555443332 12222 12234445666777778888888888777532 122355677788888888
Q ss_pred CCHHHHHHHhhhCCC-------CCh-hhH-----HHHHHHHHcCCChHHHHHHHHHHH----hCCCCC-CHHHHHHHHHH
Q 047571 563 GFLECAKLVFDAVPV-------KGS-ITW-----TAIIEAYGYNDLCQEALSLFDKMR----NGGFTP-NHFTFKVLLSI 624 (681)
Q Consensus 563 g~~~~a~~~~~~~~~-------~~~-~~~-----~~l~~~~~~~~~~~~a~~~~~~m~----~~g~~p-~~~~~~~l~~~ 624 (681)
.++++|.-+..+... .|. .-| -.|..++...|....|.+.-++.. ..|-.| -......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888877666554333 221 112 223445556677666666666543 334333 33455667777
Q ss_pred HhccCCHHHHHHHHHHhh
Q 047571 625 CNQAGFADEACRIFNVMS 642 (681)
Q Consensus 625 ~~~~g~~~~A~~~~~~~~ 642 (681)
|...|+.+.|..-++...
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 888888888777777544
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.47 E-value=0.31 Score=30.63 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=21.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVL 621 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 621 (681)
+|..+...|...|++++|+++|++.++.. +-|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45556666666666666666666666642 2244444433
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.39 E-value=2.2 Score=40.49 Aligned_cols=221 Identities=9% Similarity=0.018 Sum_probs=136.8
Q ss_pred HHhCCChHHHHHHHHHHHHc--CcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH--hCCCCCh---hHHHHHHHHHHh
Q 047571 388 YVSNGRLEQALRSIAWMQQE--GFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVK--NQFLPNV---SIITSLMIMYSK 460 (681)
Q Consensus 388 ~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~---~~~~~l~~~~~~ 460 (681)
+....+.++|+..+.+-..+ ...-.-.+|..+..+.++.|.++++...--.-+. ....... ..|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888998888776553 1222345677788888888888877654332222 1111122 223334444444
Q ss_pred cCChHHHHHHHhhCCC-CCc-------chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-----CHHHHHHHHHHhccc
Q 047571 461 CGVLDYSLKLFDEMEV-RNV-------ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRP-----DSVAMARMLSVSGQL 527 (681)
Q Consensus 461 ~g~~~~a~~~~~~~~~-~~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~ 527 (681)
.-++.+++.+-+.-.. |.. ....++..++...+.++++++.|+...+--... ....+..+-+.+...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 4455555554433221 211 233456677888888999999999876532222 234678888899999
Q ss_pred cchHHHHHHHHHHHH----cCCCCChhHH-----HHHHHHHHhcCCHHHHHHHhhhCCC-----CCh----hhHHHHHHH
Q 047571 528 KALKLGKEIHGQVLK----KDFASVPFVA-----AENIKMYGMCGFLECAKLVFDAVPV-----KGS----ITWTAIIEA 589 (681)
Q Consensus 528 ~~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~----~~~~~l~~~ 589 (681)
.|++++.-+..+..+ .++.--..-| -.+..++-..|.+..|.+.-++..+ -|. .....+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999877766553 2322222222 2344566777888888888776555 332 344567888
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 047571 590 YGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 590 ~~~~~~~~~a~~~~~~m~~ 608 (681)
|...|+.+.|..-|++...
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 9999999999988888653
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.34 E-value=1.9 Score=34.17 Aligned_cols=90 Identities=13% Similarity=-0.012 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchh---HHHHHHHHh
Q 047571 76 YKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGF---LRTKLVKMY 152 (681)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~ 152 (681)
..-.-+++..|+.+.|++.|.+.... .|-..+.||.-.+++.-.|+.++|+.-+++..+..-..... .|..-...|
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34456788899999999999998876 35688999999999999999999999998888764233322 233344456
Q ss_pred hcCCChhHHHHhhh
Q 047571 153 TSCGSFEDAEKVFD 166 (681)
Q Consensus 153 ~~~g~~~~a~~~~~ 166 (681)
...|+.+.|..-|+
T Consensus 126 Rl~g~dd~AR~DFe 139 (175)
T KOG4555|consen 126 RLLGNDDAARADFE 139 (175)
T ss_pred HHhCchHHHHHhHH
Confidence 66788888877665
No 257
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.33 E-value=14 Score=39.88 Aligned_cols=269 Identities=8% Similarity=-0.042 Sum_probs=131.6
Q ss_pred chHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhcc
Q 047571 347 LFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQL 426 (681)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 426 (681)
...-..-+..+.+.+++......+..- ..+...-.....+....|+.++|....+.+-..|.. ....+..++..+.+.
T Consensus 99 ~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 99 RSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHc
Confidence 333344455556667777776633222 235555566677777788877777666666554422 333444455544443
Q ss_pred CChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhH
Q 047571 427 KALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQ 506 (681)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 506 (681)
|.+. +..++.. +......|+...|..+...+..........++..+. +...+...+..
T Consensus 177 g~lt----------------~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~-- 234 (644)
T PRK11619 177 GKQD----------------PLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFART-- 234 (644)
T ss_pred CCCC----------------HHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhc--
Confidence 3322 2222222 223334555666655555552211112222222221 12222221111
Q ss_pred hCCCCCCHHHHHHHHHHhc--cccchHHHHHHHHHHHHc-CCCCC--hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC
Q 047571 507 LSKHRPDSVAMARMLSVSG--QLKALKLGKEIHGQVLKK-DFASV--PFVAAENIKMYGMCGFLECAKLVFDAVPV--KG 579 (681)
Q Consensus 507 ~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~ 579 (681)
+.|+...-..++-++. ...+.+.|...+...... ++.+. ..+...+.......+...++...++.... .+
T Consensus 235 ---~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~ 311 (644)
T PRK11619 235 ---TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQS 311 (644)
T ss_pred ---cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCC
Confidence 1122211111111111 123446666666655332 22222 12223333333333225566666665544 24
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.....--+......++++.+...+..|-... .-...-...+..++...|+.++|..+|+.+..
T Consensus 312 ~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 312 TSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4444444555557888888888888875432 22334445677777778999999999987743
No 258
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.24 E-value=9.2 Score=37.67 Aligned_cols=76 Identities=8% Similarity=0.141 Sum_probs=50.8
Q ss_pred CCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 047571 63 SSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLE 139 (681)
Q Consensus 63 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 139 (681)
..+...|.|..+|-.+++-+..++..++..+++++|... ++.-..++..-+.+-....++..+..+|..-......
T Consensus 33 erIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 33 ERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 344455667777888888888888888888888888654 3344455666666555566777777777766655433
No 259
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.02 E-value=2.3 Score=40.44 Aligned_cols=64 Identities=6% Similarity=-0.018 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhHhCCCCCCHH--HHHHHHHHhcccc--chHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571 495 LDDALGVFRSMQLSKHRPDSV--AMARMLSVSGQLK--ALKLGKEIHGQVLKKDFASVPFVAAENIKM 558 (681)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (681)
.+.++.+|+.+.+.|+..+.. ....++..+.... ...++.++++.+.+.|+++....|..+.-+
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 356677788888877665433 3444444443332 255778888888888888777766555433
No 260
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.93 E-value=4.7 Score=33.45 Aligned_cols=126 Identities=10% Similarity=0.065 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047571 482 WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM 561 (681)
Q Consensus 482 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 561 (681)
...++..+...+.......+++.+...+ ..+....+.++..|++... .....++.. ..+..-...+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3445555555566666666666666554 2444555666666654422 222222221 1122233445566666
Q ss_pred cCCHHHHHHHhhhCCCCChhhHHHHHHHHHcC-CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571 562 CGFLECAKLVFDAVPVKGSITWTAIIEAYGYN-DLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN 626 (681)
Q Consensus 562 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 626 (681)
.+.++++..++.++.. |...+..+... ++.+.|.+.+.+ ..+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 6666666666655432 33333334444 677777776664 124556666665554
No 261
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.75 E-value=3 Score=39.67 Aligned_cols=127 Identities=12% Similarity=0.157 Sum_probs=64.9
Q ss_pred hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc--c----cchHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCH
Q 047571 495 LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ--L----KALKLGKEIHGQVLKKDFAS---VPFVAAENIKMYGMCGFL 565 (681)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 565 (681)
+++.+.+++.|.+.|++-+..+|-+....... . .....+..+++.|.+...-. +...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788999999998888777664333322 2 23567788888888753221 12222222211 22332
Q ss_pred ----HHHHHHhhhCCC-----CC-hhhHHHHHHHHHcCCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047571 566 ----ECAKLVFDAVPV-----KG-SITWTAIIEAYGYNDL--CQEALSLFDKMRNGGFTPNHFTFKVLLS 623 (681)
Q Consensus 566 ----~~a~~~~~~~~~-----~~-~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 623 (681)
++++.+++.+.. .| ......++..+..... ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 334444443333 11 1222222222221111 3456666777777776666555554443
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.41 E-value=3.3 Score=33.94 Aligned_cols=55 Identities=16% Similarity=0.031 Sum_probs=34.6
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571 555 NIKMYGMCGFLECAKLVFDAVPV--KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 609 (681)
-.....+.|++++|.+.|+.+.. |. ...--.++.+|...+++++|+..+++.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444566777777777776666 22 223445666777777777777777777764
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.40 E-value=0.43 Score=29.97 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 047571 73 RAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFN 111 (681)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (681)
.++..+...|.+.|++++|+++|++..+.. |-|...+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~ 39 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHH
Confidence 456667777777777777777777776653 23444333
No 264
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.25 E-value=1.5 Score=40.78 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=42.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh----cCCCCCChhHHHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR----GYKIEALEEHYLIM 657 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~l 657 (681)
++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34445555555566666666666665531 22555566666666666666666665555433 34555555544444
Q ss_pred HHH
Q 047571 658 IDI 660 (681)
Q Consensus 658 ~~~ 660 (681)
.++
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 265
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.14 E-value=1 Score=41.16 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=26.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 586 IIEAYGYNDLCQEALSLFDKMRNGG-FTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 586 l~~~~~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
|..++...|++++|..+|..+.+.- -.| -+..+.-|.....+.|+.++|..+|+++.+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3444444455555555554444421 001 1233444444455555555555555555443
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=20 Score=38.57 Aligned_cols=183 Identities=12% Similarity=0.021 Sum_probs=102.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHH----HHhC----------C--CCchhHHHHHHHHhhcCCChhHHHHhhhhcC
Q 047571 106 NVTTFNALITACVRTRSLVEGRLIHTHI----RING----------L--ENNGFLRTKLVKMYTSCGSFEDAEKVFDESS 169 (681)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~----------~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 169 (681)
+....+.++.++...+.+-.-.-++... ...+ . ....-....-+..+++...++.|..+-+.-.
T Consensus 282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~ 361 (933)
T KOG2114|consen 282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQH 361 (933)
T ss_pred CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 3445677777777776654433333332 2222 0 1112233445666777777777777766432
Q ss_pred CCCCccHHHHH----HHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCc
Q 047571 170 SESVYPWNALL----RGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYL 245 (681)
Q Consensus 170 ~~~~~~~~~ll----~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 245 (681)
.+ ...-..+. .-+.+.| ++++|...|-+-... +.| ..++.-|....+...-..+++.+.+.|+...
T Consensus 362 ~d-~d~~~~i~~kYgd~Ly~Kg--df~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~- 431 (933)
T KOG2114|consen 362 LD-EDTLAEIHRKYGDYLYGKG--DFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLANS- 431 (933)
T ss_pred CC-HHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccccc-
Confidence 22 11222222 2233445 888888887764322 223 2355666666667777777888888886443
Q ss_pred HHHhHHHHHHHhcCChHHHHHHHhccCCCCh-hhHHHHHHHHHhcCChHHHHHH
Q 047571 246 ILRTSLIDMYFKCGKIKLARRVFDETGDRDI-VVWGSMIAGFAHNRLRWEALDC 298 (681)
Q Consensus 246 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~ 298 (681)
..-+.|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.++|..+
T Consensus 432 dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 432 DHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 4446788899999988888887776552111 1233444444445545554444
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.82 E-value=10 Score=34.64 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=37.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 587 IEAYGYNDLCQEALSLFDKMRNGGFTPNH---FTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 587 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.+-|.+.|.+..|..-+++|++. .+-.. ..+-.+..+|...|..++|...-.-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 45567788888888888888876 33322 3455566778888888887777665543
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.74 E-value=4.7 Score=40.34 Aligned_cols=145 Identities=10% Similarity=0.058 Sum_probs=88.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047571 484 AMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCG 563 (681)
Q Consensus 484 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 563 (681)
.+|.--.+..+...-++.-++..+ +.||..+.-.+ -+-.......++.+++++..+.+-. . +.+..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~s~ 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYIL-LAEEEASTIVEAEELLRQAVKAGEA----S-------LGKSQ 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhh-cccccccCHHHHHHHHHHHHHHHHH----h-------hchhh
Confidence 344444566777777777777776 35655433222 2333445678888888887765311 0 11100
Q ss_pred CHHHHHHHhhhCCCCC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHH
Q 047571 564 FLECAKLVFDAVPVKG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP--NHFTFKVLLSICNQAGFADEACRI 637 (681)
Q Consensus 564 ~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 637 (681)
..+..-..++.....+ ..+-..+..++.+.|+.++|++.+++|.+.. ++ +......|+.++...+.+.++..+
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 0011011111111122 3333456666778999999999999998753 33 456788999999999999999999
Q ss_pred HHHhhh
Q 047571 638 FNVMSR 643 (681)
Q Consensus 638 ~~~~~~ 643 (681)
+.+..+
T Consensus 318 L~kYdD 323 (539)
T PF04184_consen 318 LAKYDD 323 (539)
T ss_pred HHHhcc
Confidence 997644
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.68 E-value=9.7 Score=34.25 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 047571 380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYS 459 (681)
Q Consensus 380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (681)
.|.....+|-...++++|...+.+..+. ..-+...|. ..+.++.|.-+.+++.+. +--...|+.-..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444555666666777766655554321 111111111 112233444444444332 112234455556666
Q ss_pred hcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhH
Q 047571 460 KCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQ 506 (681)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 506 (681)
.+|.++-|-..+++.-+ ..+..++++|+++|++..
T Consensus 103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRAL 137 (308)
T ss_pred HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHH
Confidence 77766666555554321 223445666666666554
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.67 E-value=0.32 Score=28.94 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=16.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHh
Q 047571 654 YLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 654 ~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
|..|.++|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 56677777777777777777776
No 271
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.63 E-value=0.12 Score=43.25 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=64.8
Q ss_pred HHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHH
Q 047571 215 CVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWE 294 (681)
Q Consensus 215 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 294 (681)
.++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35777888889999999999999887777788999999999999888899888884333 334566777777777777
Q ss_pred HHHHHHHH
Q 047571 295 ALDCARWM 302 (681)
Q Consensus 295 a~~~~~~m 302 (681)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77776654
No 272
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.53 E-value=7.9 Score=32.94 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHh
Q 047571 232 THALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFD 269 (681)
Q Consensus 232 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 269 (681)
.++.+.+.+++|+...+..+++.+.+.|++..-..++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 34444455566666666666666666666555444443
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.48 E-value=0.42 Score=28.38 Aligned_cols=23 Identities=9% Similarity=0.239 Sum_probs=11.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHH
Q 047571 583 WTAIIEAYGYNDLCQEALSLFDK 605 (681)
Q Consensus 583 ~~~l~~~~~~~~~~~~a~~~~~~ 605 (681)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555555555555555554
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.35 E-value=2.6 Score=36.62 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=32.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH--FTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.+..+...|.+.|+.+.|++.|.++.+....+.. ..+-.++......|++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555554333322 3344555555555555555555555433
No 275
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.29 E-value=2 Score=41.64 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=40.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc
Q 047571 480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK 543 (681)
Q Consensus 480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 543 (681)
.++..+..+|.+.+++.+|++.-.+....+ ++|....-.--.+|...|+++.|+..|.++++.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 356666667777777777777777776654 445555555556666666666666666666654
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.10 E-value=2.2 Score=39.71 Aligned_cols=76 Identities=11% Similarity=0.118 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----hCCCCchhHHHHHH
Q 047571 75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRI-----NGLENNGFLRTKLV 149 (681)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 149 (681)
+..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|...|+.+.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4455667777777777777777777664 45777777777777777777777777777665 36677666655554
Q ss_pred HH
Q 047571 150 KM 151 (681)
Q Consensus 150 ~~ 151 (681)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 277
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.07 E-value=8.9 Score=32.65 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=35.2
Q ss_pred HhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047571 248 RTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIR 304 (681)
Q Consensus 248 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 304 (681)
+..+++.+...|++-+|+++.+....-+......++.+-.+.++..--..+++-..+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566677777788887777765554445555666666666665555555554444
No 278
>PRK09687 putative lyase; Provisional
Probab=90.84 E-value=15 Score=34.84 Aligned_cols=138 Identities=11% Similarity=-0.033 Sum_probs=72.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcccc-chHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047571 478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLK-ALKLGKEIHGQVLKKDFASVPFVAAENI 556 (681)
Q Consensus 478 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 556 (681)
+..+-...+.++.+.++ ++++..+-.+.+ .++...-...+.++...+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33333344444444443 334444444443 233333333333444332 12233333333332 34556666667
Q ss_pred HHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 047571 557 KMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ 627 (681)
Q Consensus 557 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 627 (681)
.++++.|+......+++.+..++ .....+.++...|.. +|+..+.++.+. .||...-...+++|.+
T Consensus 214 ~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 214 IGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 77777777544444444444444 234567777777874 788888888874 4577776666666643
No 279
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.77 E-value=14 Score=34.44 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=45.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCC
Q 047571 114 ITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSE 171 (681)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 171 (681)
.......|++..|..+|+...... +-+...--.+..+|...|+.+.|..+++.++..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 345567888999999999888776 444566677888999999999999999988743
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.58 E-value=9.7 Score=32.23 Aligned_cols=132 Identities=15% Similarity=0.066 Sum_probs=85.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHHHHHHHHHHHHcCCCCChh-HHHHH--H
Q 047571 481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPF-VAAEN--I 556 (681)
Q Consensus 481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~ 556 (681)
.|...+. +.+.++.++|+.-|.++.+-|...-.. ....+.......|+...|...|+++-+....|-+. -...| .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3443333 466788899999999998877543222 22223344567788999999999887754444322 11112 2
Q ss_pred HHHHhcCCHHHHHHHhhhCCCCC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 047571 557 KMYGMCGFLECAKLVFDAVPVKG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP 613 (681)
Q Consensus 557 ~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 613 (681)
.++...|-++......+.+..+. ...-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 34566788888888887776643 2234556666778999999999999887654445
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.52 E-value=21 Score=36.02 Aligned_cols=167 Identities=14% Similarity=0.036 Sum_probs=98.4
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHH-HHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchH
Q 047571 453 SLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMI-DSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALK 531 (681)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 531 (681)
.++.-..+..+.+.-.+.-++..+-+..+-.+++ -+--......+|.++|++..+.|- ..+ .+.....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE----~~l-------g~s~~~~ 241 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGE----ASL-------GKSQFLQ 241 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHH----Hhh-------chhhhhh
Confidence 3444455556666666666665553333222222 222234568899999999876541 111 1111111
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC---hhhHHHHHHHHHcCCChHHHHHHHHHH
Q 047571 532 LGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG---SITWTAIIEAYGYNDLCQEALSLFDKM 606 (681)
Q Consensus 532 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m 606 (681)
..-..++...+....+-..+-..+..+..+.|+.++|.+.++++.+ |. ......|+.++...+.+.++..++.+-
T Consensus 242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1112223333333444455556788888899999999999998875 33 335677999999999999999999997
Q ss_pred HhCCCCCCH-HHHHHHHHHHhccCC
Q 047571 607 RNGGFTPNH-FTFKVLLSICNQAGF 630 (681)
Q Consensus 607 ~~~g~~p~~-~~~~~l~~~~~~~g~ 630 (681)
.+-..+.+. .+|+..+-.+...|+
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGD 346 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhcc
Confidence 654433333 446655444444443
No 282
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.23 E-value=20 Score=38.51 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=41.4
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh-------hHHHHHHHHHHHhCCCCch
Q 047571 72 PRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSL-------VEGRLIHTHIRINGLENNG 142 (681)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~ 142 (681)
......+|--|.|.|++++|.++.+..... .......|...+..+....+- +....-|++..+.....|+
T Consensus 111 ~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 111 GDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp TEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 334567788888899999998888655443 455667778888888765332 2344445555444332244
No 283
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.87 E-value=57 Score=40.01 Aligned_cols=287 Identities=13% Similarity=0.054 Sum_probs=138.7
Q ss_pred HHHHHHhcCCHHHHHHHHhh-cCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhH
Q 047571 353 LVDMYCKCRDMNSAWRVFYE-TEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNH 431 (681)
Q Consensus 353 l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 431 (681)
+...|...+++|...-+... ..+++ .+ .-|--....|++..|..-|+.+...+ ++...+++-++......|.+..
T Consensus 1426 lq~lY~~i~dpDgV~Gv~~~r~a~~s--l~-~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t 1501 (2382)
T KOG0890|consen 1426 LQNLYGSIHDPDGVEGVSARRFADPS--LY-QQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLST 1501 (2382)
T ss_pred HHHHHHhcCCcchhhhHHHHhhcCcc--HH-HHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhH
Confidence 33355666666555555442 22221 12 22333556788888888888887753 2235667766666666666666
Q ss_pred HHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHH--HHHHHhcCChhH--HHHHHHHhH
Q 047571 432 GKEIHAYAVKNQFLPNVSII-TSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAM--IDSCIENGRLDD--ALGVFRSMQ 506 (681)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~--A~~~~~~m~ 506 (681)
+....+...... .+....+ +.=+.+-.+.++++..+.... ..+..+|.+. ...+.+..+-+. -.+..+-++
T Consensus 1502 ~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r 1577 (2382)
T KOG0890|consen 1502 EILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSR 1577 (2382)
T ss_pred HHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence 655444433322 2222222 222444467777777777666 4455555544 222222222111 112222222
Q ss_pred hCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CChh
Q 047571 507 LSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KGSI 581 (681)
Q Consensus 507 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~ 581 (681)
+.-+ .-+.+|+..|.+.. .|..+++...-+.-....+. +..... .+..
T Consensus 1578 ~~~i--------~~lsa~s~~~Sy~~------------------~Y~~~~kLH~l~el~~~~~~-l~~~s~~~~s~~~sd 1630 (2382)
T KOG0890|consen 1578 ELVI--------ENLSACSIEGSYVR------------------SYEILMKLHLLLELENSIEE-LKKVSYDEDSANNSD 1630 (2382)
T ss_pred HHhh--------hhHHHhhccchHHH------------------HHHHHHHHHHHHHHHHHHHH-hhccCccccccccch
Confidence 2111 11222222222112 22222222222211111111 111111 1111
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHH-HHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDK-MRNG----GFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYL 655 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~-m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 655 (681)
-|..-+..-....+..+-+-.+++ +... +..- -..+|....+...++|.++.|...+-...+. . .| ..+.
T Consensus 1631 ~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~-r-~~--~i~~ 1706 (2382)
T KOG0890|consen 1631 NWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES-R-LP--EIVL 1706 (2382)
T ss_pred hHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc-c-cc--hHHH
Confidence 222222111111112221111221 2221 2222 3578888888999999999999888776664 2 33 6677
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcc
Q 047571 656 IMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 656 ~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
...+.++..|+...|+.++++..
T Consensus 1707 E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1707 ERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHHH
Confidence 78888999999999999988754
No 284
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.86 E-value=15 Score=33.46 Aligned_cols=83 Identities=10% Similarity=-0.010 Sum_probs=61.3
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 047571 71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQG--IPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKL 148 (681)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (681)
++..+..-...-.+.|++++|.+.|+.+..+. -+-...+-..++-++-+.++++.|....+...+.-+.....-|-.-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 44556666777888999999999999998663 2335566777788888999999999999998887544444445555
Q ss_pred HHHhh
Q 047571 149 VKMYT 153 (681)
Q Consensus 149 ~~~~~ 153 (681)
|.+++
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 55555
No 285
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.79 E-value=15 Score=33.32 Aligned_cols=214 Identities=15% Similarity=0.064 Sum_probs=113.7
Q ss_pred CChhHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcchHHHHHHHHHhcCChhHHHH
Q 047571 427 KALNHGKEIHAYAVKNQFL-PNVSIITSLMIMYSKCGVLDYSLKLFDEMEV-----RNVISWTAMIDSCIENGRLDDALG 500 (681)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~ 500 (681)
+....+...+......... .....+......+...+....+...+..... .....+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444444555444443322 1245666666777777777777777666542 233455555666666777777777
Q ss_pred HHHHhHhCCCCCCHHHHHHHHH-HhccccchHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 047571 501 VFRSMQLSKHRPDSVAMARMLS-VSGQLKALKLGKEIHGQVLKKDF--ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV 577 (681)
Q Consensus 501 ~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 577 (681)
.+.........+. ........ .+...|+.+.+...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777766443331 11222222 56667777777777776644211 11222333333334455666666666655544
Q ss_pred --CC--hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 578 --KG--SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN-HFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 578 --~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
++ ...+..+...+...++++.|...+...... .|+ ...+..+...+...|..+++...+....+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 344555555555666666666666666553 232 33344444444445556666666555544
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.69 E-value=2.4 Score=31.65 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 047571 595 LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMID 659 (681)
Q Consensus 595 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 659 (681)
|.=++.+-++.+....+-|++......+.+|.+.+|+..|+++++.++.+-+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44456677777777788899999999999999999999999999988754332 3445665544
No 287
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.56 E-value=25 Score=35.48 Aligned_cols=51 Identities=18% Similarity=0.097 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 593 NDLCQEALSLFDKMRNG-GFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 593 ~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
..+.+..+.+..+.... |..--...+.-+-.-|....++++|++++..+.+
T Consensus 182 ~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 182 GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 34666777777766654 3233345555666778888899999999987776
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.46 E-value=23 Score=34.99 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=29.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP---NHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+|..++..+.+.|+++.|...+.++...+... .+.....-+..+...|+..+|+..++...+
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555432111 222222333444555555555555554443
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.07 E-value=13 Score=32.27 Aligned_cols=84 Identities=18% Similarity=0.024 Sum_probs=34.6
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCC
Q 047571 589 AYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGR 666 (681)
Q Consensus 589 ~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 666 (681)
.+...|++++|+.-++.....-..-+ ..+--.|.......|.+|+|...++..... +.. ......-+++|...|+
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~--~~~~elrGDill~kg~ 174 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWA--AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHH--HHHHHHhhhHHHHcCc
Confidence 34445555555555554443110000 111122334444555555555555533322 111 1223333455555555
Q ss_pred HHHHHHHHH
Q 047571 667 IEEAHRFRE 675 (681)
Q Consensus 667 ~~~A~~~~~ 675 (681)
.++|+.-++
T Consensus 175 k~~Ar~ay~ 183 (207)
T COG2976 175 KQEARAAYE 183 (207)
T ss_pred hHHHHHHHH
Confidence 555555444
No 290
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.99 E-value=18 Score=32.92 Aligned_cols=218 Identities=13% Similarity=0.034 Sum_probs=108.9
Q ss_pred CChHHHHHHHHHHHHcCcC-CCHHHHHHHHHHhhccCChhHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCChHHHHH
Q 047571 392 GRLEQALRSIAWMQQEGFR-PDVVTVATVIPVCSQLKALNHGKEIHAYAVKN-QFLPNVSIITSLMIMYSKCGVLDYSLK 469 (681)
Q Consensus 392 ~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (681)
+....+...+......... .....+......+...+....+...+...... ........+......+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444443221 12344555555556666666666665555442 223344445555555555666666666
Q ss_pred HHhhCCC--CCc-chHHHHHH-HHHhcCChhHHHHHHHHhHhCCC--CCCHHHHHHHHHHhccccchHHHHHHHHHHHHc
Q 047571 470 LFDEMEV--RNV-ISWTAMID-SCIENGRLDDALGVFRSMQLSKH--RPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK 543 (681)
Q Consensus 470 ~~~~~~~--~~~-~~~~~li~-~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 543 (681)
.+..... ++. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+....+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 6665554 211 12222222 45666666666666666644111 012222333333344556666666666666554
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571 544 DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 544 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 609 (681)
........+..+...+...++++.+...+..... ++ ...+..+...+...+..+++...+++....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3221345555566666666666666666665555 22 223333333333455566666666666553
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.73 E-value=0.69 Score=27.04 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHhccCCHHHH
Q 047571 614 NHFTFKVLLSICNQAGFADEA 634 (681)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A 634 (681)
|...|..+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444444444444444444
No 292
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.71 E-value=3 Score=31.55 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571 597 QEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDI 660 (681)
Q Consensus 597 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 660 (681)
=+..+-++.+....+-|++......+.+|.+.+++..|+++|+.++.+-+. ....|..+++-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence 356666777777788899999999999999999999999999988875443 33467666543
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.57 E-value=18 Score=32.61 Aligned_cols=197 Identities=15% Similarity=0.102 Sum_probs=93.1
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC--cchHHHHHHHHHhc
Q 047571 415 TVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRN--VISWTAMIDSCIEN 492 (681)
Q Consensus 415 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~ 492 (681)
.|.-.-.+|...+++++|...+.+..+.- ..+... +.....++.|.-+.+++.+-+ +..|+-....|...
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrsl-------fhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSL-------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34445556777777888777666655311 111111 111233455555555555422 22455566677777
Q ss_pred CChhHHHHHHHHhHh--CCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc---C--CCCChhHHHHHHHHHHhcCCH
Q 047571 493 GRLDDALGVFRSMQL--SKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK---D--FASVPFVAAENIKMYGMCGFL 565 (681)
Q Consensus 493 ~~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~ 565 (681)
|.++-|-..+++.-+ .++.|+ .|.+++.+...- + ...-...+....+.+.+..++
T Consensus 105 GspdtAAmaleKAak~lenv~Pd------------------~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPD------------------DALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHH------------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777766665555432 123443 444444432211 0 011122333444555666666
Q ss_pred HHHHHHhhhCCC--------CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHhccCCHHH
Q 047571 566 ECAKLVFDAVPV--------KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGG--FTP-NHFTFKVLLSICNQAGFADE 633 (681)
Q Consensus 566 ~~a~~~~~~~~~--------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p-~~~~~~~l~~~~~~~g~~~~ 633 (681)
++|-..+.+-.. ++ ...|-..|-.+....++..|.+.++.-.+-+ ..+ +..+...|+.+| ..||.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 665554443222 11 1123334444445556666666666543321 111 345555555554 3455555
Q ss_pred HHHHH
Q 047571 634 ACRIF 638 (681)
Q Consensus 634 A~~~~ 638 (681)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 55544
No 294
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.51 E-value=40 Score=36.44 Aligned_cols=163 Identities=7% Similarity=-0.055 Sum_probs=82.2
Q ss_pred hHHHHHHHHH-hcCChhHHHHHHHHHhhCCCCCCh-----hhHHHHHHHHHhcCChhHHHHHHHHHHHhC----CCCchh
Q 047571 74 AIYKDIQRFA-RQNKLKEALVILDYMDQQGIPVNV-----TTFNALITACVRTRSLVEGRLIHTHIRING----LENNGF 143 (681)
Q Consensus 74 ~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 143 (681)
+.-.+...+. ...+++.|...+++....--+++. ..-..+++.+.+.+... |....++.++.- ..+-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4445555555 577788888888766433212211 12233445555554444 777777765542 122333
Q ss_pred HHHHH-HHHhhcCCChhHHHHhhhhcCC-----CC--CccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCC---------
Q 047571 144 LRTKL-VKMYTSCGSFEDAEKVFDESSS-----ES--VYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGV--------- 206 (681)
Q Consensus 144 ~~~~l-~~~~~~~g~~~~a~~~~~~~~~-----~~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~--------- 206 (681)
.+..+ +..+...++...|.+.++.+.. .+ +..+-.++.+......+..+++++.+.++.....
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 33333 3333333677777777766531 11 2224444445444443356666666666533221
Q ss_pred CCChhhHHHHHHHhh--ccCchhhhHHHHHHHH
Q 047571 207 QLNVYTFSCVIKSFA--GASALMQGLKTHALLI 237 (681)
Q Consensus 207 ~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 237 (681)
.|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223445666665544 4566556655554443
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.12 E-value=41 Score=36.05 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=28.3
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChH
Q 047571 350 RSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLE 395 (681)
Q Consensus 350 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 395 (681)
...+|+.+...|++++|-...-.|...+...|.-.+..+...++..
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 3456666666677777766666666666666665555555555443
No 296
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.96 E-value=0.95 Score=24.44 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=14.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH
Q 047571 654 YLIMIDILTRFGRIEEAHRFRE 675 (681)
Q Consensus 654 ~~~l~~~~~~~g~~~~A~~~~~ 675 (681)
...+..++...|+.++|.++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456667777777777777665
No 297
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.46 E-value=23 Score=32.40 Aligned_cols=49 Identities=2% Similarity=-0.010 Sum_probs=25.8
Q ss_pred CChhHHHHHHHHHHHhCCC---CChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 047571 427 KALNHGKEIHAYAVKNQFL---PNVSIITSLMIMYSKCGVLDYSLKLFDEME 475 (681)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 475 (681)
.++++|..-|++..+..-. -.......++..+.+.|++++....+.++.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3566666666666553211 122233445556666666666665555543
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.41 E-value=7.3 Score=33.86 Aligned_cols=95 Identities=12% Similarity=-0.077 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhCCCCC------hhhHHHHHHHHHcCCChHHHHHHHHHHHhC---CCCCCHHHHHH
Q 047571 550 FVAAENIKMYGMCGFLECAKLVFDAVPVKG------SITWTAIIEAYGYNDLCQEALSLFDKMRNG---GFTPNHFTFKV 620 (681)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ 620 (681)
..+..+...|.+.|+.+.|.+.+.++.... ...+-.+|+.....+++..+...+.+.... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345566777777788888877777766622 345667788888888888888887776543 22222222112
Q ss_pred HHH--HHhccCCHHHHHHHHHHhhhc
Q 047571 621 LLS--ICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 621 l~~--~~~~~g~~~~A~~~~~~~~~~ 644 (681)
... .+...|++..|-+.|-.....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 222 245568999999988766543
No 299
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.03 E-value=26 Score=32.71 Aligned_cols=112 Identities=7% Similarity=0.043 Sum_probs=72.5
Q ss_pred HHHHHHHhhhCC-----CCChhhHHHHHHHHHc-CC-ChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047571 565 LECAKLVFDAVP-----VKGSITWTAIIEAYGY-ND-LCQEALSLFDKMRNG-GFTPNHFTFKVLLSICNQAGFADEACR 636 (681)
Q Consensus 565 ~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~ 636 (681)
+.+|..+|+... -.|......+++.... .+ ....-.++.+-+... |-.++..+....+..+++.++|+.-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 345555555211 1344445555555544 11 222233344444432 346777888888999999999999999
Q ss_pred HHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 637 IFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
+|+......+..-|...|..+|+...+.|+..-...++++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 9987766445556778899999999999998888777653
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.02 E-value=16 Score=30.20 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=41.9
Q ss_pred hcCChhHHHHHHHHHHHhCC-CCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCC-CccHHHHHHHHHHcC
Q 047571 119 RTRSLVEGRLIHTHIRINGL-ENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSES-VYPWNALLRGAVIAG 187 (681)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~ll~~~~~~~ 187 (681)
..++.+++..+++.|.-..+ .+...++.. ..+...|+|++|.++|+++.+.. ..+|..-+.++|...
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 36677777777777765542 222233333 34566788888888888887654 346666666666554
No 301
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.69 E-value=29 Score=32.92 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=11.8
Q ss_pred HHHcCCChHHHHHHHHH
Q 047571 589 AYGYNDLCQEALSLFDK 605 (681)
Q Consensus 589 ~~~~~~~~~~a~~~~~~ 605 (681)
.+.+.+++++|.++|+-
T Consensus 255 ~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhhcCHHHHHHHHHH
Confidence 34457788888887764
No 302
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.59 E-value=54 Score=35.85 Aligned_cols=86 Identities=14% Similarity=0.090 Sum_probs=53.1
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCChh-------HHHHHHH-HHHhcCChHHHHHHHhhCCC--------CCcchHHHHH
Q 047571 423 CSQLKALNHGKEIHAYAVKNQFLPNVS-------IITSLMI-MYSKCGVLDYSLKLFDEMEV--------RNVISWTAMI 486 (681)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li 486 (681)
.....++.+|..++.++...-..|+.. .++.+-. .....|+++.|.++.+.... ...+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677888888887776543233221 2222221 12346777887777665442 3556777777
Q ss_pred HHHHhcCChhHHHHHHHHhHhC
Q 047571 487 DSCIENGRLDDALGVFRSMQLS 508 (681)
Q Consensus 487 ~~~~~~~~~~~A~~~~~~m~~~ 508 (681)
.+..-.|++++|..+..+..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH
Confidence 7788888888888877766554
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.52 E-value=9.8 Score=31.38 Aligned_cols=50 Identities=12% Similarity=-0.088 Sum_probs=30.2
Q ss_pred hcCCHHHHHHHhhhCCC--CChhhHH-HHHHHHHcCCChHHHHHHHHHHHhCC
Q 047571 561 MCGFLECAKLVFDAVPV--KGSITWT-AIIEAYGYNDLCQEALSLFDKMRNGG 610 (681)
Q Consensus 561 ~~g~~~~a~~~~~~~~~--~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~g 610 (681)
..++.++++.+++.+.. |+..-.. .-...+...|++++|+.+|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35777777777775544 4422221 12334566777888888877777653
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.49 E-value=1.5 Score=25.39 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=13.8
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555554
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.43 E-value=0.91 Score=26.52 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=18.8
Q ss_pred HHHHHhCCCCchhHHHHHHHHhhcCCChhHHH
Q 047571 131 THIRINGLENNGFLRTKLVKMYTSCGSFEDAE 162 (681)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (681)
++.++.. +.+...|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344444 556666677777777777766664
No 306
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.78 E-value=53 Score=35.01 Aligned_cols=119 Identities=13% Similarity=0.008 Sum_probs=73.9
Q ss_pred HHHhcCCHHHHHHHhhhCCC-CChhh-H---HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH
Q 047571 558 MYGMCGFLECAKLVFDAVPV-KGSIT-W---TAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFAD 632 (681)
Q Consensus 558 ~~~~~g~~~~a~~~~~~~~~-~~~~~-~---~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 632 (681)
++.-.|+.++|..+.+++.. .|+.. | -.+.-+|+-.|+.....+++.-.+.. ...|..-.....-++.-..+++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence 34445677778888877776 34321 1 23455677777766666666554442 3445555556666677777888
Q ss_pred HHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 633 EACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 633 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
....+.+.+.+.++....-..-.+|+-+|+-.| ..+|+.+++-|-
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~ 633 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLT 633 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhh
Confidence 888888877776555555555556666666666 467777777664
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.05 E-value=8.3 Score=28.93 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047571 87 KLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVK 150 (681)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 150 (681)
+.-++.+-++.+...+.-|++....+.+++|.+.+++..|.++++-.+... ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 445566677777777888899999999999999999999999998776332 224445665554
No 308
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=84.94 E-value=34 Score=32.04 Aligned_cols=75 Identities=13% Similarity=-0.043 Sum_probs=39.4
Q ss_pred HHhHhCCCCCCHHHHHHHHHHhccccchH-HHHHHHHHHHHc-----CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCC
Q 047571 503 RSMQLSKHRPDSVAMARMLSVSGQLKALK-LGKEIHGQVLKK-----DFASVPFVAAENIKMYGMCGFLECAKLVFDAVP 576 (681)
Q Consensus 503 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 576 (681)
+-..+.+.+++......++..+...+.-+ .-..+.+.++++ ....++.....+...|.+.|++.+|+.-|-...
T Consensus 38 ev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 38 EVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp HHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 33344566666665555555554443221 233344444432 223468888999999999999999888775444
Q ss_pred C
Q 047571 577 V 577 (681)
Q Consensus 577 ~ 577 (681)
.
T Consensus 118 ~ 118 (260)
T PF04190_consen 118 D 118 (260)
T ss_dssp H
T ss_pred C
Confidence 3
No 309
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.91 E-value=0.77 Score=38.40 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=55.2
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHH
Q 047571 419 VIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDA 498 (681)
Q Consensus 419 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 498 (681)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566677777777777777777766566677778888888888777777777763332 3334455666666666666
Q ss_pred HHHHHHh
Q 047571 499 LGVFRSM 505 (681)
Q Consensus 499 ~~~~~~m 505 (681)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666554
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.85 E-value=7.9 Score=29.38 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047571 90 EALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVK 150 (681)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 150 (681)
+..+-++.+...++-|++....+.+++|.+.+++..|.++++-.+..- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 466667777777788899999999999999999999999998887553 233336666654
No 311
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.36 E-value=10 Score=35.53 Aligned_cols=102 Identities=14% Similarity=0.215 Sum_probs=65.8
Q ss_pred hCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCC-CCC-----ccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCC
Q 047571 136 NGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSS-ESV-----YPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLN 209 (681)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-----~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 209 (681)
.|.+....+...++..-....++++++..+-++.. ++. .+-.+.++-+.+. ++..++.++..=.+-|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky---~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY---DPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc---ChHHHHHHHhCcchhccccc
Confidence 34455555566666666666777777777765542 211 1122233333322 67778888777778888888
Q ss_pred hhhHHHHHHHhhccCchhhhHHHHHHHHHhC
Q 047571 210 VYTFSCVIKSFAGASALMQGLKTHALLIKNG 240 (681)
Q Consensus 210 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 240 (681)
..+++.+|..+.+.+++.+|.++.-.|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888888887776665543
No 312
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.24 E-value=21 Score=36.74 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=67.3
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHH
Q 047571 355 DMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKE 434 (681)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 434 (681)
....+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|....+ |..|+-.+...|+.+....
T Consensus 645 elal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 34456678888877765433 556788888888888888888888776554 4455666666676665555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 047571 435 IHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEM 474 (681)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 474 (681)
+-....+.|. .|.-.-+|...|+++++.+++.+-
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 5555555552 233344566677777777776554
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.65 E-value=2.4 Score=24.38 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=11.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 584 TAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 584 ~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
..+...+...|++++|++.|++..+
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 314
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.60 E-value=2.6 Score=30.11 Aligned_cols=46 Identities=15% Similarity=0.033 Sum_probs=21.6
Q ss_pred cCCChHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHhccCCHHHHHHH
Q 047571 592 YNDLCQEALSLFDKMRNGGFTP-N-HFTFKVLLSICNQAGFADEACRI 637 (681)
Q Consensus 592 ~~~~~~~a~~~~~~m~~~g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~ 637 (681)
..++.++|+..|++..+.-..| + -.++..|+.+++..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555432222 1 13344455555555555555543
No 315
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.59 E-value=7.1 Score=36.42 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=70.1
Q ss_pred CCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC-C-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHH
Q 047571 342 RYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER-N-----EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVT 415 (681)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 415 (681)
|.+....+...++.......+++.+...+-.+... + ..+-.++++.+ -.-+.++++.++..=+..|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 44444555555565556567777777776665542 1 11122233333 33467789999888889999999999
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhC
Q 047571 416 VATVIPVCSQLKALNHGKEIHAYAVKNQ 443 (681)
Q Consensus 416 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 443 (681)
++.+|+.+.+.+++..|..+.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999988887776544
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.36 E-value=2.4 Score=24.41 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 652 EHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 652 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
..+..+..++.+.|++++|++.+++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456777888888888888888887653
No 317
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.80 E-value=8.7 Score=33.87 Aligned_cols=69 Identities=10% Similarity=-0.102 Sum_probs=36.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 047571 555 NIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNG--GFTPNHFTFKVLLS 623 (681)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~ 623 (681)
.+..+.+.+.+.+|....+.-.+ -|...-..+++.+|-.|++++|..=++-.-.. ...+-..+|..++.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455555666666666543222 23444555666777777777776555544331 11223445555554
No 318
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.60 E-value=34 Score=30.32 Aligned_cols=159 Identities=11% Similarity=-0.013 Sum_probs=83.0
Q ss_pred CCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCcc-HHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 047571 139 ENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYP-WNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVI 217 (681)
Q Consensus 139 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 217 (681)
+.-+.+||.|.--+...|+++.|.+.|+...+-|+.- |..+=++..-.-.+++.-|.+-|.+.-+.. |+. .|.++
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D--~~D-PfR~L- 171 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD--PND-PFRSL- 171 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC--CCC-hHHHH-
Confidence 3345678888878888888888888888877655543 555544433322237777777766665542 211 12211
Q ss_pred HHhh--ccCchhhhHHHHH-HHHHhCCCCCcHHHhH-HHHHHHhcCChHHHHHHHhccCCCC-------hhhHHHHHHHH
Q 047571 218 KSFA--GASALMQGLKTHA-LLIKNGFVDYLILRTS-LIDMYFKCGKIKLARRVFDETGDRD-------IVVWGSMIAGF 286 (681)
Q Consensus 218 ~~~~--~~~~~~~a~~~~~-~~~~~g~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~ 286 (681)
-.|. ..-++.+|..-+. ... ..|..-|.. ++..|...=..+.+.+-.......+ ..+|--+.+-+
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 1121 2223444443222 221 122222222 2233322222233322222222211 24677778888
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 047571 287 AHNRLRWEALDCARWMIRE 305 (681)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~~ 305 (681)
...|+.++|..+|+-....
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 8889999999988877654
No 319
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.49 E-value=18 Score=27.37 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHH
Q 047571 122 SLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKM 201 (681)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m 201 (681)
..++|.-+-+++...+ .....+--+-+..+.+.|++++|..+.+.+..||..+|-++-.+ +.| -.+....-+..|
T Consensus 20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlG--l~s~l~~rl~rl 94 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLG--LGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhc--cHHHHHHHHHHH
Confidence 3567777777776554 22344444556677888999999999999888888888777544 333 334444444455
Q ss_pred HHcC
Q 047571 202 RELG 205 (681)
Q Consensus 202 ~~~g 205 (681)
...|
T Consensus 95 a~sg 98 (115)
T TIGR02508 95 AASG 98 (115)
T ss_pred HhCC
Confidence 5554
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.43 E-value=20 Score=31.47 Aligned_cols=79 Identities=13% Similarity=-0.040 Sum_probs=55.8
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC--CCCCChhHHHHHHHHHhhcCCHH
Q 047571 591 GYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGY--KIEALEEHYLIMIDILTRFGRIE 668 (681)
Q Consensus 591 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 668 (681)
.+.|+ +.|.+.|-++...+.--++.....|..-|. ..+.+++++++....+-. +-.+|++.+.+|+.++.+.|+.+
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34454 678888888887764445555555554444 667888888888775532 23567888999999999999988
Q ss_pred HHH
Q 047571 669 EAH 671 (681)
Q Consensus 669 ~A~ 671 (681)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.10 E-value=2.8 Score=25.54 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=15.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMR 607 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~ 607 (681)
+++.|...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45556666666666666666666554
No 322
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.96 E-value=12 Score=33.40 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=12.2
Q ss_pred hccCCHHHHHHHHHHhhhc
Q 047571 626 NQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~~ 644 (681)
+..+++.+|+.+|+++...
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556677777777766553
No 323
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.74 E-value=3.4 Score=25.20 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 615 HFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
..+++.|...|...|++++|.+++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677888888888888888888887754
No 324
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.60 E-value=84 Score=34.09 Aligned_cols=115 Identities=8% Similarity=0.034 Sum_probs=51.1
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571 79 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF 158 (681)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (681)
.....+.|++..+..+...+..... ..-..|..+...+. ....++...+++.-. +.+.....-..-+..+.+.+++
T Consensus 40 A~~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w 115 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDW 115 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCH
Confidence 4445566777777666666542211 11112222222111 123333333333211 1122233334445556667777
Q ss_pred hHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHH
Q 047571 159 EDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMK 200 (681)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 200 (681)
+...+.... +..+...-.....+....| +.++|......
T Consensus 116 ~~~~~~~~~-~p~~~~~~c~~~~A~~~~G--~~~~A~~~a~~ 154 (644)
T PRK11619 116 RGLLAFSPE-KPKPVEARCNYYYAKWATG--QQQEAWQGAKE 154 (644)
T ss_pred HHHHHhcCC-CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 777763322 2223333445555666666 54445444443
No 325
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=81.24 E-value=61 Score=32.25 Aligned_cols=346 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhc
Q 047571 75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTS 154 (681)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (681)
.+..+..|...|+..+|-+..+++.. +......+-+++...+.-..+..+.-.+.+.+...+...-+.+..++.+
T Consensus 217 In~~l~eyv~~getrea~rciR~L~v-----sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr 291 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGV-----SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSR 291 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCC-----CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchh
Q ss_pred CC--------ChhHHHHhhhhcCCCCCcc----HHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 047571 155 CG--------SFEDAEKVFDESSSESVYP----WNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAG 222 (681)
Q Consensus 155 ~g--------~~~~a~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 222 (681)
.+ +...|...|+.+....+.- -+.+-..-...| +.+. +..|++ +...+|+-|..
T Consensus 292 ~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g--~~e~-~r~Fkk-----------~~~~IIqEYFl 357 (645)
T KOG0403|consen 292 KGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPG--DSEN-LRAFKK-----------DLTPIIQEYFL 357 (645)
T ss_pred hccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCC--cchH-HHHHHH-----------hhHHHHHHHHh
Q ss_pred cCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC-----------------------ChhhH
Q 047571 223 ASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR-----------------------DIVVW 279 (681)
Q Consensus 223 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~ 279 (681)
.|+..+..+.++.+-.-...|-...+..-+..=.++..-+.|-.++..+.-. |...-
T Consensus 358 sgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a 437 (645)
T KOG0403|consen 358 SGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRA 437 (645)
T ss_pred cCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhcccccc
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCch----HHhHHHH
Q 047571 280 GSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELF----VRSSLVD 355 (681)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~ 355 (681)
...+..|....-.++.+.-+.-=.-.|..|-..+-...++.....=....+=+-+....-.+|-...+. -...|+.
T Consensus 438 ~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLe 517 (645)
T KOG0403|consen 438 SQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLE 517 (645)
T ss_pred HHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccC-----
Q 047571 356 MYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLK----- 427 (681)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----- 427 (681)
-|.-.|++.+|.+.++++.-| ..+.+.+++.+.-+.|+-...+.+++..-.. ...|-+.|-.+|.+..
T Consensus 518 EY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~RV~dsl~D 593 (645)
T KOG0403|consen 518 EYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFERVYDSLPD 593 (645)
T ss_pred HHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhhhhccCcc
Q ss_pred ---ChhHHHHHHHHHHHhC
Q 047571 428 ---ALNHGKEIHAYAVKNQ 443 (681)
Q Consensus 428 ---~~~~a~~~~~~~~~~~ 443 (681)
++..|.+.|+...+.+
T Consensus 594 lsLDvPna~ekf~~~Ve~~ 612 (645)
T KOG0403|consen 594 LSLDVPNAYEKFERYVEEC 612 (645)
T ss_pred cccCCCcHHHHHHHHHHHH
No 326
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.88 E-value=4.3 Score=23.40 Aligned_cols=28 Identities=18% Similarity=0.042 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 616 FTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.+|..+..++...|++++|++.|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777776654
No 327
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.80 E-value=38 Score=29.59 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=22.0
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 589 AYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 589 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.....|.+|+|+.+++...+.++. ......-.+++...|+-++|+.-|+...+
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 334444445554444444332211 11122223344455555555555554444
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.54 E-value=89 Score=33.70 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=29.0
Q ss_pred HHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHH
Q 047571 246 ILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWE 294 (681)
Q Consensus 246 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 294 (681)
.+....|+.+.-.|++++|-...-.|...+..-|.-.+..+...+....
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 3445556666666666666666666666666556555555555554443
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.30 E-value=63 Score=31.87 Aligned_cols=66 Identities=14% Similarity=0.062 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 047571 512 PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFAS---VPFVAAENIKMYGMCGFLECAKLVFDAVPV 577 (681)
Q Consensus 512 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 577 (681)
....++..+...+.+.|.++.|...+..+.+.+... .+.+...-++.....|+.++|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567788888888999999988888887654222 456666667778888888888887765443
No 330
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.94 E-value=87 Score=32.63 Aligned_cols=98 Identities=11% Similarity=0.111 Sum_probs=48.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-CC-CCchhHHHHHHHHhhcC
Q 047571 79 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVR-TRSLVEGRLIHTHIRIN-GL-ENNGFLRTKLVKMYTSC 155 (681)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~ 155 (681)
...=.+.|..+.+.++|++-.. |++.+...+...+..+.. .|+.+.....|+..... |. -.....|...|.--..+
T Consensus 86 A~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~q 164 (577)
T KOG1258|consen 86 ADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQ 164 (577)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhcc
Confidence 3333445555566666665554 244455555544444433 45555555555555543 21 12233445555555555
Q ss_pred CChhHHHHhhhhcCCCCCccHH
Q 047571 156 GSFEDAEKVFDESSSESVYPWN 177 (681)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~ 177 (681)
+++....++++.+.+-....++
T Consensus 165 ks~k~v~~iyeRileiP~~~~~ 186 (577)
T KOG1258|consen 165 KSWKRVANIYERILEIPLHQLN 186 (577)
T ss_pred ccHHHHHHHHHHHHhhhhhHhH
Confidence 5666666666655443333333
No 331
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.32 E-value=31 Score=32.00 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=41.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHh--
Q 047571 587 IEAYGYNDLCQEALSLFDKMRNG--GFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILT-- 662 (681)
Q Consensus 587 ~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 662 (681)
|++++..|++.+++...-+--+. .++|.. ...-|-.|.+.|.+..+.++-..-.+..+ .-+...|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 55556666666655443332221 123333 33333346666666666665555544311 112233555544443
Q ss_pred ---hcCCHHHHHHHHH
Q 047571 663 ---RFGRIEEAHRFRE 675 (681)
Q Consensus 663 ---~~g~~~~A~~~~~ 675 (681)
=.|.++||.+++.
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 3466666666653
No 332
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.93 E-value=41 Score=28.37 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=9.8
Q ss_pred HHHhcCCHHHHHHHhhhCCC
Q 047571 558 MYGMCGFLECAKLVFDAVPV 577 (681)
Q Consensus 558 ~~~~~g~~~~a~~~~~~~~~ 577 (681)
.+...|++.+|.++|+++..
T Consensus 53 l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhc
Confidence 34444555555555555444
No 333
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.17 E-value=44 Score=28.24 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=6.8
Q ss_pred hcCChHHHHHHHhhCC
Q 047571 460 KCGVLDYSLKLFDEME 475 (681)
Q Consensus 460 ~~g~~~~a~~~~~~~~ 475 (681)
..|++.+|..+|+++.
T Consensus 56 ~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 56 VRGDWDDALRLLRELE 71 (160)
T ss_pred HhCCHHHHHHHHHHHh
Confidence 3444444444444443
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.84 E-value=5.4 Score=22.93 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 652 EHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 652 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
..|..+..+|...|++++|.+.+++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677778888888888888877764
No 335
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.43 E-value=68 Score=30.06 Aligned_cols=72 Identities=14% Similarity=0.041 Sum_probs=55.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh----cCCCCCChhHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR----GYKIEALEEHY 654 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 654 (681)
.++.....|...|.+.+|.++-++....+ +.+...+-.|+..+...||--.|...++.+.+ .+|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 45666778888999999999999998854 55888888999999999997777777776643 35666654443
No 336
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.83 E-value=66 Score=29.60 Aligned_cols=256 Identities=11% Similarity=0.053 Sum_probs=142.1
Q ss_pred cCCHHHHHHHHhhcCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc---Cc--CCCHHHHHHHHHHhhccC
Q 047571 360 CRDMNSAWRVFYETEER-------NEILWTALMSGYVSNGRLEQALRSIAWMQQE---GF--RPDVVTVATVIPVCSQLK 427 (681)
Q Consensus 360 ~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~--~p~~~~~~~ll~~~~~~~ 427 (681)
..++++|+.-|++..+- .-.+...+|....+.+++++.+..+.+|..- .+ .-+..+.+.++.......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 45677777777765531 2335566788888999999988888887542 11 234456677777766666
Q ss_pred ChhHHHHHHHHHHH----h-CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--------CC-------cchHHHHHH
Q 047571 428 ALNHGKEIHAYAVK----N-QFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--------RN-------VISWTAMID 487 (681)
Q Consensus 428 ~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~-------~~~~~~li~ 487 (681)
+.+.-.++++.-.+ . +-+.=..|-..|...|...|.+.+..++++++.. .| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 66555555543221 1 1111123344566777777788888888777652 01 135777788
Q ss_pred HHHhcCChhHHHHHHHHhHhCC-CCCCHHHHHHHHHHhc-----cccchHHHH-HHHHHHHHc---CCCCChhH--HHHH
Q 047571 488 SCIENGRLDDALGVFRSMQLSK-HRPDSVAMARMLSVSG-----QLKALKLGK-EIHGQVLKK---DFASVPFV--AAEN 555 (681)
Q Consensus 488 ~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~-----~~~~~~~a~-~~~~~~~~~---~~~~~~~~--~~~l 555 (681)
.|...++-..-..+|++...-. ..|-+.. ..+|+-|. +.|.+++|- .+|+..... |.+-.... |-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888888777777887765432 2344333 34455553 456777664 455555433 32211212 2333
Q ss_pred HHHHHhcCC----HHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047571 556 IKMYGMCGF----LECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVL 621 (681)
Q Consensus 556 ~~~~~~~g~----~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 621 (681)
..++.+.|- -.+|.-+- ..|.+.+...|+.+|.. +++.+-.+++..-.+ ++..|+..-..+
T Consensus 279 ANMLmkS~iNPFDsQEAKPyK---NdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~-~IM~DpFIReh~ 343 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAKPYK---NDPEILAMTNLVAAYQN-NDIIEFERILKSNRS-NIMDDPFIREHI 343 (440)
T ss_pred HHHHHHcCCCCCcccccCCCC---CCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc-cccccHHHHHHH
Confidence 444444431 11111000 00445677888888864 555555555554433 255566555443
No 337
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.65 E-value=32 Score=31.84 Aligned_cols=88 Identities=10% Similarity=0.030 Sum_probs=40.6
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc---
Q 047571 486 IDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC--- 562 (681)
Q Consensus 486 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 562 (681)
|.+++..++|.+++...-+--+.--+........-|-.|.+.+....+.++-....+..-.-+..-|..++..|...
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 44555555555544332222111111112233333344555555555555555555432222223355555555443
Q ss_pred --CCHHHHHHHhh
Q 047571 563 --GFLECAKLVFD 573 (681)
Q Consensus 563 --g~~~~a~~~~~ 573 (681)
|.+++|+++..
T Consensus 170 PLG~~~eAeelv~ 182 (309)
T PF07163_consen 170 PLGHFSEAEELVV 182 (309)
T ss_pred ccccHHHHHHHHh
Confidence 77777777763
No 338
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.24 E-value=8.6 Score=34.12 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 598 EALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 598 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
..++..++..+ ..|++..|..++.++...|+.++|.++.+++..-
T Consensus 129 ~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 129 AYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444455554 4788888888888888888888888888877754
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.04 E-value=5.6 Score=22.54 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=16.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 620 VLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
.+..++.+.|++++|.++|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666667777777777766654
No 340
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.99 E-value=99 Score=34.46 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047571 109 TFNALITACVRTRSLVEGRLIHTHIRI 135 (681)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (681)
-|..|+-.|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 366777777777777777777777665
No 341
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=74.41 E-value=1.7e+02 Score=33.61 Aligned_cols=257 Identities=6% Similarity=-0.091 Sum_probs=155.4
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCC
Q 047571 365 SAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQF 444 (681)
Q Consensus 365 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 444 (681)
....+...+.+++..+-...+..+.+.+..+ +...+....+. +|...-...+.++.+.+........+..+..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~--- 694 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG--- 694 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---
Confidence 3345566667788888888888888877644 54555555432 3444444555555444322112223333333
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 047571 445 LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVS 524 (681)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 524 (681)
.++..+-...+.++...+.. ....++..+..+|...-...+.++.+.+..+. +.... -.++...-.....++
T Consensus 695 ~~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL 766 (897)
T PRK13800 695 SPDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGL 766 (897)
T ss_pred CCCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHH
Confidence 25666666666776654322 12345566667777766777777777655432 22222 245666666666677
Q ss_pred ccccchHH-HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH-HhhhCCCCChhhHHHHHHHHHcCCChHHHHHH
Q 047571 525 GQLKALKL-GKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKL-VFDAVPVKGSITWTAIIEAYGYNDLCQEALSL 602 (681)
Q Consensus 525 ~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 602 (681)
...+..+. +...+..+.+ .+++.+-...+..+.+.|..+.+.. +...+..++...-...+.++...+. +++...
T Consensus 767 ~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 66665433 3344444443 4568888899999999998766533 4444445666566667777777765 567777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 603 FDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 603 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+-.+.+ .|+...-...+.++.+.+....+...+....+
T Consensus 843 L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 777775 67888888888888886444567777776655
No 342
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.76 E-value=1.1e+02 Score=31.17 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=11.1
Q ss_pred HHHHHhcCChHHHHHHHhc
Q 047571 252 IDMYFKCGKIKLARRVFDE 270 (681)
Q Consensus 252 i~~~~~~~~~~~a~~~~~~ 270 (681)
+...+..|+.+.+..+++.
T Consensus 72 L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 4444566666666666654
No 343
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.32 E-value=4.4 Score=23.00 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=21.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 654 YLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 654 ~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
+-.+..++.+.|+.++|.+.++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4567888999999999999998764
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.13 E-value=9.4 Score=21.85 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=19.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 617 TFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667777777788887777776654
No 345
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.09 E-value=27 Score=27.79 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHH
Q 047571 598 EALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMI 658 (681)
Q Consensus 598 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 658 (681)
+..+-++.+..-.+-|++......+.+|.+.+|+..|.++|+.++.+ ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34455666666678899999999999999999999999999988764 333333455443
No 346
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.99 E-value=39 Score=25.70 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=44.9
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHH
Q 047571 455 MIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMAR 519 (681)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 519 (681)
+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.+|..+| .|....|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 445667889999999988888888888876643 46677777777777777776 555555543
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.65 E-value=14 Score=26.66 Aligned_cols=49 Identities=10% Similarity=0.029 Sum_probs=38.0
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHH
Q 047571 626 NQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFR 674 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 674 (681)
......+.|+..|....++..-.++ ..++..|+.+|+..|++++++++-
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777788999999988876444444 677888899999999999888753
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.67 E-value=43 Score=34.69 Aligned_cols=148 Identities=12% Similarity=0.049 Sum_probs=92.7
Q ss_pred cCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHH
Q 047571 461 CGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQV 540 (681)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 540 (681)
.|+++.|..++..+.++ .-+.++.-+.++|-.++|+++ .+|... -.....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh
Confidence 45666666655555432 233445555566666666654 233221 122334567777777766543
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047571 541 LKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKV 620 (681)
Q Consensus 541 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 620 (681)
.+..-|..|.++..+.|++..|.+.|.... -|..|+-.+...|+.+....+-....+.| ..| .
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N-----~ 726 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQG-KNN-----L 726 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhhc-ccc-----h
Confidence 245668888888888888888888887665 36777777777888776666666666655 222 3
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 047571 621 LLSICNQAGFADEACRIFNV 640 (681)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~ 640 (681)
..-++...|++++..+++..
T Consensus 727 AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 33456678888888888763
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.34 E-value=1.3e+02 Score=30.88 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI 624 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 624 (681)
+.+.-+-.-|....++++|++++....++. .-|...-..++.-
T Consensus 206 Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 206 VLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 344444455556666777777776666654 3444444444443
No 350
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=71.18 E-value=1.4e+02 Score=31.25 Aligned_cols=412 Identities=9% Similarity=-0.013 Sum_probs=202.8
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH-HHHHHHhcCChhHHHHHHHHHHHhCCCCchhHH
Q 047571 67 LHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNA-LITACVRTRSLVEGRLIHTHIRINGLENNGFLR 145 (681)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (681)
...-....|..++..--...+.+.+..++..++.. -|...-|-. ....=.+.|..+.+..+|+.-.. +++.+...|
T Consensus 40 ~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW 116 (577)
T KOG1258|consen 40 NDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLW 116 (577)
T ss_pred cchhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHH
Confidence 33344456777776666666666777788888755 344444333 33333567888899999998774 456666666
Q ss_pred HHHHHHhh-cCCChhHHHHhhhhcCC---CC---CccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 047571 146 TKLVKMYT-SCGSFEDAEKVFDESSS---ES---VYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIK 218 (681)
Q Consensus 146 ~~l~~~~~-~~g~~~~a~~~~~~~~~---~~---~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 218 (681)
...+..++ ..|+.+...+.|+.... .+ ..-|...|.--...+ ++.....+|++..+.- ..-|+....
T Consensus 117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qk--s~k~v~~iyeRileiP----~~~~~~~f~ 190 (577)
T KOG1258|consen 117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQK--SWKRVANIYERILEIP----LHQLNRHFD 190 (577)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccc--cHHHHHHHHHHHHhhh----hhHhHHHHH
Confidence 65555444 45777777788876542 12 122666666664444 7777888877766531 112222211
Q ss_pred Hhh---ccC------chhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcC-ChHHHHHHHhccCCCChhhHHHHHHHHHh
Q 047571 219 SFA---GAS------ALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCG-KIKLARRVFDETGDRDIVVWGSMIAGFAH 288 (681)
Q Consensus 219 ~~~---~~~------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 288 (681)
.|. +.. ..+++.++-...... ......+ ..+.-....+....+.
T Consensus 191 ~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~s------------- 244 (577)
T KOG1258|consen 191 RFKQLLNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDPS------------- 244 (577)
T ss_pred HHHHHHhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCcc-------------
Confidence 111 110 111111111111000 0000000 0111111111111110
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhcc------CCCCCchHHhHHHHHHHhcCC
Q 047571 289 NRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNE------RYSEELFVRSSLVDMYCKCRD 362 (681)
Q Consensus 289 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~ 362 (681)
+..+++...+.+.... -..+|..-. ........++..++.+ -.+++..+|...++--.+.|+
T Consensus 245 -~~l~~~~~~l~~~~~~----~~~~~~~s~-------~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~ 312 (577)
T KOG1258|consen 245 -KSLTEEKTILKRIVSI----HEKVYQKSE-------EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGD 312 (577)
T ss_pred -chhhHHHHHHHHHHHH----HHHHHHhhH-------hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhccc
Confidence 0001111100000000 000000000 0011111111111111 123445677778888888899
Q ss_pred HHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHH-hhccCChhHHHHHHHH
Q 047571 363 MNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPV-CSQLKALNHGKEIHAY 438 (681)
Q Consensus 363 ~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~ 438 (681)
.+.+.-+|+....+ -...|-..+.-....|+.+-|..++..-.+--+ |+......+-.. +...|+...|..+++.
T Consensus 313 ~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~ 391 (577)
T KOG1258|consen 313 FSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQR 391 (577)
T ss_pred HHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 99888888887765 233454455555555888888777665544322 222222222222 2346789999999988
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHH---HHHhhCCC--CCcchHHHHHHHH-----HhcCChhHHHHHHHHhHhC
Q 047571 439 AVKNQFLPNVSIITSLMIMYSKCGVLDYSL---KLFDEMEV--RNVISWTAMIDSC-----IENGRLDDALGVFRSMQLS 508 (681)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~~~~--~~~~~~~~li~~~-----~~~~~~~~A~~~~~~m~~~ 508 (681)
+...- +.-...-..-+....+.|+.+.+. .++..... .+....+.+.--+ .-.++.+.|..++.++.+.
T Consensus 392 i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 392 IESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred HHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 87754 222233333455556677777777 44433332 2333333332222 2357788888888888775
Q ss_pred CCCCCHHHHHHHHHHhcccc
Q 047571 509 KHRPDSVAMARMLSVSGQLK 528 (681)
Q Consensus 509 g~~p~~~~~~~ll~~~~~~~ 528 (681)
++++...|..++..+...+
T Consensus 471 -~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 471 -LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred -CCccHHHHHHHHHHHHhCC
Confidence 4556666666666655443
No 351
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.14 E-value=93 Score=29.28 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047571 510 HRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK-DFASVPFVAAENIKMYGMCGFLECAKLV 571 (681)
Q Consensus 510 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 571 (681)
..++..+...++..++..+++..-.++|+..... +...|...|..+++.....|+..-...+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 3455555555555555566665555555555443 3344444444444444444444433333
No 352
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=70.69 E-value=44 Score=30.14 Aligned_cols=24 Identities=25% Similarity=0.244 Sum_probs=13.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhc
Q 047571 621 LLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
+.....+.|+.++|.+.|..+...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 334455556666666666655554
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.36 E-value=11 Score=23.68 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=11.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHh
Q 047571 586 IIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 586 l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555554
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.21 E-value=81 Score=28.22 Aligned_cols=76 Identities=11% Similarity=0.043 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCCchhHHHHHHHH
Q 047571 75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRING--LENNGFLRTKLVKM 151 (681)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 151 (681)
.+.-++.+.+.++..+++...+.-.+.. |-+...-..+++.++-.|+|++|..-++..-+.. ..+...+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4456778888889999998888776653 4466777888899999999999987777666543 24445677777654
No 355
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.03 E-value=1.3e+02 Score=30.56 Aligned_cols=175 Identities=13% Similarity=-0.007 Sum_probs=81.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchh--HHHHHHHHhhc
Q 047571 79 IQRFARQNKLKEALVILDYMDQQGIPVNVTT--FNALITACVRTRSLVEGRLIHTHIRINGLENNGF--LRTKLVKMYTS 154 (681)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 154 (681)
+...++.|+.+-+ +.+.+.|..|+... -.+.+...+..|+.+ +.+.+.+.|..|+.. ....-+...+.
T Consensus 6 L~~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHH
Confidence 4444556666544 44445666655432 334455556667654 444555566555432 11234555667
Q ss_pred CCChhHHHHhhhhcCCCC----CccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhh--HHHHHHHhhccCchhh
Q 047571 155 CGSFEDAEKVFDESSSES----VYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYT--FSCVIKSFAGASALMQ 228 (681)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~ 228 (681)
.|+.+.+..+++.-...+ ..-.+. +...+..| +. ++++.+.+.|..|+... -.+.+...+..|+.+-
T Consensus 78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~--~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 78 EGDVKAVEELLDLGKFADDVFYKDGMTP-LHLATILK--KL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred CCCHHHHHHHHHcCCcccccccCCCCCH-HHHHHHhC--CH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 788888777776433211 111222 22233333 33 34444555566554332 1233444445555443
Q ss_pred hHHHHHHHHHhCCCCCc---HHHhHHHHHHHhcCChHHHHHHHhccCC
Q 047571 229 GLKTHALLIKNGFVDYL---ILRTSLIDMYFKCGKIKLARRVFDETGD 273 (681)
Q Consensus 229 a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~ 273 (681)
+. .+.+.|..++. .-.+ -+...+..|+.+-+.-+++.-..
T Consensus 151 v~----~Ll~~g~~~~~~d~~g~T-pL~~A~~~g~~eiv~~Ll~~ga~ 193 (413)
T PHA02875 151 IE----LLIDHKACLDIEDCCGCT-PLIIAMAKGDIAICKMLLDSGAN 193 (413)
T ss_pred HH----HHHhcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCC
Confidence 33 33344433321 1112 23333455665555555554333
No 356
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.85 E-value=63 Score=26.82 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=23.3
Q ss_pred hhhHHHHHHHhhccCc-hhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHh
Q 047571 210 VYTFSCVIKSFAGASA-LMQGLKTHALLIKNGFVDYLILRTSLIDMYFK 257 (681)
Q Consensus 210 ~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 257 (681)
..+|.+++++..+... --.+..+|..|++.+.+.+..-|..+|.++.+
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 3345555555544333 23344455555555555555555555555443
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.81 E-value=65 Score=28.44 Aligned_cols=73 Identities=12% Similarity=0.007 Sum_probs=46.9
Q ss_pred hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCCHHHHH
Q 047571 496 DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK---DFASVPFVAAENIKMYGMCGFLECAK 569 (681)
Q Consensus 496 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 569 (681)
++|.+.|-++...+.--+......+...|. ..+.+++..++....+. +-.+++.++.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 557777777777665544444444443333 56677777777666642 33667888888888888888777764
No 358
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.80 E-value=1.9e+02 Score=32.36 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh---HHHHHH-H--HHhcCChhHHHHHHHHHHH
Q 047571 75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTT---FNALIT-A--CVRTRSLVEGRLIHTHIRI 135 (681)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~-~--~~~~~~~~~a~~~~~~~~~ 135 (681)
+..-+..+....++++|+.+-+.....+ |...- +..... + +-..+++++|.+.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 7788899999999999998877665432 21111 112222 1 3457888888888887754
No 359
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.44 E-value=1.1e+02 Score=29.37 Aligned_cols=147 Identities=10% Similarity=-0.049 Sum_probs=91.6
Q ss_pred hcCCChhHHHHhhhhcCC---CCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHH----HHHHhhccCc
Q 047571 153 TSCGSFEDAEKVFDESSS---ESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSC----VIKSFAGASA 225 (681)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~~~ 225 (681)
.-.|+..+|-..++++.+ .|...++..-.++...| +.......+++.... -.||...|.. ..-++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G--~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNG--NQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhcc--chhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 345777777777776653 45556777777787788 777777777776543 1233333322 2223446788
Q ss_pred hhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC----Ch---hhHHHHHHHHHhcCChHHHHHH
Q 047571 226 LMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR----DI---VVWGSMIAGFAHNRLRWEALDC 298 (681)
Q Consensus 226 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~li~~~~~~~~~~~a~~~ 298 (681)
+++|++.-++..+.+ +.|.-...++...+--.|++.++.++...-... +. .-|=...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 888888777666544 345556667777777788888888888765442 10 1122233345666888888888
Q ss_pred HHHHH
Q 047571 299 ARWMI 303 (681)
Q Consensus 299 ~~~m~ 303 (681)
|+.-.
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 86543
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.43 E-value=11 Score=23.61 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=17.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCC
Q 047571 485 MIDSCIENGRLDDALGVFRSMQLSK 509 (681)
Q Consensus 485 li~~~~~~~~~~~A~~~~~~m~~~g 509 (681)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777777543
No 361
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=69.42 E-value=14 Score=35.04 Aligned_cols=47 Identities=15% Similarity=-0.018 Sum_probs=23.3
Q ss_pred HHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHH
Q 047571 558 MYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFD 604 (681)
Q Consensus 558 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 604 (681)
-|.+.|++++|...|..... | |.+++..-..+|.+.+.+..|..--.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 34555555555555554433 3 44555555555555555544443333
No 362
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.39 E-value=61 Score=32.55 Aligned_cols=129 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHH
Q 047571 511 RPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAII 587 (681)
Q Consensus 511 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~ 587 (681)
.|...-...-|.---..|++..|.+-+....+.. +.+|.............|++|.+...+..... .+..+..+++
T Consensus 286 ~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~ 364 (831)
T PRK15180 286 QDQIREITLSITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRL 364 (831)
T ss_pred CcchhHHHHHHHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHH
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047571 588 EAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVM 641 (681)
Q Consensus 588 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (681)
+.....|++++|..+-+-|.... -.++.............|-++++...|+++
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~~e-ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLSNE-IEDEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhccc-cCChhheeeecccHHHHhHHHHHHHHHHHH
No 363
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.34 E-value=30 Score=30.24 Aligned_cols=87 Identities=11% Similarity=-0.042 Sum_probs=61.1
Q ss_pred HHHHhcCCHHHHHHHhhhCCC--CC------hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 047571 557 KMYGMCGFLECAKLVFDAVPV--KG------SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA 628 (681)
Q Consensus 557 ~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 628 (681)
.-+.+.|++++|..-|..+.. |. .+.|..-..++.+.+.++.|+.--.+.++.+ +........=..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 346677888888888776655 32 4566666777888888888888888887753 22334444445677888
Q ss_pred CCHHHHHHHHHHhhhc
Q 047571 629 GFADEACRIFNVMSRG 644 (681)
Q Consensus 629 g~~~~A~~~~~~~~~~ 644 (681)
..+++|++=|..+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8888888888877653
No 364
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=67.25 E-value=1.1e+02 Score=28.65 Aligned_cols=106 Identities=11% Similarity=-0.083 Sum_probs=45.2
Q ss_pred hcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHH----HHHHcCCCCChhhHHHHHHHHhhhhhhc----
Q 047571 257 KCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCAR----WMIREGIYPNSVVLTILLPVIGEAWARK---- 328 (681)
Q Consensus 257 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~----~m~~~g~~p~~~~~~~ll~~~~~~~~~~---- 328 (681)
+.+++++|.+++.. =...+.+.|+...|-++.. -..+.+..+|......++..+.....-+
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45566666666643 1233445555544444332 2233455555555444444443332111
Q ss_pred -ccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhc
Q 047571 329 -LGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYET 373 (681)
Q Consensus 329 -~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 373 (681)
-......+-.......-++.....+...|.+.|++.+|...|-.-
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 111111122111122345566667777777777777777665443
No 365
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=65.92 E-value=13 Score=35.23 Aligned_cols=88 Identities=13% Similarity=-0.026 Sum_probs=59.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcC
Q 047571 587 IEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFG 665 (681)
Q Consensus 587 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 665 (681)
...|.++|.+++|+..|.+... +.| |++++..=..+|.+...+..|..=.+....- + ..-...|..-..+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999887 456 8888888888898888887776655544321 0 001233554455555567
Q ss_pred CHHHHHHHHHhcc
Q 047571 666 RIEEAHRFREMSS 678 (681)
Q Consensus 666 ~~~~A~~~~~~~~ 678 (681)
+..+|.+=++...
T Consensus 180 ~~~EAKkD~E~vL 192 (536)
T KOG4648|consen 180 NNMEAKKDCETVL 192 (536)
T ss_pred hHHHHHHhHHHHH
Confidence 7777776555543
No 366
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.01 E-value=38 Score=29.66 Aligned_cols=93 Identities=13% Similarity=-0.009 Sum_probs=64.2
Q ss_pred HHhccccchHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHH---HHHHHcCC
Q 047571 522 SVSGQLKALKLGKEIHGQVLKKDFASV----PFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAI---IEAYGYND 594 (681)
Q Consensus 522 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~ 594 (681)
.-+...|+++.|..-|...+..-.... .-.|..-..++.+.+.++.|..-..+..+-++.--.+| ..+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 456678999999999998887532222 22344445677788999998888777776443222233 44677788
Q ss_pred ChHHHHHHHHHHHhCCCCCCHH
Q 047571 595 LCQEALSLFDKMRNGGFTPNHF 616 (681)
Q Consensus 595 ~~~~a~~~~~~m~~~g~~p~~~ 616 (681)
.+++|++-|+++.+. .|...
T Consensus 183 k~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 183 KYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hHHHHHHHHHHHHHh--CcchH
Confidence 999999999999985 56543
No 367
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.18 E-value=56 Score=26.45 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHH
Q 047571 633 EACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFRE 675 (681)
Q Consensus 633 ~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 675 (681)
++.++|+.|... ++--. +..|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666554 43333 5566666666666777777776665
No 368
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=62.83 E-value=1.5e+02 Score=28.47 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhc
Q 047571 353 LVDMYCKCRDMNSAWRVFYET 373 (681)
Q Consensus 353 l~~~~~~~~~~~~a~~~~~~~ 373 (681)
...-||+-||-+.|.+.+...
T Consensus 110 kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 110 KAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHhccHHHHHHHHHHH
Confidence 444455555555555554443
No 369
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.51 E-value=2.2e+02 Score=30.40 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHhhhc
Q 047571 595 LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA----GFADEACRIFNVMSRG 644 (681)
Q Consensus 595 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~ 644 (681)
+.+.+...+.+....| +......|.+.|... .+++.|...+......
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 4555666666665544 444444444444333 2466676666655543
No 370
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.40 E-value=1.3e+02 Score=32.38 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 047571 433 KEIHAYAVKNQFLPN---VSIITSLMIMYSKCGVLDYSLKLFDEMEV 476 (681)
Q Consensus 433 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 476 (681)
..++.+|...--.|+ ..+...++-.|....+++...++.+.+..
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh
Confidence 344555554322333 23344444555555566666666655554
No 371
>PRK10941 hypothetical protein; Provisional
Probab=62.26 E-value=88 Score=29.41 Aligned_cols=81 Identities=10% Similarity=0.001 Sum_probs=61.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDIL 661 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 661 (681)
..+.+-.+|.+.++++.|++..+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+...-.|+.......+..+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 45677888899999999999999999853 33666676667778999999999998888876545666666666666555
Q ss_pred hh
Q 047571 662 TR 663 (681)
Q Consensus 662 ~~ 663 (681)
-.
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 43
No 372
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=61.37 E-value=60 Score=31.08 Aligned_cols=47 Identities=23% Similarity=0.174 Sum_probs=26.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHh-----CCCCCCHHH-HHHHHHHHh-ccCCHH
Q 047571 586 IIEAYGYNDLCQEALSLFDKMRN-----GGFTPNHFT-FKVLLSICN-QAGFAD 632 (681)
Q Consensus 586 l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~-~~~l~~~~~-~~g~~~ 632 (681)
....+...|+.+++.+++++..+ .|++|+..+ |..+..-|. ..|++.
T Consensus 121 ~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 121 IARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHH
Confidence 34445566777777777776665 566665543 444444333 335444
No 373
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.62 E-value=76 Score=24.82 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=20.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
-|..|+..|..+|.+++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477777777777888888887777766
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=60.38 E-value=2.5e+02 Score=30.42 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=31.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC--hhHHH-----HHHHHHhhcCCHHHHHHHHHhccC
Q 047571 619 KVLLSICNQAGFADEACRIFNVMSRGYKIEAL--EEHYL-----IMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
+.+...+. .|+..+..+......+.-.-.|| ...|. .+.+.|-..|+.++|.+...+.-.
T Consensus 539 ~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 539 NLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 33333344 67777655554433221011122 33442 334446777999999888776543
No 375
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.22 E-value=20 Score=24.57 Aligned_cols=45 Identities=20% Similarity=0.187 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 597 QEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 597 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+...++++.+.. ..-|-.---.++.++...|++++|.++++.+.+
T Consensus 7 ~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444443 133444444556666666666666666665544
No 376
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.64 E-value=19 Score=19.43 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHH
Q 047571 584 TAIIEAYGYNDLCQEALSLFDKMR 607 (681)
Q Consensus 584 ~~l~~~~~~~~~~~~a~~~~~~m~ 607 (681)
..+...+...|++++|...+++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444445555554444444
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.34 E-value=73 Score=23.63 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=14.7
Q ss_pred CCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCC
Q 047571 563 GFLECAKLVFDAVPVKGSITWTAIIEAYGYNDL 595 (681)
Q Consensus 563 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 595 (681)
|+.+.|.+++..+. .++..|...+.++...|.
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 44444444444444 444444444444444443
No 378
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.88 E-value=2.7e+02 Score=29.70 Aligned_cols=246 Identities=10% Similarity=0.035 Sum_probs=124.9
Q ss_pred HHhCCChHHHHHHHHHHHH-------cCcCCCHHHHHHHHHHhhccC-----ChhHHHHHHHHHHHhCCCCChhHHHHHH
Q 047571 388 YVSNGRLEQALRSIAWMQQ-------EGFRPDVVTVATVIPVCSQLK-----ALNHGKEIHAYAVKNQFLPNVSIITSLM 455 (681)
Q Consensus 388 ~~~~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 455 (681)
+....+.+.|+..|+...+ .| +......+-.+|.+.. +.+.|..++......| .|+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 3445677778777777765 44 2223333444444432 5566888887777776 33333332222
Q ss_pred HHHHh-cCChHHHHHHHhhCCCC-CcchHHHHHHHHH----hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccc
Q 047571 456 IMYSK-CGVLDYSLKLFDEMEVR-NVISWTAMIDSCI----ENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKA 529 (681)
Q Consensus 456 ~~~~~-~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~----~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 529 (681)
..... ..+...|.++|....+. .+..+-.+..+|. -..+...|...+++.-+.| .|...--...+..+.. +.
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 22222 23567788888776652 2222222222222 2236778888888888877 3332322333334444 66
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHH---Hh----cCCHHHHHHHhhhCCC-CChhhHHHHHHHHHcC----CChH
Q 047571 530 LKLGKEIHGQVLKKDFASVPFVAAENIKMY---GM----CGFLECAKLVFDAVPV-KGSITWTAIIEAYGYN----DLCQ 597 (681)
Q Consensus 530 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~----~~~~ 597 (681)
.+.+.-.+..+...+.+.....-..++... .. ..+.+.+...+..... -+......+...|... .+++
T Consensus 413 ~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~ 492 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPE 492 (552)
T ss_pred ccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChH
Confidence 666666665555544332222111121111 01 1244555555555544 2344445555544432 3577
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHhhhc
Q 047571 598 EALSLFDKMRNGGFTPNHFTFKVLLSIC----NQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 598 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~ 644 (681)
.|...|......+ ....-.+...+ .-.+ +..|.++++...+.
T Consensus 493 ~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 493 KAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 7888777777654 32222333322 2223 67888888876553
No 379
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.71 E-value=22 Score=33.42 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHH
Q 047571 481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARML 521 (681)
Q Consensus 481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 521 (681)
-|+..|..-.+.||+++|+++++|.++.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 36788999999999999999999999999877666665443
No 380
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.65 E-value=1.8e+02 Score=27.25 Aligned_cols=48 Identities=6% Similarity=0.134 Sum_probs=31.3
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHH-------HHHHHHhccccchHHH
Q 047571 486 IDSCIENGRLDDALGVFRSMQLSKHRPDSVAM-------ARMLSVSGQLKALKLG 533 (681)
Q Consensus 486 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-------~~ll~~~~~~~~~~~a 533 (681)
.+-..+.+++++|+..|.+....|+..+..+. ..+...|...|+...-
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 34456778889999999999998887776543 2334444555544433
No 381
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.54 E-value=53 Score=21.06 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=22.8
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 047571 490 IENGRLDDALGVFRSMQLSKHRPDSVAMARMLS 522 (681)
Q Consensus 490 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 522 (681)
.+.|-.+++...+++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666777777777777777777766666554
No 382
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=55.18 E-value=68 Score=26.16 Aligned_cols=61 Identities=10% Similarity=0.021 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCC---ChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 583 WTAIIEAYGYND---LCQEALSLFDKMRNGGFTP--NHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 583 ~~~l~~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
--.+.+++.+.. +..+.+.++++..+.. .| .......|.-++.+.|+++.++++.+.+.+.
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 334555666543 4667788888887633 33 3445555666788888888888888877654
No 383
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.87 E-value=1e+02 Score=24.14 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047571 380 LWTALMSGYVSNGRLEQALRSIAWMQQ 406 (681)
Q Consensus 380 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 406 (681)
-|..|+.-|...|.+++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888887766
No 384
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.72 E-value=25 Score=33.11 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=31.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKV 620 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 620 (681)
-|+..|....+.||+++|+.++++.++.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 478889999999999999999999999987655555543
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.50 E-value=80 Score=29.61 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhh
Q 047571 109 TFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVF 165 (681)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 165 (681)
+++.+.+.|..+|.+.+|.++.+.....+ +.+...+-.|+..+...|+--.|.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 34445555666666666666666665555 555555666666666666644443333
No 386
>PRK13342 recombination factor protein RarA; Reviewed
Probab=54.14 E-value=2.6e+02 Score=28.54 Aligned_cols=101 Identities=10% Similarity=0.003 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC---CCCCcchHHHHH
Q 047571 410 RPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEM---EVRNVISWTAMI 486 (681)
Q Consensus 410 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li 486 (681)
..+......++..+ .|+...+..+++.+...+...+. +...+++... ...+......++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555554433 68888888888776543211121 2222222221 112223344445
Q ss_pred HHHHh---cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcccc
Q 047571 487 DSCIE---NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLK 528 (681)
Q Consensus 487 ~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 528 (681)
.++.+ .++.+.|+..+..|.+.|..|....-..++.++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55544 5889999999999999998888666655555555544
No 387
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.82 E-value=30 Score=23.73 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 652 EHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 652 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
...-.+|.+|...|+.++|.++++++
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455566666777777777666654
No 388
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.80 E-value=51 Score=21.13 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=15.3
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 047571 83 ARQNKLKEALVILDYMDQQGIPVNVTTFNALI 114 (681)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 114 (681)
.++|-..++..+++.|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34444444555555555555444444444443
No 389
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.79 E-value=51 Score=30.64 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=32.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhcCC----CCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571 620 VLLSICNQAGFADEACRIFNVMSRGYK----IEALEEHYLIMIDILTRFGRIEEAHRFR 674 (681)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 674 (681)
.+..-|.+.|++++|.++|+.+...+. ..+...+...+..++.+.|+.++...+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455566666777777777766643221 2233455566666777777777666644
No 390
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.73 E-value=2.4e+02 Score=28.08 Aligned_cols=88 Identities=15% Similarity=0.039 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhCCC------CChhhHHHHHHHHHcCCChHHHHHHHHHHHhC---------CCCCCHH
Q 047571 552 AAENIKMYGMCGFLECAKLVFDAVPV------KGSITWTAIIEAYGYNDLCQEALSLFDKMRNG---------GFTPNHF 616 (681)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------g~~p~~~ 616 (681)
+.-+..-|..+|+++.|.+.+.++.. .-+..|-.+|..-.-.|+|........+..+. .+++-..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 34455556666666666666665443 01223444444444455555555444444332 1233344
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh
Q 047571 617 TFKVLLSICNQAGFADEACRIFNVM 641 (681)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (681)
++..|...+.+ ++..|.+.|-..
T Consensus 233 C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 233 CAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhC
Confidence 45445444433 566666555433
No 391
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.65 E-value=1.8e+02 Score=27.59 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=39.9
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047571 499 LGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYG 560 (681)
Q Consensus 499 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 560 (681)
.++|+.|.+.++.|.-..|..+.-.+.+.=.+.....+|+.+... +.-+..++..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 467777888888888888777777777777777888888877652 333555555554
No 392
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.87 E-value=44 Score=31.62 Aligned_cols=106 Identities=8% Similarity=0.004 Sum_probs=59.8
Q ss_pred cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC--ChhhHH--HHHHHHHcCCChHHHHH
Q 047571 526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVK--GSITWT--AIIEAYGYNDLCQEALS 601 (681)
Q Consensus 526 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~--~l~~~~~~~~~~~~a~~ 601 (681)
...-+.+|.++++...+.+ ...|+. -+.+...|...+| +.+. ++.+|- .|.-+..+.|+..+|.+
T Consensus 228 Ea~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~~da------~~rRDtnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQHEA------QLRRDTNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccchhh------hhhcccchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 3445677888888777653 122221 1111122222222 2222 233442 23333346899999999
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 602 LFDKMRNGGFTPN--HFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 602 ~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.++.+.+. ++.. -..-..|+.+|....-+.+...++-+.-+
T Consensus 297 ~~RDL~ke-~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 297 IMRDLMKE-FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99998764 2221 23456789999888888888777765543
No 393
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.50 E-value=1e+02 Score=22.89 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=20.9
Q ss_pred hcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChh
Q 047571 460 KCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLD 496 (681)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 496 (681)
..|+.+.|.+++..+. ..+..|..++.++...|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 3455666666666666 55555666666665555433
No 394
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.22 E-value=26 Score=36.05 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCCCChh--hHHHHHHHhh-ccCchhhhHHHHHHHHHhCCCCC---cHHHhHHHHHHHhcCChHHHHHHHh
Q 047571 196 FNYMKMRELGVQLNVY--TFSCVIKSFA-GASALMQGLKTHALLIKNGFVDY---LILRTSLIDMYFKCGKIKLARRVFD 269 (681)
Q Consensus 196 ~~~~~m~~~g~~p~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~ 269 (681)
+....|...|.+-+.. -+..+...|- ..|+..+|........- +.++ ....-++...+.+.|...+|--++.
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~h--f~~~h~kdi~lLSlaTiL~RaG~sadA~iILh 273 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALH--FSSRHNKDIALLSLATVLHRAGFSADAAVILH 273 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhh--hCCcccccchhhhHHHHHHHcccccchhheee
Confidence 4444455555433332 3344444443 45777777766544332 2222 1233455666778888777777665
Q ss_pred ccCCC-Chh--hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047571 270 ETGDR-DIV--VWGSMIAGFAHNRLRWEALDCARWMIREG 306 (681)
Q Consensus 270 ~~~~~-~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g 306 (681)
...+. +.. -+-.+...++..+.+...+..|+...+.|
T Consensus 274 AA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 274 AALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred hhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccC
Confidence 54431 211 14455666666777777777776666544
No 395
>PHA03100 ankyrin repeat protein; Provisional
Probab=49.86 E-value=3e+02 Score=28.62 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=7.6
Q ss_pred cCCChhHHHHhhhh
Q 047571 154 SCGSFEDAEKVFDE 167 (681)
Q Consensus 154 ~~g~~~~a~~~~~~ 167 (681)
..|+.+-+..+++.
T Consensus 117 ~~~~~~iv~~Ll~~ 130 (480)
T PHA03100 117 KSNSYSIVEYLLDN 130 (480)
T ss_pred ccChHHHHHHHHHc
Confidence 55565555555543
No 396
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=49.62 E-value=4.6e+02 Score=30.17 Aligned_cols=267 Identities=10% Similarity=-0.046 Sum_probs=143.3
Q ss_pred HHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCC
Q 047571 266 RVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSE 345 (681)
Q Consensus 266 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 345 (681)
.+.+.+.++|...-...+..+.+.+..+ +...+....+ .+|...-...+.++...+........+....+. +
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~----~ 696 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS----P 696 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC----C
Confidence 4444455667766666677666666533 4444444443 233333334444444433221122222222222 4
Q ss_pred CchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhc
Q 047571 346 ELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQ 425 (681)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 425 (681)
|..+....+..+...+.-+ ...+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 5555566666665543211 2344555666777666667777776655432 12222 23455555666666666
Q ss_pred cCChhH-HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH-HHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 047571 426 LKALNH-GKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL-KLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFR 503 (681)
Q Consensus 426 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 503 (681)
.+..+. +...+..+.. .++..+-...+.++.+.|..+.+. .+...+.+++...-...+.++.+.+. +++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 655432 2333333332 456777777888888888766553 34444555666565666777777765 45666666
Q ss_pred HhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571 504 SMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM 558 (681)
Q Consensus 504 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (681)
.+.+ .|+...-...+.++.+.+....+...+....+ ..+..+-.....+
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~a 893 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRA 893 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 6654 56666666777777775444566666666665 2344444443333
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.41 E-value=2.6e+02 Score=28.05 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=43.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChh--hHHHHHHHHH--hcCChhHHHHHHHHHHHhC
Q 047571 77 KDIQRFARQNKLKEALVILDYMDQQGIPVNVT--TFNALITACV--RTRSLVEGRLIHTHIRING 137 (681)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~ 137 (681)
..+..+...+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++.+|.+.++......
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 3456667899999999999999887 666555 4444445544 3667889999998877653
No 398
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.39 E-value=1.2e+02 Score=23.51 Aligned_cols=75 Identities=16% Similarity=0.014 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571 595 LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFR 674 (681)
Q Consensus 595 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 674 (681)
..++|..+.+-+...+. -....-..-+..+...|+|++| +.. -.. ...||...|.+| +-.+.|-.+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~-~~~--~~~pdL~p~~AL--~a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLL-PQC--HCYPDLEPWAAL--CAWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHH-HTT--S--GGGHHHHHH--HHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHh-ccc--CCCccHHHHHHH--HHHhhccHHHHHHHH
Confidence 45666666666665432 1111111223345566666666 111 111 334555445444 335566666666665
Q ss_pred Hhc
Q 047571 675 EMS 677 (681)
Q Consensus 675 ~~~ 677 (681)
.++
T Consensus 93 ~rl 95 (116)
T PF09477_consen 93 TRL 95 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 399
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=49.09 E-value=2.1e+02 Score=26.07 Aligned_cols=138 Identities=11% Similarity=0.052 Sum_probs=79.7
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHH
Q 047571 453 SLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKL 532 (681)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 532 (681)
.-+..|.+.-++.-|....+++.+|=..-+ + +--|.+..+.+---++.+-....++.-+..-...++ +...|+..+
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEPIQSRC-A-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQ 210 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEPIQSRC-A-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQ 210 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhhHHhhh-H-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHH
Confidence 345667777777777766666665421111 1 112333333332233333344445555444444443 345677777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047571 533 GKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT 612 (681)
Q Consensus 533 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 612 (681)
|...++.-...- -.-.++.+|+-.-+|.+.....++..|. .+++++|.++++++.+.|+.
T Consensus 211 alNnLQst~~g~-------------------g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgys 270 (333)
T KOG0991|consen 211 ALNNLQSTVNGF-------------------GLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYS 270 (333)
T ss_pred HHHHHHHHhccc-------------------cccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCC
Confidence 766665443310 1112455666666677777777777765 57899999999999999998
Q ss_pred CC
Q 047571 613 PN 614 (681)
Q Consensus 613 p~ 614 (681)
|.
T Consensus 271 p~ 272 (333)
T KOG0991|consen 271 PE 272 (333)
T ss_pred HH
Confidence 84
No 400
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.08 E-value=1.3e+02 Score=24.16 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 047571 91 ALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRIN 136 (681)
Q Consensus 91 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (681)
..+-++.+...++-|++......+++|.+.+|+..|.++|+-.+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4445555566667777777788888888888888888887776643
No 401
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.64 E-value=1.1e+02 Score=25.58 Aligned_cols=64 Identities=9% Similarity=0.125 Sum_probs=45.2
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCC
Q 047571 93 VILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGS 157 (681)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 157 (681)
++.+.+.+.|.+++.. -..++..+...++.-.|.++++.+.+.++..+..|-..-++.+...|=
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3445566777765544 356677777777778899999999988877777666666666666653
No 402
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.23 E-value=3e+02 Score=27.65 Aligned_cols=18 Identities=6% Similarity=0.028 Sum_probs=8.7
Q ss_pred hcCChhHHHHHHHHhHhC
Q 047571 491 ENGRLDDALGVFRSMQLS 508 (681)
Q Consensus 491 ~~~~~~~A~~~~~~m~~~ 508 (681)
..+++..|.++++++...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 344455555555554443
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.22 E-value=53 Score=29.03 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=21.5
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 578 KGSITWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 578 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
|+...|..++.++...|+.++|.++.+++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666667777777777777777766666
No 404
>PF13934 ELYS: Nuclear pore complex assembly
Probab=46.53 E-value=2.3e+02 Score=25.85 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=50.0
Q ss_pred cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC--ChhhHHHHHHHHHcCCChHHHHHHH
Q 047571 526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVK--GSITWTAIIEAYGYNDLCQEALSLF 603 (681)
Q Consensus 526 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 603 (681)
..++++.|.+.+..- ...+.....++..+...|+.+.|..+++....+ +......++.. ..++.+.+|...-
T Consensus 90 D~~~~~~A~~~L~~p-----s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLSHP-----SLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhCCC-----CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 346666666665221 111233345666666677777777777765552 22223333333 4457777777666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccC
Q 047571 604 DKMRNGGFTPNHFTFKVLLSICNQAG 629 (681)
Q Consensus 604 ~~m~~~g~~p~~~~~~~l~~~~~~~g 629 (681)
+...+. -....+..++..+....
T Consensus 164 R~~~~~---~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 164 RSYPDE---LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HhCchh---hhHHHHHHHHHHHHHHh
Confidence 554431 11345555555555443
No 405
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.23 E-value=1.6e+02 Score=23.76 Aligned_cols=44 Identities=11% Similarity=0.227 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047571 597 QEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNV 640 (681)
Q Consensus 597 ~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (681)
+.+.++|+.|..+|+-- -+..|......+...|++++|.++++.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 38999999999988765 567788888899999999999999974
No 406
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.15 E-value=1.8e+02 Score=24.22 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=32.4
Q ss_pred CCcchHHHHHHHHHhcCC-hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccc
Q 047571 477 RNVISWTAMIDSCIENGR-LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQL 527 (681)
Q Consensus 477 ~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 527 (681)
.+..+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 345567777776644443 334556667777666777777777777776655
No 407
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.85 E-value=1.5e+02 Score=23.11 Aligned_cols=79 Identities=10% Similarity=0.032 Sum_probs=40.1
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHh
Q 047571 428 ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQL 507 (681)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 507 (681)
..++|..|.+.+...+. -...+--+-+..+.+.|++++|...=.....||...|-+|- -.+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 34556666666555442 22222223344556677777774433344446666665543 3466777777777766665
Q ss_pred CC
Q 047571 508 SK 509 (681)
Q Consensus 508 ~g 509 (681)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 408
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.77 E-value=2.5e+02 Score=25.67 Aligned_cols=69 Identities=14% Similarity=-0.054 Sum_probs=30.4
Q ss_pred HHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC-hhhHHHHHHHHH
Q 047571 520 MLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG-SITWTAIIEAYG 591 (681)
Q Consensus 520 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~ 591 (681)
++.++...|+.+.|..++..+.-.. .+......++. ...++.+.+|..+-+....+. ...+..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~-~La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFV-ALANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHH-HHHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 4445555566666666655432110 01111122222 244566666666655544422 334444444444
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.74 E-value=1.1e+02 Score=23.15 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=32.2
Q ss_pred HcCCChHHHHHHHHHHHh----CCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 591 GYNDLCQEALSLFDKMRN----GGFTPN----HFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 591 ~~~~~~~~a~~~~~~m~~----~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.+.|++.+|.+.+.+..+ .+.... ......+.......|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457787777666555443 222221 22333455566777899999888887755
No 410
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=43.87 E-value=3.4e+02 Score=26.95 Aligned_cols=194 Identities=12% Similarity=0.099 Sum_probs=102.2
Q ss_pred cCChhHHHHHHHHHHH-----hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHH
Q 047571 426 LKALNHGKEIHAYAVK-----NQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALG 500 (681)
Q Consensus 426 ~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 500 (681)
.++.+.|.+-+-...+ .+...+..++..++..|...++|+.--+.+ ....-+.|+...|..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~ 90 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQ 90 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHH
Confidence 4555555544333222 233445556666777777777766543322 122335566665554
Q ss_pred --HHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571 501 --VFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA--S-VPFVAAENIKMYGMCGFLECAKLVFDAV 575 (681)
Q Consensus 501 --~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 575 (681)
+.+-|.-..-.||..|-..++..+... .+..+- . -...-..+.+.+..+|++++|..++.+.
T Consensus 91 ~Mvq~~~~y~~~~~d~~~k~~li~tLr~V-------------tegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el 157 (439)
T KOG1498|consen 91 SMVQQAMTYIDGTPDLETKIKLIETLRTV-------------TEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCEL 157 (439)
T ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHHh-------------hcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 223333333356666555555443221 111110 0 1223345667788888888888888776
Q ss_pred CCCChhhHHHH------------HHHHHcCCChHHHHHHHHHHHhCCC-CCCH-----HHHHHHHHHHhccCCHHHHHHH
Q 047571 576 PVKGSITWTAI------------IEAYGYNDLCQEALSLFDKMRNGGF-TPNH-----FTFKVLLSICNQAGFADEACRI 637 (681)
Q Consensus 576 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~-----~~~~~l~~~~~~~g~~~~A~~~ 637 (681)
+- .||.++ ++.|...+|+-.|--+-++....-+ .||. .-|+.++......+.+=.+-+.
T Consensus 158 ~V---ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~ 234 (439)
T KOG1498|consen 158 QV---ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRS 234 (439)
T ss_pred ch---hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 54 233222 4556667777777666665554322 2332 3466666666666666667777
Q ss_pred HHHhhhcCCCCC
Q 047571 638 FNVMSRGYKIEA 649 (681)
Q Consensus 638 ~~~~~~~~~~~~ 649 (681)
++.+.....+.-
T Consensus 235 Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 235 YRAIYDTGNVKE 246 (439)
T ss_pred HHHHhccccccc
Confidence 666655433333
No 411
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.79 E-value=3.2e+02 Score=26.75 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=12.6
Q ss_pred hhccCChhHHHHHHHHHHH
Q 047571 423 CSQLKALNHGKEIHAYAVK 441 (681)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~ 441 (681)
|...++++.|..++...+.
T Consensus 193 ciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVT 211 (422)
T ss_pred eeccccHHHHHHHHHHHHh
Confidence 3445677888877776654
No 412
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.80 E-value=83 Score=23.76 Aligned_cols=54 Identities=22% Similarity=0.161 Sum_probs=34.8
Q ss_pred HhccCCHHHHHHHHHHhhhcC---CCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 625 CNQAGFADEACRIFNVMSRGY---KIEA----LEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 625 ~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
..+.|++..|.+.+...-+.. +... -....-.+.......|+.++|.+.+++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 457899999966666553321 2211 12333446677888999999999988753
No 413
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.51 E-value=1.9e+02 Score=27.51 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHH----------HcCCcChhhHHH
Q 047571 127 RLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAV----------IAGKKRYRGVLF 196 (681)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~----------~~~~~~~~~a~~ 196 (681)
.++++.+.+.++.|.-+.+..+.-.+...=.+.+++.+++.+...... |..++..|+ -.| ++...++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~Ll~iCcsmlil~Re~il~~--DF~~nmk 339 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDFLLYICCSMLILVRERILEG--DFTVNMK 339 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHhc--chHHHHH
Confidence 466777777777777777777777777777777777777766532111 333333332 345 7777666
Q ss_pred HHHH
Q 047571 197 NYMK 200 (681)
Q Consensus 197 ~~~~ 200 (681)
+++.
T Consensus 340 LLQ~ 343 (370)
T KOG4567|consen 340 LLQN 343 (370)
T ss_pred HHhc
Confidence 6554
No 414
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.01 E-value=3.3e+02 Score=28.43 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCC--CcchH---HHHHHHHHhcCChhHHHHHHHHhHhC
Q 047571 452 TSLMIMYSKCGVLDYSLKLFDEMEVR--NVISW---TAMIDSCIENGRLDDALGVFRSMQLS 508 (681)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~ 508 (681)
..++.-|.+.+++++|..++..|.-. ....| +.+.+.+.+..--++.+..++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 45677888889999999998888642 22333 33344445544344455555555443
No 415
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.47 E-value=80 Score=33.78 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=26.5
Q ss_pred HHHHHHHHhHhCCCCCC---HHHHHHHHHHhccccchHHHHHHHHHHHH
Q 047571 497 DALGVFRSMQLSKHRPD---SVAMARMLSVSGQLKALKLGKEIHGQVLK 542 (681)
Q Consensus 497 ~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 542 (681)
+--..+.+|+.+--.|+ ..+...++-.|....+++...++.+.+.+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh
Confidence 33445566665433333 23455566666666777777777766665
No 416
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.27 E-value=1.5e+02 Score=22.21 Aligned_cols=54 Identities=17% Similarity=0.065 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC
Q 047571 612 TPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGR 666 (681)
Q Consensus 612 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 666 (681)
+.|...-..+...+...|++++|++.+-.+.+. .... +...-..|+.++.-.|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~-dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR-DRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CccccccHHHHHHHHHHHHcCC
Confidence 446677777888888888888888888777665 2222 34555666677666665
No 417
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=41.23 E-value=2e+02 Score=23.61 Aligned_cols=67 Identities=10% Similarity=-0.028 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHhccCCH---HHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 612 TPNHFTFKVLLSICNQAGFA---DEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 612 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
.++..+--.+.+++.+..+. .+.+.+++.+.+.-...-+-+...-|.-++.|.|+++.++++++.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 67777777888999888654 46677888777521112223444455667889999999999988764
No 418
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.17 E-value=4.2e+02 Score=27.25 Aligned_cols=105 Identities=13% Similarity=-0.016 Sum_probs=70.0
Q ss_pred HHHHhcCCHHHHHHHhhhCCC---CC---------hhhHHHHHHHHHcCCChHHHHHHHHHHHh-------CCCCCCH--
Q 047571 557 KMYGMCGFLECAKLVFDAVPV---KG---------SITWTAIIEAYGYNDLCQEALSLFDKMRN-------GGFTPNH-- 615 (681)
Q Consensus 557 ~~~~~~g~~~~a~~~~~~~~~---~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~g~~p~~-- 615 (681)
+.+--.|++.+|.+++..... ++ ...||.|.-.+.+.|.+.-+..+|.+..+ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 344556778887777654332 22 23467777777777777777777776653 4655531
Q ss_pred --------HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh
Q 047571 616 --------FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTR 663 (681)
Q Consensus 616 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 663 (681)
.......-.|...|++-.|.+.|.+..+. +..++..|-.|..++.-
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 12223445678899999999999998875 45556889999998863
No 419
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=40.87 E-value=2.2e+02 Score=27.46 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=11.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHh
Q 047571 656 IMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 656 ~l~~~~~~~g~~~~A~~~~~~ 676 (681)
.-.+.+.+.|+.++|..-|++
T Consensus 370 ~RadlL~rLgr~~eAr~aydr 390 (415)
T COG4941 370 ARADLLARLGRVEEARAAYDR 390 (415)
T ss_pred HHHHHHHHhCChHHHHHHHHH
Confidence 334455555666666555544
No 420
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.68 E-value=33 Score=27.74 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=24.3
Q ss_pred HhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHH
Q 047571 389 VSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPV 422 (681)
Q Consensus 389 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 422 (681)
-+.|.-.+|..+|+.|.+.|-+||. ++.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456677899999999999999886 4455554
No 421
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=40.56 E-value=95 Score=20.48 Aligned_cols=21 Identities=10% Similarity=-0.137 Sum_probs=11.1
Q ss_pred HHHHcCCChHHHHHHHHHHHh
Q 047571 588 EAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 588 ~~~~~~~~~~~a~~~~~~m~~ 608 (681)
-++.+.|++++|.+..+.+.+
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344555555555555555555
No 422
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.56 E-value=3e+02 Score=25.16 Aligned_cols=24 Identities=8% Similarity=0.315 Sum_probs=17.1
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCC
Q 047571 591 GYNDLCQEALSLFDKMRNGGFTPN 614 (681)
Q Consensus 591 ~~~~~~~~a~~~~~~m~~~g~~p~ 614 (681)
...+++.+|+++|++.....+..+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 346788889999988877644433
No 423
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.42 E-value=2.8e+02 Score=25.18 Aligned_cols=95 Identities=13% Similarity=-0.054 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CChhhHH--HHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHH
Q 047571 546 ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KGSITWT--AIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTF 618 (681)
Q Consensus 546 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 618 (681)
.+...-++.|+--|.-...+.+|...|..-.. .+..+++ .-|......|++++|++...++...-+.-|...+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 33444444554444444444444444433222 2233332 3456667788888888777776543333344333
Q ss_pred HHHHH----HHhccCCHHHHHHHHHH
Q 047571 619 KVLLS----ICNQAGFADEACRIFNV 640 (681)
Q Consensus 619 ~~l~~----~~~~~g~~~~A~~~~~~ 640 (681)
-.|.. =+.+.|..++|+++.+.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33322 13566777777777663
No 424
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.38 E-value=73 Score=25.17 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=30.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 047571 78 DIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSL 123 (681)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 123 (681)
++..+...+..-.|.++++.+.+.+...+..|....|+.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555556666667777777777766666666666666666666643
No 425
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=38.88 E-value=1.1e+02 Score=26.45 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCC-----------HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh
Q 047571 596 CQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGF-----------ADEACRIFNVMSRGYKIEALEEHYLIMIDILTR 663 (681)
Q Consensus 596 ~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 663 (681)
+++|+.-|++... +.| ...++..+..++...+. +++|.+.|+...+. .|+.+.|..-++...+
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE---DPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHh
Q ss_pred c
Q 047571 664 F 664 (681)
Q Consensus 664 ~ 664 (681)
.
T Consensus 126 a 126 (186)
T PF06552_consen 126 A 126 (186)
T ss_dssp H
T ss_pred h
No 426
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=38.38 E-value=4.4e+02 Score=26.77 Aligned_cols=236 Identities=13% Similarity=0.023 Sum_probs=131.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 047571 384 LMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV 463 (681)
Q Consensus 384 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (681)
-++++...| ..+...+-...... ++...+.....++....+...+..+.+.+. .++..+-.....++.+.+.
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCc
Confidence 377777777 56777666666432 333444444444443333222333333332 3455567778888888888
Q ss_pred hHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc
Q 047571 464 LDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK 543 (681)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 543 (681)
.+-...+..-+..++...-...+.++...+. .+...+....+ .++...-..-+.++...+..+..-. +..+..
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~-L~~al~- 188 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSEST-LRLYLR- 188 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHH-HHHHHc-
Confidence 7777666666666666665566666665442 23344444443 5566666666666666665433333 223322
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHhhh-CCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047571 544 DFASVPFVAAENIKMYGMCGFLECAKLVFDA-VPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLL 622 (681)
Q Consensus 544 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 622 (681)
..++.+-..-+.+....|. ++|...+.. ...++......+...+...| .+++++.+..+.+. ++ +-...+
T Consensus 189 --d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~-~~~a~~~L~~ll~d---~~--vr~~a~ 259 (410)
T TIGR02270 189 --DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG-GPDAQAWLRELLQA---AA--TRREAL 259 (410)
T ss_pred --CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCC-chhHHHHHHHHhcC---hh--hHHHHH
Confidence 4566666667777777777 455555444 44455544444444443333 33666666666553 22 556677
Q ss_pred HHHhccCCHHHHHHHHHHhhh
Q 047571 623 SICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 623 ~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.++.+.|+..-+--+.+.|.+
T Consensus 260 ~AlG~lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 260 RAVGLVGDVEAAPWCLEAMRE 280 (410)
T ss_pred HHHHHcCCcchHHHHHHHhcC
Confidence 777788887665555555543
No 427
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.32 E-value=3.6e+02 Score=25.71 Aligned_cols=156 Identities=12% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCC
Q 047571 91 ALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSS 170 (681)
Q Consensus 91 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 170 (681)
|.++|+...... ..+.++.++.+.+.-+.-.++| +|+..+-......+...|--+-..-.=.+
T Consensus 186 ~~~lFk~~~~Ek------~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q--- 248 (412)
T KOG2297|consen 186 AVKLFKEWLVEK------DINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQ--- 248 (412)
T ss_pred HHHHHHHHHhhc------cHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHH---
Q ss_pred CCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhH
Q 047571 171 ESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTS 250 (681)
Q Consensus 171 ~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 250 (681)
....+.+-+.+ .|..-..+...+++......+-.+..--|+..+...
T Consensus 249 -------------------~~~~a~kElq~--------------~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~i 295 (412)
T KOG2297|consen 249 -------------------QSEGARKELQK--------------ELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGI 295 (412)
T ss_pred -------------------HHHHHHHHHHH--------------HHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEee
Q ss_pred HHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHH
Q 047571 251 LIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEAL 296 (681)
Q Consensus 251 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 296 (681)
+-++......|.+-.++..+-.-+....|..|+.+++..|+.+-.+
T Consensus 296 vWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 296 VWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred eHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHH
No 428
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.14 E-value=1.4e+02 Score=29.91 Aligned_cols=59 Identities=17% Similarity=0.053 Sum_probs=27.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcC-----CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 619 KVLLSICNQAGFADEACRIFNVMSRGY-----KIEA-LEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
..|++..+-.||+..|+++++.+.-.. .+.+ ...++..++-+|.-.+++.+|.+.|..+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555431100 1111 1344555555555555555555555543
No 429
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=38.11 E-value=2.2e+02 Score=23.08 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=23.1
Q ss_pred HHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHH
Q 047571 634 ACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFRE 675 (681)
Q Consensus 634 A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 675 (681)
..++|..|.+. ++--. +..|......+-..|++.+|.++++
T Consensus 82 p~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555443 44333 4455566666666666666666654
No 430
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=37.59 E-value=1.9e+02 Score=29.05 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047571 583 WTAIIEAYGYNDLCQEALSLFDKMRNG------GFTP-NHFTFKVLLSICNQAGFADEACRIFNVM 641 (681)
Q Consensus 583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (681)
.-.|++.++-.||+..|+++++.+.-. .+++ ...++..+.-+|.-.+++.+|++.|..+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777776666643211 1222 3455666666677777777777766654
No 431
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.99 E-value=75 Score=26.53 Aligned_cols=47 Identities=6% Similarity=0.059 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 047571 76 YKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRS 122 (681)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 122 (681)
..+++.+.+.++.-.|.++++.+.+.+...+..|-...|..+...|-
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 55788888888889999999999998877788887777787777764
No 432
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=36.37 E-value=71 Score=25.48 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=23.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 047571 77 KDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTR 121 (681)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 121 (681)
.++..+...+.+-.|.++++.|.+.|...+..|....|..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344555555555556666666665555555555555555555544
No 433
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.91 E-value=4.1e+02 Score=25.70 Aligned_cols=186 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHhcCC--hHHHHHHHhhC--CCCCcchHHHHHHHHHhcC-----ChhHHHHHHHH---------hHhCCCCCC--H
Q 047571 455 MIMYSKCGV--LDYSLKLFDEM--EVRNVISWTAMIDSCIENG-----RLDDALGVFRS---------MQLSKHRPD--S 514 (681)
Q Consensus 455 ~~~~~~~g~--~~~a~~~~~~~--~~~~~~~~~~li~~~~~~~-----~~~~A~~~~~~---------m~~~g~~p~--~ 514 (681)
+.++++.|. +..+.+++..+ .+++...|..++..+.... ..+.....|+. +.+.|..+. .
T Consensus 45 ~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 124 (324)
T PF11838_consen 45 LFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGE 124 (324)
T ss_dssp HHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--S
T ss_pred HHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccc
Q ss_pred HHHHHHHHHh-ccccc-----hHHHHHHHHHHHHcCC----CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-CChhhH
Q 047571 515 VAMARMLSVS-GQLKA-----LKLGKEIHGQVLKKDF----ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-KGSITW 583 (681)
Q Consensus 515 ~~~~~ll~~~-~~~~~-----~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~ 583 (681)
......++.. ....- .+.+.+.++.....+. ..++.....+.....+.|..++...+++.... ++....
T Consensus 125 ~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k 204 (324)
T PF11838_consen 125 DHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEK 204 (324)
T ss_dssp CHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHH
T ss_pred cHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHH
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHH
Q 047571 584 TAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC-NQAGFADEACRIFNV 640 (681)
Q Consensus 584 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~ 640 (681)
..++.+++...+.+...++++.....+..++......+.... ...--.+.+.+++..
T Consensus 205 ~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 205 RRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 434
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=35.88 E-value=6.7e+02 Score=28.10 Aligned_cols=47 Identities=19% Similarity=0.039 Sum_probs=23.0
Q ss_pred cCCHHHHHHHHhhcCC--------CChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047571 360 CRDMNSAWRVFYETEE--------RNEILWTALMSGYVSNGRLEQALRSIAWMQQ 406 (681)
Q Consensus 360 ~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 406 (681)
.|+++.|.++-+.... ..++.+..+..+..-.|++++|..+..+..+
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 3555555554443322 1334455555555555566655555554433
No 435
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.45 E-value=5.9e+02 Score=29.39 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q 047571 382 TALMSGYVSNGRLEQALRSIAW 403 (681)
Q Consensus 382 ~~li~~~~~~~~~~~A~~~~~~ 403 (681)
-..++.+...+++.+|+.+.++
T Consensus 698 L~~ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 698 LAGIRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred HHHHHHHHhhccHHHHHHHHHH
Confidence 4456677788888888765443
No 436
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.89 E-value=1.9e+02 Score=21.46 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 047571 434 EIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEME 475 (681)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 475 (681)
++|+-....|+..|..+|..+++.+.-.=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666777777777766666555545555555555543
No 437
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=34.82 E-value=6.8e+02 Score=27.88 Aligned_cols=24 Identities=4% Similarity=-0.280 Sum_probs=18.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 047571 281 SMIAGFAHNRLRWEALDCARWMIR 304 (681)
Q Consensus 281 ~li~~~~~~~~~~~a~~~~~~m~~ 304 (681)
.++..+.+.|+.+.|.+++++...
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh
Confidence 456667788888888888877654
No 438
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=34.68 E-value=1.7e+02 Score=21.08 Aligned_cols=14 Identities=29% Similarity=0.461 Sum_probs=6.3
Q ss_pred cCCHHHHHHHHHHh
Q 047571 628 AGFADEACRIFNVM 641 (681)
Q Consensus 628 ~g~~~~A~~~~~~~ 641 (681)
.|++++|+++|...
T Consensus 19 ~gny~eA~~lY~~a 32 (75)
T cd02680 19 KGNAEEAIELYTEA 32 (75)
T ss_pred hhhHHHHHHHHHHH
Confidence 34444444444443
No 439
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=34.58 E-value=5.1e+02 Score=26.35 Aligned_cols=233 Identities=10% Similarity=-0.050 Sum_probs=121.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChh
Q 047571 353 LVDMYCKCRDMNSAWRVFYETE--ERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALN 430 (681)
Q Consensus 353 l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 430 (681)
-++++...| ..+...+.... ..+...+.....++....+......+.+.+. .++...-..+..++...+...
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~~~ 117 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGGRQ 117 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCchH
Confidence 477777778 45666554444 2334444444444433332222333333332 246666777888888877766
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCC
Q 047571 431 HGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKH 510 (681)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 510 (681)
....+...+ + .++..+....+.++...+. +-...+..-+..+|...-..-+.++...+.. ++...+..+..
T Consensus 118 a~~~L~~~L-~---~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-~a~~~L~~al~--- 188 (410)
T TIGR02270 118 AEPWLEPLL-A---ASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRR-LSESTLRLYLR--- 188 (410)
T ss_pred HHHHHHHHh-c---CCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-cchHHHHHHHc---
Confidence 655544443 2 2344455555566665432 2222333334456666666777777777764 34444444433
Q ss_pred CCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-CChhhHHHHHHH
Q 047571 511 RPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-KGSITWTAIIEA 589 (681)
Q Consensus 511 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~ 589 (681)
.+|...-..-+.+....|. +.|......... .+.......+.......|.. ++...+..+.. ++ +-...+.+
T Consensus 189 d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~~~~-~a~~~L~~ll~d~~--vr~~a~~A 261 (410)
T TIGR02270 189 DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVAGGP-DAQAWLRELLQAAA--TRREALRA 261 (410)
T ss_pred CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhCCch-hHHHHHHHHhcChh--hHHHHHHH
Confidence 4566666666677777777 555554444222 22222333333344333433 55555544444 33 45566777
Q ss_pred HHcCCChHHHHHHHHHHH
Q 047571 590 YGYNDLCQEALSLFDKMR 607 (681)
Q Consensus 590 ~~~~~~~~~a~~~~~~m~ 607 (681)
+...|+....--+.+.|.
T Consensus 262 lG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 262 VGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHcCCcchHHHHHHHhc
Confidence 777777665555555443
No 440
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.41 E-value=31 Score=27.88 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=26.2
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 047571 81 RFARQNKLKEALVILDYMDQQGIPVNVTTFNALITAC 117 (681)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 117 (681)
.+...|.-.+|..+|..|++.|-+|| .++.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44556777889999999999998775 466666543
No 441
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.97 E-value=3.8e+02 Score=24.69 Aligned_cols=58 Identities=7% Similarity=0.040 Sum_probs=34.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc-ccchHHHHHHHHHHHH
Q 047571 485 MIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ-LKALKLGKEIHGQVLK 542 (681)
Q Consensus 485 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~ 542 (681)
++....+.|+++++...++++...+...+..--+.+-.+|-. .|....+++++..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 445566677788888888887777666666555555555532 3555555666555544
No 442
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.87 E-value=3e+02 Score=25.56 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047571 584 TAIIEAYGYNDLCQEALSLFDKMRN----GGFT-PNHFTFKVLLSICNQAGFADEACRIFNVM 641 (681)
Q Consensus 584 ~~l~~~~~~~~~~~~a~~~~~~m~~----~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (681)
-.+...|...|++++|+++|+.+.. .|.. +...+...+..++.+.|+.+..+.+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3466778888888888888888742 2322 24556667777788888888877765444
No 443
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=33.75 E-value=6.3e+02 Score=27.15 Aligned_cols=71 Identities=7% Similarity=-0.106 Sum_probs=27.2
Q ss_pred HHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 047571 368 RVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAV 440 (681)
Q Consensus 368 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 440 (681)
.++.+..-.+...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|...+..+.+.|+...+..+-..+.
T Consensus 395 ~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 395 ELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333333333444455566667777777777666666544321 23345555666666666655555444443
No 444
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=33.09 E-value=73 Score=22.96 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=29.1
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 047571 592 YNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAG 629 (681)
Q Consensus 592 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 629 (681)
-.++.+.+.+++++..+.|.+|.......+..+..+.|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 47888999999999998888887777776766665555
No 445
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=33.08 E-value=1e+02 Score=17.83 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHH
Q 047571 596 CQEALSLFDKMRNGGFTPNHFTFK 619 (681)
Q Consensus 596 ~~~a~~~~~~m~~~g~~p~~~~~~ 619 (681)
++.|..+|++.+. +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4566666666665 346555553
No 446
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.92 E-value=4.7e+02 Score=25.47 Aligned_cols=61 Identities=8% Similarity=0.038 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047571 89 KEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKM 151 (681)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (681)
+.-+.++++.++.+ +-+.......+..+.+..+.+...+-++.+.... +.+...|...+..
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHH
Confidence 34455666655553 3455555666666666666666666666666553 3344444444443
No 447
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=32.61 E-value=2e+02 Score=21.02 Aligned_cols=6 Identities=33% Similarity=0.750 Sum_probs=2.2
Q ss_pred HHHhCC
Q 047571 236 LIKNGF 241 (681)
Q Consensus 236 ~~~~g~ 241 (681)
+.+.|.
T Consensus 78 Ll~~g~ 83 (89)
T PF12796_consen 78 LLEHGA 83 (89)
T ss_dssp HHHTTT
T ss_pred HHHcCC
Confidence 333333
No 448
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=32.56 E-value=7.3e+02 Score=28.26 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=14.4
Q ss_pred HHHHHHHhcCChHHHHHHHhccCC
Q 047571 250 SLIDMYFKCGKIKLARRVFDETGD 273 (681)
Q Consensus 250 ~li~~~~~~~~~~~a~~~~~~~~~ 273 (681)
..+...+..|+.+-+..+++.-..
T Consensus 624 ~~L~~Aa~~g~~~~v~~Ll~~Gad 647 (823)
T PLN03192 624 DLLCTAAKRNDLTAMKELLKQGLN 647 (823)
T ss_pred hHHHHHHHhCCHHHHHHHHHCCCC
Confidence 345555667777766666665433
No 449
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.54 E-value=4.8e+02 Score=25.43 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=17.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 654 YLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 654 ~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
+..+...+..+|..+.|..+++-+.
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALL 181 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHH
Confidence 4444555667888888888877543
No 450
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.49 E-value=2.8e+02 Score=24.26 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=10.8
Q ss_pred HhhccCChhHHHHHHHHHHH
Q 047571 422 VCSQLKALNHGKEIHAYAVK 441 (681)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~ 441 (681)
.|.+.|.+++|.++++....
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555444
No 451
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.83 E-value=6.3e+02 Score=26.56 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=34.6
Q ss_pred hHHHHHHHhcCChHHHHHHHhccCCC--Chh---hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047571 249 TSLIDMYFKCGKIKLARRVFDETGDR--DIV---VWGSMIAGFAHNRLRWEALDCARWMIR 304 (681)
Q Consensus 249 ~~li~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~ 304 (681)
..++.-|.+.+++++|..++..|.-. ... +.+.+.+.+.+..--++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35778899999999999999888643 122 333444445555444444555555444
No 452
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=31.70 E-value=8.1e+02 Score=27.80 Aligned_cols=184 Identities=9% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCcchHHHHHHHHHhc-----------CChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHH
Q 047571 465 DYSLKLFDEMEVRNVISWTAMIDSCIEN-----------GRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLG 533 (681)
Q Consensus 465 ~~a~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 533 (681)
+++.++++.+...-+.-...+..-+.+. .++++.++.-+..++ ..|...+...+.. +......|
T Consensus 1092 e~~~k~~~~l~s~ypd~lpll~~~l~kl~~~sD~~kE~~~ki~eIl~~A~~Vi~---~~D~eaL~~y~~~--k~D~r~da 1166 (1304)
T KOG1114|consen 1092 EEAEKIYNYLKSSYPDYLPLLEVRLAKLMQKSDAVKETNKKIEEILSAADSVIQ---EIDTEALARYYAL--KEDTRPDA 1166 (1304)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH---hhcHHHHHHHHhc--ccCCcchH
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 047571 534 KEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP 613 (681)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 613 (681)
..+-.+|.+.. +.++.++.+.|..-.-.+.++...+.|.. -.....+.-.+.|.++..=--.-
T Consensus 1167 ~klk~~me~qk--------~tli~AL~kKg~a~ak~e~l~g~~e~dae---------ee~s~ld~~~e~y~el~kw~d~~ 1229 (1304)
T KOG1114|consen 1167 VKLKKKMEKQK--------DTLIDALVKKGEAFAKYEALKGHKEQDAE---------EELSKLDSYNENYQELLKWLDAS 1229 (1304)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHhhhHHhhhhhhcccccccch---------hhhhhhhhHHHHHHHHHHHhhcC
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHH
Q 047571 614 NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEA 670 (681)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 670 (681)
|..++..-.+-....|++.++.+++.++.+..+-.++...|..+++.+...|.-..|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~ 1286 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLA 1286 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhH
No 453
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.45 E-value=2e+02 Score=24.85 Aligned_cols=59 Identities=8% Similarity=0.032 Sum_probs=28.9
Q ss_pred HHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 047571 405 QQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVL 464 (681)
Q Consensus 405 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (681)
+..|++++..-. .++..+...++.-.|.++++.+.+.+...+..|.-..+..+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344554444332 23333333344555666666666655555555544445555555543
No 454
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.38 E-value=2.5e+02 Score=24.67 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=7.1
Q ss_pred hcCChHHHHHHHhcc
Q 047571 257 KCGKIKLARRVFDET 271 (681)
Q Consensus 257 ~~~~~~~a~~~~~~~ 271 (681)
+.|+++.|.++++-|
T Consensus 133 ~~~~~~~Ae~~~~~M 147 (204)
T COG2178 133 RKGSFEEAERFLKFM 147 (204)
T ss_pred HhccHHHHHHHHHHH
Confidence 344555555444443
No 455
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=31.29 E-value=3.7e+02 Score=23.70 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=37.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhc-------------CCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 620 VLLSICNQAGFADEACRIFNVMSRG-------------YKIEALEEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
+++-.|-+.-+|.++.++++.|.+- -+..+.-...+.-...+.++|.+|.|..++.+
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4555666777777777777776441 02233344566667778888888888887764
No 456
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=30.93 E-value=1.8e+02 Score=19.97 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=28.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH-----hcCChhHHHHH
Q 047571 80 QRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACV-----RTRSLVEGRLI 129 (681)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~ 129 (681)
..+...|++-+|-++++.+-.....+....+..+|+... +.|+...|..+
T Consensus 7 ~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 7 IELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345567888888888888865433345555666665533 34555544443
No 457
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=30.92 E-value=3.7e+02 Score=23.67 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047571 383 ALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG 462 (681)
Q Consensus 383 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (681)
+++-.|.+.-+|.+..++++.|.+..+. |. .+.++... .+..+.-...|.-...+.+.|
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~-----ft-~LKGL~g~---------------e~~asrCqivn~AaEiFL~sg 195 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIH-----FT-SLKGLTGP---------------EKLASRCQIVNIAAEIFLKSG 195 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hh-hccCccCc---------------cccCchhhhHHHHHHHHHHcC
Confidence 3445566666677777777776654322 11 11111111 112344556677777888888
Q ss_pred ChHHHHHHHhhC
Q 047571 463 VLDYSLKLFDEM 474 (681)
Q Consensus 463 ~~~~a~~~~~~~ 474 (681)
.+|.|..++++-
T Consensus 196 sidGA~~vLres 207 (233)
T PF14669_consen 196 SIDGALWVLRES 207 (233)
T ss_pred CchHHHHHHhcc
Confidence 888888888754
No 458
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.80 E-value=1.2e+03 Score=29.71 Aligned_cols=160 Identities=17% Similarity=0.151 Sum_probs=95.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCC--CCchhHHHHHHHHhhcCCChhHHHHhhhh-cCCCCCccHHHHHHHHHHcCC
Q 047571 112 ALITACVRTRSLVEGRLIHTHIRINGL--ENNGFLRTKLVKMYTSCGSFEDAEKVFDE-SSSESVYPWNALLRGAVIAGK 188 (681)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~ll~~~~~~~~ 188 (681)
.+..+-.+++.+.+|...++.-..... ......|-.+...|+.-+++|....+... ...++. ..-|.-....|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g- 1463 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASG- 1463 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhc-
Confidence 444556677888888888887411111 22334455555689999998888777662 222222 22334445566
Q ss_pred cChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHH-hHHHHHHHhcCChHHHHH
Q 047571 189 KRYRGVLFNYMKMRELGVQLN-VYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILR-TSLIDMYFKCGKIKLARR 266 (681)
Q Consensus 189 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~ 266 (681)
+++.|...|+.+.+.+ |+ ..+++-+++.....|.+..+.-..+-..... .+....+ +.=+.+--+.++++....
T Consensus 1464 -~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1464 -NWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred -cHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 9999999999988764 55 6678888887777777777666444333221 2222222 222334456777777766
Q ss_pred HHhccCCCChhhHHHH
Q 047571 267 VFDETGDRDIVVWGSM 282 (681)
Q Consensus 267 ~~~~~~~~~~~~~~~l 282 (681)
... ..+...|.+.
T Consensus 1540 ~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1540 YLS---DRNIEYWSVE 1552 (2382)
T ss_pred hhh---cccccchhHH
Confidence 655 4445555544
No 459
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.79 E-value=2e+02 Score=27.69 Aligned_cols=83 Identities=12% Similarity=-0.070 Sum_probs=38.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC-----CC--hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHh
Q 047571 555 NIKMYGMCGFLECAKLVFDAVPV-----KG--SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICN 626 (681)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~~~~-----~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 626 (681)
=..-|.+..++..|...|.+... |+ .+.|+.-..+....|++..|+.=-..... +.| ....|-.=..++.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhHHHH
Confidence 34445555555555555544333 22 33444444444445555555555555444 234 2233333333444
Q ss_pred ccCCHHHHHHHHH
Q 047571 627 QAGFADEACRIFN 639 (681)
Q Consensus 627 ~~g~~~~A~~~~~ 639 (681)
...++++|....+
T Consensus 165 eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 165 ELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHh
Confidence 4445555555444
No 460
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.66 E-value=2.3e+02 Score=21.07 Aligned_cols=41 Identities=7% Similarity=-0.098 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhcc
Q 047571 231 KTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDET 271 (681)
Q Consensus 231 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 271 (681)
++|+.....|+..|..+|..+++.+.-+=..+....+++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66777777777777777777776655444455555555543
No 461
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=30.21 E-value=4.2e+02 Score=23.98 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=14.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCC
Q 047571 587 IEAYGYNDLCQEALSLFDKMRNGG 610 (681)
Q Consensus 587 ~~~~~~~~~~~~a~~~~~~m~~~g 610 (681)
.....+.|+.++|.+.|.++...+
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344455677777777777766643
No 462
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=29.85 E-value=1.2e+02 Score=17.99 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=14.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH
Q 047571 654 YLIMIDILTRFGRIEEAHRFRE 675 (681)
Q Consensus 654 ~~~l~~~~~~~g~~~~A~~~~~ 675 (681)
+..+.-.+...|+.++|+++++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4455666777888888888844
No 463
>PLN02673 quinolinate synthetase A
Probab=29.77 E-value=1.6e+02 Score=31.60 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=21.4
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 047571 69 EKNPRAIYKDIQRFARQNKLKEALVILDYM 98 (681)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 98 (681)
.+-|.....+++.+....+|++=++.+-++
T Consensus 79 e~lP~kl~eIveeF~~l~dWEeRYr~LIeL 108 (724)
T PLN02673 79 ELVPCKLQRLIKEFKSLTEPVDRVKRLLHY 108 (724)
T ss_pred ccCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 445667888999999999886655544444
No 464
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=29.47 E-value=1.8e+02 Score=30.41 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=25.7
Q ss_pred HHHHHHHHh-cCChhHHHHHHHHHHHhCCCCc-hhHHHHHHHHhhcCCChhHHHHhhh
Q 047571 111 NALITACVR-TRSLVEGRLIHTHIRINGLENN-GFLRTKLVKMYTSCGSFEDAEKVFD 166 (681)
Q Consensus 111 ~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 166 (681)
..+...|-+ .|+..+|...+....-...+-. ....-++...+-+.|...+|--++.
T Consensus 216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILh 273 (886)
T KOG4507|consen 216 HNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILH 273 (886)
T ss_pred HHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheee
Confidence 344444433 5666666666555443321111 1223344445555666555555443
No 465
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.35 E-value=2.2e+02 Score=21.05 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=22.1
Q ss_pred cCChHHHHHHHhccCCCChhhHHHHHHHHHhcCCh
Q 047571 258 CGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLR 292 (681)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 292 (681)
..+.+++.++++.++.++..+|..+..++-..|..
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 34466667777766666666666666666555543
No 466
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.18 E-value=4.4e+02 Score=28.26 Aligned_cols=72 Identities=7% Similarity=0.168 Sum_probs=44.7
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChH------HHHHHHhhCCC-CCcchHHHHHHH
Q 047571 418 TVIPVCSQLKALNHGKEIHAYAVKNQ--FLPNVSIITSLMIMYSKCGVLD------YSLKLFDEMEV-RNVISWTAMIDS 488 (681)
Q Consensus 418 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~-~~~~~~~~li~~ 488 (681)
+++.+|...|++-.+.++++.....+ -+.-...||..++.+.+.|.++ .|.+.+++..- -|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 67788888888888888888777532 2333456677777777777643 34444444432 355566666554
Q ss_pred H
Q 047571 489 C 489 (681)
Q Consensus 489 ~ 489 (681)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 467
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=28.86 E-value=1.8e+02 Score=22.75 Aligned_cols=36 Identities=17% Similarity=0.045 Sum_probs=21.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 047571 113 LITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLV 149 (681)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 149 (681)
++.-+.++...++|+++.+.|.+.| ..+...-+.|-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr 102 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELR 102 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4555566666777777777777776 44444444433
No 468
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.84 E-value=3.2e+02 Score=22.84 Aligned_cols=60 Identities=10% Similarity=0.115 Sum_probs=35.9
Q ss_pred HhhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571 98 MDQQGIPVNVTTFNALITACVRT-RSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF 158 (681)
Q Consensus 98 ~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (681)
+.+.|.+++.. -..++..+... +..-.|.++++.+.+.+...+..|-..-+..+...|-+
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44556554433 34445555543 45667788888887777666666655566666665543
No 469
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.76 E-value=1.6e+02 Score=28.12 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=23.6
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCC-CCC-C----HHHHHHHHHHHhccCCHHHHHHHHH
Q 047571 586 IIEAYGYNDLCQEALSLFDKMRNGG-FTP-N----HFTFKVLLSICNQAGFADEACRIFN 639 (681)
Q Consensus 586 l~~~~~~~~~~~~a~~~~~~m~~~g-~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (681)
|...|-+.++|..|...+......+ ... | ..++--+.+.|.+.|+..+|..+..
T Consensus 109 LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~in 168 (399)
T KOG1497|consen 109 LASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYIN 168 (399)
T ss_pred HHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444455555555555544433222 111 1 1233344445555555555555544
No 470
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.76 E-value=2.2e+02 Score=24.56 Aligned_cols=48 Identities=8% Similarity=-0.093 Sum_probs=31.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhc
Q 047571 281 SMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARK 328 (681)
Q Consensus 281 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 328 (681)
.++..+...++.-.|.++++.+.+.+...+..|.-..|..+...|-..
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344444445556667777777888777777777666666666665443
No 471
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=28.37 E-value=1.9e+02 Score=21.14 Aligned_cols=14 Identities=0% Similarity=-0.080 Sum_probs=6.7
Q ss_pred HhcCCHHHHHHHHh
Q 047571 358 CKCRDMNSAWRVFY 371 (681)
Q Consensus 358 ~~~~~~~~a~~~~~ 371 (681)
++.|+++-...+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34455554444444
No 472
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.37 E-value=3.5e+02 Score=24.55 Aligned_cols=14 Identities=29% Similarity=0.214 Sum_probs=6.5
Q ss_pred HhcCChHHHHHHHH
Q 047571 287 AHNRLRWEALDCAR 300 (681)
Q Consensus 287 ~~~~~~~~a~~~~~ 300 (681)
.+.|..++|+++.+
T Consensus 114 iR~~~~eeal~F~q 127 (228)
T KOG2659|consen 114 IREGKTEEALEFAQ 127 (228)
T ss_pred HHhhhHHHHHHHHH
Confidence 34444455554443
No 473
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=28.24 E-value=1.1e+02 Score=16.66 Aligned_cols=13 Identities=8% Similarity=0.325 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHh
Q 047571 596 CQEALSLFDKMRN 608 (681)
Q Consensus 596 ~~~a~~~~~~m~~ 608 (681)
.+.|..+|+++..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 474
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.07 E-value=4.3e+02 Score=25.85 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN 626 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 626 (681)
.-|-+++......|.++..+.+|++.+..|..|-...-..+++.+-
T Consensus 141 KYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 141 KYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3688888888889999999999999999998886666666666654
No 475
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.92 E-value=1.4e+02 Score=20.77 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=26.2
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 047571 578 KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ 627 (681)
Q Consensus 578 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 627 (681)
+..+.++.++..++.-.-.++++..+.++...|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444556666666665566666666666666662 444444444444433
No 476
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.84 E-value=4.9e+02 Score=24.01 Aligned_cols=115 Identities=10% Similarity=-0.136 Sum_probs=54.2
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhh-HHHHHHHHHcCCChHH
Q 047571 523 VSGQLKALKLGKEIHGQVLKKDFASVP-FVAAENIKMYGMCGFLECAKLVFDAVPV--KGSIT-WTAIIEAYGYNDLCQE 598 (681)
Q Consensus 523 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~ 598 (681)
.|-....++.|...+.+.+.. .|++ ..|..-+..+.+..+++.+..--.+..+ ||.+- .--+.........+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 344555666777666555543 4444 3334445555556666655554444444 33222 1223333344555666
Q ss_pred HHHHHHHHHh----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 047571 599 ALSLFDKMRN----GGFTPNHFTFKVLLSICNQAGFADEACRIFN 639 (681)
Q Consensus 599 a~~~~~~m~~----~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (681)
|+..+.+..+ +.+++-......|..+--+.=...+..++++
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 6666665532 2233333444444444333333444444444
No 477
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.75 E-value=1.9e+02 Score=20.08 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=32.8
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 047571 71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVR 119 (681)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 119 (681)
....++.++...++..-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 344567777777777778888888888877773 456666666666554
No 478
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.63 E-value=3.6e+02 Score=22.48 Aligned_cols=60 Identities=5% Similarity=0.166 Sum_probs=35.6
Q ss_pred HHHHcCcCCCHHHHHHHHHHhhcc-CChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 047571 403 WMQQEGFRPDVVTVATVIPVCSQL-KALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV 463 (681)
Q Consensus 403 ~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (681)
.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 45566666555433 334444433 4566788888888877766666655555566665554
No 479
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.61 E-value=3.9e+02 Score=28.56 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCCChh
Q 047571 112 ALITACVRTRSLVEGRLIHTHIRING--LENNGFLRTKLVKMYTSCGSFE 159 (681)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 159 (681)
+++.+|..+|++-.+.++++.+.... -..-...+|..++...+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 77888888888888888888777543 2223345666677777777643
No 480
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=27.18 E-value=5.5e+02 Score=24.39 Aligned_cols=179 Identities=11% Similarity=-0.034 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHhHhCCCC-CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHH
Q 047571 492 NGRLDDALGVFRSMQLSKHR-PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM----CGFLE 566 (681)
Q Consensus 492 ~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 566 (681)
.+++..+...+......+.. -....-......-....+...|..++....+.| .+.....|..+|.. ..+..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHH
Q ss_pred HHHHHhhhCCCCChhhH---HHHHHHHHcCC--------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCCH
Q 047571 567 CAKLVFDAVPVKGSITW---TAIIEAYGYND--------LCQEALSLFDKMRNGGFTPNHFTFKVLLSIC----NQAGFA 631 (681)
Q Consensus 567 ~a~~~~~~~~~~~~~~~---~~l~~~~~~~~--------~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~----~~~g~~ 631 (681)
+|...++++-..+...- ...+..+...| +...|...|.++...| +......|...| .-..+.
T Consensus 131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCH
Q ss_pred HHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcC---------------CHHHHHHHHHhccCCC
Q 047571 632 DEACRIFNVMSRGYKIEALEEHYLIMIDILTRFG---------------RIEEAHRFREMSSSLS 681 (681)
Q Consensus 632 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~ 681 (681)
++|..+|....+. |. ......+. .+...| +...|..++.......
T Consensus 208 ~~A~~wy~~Aa~~-g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 208 KKAFRWYKKAAEQ-GD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHHHHHHHHHHHC-CC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
No 481
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.14 E-value=2.3e+02 Score=25.21 Aligned_cols=63 Identities=8% Similarity=0.005 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFT-FKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
....+.++..|...||++.|-++|--+.... +.|... |..=+..+.+.+......+.++.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 3456778888888899999999888888753 345543 44444455555554444455555544
No 482
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.38 E-value=1.6e+02 Score=23.20 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=34.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH
Q 047571 586 IIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFAD 632 (681)
Q Consensus 586 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 632 (681)
++..+...+..-.|.++++++.+.+...+..|....++.+.+.|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44555555666778888999988876678888777778888887544
No 483
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.25 E-value=1.9e+02 Score=22.54 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=14.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC
Q 047571 453 SLMIMYSKCGVLDYSLKLFDEMEVR 477 (681)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~~ 477 (681)
.++..|...|+.++|...+.++..|
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCC
Confidence 3445555566666666666666544
No 484
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.14 E-value=5.7e+02 Score=24.21 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhh
Q 047571 352 SLVDMYCKCRDMNSAWRVFYE 372 (681)
Q Consensus 352 ~l~~~~~~~~~~~~a~~~~~~ 372 (681)
.++..+.+.|.+.+|+.++..
T Consensus 130 Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHH
Confidence 466777777777777765533
No 485
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=26.00 E-value=8.2e+02 Score=27.85 Aligned_cols=22 Identities=0% Similarity=0.028 Sum_probs=13.2
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC
Q 047571 354 VDMYCKCRDMNSAWRVFYETEE 375 (681)
Q Consensus 354 ~~~~~~~~~~~~a~~~~~~~~~ 375 (681)
+...+..|+.+-+.-+++.-.+
T Consensus 659 Lh~A~~~g~~~iv~~Ll~~GAd 680 (823)
T PLN03192 659 LQVAMAEDHVDMVRLLIMNGAD 680 (823)
T ss_pred HHHHHHCCcHHHHHHHHHcCCC
Confidence 3444566777777766665443
No 486
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=25.97 E-value=2.9e+02 Score=20.73 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=31.9
Q ss_pred CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcC
Q 047571 67 LHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPV-NVTTFNALITACVRTR 121 (681)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ 121 (681)
..|.+..+-..+...+...|++++|++.+-.+.+..... +...-..++..+...|
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 345566677777888888888888888887776654222 3333444444444444
No 487
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=25.56 E-value=1.8e+03 Score=29.87 Aligned_cols=92 Identities=10% Similarity=0.094 Sum_probs=43.9
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhCCC---CChhHHHHHHHHHHhcC-ChHHHHHHHhhCCC---------CCcchH-
Q 047571 417 ATVIPVCSQLKALNHGKEIHAYAVKNQFL---PNVSIITSLMIMYSKCG-VLDYSLKLFDEMEV---------RNVISW- 482 (681)
Q Consensus 417 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---------~~~~~~- 482 (681)
..++.+..+..++..-.+.+......-.+ +...+|..+...+.... ...+.++..++..+ |+.+++
T Consensus 2555 ~llle~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~ 2634 (3550)
T KOG0889|consen 2555 ELLLECAWRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHG 2634 (3550)
T ss_pred eeeeehhccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchh
Confidence 34445555555665555555544432211 23344544444443322 23333333333321 444433
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHhHhC
Q 047571 483 -TAMIDSCIENGRLDDALGVFRSMQLS 508 (681)
Q Consensus 483 -~~li~~~~~~~~~~~A~~~~~~m~~~ 508 (681)
..++.++..--...+|..++..+.+-
T Consensus 2635 h~~lL~~~QqivEl~Ea~~I~s~l~~~ 2661 (3550)
T KOG0889|consen 2635 HVPLLQAFQQIVELQEAAQIYSDLNDG 2661 (3550)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34566666666666777776666543
No 488
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=25.44 E-value=9.1e+02 Score=28.49 Aligned_cols=150 Identities=12% Similarity=-0.015 Sum_probs=96.2
Q ss_pred hccccchHHHHH------HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC----------C-ChhhHHHH
Q 047571 524 SGQLKALKLGKE------IHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV----------K-GSITWTAI 586 (681)
Q Consensus 524 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~l 586 (681)
+...|.+.++.+ ++......-.+.....|..+...+-+.|+.++|...-.+..- + +...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344455555555 555444433455688889999999999999999888654332 1 13456666
Q ss_pred HHHHHcCCChHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc----CCC--CCChhH
Q 047571 587 IEAYGYNDLCQEALSLFDKMRNG-----G-FTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRG----YKI--EALEEH 653 (681)
Q Consensus 587 ~~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~~ 653 (681)
.-.+...++...|+..+.+.... | ..| ...++..+-..+...++.+.|+++++.+... .+. -.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 65566667888888877776532 2 134 3444555544455668889999998877542 121 223567
Q ss_pred HHHHHHHHhhcCCHHHHHHH
Q 047571 654 YLIMIDILTRFGRIEEAHRF 673 (681)
Q Consensus 654 ~~~l~~~~~~~g~~~~A~~~ 673 (681)
+..+.+.....|++..|.+.
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 78888888888887776654
No 489
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.21 E-value=3e+02 Score=30.52 Aligned_cols=110 Identities=11% Similarity=-0.017 Sum_probs=54.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 047571 548 VPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ 627 (681)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 627 (681)
++.+|..|.......|+.+-|+..|++.+. |+.|--.|.-.|+.++-.++.+-... +.|..+ ......-
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn-----fekLsfLYliTgn~eKL~Km~~iae~---r~D~~~---~~qnalY 739 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTKN-----FEKLSFLYLITGNLEKLSKMMKIAEI---RNDATG---QFQNALY 739 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhhh-----hhheeEEEEEeCCHHHHHHHHHHHHh---hhhhHH---HHHHHHH
Confidence 345555555555555555555555554442 33333334445555554444333322 222222 1112234
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 628 AGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 628 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
.|+.++=..+++.. |..| -.|. .-...|.-++|.++.++..
T Consensus 740 l~dv~ervkIl~n~----g~~~--layl----ta~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 740 LGDVKERVKILENG----GQLP--LAYL----TAAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred hccHHHHHHHHHhc----Cccc--HHHH----HHhhcCcHHHHHHHHHhhc
Confidence 56777777766632 4444 1122 2234788888888887654
No 490
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=25.19 E-value=8.7e+02 Score=26.07 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=13.7
Q ss_pred hHHHHHHHhhccCchhhhHHHHH
Q 047571 212 TFSCVIKSFAGASALMQGLKTHA 234 (681)
Q Consensus 212 ~~~~ll~~~~~~~~~~~a~~~~~ 234 (681)
.|=..+..+.-.|.++.|.+++.
T Consensus 150 ~FW~~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 150 DFWDYVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH-
T ss_pred hHHHHHHHHHHcCCHHHHHHHHH
Confidence 33336666677777777777763
No 491
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=25.07 E-value=2.5e+02 Score=22.63 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=8.3
Q ss_pred HHHHHHHhccCCHHHHHH
Q 047571 619 KVLLSICNQAGFADEACR 636 (681)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~ 636 (681)
..++....+.|-.++...
T Consensus 63 r~~~r~A~~~glI~d~e~ 80 (124)
T PF08780_consen 63 RDVFREAFKAGLIDDGEI 80 (124)
T ss_dssp HHHHHHHHHTTSSSHHHH
T ss_pred HHHHHHHHHcCCCCCHHH
Confidence 444444455555444333
No 492
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.71 E-value=8.6e+02 Score=25.80 Aligned_cols=119 Identities=8% Similarity=0.023 Sum_probs=76.6
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHHHH-------hhCCC------------CC-ChhhHHHH---HHHHHhcCChhH
Q 047571 69 EKNPRAIYKDIQRFARQNKLKEALVILDYM-------DQQGI------------PV-NVTTFNAL---ITACVRTRSLVE 125 (681)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~------------~~-~~~~~~~l---l~~~~~~~~~~~ 125 (681)
|-...++-.+...+..+|+.+-|-++.++. ....+ .| +..-|.++ ++.+.+.|-+..
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 444556677778888999987766655553 22221 12 22333333 344567899999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhh-cCCChhHHHHhhhhcCC------CCCccHHHHHHHHHHcC
Q 047571 126 GRLIHTHIRINGLENNGFLRTKLVKMYT-SCGSFEDAEKVFDESSS------ESVYPWNALLRGAVIAG 187 (681)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~ 187 (681)
|.++-+.+.+....-|+.....+|..|+ ++.++.-.++++++... -....|+..+.-+...+
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 9999999988886668888888888887 56777778888776532 23334665554443333
No 493
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=24.38 E-value=6.2e+02 Score=24.69 Aligned_cols=62 Identities=8% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-------CCcchHHH--HHHHHHhcCChhHHHHHHHHhHh-----CCCCCCHH
Q 047571 454 LMIMYSKCGVLDYSLKLFDEMEV-------RNVISWTA--MIDSCIENGRLDDALGVFRSMQL-----SKHRPDSV 515 (681)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~--li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~ 515 (681)
++...-+.++.++|.++++++.+ |+.+.|.. +...+...|+..++.+++++.++ -|++|+..
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 34444455677777777776652 55554433 34445566777777777776665 45555444
No 494
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=23.98 E-value=8.3e+02 Score=25.38 Aligned_cols=79 Identities=10% Similarity=0.114 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhC-CCCchhHHHHHHHHhhcCCChhHHHHhhhhc
Q 047571 90 EALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRING-LENNGFLRTKLVKMYTSCGSFEDAEKVFDES 168 (681)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 168 (681)
....+|+....+ ++.|+..|..-+.-|-+.+.+.+...+|.+|.... -.|+.++|.+. .-|-....++.|..+|..-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHH
Confidence 344555555444 34588889988988888888999999999998764 35555554432 2233344488888888765
Q ss_pred CC
Q 047571 169 SS 170 (681)
Q Consensus 169 ~~ 170 (681)
.+
T Consensus 167 LR 168 (568)
T KOG2396|consen 167 LR 168 (568)
T ss_pred hh
Confidence 53
No 495
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.84 E-value=8.4e+02 Score=25.42 Aligned_cols=124 Identities=12% Similarity=0.093 Sum_probs=65.0
Q ss_pred HcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHH
Q 047571 406 QEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAM 485 (681)
Q Consensus 406 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 485 (681)
..|+..+......++.. ..|+...+...++.+....- ...+ .+.+.+++.. ........+
T Consensus 191 ~egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~~~~--~~It-------------~e~V~~~l~~---~~~~~i~~l 250 (472)
T PRK14962 191 AEGIEIDREALSFIAKR--ASGGLRDALTMLEQVWKFSE--GKIT-------------LETVHEALGL---IPIEVVRDY 250 (472)
T ss_pred HcCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcC--CCCC-------------HHHHHHHHcC---CCHHHHHHH
Confidence 44666666655555543 24677777777666443210 0011 1122222211 111233334
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchH------HHHHHHHHHHHcCCCCChh
Q 047571 486 IDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALK------LGKEIHGQVLKKDFASVPF 550 (681)
Q Consensus 486 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~ 550 (681)
+.+ .+.++++.|+.++.+|...|..|....-..+..++...|..+ .+..+++...+-|++-...
T Consensus 251 i~s-i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~ 320 (472)
T PRK14962 251 INA-IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKR 320 (472)
T ss_pred HHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHH
Confidence 443 356899999999999999998887765555555554444322 3334444444445544433
No 496
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=23.65 E-value=8.1e+02 Score=25.15 Aligned_cols=172 Identities=15% Similarity=0.143 Sum_probs=91.7
Q ss_pred HhcCChhHHHHHHHHHhhC----C-CCCChhhHH--HHHHHHHhcCChhHHHHHHHHHHHhCCCCc--hhHHHHHHHHhh
Q 047571 83 ARQNKLKEALVILDYMDQQ----G-IPVNVTTFN--ALITACVRTRSLVEGRLIHTHIRINGLENN--GFLRTKLVKMYT 153 (681)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 153 (681)
++.|.++-...+++..... | +..|-.+.. .-+.+.+..|+++-+..+ .+.|...| ..|-+.=+.+-|
T Consensus 50 aRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L----~~~ga~VN~tT~TNStPLraAC 125 (615)
T KOG0508|consen 50 ARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLL----LRRGASVNDTTRTNSTPLRAAC 125 (615)
T ss_pred hhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHH----HHhcCccccccccCCccHHHHH
Confidence 3778888777777765321 1 111111111 115555667776555444 44444333 344434566667
Q ss_pred cCCChhHHHHhhhhcCCCCCcc---HHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhH--HHHHHHhhccCchhh
Q 047571 154 SCGSFEDAEKVFDESSSESVYP---WNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTF--SCVIKSFAGASALMQ 228 (681)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~ 228 (681)
--|+++-...+++.--.+++.- -..|+-++.+ | +.+ +-+.+.+.|..++..++ |+.+.-|+..|.++-
T Consensus 126 fDG~leivKyLvE~gad~~IanrhGhTcLmIa~yk-G--h~~----I~qyLle~gADvn~ks~kGNTALH~caEsG~vdi 198 (615)
T KOG0508|consen 126 FDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYK-G--HVD----IAQYLLEQGADVNAKSYKGNTALHDCAESGSVDI 198 (615)
T ss_pred hcchhHHHHHHHHcCCCCcccccCCCeeEEeeecc-C--chH----HHHHHHHhCCCcchhcccCchHHHhhhhcccHHH
Confidence 7799998888886544333221 2223322222 2 343 33445556888887776 788888998888765
Q ss_pred hHHHHHHHHHhCCCCCc--HHHhHHHHHHHhcCChHHHHHHHhc
Q 047571 229 GLKTHALLIKNGFVDYL--ILRTSLIDMYFKCGKIKLARRVFDE 270 (681)
Q Consensus 229 a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~ 270 (681)
... +.+.|...+. .-.+.|+ +....|..+....+++.
T Consensus 199 vq~----Ll~~ga~i~~d~~GmtPL~-~Aa~tG~~~iVe~L~~~ 237 (615)
T KOG0508|consen 199 VQL----LLKHGAKIDVDGHGMTPLL-LAAVTGHTDIVERLLQC 237 (615)
T ss_pred HHH----HHhCCceeeecCCCCchHH-HHhhhcchHHHHHHhcC
Confidence 544 4444433222 2222233 23456666666666653
No 497
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.56 E-value=7.9e+02 Score=27.62 Aligned_cols=131 Identities=9% Similarity=0.080 Sum_probs=80.6
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHH
Q 047571 457 MYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEI 536 (681)
Q Consensus 457 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 536 (681)
.+..+|+++.|.+.-..+. |..+|..|...-.++|+.+-|+..|++.+. |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 4456788888887766654 445788899988999999988888887754 33444456666777776666
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571 537 HGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 609 (681)
......++ |.. .......-.|+.++-..+++..-.-+. .|- .-..+|.-++|.++.++....
T Consensus 721 ~~iae~r~---D~~---~~~qnalYl~dv~ervkIl~n~g~~~l-ayl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 721 MKIAEIRN---DAT---GQFQNALYLGDVKERVKILENGGQLPL-AYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHhhh---hhH---HHHHHHHHhccHHHHHHHHHhcCcccH-HHH----HHhhcCcHHHHHHHHHhhccc
Confidence 55544321 111 111112224677777777765443211 121 123477788888888887763
No 498
>PRK10941 hypothetical protein; Provisional
Probab=23.32 E-value=6.4e+02 Score=23.83 Aligned_cols=52 Identities=8% Similarity=-0.049 Sum_probs=23.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhh
Q 047571 113 LITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVF 165 (681)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 165 (681)
+-.++.+.++++.|..+.+.+.... +.++.-+.-..-.|.+.|.+..|..=+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL 238 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDL 238 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3334444555555555555554443 333333333333444445544444433
No 499
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.12 E-value=2.6e+02 Score=20.35 Aligned_cols=25 Identities=20% Similarity=0.107 Sum_probs=15.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhC
Q 047571 113 LITACVRTRSLVEGRLIHTHIRING 137 (681)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~ 137 (681)
++..+.++...++|+++.+.|.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555556666666666666666
No 500
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=23.03 E-value=1.7e+02 Score=23.28 Aligned_cols=51 Identities=10% Similarity=0.064 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhH
Q 047571 110 FNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFED 160 (681)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (681)
-..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|-+..
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 356677777777788999999999998888888776667777777775443
Done!