Query 047571
Match_columns 681
No_of_seqs 655 out of 3109
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 21:54:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1E-38 3.5E-43 342.7 40.7 490 156-662 67-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4E-38 1.4E-42 338.1 41.2 478 70-626 82-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.4E-29 8.2E-34 257.0 18.6 221 90-334 8-233 (501)
4 4g26_A Pentatricopeptide repea 100.0 2.9E-28 1E-32 249.0 21.1 216 395-664 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 8.8E-24 3E-28 213.2 38.8 369 252-666 6-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.7E-23 5.7E-28 211.2 40.0 370 219-630 8-388 (388)
7 2gw1_A Mitochondrial precursor 99.9 6.8E-21 2.3E-25 200.1 38.1 424 212-644 8-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 8.1E-21 2.8E-25 199.5 33.9 426 72-507 6-477 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.1E-19 3.6E-24 192.1 33.1 419 177-644 29-491 (537)
10 3fp2_A TPR repeat-containing p 99.9 7.5E-19 2.6E-23 185.6 39.4 435 72-609 25-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 3.2E-19 1.1E-23 183.8 32.3 367 61-468 15-445 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 2.6E-19 8.9E-24 184.5 31.2 293 312-643 27-357 (450)
13 1xi4_A Clathrin heavy chain; a 99.8 2.6E-15 8.9E-20 162.4 52.0 535 69-672 982-1584(1630)
14 1xi4_A Clathrin heavy chain; a 99.8 4.1E-15 1.4E-19 160.9 52.4 221 359-608 1088-1308(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 1.7E-16 5.8E-21 157.9 32.6 309 347-662 3-351 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 2.7E-16 9.2E-21 156.4 30.4 295 378-679 3-334 (359)
17 3hym_B Cell division cycle pro 99.8 6.1E-16 2.1E-20 151.8 30.5 283 378-668 22-322 (330)
18 2xm6_A Protein corresponding t 99.8 5.6E-15 1.9E-19 153.3 38.4 379 244-677 38-468 (490)
19 1b89_A Protein (clathrin heavy 99.8 8.2E-17 2.8E-21 156.2 21.7 284 258-574 16-307 (449)
20 1fch_A Peroxisomal targeting s 99.7 4.1E-17 1.4E-21 163.1 19.3 297 357-676 35-355 (368)
21 1b89_A Protein (clathrin heavy 99.7 8.1E-16 2.8E-20 149.2 26.3 343 154-574 15-368 (449)
22 3hym_B Cell division cycle pro 99.7 7.4E-16 2.5E-20 151.2 26.6 287 342-632 17-322 (330)
23 2ooe_A Cleavage stimulation fa 99.7 2.6E-14 9E-19 149.9 37.2 411 209-644 12-492 (530)
24 2xm6_A Protein corresponding t 99.7 1E-13 3.4E-18 143.8 41.1 346 274-677 37-429 (490)
25 4eqf_A PEX5-related protein; a 99.7 4.3E-16 1.5E-20 155.4 20.9 264 378-677 65-353 (365)
26 2ooe_A Cleavage stimulation fa 99.7 5.3E-14 1.8E-18 147.6 34.7 414 242-677 10-489 (530)
27 3cv0_A Peroxisome targeting si 99.7 3E-15 1E-19 146.6 23.1 273 378-677 21-312 (327)
28 1fch_A Peroxisomal targeting s 99.7 1.9E-15 6.4E-20 150.9 21.5 301 320-640 34-355 (368)
29 3spa_A Mtrpol, DNA-directed RN 99.7 8.2E-17 2.8E-21 168.6 10.4 154 176-361 130-286 (1134)
30 3mkr_A Coatomer subunit epsilo 99.7 3.1E-15 1.1E-19 142.7 19.8 269 385-674 6-288 (291)
31 4eqf_A PEX5-related protein; a 99.7 3.7E-15 1.3E-19 148.5 20.5 272 345-640 63-352 (365)
32 3mkr_A Coatomer subunit epsilo 99.7 5.9E-14 2E-18 133.8 27.6 268 354-636 6-286 (291)
33 3spa_A Mtrpol, DNA-directed RN 99.7 9.5E-17 3.3E-21 168.1 7.9 128 343-470 123-258 (1134)
34 3cv0_A Peroxisome targeting si 99.6 1.3E-14 4.4E-19 142.2 21.5 275 346-642 20-313 (327)
35 4g1t_A Interferon-induced prot 99.6 4.5E-13 1.5E-17 138.6 23.7 371 245-679 51-458 (472)
36 4g1t_A Interferon-induced prot 99.5 1.9E-12 6.6E-17 133.8 28.0 80 564-643 315-400 (472)
37 2pl2_A Hypothetical conserved 99.5 4.1E-13 1.4E-17 122.1 19.0 192 446-678 3-212 (217)
38 3e4b_A ALGK; tetratricopeptide 99.5 6.6E-12 2.3E-16 128.0 29.7 376 216-643 9-420 (452)
39 3uq3_A Heat shock protein STI1 99.5 1.4E-12 4.7E-17 122.7 21.0 224 380-643 7-235 (258)
40 3u4t_A TPR repeat-containing p 99.5 3.5E-12 1.2E-16 121.0 23.1 225 452-678 7-248 (272)
41 3e4b_A ALGK; tetratricopeptide 99.5 3E-11 1E-15 123.1 29.6 385 78-542 9-420 (452)
42 3uq3_A Heat shock protein STI1 99.5 2.3E-12 8E-17 121.0 19.7 221 347-609 5-236 (258)
43 2pl2_A Hypothetical conserved 99.5 3.5E-12 1.2E-16 115.9 18.6 195 69-301 2-210 (217)
44 2ho1_A Type 4 fimbrial biogene 99.4 2E-11 6.9E-16 114.2 23.7 190 483-677 41-235 (252)
45 1xnf_A Lipoprotein NLPI; TPR, 99.4 5.7E-12 1.9E-16 119.7 20.2 243 391-674 18-269 (275)
46 1ouv_A Conserved hypothetical 99.4 2.9E-11 9.8E-16 114.7 24.7 220 412-643 5-250 (273)
47 4a1s_A PINS, partner of inscut 99.4 2E-12 6.8E-17 131.1 15.7 269 380-677 50-369 (411)
48 2ho1_A Type 4 fimbrial biogene 99.4 2E-11 6.8E-16 114.2 21.3 196 413-644 37-238 (252)
49 1ouv_A Conserved hypothetical 99.4 7.9E-11 2.7E-15 111.6 24.7 222 377-610 5-252 (273)
50 2h6f_A Protein farnesyltransfe 99.4 3.3E-11 1.1E-15 118.7 22.3 242 378-662 97-364 (382)
51 2vq2_A PILW, putative fimbrial 99.4 4.6E-11 1.6E-15 109.4 22.0 195 447-643 7-210 (225)
52 2q7f_A YRRB protein; TPR, prot 99.4 6.2E-12 2.1E-16 116.9 16.2 196 446-644 21-222 (243)
53 3sf4_A G-protein-signaling mod 99.4 7.2E-12 2.5E-16 126.6 17.8 291 377-668 8-364 (406)
54 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.9E-12 9.8E-17 121.8 13.8 242 360-638 18-269 (275)
55 2h6f_A Protein farnesyltransfe 99.4 1.5E-11 5.1E-16 121.2 19.0 221 451-677 100-344 (382)
56 3ro2_A PINS homolog, G-protein 99.4 4.9E-12 1.7E-16 124.1 15.7 269 381-678 8-330 (338)
57 2vq2_A PILW, putative fimbrial 99.4 4.5E-11 1.5E-15 109.5 21.1 194 480-677 9-208 (225)
58 3sf4_A G-protein-signaling mod 99.4 1.1E-11 3.7E-16 125.3 17.7 295 343-637 5-369 (406)
59 3u4t_A TPR repeat-containing p 99.4 6.7E-11 2.3E-15 112.1 21.9 250 351-628 7-268 (272)
60 2q7f_A YRRB protein; TPR, prot 99.4 7.9E-12 2.7E-16 116.2 14.9 192 414-608 24-221 (243)
61 4a1s_A PINS, partner of inscut 99.3 1.5E-11 5E-16 124.6 14.5 267 347-644 48-372 (411)
62 4e6h_A MRNA 3'-END-processing 99.3 2.9E-08 1E-12 104.5 39.3 227 396-628 327-587 (679)
63 3ro2_A PINS homolog, G-protein 99.3 5.9E-11 2E-15 116.3 16.3 265 349-644 7-332 (338)
64 2ond_A Cleavage stimulation fa 99.3 9.4E-10 3.2E-14 106.1 24.0 211 430-644 33-270 (308)
65 4e6h_A MRNA 3'-END-processing 99.3 7.7E-08 2.6E-12 101.3 40.2 64 105-169 64-130 (679)
66 4abn_A Tetratricopeptide repea 99.2 8E-11 2.7E-15 120.8 15.5 206 429-639 84-316 (474)
67 3ulq_A Response regulator aspa 99.2 4.5E-10 1.5E-14 112.3 20.5 220 454-677 109-365 (383)
68 3ulq_A Response regulator aspa 99.2 4.6E-09 1.6E-13 104.9 27.6 223 384-643 109-367 (383)
69 3vtx_A MAMA; tetratricopeptide 99.2 5.8E-10 2E-14 98.4 18.6 163 478-643 4-169 (184)
70 3vtx_A MAMA; tetratricopeptide 99.2 6.2E-10 2.1E-14 98.1 18.6 159 514-677 5-167 (184)
71 4abn_A Tetratricopeptide repea 99.2 1.6E-10 5.5E-15 118.5 16.7 188 480-674 103-315 (474)
72 2ond_A Cleavage stimulation fa 99.2 3.4E-09 1.2E-13 102.1 24.5 212 395-609 33-270 (308)
73 3nf1_A KLC 1, kinesin light ch 99.2 2.9E-10 9.9E-15 110.0 15.4 229 447-678 26-305 (311)
74 3nf1_A KLC 1, kinesin light ch 99.2 2E-10 6.9E-15 111.1 14.2 240 379-643 28-306 (311)
75 1hz4_A MALT regulatory protein 99.1 9.3E-09 3.2E-13 102.3 23.6 264 381-644 17-322 (373)
76 1hz4_A MALT regulatory protein 99.1 3.2E-08 1.1E-12 98.4 27.4 286 351-644 18-349 (373)
77 3q15_A PSP28, response regulat 99.1 2.4E-09 8.2E-14 106.7 17.6 192 482-677 144-362 (378)
78 3as5_A MAMA; tetratricopeptide 99.1 4.1E-09 1.4E-13 92.9 17.0 161 449-643 9-172 (186)
79 3as5_A MAMA; tetratricopeptide 99.1 2.7E-09 9.3E-14 94.0 15.4 162 481-678 10-171 (186)
80 1qqe_A Vesicular transport pro 99.1 7E-09 2.4E-13 98.9 19.2 162 516-680 79-269 (292)
81 3q15_A PSP28, response regulat 99.1 1.6E-08 5.4E-13 100.7 21.8 298 343-643 6-364 (378)
82 4gyw_A UDP-N-acetylglucosamine 99.0 3.6E-09 1.2E-13 112.9 16.6 159 479-641 9-171 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.0 4.9E-09 1.7E-13 111.8 16.3 160 447-608 8-173 (723)
84 4i17_A Hypothetical protein; T 99.0 2.6E-08 8.8E-13 91.2 17.8 188 447-644 6-209 (228)
85 3edt_B KLC 2, kinesin light ch 99.0 8.1E-09 2.8E-13 98.1 14.9 217 460-679 13-280 (283)
86 4i17_A Hypothetical protein; T 99.0 1.9E-08 6.3E-13 92.1 16.4 190 477-678 5-207 (228)
87 2fo7_A Synthetic consensus TPR 98.9 3.1E-08 1.1E-12 81.7 13.6 123 552-677 4-129 (136)
88 3edt_B KLC 2, kinesin light ch 98.9 7E-08 2.4E-12 91.5 17.1 159 85-269 14-193 (283)
89 3qky_A Outer membrane assembly 98.8 7.5E-08 2.6E-12 90.2 16.0 211 446-671 13-252 (261)
90 3qou_A Protein YBBN; thioredox 98.8 1.2E-07 4.1E-12 89.9 17.1 160 515-676 118-280 (287)
91 3mv2_B Coatomer subunit epsilo 98.8 2.9E-07 9.9E-12 85.7 18.9 176 498-678 85-280 (310)
92 2pzi_A Probable serine/threoni 98.8 5.5E-08 1.9E-12 104.4 16.1 182 490-678 402-603 (681)
93 2ifu_A Gamma-SNAP; membrane fu 98.8 1.3E-07 4.4E-12 90.9 15.7 199 391-642 4-222 (307)
94 2r5s_A Uncharacterized protein 98.8 1.1E-07 3.9E-12 82.7 13.7 149 526-677 18-170 (176)
95 1qqe_A Vesicular transport pro 98.8 3.2E-07 1.1E-11 87.4 17.9 210 362-608 32-268 (292)
96 3qky_A Outer membrane assembly 98.7 2.2E-07 7.4E-12 87.0 15.4 167 478-678 14-222 (261)
97 2fo7_A Synthetic consensus TPR 98.7 3.1E-07 1.1E-11 75.5 14.7 130 481-644 3-132 (136)
98 2yhc_A BAMD, UPF0169 lipoprote 98.7 3.2E-07 1.1E-11 83.5 15.9 184 480-678 5-211 (225)
99 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.3E-07 1.5E-11 81.9 16.2 123 554-677 11-147 (213)
100 3mv2_B Coatomer subunit epsilo 98.7 1.8E-06 6.1E-11 80.4 19.5 173 354-543 20-207 (310)
101 2uy1_A Cleavage stimulation fa 98.6 5.9E-05 2E-09 77.0 31.7 363 191-608 11-412 (493)
102 2uy1_A Cleavage stimulation fa 98.6 7.2E-06 2.5E-10 83.8 24.6 121 550-677 287-410 (493)
103 4ga2_A E3 SUMO-protein ligase 98.6 8.6E-08 2.9E-12 80.7 8.7 140 522-666 5-149 (150)
104 3urz_A Uncharacterized protein 98.6 5.1E-07 1.7E-11 80.9 14.0 132 520-657 60-196 (208)
105 3urz_A Uncharacterized protein 98.6 4.1E-07 1.4E-11 81.6 13.2 173 484-680 9-186 (208)
106 3rjv_A Putative SEL1 repeat pr 98.6 2.6E-06 9.1E-11 76.4 18.0 158 478-644 17-197 (212)
107 3rjv_A Putative SEL1 repeat pr 98.6 2.1E-06 7.1E-11 77.1 17.2 172 496-677 3-194 (212)
108 2pzi_A Probable serine/threoni 98.6 6.3E-07 2.1E-11 96.2 15.8 168 424-595 402-583 (681)
109 2vsy_A XCC0866; transferase, g 98.6 6E-07 2E-11 94.7 15.0 150 492-644 2-157 (568)
110 2ifu_A Gamma-SNAP; membrane fu 98.6 3.9E-07 1.3E-11 87.5 12.0 195 461-678 4-222 (307)
111 2r5s_A Uncharacterized protein 98.6 1.2E-06 4.1E-11 76.1 14.1 158 451-642 9-171 (176)
112 2yhc_A BAMD, UPF0169 lipoprote 98.5 3.3E-06 1.1E-10 76.7 17.3 180 448-644 4-213 (225)
113 1a17_A Serine/threonine protei 98.5 1.2E-06 4E-11 75.2 12.4 124 551-677 15-143 (166)
114 3gyz_A Chaperone protein IPGC; 98.5 4.9E-07 1.7E-11 75.6 9.3 92 551-643 38-132 (151)
115 2vsy_A XCC0866; transferase, g 98.5 1.8E-06 6.3E-11 90.9 16.1 158 461-621 2-168 (568)
116 3qou_A Protein YBBN; thioredox 98.5 4.9E-06 1.7E-10 78.8 17.2 163 104-270 114-280 (287)
117 3u3w_A Transcriptional activat 98.5 1.8E-05 6.3E-10 75.2 21.3 157 485-641 81-263 (293)
118 3dra_A Protein farnesyltransfe 98.5 3E-05 1E-09 73.0 22.1 216 392-643 47-286 (306)
119 4ga2_A E3 SUMO-protein ligase 98.5 3.5E-07 1.2E-11 76.9 8.0 119 555-677 3-126 (150)
120 4f3v_A ESX-1 secretion system 98.5 7.4E-06 2.5E-10 75.2 16.8 126 551-678 104-235 (282)
121 2qfc_A PLCR protein; TPR, HTH, 98.4 4.2E-06 1.4E-10 79.6 16.0 159 483-641 79-263 (293)
122 3gw4_A Uncharacterized protein 98.4 1.6E-06 5.3E-11 77.4 11.3 52 490-542 3-54 (203)
123 3gyz_A Chaperone protein IPGC; 98.4 2E-06 6.9E-11 71.9 10.1 106 61-168 25-130 (151)
124 4gco_A Protein STI-1; structur 98.4 4.5E-06 1.5E-10 67.5 11.9 106 550-659 14-123 (126)
125 2lni_A Stress-induced-phosphop 98.4 4.4E-06 1.5E-10 68.3 12.1 115 548-666 15-133 (133)
126 1na0_A Designed protein CTPR3; 98.4 5.6E-06 1.9E-10 66.7 12.4 114 549-665 9-125 (125)
127 3dra_A Protein farnesyltransfe 98.4 0.00044 1.5E-08 65.1 26.8 235 354-621 39-299 (306)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.2E-05 4.1E-10 72.2 15.7 124 481-609 8-150 (213)
129 4gco_A Protein STI-1; structur 98.3 5.6E-06 1.9E-10 66.9 12.1 95 580-678 13-108 (126)
130 3u3w_A Transcriptional activat 98.3 2.5E-05 8.6E-10 74.2 18.3 155 454-608 81-265 (293)
131 2vgx_A Chaperone SYCD; alterna 98.3 1.7E-06 5.7E-11 72.5 8.7 95 549-644 21-118 (148)
132 2qfc_A PLCR protein; TPR, HTH, 98.3 2E-05 6.9E-10 74.9 16.9 161 516-676 77-262 (293)
133 1p5q_A FKBP52, FK506-binding p 98.3 5.3E-06 1.8E-10 80.5 12.5 92 581-676 197-290 (336)
134 2vyi_A SGTA protein; chaperone 98.3 6.3E-06 2.2E-10 67.0 11.1 116 549-667 12-130 (131)
135 2e2e_A Formate-dependent nitri 98.3 7.9E-06 2.7E-10 70.9 11.7 117 526-644 22-144 (177)
136 4f3v_A ESX-1 secretion system 98.2 1.3E-05 4.5E-10 73.6 13.3 192 425-657 18-247 (282)
137 3gw4_A Uncharacterized protein 98.2 6.5E-06 2.2E-10 73.3 11.3 157 460-643 4-175 (203)
138 2c2l_A CHIP, carboxy terminus 98.2 2.6E-06 8.8E-11 80.4 8.9 94 413-507 4-100 (281)
139 2xcb_A PCRH, regulatory protei 98.2 1E-05 3.5E-10 67.1 11.4 95 549-644 18-115 (142)
140 1a17_A Serine/threonine protei 98.2 1.8E-05 6E-10 67.7 13.2 94 549-643 47-145 (166)
141 2vgx_A Chaperone SYCD; alterna 98.2 1.1E-05 3.6E-10 67.5 11.3 90 583-676 24-114 (148)
142 2c2l_A CHIP, carboxy terminus 98.2 1.3E-05 4.3E-10 75.6 13.0 95 447-542 3-100 (281)
143 4gcn_A Protein STI-1; structur 98.2 1.3E-05 4.3E-10 65.0 10.9 95 582-677 10-109 (127)
144 2kck_A TPR repeat; tetratricop 98.2 1.6E-05 5.6E-10 62.4 11.5 98 580-678 6-104 (112)
145 1na0_A Designed protein CTPR3; 98.2 1.9E-05 6.4E-10 63.5 11.9 96 580-678 9-104 (125)
146 2xcb_A PCRH, regulatory protei 98.2 1.2E-05 4.1E-10 66.7 10.8 106 61-168 7-112 (142)
147 2lni_A Stress-induced-phosphop 98.2 3.1E-05 1.1E-09 63.1 13.1 103 65-169 9-111 (133)
148 3sz7_A HSC70 cochaperone (SGT) 98.2 1.4E-05 4.9E-10 68.2 11.4 95 549-644 11-108 (164)
149 3upv_A Heat shock protein STI1 98.2 2.2E-05 7.4E-10 63.5 11.9 94 549-643 4-100 (126)
150 2e2e_A Formate-dependent nitri 98.1 2.5E-06 8.6E-11 74.1 6.2 115 560-678 21-142 (177)
151 3q7a_A Farnesyltransferase alp 98.1 0.00048 1.6E-08 65.5 21.8 244 382-643 58-330 (349)
152 1elw_A TPR1-domain of HOP; HOP 98.1 3.3E-05 1.1E-09 61.3 11.5 94 549-643 4-100 (118)
153 1elw_A TPR1-domain of HOP; HOP 98.1 5.2E-05 1.8E-09 60.0 12.3 93 582-677 6-98 (118)
154 3ro3_A PINS homolog, G-protein 98.1 1.5E-05 5.2E-10 67.7 9.6 127 551-677 11-155 (164)
155 4gcn_A Protein STI-1; structur 98.1 2.7E-05 9.1E-10 63.0 10.5 103 551-656 10-121 (127)
156 2kck_A TPR repeat; tetratricop 98.1 3.9E-05 1.3E-09 60.1 11.4 99 69-169 3-104 (112)
157 4b4t_Q 26S proteasome regulato 98.1 5.2E-05 1.8E-09 76.8 15.0 119 455-573 11-159 (434)
158 1hxi_A PEX5, peroxisome target 98.1 2.3E-05 7.7E-10 62.8 9.8 92 583-678 20-112 (121)
159 3upv_A Heat shock protein STI1 98.1 3.2E-05 1.1E-09 62.5 10.9 92 582-677 6-98 (126)
160 3q49_B STIP1 homology and U bo 98.1 4.8E-05 1.6E-09 62.5 12.2 116 547-663 7-128 (137)
161 1p5q_A FKBP52, FK506-binding p 98.1 3.9E-05 1.3E-09 74.3 13.3 143 478-642 146-292 (336)
162 3sz7_A HSC70 cochaperone (SGT) 98.1 4E-05 1.4E-09 65.4 11.9 95 580-678 11-106 (164)
163 3q7a_A Farnesyltransferase alp 98.0 0.0046 1.6E-07 58.8 26.7 251 355-622 62-344 (349)
164 2vyi_A SGTA protein; chaperone 98.0 3.4E-05 1.2E-09 62.5 10.8 115 480-631 13-130 (131)
165 2dba_A Smooth muscle cell asso 98.0 9.5E-05 3.3E-09 61.5 13.1 108 549-660 28-142 (148)
166 3q49_B STIP1 homology and U bo 98.0 3.8E-05 1.3E-09 63.0 10.4 94 580-676 9-102 (137)
167 1elr_A TPR2A-domain of HOP; HO 98.0 2.4E-05 8.3E-10 63.5 8.5 108 551-661 6-122 (131)
168 2fbn_A 70 kDa peptidylprolyl i 97.9 4.5E-05 1.5E-09 67.5 10.5 87 581-671 89-176 (198)
169 2dba_A Smooth muscle cell asso 97.9 0.00012 4.2E-09 60.8 12.5 96 579-678 27-126 (148)
170 1elr_A TPR2A-domain of HOP; HO 97.9 7.1E-05 2.4E-09 60.6 10.5 97 581-678 5-106 (131)
171 4b4t_Q 26S proteasome regulato 97.9 0.00027 9.2E-09 71.5 17.0 189 420-608 11-244 (434)
172 1wao_1 Serine/threonine protei 97.9 2.7E-05 9.4E-10 79.4 9.0 115 558-675 15-134 (477)
173 2xev_A YBGF; tetratricopeptide 97.9 0.00014 4.8E-09 58.8 11.6 90 554-644 7-105 (129)
174 1hxi_A PEX5, peroxisome target 97.9 5.4E-05 1.8E-09 60.5 8.8 91 552-643 20-113 (121)
175 2xev_A YBGF; tetratricopeptide 97.9 0.00015 5.3E-09 58.6 11.7 95 583-678 5-103 (129)
176 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 9.6E-05 3.3E-09 75.0 12.7 88 581-672 318-406 (457)
177 2hr2_A Hypothetical protein; a 97.9 0.00016 5.4E-09 59.6 11.3 94 582-677 13-128 (159)
178 2fbn_A 70 kDa peptidylprolyl i 97.8 3.3E-05 1.1E-09 68.4 7.7 120 556-678 11-149 (198)
179 2l6j_A TPR repeat-containing p 97.8 2E-05 6.7E-10 61.9 5.6 96 580-679 4-106 (111)
180 3k9i_A BH0479 protein; putativ 97.8 4.5E-05 1.5E-09 60.6 6.6 80 581-661 28-107 (117)
181 1ihg_A Cyclophilin 40; ppiase 97.8 0.00015 5.3E-09 71.0 11.5 89 580-672 273-362 (370)
182 3k9i_A BH0479 protein; putativ 97.7 3.7E-05 1.3E-09 61.1 5.6 83 592-677 2-87 (117)
183 3ro3_A PINS homolog, G-protein 97.7 0.00015 5.2E-09 61.3 9.5 132 481-643 11-157 (164)
184 3rkv_A Putative peptidylprolyl 97.7 0.00021 7.2E-09 60.6 9.8 95 549-644 11-126 (162)
185 2if4_A ATFKBP42; FKBP-like, al 97.7 9.9E-05 3.4E-09 71.5 8.4 146 514-678 179-326 (338)
186 1wao_1 Serine/threonine protei 97.6 0.00016 5.5E-09 73.7 10.1 90 549-639 40-134 (477)
187 3lvg_A Clathrin heavy chain 1; 97.6 3.7E-05 1.3E-09 74.1 4.5 430 143-637 55-534 (624)
188 3dss_A Geranylgeranyl transfer 97.6 0.0076 2.6E-07 57.0 20.2 135 425-562 41-192 (331)
189 2hr2_A Hypothetical protein; a 97.6 0.00026 8.7E-09 58.4 8.6 62 582-643 59-130 (159)
190 3dss_A Geranylgeranyl transfer 97.5 0.021 7.1E-07 54.0 21.9 204 429-660 90-318 (331)
191 3n71_A Histone lysine methyltr 97.5 0.0003 1E-08 71.1 9.7 98 581-678 352-462 (490)
192 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00061 2.1E-08 69.1 11.4 142 479-643 268-414 (457)
193 2l6j_A TPR repeat-containing p 97.4 0.00021 7.2E-09 55.8 6.3 97 71-169 3-105 (111)
194 3rkv_A Putative peptidylprolyl 97.4 0.00095 3.3E-08 56.5 10.7 98 515-614 12-129 (162)
195 2kat_A Uncharacterized protein 97.4 0.00022 7.6E-09 56.3 6.1 65 579-644 18-82 (115)
196 3lvg_A Clathrin heavy chain 1; 97.4 3.9E-06 1.3E-10 80.6 -5.3 275 157-500 40-325 (624)
197 3ma5_A Tetratricopeptide repea 97.4 0.00043 1.5E-08 52.9 7.1 84 580-664 7-90 (100)
198 2kat_A Uncharacterized protein 97.4 0.00077 2.6E-08 53.0 8.8 79 597-678 2-80 (115)
199 3n71_A Histone lysine methyltr 97.4 0.00071 2.4E-08 68.4 10.2 132 80-238 317-463 (490)
200 1na3_A Designed protein CTPR2; 97.3 0.0018 6E-08 48.1 10.1 82 581-665 10-91 (91)
201 1ihg_A Cyclophilin 40; ppiase 97.3 0.00085 2.9E-08 65.6 10.2 136 480-636 224-362 (370)
202 1klx_A Cysteine rich protein B 97.3 0.0019 6.5E-08 52.8 10.4 87 555-644 31-126 (138)
203 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00084 2.9E-08 64.9 9.4 141 482-643 182-327 (338)
204 1klx_A Cysteine rich protein B 97.2 0.0037 1.3E-07 51.0 11.8 110 493-610 9-127 (138)
205 1dce_A Protein (RAB geranylger 97.0 0.02 6.9E-07 59.4 17.5 165 496-667 46-242 (567)
206 1na3_A Designed protein CTPR2; 97.0 0.0036 1.2E-07 46.3 9.0 82 71-154 8-89 (91)
207 3ma5_A Tetratricopeptide repea 96.8 0.0037 1.3E-07 47.5 7.6 68 68-136 3-70 (100)
208 1dce_A Protein (RAB geranylger 96.8 0.028 9.5E-07 58.3 16.2 144 529-677 44-218 (567)
209 1zu2_A Mitochondrial import re 96.7 0.0021 7E-08 52.9 5.3 59 596-659 62-132 (158)
210 3mkq_A Coatomer beta'-subunit; 96.7 0.12 4.2E-06 56.7 21.4 150 388-572 609-759 (814)
211 3qww_A SET and MYND domain-con 96.6 0.0088 3E-07 59.3 10.5 61 616-676 341-407 (433)
212 3mkq_A Coatomer beta'-subunit; 96.6 0.09 3.1E-06 57.8 20.0 101 356-473 661-761 (814)
213 1zu2_A Mitochondrial import re 96.6 0.0025 8.5E-08 52.4 5.0 57 566-624 63-133 (158)
214 2kc7_A BFR218_protein; tetratr 96.5 0.0074 2.5E-07 45.6 7.3 58 586-644 6-64 (99)
215 3qwp_A SET and MYND domain-con 96.5 0.016 5.6E-07 57.5 11.3 87 590-676 297-396 (429)
216 3ly7_A Transcriptional activat 96.3 0.059 2E-06 51.2 13.1 73 578-655 275-347 (372)
217 1wy6_A Hypothetical protein ST 96.2 0.33 1.1E-05 37.8 15.4 141 489-648 17-157 (172)
218 3bee_A Putative YFRE protein; 96.1 0.079 2.7E-06 39.2 10.6 65 579-644 5-72 (93)
219 3qww_A SET and MYND domain-con 96.1 0.011 3.7E-07 58.7 7.5 62 582-643 342-410 (433)
220 3mkq_B Coatomer subunit alpha; 96.0 0.094 3.2E-06 43.7 11.4 129 522-677 13-141 (177)
221 2kc7_A BFR218_protein; tetratr 96.0 0.034 1.2E-06 41.8 8.4 82 77-168 5-87 (99)
222 3qwp_A SET and MYND domain-con 95.9 0.017 5.7E-07 57.5 7.9 63 581-643 330-399 (429)
223 3ly7_A Transcriptional activat 95.8 0.47 1.6E-05 45.1 16.9 73 546-620 274-348 (372)
224 1pc2_A Mitochondria fission pr 95.7 0.043 1.5E-06 44.5 8.2 66 578-644 30-100 (152)
225 1qsa_A Protein (soluble lytic 95.6 2.5 8.7E-05 43.8 29.2 271 343-643 68-347 (618)
226 3mkq_B Coatomer subunit alpha; 95.5 0.89 3.1E-05 37.9 16.8 130 486-641 12-141 (177)
227 3u64_A Protein TP_0956; tetrat 95.4 0.61 2.1E-05 42.4 15.2 102 565-677 179-295 (301)
228 2v5f_A Prolyl 4-hydroxylase su 95.2 0.079 2.7E-06 40.3 8.0 66 582-650 7-78 (104)
229 3bee_A Putative YFRE protein; 94.8 0.14 4.7E-06 37.9 7.8 68 69-137 3-73 (93)
230 3u64_A Protein TP_0956; tetrat 94.4 0.13 4.4E-06 46.8 8.2 107 528-642 177-296 (301)
231 1nzn_A CGI-135 protein, fissio 94.1 0.21 7.2E-06 38.9 7.7 66 578-644 33-103 (126)
232 3ffl_A Anaphase-promoting comp 93.9 0.16 5.6E-06 41.5 6.9 29 651-679 122-150 (167)
233 1pc2_A Mitochondria fission pr 93.2 0.35 1.2E-05 39.2 7.9 79 89-169 15-98 (152)
234 2v5f_A Prolyl 4-hydroxylase su 93.2 0.59 2E-05 35.3 9.0 67 71-137 4-76 (104)
235 1wy6_A Hypothetical protein ST 93.0 2.6 8.8E-05 33.0 14.2 65 480-545 92-156 (172)
236 2wpv_A GET4, UPF0363 protein Y 91.9 7.9 0.00027 35.9 18.3 167 451-643 36-216 (312)
237 4h7y_A Dual specificity protei 91.5 1.3 4.4E-05 35.5 8.8 96 547-643 11-122 (161)
238 4b4t_P 26S proteasome regulato 90.9 9.5 0.00032 37.8 16.9 182 462-644 30-247 (445)
239 1v54_E Cytochrome C oxidase po 90.2 2.7 9.1E-05 30.8 8.6 64 595-660 25-88 (109)
240 2wpv_A GET4, UPF0363 protein Y 90.2 12 0.0004 34.8 19.2 165 351-541 37-215 (312)
241 2ff4_A Probable regulatory pro 89.7 1.6 5.6E-05 42.5 10.1 79 582-661 173-255 (388)
242 4gns_B Protein CSD3, chitin bi 89.6 1.6 5.5E-05 46.2 10.4 53 587-641 344-397 (754)
243 4h7y_A Dual specificity protei 89.3 3.9 0.00013 32.8 9.7 99 67-167 8-119 (161)
244 4b4t_P 26S proteasome regulato 89.1 19 0.00064 35.7 21.2 255 190-477 31-324 (445)
245 1nzn_A CGI-135 protein, fissio 88.8 2 6.9E-05 33.4 7.8 63 613-677 33-100 (126)
246 1v54_E Cytochrome C oxidase po 88.7 5.2 0.00018 29.3 9.2 63 87-150 25-87 (109)
247 2ff4_A Probable regulatory pro 87.8 2.9 9.8E-05 40.7 10.3 70 76-146 175-249 (388)
248 2qx5_A Nucleoporin NIC96; mRNA 87.8 29 0.00098 36.2 18.3 84 383-477 299-385 (661)
249 4fhn_B Nucleoporin NUP120; pro 87.4 7.2 0.00025 44.3 14.7 21 454-474 848-868 (1139)
250 3lpz_A GET4 (YOR164C homolog); 87.4 19 0.00064 33.7 20.4 134 350-494 38-182 (336)
251 2y69_E Cytochrome C oxidase su 86.9 4.9 0.00017 31.3 8.6 64 595-660 68-131 (152)
252 3lpz_A GET4 (YOR164C homolog); 84.9 25 0.00086 32.8 22.8 129 451-590 38-177 (336)
253 3o48_A Mitochondria fission 1 84.7 7.3 0.00025 30.5 8.9 70 578-650 38-110 (134)
254 4ady_A RPN2, 26S proteasome re 84.2 52 0.0018 35.8 40.9 301 356-665 383-720 (963)
255 2uwj_G Type III export protein 84.1 10 0.00034 27.7 8.5 78 122-205 21-98 (115)
256 4gns_B Protein CSD3, chitin bi 83.9 4.6 0.00016 42.8 10.0 55 622-679 344-399 (754)
257 1y8m_A FIS1; mitochondria, unk 83.0 16 0.00054 29.0 10.8 80 565-644 22-106 (144)
258 2y69_E Cytochrome C oxidase su 82.8 12 0.00043 29.1 9.2 63 87-150 68-130 (152)
259 2p58_C Putative type III secre 82.7 10 0.00036 27.6 8.2 78 122-205 22-99 (116)
260 3txn_A 26S proteasome regulato 81.4 17 0.00058 35.1 12.2 125 552-676 22-164 (394)
261 3txn_A 26S proteasome regulato 81.3 40 0.0014 32.5 16.8 228 413-643 19-283 (394)
262 2uwj_G Type III export protein 80.9 14 0.00048 27.0 8.5 86 428-518 21-106 (115)
263 3o48_A Mitochondria fission 1 80.8 9.8 0.00033 29.8 8.2 26 652-677 79-104 (134)
264 1y8m_A FIS1; mitochondria, unk 80.8 15 0.0005 29.2 9.3 66 546-613 36-108 (144)
265 3ltm_A Alpha-REP4; protein eng 80.5 27 0.00092 30.0 19.5 109 547-664 93-201 (211)
266 2p58_C Putative type III secre 80.3 15 0.00051 26.9 9.2 86 428-518 22-107 (116)
267 1wdy_A 2-5A-dependent ribonucl 79.3 22 0.00074 32.2 12.3 59 251-310 151-213 (285)
268 1qsa_A Protein (soluble lytic 78.0 68 0.0023 33.2 36.5 112 291-406 229-347 (618)
269 1zbp_A Hypothetical protein VP 77.8 12 0.00041 33.5 9.0 26 652-677 99-126 (273)
270 3ffl_A Anaphase-promoting comp 77.2 25 0.00085 28.8 10.0 99 72-170 20-150 (167)
271 4fhn_B Nucleoporin NUP120; pro 76.2 1.1E+02 0.0038 34.7 19.8 53 111-168 816-868 (1139)
272 1wdy_A 2-5A-dependent ribonucl 74.3 49 0.0017 29.7 14.9 20 252-271 109-128 (285)
273 4ady_A RPN2, 26S proteasome re 74.1 1.1E+02 0.0036 33.5 34.7 264 252-524 381-671 (963)
274 3ltj_A Alpharep-4; protein eng 72.0 45 0.0015 28.2 20.3 87 552-643 93-179 (201)
275 3eiq_C Programmed cell death p 71.8 21 0.00073 33.8 9.7 74 248-321 220-298 (358)
276 4b4t_R RPN7, 26S proteasome re 71.6 9.8 0.00033 37.6 7.8 97 549-645 131-238 (429)
277 1zbp_A Hypothetical protein VP 70.0 16 0.00053 32.8 7.8 71 79-150 4-76 (273)
278 3ltm_A Alpha-REP4; protein eng 69.3 53 0.0018 28.0 19.9 162 455-628 40-201 (211)
279 1k1a_A B-cell lymphoma 3-encod 68.8 40 0.0014 29.5 10.9 28 78-105 12-39 (241)
280 1n11_A Ankyrin; clathrin, BAND 68.6 91 0.0031 30.4 16.3 19 354-372 216-234 (437)
281 1k1a_A B-cell lymphoma 3-encod 67.8 59 0.002 28.3 11.8 187 114-312 13-212 (241)
282 3kea_A K1L; tropism, ANK repea 65.1 19 0.00064 33.0 8.0 50 114-167 35-84 (285)
283 3ltj_A Alpharep-4; protein eng 63.9 66 0.0023 27.1 18.4 40 252-291 35-74 (201)
284 2nsz_A Programmed cell death p 63.2 48 0.0017 25.8 8.7 64 351-414 11-79 (129)
285 3eiq_C Programmed cell death p 62.5 1.1E+02 0.0036 29.0 13.3 67 350-416 220-291 (358)
286 1n11_A Ankyrin; clathrin, BAND 62.5 1.2E+02 0.004 29.6 15.9 82 78-167 17-102 (437)
287 3eu9_A Huntingtin-interacting 62.0 58 0.002 28.2 10.6 18 253-270 81-98 (240)
288 2zu6_B Programmed cell death p 60.9 70 0.0024 29.5 10.7 69 249-317 170-243 (307)
289 3esl_A Checkpoint serine/threo 60.5 47 0.0016 28.2 8.5 82 566-649 61-148 (202)
290 3hra_A Ankyrin repeat family p 60.5 46 0.0016 28.0 9.3 60 252-311 110-173 (201)
291 3kae_A CDC27, possible protein 58.3 76 0.0026 26.0 9.0 79 561-641 45-140 (242)
292 3eu9_A Huntingtin-interacting 57.5 31 0.0011 30.1 7.9 81 79-167 13-98 (240)
293 4a1g_A Mitotic checkpoint seri 56.2 78 0.0027 25.5 9.3 44 126-169 84-128 (152)
294 3jxi_A Vanilloid receptor-rela 55.8 27 0.00092 31.2 7.2 56 78-133 8-72 (260)
295 2ion_A PDCD4, programmed cell 55.5 43 0.0015 27.0 7.4 64 351-414 13-81 (152)
296 2nsz_A Programmed cell death p 54.3 62 0.0021 25.2 7.9 65 249-313 11-80 (129)
297 1bd8_A P19INK4D CDK4/6 inhibit 54.1 39 0.0013 26.9 7.4 15 256-270 109-123 (156)
298 3aji_A 26S proteasome non-ATPa 53.7 1E+02 0.0035 26.5 10.6 19 252-270 143-161 (231)
299 4b4t_R RPN7, 26S proteasome re 53.2 53 0.0018 32.3 9.2 60 109-168 133-194 (429)
300 2d2s_A Exocyst complex compone 53.0 29 0.00099 30.6 6.5 19 556-574 25-43 (235)
301 3b7b_A Euchromatic histone-lys 51.5 46 0.0016 29.0 7.9 82 79-168 15-100 (237)
302 3kea_A K1L; tropism, ANK repea 51.4 1.4E+02 0.0047 27.0 11.4 16 400-415 210-225 (285)
303 3esl_A Checkpoint serine/threo 51.1 1.1E+02 0.0039 25.9 11.6 79 535-613 58-148 (202)
304 3hra_A Ankyrin repeat family p 50.3 81 0.0028 26.4 9.1 15 256-270 13-27 (201)
305 2ion_A PDCD4, programmed cell 46.6 53 0.0018 26.5 6.6 65 249-313 13-82 (152)
306 2d2s_A Exocyst complex compone 46.0 71 0.0024 28.1 7.8 88 76-166 22-115 (235)
307 3ljn_A Hypothetical protein; a 45.3 66 0.0022 30.5 8.4 58 252-309 57-114 (364)
308 2qx5_A Nucleoporin NIC96; mRNA 43.5 3E+02 0.01 28.6 22.4 18 87-104 36-53 (661)
309 1oyz_A Hypothetical protein YI 42.9 1.8E+02 0.0063 25.9 21.1 48 411-462 35-82 (280)
310 2rfa_A Transient receptor pote 42.9 1.6E+02 0.0055 25.2 10.9 58 251-309 124-184 (232)
311 2rfa_A Transient receptor pote 42.0 1.6E+02 0.0054 25.2 10.0 152 79-241 7-182 (232)
312 3ljn_A Hypothetical protein; a 42.0 67 0.0023 30.4 7.9 39 232-270 155-195 (364)
313 1bpo_A Protein (clathrin); cla 39.5 2.9E+02 0.0098 27.2 11.9 125 542-676 354-481 (494)
314 3jxi_A Vanilloid receptor-rela 39.2 61 0.0021 28.7 6.8 90 386-476 10-118 (260)
315 2fu4_A Ferric uptake regulatio 39.2 94 0.0032 21.5 6.5 62 96-158 6-68 (83)
316 2zu6_B Programmed cell death p 38.4 2.4E+02 0.0082 26.0 16.5 24 213-236 6-29 (307)
317 3kae_A CDC27, possible protein 38.4 1.2E+02 0.0041 24.9 7.1 88 582-676 34-139 (242)
318 1ug3_A EIF4GI, eukaryotic prot 36.3 2.2E+02 0.0074 26.7 10.2 60 351-410 15-78 (339)
319 2etb_A Transient receptor pote 36.1 1.2E+02 0.0042 26.6 8.3 88 78-167 5-112 (256)
320 4g8k_A 2-5A-dependent ribonucl 36.1 2.6E+02 0.009 25.7 14.5 53 111-167 26-81 (337)
321 2ijq_A Hypothetical protein; s 35.6 1.6E+02 0.0055 23.9 7.7 61 74-135 35-103 (161)
322 3aji_A 26S proteasome non-ATPa 35.2 2.1E+02 0.0072 24.4 10.0 176 78-269 9-193 (231)
323 2r9g_A AAA ATPase, central reg 34.3 2.1E+02 0.0073 24.2 9.3 55 389-444 25-84 (204)
324 4g8k_A 2-5A-dependent ribonucl 34.0 2.8E+02 0.0097 25.5 14.5 58 76-141 26-86 (337)
325 3d9h_A CDNA FLJ77766, highly s 33.0 1.7E+02 0.0059 26.3 8.9 16 255-270 132-147 (285)
326 3d9h_A CDNA FLJ77766, highly s 32.3 2.3E+02 0.0078 25.4 9.6 19 252-270 194-212 (285)
327 3l6a_A Eukaryotic translation 31.8 3.4E+02 0.012 25.7 12.5 27 452-478 16-42 (364)
328 1wty_A Hypothetical protein TT 31.6 91 0.0031 23.8 5.5 12 654-665 56-67 (119)
329 4b4t_S RPN3, 26S proteasome re 31.0 2.6E+02 0.0088 28.0 9.8 60 142-203 231-298 (523)
330 1oyz_A Hypothetical protein YI 30.8 2.9E+02 0.0098 24.6 23.5 58 548-608 205-262 (280)
331 2xig_A Ferric uptake regulatio 30.4 2.1E+02 0.0071 22.8 7.9 63 96-159 16-78 (150)
332 2o03_A Probable zinc uptake re 30.3 72 0.0024 24.8 4.9 45 78-122 16-60 (131)
333 1ug3_A EIF4GI, eukaryotic prot 30.3 3E+02 0.01 25.7 10.0 63 249-311 15-81 (339)
334 3mwm_A ZUR, putative metal upt 29.2 68 0.0023 25.3 4.6 44 78-121 19-62 (139)
335 2wvi_A Mitotic checkpoint seri 29.1 2.3E+02 0.008 23.0 10.4 53 597-650 77-130 (164)
336 4gq2_M Nucleoporin NUP120; bet 29.1 2.6E+02 0.009 30.8 10.7 50 616-665 898-950 (950)
337 2fu4_A Ferric uptake regulatio 29.1 1.4E+02 0.0049 20.5 7.5 61 402-463 6-67 (83)
338 2fe3_A Peroxide operon regulat 28.8 1.8E+02 0.0061 23.0 7.1 62 96-158 11-72 (145)
339 2qq8_A TBC1 domain family memb 28.0 1.7E+02 0.0058 27.3 7.9 79 87-169 169-255 (334)
340 4ets_A Ferric uptake regulatio 27.7 1.5E+02 0.0052 24.1 6.6 70 89-159 14-86 (162)
341 4b4t_S RPN3, 26S proteasome re 27.5 2.2E+02 0.0075 28.5 8.6 63 515-577 232-298 (523)
342 4a1g_A Mitotic checkpoint seri 27.2 2.4E+02 0.0083 22.6 11.6 52 597-649 82-134 (152)
343 2fe3_A Peroxide operon regulat 27.1 1.4E+02 0.0047 23.7 6.1 61 403-464 12-72 (145)
344 2cos_A Serine/threonine protei 27.1 93 0.0032 19.6 3.7 22 658-679 27-50 (54)
345 3bu8_A Telomeric repeat-bindin 26.6 1.3E+02 0.0044 25.8 5.7 48 596-643 88-142 (235)
346 2pnn_A Transient receptor pote 26.6 2.4E+02 0.0084 24.9 8.7 57 77-133 15-80 (273)
347 2keb_A DNA polymerase subunit 25.9 1.9E+02 0.0066 21.0 6.0 57 497-555 27-88 (101)
348 2xig_A Ferric uptake regulatio 25.9 1.8E+02 0.0062 23.2 6.6 61 403-464 17-77 (150)
349 2pm7_A Protein WEB1, protein t 25.5 4.6E+02 0.016 25.2 14.3 26 654-679 339-364 (399)
350 3b7b_A Euchromatic histone-lys 25.4 2.9E+02 0.0098 23.6 8.7 143 114-271 15-167 (237)
351 2p1h_A APAF-1, apoptotic prote 25.0 1.9E+02 0.0064 20.7 6.0 35 258-292 49-83 (94)
352 2etb_A Transient receptor pote 24.8 69 0.0023 28.3 4.4 29 113-141 5-33 (256)
353 1mzb_A Ferric uptake regulatio 24.8 97 0.0033 24.2 4.8 60 98-158 9-69 (136)
354 4ets_A Ferric uptake regulatio 24.8 1.5E+02 0.0053 24.0 6.1 69 395-464 14-85 (162)
355 4aez_C MAD3, mitotic spindle c 24.7 88 0.003 27.1 4.6 62 531-592 131-193 (223)
356 2xai_A ASB-9, ankyrin repeat a 24.6 3.5E+02 0.012 23.6 10.9 17 254-270 140-156 (261)
357 1mzb_A Ferric uptake regulatio 24.3 1.9E+02 0.0064 22.6 6.3 49 76-124 21-70 (136)
358 2w57_A Ferric uptake regulatio 24.0 2E+02 0.0069 22.9 6.6 63 96-159 6-69 (150)
359 3ygs_P Procaspase 9; apoptosis 23.4 1.4E+02 0.0047 21.7 4.9 38 361-398 51-88 (97)
360 3eyy_A Putative iron uptake re 22.6 1.1E+02 0.0037 24.3 4.7 59 98-158 10-68 (145)
361 2pnn_A Transient receptor pote 22.0 1.9E+02 0.0067 25.6 7.0 18 458-475 108-125 (273)
362 2r9g_A AAA ATPase, central reg 21.6 3.7E+02 0.013 22.7 8.7 55 490-545 25-84 (204)
363 3ygs_P Procaspase 9; apoptosis 21.2 1.2E+02 0.004 22.1 4.2 37 462-498 51-87 (97)
364 2crb_A Nuclear receptor bindin 21.2 1.2E+02 0.0041 21.8 3.8 21 618-638 18-38 (97)
365 3eyy_A Putative iron uptake re 21.1 1.9E+02 0.0063 23.0 5.8 48 76-124 22-69 (145)
366 3cqc_A Nuclear pore complex pr 21.0 61 0.0021 29.3 3.1 26 655-680 38-63 (270)
367 2f6m_A Suppressor protein STP2 20.8 1.6E+02 0.0055 19.5 4.2 45 74-119 4-48 (65)
368 3t8k_A Uncharacterized protein 20.7 2.6E+02 0.0088 23.1 7.0 168 252-448 10-186 (186)
369 3twr_A Tankyrase-2; ankyrin re 20.5 3.2E+02 0.011 21.5 8.8 17 151-167 14-30 (165)
370 2w57_A Ferric uptake regulatio 20.4 1.1E+02 0.0039 24.4 4.3 49 76-124 20-69 (150)
371 2o03_A Probable zinc uptake re 20.3 1.6E+02 0.0056 22.7 5.2 48 111-158 14-61 (131)
372 3qye_A TBC1 domain family memb 20.1 5.2E+02 0.018 23.9 9.8 106 93-200 209-319 (331)
373 3ctd_A Putative ATPase, AAA fa 20.1 4.1E+02 0.014 22.7 9.0 70 69-138 29-106 (213)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-38 Score=342.73 Aligned_cols=490 Identities=10% Similarity=-0.030 Sum_probs=389.7
Q ss_pred CChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHH
Q 047571 156 GSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHAL 235 (681)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 235 (681)
|....+...++.++.++...|+.++..+.+.| ++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQ--QYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp ---------------CHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccCCCCCccccchHHHHHHHHHHHHHHHHcc--CchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 33444444555555555555666666666666 66667777777764 467888888899999999999999999987
Q ss_pred HHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC-------------------ChhhHHHHHHHHHhcCChHHHH
Q 047571 236 LIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR-------------------DIVVWGSMIAGFAHNRLRWEAL 296 (681)
Q Consensus 236 ~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~ 296 (681)
+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|+
T Consensus 143 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 143 EDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp TCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 7543 677889999999999999999999999965443 3789999999999999999999
Q ss_pred HHHHHHHHcCCCCCh-hhHHHHHHHHhhhhhhcc--cchh-hhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhh
Q 047571 297 DCARWMIREGIYPNS-VVLTILLPVIGEAWARKL--GQEV-HAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYE 372 (681)
Q Consensus 297 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 372 (681)
++|++|.+.+ |+. ..+..+...+...+..+. +..+ +..+... +......+|+.++..|.+.|++++|.++|++
T Consensus 221 ~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 221 ECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE-DAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG-GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc-hHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 9999999864 443 344444443332222211 1111 3333322 3444455677778899999999999999999
Q ss_pred cCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhH
Q 047571 373 TEE--RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSI 450 (681)
Q Consensus 373 ~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 450 (681)
+.+ ++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 988 689999999999999999999999999999875 3377889999999999999999999999998764 667889
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccc
Q 047571 451 ITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQL 527 (681)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 527 (681)
++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..+..+|.+.
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 99999999999999999999998764 457799999999999999999999999999864 45778999999999999
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--------CC--hhhHHHHHHHHHcCCChH
Q 047571 528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--------KG--SITWTAIIEAYGYNDLCQ 597 (681)
Q Consensus 528 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~--~~~~~~l~~~~~~~~~~~ 597 (681)
|++++|.++++.+.+.. +.++.++..++.+|.+.|++++|.++|+++.. |+ ..+|..++.+|.+.|+++
T Consensus 455 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 455 GNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 99999999999999865 34688899999999999999999999988743 44 578999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHh
Q 047571 598 EALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILT 662 (681)
Q Consensus 598 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 662 (681)
+|++.++++.+.+ +.+..+|..+..+|.+.|++++|.++|+++.+. .| +...+..+..+|.
T Consensus 534 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 534 AAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI---SPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCChHHHHHHHHHHh
Confidence 9999999998864 558899999999999999999999999988764 44 3667777777664
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-38 Score=338.15 Aligned_cols=478 Identities=9% Similarity=-0.037 Sum_probs=314.1
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 047571 70 KNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLV 149 (681)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 149 (681)
++...|+.++..+.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 46678999999999999999999999999854 568889999999999999999999999988643 67889999999
Q ss_pred HHhhcCCChhHHHHhhhhcCCCC-------------------CccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCC-
Q 047571 150 KMYTSCGSFEDAEKVFDESSSES-------------------VYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLN- 209 (681)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~-------------------~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~- 209 (681)
.+|.+.|++++|.++|+++...+ ..+|+.++.++.+.| ++++|+..|++|.+.+ |+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~--p~~ 233 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS--NFDRAKECYKEALMVD--AKC 233 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhC--chh
Confidence 99999999999999999644332 456888888888888 8888888888887754 33
Q ss_pred hhhHHHHHHHhhccCchhhhH--HH-HHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHH
Q 047571 210 VYTFSCVIKSFAGASALMQGL--KT-HALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD--RDIVVWGSMIA 284 (681)
Q Consensus 210 ~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~ 284 (681)
...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+ ++..+|+.++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 313 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 334444444443333222211 11 44444444445556666677777788888888888888776 67778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHH
Q 047571 285 GFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMN 364 (681)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 364 (681)
+|.+.|++++|+++|+++.+.+ | .+..++..++.++.+.|+++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~--~-----------------------------------~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID--P-----------------------------------YNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--T-----------------------------------TCCTTHHHHHHHHHHHTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC--c-----------------------------------ccHHHHHHHHHHHHHhCCHH
Confidence 8888888888888888777643 1 12233344555555555555
Q ss_pred HHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 047571 365 SAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVK 441 (681)
Q Consensus 365 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 441 (681)
+|..+++.+.. .+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.+
T Consensus 357 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555554432 245556666666666666666666666665532 22344555566666666666666666665554
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHH
Q 047571 442 NQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMA 518 (681)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 518 (681)
.+ +.+..++..++.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|+++|+++.+..
T Consensus 436 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------- 505 (597)
T 2xpi_A 436 LF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV--------- 505 (597)
T ss_dssp TT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred hC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh---------
Confidence 43 33444555555555555555555555554432 234445555555555555555555555444330
Q ss_pred HHHHHhccccchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcC
Q 047571 519 RMLSVSGQLKALKLGKEIHGQVLKKDFASV--PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYN 593 (681)
Q Consensus 519 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 593 (681)
.+.+..|+ ..++..++.+|.+.|++++|...++++.. | +..+|..+..+|...
T Consensus 506 ----------------------~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 506 ----------------------KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563 (597)
T ss_dssp ----------------------HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred ----------------------hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 00033444 45566666666666666666666665543 3 466888889999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571 594 DLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN 626 (681)
Q Consensus 594 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 626 (681)
|++++|.+.|+++.+.. +.+...+..+..+|.
T Consensus 564 g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 564 KIPGLAITHLHESLAIS-PNEIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 99999999999998853 336677777666553
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.4e-29 Score=257.03 Aligned_cols=221 Identities=9% Similarity=0.006 Sum_probs=186.4
Q ss_pred HHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhc
Q 047571 90 EALVILDYMDQQGIPVNVT-TFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDES 168 (681)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 168 (681)
.+..+.+.+.+++..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+....+..
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~----- 82 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP----- 82 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC-----
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh-----
Confidence 4556667777777666554 5899999999999999999999999999999999999999999998877543211
Q ss_pred CCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHH
Q 047571 169 SSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILR 248 (681)
Q Consensus 169 ~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 248 (681)
.+ ..+.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 83 -----------------~~--~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 83 -----------------NP--GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp -----------------CH--HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -----------------cc--hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 11 67889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCChHHHHHHHhccCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhh
Q 047571 249 TSLIDMYFKCGKIKLARRVFDETGD----RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEA 324 (681)
Q Consensus 249 ~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 324 (681)
+.+|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999864 799999999999999999999999999999999999999999999999887
Q ss_pred hhhcccchhh
Q 047571 325 WARKLGQEVH 334 (681)
Q Consensus 325 ~~~~~a~~~~ 334 (681)
+..+.+...+
T Consensus 224 ~a~~~g~~~~ 233 (501)
T 4g26_A 224 VATKTGVKKW 233 (501)
T ss_dssp HHHTCCBSCC
T ss_pred cchhhhhhhh
Confidence 6665554444
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.9e-28 Score=249.00 Aligned_cols=216 Identities=10% Similarity=0.089 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHcCcCCCH-HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 047571 395 EQALRSIAWMQQEGFRPDV-VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDE 473 (681)
Q Consensus 395 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 473 (681)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3455566777777765543 457888999999999999999999999999999999999999999887654221
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHH
Q 047571 474 MEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAA 553 (681)
Q Consensus 474 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 553 (681)
.+.+.+++|.++|++|...|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.|+..
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~--- 141 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR--- 141 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH---
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc---
Confidence 2234567888899999999999999999999999999999999999999998888776654
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 047571 554 ENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADE 633 (681)
Q Consensus 554 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 633 (681)
+||++|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++.|++++
T Consensus 142 ----------------------------tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 142 ----------------------------SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK 193 (501)
T ss_dssp ----------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------------eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHH
Confidence 6777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhhcCCCCCChhHHHHHHHHHhhc
Q 047571 634 ACRIFNVMSRGYKIEALEEHYLIMIDILTRF 664 (681)
Q Consensus 634 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 664 (681)
|.+++++|++. +..|+..||+.+++.+++.
T Consensus 194 A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 194 VYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 88888888776 8888888888888877654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=8.8e-24 Score=213.19 Aligned_cols=369 Identities=13% Similarity=0.069 Sum_probs=254.4
Q ss_pred HHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhc
Q 047571 252 IDMYFKCGKIKLARRVFDETGD--R-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARK 328 (681)
Q Consensus 252 i~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 328 (681)
...+.+.|++++|.+.++.+.+ | +...+..+...+...|++++|..+++...+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----------------------- 62 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----------------------- 62 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------------
Confidence 3444555666666655554432 2 3334444555555555555555555554442
Q ss_pred ccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 047571 329 LGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE--R-NEILWTALMSGYVSNGRLEQALRSIAWMQ 405 (681)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 405 (681)
.+.+...+..+...+.+.|++++|...|+++.. | +..+|..+..++.+.|++++|...|+++.
T Consensus 63 --------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 63 --------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred --------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334445556666666777777777777666542 2 44567777777777777777777777776
Q ss_pred HcCcCCCH-HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-Ccch
Q 047571 406 QEGFRPDV-VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVIS 481 (681)
Q Consensus 406 ~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~ 481 (681)
+. .|+. ..+..+...+...|++++|.+.|+.+.+.. +.+..++..+...+.+.|++++|...|+++.+ | +...
T Consensus 129 ~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T 1w3b_A 129 QY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp HH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred Hh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 64 3443 344455556667777777777777777654 34556777777777777888877777777654 3 3456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047571 482 WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM 561 (681)
Q Consensus 482 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 561 (681)
|..+...+...|++++|+..+++..... +.+..++..+..++...|++++|...++++.+.+ +.++.++..+..+|.+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 7777777777888888888887776642 2345677777777788888888888888777753 2246677888888888
Q ss_pred cCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047571 562 CGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIF 638 (681)
Q Consensus 562 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (681)
.|++++|...++++.. .+..+|+.+...+...|++++|++.++++.+.. +.+..++..+..++.+.|++++|.+.+
T Consensus 284 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888887765 346788888889999999999999999988752 446788889999999999999999999
Q ss_pred HHhhhcCCCCCC-hhHHHHHHHHHhhcCC
Q 047571 639 NVMSRGYKIEAL-EEHYLIMIDILTRFGR 666 (681)
Q Consensus 639 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 666 (681)
+++.+. .|+ ...|..+..++.+.|+
T Consensus 363 ~~a~~~---~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 363 KEAIRI---SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTT---CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhh---CCCCHHHHHhHHHHHHHccC
Confidence 988753 443 6778888877776664
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.7e-23 Score=211.19 Aligned_cols=370 Identities=11% Similarity=0.006 Sum_probs=234.0
Q ss_pred HhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHH
Q 047571 219 SFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEA 295 (681)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 295 (681)
.+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.... .+..+|..+...+.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 3444556666666665555442 22334444555555666666666666654332 2455666666666666777777
Q ss_pred HHHHHHHHHcCCCCCh-hhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcC
Q 047571 296 LDCARWMIREGIYPNS-VVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETE 374 (681)
Q Consensus 296 ~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 374 (681)
+..|+++.+. .|+. .+|..+..++...|+++.|...+..+.+. .+.
T Consensus 87 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------- 133 (388)
T 1w3b_A 87 IEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPD----------------------------- 133 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTT-----------------------------
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------------
Confidence 7666666653 2332 23433333333333333333333333322 111
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHH
Q 047571 375 ERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSL 454 (681)
Q Consensus 375 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 454 (681)
+...+..+...+...|++++|.+.|+++.+.. +-+..++..+...+...|++++|...|+++.+.+ +.+...+..+
T Consensus 134 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 209 (388)
T 1w3b_A 134 --LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINL 209 (388)
T ss_dssp --CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred --cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 23344455555555666666666666665542 1234555566666666666666666666666654 3345556666
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchH
Q 047571 455 MIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALK 531 (681)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 531 (681)
...+...|++++|...+++... | +..++..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++...|+++
T Consensus 210 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 6666777777777776665543 3 34566777777777777777777777777653 334556777777777778888
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 532 LGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 532 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
+|...++++.+.. +.++.++..+..++.+.|++++|...++++.. |+ ..+|..+...+...|++++|++.|+++.+
T Consensus 289 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 289 EAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888887777653 44677888888889999999999999888776 43 67899999999999999999999999998
Q ss_pred CCCCC-CHHHHHHHHHHHhccCC
Q 047571 609 GGFTP-NHFTFKVLLSICNQAGF 630 (681)
Q Consensus 609 ~g~~p-~~~~~~~l~~~~~~~g~ 630 (681)
. .| +...|..+...+...|+
T Consensus 368 ~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 368 I--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp T--CTTCHHHHHHHHHHHHHTCC
T ss_pred h--CCCCHHHHHhHHHHHHHccC
Confidence 4 45 67788888877766653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.8e-21 Score=200.10 Aligned_cols=424 Identities=10% Similarity=-0.071 Sum_probs=296.9
Q ss_pred hHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHh
Q 047571 212 TFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD---RDIVVWGSMIAGFAH 288 (681)
Q Consensus 212 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 288 (681)
.+......+.+.|++++|...|+.+.+.. |+..++..+..++.+.|++++|...++++.+ .+..+|..+..++.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 34445556666777777777777777665 5667777777777777777777777766543 355677777777888
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHH---HHHHHhcCCHHH
Q 047571 289 NRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSL---VDMYCKCRDMNS 365 (681)
Q Consensus 289 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~ 365 (681)
.|++++|...|+++...+. ++......++..+........+.+.+..+... +..++......- ............
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTA-TATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCChhhHHHhhccCCchhHH
Confidence 8888888888877777642 33444444444444433333333333222111 000000000000 000000111111
Q ss_pred HHHHHhhcC---------CC-ChhhHHHHHHHHHh---CCChHHHHHHHHHHHH-----cCc--------CCCHHHHHHH
Q 047571 366 AWRVFYETE---------ER-NEILWTALMSGYVS---NGRLEQALRSIAWMQQ-----EGF--------RPDVVTVATV 419 (681)
Q Consensus 366 a~~~~~~~~---------~~-~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~g~--------~p~~~~~~~l 419 (681)
+...+.... .+ +...+......+.. .|++++|+..++++.+ ... +.+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 111111111 11 23444445555554 8999999999999887 311 2234567777
Q ss_pred HHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChh
Q 047571 420 IPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLD 496 (681)
Q Consensus 420 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 496 (681)
...+...|++++|..+++.+.+.... ...+..+...+...|++++|...++++.+ .+...|..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999887633 88888999999999999999999998765 35668888999999999999
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCC
Q 047571 497 DALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVP 576 (681)
Q Consensus 497 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 576 (681)
+|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.++..+..+...|...|++++|...++++.
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998864 3356788888999999999999999999998864 3357788999999999999999999998876
Q ss_pred C--CC-------hhhHHHHHHHHHc---CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 577 V--KG-------SITWTAIIEAYGY---NDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 577 ~--~~-------~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
. |+ ...|..+...+.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++.+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 6 22 3388999999999 999999999999999853 447888999999999999999999999988774
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8.1e-21 Score=199.50 Aligned_cols=426 Identities=9% Similarity=-0.026 Sum_probs=221.4
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047571 72 PRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKM 151 (681)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (681)
...+......+.+.|++++|+..|+++.+.+ |+..++..+..++...|++++|...++.+.+.+ +.+...+..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3467788899999999999999999998875 689999999999999999999999999999887 6677899999999
Q ss_pred hhcCCChhHHHHhhhhcCCC---CCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhh
Q 047571 152 YTSCGSFEDAEKVFDESSSE---SVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQ 228 (681)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 228 (681)
+...|++++|...|+++... +......++..+.... ....+.+.+..+...+..|+...+..-............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ--AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHH--HHHHHTTC---------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999876532 2333444444333332 222333333222222222222111111110111111111
Q ss_pred hHHHHHHHHHhCC---------CCCcHHHhHHHHHHHh---cCChHHHHHHHhccCC----------------C-ChhhH
Q 047571 229 GLKTHALLIKNGF---------VDYLILRTSLIDMYFK---CGKIKLARRVFDETGD----------------R-DIVVW 279 (681)
Q Consensus 229 a~~~~~~~~~~g~---------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~ 279 (681)
...+...+..... +.+...+......+.. .|++++|...|+++.+ + +..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111100 1112333333333333 6667777666665433 1 23456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHh
Q 047571 280 GSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCK 359 (681)
Q Consensus 280 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (681)
..+...+...|++++|...++++.+.. |+...+..+...+...|+++.|...+..+.+. .+.+..++..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHH
Confidence 667777777777777777777776654 22555555666666666666666666665544 22333444445555555
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHH
Q 047571 360 CRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIH 436 (681)
Q Consensus 360 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 436 (681)
.|++++|...++...+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555554444321 133344444444444445555544444444331 112333444444444444444444444
Q ss_pred HHHHHhCCC-CC----hhHHHHHHHHHHh---cCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHh
Q 047571 437 AYAVKNQFL-PN----VSIITSLMIMYSK---CGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSM 505 (681)
Q Consensus 437 ~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m 505 (681)
+.+.+.... ++ ...+..+...+.. .|++++|...++++.+ .+..++..+...|.+.|++++|...|++.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444332111 01 1134444444444 4444444444444322 12233444444444444444444444444
Q ss_pred Hh
Q 047571 506 QL 507 (681)
Q Consensus 506 ~~ 507 (681)
.+
T Consensus 476 ~~ 477 (514)
T 2gw1_A 476 AD 477 (514)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.1e-19 Score=192.10 Aligned_cols=419 Identities=11% Similarity=-0.014 Sum_probs=198.3
Q ss_pred HHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHH
Q 047571 177 NALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYF 256 (681)
Q Consensus 177 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 256 (681)
..+...+.+.| ++++|+..|+++.+.. +.+..+|..+..++...|++++|.+.++.+.+.+ +.+..++..+..++.
T Consensus 29 ~~~g~~~~~~g--~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 29 KNRGNHFFTAK--NFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHTT--CCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--cHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 33444455555 6666666666666543 2345566666777777777777777777776654 334566666777777
Q ss_pred hcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCChhhHHHHHHHHhhhhhhccc
Q 047571 257 KCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIRE------GIYPNSVVLTILLPVIGEAWARKLG 330 (681)
Q Consensus 257 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~a 330 (681)
..|++++|.+.|+.+ ..+....+..+..+...+....|...++.+... ...|+.......+ ...+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF----GIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----HTSCHHHH
T ss_pred HcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----HhcChHHH
Confidence 777777777777533 222222223344444555556666666666432 1223322222211 11111111
Q ss_pred chhhhhhhhccCCCCCch-HHhHHHHHHHhc--------CCHHHHHHHHhhcCCCC----------hhhHHHHHHHHHhC
Q 047571 331 QEVHAYVLKNERYSEELF-VRSSLVDMYCKC--------RDMNSAWRVFYETEERN----------EILWTALMSGYVSN 391 (681)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~----------~~~~~~li~~~~~~ 391 (681)
...+.... ...+... ....+...+... |++++|..+++.+.+.+ ..++..+...+...
T Consensus 180 ~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 180 VSSVNTSS---NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHTSCCCC---SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhcc---ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 11111110 1111111 112222221111 24445555554444321 11233444444455
Q ss_pred CChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 047571 392 GRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLF 471 (681)
Q Consensus 392 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 471 (681)
|++++|...+++..+. .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5555555555555443 2334444444445555555555555555544433 223444444444444555555555444
Q ss_pred hhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhH
Q 047571 472 DEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFV 551 (681)
Q Consensus 472 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 551 (681)
+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.++..
T Consensus 334 -------------------------------~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 380 (537)
T 3fp2_A 334 -------------------------------QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV 380 (537)
T ss_dssp -------------------------------HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred -------------------------------HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 4444432 1122334444444444444444444444444432 223444
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhCCC--CC-------hhhHHHHHHHHHcC----------CChHHHHHHHHHHHhCCCC
Q 047571 552 AAENIKMYGMCGFLECAKLVFDAVPV--KG-------SITWTAIIEAYGYN----------DLCQEALSLFDKMRNGGFT 612 (681)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-------~~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~g~~ 612 (681)
+..+...|...|++++|...++++.. |+ ...+..+...+... |++++|+..++++.+.. +
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p 459 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-P 459 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-C
Confidence 45555555555555555555554433 10 11223334445555 67777777777766642 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 613 PNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 613 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
.+...+..+..++.+.|++++|.+.|+...+.
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 35666666777777777777777777766553
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=7.5e-19 Score=185.57 Aligned_cols=435 Identities=11% Similarity=-0.001 Sum_probs=287.6
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047571 72 PRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKM 151 (681)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (681)
...+..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888899999999999999999998775 4578889999999999999999999999998887 5677888888888
Q ss_pred hhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHH
Q 047571 152 YTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLK 231 (681)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 231 (681)
+...|++++|.+.|+.+. .++...+..+..+.. .+....|..
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~-------------------------------------~~~~~~a~~ 144 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLE-------------------------------------RNLNKQAMK 144 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHH-------------------------------------HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHH-------------------------------------HHHHHHHHH
Confidence 988999999888886332 111111111222222 222334444
Q ss_pred HHHHHHHhC--CCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChh---hHHHHHHHHHh--------cCChHHHHHH
Q 047571 232 THALLIKNG--FVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIV---VWGSMIAGFAH--------NRLRWEALDC 298 (681)
Q Consensus 232 ~~~~~~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~a~~~ 298 (681)
.++.+.... ..+........+..+....+.+.+...+......+.. ....+...+.. .|++++|..+
T Consensus 145 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 145 VLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM 224 (537)
T ss_dssp HHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 444443220 0001111122344455666667776666665554332 23333222221 2467788888
Q ss_pred HHHHHHcCCCCCh-hhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC--
Q 047571 299 ARWMIREGIYPNS-VVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE-- 375 (681)
Q Consensus 299 ~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 375 (681)
++++.+. .|+. ..+..+. .++..+...+...|++++|...|+....
T Consensus 225 ~~~~l~~--~p~~~~~~~~~~-----------------------------~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~ 273 (537)
T 3fp2_A 225 YHSLLSA--NTVDDPLRENAA-----------------------------LALCYTGIFHFLKNNLLDAQVLLQESINLH 273 (537)
T ss_dssp HHHHHC----CCCHHHHHHHH-----------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHH--CCCcchhhHHHH-----------------------------HHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 8877754 2332 1221111 1234566778889999999999988764
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHH
Q 047571 376 RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLM 455 (681)
Q Consensus 376 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 455 (681)
|+...|..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 351 (537)
T 3fp2_A 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLA 351 (537)
T ss_dssp CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 456788889999999999999999999998864 3357788888999999999999999999999875 44567788888
Q ss_pred HHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHH
Q 047571 456 IMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKL 532 (681)
Q Consensus 456 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 532 (681)
..+...|++++|...++++.+ .+...+..+...+...|++++|...|+++.+.......
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------------------ 413 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK------------------ 413 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh------------------
Confidence 888888888888888887754 34557777888888888888888888887653200000
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhc----------CCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHH
Q 047571 533 GKEIHGQVLKKDFASVPFVAAENIKMYGMC----------GFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEA 599 (681)
Q Consensus 533 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a 599 (681)
.......+.....+|... |++++|...++++.. | +...|..+...|...|++++|
T Consensus 414 ------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 414 ------------IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp ------------CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 000111122223333344 555555555554443 2 345677788888888888888
Q ss_pred HHHHHHHHhC
Q 047571 600 LSLFDKMRNG 609 (681)
Q Consensus 600 ~~~~~~m~~~ 609 (681)
.+.|++..+.
T Consensus 482 ~~~~~~al~~ 491 (537)
T 3fp2_A 482 IELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888874
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=3.2e-19 Score=183.79 Aligned_cols=367 Identities=11% Similarity=0.019 Sum_probs=239.5
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC
Q 047571 61 FPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLEN 140 (681)
Q Consensus 61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 140 (681)
+...+...|.++..+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+.+.+.+ +.
T Consensus 15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 92 (450)
T 2y4t_A 15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MD 92 (450)
T ss_dssp --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 556667777888899999999999999999999999998764 5578899999999999999999999999999987 66
Q ss_pred chhHHHHHHHHhhcCCChhHHHHhhhhcCCCCC------ccHHHHHH------------HHHHcCCcChhhHHHHHHHHH
Q 047571 141 NGFLRTKLVKMYTSCGSFEDAEKVFDESSSESV------YPWNALLR------------GAVIAGKKRYRGVLFNYMKMR 202 (681)
Q Consensus 141 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~ll~------------~~~~~~~~~~~~a~~~~~~m~ 202 (681)
+...+..+..+|.+.|++++|.+.|+++...++ ..+..+.. .+...| ++++|+..|+++.
T Consensus 93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG--DYTAAIAFLDKIL 170 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 788999999999999999999999998765333 33444432 255555 6666666666666
Q ss_pred HcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC--C-ChhhH
Q 047571 203 ELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD--R-DIVVW 279 (681)
Q Consensus 203 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~ 279 (681)
+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...|...|++++|...|+++.. | +...+
T Consensus 171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 248 (450)
T 2y4t_A 171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 248 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH
Confidence 542 2344556666666666666666666666665543 33455666666666666666666666655432 2 22333
Q ss_pred HHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCc
Q 047571 280 GSM------------IAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEEL 347 (681)
Q Consensus 280 ~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 347 (681)
..+ ...+.+.|++++|+..|+++.+. .|+...+. .
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~-------------------------------~ 295 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYT-------------------------------V 295 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHH-------------------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHH-------------------------------H
Confidence 333 45555556666666666555542 22211100 2
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCH-HHHHHHH---
Q 047571 348 FVRSSLVDMYCKCRDMNSAWRVFYETEE--R-NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDV-VTVATVI--- 420 (681)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll--- 420 (681)
..+..+...+.+.|++++|...++.+.+ | +..+|..+..+|...|++++|...+++..+. .|+. ..+..+.
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 3456667777777777777777776542 2 5667777888888888888888888887764 3443 3333333
Q ss_pred ---------HHhhccC-----ChhHHHHHHHHH-HHhCC--CCC-------hhHHHHHHHHHHhcCChHHHH
Q 047571 421 ---------PVCSQLK-----ALNHGKEIHAYA-VKNQF--LPN-------VSIITSLMIMYSKCGVLDYSL 468 (681)
Q Consensus 421 ---------~~~~~~~-----~~~~a~~~~~~~-~~~~~--~~~-------~~~~~~l~~~~~~~g~~~~a~ 468 (681)
..+...| +.+++.+.++.+ .+... .++ ...+..+..+|...++.++..
T Consensus 374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 1233334 566777777763 33211 122 236778888888888876644
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=2.6e-19 Score=184.48 Aligned_cols=293 Identities=10% Similarity=-0.018 Sum_probs=140.8
Q ss_pred hhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 047571 312 VVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGY 388 (681)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 388 (681)
..+..+...+.+.|+++.|...+..+.+. .+.+...+..+..++...|++++|...|+.+.+ .+..++..+...|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 34444555555555555555555555443 233444555555555555555555555554432 1344455555555
Q ss_pred HhCCChHHHHHHHHHHHHcCcCCCH----HHHHHHHHH------------hhccCChhHHHHHHHHHHHhCCCCChhHHH
Q 047571 389 VSNGRLEQALRSIAWMQQEGFRPDV----VTVATVIPV------------CSQLKALNHGKEIHAYAVKNQFLPNVSIIT 452 (681)
Q Consensus 389 ~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 452 (681)
.+.|++++|...|+++.+. .|+. ..+..+... +...|++++|...++.+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 5555555555555555443 2222 233333221 444444455555444444432 22344444
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHH
Q 047571 453 SLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKL 532 (681)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 532 (681)
.+..+|.+.|++++| ++.|+++.+.. +.+..++..+...+...|++++
T Consensus 182 ~l~~~~~~~g~~~~A-------------------------------~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 182 LRAECFIKEGEPRKA-------------------------------ISDLKAASKLK-NDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHHHTTCGGGG-------------------------------HHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHH-------------------------------HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 444444444444444 44444444331 2233444444444444444444
Q ss_pred HHHHHHHHHHcCCCCChhHHHHH------------HHHHHhcCCHHHHHHHhhhCCC--CC-----hhhHHHHHHHHHcC
Q 047571 533 GKEIHGQVLKKDFASVPFVAAEN------------IKMYGMCGFLECAKLVFDAVPV--KG-----SITWTAIIEAYGYN 593 (681)
Q Consensus 533 a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~l~~~~~~~ 593 (681)
|...++.+.+... .+...+..+ ...+.+.|++++|...|+++.. |+ ...|..+...+.+.
T Consensus 230 A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 230 SLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence 4444444443321 112222222 4555555555555555555443 22 22455555566666
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 594 DLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 594 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
|++++|+..++++.+.. +.+...|..+..+|...|++++|.+.++.+.+
T Consensus 309 g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 66666666666655532 23455566666666666666666666665543
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=2.6e-15 Score=162.42 Aligned_cols=535 Identities=11% Similarity=0.058 Sum_probs=344.6
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHH
Q 047571 69 EKNPRAIYKDIQRFARQNKLKEALVILDYMDQQG--IPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRT 146 (681)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (681)
..+|.-....+++|...|.+.+|++++++..-.+ +.-+....+.++....+. +..+..+....+.... ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HH
Confidence 4566667888999999999999999999997442 123456677777776666 5566666665554211 33
Q ss_pred HHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCch
Q 047571 147 KLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASAL 226 (681)
Q Consensus 147 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 226 (681)
-+...+...|.+++|..+|++... .....+.++. ..+ ++++|.++.++. -+..+|..+.+++...|++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~--nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIG--NLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHh--hHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 366777888999999999988641 1111222322 455 788888887753 2466788888999999999
Q ss_pred hhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047571 227 MQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD--RDIVVWGSMIAGFAHNRLRWEALDCARWMIR 304 (681)
Q Consensus 227 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 304 (681)
++|...|... .|...|..++.++.+.|++++|.+++....+ ++....+.++.+|++.+++++...+. .
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 9999888553 4667788889999999999999999876443 33334455888888888887544432 1
Q ss_pred cCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHH
Q 047571 305 EGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTAL 384 (681)
Q Consensus 305 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 384 (681)
.++...|..+...|...|+++.|...|..+ ..|..+..++++.|+++.|.+.+++. .+..+|..+
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev 1256 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEV 1256 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHH
Confidence 356667777888888999999999988874 36788999999999999999998876 456788888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--cC
Q 047571 385 MSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK--CG 462 (681)
Q Consensus 385 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g 462 (681)
-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++...... +-....|+-+...|++ -+
T Consensus 1257 ~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 8888888888888775543 33466667788888899999999999987776544 4455567666666665 34
Q ss_pred ChHHHHHHHhhCCC--------CCcchHHHHHHHHHhcCChhHHHHHH-------------HHhHhCCCCCCHHHHHHHH
Q 047571 463 VLDYSLKLFDEMEV--------RNVISWTAMIDSCIENGRLDDALGVF-------------RSMQLSKHRPDSVAMARML 521 (681)
Q Consensus 463 ~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~-------------~~m~~~g~~p~~~~~~~ll 521 (681)
+..++.++|..-.. .+...|.-+...|.+.|+++.|.... ++... -..|...|...+
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai 1408 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAI 1408 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHH
Confidence 55566666654433 24567888888888999988887432 22111 133445555555
Q ss_pred HHhcccc---------------chHHHHHHHH-------------HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhh
Q 047571 522 SVSGQLK---------------ALKLGKEIHG-------------QVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFD 573 (681)
Q Consensus 522 ~~~~~~~---------------~~~~a~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 573 (681)
.-|...+ +.+++.+++. .+.. ..+..+-.++...|...++++.-..-.+
T Consensus 1409 ~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~---~n~~~Vneal~el~ieeed~~~Lr~si~ 1485 (1630)
T 1xi4_A 1409 QFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFITEEDYQALRTSID 1485 (1630)
T ss_pred HHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHH---hcchhhhHHHHHHhcCccchHHHHHHHh
Confidence 5444333 3334333333 2221 1223333444445544444432222221
Q ss_pred hC------------CCCChhhHHHHH-HHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047571 574 AV------------PVKGSITWTAII-EAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNV 640 (681)
Q Consensus 574 ~~------------~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (681)
.- .+....-+..+. ..|.+.|++++|.+++++-.. |.-.+.+..+.|+.+.+.+++.-
T Consensus 1486 ~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l---------~~dAm~~a~~S~d~e~~e~ll~~ 1556 (1630)
T 1xi4_A 1486 AYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL---------YKDAMQYASESKDTELAEELLQW 1556 (1630)
T ss_pred hccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC---------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 112222222222 234445777777777765432 44456666777777777766666
Q ss_pred hhhcCCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 047571 641 MSRGYKIEALEEHYLIMIDILTRFGRIEEAHR 672 (681)
Q Consensus 641 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 672 (681)
.... -+.+.|...+..+...=+.+-+++
T Consensus 1557 F~~~----~~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1557 FLQE----EKRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred HHhc----CChhHHHHHHHHHhccCCchHHHH
Confidence 5543 223455555555544444444444
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=4.1e-15 Score=160.87 Aligned_cols=221 Identities=13% Similarity=0.101 Sum_probs=99.1
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 047571 359 KCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAY 438 (681)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 438 (681)
..+++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+.+..
T Consensus 1088 ~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444332 2334444455555555555555444321 2344444445555555555555555544
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHH
Q 047571 439 AVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMA 518 (681)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 518 (681)
..+.. ++....+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|.
T Consensus 1160 Ark~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~ 1225 (1630)
T 1xi4_A 1160 ARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 1225 (1630)
T ss_pred HHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHH
Confidence 44332 22222223444455554444333222 2233333444444445555555555555442 2444
Q ss_pred HHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHH
Q 047571 519 RMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQE 598 (681)
Q Consensus 519 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 598 (681)
.+..++.+.|+++.|.+.+++. .+..+|..+..+|...|++..|...... ...+...+..++..|.+.|.+++
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHH
Confidence 4455555555555555544443 2234444444445555555555444432 11223334455555555555555
Q ss_pred HHHHHHHHHh
Q 047571 599 ALSLFDKMRN 608 (681)
Q Consensus 599 a~~~~~~m~~ 608 (681)
|+.+++....
T Consensus 1299 AI~LlE~aL~ 1308 (1630)
T 1xi4_A 1299 LITMLEAALG 1308 (1630)
T ss_pred HHHHHHHHhc
Confidence 5555555443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=1.7e-16 Score=157.86 Aligned_cols=309 Identities=12% Similarity=0.024 Sum_probs=206.4
Q ss_pred chHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHh
Q 047571 347 LFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVC 423 (681)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 423 (681)
+..+..+...+...|++++|...|+.+.+ .+..++..+...+...|++++|...++++.+.. +-+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 45566777788888888888888877653 256677778888888888888888888877653 22456677777778
Q ss_pred hccCChhHHHHHHHHHHHhCCC--CChhHHHHH------------HHHHHhcCChHHHHHHHhhCCC---CCcchHHHHH
Q 047571 424 SQLKALNHGKEIHAYAVKNQFL--PNVSIITSL------------MIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMI 486 (681)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li 486 (681)
...|++++|...++.+.+.... .+...+..+ ...+...|++++|.+.++++.+ .+...+..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 8888888888888877764310 233344333 4667777888888887777653 3455677777
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHH------------H
Q 047571 487 DSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAA------------E 554 (681)
Q Consensus 487 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~ 554 (681)
..+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++...+.... +...+. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHH
Confidence 77777888888888887777653 445667777777777778888888777777765322 222222 2
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC--CCh-----hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 047571 555 NIKMYGMCGFLECAKLVFDAVPV--KGS-----ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ 627 (681)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~~~~--~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 627 (681)
+...+.+.|++++|...++++.. |+. ..+..+...+...|++++|+..+++..+.. +.+..++..+...+..
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 25556777777777777776555 332 224446666777777777777777777642 3366777777777777
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHh
Q 047571 628 AGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILT 662 (681)
Q Consensus 628 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 662 (681)
.|++++|.+.++.+.+. .|+ ...+..+..+..
T Consensus 319 ~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEH---NENDQQIREGLEKAQR 351 (359)
T ss_dssp TTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc---CCCChHHHHHHHHHHH
Confidence 77777777777766542 343 444555544443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=2.7e-16 Score=156.42 Aligned_cols=295 Identities=9% Similarity=-0.070 Sum_probs=219.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571 378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIM 457 (681)
Q Consensus 378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (681)
+..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3456777788888888888888888887753 2356677777788888888888888888888764 4456778888888
Q ss_pred HHhcCChHHHHHHHhhCCCCCc------chHHHH------------HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHH
Q 047571 458 YSKCGVLDYSLKLFDEMEVRNV------ISWTAM------------IDSCIENGRLDDALGVFRSMQLSKHRPDSVAMAR 519 (681)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~------~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 519 (681)
+...|++++|...++++.+.++ ..+..+ ...+...|++++|++.++++.+.. +.+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 8888888888888888765222 233333 467788888888888888887753 445677778
Q ss_pred HHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHH------------
Q 047571 520 MLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWT------------ 584 (681)
Q Consensus 520 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~------------ 584 (681)
+...+...|+++.|...++.+.+.. +.++..+..+...|...|++++|...++++.. |+ ...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888754 34577888888888888888888888887765 33 22222
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571 585 AIIEAYGYNDLCQEALSLFDKMRNGGFTPNH----FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDI 660 (681)
Q Consensus 585 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 660 (681)
.+...+...|++++|+..++++.+.. +.+. ..+..+..++.+.|++++|.+.++...+. .+.+...+..++.+
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 22556778888888888888888753 2233 23455777888888888888888888764 22246788888888
Q ss_pred HhhcCCHHHHHHHHHhccC
Q 047571 661 LTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 661 ~~~~g~~~~A~~~~~~~~~ 679 (681)
|.+.|++++|.+.+++...
T Consensus 316 ~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 8888888888888887654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=6.1e-16 Score=151.83 Aligned_cols=283 Identities=14% Similarity=0.020 Sum_probs=179.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571 378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIM 457 (681)
Q Consensus 378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (681)
...+..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 3344455555555566666666666555442 1223334444455555566666666666655543 3344555556666
Q ss_pred HHhcC-ChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHH
Q 047571 458 YSKCG-VLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLG 533 (681)
Q Consensus 458 ~~~~g-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 533 (681)
+...| ++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 66666 66666666665543 234455666666666666666666666665543 22234444555666666666666
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC------------CChhhHHHHHHHHHcCCChHHHHH
Q 047571 534 KEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV------------KGSITWTAIIEAYGYNDLCQEALS 601 (681)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~a~~ 601 (681)
...++.+.+.. +.++..+..+...|...|++++|...++++.. ....+|..+...+...|++++|+.
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 66666666543 22456666667777777777777766665443 224678889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH-hhcCCHH
Q 047571 602 LFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDIL-TRFGRIE 668 (681)
Q Consensus 602 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~~~ 668 (681)
.+++..+.. +.+...+..+...+.+.|++++|.+.++++.+ ..| +...+..+..++ ...|+.+
T Consensus 258 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 258 YHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG---LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT---TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc---cCCCchHHHHHHHHHHHHHhCchh
Confidence 999998853 44778899999999999999999999997764 345 477788888888 5666654
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=5.6e-15 Score=153.30 Aligned_cols=379 Identities=13% Similarity=-0.033 Sum_probs=234.5
Q ss_pred CcHHHhHHHHHHHh----cCChHHHHHHHhccCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhH
Q 047571 244 YLILRTSLIDMYFK----CGKIKLARRVFDETGD-RDIVVWGSMIAGFAH----NRLRWEALDCARWMIREGIYPNSVVL 314 (681)
Q Consensus 244 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~ 314 (681)
+...+..+...|.. .+++++|...|+...+ .+...+..|...|.. .++.++|+++|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45555566666666 6777777777765443 355666677777777 777777777777776654 22233
Q ss_pred HHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhhHHHHHHHHH
Q 047571 315 TILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCK----CRDMNSAWRVFYETEER-NEILWTALMSGYV 389 (681)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~ 389 (681)
.. |...|.. .+++++|...|+...+. +...+..+...|.
T Consensus 115 ~~------------------------------------Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~ 158 (490)
T 2xm6_A 115 QN------------------------------------LGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYF 158 (490)
T ss_dssp HH------------------------------------HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH------------------------------------HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22 3333333 45555565555554433 4445555555565
Q ss_pred h----CCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhc----cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-
Q 047571 390 S----NGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQ----LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK- 460 (681)
Q Consensus 390 ~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 460 (681)
. .++.++|++.|++..+.| +...+..+-..+.. .++.++|...++...+.| +...+..+...|..
T Consensus 159 ~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 232 (490)
T 2xm6_A 159 EGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG 232 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 5 566777777777666654 44455555555554 567777777777766654 34455556666654
Q ss_pred ---cCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccc-----
Q 047571 461 ---CGVLDYSLKLFDEMEV-RNVISWTAMIDSCIE----NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQL----- 527 (681)
Q Consensus 461 ---~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----- 527 (681)
.+++++|..+|++..+ .+...+..+...|.. .+++++|+..|++..+.| +...+..+...+...
T Consensus 233 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~ 309 (490)
T 2xm6_A 233 IGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVA 309 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCc
Confidence 6677777777776554 344555566666666 677777777777776654 334444555555544
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHhhhCCC-CChhhHHHHHHHHHc----CCChHHH
Q 047571 528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCG---FLECAKLVFDAVPV-KGSITWTAIIEAYGY----NDLCQEA 599 (681)
Q Consensus 528 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a 599 (681)
++.++|...++...+.+ ++..+..+..+|...| +.++|.+.|++... .+...+..+...|.. .+++++|
T Consensus 310 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 67777777777777654 4456666677776655 67777777776655 456677777777777 7788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhhcCCCC-C-ChhHHHHHHHHHhhcCC--HHHHH
Q 047571 600 LSLFDKMRNGGFTPNHFTFKVLLSICNQ----AGFADEACRIFNVMSRGYKIE-A-LEEHYLIMIDILTRFGR--IEEAH 671 (681)
Q Consensus 600 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~--~~~A~ 671 (681)
+..|++..+.| +...+..|...|.+ .+++++|.++|+...+. +.. | +......+..++.+... .+.|.
T Consensus 387 ~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~ 462 (490)
T 2xm6_A 387 AIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN-DMNLFGTENRNITEKKLTAKQLQQAELLSQ 462 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH-HCCHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCCCcCCHHHHHHHHhcCHhHHHHHHHHHH
Confidence 88888888755 46677777777777 78888888888887765 322 2 23334444444333222 22255
Q ss_pred HHHHhc
Q 047571 672 RFREMS 677 (681)
Q Consensus 672 ~~~~~~ 677 (681)
+++++-
T Consensus 463 ~~~~~~ 468 (490)
T 2xm6_A 463 QYIEKY 468 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 565553
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=8.2e-17 Score=156.15 Aligned_cols=284 Identities=8% Similarity=0.038 Sum_probs=90.4
Q ss_pred cCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhh
Q 047571 258 CGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYV 337 (681)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 337 (681)
.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+...
T Consensus 16 ~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 16 IGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34455555555555333 2555555555555555555555533 134445555555555555555555544444
Q ss_pred hhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHH
Q 047571 338 LKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVA 417 (681)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 417 (681)
.+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 88 rk~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 88 RKK---ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHh---CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 432 22244455556666666666665555532 44445666666666666666666666544 2455
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhH
Q 047571 418 TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDD 497 (681)
Q Consensus 418 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 497 (681)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 5666666666666666655554 245556666666666666666655444433 222223345556666666666
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHhcc--ccchHHHHHHHHHHHHcCCCC------ChhHHHHHHHHHHhcCCHHHHH
Q 047571 498 ALGVFRSMQLSKHRPDSVAMARMLSVSGQ--LKALKLGKEIHGQVLKKDFAS------VPFVAAENIKMYGMCGFLECAK 569 (681)
Q Consensus 498 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~ 569 (681)
|..+++...... +--...|.-+--++++ .++..+..+.|.. +.++++ ....|..++..|...++++.|.
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 666666555332 2222333333333332 2333333333321 111111 3456677777777777777766
Q ss_pred HHhhh
Q 047571 570 LVFDA 574 (681)
Q Consensus 570 ~~~~~ 574 (681)
...-+
T Consensus 303 ~tm~~ 307 (449)
T 1b89_A 303 ITMMN 307 (449)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=4.1e-17 Score=163.06 Aligned_cols=297 Identities=11% Similarity=-0.008 Sum_probs=187.1
Q ss_pred HHhcCCHHHHHH-HHhhcCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCC
Q 047571 357 YCKCRDMNSAWR-VFYETEER-------NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKA 428 (681)
Q Consensus 357 ~~~~~~~~~a~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 428 (681)
+...|++++|.. .+++.... +...+..+...+...|++++|+..++++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344566666666 66544321 23456666667777777777777777766652 2344555566666666666
Q ss_pred hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCc-chHHHHHHHHHhcCChhHHHHHHHHh
Q 047571 429 LNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNV-ISWTAMIDSCIENGRLDDALGVFRSM 505 (681)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m 505 (681)
+++|...++.+.+.. +.+..++..+...|...|++++|.+.++++.. |+. ..+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~-------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AG-------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hh--------
Confidence 666666666666554 33455555555555555555555555555432 111 111100000 00
Q ss_pred HhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-Chh
Q 047571 506 QLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFAS-VPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSI 581 (681)
Q Consensus 506 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~ 581 (681)
...+. ..+. .+..+...|++++|...++.+.+..... +..++..+..+|...|++++|...++++.. | +..
T Consensus 178 ---~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 252 (368)
T 1fch_A 178 ---GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 252 (368)
T ss_dssp ------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ---hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 00000 0011 1222336777888888888777754332 467788888888888888888888887665 3 467
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC--------C-Chh
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIE--------A-LEE 652 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~-~~~ 652 (681)
+|..+...+...|++++|+..++++.+.. +.+...+..+..+|.+.|++++|.+.++.+.+..... + ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 89999999999999999999999998853 4578899999999999999999999999886631111 1 157
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 653 HYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 653 ~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
.|..++.+|.+.|+.++|..++++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHhCChHhHHHhHHH
Confidence 899999999999999999998764
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=8.1e-16 Score=149.20 Aligned_cols=343 Identities=11% Similarity=0.057 Sum_probs=151.8
Q ss_pred cCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHH
Q 047571 154 SCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTH 233 (681)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 233 (681)
+.|++++|.+.++++..| ..|..+..++.+.| ++.+|++.|.+ .+|..+|..++.++...|++++|...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g--~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKG--MVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcC--CHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 456677777777777544 36777777777777 77778777765 357778888888888888999988877
Q ss_pred HHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 047571 234 ALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVV 313 (681)
Q Consensus 234 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 313 (681)
+...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|..+|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----------
Confidence 766664 44567788888899999998888877754 66678888888888888888888888755
Q ss_pred HHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCC
Q 047571 314 LTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGR 393 (681)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 393 (681)
..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|+..|+
T Consensus 149 ----------------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 149 ----------------------------------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE 192 (449)
T ss_dssp ----------------------------------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTC
T ss_pred ----------------------------------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCc
Confidence 124678888888888888888888883 78889999999999999
Q ss_pred hHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--cCChHHHHHHH
Q 047571 394 LEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK--CGVLDYSLKLF 471 (681)
Q Consensus 394 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~ 471 (681)
++.|...... +...+.-...++..|.+.|++++|..+++...... +-....|+-+.-+|++ -++..+.++.|
T Consensus 193 f~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 193 FRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999554443 22233335568888999999999999998877655 5567778877777776 45566666666
Q ss_pred hhCCC--------CCcchHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCCHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 047571 472 DEMEV--------RNVISWTAMIDSCIENGRLDDALGVFRSMQLS-KHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLK 542 (681)
Q Consensus 472 ~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 542 (681)
..-.. .+...|.-+...|...++++.|..+ |.+. ...-+...|..++.--....-+-+|..++- .
T Consensus 267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~ 340 (449)
T 1b89_A 267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---E 340 (449)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---H
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---h
Confidence 54433 2567899999999999999988874 3332 122234444444433222222223333322 1
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHhhh
Q 047571 543 KDFASVPFVAAENIKMYGMCGFLECAKLVFDA 574 (681)
Q Consensus 543 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 574 (681)
-.|...+.|+.++...=+...+..+|++
T Consensus 341 ----~~p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 341 ----FKPLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp ----HCGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred ----cCHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 1233445555555444455444444443
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=7.4e-16 Score=151.22 Aligned_cols=287 Identities=11% Similarity=-0.043 Sum_probs=223.0
Q ss_pred CCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHH
Q 047571 342 RYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVAT 418 (681)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 418 (681)
+.+.+...+..+...+...|++++|..+|+.+.+. +...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 34555666677788888888888888888876542 45567777788888889999999888888753 235566777
Q ss_pred HHHHhhccC-ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCC
Q 047571 419 VIPVCSQLK-ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGR 494 (681)
Q Consensus 419 ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 494 (681)
+...+...| ++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+ | +...+..+...|...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 777888888 8888998888887754 44567788888888899999999988888764 3 45667778888889999
Q ss_pred hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcC--------CCCChhHHHHHHHHHHhcCCHH
Q 047571 495 LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKD--------FASVPFVAAENIKMYGMCGFLE 566 (681)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 566 (681)
+++|.+.+++..+.. +.+...+..+...+...|++++|...++.+.+.. .+....++..+..+|...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999888764 4456778888888889999999999998887642 1334678889999999999999
Q ss_pred HHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCHH
Q 047571 567 CAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC-NQAGFAD 632 (681)
Q Consensus 567 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~ 632 (681)
+|...++++.. .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999988765 347788999999999999999999999998853 34778888888887 4556643
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=2.6e-14 Score=149.87 Aligned_cols=411 Identities=10% Similarity=0.010 Sum_probs=230.9
Q ss_pred ChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHHHH
Q 047571 209 NVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD--RDIVVWGSMIAGF 286 (681)
Q Consensus 209 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~ 286 (681)
|...|..++. +.+.|++++|..+++.+.+.. +.+...|..++..+.+.|++++|.++|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4557777776 366788888888888887652 44566777888888888888888888887665 5555666665432
Q ss_pred -HhcCChHHHHH----HHHHHHHc-CCCCC-hhhHHHHHHHHhh---------hhhhcccchhhhhhhhccCCCCCchHH
Q 047571 287 -AHNRLRWEALD----CARWMIRE-GIYPN-SVVLTILLPVIGE---------AWARKLGQEVHAYVLKNERYSEELFVR 350 (681)
Q Consensus 287 -~~~~~~~~a~~----~~~~m~~~-g~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 350 (681)
...|+.++|.+ +|+..... |..|+ ...|...+..... .|+.+.|..+|+..++. ........|
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~ 168 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLW 168 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHH
Confidence 34566666554 55555442 54443 3344444443332 45566666666655542 111111122
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH------HcC---cCCCH--------
Q 047571 351 SSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQ------QEG---FRPDV-------- 413 (681)
Q Consensus 351 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~------~~g---~~p~~-------- 413 (681)
..........|. ..+..++. .+.+++..|..++..+. +.. +.|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 211111000000 00111110 02234555665555432 111 23331
Q ss_pred HHHHHHHHHhhc----cCCh----hHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------cCChH-------HHHHHH
Q 047571 414 VTVATVIPVCSQ----LKAL----NHGKEIHAYAVKNQFLPNVSIITSLMIMYSK-------CGVLD-------YSLKLF 471 (681)
Q Consensus 414 ~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~ 471 (681)
..|...+..... .++. ..+..+|+.+.... +.+...|..++..+.+ .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 233333322211 1222 35667777777653 4466677777777665 67776 788888
Q ss_pred hhCCC---C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH--HHHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571 472 DEMEV---R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDS--VAMARMLSVSGQLKALKLGKEIHGQVLKKDF 545 (681)
Q Consensus 472 ~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 545 (681)
++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|+.+.|..+|+...+...
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 87763 3 3556777777788888888888888888774 4432 3666667777777778888888877776421
Q ss_pred CCChhHHHHHHHH-HHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCCC--HHHH
Q 047571 546 ASVPFVAAENIKM-YGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGG-FTPN--HFTF 618 (681)
Q Consensus 546 ~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~~ 618 (681)
.+...+...+.. +...|+.++|..+|+.... | +...|..++..+.+.|+.++|..+|++....+ ..|+ ...|
T Consensus 388 -~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 388 -TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp -CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred -CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 122222222222 2345666666666665554 3 35566666666666667777777776666642 1221 3355
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 619 KVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
...+......|+.+.+..+.+++.+.
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55566666666666666666666553
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=1e-13 Score=143.84 Aligned_cols=346 Identities=12% Similarity=-0.008 Sum_probs=278.8
Q ss_pred CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchH
Q 047571 274 RDIVVWGSMIAGFAH----NRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFV 349 (681)
Q Consensus 274 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 349 (681)
.+...+..+...|.. .+++++|+.+|++..+.| +...
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a------------------------------------ 77 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPA------------------------------------ 77 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH------------------------------------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHH------------------------------------
Confidence 466677777777777 788899999988887653 2222
Q ss_pred HhHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCcCCCHHHHHHHH
Q 047571 350 RSSLVDMYCK----CRDMNSAWRVFYETEER-NEILWTALMSGYVS----NGRLEQALRSIAWMQQEGFRPDVVTVATVI 420 (681)
Q Consensus 350 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 420 (681)
+..|...|.. .++.++|...|+...+. +...+..|...|.. .+++++|+..|++..+.| +...+..+-
T Consensus 78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg 154 (490)
T 2xm6_A 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMG 154 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 2344555555 67888888888876654 66778888888888 889999999999998876 455666666
Q ss_pred HHhhc----cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CCcchHHHHHHHHHh
Q 047571 421 PVCSQ----LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK----CGVLDYSLKLFDEMEV-RNVISWTAMIDSCIE 491 (681)
Q Consensus 421 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~ 491 (681)
..+.. .++.++|.+.|+...+.| +...+..+...|.. .++.++|.+.|++..+ .+...+..+...|..
T Consensus 155 ~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 231 (490)
T 2xm6_A 155 DAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYF 231 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 66665 789999999999998875 67788888888887 8999999999998765 466677888888876
Q ss_pred ----cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc----ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-
Q 047571 492 ----NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ----LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC- 562 (681)
Q Consensus 492 ----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 562 (681)
.+++++|.+.|++..+.| +...+..+...+.. .++.++|...++...+.+ ++..+..+..+|...
T Consensus 232 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~ 305 (490)
T 2xm6_A 232 GIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGA 305 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCB
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Confidence 789999999999998865 34555556556655 789999999999998764 567788888999887
Q ss_pred ----CCHHHHHHHhhhCCC-CChhhHHHHHHHHHcCC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCC
Q 047571 563 ----GFLECAKLVFDAVPV-KGSITWTAIIEAYGYND---LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ----AGF 630 (681)
Q Consensus 563 ----g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~ 630 (681)
++.++|...+++..+ .+...+..+...|...| +.++|+++|++..+.| +...+..|...|.. .++
T Consensus 306 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 306 EGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 999999999998777 45677888888888766 8899999999999864 67788889999988 899
Q ss_pred HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhc
Q 047571 631 ADEACRIFNVMSRGYKIEALEEHYLIMIDILTR----FGRIEEAHRFREMS 677 (681)
Q Consensus 631 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 677 (681)
+++|.++|++..+. + +...+..|..+|.+ .|+.++|.+++++.
T Consensus 383 ~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999999998874 3 45788889999998 89999999999874
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=4.3e-16 Score=155.36 Aligned_cols=264 Identities=12% Similarity=-0.019 Sum_probs=175.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571 378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIM 457 (681)
Q Consensus 378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (681)
...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+.. +.+..++..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~---- 138 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMA---- 138 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH----
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH----
Confidence 3446666666666666666666666666542 2244455555555555566666665555555543 223444444
Q ss_pred HHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-----------HHHHHHHHHHhcc
Q 047571 458 YSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPD-----------SVAMARMLSVSGQ 526 (681)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~ 526 (681)
+..+|...|++++|+..++++.+.. |+ ...+..+...+..
T Consensus 139 ---------------------------l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 139 ---------------------------LAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVD 189 (365)
T ss_dssp ---------------------------HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------C
T ss_pred ---------------------------HHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhh
Confidence 4444555555555555555544321 11 1223344566777
Q ss_pred ccchHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHH
Q 047571 527 LKALKLGKEIHGQVLKKDFA-SVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSL 602 (681)
Q Consensus 527 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 602 (681)
.|++++|..+++++.+.... .++.++..+...|...|++++|...++++.. .+..+|..+...|...|++++|+..
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777888777777776432 2577788888888888888888888887665 3477899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC----------CCChhHHHHHHHHHhhcCCHHHHHH
Q 047571 603 FDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKI----------EALEEHYLIMIDILTRFGRIEEAHR 672 (681)
Q Consensus 603 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~ 672 (681)
|+++.+.. +.+..++..+..+|.+.|++++|.+.++++.+...- ..+...|..+..++...|+.+.|.+
T Consensus 270 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 270 YTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999853 446889999999999999999999999988663111 0136789999999999999999999
Q ss_pred HHHhc
Q 047571 673 FREMS 677 (681)
Q Consensus 673 ~~~~~ 677 (681)
+.++-
T Consensus 349 ~~~~~ 353 (365)
T 4eqf_A 349 ANLGD 353 (365)
T ss_dssp HHTTC
T ss_pred HHHhh
Confidence 87763
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=5.3e-14 Score=147.56 Aligned_cols=414 Identities=8% Similarity=0.048 Sum_probs=281.1
Q ss_pred CCCcHHHhHHHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 047571 242 VDYLILRTSLIDMYFKCGKIKLARRVFDETGD--R-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILL 318 (681)
Q Consensus 242 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 318 (681)
+-+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|++..... |+...|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 446778888888 4789999999999999876 3 56789999999999999999999999998753 6766666655
Q ss_pred HHH-hhhhhhcccch----hhhhhhhccCCCC-CchHHhHHHHHHHh---------cCCHHHHHHHHhhcCCCChhhHHH
Q 047571 319 PVI-GEAWARKLGQE----VHAYVLKNERYSE-ELFVRSSLVDMYCK---------CRDMNSAWRVFYETEERNEILWTA 383 (681)
Q Consensus 319 ~~~-~~~~~~~~a~~----~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~ 383 (681)
... ...|+.+.|.+ +|+......|..| +...|...+....+ .|+++.|..+|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 433 34566666655 6666665545443 45566666665544 567777777777765421111111
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH------hC---CCCC-------
Q 047571 384 LMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVK------NQ---FLPN------- 447 (681)
Q Consensus 384 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~---~~~~------- 447 (681)
+...|.. ++... +..+...++. ...+++..|..++..... .. ++|+
T Consensus 167 ~~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 167 LWRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 1111111 00000 0011111111 123456666666655321 11 2333
Q ss_pred -hhHHHHHHHHHHhc----CCh----HHHHHHHhhCCC--C-CcchHHHHHHHHHh-------cCChh-------HHHHH
Q 047571 448 -VSIITSLMIMYSKC----GVL----DYSLKLFDEMEV--R-NVISWTAMIDSCIE-------NGRLD-------DALGV 501 (681)
Q Consensus 448 -~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~--~-~~~~~~~li~~~~~-------~~~~~-------~A~~~ 501 (681)
...|...+...... ++. +++..+|++... | +...|..++..+.+ .|+++ +|..+
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 23444444332221 232 366777877765 3 56678777777775 79987 89999
Q ss_pred HHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC
Q 047571 502 FRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG 579 (681)
Q Consensus 502 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~ 579 (681)
|++..+.-.+-+...+..+...+...|++++|..+++.+++........+|..++..+.+.|++++|..+|++... |+
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 388 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 9999863234457788888888999999999999999999853221135888899999999999999999998876 22
Q ss_pred -hhhHHHHHHH-HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC--hhHHH
Q 047571 580 -SITWTAIIEA-YGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL--EEHYL 655 (681)
Q Consensus 580 -~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ 655 (681)
...|...+.. +...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++........|+ ...|.
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~ 467 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 467 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHH
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHH
Confidence 2233322222 335899999999999998852 447889999999999999999999999999875334443 45788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhc
Q 047571 656 IMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 656 ~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
..++...+.|+.+.+.++.+++
T Consensus 468 ~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 468 RFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 8889889999999999988765
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=3e-15 Score=146.64 Aligned_cols=273 Identities=7% Similarity=-0.048 Sum_probs=189.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571 378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIM 457 (681)
Q Consensus 378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (681)
...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3456667777778888888888888777653 2255566666667777777777777777776653 3345555556666
Q ss_pred HHhcCChHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHH-HH-HhccccchHH
Q 047571 458 YSKCGVLDYSLKLFDEMEV--RN-VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARM-LS-VSGQLKALKL 532 (681)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~-~~~~~~~~~~ 532 (681)
+...|++++|.+.++++.+ |+ ...+..+... .|+......+ .. .+...|++++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 6666666666666555432 11 1111111000 0111111111 12 3667788888
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571 533 GKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 533 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 609 (681)
|...++.+.+.. +.+...+..+...|...|++++|...++++.. | +...|..+...+...|++++|+..++++.+.
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888888887764 23577788888888889999999888887765 3 4678899999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-----------ChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 610 GFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-----------LEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 610 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
. +.+..++..+...+...|++++|.+.++++.+. .... +...+..+..++.+.|+.++|.+++++.
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 447889999999999999999999999988764 2221 4678999999999999999999988754
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=1.9e-15 Score=150.91 Aligned_cols=301 Identities=8% Similarity=-0.123 Sum_probs=205.2
Q ss_pred HHhhhhhhcccch-hhhhhhhccCCCC--CchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCC
Q 047571 320 VIGEAWARKLGQE-VHAYVLKNERYSE--ELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGR 393 (681)
Q Consensus 320 ~~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~ 393 (681)
++...++++.|.. .+....+.....| +...+..+...+.+.|++++|...|+.+.+ .+..+|..+..++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5667788999988 8877665422222 356678899999999999999999998764 367789999999999999
Q ss_pred hHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 047571 394 LEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDE 473 (681)
Q Consensus 394 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 473 (681)
+++|+..++++.+.. +.+..++..+...+...|++++|...++.+...... +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 999999999998874 346778888999999999999999999999986522 22222211000 00
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHH
Q 047571 474 MEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRP-DSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVA 552 (681)
Q Consensus 474 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 552 (681)
...+. ..+..+. .+...|++++|+..++++.+..... +..++..+...+...|++++|...++++.+.. +.++..+
T Consensus 178 ~~~~~-~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 178 GAGLG-PSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp ---------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhccc-HHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 00000 0111112 2225666777777777766643111 35666666677777777777777777766653 2346677
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-----------HHHH
Q 047571 553 AENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN-----------HFTF 618 (681)
Q Consensus 553 ~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~~~ 618 (681)
..+..+|...|++++|...++++.. | +...|..+...|...|++++|...|+++.+.. +.+ ..+|
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHH
Confidence 7777788888888888888777655 3 46678888999999999999999999887642 112 6889
Q ss_pred HHHHHHHhccCCHHHHHHHHHH
Q 047571 619 KVLLSICNQAGFADEACRIFNV 640 (681)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~ 640 (681)
..+..++...|++++|..++..
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999999988763
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=8.2e-17 Score=168.59 Aligned_cols=154 Identities=13% Similarity=0.103 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCCcChhhHHHHHHHHH---HcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHH
Q 047571 176 WNALLRGAVIAGKKRYRGVLFNYMKMR---ELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLI 252 (681)
Q Consensus 176 ~~~ll~~~~~~~~~~~~~a~~~~~~m~---~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 252 (681)
||++|.+|++.| ++++|..+|.+|. ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||++|
T Consensus 130 ynaLIdglcK~G--~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 130 LLAFFKCCLLTD--QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHT--CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhCC--CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 444444444444 4444444444433 33566666666666666666666666666666666666666666655555
Q ss_pred HHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccch
Q 047571 253 DMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQE 332 (681)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 332 (681)
+++|+.|+. .++|.++|++|.+.|+.||..||+.++....+.+-++.+.+
T Consensus 208 ~glcK~G~~------------------------------~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 208 QCMGRQDQD------------------------------AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp HHHHHHTCC------------------------------HHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred HHHHhCCCc------------------------------HHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 555554442 23444555558888888888888877766666555554444
Q ss_pred hhhhhhhccCCCCCchHHhHHHHHHHhcC
Q 047571 333 VHAYVLKNERYSEELFVRSSLVDMYCKCR 361 (681)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (681)
+.....-....++...+...|.+.|.+.+
T Consensus 258 v~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp GCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred hCcccCCCCCCcccccchHHHHHHHccCC
Confidence 43222111111122444445556666544
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=3.1e-15 Score=142.66 Aligned_cols=269 Identities=10% Similarity=0.035 Sum_probs=198.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCcCCCH--HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047571 385 MSGYVSNGRLEQALRSIAWMQQEGFRPDV--VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG 462 (681)
Q Consensus 385 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (681)
++.....|++..|+..++..... .|+. .....+..++...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567789999999888765443 3433 3445667888899999888876644 23567778888888888999
Q ss_pred ChHHHHHHHhhCC----CC-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHH
Q 047571 463 VLDYSLKLFDEME----VR-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIH 537 (681)
Q Consensus 463 ~~~~a~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 537 (681)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|+.++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998763 24 344566667888899999999998887 466778888888889999999999999
Q ss_pred HHHHHcCCCCChh---HHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047571 538 GQVLKKDFASVPF---VAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGF 611 (681)
Q Consensus 538 ~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 611 (681)
+.+.+.. |+.. ....++..+...|++++|..+|+++.. .+...|+.+..++...|++++|.+.|++..+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9988864 3322 112334555556889999999888766 346778888888999999999999999988753
Q ss_pred CCCHHHHHHHHHHHhccCCHHH-HHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571 612 TPNHFTFKVLLSICNQAGFADE-ACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFR 674 (681)
Q Consensus 612 ~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 674 (681)
+-++.++..++..+...|+.++ +.++++++.+. .|+.. .+.+...+.+.+++|..-+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~---~P~~~---~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA---HRSHP---FIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCH---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---CCCCh---HHHHHHHHHHHHHHHHHHc
Confidence 4478888888888888888876 56788877654 44422 2335567777777776544
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=3.7e-15 Score=148.54 Aligned_cols=272 Identities=7% Similarity=-0.136 Sum_probs=185.3
Q ss_pred CCchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHH
Q 047571 345 EELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIP 421 (681)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 421 (681)
.+...+..+...+.+.|++++|...|+.+.+ .+..+|..+...+...|++++|+..|++..+.. +.+...+..+..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455688899999999999999999998764 367889999999999999999999999998863 335778889999
Q ss_pred HhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 047571 422 VCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGV 501 (681)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 501 (681)
.+...|++++|...++.+.+.... +...+..+. .....+..+...+...|++++|+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH-HHCC----------------------------------------CCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCcc-chHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999999999998875411 111111110 0112233334445555555555555
Q ss_pred HHHhHhCCCC-CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C
Q 047571 502 FRSMQLSKHR-PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K 578 (681)
Q Consensus 502 ~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~ 578 (681)
++++.+.... ++..++..+...+...|++++|...++++.+.. +.++.++..+..+|...|++++|...++++.. |
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 5555543211 134555555555555566666666665555543 22455666677777777777777777766554 3
Q ss_pred -ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047571 579 -GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT-----------PNHFTFKVLLSICNQAGFADEACRIFNV 640 (681)
Q Consensus 579 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (681)
+..+|..+...|...|++++|+..|+++.+.... .+...|..+..++...|+.+.+.++.+.
T Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 3667888888899999999999999988764211 1367899999999999999999888764
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=5.9e-14 Score=133.80 Aligned_cols=268 Identities=11% Similarity=0.014 Sum_probs=211.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCCh
Q 047571 354 VDMYCKCRDMNSAWRVFYETEERNE----ILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKAL 429 (681)
Q Consensus 354 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 429 (681)
++-....|++..|+..++.....+. .....+.++|...|+++.|+..++. .-.|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 3445667999999999988766432 3446678999999999999986654 2456777888888899999999
Q ss_pred hHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 047571 430 NHGKEIHAYAVKNQFLP-NVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLS 508 (681)
Q Consensus 430 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 508 (681)
+.|.+.++.+...+..| +...+..+..++...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.|+++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 99999999999877545 555667777899999999999999998 456778889999999999999999999999986
Q ss_pred CCCCCHHHH---HHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-Chhh
Q 047571 509 KHRPDSVAM---ARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSIT 582 (681)
Q Consensus 509 g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~ 582 (681)
. |+.... ...+..+...|++++|..+++++.+.. +.++..++.+..++.+.|++++|...++++.. | +..+
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4 554321 123344445689999999999999873 55788999999999999999999999998777 4 4778
Q ss_pred HHHHHHHHHcCCChHH-HHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 047571 583 WTAIIEAYGYNDLCQE-ALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACR 636 (681)
Q Consensus 583 ~~~l~~~~~~~~~~~~-a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 636 (681)
+..++..+...|+.++ +.++++++.+. .| ++.+. +...+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHHH----HHHHHHHHHHHHHH
Confidence 9999999999999876 67899999984 56 44433 23344455555444
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=9.5e-17 Score=168.12 Aligned_cols=128 Identities=11% Similarity=0.121 Sum_probs=112.9
Q ss_pred CCCCchHHhHHHHHHHhcCCHHHHHHHHhhcC-------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHH
Q 047571 343 YSEELFVRSSLVDMYCKCRDMNSAWRVFYETE-------ERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVT 415 (681)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 415 (681)
...-..+|+++|++||+.|++++|.++|.+|. .||+++||+||++||+.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33345689999999999999999999997754 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCh-hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 047571 416 VATVIPVCSQLKAL-NHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKL 470 (681)
Q Consensus 416 ~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 470 (681)
|+++|.++++.|+. +.|.++|++|.+.|+.||..+|++++.++.+.+-++.+.++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999999985 78999999999999999999999999877765444444443
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=1.3e-14 Score=142.15 Aligned_cols=275 Identities=7% Similarity=-0.099 Sum_probs=188.1
Q ss_pred CchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHH
Q 047571 346 ELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPV 422 (681)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 422 (681)
+...+..+...+...|++++|..+|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 445567788899999999999999998764 367788999999999999999999999998863 3467788888899
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHH--HHHhcCChhHHHH
Q 047571 423 CSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMID--SCIENGRLDDALG 500 (681)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~ 500 (681)
+...|++++|...++.+.+.. +.+...+..+...+ ++......+.. .+...|++++|.+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 999999999999999998864 22233333221100 00001111111 1334455555555
Q ss_pred HHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C
Q 047571 501 VFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K 578 (681)
Q Consensus 501 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~ 578 (681)
.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.++..+..+...|...|++++|...++++.. |
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 555555432 2244455555555555566666666555555543 22355666677777777777777777776554 3
Q ss_pred -ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571 579 -GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-----------NHFTFKVLLSICNQAGFADEACRIFNVMS 642 (681)
Q Consensus 579 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (681)
+..+|..+...+...|++++|.+.++++.+..... +...+..+..++.+.|++++|.++++...
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 36678888999999999999999999988753111 47789999999999999999999987543
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=4.5e-13 Score=138.61 Aligned_cols=371 Identities=10% Similarity=-0.024 Sum_probs=179.9
Q ss_pred cHHHhHHHHHHHhcCChHHHHHHHhccCC------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCC
Q 047571 245 LILRTSLIDMYFKCGKIKLARRVFDETGD------------RDIVVWGSMIAGFAHNRLRWEALDCARWMIREG---IYP 309 (681)
Q Consensus 245 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p 309 (681)
...|+.|...+...|++++|++.|++..+ ....+|+.+...|...|++++|...+++..+.. ..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 45566666666666777766666654321 134567777777777888888877777665420 000
Q ss_pred ChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHh--cCCHHHHHHHHhhcCC--C-ChhhHHHH
Q 047571 310 NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCK--CRDMNSAWRVFYETEE--R-NEILWTAL 384 (681)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~--~-~~~~~~~l 384 (681)
. ......++..+..++.+ .+++++|...|++..+ | +...+..+
T Consensus 131 ~--------------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~ 178 (472)
T 4g1t_A 131 Y--------------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGL 178 (472)
T ss_dssp S--------------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred c--------------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 0 00011122222222222 2345555555554432 2 23333333
Q ss_pred HHH---HHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHh----hccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571 385 MSG---YVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVC----SQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIM 457 (681)
Q Consensus 385 i~~---~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (681)
..+ +...++.++|++.+++..+.. +.+...+..+...+ ...++.++|.++++...... +.+..++..+...
T Consensus 179 ~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 179 AIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHH
Confidence 322 334455566666666655532 11223333222222 23345666666666666544 3445556666666
Q ss_pred HHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHH
Q 047571 458 YSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGK 534 (681)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 534 (681)
|.+.|++++|...+++..+ | +..++..+..+|...+.... ... . ..........+..+.|.
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~ 320 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAV 320 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHH
Confidence 6666666666666666543 2 22334444433322111000 000 0 00000011123356667
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChh----hHHHHHH-HHHcCCChHHHHHHHHHHH
Q 047571 535 EIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSI----TWTAIIE-AYGYNDLCQEALSLFDKMR 607 (681)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~~-~~~~~~~~~~a~~~~~~m~ 607 (681)
..++...+.+ +.+...+..+...|...|++++|...|++... ++.. .+..+.. .+...|+.++|+..|++..
T Consensus 321 ~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 321 AHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777666654 23455667777788888888888888776544 2211 2223322 2345778888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 608 NGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 608 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
+ +.|+....... ...+.++++...+. .+.+..+|..|+.+|...|++++|++.+++...
T Consensus 400 ~--i~~~~~~~~~~---------~~~l~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 400 K--INQKSREKEKM---------KDKLQKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp H--SCCCCHHHHHH---------HHHHHHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred h--cCcccHHHHHH---------HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7 45543322222 23334444444332 122467788888888888888888888776543
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=1.9e-12 Score=133.82 Aligned_cols=80 Identities=15% Similarity=0.018 Sum_probs=57.2
Q ss_pred CHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHhccCCHHHHHHH
Q 047571 564 FLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH--FTFKVLLS-ICNQAGFADEACRI 637 (681)
Q Consensus 564 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~-~~~~~g~~~~A~~~ 637 (681)
..++|...+++... .+..++..+...|...|++++|++.|++..+....|.. ..+..+.. .....|++++|++.
T Consensus 315 ~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 35667777766554 34667888999999999999999999999986433321 12333333 34577999999999
Q ss_pred HHHhhh
Q 047571 638 FNVMSR 643 (681)
Q Consensus 638 ~~~~~~ 643 (681)
+++..+
T Consensus 395 y~kal~ 400 (472)
T 4g1t_A 395 FIEGVK 400 (472)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 997765
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=4.1e-13 Score=122.10 Aligned_cols=192 Identities=15% Similarity=0.021 Sum_probs=121.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 047571 446 PNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLS 522 (681)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 522 (681)
++...+..+...+.+.|++++|...|++..+ | +...+..+..++.+.|++++|+..+++..+.. |+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~--------- 71 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART--PR--------- 71 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------
Confidence 4445555555566666666666666655543 2 33455555555666666666666666555532 22
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-----------CCHHHHHHHhhhCCC--C-ChhhHHHHHH
Q 047571 523 VSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC-----------GFLECAKLVFDAVPV--K-GSITWTAIIE 588 (681)
Q Consensus 523 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~--~-~~~~~~~l~~ 588 (681)
++..+..+..+|... |++++|...+++... | +...|..+..
T Consensus 72 -------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 72 -------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 233444444444444 666666666666554 3 3567888888
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCH
Q 047571 589 AYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRI 667 (681)
Q Consensus 589 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 667 (681)
.+...|++++|+..|++..+.. .+...+..+..++...|++++|++.++...+. .| +...+..+..++.+.|++
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC----
T ss_pred HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCH
Confidence 9999999999999999999876 78888999999999999999999999988764 34 467888999999999999
Q ss_pred HHHHHHHHhcc
Q 047571 668 EEAHRFREMSS 678 (681)
Q Consensus 668 ~~A~~~~~~~~ 678 (681)
++|++.+++..
T Consensus 202 ~~A~~~~~~~~ 212 (217)
T 2pl2_A 202 EEAARAAALEH 212 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=6.6e-12 Score=127.95 Aligned_cols=376 Identities=11% Similarity=0.008 Sum_probs=179.4
Q ss_pred HHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCCh---HHHHHHHhccCCCChhhHHHHHHHHHhcC--
Q 047571 216 VIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKI---KLARRVFDETGDRDIVVWGSMIAGFAHNR-- 290 (681)
Q Consensus 216 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~-- 290 (681)
+...+.+.|++++|.+.|+...+.| +...+..|...|...|+. ++|.+.|++..+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4556667888999999999888876 334444556666677777 89999998877767777777777566555
Q ss_pred ---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcC----CH
Q 047571 291 ---LRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCR----DM 363 (681)
Q Consensus 291 ---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~ 363 (681)
++++|+.+|++..+.|.. ..+..+...+...+..+.+...+..+.+. .-..+......+...|...+ +.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a-~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQW-QAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHH-HHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 778999999998886633 25555666666655544444444443332 11112334444555555554 33
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhcc----CChhHHHHHH
Q 047571 364 NSAWRVFYETEERNEILWTALMSGYVSNG---RLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQL----KALNHGKEIH 436 (681)
Q Consensus 364 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~~~~~a~~~~ 436 (681)
+.+..+++.....+...+..+...|...| +.++|+..|++..+.|. ++...+..+-..+... ++.++|...|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 33444444444445555555555555555 55556666555555542 2222222233333222 3444555555
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHH-H--HhcCChhHHHHHHHHhHhCCCCCC
Q 047571 437 AYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDS-C--IENGRLDDALGVFRSMQLSKHRPD 513 (681)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g~~p~ 513 (681)
+... .| +. ..+..+... + ...+++++|++.|++..+.| +
T Consensus 241 ~~aa-~g---~~-------------------------------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~ 282 (452)
T 3e4b_A 241 EKIA-PG---YP-------------------------------ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q 282 (452)
T ss_dssp HHHG-GG---ST-------------------------------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred HHHc-CC---CH-------------------------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence 4443 21 22 233333333 1 23445555555555555444 2
Q ss_pred HHHHHHHHHHhcccc-----chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHhhhCCCC-ChhhH
Q 047571 514 SVAMARMLSVSGQLK-----ALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM----CGFLECAKLVFDAVPVK-GSITW 583 (681)
Q Consensus 514 ~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~ 583 (681)
......+-..|. .| +.++|...|++.. .-++.....+..+|.. ..+.++|...|++...+ +....
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~ 357 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSAD 357 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHH
Confidence 233333333332 22 4455555554443 2234444444444444 23556666666555442 34455
Q ss_pred HHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 584 TAIIEAYGY----NDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 584 ~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
..|...|.. ..+.++|..+|+...+.| .++.......+......++..+|.++.++..+
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 555555553 346777777777777766 33333322223223333455566666655443
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.4e-12 Score=122.66 Aligned_cols=224 Identities=8% Similarity=-0.056 Sum_probs=138.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCC--CChhHHHHHHHH
Q 047571 380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFL--PNVSIITSLMIM 457 (681)
Q Consensus 380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 457 (681)
.|..+...+...|++++|+..+++..+.. .+...+..+..++...|++++|...++.+.+.... ++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 45555566666666666666666665554 45555555555555556666665555554442210 0100
Q ss_pred HHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHH
Q 047571 458 YSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIH 537 (681)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 537 (681)
.....|..+...+...|++++|+..|++.... .|+. ..+...|++++|...+
T Consensus 77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence 00234555555566666666666666666553 3332 2344456666666666
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 047571 538 GQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN 614 (681)
Q Consensus 538 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 614 (681)
+.+.+.. +.+...+..+...+...|++++|...++++.. .+...|..+...+...|++++|+..+++..+.. +.+
T Consensus 129 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~ 206 (258)
T 3uq3_A 129 EAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNF 206 (258)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHH
Confidence 6666532 12345566667777777777777777776654 335677778888888888888888888888753 446
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 615 HFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
...+..+..++.+.|++++|.+.++...+
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77788888888888888888888887765
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=3.5e-12 Score=121.02 Aligned_cols=225 Identities=10% Similarity=-0.064 Sum_probs=164.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--HHHHHHHHHHhcc
Q 047571 452 TSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPD--SVAMARMLSVSGQ 526 (681)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~ 526 (681)
......+...|++++|...|+++.+ | +...+..+..+|...|++++|+..+++..+.+-.|+ ...+..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3445556666677777776666543 2 344666677777777777777777777776332222 2346667777777
Q ss_pred ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHH
Q 047571 527 LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLF 603 (681)
Q Consensus 527 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~ 603 (681)
.|++++|...++...+.. +.+..++..+..+|...|++++|...+++... | +...|..+...+...+++++|++.+
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888777777654 23567888999999999999999999998887 3 3566777773444456999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHhhhcCCCCCC------hhHHHHHHHHHhhcCCHHHHHHHH
Q 047571 604 DKMRNGGFTPNHFTFKVLLSICNQAGF---ADEACRIFNVMSRGYKIEAL------EEHYLIMIDILTRFGRIEEAHRFR 674 (681)
Q Consensus 604 ~~m~~~g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 674 (681)
+++.+.. +.+...+..+..++...|+ +++|...++++.+.....|+ ...|..+..+|.+.|++++|.+.+
T Consensus 166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999853 4467888888888888888 88899999888765333343 257888999999999999999999
Q ss_pred Hhcc
Q 047571 675 EMSS 678 (681)
Q Consensus 675 ~~~~ 678 (681)
++..
T Consensus 245 ~~al 248 (272)
T 3u4t_A 245 KNIL 248 (272)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=3e-11 Score=123.09 Aligned_cols=385 Identities=11% Similarity=0.019 Sum_probs=201.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHhCCCCchhHHHHHHHHhhc
Q 047571 78 DIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSL---VEGRLIHTHIRINGLENNGFLRTKLVKMYTS 154 (681)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (681)
+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|..+|+...+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555566666666666666665554 233334444444445554 5555555555432 22333333332222
Q ss_pred CCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHH
Q 047571 155 CGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHA 234 (681)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 234 (681)
.+... ..+.++|+..|++..+.|. ...+..+...|...+..+.+.+.++
T Consensus 82 ~~~~~----------------------------~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~ 130 (452)
T 3e4b_A 82 KPGAT----------------------------EAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQ 130 (452)
T ss_dssp C--CC----------------------------HHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHH
T ss_pred CCCCC----------------------------CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 22000 0155666666666666542 2255555666655555444444444
Q ss_pred HHHHhCCCCCcHHHhHHHHHHHhcCC----hHHHHHHHhccCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCC
Q 047571 235 LLIKNGFVDYLILRTSLIDMYFKCGK----IKLARRVFDETGDRDIVVWGSMIAGFAHNR---LRWEALDCARWMIREGI 307 (681)
Q Consensus 235 ~~~~~g~~~~~~~~~~li~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~ 307 (681)
.+.+..-..+......|...|...+. .+.+..+++.....+...+..+...|...| +.++|++.|++..+.|.
T Consensus 131 ~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~ 210 (452)
T 3e4b_A 131 QISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT 210 (452)
T ss_dssp HHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC
Confidence 33332212234555667777777774 455566666666777778888999999999 88899999988887763
Q ss_pred CCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHH
Q 047571 308 YPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSG 387 (681)
Q Consensus 308 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 387 (681)
. +...+..+...+... ....++.++|..+|+.....+...+..+...
T Consensus 211 ~-~a~~~~~Lg~~y~~g--------------------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~ 257 (452)
T 3e4b_A 211 V-TAQRVDSVARVLGDA--------------------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQL 257 (452)
T ss_dssp S-CHHHHHHHHHHHTCG--------------------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHhCC--------------------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 222222222222111 0112567777777776662255566666655
Q ss_pred -H--HhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccC-----ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 047571 388 -Y--VSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLK-----ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYS 459 (681)
Q Consensus 388 -~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (681)
+ ...++.++|+..|++..+.| +...+..+-..+. .| +.++|...|+... +-+...+..|...|.
T Consensus 258 ~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 258 LYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYR 329 (452)
T ss_dssp HHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHH
Confidence 3 35677788888888777765 4444444444444 33 7777777777665 234555555665555
Q ss_pred h----cCChHHHHHHHhhCCCC-CcchHHHHHHHHHh----cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccch
Q 047571 460 K----CGVLDYSLKLFDEMEVR-NVISWTAMIDSCIE----NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKAL 530 (681)
Q Consensus 460 ~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 530 (681)
. ..++++|...|+...++ +......|...|.. ..+.++|...|+...+.|. ++.......+......++.
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~ 408 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQR 408 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHH
Confidence 5 33777777777766553 44455555555553 3467777777777777663 2233233333333444556
Q ss_pred HHHHHHHHHHHH
Q 047571 531 KLGKEIHGQVLK 542 (681)
Q Consensus 531 ~~a~~~~~~~~~ 542 (681)
.++..+.++..+
T Consensus 409 ~~a~~~~~~~~~ 420 (452)
T 3e4b_A 409 AEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.3e-12 Score=121.04 Aligned_cols=221 Identities=12% Similarity=0.064 Sum_probs=153.0
Q ss_pred chHHhHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcC--CC----HHHHHH
Q 047571 347 LFVRSSLVDMYCKCRDMNSAWRVFYETEE--RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFR--PD----VVTVAT 418 (681)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~----~~~~~~ 418 (681)
...+..+...+...|++++|...|+...+ .+..+|..+..++...|++++|+..+++..+.... ++ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45678889999999999999999977543 56788999999999999999999999998775321 12 467778
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhcCCh
Q 047571 419 VIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR---NVISWTAMIDSCIENGRL 495 (681)
Q Consensus 419 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 495 (681)
+...+...|++++|...++.+.+.. |+. ..+.+.|++++|...++++... +...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 8888899999999999999888754 332 3455556677777777765542 234556666666777777
Q ss_pred hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571 496 DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAV 575 (681)
Q Consensus 496 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 575 (681)
++|+..+++..+.. +.+...+..+..++...|++++|...++...+...
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------------------------------ 204 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------------------------------ 204 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------------------
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH------------------------------
Confidence 77777777666542 22344444444444444555555544444443321
Q ss_pred CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571 576 PVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 576 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 609 (681)
.+...|..+...+...|++++|...+++..+.
T Consensus 205 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 --NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 22456677777777888888888888877663
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=3.5e-12 Score=115.93 Aligned_cols=195 Identities=11% Similarity=0.045 Sum_probs=118.8
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 047571 69 EKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKL 148 (681)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (681)
|+++..+..+...+.+.|++++|+..|++..+.. |.+...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5677888999999999999999999999998875 4578889999999999999999999999999887 5677788888
Q ss_pred HHHhhcC-----------CChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 047571 149 VKMYTSC-----------GSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVI 217 (681)
Q Consensus 149 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 217 (681)
..++... |++++|+..|++. .+.. +-+...+..+-
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a---------------------------------l~~~-P~~~~~~~~lg 125 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDA---------------------------------ERVN-PRYAPLHLQRG 125 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH---------------------------------HHHC-TTCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHH---------------------------------HHhC-cccHHHHHHHH
Confidence 8888877 6666666666543 3321 11223344444
Q ss_pred HHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHH
Q 047571 218 KSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWE 294 (681)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 294 (681)
..+...|++++|...++...+.. .+...+..+..+|...|++++|...|++..+ .+...+..+...+...|++++
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 44445555555555555544444 3444444455555555555555555544322 233444455555555555555
Q ss_pred HHHHHHH
Q 047571 295 ALDCARW 301 (681)
Q Consensus 295 a~~~~~~ 301 (681)
|+..|++
T Consensus 204 A~~~~~~ 210 (217)
T 2pl2_A 204 AARAAAL 210 (217)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 5555443
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=2e-11 Score=114.18 Aligned_cols=190 Identities=13% Similarity=-0.023 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047571 483 TAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC 562 (681)
Q Consensus 483 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 562 (681)
..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHH
Confidence 333344444444444444444444321 2223334444444444444444444444444332 11334444444445555
Q ss_pred CCHHHHHHHhhhCCC----C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047571 563 GFLECAKLVFDAVPV----K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRI 637 (681)
Q Consensus 563 g~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 637 (681)
|++++|...++++.. | +...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|.++
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555444433 1 13344445555555555555555555555432 22445555555555555555555555
Q ss_pred HHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 638 FNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
++.+.+. .+.+...+..+..++.+.|+.++|.++++++
T Consensus 198 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 198 YDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5554432 1122344555555555555555555555443
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.45 E-value=5.7e-12 Score=119.72 Aligned_cols=243 Identities=14% Similarity=0.028 Sum_probs=137.8
Q ss_pred CCChHHHHHHHHHHHHcCc---CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 047571 391 NGRLEQALRSIAWMQQEGF---RPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYS 467 (681)
Q Consensus 391 ~~~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 467 (681)
.|++++|+..++++.+... +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4566777777777766531 1134456666666777777777777777777654 34566677777777777777777
Q ss_pred HHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcC
Q 047571 468 LKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKD 544 (681)
Q Consensus 468 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 544 (681)
...|+++.+ .+...+..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+.......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777776654 24566777777788888888888888877764 3444444444444455566777777766655542
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--C-CHHHHHHH
Q 047571 545 FASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT--P-NHFTFKVL 621 (681)
Q Consensus 545 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p-~~~~~~~l 621 (681)
. ++... + .++..+...++.++|+..+++..+.... | +...+..+
T Consensus 175 ~-~~~~~-------------------------------~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 221 (275)
T 1xnf_A 175 D-KEQWG-------------------------------W-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYL 221 (275)
T ss_dssp C-CCSTH-------------------------------H-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred C-cchHH-------------------------------H-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHH
Confidence 1 12111 1 1333344444445555555554432100 0 13455555
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571 622 LSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFR 674 (681)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 674 (681)
...+.+.|++++|.+.++++.+. .|+. +.....++...|++++|++.+
T Consensus 222 a~~~~~~g~~~~A~~~~~~al~~---~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 222 GKYYLSLGDLDSATALFKLAVAN---NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC---Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 66666666666666666655442 2311 222244555556666665543
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=2.9e-11 Score=114.66 Aligned_cols=220 Identities=13% Similarity=-0.013 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CCcchHHHHH
Q 047571 412 DVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK----CGVLDYSLKLFDEMEV-RNVISWTAMI 486 (681)
Q Consensus 412 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li 486 (681)
+...+..+-..+...|++++|...|+...+. .+...+..+...|.. .+++++|...|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3445556666677777777777777777762 244556666667777 7777777777766554 3455666666
Q ss_pred HHHHh----cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc----ccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571 487 DSCIE----NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ----LKALKLGKEIHGQVLKKDFASVPFVAAENIKM 558 (681)
Q Consensus 487 ~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (681)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .++.++|...+++..+.+ ++..+..+..+
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66777 777777777777776654 45556666666666 667777777777666654 44555556666
Q ss_pred HHh----cCCHHHHHHHhhhCCC-CChhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--
Q 047571 559 YGM----CGFLECAKLVFDAVPV-KGSITWTAIIEAYGY----NDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ-- 627 (681)
Q Consensus 559 ~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-- 627 (681)
|.. .+++++|...+++... .+...+..+...|.. .+++++|+..+++..+.+ +...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence 665 6666666666665544 334555556666666 666666666666666543 14455555666665
Q ss_pred --cCCHHHHHHHHHHhhh
Q 047571 628 --AGFADEACRIFNVMSR 643 (681)
Q Consensus 628 --~g~~~~A~~~~~~~~~ 643 (681)
.+++++|.+++++..+
T Consensus 233 ~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp SSSCCSTTHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHH
Confidence 6666666666665554
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=2e-12 Score=131.06 Aligned_cols=269 Identities=11% Similarity=-0.038 Sum_probs=156.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCH----HHHHHHHHHhhccCChhHHHHHHHHHHHhC-----CCCChhH
Q 047571 380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDV----VTVATVIPVCSQLKALNHGKEIHAYAVKNQ-----FLPNVSI 450 (681)
Q Consensus 380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 450 (681)
.+..+...+...|++++|+..|++..+.+.. +. ..+..+...+...|++++|...++++.+.. .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4455666777888888888888887775321 22 355666667777777777777777765421 0112334
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC-----C----CcchHHHHHHHHHhcCC----------hhHHHHHHHHhHhCCCC
Q 047571 451 ITSLMIMYSKCGVLDYSLKLFDEMEV-----R----NVISWTAMIDSCIENGR----------LDDALGVFRSMQLSKHR 511 (681)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~ 511 (681)
+..+...|...|++++|...+++..+ . ...++..+...|...|+ +++|...
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~---------- 198 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA---------- 198 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH----------
Confidence 55555566666666666665554432 0 11234444444444444 0000000
Q ss_pred CCHHHHHHHHHHhccccchHHHHHHHHHHHHc----CC-CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC--
Q 047571 512 PDSVAMARMLSVSGQLKALKLGKEIHGQVLKK----DF-ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG-- 579 (681)
Q Consensus 512 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-- 579 (681)
++.|...+++..+. +. ......+..+...|...|++++|...+++... .+
T Consensus 199 ------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 199 ------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 44444444433321 10 11133555566666667777777666665544 11
Q ss_pred --hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC---CCCC
Q 047571 580 --SITWTAIIEAYGYNDLCQEALSLFDKMRNGGF----T-PNHFTFKVLLSICNQAGFADEACRIFNVMSRGY---KIEA 649 (681)
Q Consensus 580 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~----~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~ 649 (681)
..++..+...|...|++++|+..+++..+... . ....++..+...+...|++++|.+++++..+.. +..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 22667777778888888888888877665310 0 124567777788888888888888887765421 1111
Q ss_pred -ChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 650 -LEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 650 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
....+..+..+|.+.|++++|.+++++.
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1456777888888888888888887764
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=2e-11 Score=114.22 Aligned_cols=196 Identities=11% Similarity=-0.041 Sum_probs=124.4
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHH
Q 047571 413 VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSC 489 (681)
Q Consensus 413 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 489 (681)
...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.++++.+ .+...+..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 3445555566666667777777766666553 33445555556666666666666666655432 2334455555555
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 047571 490 IENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAK 569 (681)
Q Consensus 490 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 569 (681)
...|++++|++.++++...+..|+ +...+..+..+|...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~----------------------------------~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPE----------------------------------RSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTT----------------------------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcc----------------------------------cHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555554222232 2334445555555556666665
Q ss_pred HHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 570 LVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 570 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
..++++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 162 EYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55555443 235567788888888899999999999888753 457777888888888999999999999888764
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=7.9e-11 Score=111.59 Aligned_cols=222 Identities=11% Similarity=-0.045 Sum_probs=145.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhc----cCChhHHHHHHHHHHHhCCCCChhHHH
Q 047571 377 NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQ----LKALNHGKEIHAYAVKNQFLPNVSIIT 452 (681)
Q Consensus 377 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 452 (681)
+..++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45556666667777777777777777766632 34455555566666 777777777777776654 556666
Q ss_pred HHHHHHHh----cCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 047571 453 SLMIMYSK----CGVLDYSLKLFDEMEV-RNVISWTAMIDSCIE----NGRLDDALGVFRSMQLSKHRPDSVAMARMLSV 523 (681)
Q Consensus 453 ~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 523 (681)
.+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66667776 7777777777766554 345566666666766 777777777777777654 44455555555
Q ss_pred hcc----ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHhhhCCC-CChhhHHHHHHHHHc--
Q 047571 524 SGQ----LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM----CGFLECAKLVFDAVPV-KGSITWTAIIEAYGY-- 592 (681)
Q Consensus 524 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~-- 592 (681)
+.. .+++++|...++...+.+ ++..+..+..+|.. .+++++|...+++... .+...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 555 667777777777766653 35566666777777 7777777777766554 235556666666666
Q ss_pred --CCChHHHHHHHHHHHhCC
Q 047571 593 --NDLCQEALSLFDKMRNGG 610 (681)
Q Consensus 593 --~~~~~~a~~~~~~m~~~g 610 (681)
.+++++|++.|++..+.|
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 677777777777776654
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=3.3e-11 Score=118.66 Aligned_cols=242 Identities=10% Similarity=0.054 Sum_probs=145.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCC-hhHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047571 378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKA-LNHGKEIHAYAVKNQFLPNVSIITSLMI 456 (681)
Q Consensus 378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 456 (681)
..+|+.+...+...|++++|+..+++..+.. +-+...|..+...+...|+ +++|...++.+.+.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4456667777777777777777777776642 1234455555666666665 777777777666654 334555666666
Q ss_pred HHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHH
Q 047571 457 MYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLG 533 (681)
Q Consensus 457 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 533 (681)
++.+.|++++|+..|+++.+ .+...|..+..++.+.|++++|+..|+++++.. +-+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~-------------------- 233 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRN-------------------- 233 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTC--------------------
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC--------------------
Confidence 66666666666666665543 234455555555666666666666666655542 122
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHH-----HHHhhhCCC--C-ChhhHHHHHHHHHcCC--ChHHHHHH
Q 047571 534 KEIHGQVLKKDFASVPFVAAENIKMYGM-CGFLECA-----KLVFDAVPV--K-GSITWTAIIEAYGYND--LCQEALSL 602 (681)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~--~-~~~~~~~l~~~~~~~~--~~~~a~~~ 602 (681)
...|..+..++.. .|..++| ...+++... | +...|+.+...+...| ++++|++.
T Consensus 234 ---------------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 234 ---------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp ---------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHH
Confidence 3444444444444 3332333 244443333 2 3557777777777777 67888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccC---------CHHHHHHHHHHh-hhcCCCCCC-hhHHHHHHHHHh
Q 047571 603 FDKMRNGGFTPNHFTFKVLLSICNQAG---------FADEACRIFNVM-SRGYKIEAL-EEHYLIMIDILT 662 (681)
Q Consensus 603 ~~~m~~~g~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~ 662 (681)
++++ +. -+.+...+..++..|.+.| ..++|+++++++ .+ ..|. ...|..+...+.
T Consensus 299 ~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~---~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 299 LLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE---KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHH
T ss_pred HHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHHH
Confidence 8887 43 2446778888888887764 257888888877 43 3454 455666666554
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=4.6e-11 Score=109.43 Aligned_cols=195 Identities=11% Similarity=-0.025 Sum_probs=113.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 047571 447 NVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV 523 (681)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 523 (681)
+...+..+...+...|++++|.+.++++.+ .+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 345566667777777777777777776553 244566666777777777777777777776643 3345566666666
Q ss_pred hccc-cchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHH
Q 047571 524 SGQL-KALKLGKEIHGQVLKKDFASV-PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQE 598 (681)
Q Consensus 524 ~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 598 (681)
+... |++++|...++.+.+.+..|+ ...+..+..++...|++++|...++++.. | +...+..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 6666 777777777666665222222 44455555555555555555555554443 2 24445555555555555555
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 599 ALSLFDKMRNGGFT-PNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 599 a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+
T Consensus 166 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555532 2 3444454455555555555555555555543
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=6.2e-12 Score=116.93 Aligned_cols=196 Identities=11% Similarity=-0.034 Sum_probs=130.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 047571 446 PNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLS 522 (681)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 522 (681)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455667777778888888888888887754 345677777888888888888888888887753 345667777777
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHH
Q 047571 523 VSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEA 599 (681)
Q Consensus 523 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 599 (681)
.+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.. .+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888877754 33566777777788888888888888776655 3456677777777788888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 600 LSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 600 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
+..++++.+.. +.+..++..+..++...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888877753 345677777778888888888888888877653
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=7.2e-12 Score=126.65 Aligned_cols=291 Identities=12% Similarity=-0.023 Sum_probs=182.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC----HHHHHHHHHHhhccCChhHHHHHHHHHHHh----CCCC-C
Q 047571 377 NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD----VVTVATVIPVCSQLKALNHGKEIHAYAVKN----QFLP-N 447 (681)
Q Consensus 377 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 447 (681)
....+......+...|++++|...|++..+.+.. + ...+..+...+...|+++.|...++.+... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445667778888999999999999998876322 2 245667777888899999999998886543 1111 2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhcCC--------------------hhHH
Q 047571 448 VSIITSLMIMYSKCGVLDYSLKLFDEMEV-----RN----VISWTAMIDSCIENGR--------------------LDDA 498 (681)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A 498 (681)
..++..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44667777888888888888888877653 22 2367777777888888 7888
Q ss_pred HHHHHHhHhC----CCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCCHHHH
Q 047571 499 LGVFRSMQLS----KHRPD-SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA-SV----PFVAAENIKMYGMCGFLECA 568 (681)
Q Consensus 499 ~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a 568 (681)
+..+++.... +..|. ..++..+...+...|++++|...+++..+.... ++ ...+..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8877766442 11111 234556666677777777777777766643110 11 23556666667777777777
Q ss_pred HHHhhhCCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHH
Q 047571 569 KLVFDAVPV-----KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNG----GFTP-NHFTFKVLLSICNQAGFADEA 634 (681)
Q Consensus 569 ~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A 634 (681)
...+++... ++ ..++..+...|...|++++|...+++..+. +-.+ ...++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 776665543 11 345566666666777777777776666542 1111 144566666666777777777
Q ss_pred HHHHHHhhhcCCCCCC----hhHHHHHHHHHhhcCCHH
Q 047571 635 CRIFNVMSRGYKIEAL----EEHYLIMIDILTRFGRIE 668 (681)
Q Consensus 635 ~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 668 (681)
.+.+++..+...-..+ ..++..+..++...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 7777766654222222 233444555555555444
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.39 E-value=2.9e-12 Score=121.78 Aligned_cols=242 Identities=8% Similarity=-0.159 Sum_probs=168.1
Q ss_pred cCCHHHHHHHHhhcCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHH
Q 047571 360 CRDMNSAWRVFYETEER-------NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHG 432 (681)
Q Consensus 360 ~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 432 (681)
.|++++|...|+.+.+. +..+|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777666542 35567888888888899999999988888763 23567788888888889999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCC
Q 047571 433 KEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKH 510 (681)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 510 (681)
...++.+.+.. +.+..++..+...|.+.|++++|...++++.+ |+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 99998888864 44677888888899999999999999988764 554444455555677799999999998877653
Q ss_pred CCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHH
Q 047571 511 RPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAY 590 (681)
Q Consensus 511 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 590 (681)
+++...+ .+...+...++.+.|...+....+......+ .+...|..+...|
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~~~~la~~~ 225 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAE----------------------------HLSETNFYLGKYY 225 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH----------------------------HHHHHHHHHHHHH
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccc----------------------------cccHHHHHHHHHH
Confidence 3333333 3555556666667777776665442110000 0123677788888
Q ss_pred HcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 047571 591 GYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIF 638 (681)
Q Consensus 591 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (681)
...|++++|...|++..+. .| +...+ ..++...|++++|++.+
T Consensus 226 ~~~g~~~~A~~~~~~al~~--~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVAN--NVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTT--CCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHhC--CchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 8888999999999888875 34 33333 45667778888888776
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=1.5e-11 Score=121.17 Aligned_cols=221 Identities=10% Similarity=0.024 Sum_probs=151.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCC-hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc
Q 047571 451 ITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGR-LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ 526 (681)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 526 (681)
|..+...+.+.|++++|++.++++.+ | +...|+.+..++...|+ +++|+..|++..+.. +-+...|..+..++..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 34444445555555555555555443 2 33445555555555564 666666666665542 2244455555556666
Q ss_pred ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHc-CCChHHH---
Q 047571 527 LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGY-NDLCQEA--- 599 (681)
Q Consensus 527 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~-~~~~~~a--- 599 (681)
.|++++|...++++++.+ +-+...|..+..++...|++++|...++++.. | +...|+.+..++.. .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~ 257 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 257 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHH
Confidence 666666666666666543 23466777777888888888888888887766 3 47789999999998 6666888
Q ss_pred --HHHHHHHHhCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcC---------C
Q 047571 600 --LSLFDKMRNGGFTPNHFTFKVLLSICNQAG--FADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFG---------R 666 (681)
Q Consensus 600 --~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~ 666 (681)
++.+++.++.. +-+...|..+...+...| ++++|++.++++ + ....+...+..++++|.+.| .
T Consensus 258 ~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 258 REVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 58899998853 337889999999999988 689999999887 3 22334788999999999874 3
Q ss_pred HHHHHHHHHhc
Q 047571 667 IEEAHRFREMS 677 (681)
Q Consensus 667 ~~~A~~~~~~~ 677 (681)
+++|+++++++
T Consensus 334 ~~~A~~~~~~l 344 (382)
T 2h6f_A 334 LNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 59999999987
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=4.9e-12 Score=124.09 Aligned_cols=269 Identities=11% Similarity=-0.028 Sum_probs=161.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC----HHHHHHHHHHhhccCChhHHHHHHHHHHHh----CCC-CChhHH
Q 047571 381 WTALMSGYVSNGRLEQALRSIAWMQQEGFRPD----VVTVATVIPVCSQLKALNHGKEIHAYAVKN----QFL-PNVSII 451 (681)
Q Consensus 381 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 451 (681)
+......+...|++++|...+++..+.... + ...+..+...+...|+++.|...++...+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 444556677778888888888877765311 2 245556666677777777777777665432 111 113344
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhcCC-------------hhHHHHHHHHhHhCC
Q 047571 452 TSLMIMYSKCGVLDYSLKLFDEMEV-----RN----VISWTAMIDSCIENGR-------------LDDALGVFRSMQLSK 509 (681)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~-------------~~~A~~~~~~m~~~g 509 (681)
..+...|...|++++|...+++..+ ++ ..++..+...+...|+ .+++.+.
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------- 158 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA-------- 158 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH--------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH--------
Confidence 4555555556666666555554432 11 1134444444444444 0000000
Q ss_pred CCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc----CC-CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC
Q 047571 510 HRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK----DF-ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG 579 (681)
Q Consensus 510 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~ 579 (681)
++.|...+++..+. +. ......+..+...|...|++++|...+++... ++
T Consensus 159 --------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 159 --------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 44444444433321 10 11133556666777777777777777766554 11
Q ss_pred ----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC---CC
Q 047571 580 ----SITWTAIIEAYGYNDLCQEALSLFDKMRNG----GFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGY---KI 647 (681)
Q Consensus 580 ----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~ 647 (681)
..++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+++++..+.. +.
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 236777888888899999999988887653 1111 15677888889999999999999998875531 11
Q ss_pred CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 648 EA-LEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 648 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
.+ ....+..+..+|.+.|++++|.+.+++..
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11 14578888999999999999999988754
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.38 E-value=4.5e-11 Score=109.49 Aligned_cols=194 Identities=12% Similarity=-0.027 Sum_probs=113.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047571 480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMY 559 (681)
Q Consensus 480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 559 (681)
..+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 345555666666666666666666665542 2334555566666666666666666666666543 22455566666666
Q ss_pred Hhc-CCHHHHHHHhhhCCC----CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 047571 560 GMC-GFLECAKLVFDAVPV----KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADE 633 (681)
Q Consensus 560 ~~~-g~~~~a~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 633 (681)
... |++++|...++++.. |+ ...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666665543 11 3455566666666666666666666666532 2345566666666666666666
Q ss_pred HHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 634 ACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 634 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
|.++++.+.+. ....+...+..+...+...|+.++|..+++.+
T Consensus 166 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 166 ADYYFKKYQSR-VEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 66666665543 11123445555556666666666666665554
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=1.1e-11 Score=125.29 Aligned_cols=295 Identities=12% Similarity=0.007 Sum_probs=214.7
Q ss_pred CCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CcCC
Q 047571 343 YSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE--R-N----EILWTALMSGYVSNGRLEQALRSIAWMQQE----GFRP 411 (681)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p 411 (681)
.......+......+...|++++|...|++..+ + + ..+|..+...+...|++++|...+++.... +-.|
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 344555667788889999999999999988654 2 3 356888889999999999999999987543 2222
Q ss_pred -CHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCC-C----ChhHHHHHHHHHHhcCC--------------------hH
Q 047571 412 -DVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFL-P----NVSIITSLMIMYSKCGV--------------------LD 465 (681)
Q Consensus 412 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~--------------------~~ 465 (681)
....+..+...+...|++++|...++...+.... + ...++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2445667777888999999999999987753211 1 14477788888999999 88
Q ss_pred HHHHHHhhCCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCC----HHHHHHHHHHhccccchH
Q 047571 466 YSLKLFDEMEV-----RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKH-RPD----SVAMARMLSVSGQLKALK 531 (681)
Q Consensus 466 ~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~ 531 (681)
+|...+++... .+ ..++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 88888876542 11 24677888889999999999999998875321 122 226777888889999999
Q ss_pred HHHHHHHHHHHcCC----CC-ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHcCCChH
Q 047571 532 LGKEIHGQVLKKDF----AS-VPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWTAIIEAYGYNDLCQ 597 (681)
Q Consensus 532 ~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~ 597 (681)
+|...+++..+... .+ ...++..+...|...|++++|...+++... .+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 99999998775311 11 155778889999999999999999987765 22 457788888999999999
Q ss_pred HHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 047571 598 EALSLFDKMRNG----GFTP-NHFTFKVLLSICNQAGFADEACRI 637 (681)
Q Consensus 598 ~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 637 (681)
+|.+.+++..+. |..+ ...++..+...+...|+...+..-
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 369 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNS 369 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHH
Confidence 999999987653 2122 234566666666666665544433
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=6.7e-11 Score=112.05 Aligned_cols=250 Identities=10% Similarity=0.010 Sum_probs=167.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC--HHHHHHHHHHhhc
Q 047571 351 SSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD--VVTVATVIPVCSQ 425 (681)
Q Consensus 351 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~ 425 (681)
......+...|++++|...|+...+. +...+..+...+...|++++|+..+++..+.+..|+ ...|..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 45667777888888888888876542 455788888888889999999999888887432222 2236777788888
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHH
Q 047571 426 LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVF 502 (681)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~ 502 (681)
.|++++|...++...+.. +.+..++..+...|...|++++|...+++..+ | +...|..+...+...+++++|++.|
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999998888888765 44667788888888888889888888888876 2 3445666662444456888888888
Q ss_pred HHhHhCCCCCCHHHHHHHHHHhccccc---hHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC
Q 047571 503 RSMQLSKHRPDSVAMARMLSVSGQLKA---LKLGKEIHGQVLKKD-FASVPFVAAENIKMYGMCGFLECAKLVFDAVPVK 578 (681)
Q Consensus 503 ~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 578 (681)
++..+.. +.+...+..+..++...|+ .+.|...+++..+.. -.|+.. ...+
T Consensus 166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~----------------------- 220 (272)
T 3u4t_A 166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDEL----------------------- 220 (272)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHHH-----------------------
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHHH-----------------------
Confidence 8887753 2234555555566665565 666666666655421 011110 0000
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 047571 579 GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA 628 (681)
Q Consensus 579 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 628 (681)
..+|..+...|...|++++|.+.+++..+.. +-+...+..+.......
T Consensus 221 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 221 -IEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC------
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhhhhccc
Confidence 1356777888888899999999999988853 33666666665544433
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.36 E-value=7.9e-12 Score=116.20 Aligned_cols=192 Identities=14% Similarity=0.104 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHH
Q 047571 414 VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCI 490 (681)
Q Consensus 414 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 490 (681)
..+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.++++.+ .+...+..+...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 344444445555555666655555555432 23444555555555556666666655555442 23345555555555
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 047571 491 ENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKL 570 (681)
Q Consensus 491 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 570 (681)
..|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5566666666665555432 2334455555555555566666666555555442 2234455555555555666666655
Q ss_pred HhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 571 VFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 571 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
.++++.. .+..+|..+...|...|++++|.+.++++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5555443 2244555555555556666666666665555
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.31 E-value=1.5e-11 Score=124.64 Aligned_cols=267 Identities=9% Similarity=0.004 Sum_probs=184.2
Q ss_pred chHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch----hhHHHHHHHHHhCCChHHHHHHHHHHHHc----C-cCCCHH
Q 047571 347 LFVRSSLVDMYCKCRDMNSAWRVFYETEE--R-NE----ILWTALMSGYVSNGRLEQALRSIAWMQQE----G-FRPDVV 414 (681)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g-~~p~~~ 414 (681)
...+..+...+...|++++|...|++..+ + +. .+|..+...+...|++++|+..+++..+. + ......
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44555677888999999999999988764 2 32 47888999999999999999999987653 1 122345
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHhC-----CCCChhHHHHHHHHHHhcCC-----------------hHHHHHHHh
Q 047571 415 TVATVIPVCSQLKALNHGKEIHAYAVKNQ-----FLPNVSIITSLMIMYSKCGV-----------------LDYSLKLFD 472 (681)
Q Consensus 415 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~ 472 (681)
.+..+...+...|++++|...++.+.+.. ......++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 67777888999999999999999877641 12234577888889999999 888888877
Q ss_pred hCCC-----C----CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CCHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 047571 473 EMEV-----R----NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHR-PDSVAMARMLSVSGQLKALKLGKEIHGQVLK 542 (681)
Q Consensus 473 ~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 542 (681)
+..+ . ....+..+...|...|++++|+..+++..+.... ++..
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------- 260 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA--------------------------- 260 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH---------------------------
Confidence 6542 1 1235666677777777777777777776542100 1100
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C---C----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----
Q 047571 543 KDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K---G----SITWTAIIEAYGYNDLCQEALSLFDKMRNG---- 609 (681)
Q Consensus 543 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---- 609 (681)
.....+..+..+|...|++++|...+++... + + ..++..+...|...|++++|...+++..+.
T Consensus 261 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 261 ----AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp ----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 0012344445555555555555555544433 1 1 346777888888888999988888887653
Q ss_pred CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 610 GFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 610 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
+..+ ...++..+...|...|++++|.+++++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 2457788888999999999999999887653
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=2.9e-08 Score=104.51 Aligned_cols=227 Identities=9% Similarity=-0.055 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHH-HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 047571 396 QALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGK-EIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEM 474 (681)
Q Consensus 396 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 474 (681)
.+..+|++.... ++-+...|.....-+...|+.+.|. .+++..... ++.+...+-.++....+.|++++|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455667777665 3335566666666667778888886 999988864 3556666777888888899999999988877
Q ss_pred CC-------------CC------------cchHHHHHHHHHhcCChhHHHHHHHHhHhC-C-CCCCHHHHHHHHHHhccc
Q 047571 475 EV-------------RN------------VISWTAMIDSCIENGRLDDALGVFRSMQLS-K-HRPDSVAMARMLSVSGQL 527 (681)
Q Consensus 475 ~~-------------~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~ 527 (681)
.. |+ ...|...+....+.|+.+.|..+|.+..+. + ..+........+.-. ..
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-IS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hC
Confidence 53 21 125677777777888899999999998875 2 122222222223322 23
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHcCCChHHHHH
Q 047571 528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG----SITWTAIIEAYGYNDLCQEALS 601 (681)
Q Consensus 528 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~ 601 (681)
++.+.|..+|+..++. .+.++..+...++.....|+.+.|..+|+.... ++ ...|...+..-...|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5588999999988876 344667777888888888999999999998776 32 3568888887788899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 047571 602 LFDKMRNGGFTPNHFTFKVLLSICNQA 628 (681)
Q Consensus 602 ~~~~m~~~g~~p~~~~~~~l~~~~~~~ 628 (681)
+.+++.+. .|+......+++-|.-.
T Consensus 563 v~~R~~~~--~P~~~~~~~f~~ry~~~ 587 (679)
T 4e6h_A 563 LEKRFFEK--FPEVNKLEEFTNKYKVL 587 (679)
T ss_dssp HHHHHHHH--STTCCHHHHHHHHTCBT
T ss_pred HHHHHHHh--CCCCcHHHHHHHHhcCC
Confidence 99999885 44434444444444333
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.28 E-value=5.9e-11 Score=116.31 Aligned_cols=265 Identities=12% Similarity=0.036 Sum_probs=181.7
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCC--C-C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CcCC-CHHHH
Q 047571 349 VRSSLVDMYCKCRDMNSAWRVFYETEE--R-N----EILWTALMSGYVSNGRLEQALRSIAWMQQE----GFRP-DVVTV 416 (681)
Q Consensus 349 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~ 416 (681)
.+......+...|++++|...|++..+ + + ...+..+...+...|++++|...+++..+. +..| ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 345567788899999999999988754 2 3 357888999999999999999999987543 2122 24566
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCC--------------------hHHHHHHH
Q 047571 417 ATVIPVCSQLKALNHGKEIHAYAVKNQFL-PN----VSIITSLMIMYSKCGV--------------------LDYSLKLF 471 (681)
Q Consensus 417 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 471 (681)
..+...+...|++++|...++...+.... ++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 77788899999999999999987763211 12 3477788888989999 88888777
Q ss_pred hhCCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 047571 472 DEMEV-----RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKH-RPDSVAMARMLSVSGQLKALKLGKEIHGQVL 541 (681)
Q Consensus 472 ~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 541 (681)
++... .+ ...+..+...+...|++++|.+.+++..+... .++..
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------------------------- 220 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA-------------------------- 220 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH--------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH--------------------------
Confidence 66532 11 23455666666677777777777766543210 00000
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC---
Q 047571 542 KKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNG--- 609 (681)
Q Consensus 542 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--- 609 (681)
.....+..+...|...|++++|...+++... .+ ..++..+...+...|++++|...+++..+.
T Consensus 221 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 221 -----AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 0122444455555556666666655554433 11 346777888888999999999998887653
Q ss_pred -CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 610 -GFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 610 -g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
+-.+ ...++..+...+.+.|++++|.+++++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1111 2457788899999999999999999988653
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=9.4e-10 Score=106.05 Aligned_cols=211 Identities=10% Similarity=0.034 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHH-------hcCCh-------HHHHHHHhhCCC---C-CcchHHHHHHHHHh
Q 047571 430 NHGKEIHAYAVKNQFLPNVSIITSLMIMYS-------KCGVL-------DYSLKLFDEMEV---R-NVISWTAMIDSCIE 491 (681)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~---~-~~~~~~~li~~~~~ 491 (681)
++|..+|+.+.... +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888764 556677777777665 34775 888888887654 3 34478888888888
Q ss_pred cCChhHHHHHHHHhHhCCCCCC-HH-HHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-hcCCHHHH
Q 047571 492 NGRLDDALGVFRSMQLSKHRPD-SV-AMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYG-MCGFLECA 568 (681)
Q Consensus 492 ~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a 568 (681)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|+++.|..+|++.++... .+...|...+.... ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999888874 443 22 677777888888888888888888887542 23444444333322 35888888
Q ss_pred HHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571 569 KLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGG-FTP--NHFTFKVLLSICNQAGFADEACRIFNVMS 642 (681)
Q Consensus 569 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (681)
..+|+++.. | +...|..++..+.+.|++++|..+|++..+.. ++| +...|..++....+.|+.++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887765 3 36677788888888888888888888888753 354 35677777888888888888888888877
Q ss_pred hc
Q 047571 643 RG 644 (681)
Q Consensus 643 ~~ 644 (681)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=7.7e-08 Score=101.32 Aligned_cols=64 Identities=6% Similarity=-0.084 Sum_probs=32.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCC---hhHHHHhhhhcC
Q 047571 105 VNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGS---FEDAEKVFDESS 169 (681)
Q Consensus 105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~ 169 (681)
-|..+|..++..+.+.+.+..+..+|+.+...- +.....|...+..-.+.|. ++.+.++|+...
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 355555555555555555555555555555442 3444444444554445555 555555555443
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.24 E-value=8e-11 Score=120.77 Aligned_cols=206 Identities=9% Similarity=-0.058 Sum_probs=134.5
Q ss_pred hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHH
Q 047571 429 LNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVL-DYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRS 504 (681)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~ 504 (681)
++.+...++...... +.+...+..+...|...|++ ++|++.|++..+ | +...|..+..+|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555666666544332 34667777788888888888 888888887754 3 456788888888888888888888888
Q ss_pred hHhCCCCCCHHHHHHHHHHhccc---------cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--------CCHHH
Q 047571 505 MQLSKHRPDSVAMARMLSVSGQL---------KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC--------GFLEC 567 (681)
Q Consensus 505 m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 567 (681)
..+. .|+...+..+..++... |++++|...+++..+.. +.+...+..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 8875 46667777777777777 88888888888777754 22455666666666665 55666
Q ss_pred HHHHhhhCCC--C----ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 047571 568 AKLVFDAVPV--K----GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFN 639 (681)
Q Consensus 568 a~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (681)
|...|+++.. | +...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...|++++|++.+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666655444 3 34455555566666666666666666655532 2244555555555555565555555443
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=4.5e-10 Score=112.28 Aligned_cols=220 Identities=10% Similarity=-0.108 Sum_probs=152.6
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CC-----CHHHHH
Q 047571 454 LMIMYSKCGVLDYSLKLFDEMEV-----RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKH-RP-----DSVAMA 518 (681)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p-----~~~~~~ 518 (681)
....+...|++++|...+++..+ ++ ..+|..+...|...|++++|+..+++..+.-- .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556677888888877776643 22 24667777778888888888887777654211 11 123566
Q ss_pred HHHHHhccccchHHHHHHHHHHHHcCCC-C----ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHH
Q 047571 519 RMLSVSGQLKALKLGKEIHGQVLKKDFA-S----VPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWT 584 (681)
Q Consensus 519 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~ 584 (681)
.+..+|...|++++|...+++..+.... . ...++..+..+|...|++++|...+++... .+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6677777888888888888776643111 1 134677788888888888888888876655 22 44678
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCC---CC-CHHHHHHHHHHHhccCC---HHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 047571 585 AIIEAYGYNDLCQEALSLFDKMRNGGF---TP-NHFTFKVLLSICNQAGF---ADEACRIFNVMSRGYKIEAL-EEHYLI 656 (681)
Q Consensus 585 ~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~~ 656 (681)
.+...|...|++++|...+++..+..- .| ....+..+...+...|+ .++|+.+++.. +..|+ ...+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK----MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----cCHHHHHHHHHH
Confidence 888889999999999999988765310 12 23345677888888898 77777777654 33333 567888
Q ss_pred HHHHHhhcCCHHHHHHHHHhc
Q 047571 657 MIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 657 l~~~~~~~g~~~~A~~~~~~~ 677 (681)
+..+|.+.|++++|.+.+++.
T Consensus 345 la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999988764
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=4.6e-09 Score=104.91 Aligned_cols=223 Identities=8% Similarity=-0.069 Sum_probs=122.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHc----CcCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCC-C-----ChhHHH
Q 047571 384 LMSGYVSNGRLEQALRSIAWMQQE----GFRP-DVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFL-P-----NVSIIT 452 (681)
Q Consensus 384 li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 452 (681)
....+...|++++|+..+++..+. +-.+ ...++..+...+...|+++.|...+....+.-.. + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556667777777777766543 1111 2234555555666666666666666665542111 1 123455
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC-----CCc----chHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCCCHHHHHH
Q 047571 453 SLMIMYSKCGVLDYSLKLFDEMEV-----RNV----ISWTAMIDSCIENGRLDDALGVFRSMQLS----KHRPDSVAMAR 519 (681)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ 519 (681)
.+...|...|++++|...+++..+ ++. .++..+...|...|++++|++.+++..+. +..|
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~------- 261 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP------- 261 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG-------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch-------
Confidence 555566666666666666555432 111 24555555566666666666665555441 1111
Q ss_pred HHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC---hhhHHHHHHHHH
Q 047571 520 MLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG---SITWTAIIEAYG 591 (681)
Q Consensus 520 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~---~~~~~~l~~~~~ 591 (681)
....++..+..+|.+.|++++|...+++... .+ ...+..+...+.
T Consensus 262 ---------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~ 314 (383)
T 3ulq_A 262 ---------------------------SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL 314 (383)
T ss_dssp ---------------------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred ---------------------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 1133344444444445555554444444332 11 123455667777
Q ss_pred cCCC---hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 592 YNDL---CQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 592 ~~~~---~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
..|+ +++|+.++++. +..| ....+..+...|...|++++|.+++++..+
T Consensus 315 ~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 315 SGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp SSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777 66777776665 2233 345677788888888888888888887754
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=5.8e-10 Score=98.37 Aligned_cols=163 Identities=10% Similarity=0.009 Sum_probs=107.7
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047571 478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIK 557 (681)
Q Consensus 478 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 557 (681)
+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|+++.|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45577888888888888888888888887753 3345566777777777777777777777776654 223555555666
Q ss_pred HHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047571 558 MYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEA 634 (681)
Q Consensus 558 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 634 (681)
.+...++++.|...+.+... .+...+..+...|...|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 66666666666666665544 234556666666666666666666666666642 33556666666666666666666
Q ss_pred HHHHHHhhh
Q 047571 635 CRIFNVMSR 643 (681)
Q Consensus 635 ~~~~~~~~~ 643 (681)
++.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665544
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=6.2e-10 Score=98.15 Aligned_cols=159 Identities=14% Similarity=0.005 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHH
Q 047571 514 SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAY 590 (681)
Q Consensus 514 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 590 (681)
...|..+...+...|++++|...|++.++.+ +-++..+..+..+|.+.|++++|...+..... .+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 3445555555666666666666666655543 22355555566666666666666666555444 2244455555555
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHH
Q 047571 591 GYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEE 669 (681)
Q Consensus 591 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 669 (681)
...++++.|...+++..+.. +.+...+..+..++.+.|++++|++.|++..+. .| +...|..++.+|.+.|++++
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCHHH
Confidence 55666666666666655532 234555555666666666666666666655542 22 24555566666666666666
Q ss_pred HHHHHHhc
Q 047571 670 AHRFREMS 677 (681)
Q Consensus 670 A~~~~~~~ 677 (681)
|++.+++.
T Consensus 160 A~~~~~~a 167 (184)
T 3vtx_A 160 AVKYFKKA 167 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=1.6e-10 Score=118.51 Aligned_cols=188 Identities=10% Similarity=-0.058 Sum_probs=88.8
Q ss_pred chHHHHHHHHHhcCCh-hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571 480 ISWTAMIDSCIENGRL-DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM 558 (681)
Q Consensus 480 ~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (681)
..+..+..++...|++ ++|++.|++..+.. +-+...+..+..++...|++++|...++..++.. |+...+..+..+
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~ 179 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMV 179 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHH
Confidence 3444444445555555 55555555554432 2223444445555555555555555555554432 333444455555
Q ss_pred HHhc---------CCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcC--------CChHHHHHHHHHHHhCCCC---CCH
Q 047571 559 YGMC---------GFLECAKLVFDAVPV--K-GSITWTAIIEAYGYN--------DLCQEALSLFDKMRNGGFT---PNH 615 (681)
Q Consensus 559 ~~~~---------g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~g~~---p~~ 615 (681)
|... |++++|...++++.. | +...|..+..+|... |++++|++.|++..+.. + -+.
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 258 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNP 258 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCH
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCH
Confidence 5555 555555555554433 2 234444444444444 44555555555554431 1 244
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571 616 FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFR 674 (681)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 674 (681)
..|..+..+|...|++++|.+.|++..+. .| +...+..+..++...|+.++|.+.+
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555544432 12 2334444555555555555554433
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.21 E-value=3.4e-09 Score=102.14 Aligned_cols=212 Identities=8% Similarity=-0.000 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHcCcCCCHHHHHHHHHHhh-------ccCCh-------hHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 047571 395 EQALRSIAWMQQEGFRPDVVTVATVIPVCS-------QLKAL-------NHGKEIHAYAVKNQFLPNVSIITSLMIMYSK 460 (681)
Q Consensus 395 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (681)
++|..+|++..... +-+...|..+...+. +.|+. ++|..+|+...+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 78889999988752 335556666666654 35776 8999999998874224456688999999999
Q ss_pred cCChHHHHHHHhhCCC--CC-cc-hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHh-ccccchHHHHH
Q 047571 461 CGVLDYSLKLFDEMEV--RN-VI-SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVS-GQLKALKLGKE 535 (681)
Q Consensus 461 ~g~~~~a~~~~~~~~~--~~-~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~ 535 (681)
.|++++|.++|+++.+ |+ .. .|..+...+.+.|++++|..+|++..+.. +++...|....... ...|+.+.|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998876 43 33 78899999999999999999999999864 33444444333332 23699999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----C--ChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 536 IHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----K--GSITWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
+|+..++.. +.++..+..++..+.+.|++++|..+|+++.. | ....|..++..+...|+.++|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998864 33688899999999999999999999998765 1 245788889999999999999999999988
Q ss_pred C
Q 047571 609 G 609 (681)
Q Consensus 609 ~ 609 (681)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 5
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=2.9e-10 Score=109.98 Aligned_cols=229 Identities=11% Similarity=0.083 Sum_probs=145.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--------C---CcchHHHHHHHHHhcCChhHHHHHHHHhHhC------C
Q 047571 447 NVSIITSLMIMYSKCGVLDYSLKLFDEMEV--------R---NVISWTAMIDSCIENGRLDDALGVFRSMQLS------K 509 (681)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g 509 (681)
...++..+...+...|++++|..+++++.+ . ....+..+...|...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456677888888889999999988887754 1 2246777788888889999999988888764 2
Q ss_pred CCC-CHHHHHHHHHHhccccchHHHHHHHHHHHHc------CCCC-ChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC---
Q 047571 510 HRP-DSVAMARMLSVSGQLKALKLGKEIHGQVLKK------DFAS-VPFVAAENIKMYGMCGFLECAKLVFDAVPVK--- 578 (681)
Q Consensus 510 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 578 (681)
-.| ...++..+...+...|++++|...++++.+. +..+ ....+..+...|...|++++|...++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 122 2446677777888888888888888877753 2112 2455666777777777777777777655431
Q ss_pred -----C---hhhHHHHHHHHHcCCChHHHHHHHHHHHhC-------CCCCC-------HHHHHHHHHHHhccCCHHHHHH
Q 047571 579 -----G---SITWTAIIEAYGYNDLCQEALSLFDKMRNG-------GFTPN-------HFTFKVLLSICNQAGFADEACR 636 (681)
Q Consensus 579 -----~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 636 (681)
+ ..++..+...|...|++++|.+.++++.+. ...+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 345666777777777777777777777652 11111 1112222223333344444444
Q ss_pred HHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 637 IFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 637 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
.++.... ..| ....+..++.+|.+.|++++|.+++++..
T Consensus 266 ~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 266 WYKACKV---DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhcCC---CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5544432 233 36789999999999999999999998753
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=2e-10 Score=111.09 Aligned_cols=240 Identities=11% Similarity=0.067 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHc-------CcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh------CC-
Q 047571 379 ILWTALMSGYVSNGRLEQALRSIAWMQQE-------GFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKN------QF- 444 (681)
Q Consensus 379 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 444 (681)
.++..+...+...|++++|...++++.+. ........+..+...+...|++++|...++.+... +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45666677777777777777777776652 12223455666667777778888888877776653 11
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-------C----CcchHHHHHHHHHhcCChhHHHHHHHHhHhC-----
Q 047571 445 LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV-------R----NVISWTAMIDSCIENGRLDDALGVFRSMQLS----- 508 (681)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----- 508 (681)
+....++..+...|...|++++|...++++.+ + ....+..+...+...|++++|++.++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 22345566677777777888777777766542 1 1234555666666777777777777666543
Q ss_pred -CCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHcC-------CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC
Q 047571 509 -KHRPD-SVAMARMLSVSGQLKALKLGKEIHGQVLKKD-------FASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG 579 (681)
Q Consensus 509 -g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 579 (681)
+..|. ..++..+...+...|++++|...++++.+.. ..+....... .
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------~ 243 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------H 243 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------H
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------H
Confidence 11121 2234444455555555555555555544310 0000000000 0
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
...+..+...+...+.+.++...+++..... +.+..++..+..+|.+.|++++|.+++++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122333344445666677777777776532 33567788899999999999999999987754
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.12 E-value=9.3e-09 Score=102.30 Aligned_cols=264 Identities=12% Similarity=-0.019 Sum_probs=180.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHH----HHHHHHHHhhccCChhHHHHHHHHHHHhCCC-CC----hhHH
Q 047571 381 WTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVV----TVATVIPVCSQLKALNHGKEIHAYAVKNQFL-PN----VSII 451 (681)
Q Consensus 381 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 451 (681)
.......+...|++++|...+++........+.. .+..+...+...|+++.|...+++....... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4445556778999999999999987754222222 3455556778889999999999887753211 11 2235
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC-------C----CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCC--C--CHHH
Q 047571 452 TSLMIMYSKCGVLDYSLKLFDEMEV-------R----NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHR--P--DSVA 516 (681)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~ 516 (681)
..+...+...|++++|...+++... + ....+..+...+...|++++|...+++.....-. + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 5677788889999999988877643 1 1234566777888999999999999888764321 1 2345
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHcCCCCC--hhHHH----HHHHHHHhcCCHHHHHHHhhhCCCCC-------hhhH
Q 047571 517 MARMLSVSGQLKALKLGKEIHGQVLKKDFASV--PFVAA----ENIKMYGMCGFLECAKLVFDAVPVKG-------SITW 583 (681)
Q Consensus 517 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~ 583 (681)
+..+...+...|++++|...+++..+....+. ..... ..+..+...|++++|...+++...++ ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66777778888999999999988775421211 11111 23344778899999998888877632 1245
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 584 TAIIEAYGYNDLCQEALSLFDKMRNG----GFTPNH-FTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 584 ~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
..+...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|.+.+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 66777888888999988888877542 222222 35666777888888888998888877764
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.12 E-value=3.2e-08 Score=98.38 Aligned_cols=286 Identities=11% Similarity=-0.016 Sum_probs=196.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCC----CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCcC-CCH----HHHH
Q 047571 351 SSLVDMYCKCRDMNSAWRVFYETEE----RNE----ILWTALMSGYVSNGRLEQALRSIAWMQQEGFR-PDV----VTVA 417 (681)
Q Consensus 351 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~----~~~~ 417 (681)
......+...|++++|...+++... .+. .+++.+...+...|++++|...+++....... .+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3445566788999999999876432 122 25667778888999999999999987653211 122 2345
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHh----CCC--C-ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C------CcchH
Q 047571 418 TVIPVCSQLKALNHGKEIHAYAVKN----QFL--P-NVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R------NVISW 482 (681)
Q Consensus 418 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------~~~~~ 482 (681)
.+...+...|++++|...++...+. +.. | ....+..+...+...|++++|...+++... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5666788899999999999987753 222 2 234566678889999999999999987642 1 12357
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--HHHHH----HHHHHhccccchHHHHHHHHHHHHcCCCCC---hhHHH
Q 047571 483 TAMIDSCIENGRLDDALGVFRSMQLSKHRPD--SVAMA----RMLSVSGQLKALKLGKEIHGQVLKKDFASV---PFVAA 553 (681)
Q Consensus 483 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 553 (681)
..+...+...|++++|...+++.....-.++ ..... .....+...|+.+.|...++...+....+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7788889999999999999998875421211 12111 233446788999999999988876432221 22456
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCC----C----Ch-hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047571 554 ENIKMYGMCGFLECAKLVFDAVPV----K----GS-ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI 624 (681)
Q Consensus 554 ~l~~~~~~~g~~~~a~~~~~~~~~----~----~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 624 (681)
.+...+...|++++|...+++... . +. ..+..+..++...|+.++|...+++..... +. ...+..
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~ 331 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISH 331 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHH
Confidence 778889999999999999987654 1 11 256667778888999999999999988742 11 112234
Q ss_pred HhccCCHHHHHHHHHHhhhc
Q 047571 625 CNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 625 ~~~~g~~~~A~~~~~~~~~~ 644 (681)
+...| +....+++.+...
T Consensus 332 ~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHT
T ss_pred HHHcc--HHHHHHHHHHHhC
Confidence 44555 5666677766553
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.09 E-value=2.4e-09 Score=106.70 Aligned_cols=192 Identities=8% Similarity=-0.046 Sum_probs=108.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCC----C-CC-CHHHHHHHHHHhccccchHHHHHHHHHHHHc----CCC-CChh
Q 047571 482 WTAMIDSCIENGRLDDALGVFRSMQLSK----H-RP-DSVAMARMLSVSGQLKALKLGKEIHGQVLKK----DFA-SVPF 550 (681)
Q Consensus 482 ~~~li~~~~~~~~~~~A~~~~~~m~~~g----~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 550 (681)
+..+...|...|++++|+..+++..+.. - .+ ...++..+..+|...|++++|...+.+..+. +.. ....
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444455555544444443210 0 00 1223444444455555555555555444431 100 1133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhCCC-------CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC---CC-CHHHH
Q 047571 551 VAAENIKMYGMCGFLECAKLVFDAVPV-------KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGF---TP-NHFTF 618 (681)
Q Consensus 551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p-~~~~~ 618 (681)
++..+..+|...|++++|...+++... |. ..++..+...+...|++++|...+++..+..- .| ....+
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455566666666666666666665543 11 44567777788888888888888888775321 12 23445
Q ss_pred HHHHHHHhccCC---HHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 619 KVLLSICNQAGF---ADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 619 ~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
..+...+...|+ +.+|+.+++.. +..|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666777777 67777777642 23333 456777888888888888888887764
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.09 E-value=4.1e-09 Score=92.85 Aligned_cols=161 Identities=12% Similarity=0.007 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhc
Q 047571 449 SIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSG 525 (681)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 525 (681)
..+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455556666667777777777766654 234455666666666666666666666665532 222333333333333
Q ss_pred cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHH
Q 047571 526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDK 605 (681)
Q Consensus 526 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 605 (681)
..|++++|...++.+.+... .+...+..+...+...|++++|.+.+++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP--------------------------------INFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc--------------------------------HhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 33444444433333332210 2234556666666677777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 606 MRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 606 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+.+.. +.+...+..+...+...|++++|.+.++.+.+
T Consensus 136 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 136 ALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66642 34566677777777777777777777776654
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.07 E-value=2.7e-09 Score=94.00 Aligned_cols=162 Identities=16% Similarity=0.021 Sum_probs=117.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047571 481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYG 560 (681)
Q Consensus 481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 560 (681)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------- 73 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--------------- 73 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------
Confidence 45555666667777777777777665532 22344444444444555555555555544443210
Q ss_pred hcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047571 561 MCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNV 640 (681)
Q Consensus 561 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (681)
.+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.++++.
T Consensus 74 -----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 74 -----------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp -----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 234567778888889999999999999998863 55788899999999999999999999999
Q ss_pred hhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 641 MSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 641 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
+.+. .+.+...+..++.++.+.|++++|.+++++..
T Consensus 136 ~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 136 ALGL--RPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhc--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8875 23346889999999999999999999998753
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=7e-09 Score=98.93 Aligned_cols=162 Identities=9% Similarity=-0.102 Sum_probs=95.8
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHHhc-CCHHHHHHHhhhCCC--CC-------h
Q 047571 516 AMARMLSVSGQLKALKLGKEIHGQVLKKDF---AS--VPFVAAENIKMYGMC-GFLECAKLVFDAVPV--KG-------S 580 (681)
Q Consensus 516 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~--~~-------~ 580 (681)
+|..+..+|...|++++|...+++.++... .+ ...++..+..+|... |++++|...+++... |+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344444444455555555555544443210 00 133556666677774 777777777766554 11 2
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC----
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH------FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL---- 650 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---- 650 (681)
.+|+.+...+...|++++|+..|++..+....... ..|..+..++...|++++|++.+++..+ +.|+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~ 235 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCc
Confidence 35777788888888888888888888775322111 1566677778888888888888886654 2332
Q ss_pred --hhHHHHHHHHHh--hcCCHHHHHHHHHhccCC
Q 047571 651 --EEHYLIMIDILT--RFGRIEEAHRFREMSSSL 680 (681)
Q Consensus 651 --~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 680 (681)
...+..++.++. ..+++++|++.++++..+
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 112344555553 456788888888776554
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=1.6e-08 Score=100.74 Aligned_cols=298 Identities=10% Similarity=-0.023 Sum_probs=207.2
Q ss_pred CCCCchHHhHHHHHH--HhcCCHHHHHHHHhhcCC------C--ChhhHHHHHHH--HHhCCChHHHH---------HHH
Q 047571 343 YSEELFVRSSLVDMY--CKCRDMNSAWRVFYETEE------R--NEILWTALMSG--YVSNGRLEQAL---------RSI 401 (681)
Q Consensus 343 ~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~------~--~~~~~~~li~~--~~~~~~~~~A~---------~~~ 401 (681)
..|...+-+.+-+.| .+.+++++|..+++++.. . ++..|-.++.. ....+....+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 445566666677777 789999999999887543 1 33344444432 11223333333 556
Q ss_pred HHHHHcCcCCCH-H---HHHHHHHHhhccCChhHHHHHHHHHHHhCC-CC----ChhHHHHHHHHHHhcCChHHHHHHHh
Q 047571 402 AWMQQEGFRPDV-V---TVATVIPVCSQLKALNHGKEIHAYAVKNQF-LP----NVSIITSLMIMYSKCGVLDYSLKLFD 472 (681)
Q Consensus 402 ~~m~~~g~~p~~-~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 472 (681)
+.+.......+. . .+......+...|++++|...++.+.+... .+ ...++..+...|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 665443211111 1 112233346788999999999999876421 12 24567788899999999999998888
Q ss_pred hCCC-----CC-----cchHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCC-CHHHHHHHHHHhccccchHHHHHHH
Q 047571 473 EMEV-----RN-----VISWTAMIDSCIENGRLDDALGVFRSMQLS----KHRP-DSVAMARMLSVSGQLKALKLGKEIH 537 (681)
Q Consensus 473 ~~~~-----~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 537 (681)
+..+ ++ ..+++.+...|...|++++|++.+++..+. +-.+ ...++..+..++...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7653 22 346788889999999999999999988753 1111 1236777888899999999999999
Q ss_pred HHHHHc----CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC---hhhHHHHHHHHHcCCC---hHHHHHH
Q 047571 538 GQVLKK----DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG---SITWTAIIEAYGYNDL---CQEALSL 602 (681)
Q Consensus 538 ~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~---~~~~~~l~~~~~~~~~---~~~a~~~ 602 (681)
++..+. +.+....++..+..+|.+.|++++|...+++... .+ ...++.+...+...++ +++|+..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 998861 2233377888999999999999999999987654 12 3345666677778888 7788887
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 603 FDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 603 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+++ .+..| ....+..+...|...|++++|.+.+++..+
T Consensus 326 ~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 776 33334 345677889999999999999999998765
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.03 E-value=3.6e-09 Score=112.88 Aligned_cols=159 Identities=9% Similarity=-0.037 Sum_probs=82.7
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571 479 VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM 558 (681)
Q Consensus 479 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (681)
...|+.|...|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|...+++.++.+ +-+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3466777777777777777777777776642 2234455555556666666666666666555543 1124444444444
Q ss_pred HHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 047571 559 YGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEA 634 (681)
Q Consensus 559 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 634 (681)
|...|++++|.+.|++..+ | +...|+.+..+|...|++++|++.|++..+. .| +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence 5555555555444444433 2 2334444444444444444444444444442 22 344444444444444444444
Q ss_pred HHHHHHh
Q 047571 635 CRIFNVM 641 (681)
Q Consensus 635 ~~~~~~~ 641 (681)
.+.++++
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.00 E-value=4.9e-09 Score=111.81 Aligned_cols=160 Identities=8% Similarity=0.052 Sum_probs=126.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 047571 447 NVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV 523 (681)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 523 (681)
+...++.|...|.+.|++++|++.|++..+ | +...|..+..+|.+.|++++|++.|++..+.. +-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456788888888888888888888887764 3 45678888888888888888888888887753 3345678888888
Q ss_pred hccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHH
Q 047571 524 SGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEAL 600 (681)
Q Consensus 524 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~ 600 (681)
+...|++++|.+.+++.++.+ +-+...+..+..+|...|++++|...|+++.+ |+ ...|..+...+...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 888888888888888888764 23477788888888888888888888887766 43 667888888888888888888
Q ss_pred HHHHHHHh
Q 047571 601 SLFDKMRN 608 (681)
Q Consensus 601 ~~~~~m~~ 608 (681)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888776
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.97 E-value=2.6e-08 Score=91.20 Aligned_cols=188 Identities=7% Similarity=-0.075 Sum_probs=110.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 047571 447 NVSIITSLMIMYSKCGVLDYSLKLFDEMEV----RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLS 522 (681)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 522 (681)
++..+......+.+.|++++|...|++..+ ++...+..+..++...|++++|++.+++..+.. +-+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 445666667777777777777777776543 445555556777777777777777777777642 223345666666
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC---hhhHHHHHHHH
Q 047571 523 VSGQLKALKLGKEIHGQVLKKDFASVP-------FVAAENIKMYGMCGFLECAKLVFDAVPV--KG---SITWTAIIEAY 590 (681)
Q Consensus 523 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~l~~~~ 590 (681)
++...|++++|...+++..+... .++ ..+..+...+...|++++|...++++.. |+ ...|..+...|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 67777777777777777766532 123 3455556666666666666666666555 22 23444555555
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 591 GYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 591 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
... +..+++++...+ ..+...|.... ....+.+++|+..+++..+.
T Consensus 164 ~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 332 233344444432 22333333222 23345567888888877653
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=8.1e-09 Score=98.07 Aligned_cols=217 Identities=11% Similarity=0.077 Sum_probs=137.3
Q ss_pred hcCChHHHHHHHhhCC-------CCC----cchHHHHHHHHHhcCChhHHHHHHHHhHhC------CCCC-CHHHHHHHH
Q 047571 460 KCGVLDYSLKLFDEME-------VRN----VISWTAMIDSCIENGRLDDALGVFRSMQLS------KHRP-DSVAMARML 521 (681)
Q Consensus 460 ~~g~~~~a~~~~~~~~-------~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll 521 (681)
..|++++|+.++++.. .++ ..++..+...|...|++++|+..+++..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3455555555554433 222 346778888899999999999999888764 2222 244677788
Q ss_pred HHhccccchHHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC--------C---hhhH
Q 047571 522 SVSGQLKALKLGKEIHGQVLKK------DF-ASVPFVAAENIKMYGMCGFLECAKLVFDAVPVK--------G---SITW 583 (681)
Q Consensus 522 ~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---~~~~ 583 (681)
..+...|++++|...+.+..+. .. +.....+..+...|...|++++|...++++..- + ..++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888889999999888887754 11 223566777778888888888888877765431 1 3466
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHhccCC------HHHHHHHHHHhhhcCCCCC
Q 047571 584 TAIIEAYGYNDLCQEALSLFDKMRNG-------GFTP-NHFTFKVLLSICNQAGF------ADEACRIFNVMSRGYKIEA 649 (681)
Q Consensus 584 ~~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~ 649 (681)
..+...|...|++++|+..+++..+. ...+ ....+..+.......+. +..+...++... ...|
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 249 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK---VDSP 249 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC---CCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---CCCH
Confidence 77777788888888888888877653 1122 22233333333333222 223333332111 1223
Q ss_pred -ChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 650 -LEEHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 650 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
....+..++.+|.+.|++++|.+++++...
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 256788999999999999999999987643
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.96 E-value=1.9e-08 Score=92.15 Aligned_cols=190 Identities=9% Similarity=0.024 Sum_probs=139.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047571 477 RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENI 556 (681)
Q Consensus 477 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 556 (681)
.|+..+......+...|++++|+..|++..+..-.++...+..+..++...|++++|...++...+.+. .+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 355677788888999999999999999998875447777777788888899999999999999887542 2577788888
Q ss_pred HHHHhcCCHHHHHHHhhhCCC--CC-h-------hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 047571 557 KMYGMCGFLECAKLVFDAVPV--KG-S-------ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN---HFTFKVLLS 623 (681)
Q Consensus 557 ~~~~~~g~~~~a~~~~~~~~~--~~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~ 623 (681)
.+|...|++++|...+++... |+ . ..|..+...+...|++++|++.|++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 889999999999998887766 43 3 45777778888889999999999988874 454 566777777
Q ss_pred HHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 624 ICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
++...| ..+++.+... + ..+...|.... ....|.+++|+..+++..
T Consensus 162 ~~~~~~-----~~~~~~a~~~-~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPL-A-SSNKEKYASEK--AKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHHHHH-----HHHHHHHGGG-T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhc-c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 776554 3344544442 1 11233343332 334566899999888754
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=3.1e-08 Score=81.74 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 047571 552 AAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA 628 (681)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 628 (681)
+..+...+...|++++|..+++++.. .+...|..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 34445555555666666655555433 234556666777777777777777777777653 44566777777777778
Q ss_pred CCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 629 GFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 629 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
|++++|.++++.+.+. .+.+...+..++.++.+.|++++|.+.++++
T Consensus 83 ~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 83 GDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 8888888887777653 1223566777777778888888887777765
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.86 E-value=7e-08 Score=91.49 Aligned_cols=159 Identities=12% Similarity=-0.012 Sum_probs=99.7
Q ss_pred cCChhHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh------CC-CCchhHHHHHHH
Q 047571 85 QNKLKEALVILDYMDQ-------QGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRIN------GL-ENNGFLRTKLVK 150 (681)
Q Consensus 85 ~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~ 150 (681)
.|+++.|+..|++..+ .+.+....++..+...+...|++++|...+++..+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4555555555555433 333345678889999999999999999999998865 22 234567888889
Q ss_pred HhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhH
Q 047571 151 MYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGL 230 (681)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 230 (681)
.|...|++++|.+.+++ ++.++++......+....++..+...+...|++++|.
T Consensus 94 ~~~~~g~~~~A~~~~~~--------------------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKR--------------------------ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HHHTTTCHHHHHHHHHH--------------------------HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHhccHHHHHHHHHH--------------------------HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999887763 2333322211111223446777777888888888888
Q ss_pred HHHHHHHHh------CCCC-CcHHHhHHHHHHHhcCChHHHHHHHh
Q 047571 231 KTHALLIKN------GFVD-YLILRTSLIDMYFKCGKIKLARRVFD 269 (681)
Q Consensus 231 ~~~~~~~~~------g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 269 (681)
..++...+. +-.| ...++..+...|...|++++|...++
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYK 193 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888777654 1011 12344444444445555555544444
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.83 E-value=7.5e-08 Score=90.17 Aligned_cols=211 Identities=9% Similarity=0.023 Sum_probs=135.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCC-HHHH
Q 047571 446 PNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKH-RPD-SVAM 517 (681)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~ 517 (681)
.+...+-.+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3455566677777888888888888888765 33 34566777788888888888888888877521 112 3345
Q ss_pred HHHHHHhcc--------ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHH
Q 047571 518 ARMLSVSGQ--------LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEA 589 (681)
Q Consensus 518 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 589 (681)
..+..++.. .|++++|...++++++.... ++.....+.......+.. ...+..+...
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~--------------~~~~~~la~~ 157 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKL--------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHH--------------HHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 555566666 77888888888877765322 122222211111100000 1124567788
Q ss_pred HHcCCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHhcc----------CCHHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 047571 590 YGYNDLCQEALSLFDKMRNGGFT-P-NHFTFKVLLSICNQA----------GFADEACRIFNVMSRGYKIEAL-EEHYLI 656 (681)
Q Consensus 590 ~~~~~~~~~a~~~~~~m~~~g~~-p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ 656 (681)
|...|++++|+..|+++.+.... + ....+..+..+|... |++++|++.++.+.+...-.|. ......
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 237 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEEL 237 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 89999999999999999885311 1 245677888888766 8999999999998876332222 344555
Q ss_pred HHHHHhhcCCHHHHH
Q 047571 657 MIDILTRFGRIEEAH 671 (681)
Q Consensus 657 l~~~~~~~g~~~~A~ 671 (681)
+..++.+.|+++++.
T Consensus 238 l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 238 YTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHhhhhh
Confidence 666666666665543
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=1.2e-07 Score=89.95 Aligned_cols=160 Identities=10% Similarity=-0.061 Sum_probs=121.6
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhHHH-HHHHHH
Q 047571 515 VAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSITWTA-IIEAYG 591 (681)
Q Consensus 515 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-l~~~~~ 591 (681)
..+..+...+...|++++|...++++.+.. +-++..+..+..+|...|++++|...++++.. |+...... ....+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 344445555556666666666666666543 22467788889999999999999999999887 55433322 233466
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHH
Q 047571 592 YNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAH 671 (681)
Q Consensus 592 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 671 (681)
..++.++|+..+++..+.. +.+...+..+...+...|++++|++.++++.+...-..+...+..++.+|...|+.++|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 7788899999999998863 557889999999999999999999999999875222223678999999999999999998
Q ss_pred HHHHh
Q 047571 672 RFREM 676 (681)
Q Consensus 672 ~~~~~ 676 (681)
..+++
T Consensus 276 ~~~r~ 280 (287)
T 3qou_A 276 SXYRR 280 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.82 E-value=2.9e-07 Score=85.66 Aligned_cols=176 Identities=12% Similarity=0.068 Sum_probs=95.1
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHhhhCC
Q 047571 498 ALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDF-ASVPFVAAENIKMYGMCGFLECAKLVFDAVP 576 (681)
Q Consensus 498 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 576 (681)
|+..+++..+.+ .++..++..+..++...|++++|.+++.+.+..+. .-+...+..++++|.+.|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444333 33333333444444445555555555554443332 1234555556666666666666666666654
Q ss_pred C--C-----ChhhHHHHHHH--HH--cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC
Q 047571 577 V--K-----GSITWTAIIEA--YG--YNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGY 645 (681)
Q Consensus 577 ~--~-----~~~~~~~l~~~--~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 645 (681)
. | +..+...|+.+ .. ..+++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+..
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 3 12233333333 22 234788888888887664 4553333444447778888888888887665431
Q ss_pred C---C----CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 646 K---I----EA-LEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 646 ~---~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
. . .| ++.++..+|.+....|+ +|.++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~ 280 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV 280 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence 0 0 13 35566555556655676 6777776654
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.81 E-value=5.5e-08 Score=104.44 Aligned_cols=182 Identities=10% Similarity=-0.061 Sum_probs=126.8
Q ss_pred HhcCChhHHHHHHHHhH--------hCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047571 490 IENGRLDDALGVFRSMQ--------LSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM 561 (681)
Q Consensus 490 ~~~~~~~~A~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 561 (681)
...|++++|++.+++.. +. -+.+...+..+..++...|++++|...++++++.+ +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55677777777777776 22 13334556666667777777777777777777653 2346677777778888
Q ss_pred cCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047571 562 CGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIF 638 (681)
Q Consensus 562 ~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (681)
.|++++|...|+++.. | +...|..+..++...|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|++.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888877665 3 36678888888888888888 88888888753 346778888888888888888888888
Q ss_pred HHhhhcCCCCCC-hhHHHHHHHHHhhcCC--------HHHHHHHHHhcc
Q 047571 639 NVMSRGYKIEAL-EEHYLIMIDILTRFGR--------IEEAHRFREMSS 678 (681)
Q Consensus 639 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~ 678 (681)
++.. ...|+ ...+..+..++...|+ +++|.+.+++++
T Consensus 558 ~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 558 DEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred Hhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 8554 34565 5667777777766444 666776666554
No 93
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.77 E-value=1.3e-07 Score=90.85 Aligned_cols=199 Identities=11% Similarity=-0.013 Sum_probs=96.9
Q ss_pred CCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhc-cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047571 391 NGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQ-LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLK 469 (681)
Q Consensus 391 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (681)
.|++++|.+++++..+.. +. .+.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 345666666666555431 10 1222 45566665555443 345556677777666
Q ss_pred HHhhCCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCC---CCC--HHHHHHHHHHhccccchHHHHH
Q 047571 470 LFDEMEV-----RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKH---RPD--SVAMARMLSVSGQLKALKLGKE 535 (681)
Q Consensus 470 ~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~~~~~~a~~ 535 (681)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.-. .+. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 6655432 11 22455556666666666666666665543200 111 1233344444444 45555554
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CC
Q 047571 536 IHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNG----GF 611 (681)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~ 611 (681)
.+++.++...... +.. .-..+++.+...|...|++++|+..|++..+. +.
T Consensus 137 ~~~~Al~~~~~~~---------------~~~-----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 137 LYQQAAAVFENEE---------------RLR-----------QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHTT---------------CHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC---------------Chh-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 4444432100000 000 00234556666666666666666666666542 11
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571 612 TPN-HFTFKVLLSICNQAGFADEACRIFNVMS 642 (681)
Q Consensus 612 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (681)
.++ ...+..++.++...|++++|.+.|++..
T Consensus 191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 111 1244455555566667777777666554
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=1.1e-07 Score=82.67 Aligned_cols=149 Identities=14% Similarity=0.036 Sum_probs=101.7
Q ss_pred cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhHHHHHHH-HHcCCChHHHHHH
Q 047571 526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSITWTAIIEA-YGYNDLCQEALSL 602 (681)
Q Consensus 526 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~-~~~~~~~~~a~~~ 602 (681)
..|++++|...++...+.. +.++..+..+..+|...|++++|...++++.. |+...+..+... +...++..+|+..
T Consensus 18 ~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~ 96 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKR 96 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHH
Confidence 3344444444444333321 22456677778888888888888888888776 433222222212 1222334457889
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 603 FDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 603 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
+++..+.. +.+...+..+..++...|++++|++.|+++.+. ...+ +...+..++.++...|+.++|...+++.
T Consensus 97 ~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 97 LEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKV-NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 99988852 336888999999999999999999999988764 3322 3568889999999999999999988764
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.76 E-value=3.2e-07 Score=87.39 Aligned_cols=210 Identities=9% Similarity=-0.050 Sum_probs=110.8
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CcCCC-HHHHHHHHHHhhccCChhHHHHHH
Q 047571 362 DMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQE----GFRPD-VVTVATVIPVCSQLKALNHGKEIH 436 (681)
Q Consensus 362 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 436 (681)
++++|...|.. ....|...|++++|...|.+..+. |-.++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36666665544 345566777777777777766442 21111 345566666666667777776666
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhc-CChhHHHHHHHHhHhCCCC-CC-
Q 047571 437 AYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIEN-GRLDDALGVFRSMQLSKHR-PD- 513 (681)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~-p~- 513 (681)
+...+.. ...|+...+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 6655421 111111111 11334444455553 5555555555554432100 00
Q ss_pred ---HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCCh------hHHHHHHHHHHhcCCHHHHHHHhhhCCC--CCh--
Q 047571 514 ---SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVP------FVAAENIKMYGMCGFLECAKLVFDAVPV--KGS-- 580 (681)
Q Consensus 514 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-- 580 (681)
..++..+...+...|++++|...+++..+....... ..+..+..++...|++++|...+++... |+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 224455555566666666666666665554322211 1455666677777777777777777665 321
Q ss_pred ----hhHHHHHHHHH--cCCChHHHHHHHHHHHh
Q 047571 581 ----ITWTAIIEAYG--YNDLCQEALSLFDKMRN 608 (681)
Q Consensus 581 ----~~~~~l~~~~~--~~~~~~~a~~~~~~m~~ 608 (681)
..+..++.++. ..+++++|+..|+++..
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 12334455554 35667778777776654
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.73 E-value=2.2e-07 Score=87.00 Aligned_cols=167 Identities=11% Similarity=0.037 Sum_probs=108.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----HHHHHHHHHHhccccchHHHHHHHHHHHHcCCC--CChhH
Q 047571 478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPD----SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA--SVPFV 551 (681)
Q Consensus 478 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 551 (681)
+...+-.+...+.+.|++++|+..|+++.+.. |+ ...+..+..++...|+++.|...++.+++.... ..+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~- 90 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ- 90 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH-
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH-
Confidence 44555666667777788888888888777643 32 345555556666666666666666666654221 1122
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHc--------CCChHHHHHHHHHHHhCCCCCCHHH------
Q 047571 552 AAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGY--------NDLCQEALSLFDKMRNGGFTPNHFT------ 617 (681)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~~~------ 617 (681)
.+..+..++.. .|++++|+..|+++.+.. +.+...
T Consensus 91 ------------------------------a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~ 139 (261)
T 3qky_A 91 ------------------------------AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK 139 (261)
T ss_dssp ------------------------------HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH
Confidence 33344444444 566666666666665531 112222
Q ss_pred -----------HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc----------CCHHHHHHHHH
Q 047571 618 -----------FKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRF----------GRIEEAHRFRE 675 (681)
Q Consensus 618 -----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~ 675 (681)
+..+...|.+.|++++|+..|+.+.+...-.+ ....+..++.+|.+. |++++|+..++
T Consensus 140 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 219 (261)
T 3qky_A 140 IRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE 219 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence 25678889999999999999999987633333 356788888999876 89999999988
Q ss_pred hcc
Q 047571 676 MSS 678 (681)
Q Consensus 676 ~~~ 678 (681)
++.
T Consensus 220 ~~~ 222 (261)
T 3qky_A 220 RLL 222 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.72 E-value=3.1e-07 Score=75.53 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=88.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047571 481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYG 560 (681)
Q Consensus 481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 560 (681)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|+++.|...++.+.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------- 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------- 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---------------
Confidence 45566667777777777777777776543 22344444455555555555555555555444321
Q ss_pred hcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047571 561 MCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNV 640 (681)
Q Consensus 561 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (681)
.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.+++
T Consensus 67 -----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 67 -----------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp -----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -----------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 224466777788888888999998888888753 44677888888889999999999999888
Q ss_pred hhhc
Q 047571 641 MSRG 644 (681)
Q Consensus 641 ~~~~ 644 (681)
+.+.
T Consensus 129 ~~~~ 132 (136)
T 2fo7_A 129 ALEL 132 (136)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 7653
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.72 E-value=3.2e-07 Score=83.47 Aligned_cols=184 Identities=11% Similarity=0.076 Sum_probs=114.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CC-HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCC--hhHHHHH
Q 047571 480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHR-PD-SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASV--PFVAAEN 555 (681)
Q Consensus 480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 555 (681)
..+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++...|++++|...++.+++...... +..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34555667788899999999999998875321 11 34667777888888999999999998887643322 1234444
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-HHHH----------------
Q 047571 556 IKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN-HFTF---------------- 618 (681)
Q Consensus 556 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~---------------- 618 (681)
..++...|.. .+ ..|..+...+...|++++|+..|+++.+. .|+ ...+
T Consensus 85 g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 85 GLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHH
Confidence 4444432210 00 01222223334456677777777777664 232 2221
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 619 -KVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 619 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
..+...+.+.|++++|+..|+.+.+...-.|. ...+..++.+|.+.|+.++|++.++.+.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 24556778889999999999888775322221 3568888888999999999988887653
No 99
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.70 E-value=4.3e-07 Score=81.89 Aligned_cols=123 Identities=13% Similarity=-0.060 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 047571 554 ENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADE 633 (681)
Q Consensus 554 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 633 (681)
.+...+...|++++|...+++...++...|..+...|...|++++|++.+++..+.. +.+...+..+..++...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 344455556666666666666655555566666666666666666666666666542 3355556666666666666666
Q ss_pred HHHHHHHhhhcCC-------------CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 634 ACRIFNVMSRGYK-------------IEAL-EEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 634 A~~~~~~~~~~~~-------------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
|++.++...+... ..|+ ...+..++.+|.+.|++++|.+.+++.
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666665554211 1111 245566666666666666666666554
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.68 E-value=1.8e-06 Score=80.38 Aligned_cols=173 Identities=10% Similarity=-0.010 Sum_probs=99.5
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHH
Q 047571 354 VDMYCKCRDMNSAWRVFYETEERNE-ILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHG 432 (681)
Q Consensus 354 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 432 (681)
|+-..-.|.+..++.-...+...+. ..-.-+.++++..|+++.. ..-.|....+..+...+ ..+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 4445557888888776555543322 2223345777777776531 11233333333333333 222 5
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----CcchHHHHHHHHHhcCChhHHHHHHHHhHh
Q 047571 433 KEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR-----NVISWTAMIDSCIENGRLDDALGVFRSMQL 507 (681)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 507 (681)
...+++....+ .++..++..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56666655544 344455556777777788888888888776432 334566667777888888888888888766
Q ss_pred CCCCC-----CHHHHHHHHHHhc--ccc--chHHHHHHHHHHHHc
Q 047571 508 SKHRP-----DSVAMARMLSVSG--QLK--ALKLGKEIHGQVLKK 543 (681)
Q Consensus 508 ~g~~p-----~~~~~~~ll~~~~--~~~--~~~~a~~~~~~~~~~ 543 (681)
. .| +..+...+..++. ..| +...|..+|+++.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~ 207 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT 207 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 3 45 2455555554422 223 666777777766543
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.64 E-value=5.9e-05 Score=77.01 Aligned_cols=363 Identities=10% Similarity=-0.026 Sum_probs=199.1
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCC-hHHHHHHHh
Q 047571 191 YRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGK-IKLARRVFD 269 (681)
Q Consensus 191 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~~~ 269 (681)
+..|..+|+.+... -|. |+.+.+.++|+..... .|+...|...+....+.++ .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55666666665543 222 7888888888887763 4677787777776666553 234445554
Q ss_pred ccC------CCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhh---hhhhcccchhhhh
Q 047571 270 ETG------DRDIVVWGSMIAGFA----HNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGE---AWARKLGQEVHAY 336 (681)
Q Consensus 270 ~~~------~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~ 336 (681)
... ..+...|...+..+. ..++.+.+..+|++.+.. |.. .+..+-..|.. ......+..+...
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 432 124566666665443 245677788888887762 211 11111111111 1111111111111
Q ss_pred hhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhCC--C-----hHHHHHHHHHHH
Q 047571 337 VLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE----RNEILWTALMSGYVSNG--R-----LEQALRSIAWMQ 405 (681)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~--~-----~~~A~~~~~~m~ 405 (681)
. .+.+..|..+++.+.. .+...|...+.--...+ - .+.+..+|+++.
T Consensus 149 ~----------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al 206 (493)
T 2uy1_A 149 T----------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL 206 (493)
T ss_dssp H----------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred H----------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH
Confidence 0 0112222222222211 12334544444322221 1 244667888877
Q ss_pred HcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH-HHHHhhCC---------
Q 047571 406 QEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYS-LKLFDEME--------- 475 (681)
Q Consensus 406 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~--------- 475 (681)
... +-+...|...+.-+.+.|+.+.|..+++..... +.+...+.. |....+.++. ..+.+...
T Consensus 207 ~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 207 DSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp HHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC---------
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhh
Confidence 653 344566666666677888999999999998887 333333322 2221111111 11222111
Q ss_pred -C--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc-ccchHHHHHHHHHHHHcCCCCChhH
Q 047571 476 -V--RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ-LKALKLGKEIHGQVLKKDFASVPFV 551 (681)
Q Consensus 476 -~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~ 551 (681)
. .....|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...+.- +-++..
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~ 356 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLL 356 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHH
Confidence 0 01134566666666778899999999988 321 2344444322211112 236889999999888753 234556
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 552 AAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
+...++...+.|+.+.|..+|+.+.. ....|...+..-...|+.+.+.++++++.+
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677777888999999999988843 456677777776778888888888887763
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.64 E-value=7.2e-06 Score=83.80 Aligned_cols=121 Identities=11% Similarity=0.068 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhCCCCC--hhhHHHHHHHHHc-CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571 550 FVAAENIKMYGMCGFLECAKLVFDAVPVKG--SITWTAIIEAYGY-NDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN 626 (681)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 626 (681)
.+|...+..+.+.+..+.|..+|+++..|+ ...|-..+..-.. .++.+.|..+|+...+. ++-++..+...++...
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 456666777777788999999998884343 2233222221112 34699999999998875 2334555666777778
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 627 QAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 627 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
+.|+.+.|..+|+.+.+ ....|...++.-.+.|+.+.+.+++++.
T Consensus 366 ~~~~~~~aR~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 366 RIGDEENARALFKRLEK------TSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHTCHHHHHHHHHHSCC------BHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999997632 3577888887778889999998887765
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.64 E-value=8.6e-08 Score=80.73 Aligned_cols=140 Identities=8% Similarity=-0.046 Sum_probs=103.8
Q ss_pred HHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHH
Q 047571 522 SVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQE 598 (681)
Q Consensus 522 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 598 (681)
..+...|++++|+..+....... +-.+..+..+..+|.+.|++++|...|+++.. | +..+|..+...|...|++++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 44555677777777776665431 11244556778888888999999988887766 3 47789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH-HHHhhhcCCCCCC-hhHHHHHHHHHhhcCC
Q 047571 599 ALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRI-FNVMSRGYKIEAL-EEHYLIMIDILTRFGR 666 (681)
Q Consensus 599 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 666 (681)
|+..|++..+.. +-+...+..+...|.+.|++++|.+. +++..+. .|+ +..|.....++.+.|+
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhCc
Confidence 999999999853 33688899999999999998877665 4766653 453 6778877888877775
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.63 E-value=5.1e-07 Score=80.94 Aligned_cols=132 Identities=8% Similarity=-0.120 Sum_probs=75.0
Q ss_pred HHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCC-
Q 047571 520 MLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDL- 595 (681)
Q Consensus 520 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~- 595 (681)
+..++...|++++|...+++.++.. +-++..+..+..+|...|++++|...|+++.. | +..+|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 4555556666666666666666543 22455666666677777777777777766655 3 35566666666654432
Q ss_pred -hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHH
Q 047571 596 -CQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIM 657 (681)
Q Consensus 596 -~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 657 (681)
.+.+...+++... ..|....+..+..++...|++++|++.|++..+ ..|+......+
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~l 196 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHHHH
Confidence 3444555555432 223333444455566667778888888876653 45655444433
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.62 E-value=4.1e-07 Score=81.56 Aligned_cols=173 Identities=14% Similarity=-0.003 Sum_probs=120.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047571 484 AMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCG 563 (681)
Q Consensus 484 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 563 (681)
.....+...|++++|+..|++..+. .|+........ .... .....+.....+..+|.+.|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~-----------------~~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDK-----------------NSEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCT-----------------TSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcc-----------------hhhhhHHHHHHHHHHHHHCC
Confidence 3445677888899999888888764 34432211110 0000 01112333445888999999
Q ss_pred CHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH--HHHHHHH
Q 047571 564 FLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFA--DEACRIF 638 (681)
Q Consensus 564 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~--~~A~~~~ 638 (681)
++++|...+++... | +...|..+...+...|++++|+..|++..+.. +.+...+..+..+|...|+. +.+...+
T Consensus 69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999998877 4 47789999999999999999999999999953 44788899999888776643 3445555
Q ss_pred HHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccCC
Q 047571 639 NVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSSL 680 (681)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 680 (681)
+... ...|....+..+..++...|++++|++.+++...+
T Consensus 148 ~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 148 KKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4332 23333344556677888899999999999986543
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.60 E-value=2.6e-06 Score=76.43 Aligned_cols=158 Identities=9% Similarity=-0.026 Sum_probs=99.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcccc----chHHHHHHHHHHHHcCCCCChhHHH
Q 047571 478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLK----ALKLGKEIHGQVLKKDFASVPFVAA 553 (681)
Q Consensus 478 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 553 (681)
+...+..+...|...+++++|++.|++..+.| +...+..+-..|.. + +.++|...+++..+.+ ++..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34445555555555666666666666666544 33444445455554 4 6666666666665543 455566
Q ss_pred HHHHHHHh----cCCHHHHHHHhhhCCCCC-----hhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047571 554 ENIKMYGM----CGFLECAKLVFDAVPVKG-----SITWTAIIEAYGY----NDLCQEALSLFDKMRNGGFTPNHFTFKV 620 (681)
Q Consensus 554 ~l~~~~~~----~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 620 (681)
.+..+|.. .+++++|...|++....+ ..++..|...|.. .+++++|+..|++..+. +.+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 66666665 667777777777766622 4677777777776 67788888888888775 234445666
Q ss_pred HHHHHhcc-C-----CHHHHHHHHHHhhhc
Q 047571 621 LLSICNQA-G-----FADEACRIFNVMSRG 644 (681)
Q Consensus 621 l~~~~~~~-g-----~~~~A~~~~~~~~~~ 644 (681)
|...|... | ++++|.++|+...+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 66666543 2 788888888877664
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.60 E-value=2.1e-06 Score=77.12 Aligned_cols=172 Identities=8% Similarity=-0.112 Sum_probs=140.6
Q ss_pred hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC----CHHHHHHH
Q 047571 496 DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCG----FLECAKLV 571 (681)
Q Consensus 496 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~ 571 (681)
.+|++.|++..+.| +...+..+-..+...+++++|...|++..+.+ ++..+..+..+|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888764 66777778888888999999999999999865 67788889999988 7 89999999
Q ss_pred hhhCCCC-ChhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhc----cCCHHHHHHHHHHh
Q 047571 572 FDAVPVK-GSITWTAIIEAYGY----NDLCQEALSLFDKMRNGGFT-PNHFTFKVLLSICNQ----AGFADEACRIFNVM 641 (681)
Q Consensus 572 ~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 641 (681)
|++...+ +..++..|...|.. .+++++|+++|++..+.|.. .++..+..|...|.. .+++++|+++|++.
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9988774 47788888888887 88999999999999987521 127788888888988 88999999999988
Q ss_pred hhcCCCCCChhHHHHHHHHHhhc-C-----CHHHHHHHHHhc
Q 047571 642 SRGYKIEALEEHYLIMIDILTRF-G-----RIEEAHRFREMS 677 (681)
Q Consensus 642 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~ 677 (681)
.+. ..+...+..|..+|... | +.++|.+++++.
T Consensus 156 ~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 156 SSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred HHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 764 23445778888888654 3 899999999864
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.58 E-value=6.3e-07 Score=96.21 Aligned_cols=168 Identities=10% Similarity=-0.057 Sum_probs=113.2
Q ss_pred hccCChhHHHHHHHHHH--------HhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhc
Q 047571 424 SQLKALNHGKEIHAYAV--------KNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIEN 492 (681)
Q Consensus 424 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~ 492 (681)
...|++++|.+.++... +.. +.+...+..+...+.+.|++++|.+.|+++.+ | +...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66777888888887776 322 34556677777777788888888888877664 3 455677777777788
Q ss_pred CChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHh
Q 047571 493 GRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVF 572 (681)
Q Consensus 493 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (681)
|++++|++.|++..+.. +-+...+..+..++...|++++ ...++++++.+ +.+...+..+..+|.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888777653 2244566667777777777777 77777777654 224566777777777777777777777
Q ss_pred hhCCC--CC-hhhHHHHHHHHHcCCC
Q 047571 573 DAVPV--KG-SITWTAIIEAYGYNDL 595 (681)
Q Consensus 573 ~~~~~--~~-~~~~~~l~~~~~~~~~ 595 (681)
+++.. |+ ...|..+..++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 77766 33 4456666666655444
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.57 E-value=6e-07 Score=94.69 Aligned_cols=150 Identities=10% Similarity=-0.062 Sum_probs=107.5
Q ss_pred cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047571 492 NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLV 571 (681)
Q Consensus 492 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 571 (681)
.|++++|++.+++..+.. +-+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887653 3346778888888888999999999999888764 23577888888899999999999999
Q ss_pred hhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHhhhc
Q 047571 572 FDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA---GFADEACRIFNVMSRG 644 (681)
Q Consensus 572 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 644 (681)
+++... | +...|..+...|...|++++|++.+++..+.. +.+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 887766 3 46678888888999999999999999988853 34677888888888888 8999999999888765
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.56 E-value=3.9e-07 Score=87.47 Aligned_cols=195 Identities=10% Similarity=-0.063 Sum_probs=130.5
Q ss_pred cCChHHHHHHHhhCCCCCcchHHHHHHHHHh-cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHH
Q 047571 461 CGVLDYSLKLFDEMEVRNVISWTAMIDSCIE-NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQ 539 (681)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 539 (681)
.|++++|.+++++..+..... +.+ .+++++|...|.+. ...|...|++++|...+.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~-------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS-------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc-------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 467778888777654311100 111 35566666665544 3345566777777777766
Q ss_pred HHHcCC---C--CChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHH
Q 047571 540 VLKKDF---A--SVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWTAIIEAYGYNDLCQEALSLFDK 605 (681)
Q Consensus 540 ~~~~~~---~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 605 (681)
..+... . .....+..+..+|...|++++|...+++... .+ ..+++.+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 554211 0 1134666777778888888777777765443 11 3467888888888 999999999999
Q ss_pred HHhCC----CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC---CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 606 MRNGG----FTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGY---KIEAL-EEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 606 m~~~g----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
..+.. -.+ ...++..+...+.+.|++++|++.|++..+.. +..+. ...+..++.++...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87631 111 14678889999999999999999999886631 12122 33677788888899999999999988
Q ss_pred cc
Q 047571 677 SS 678 (681)
Q Consensus 677 ~~ 678 (681)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.56 E-value=1.2e-06 Score=76.08 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH-hcc
Q 047571 451 ITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV-SGQ 526 (681)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~ 526 (681)
+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|+..+++..... |+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44556677788888888888888775 345677778888888888888888888876643 343322211111 111
Q ss_pred ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 047571 527 LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKM 606 (681)
Q Consensus 527 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 606 (681)
.+....+...++...+.. | .+...+..+...+...|++++|+..|+++
T Consensus 87 ~~~~~~a~~~~~~al~~~--P------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN--P------------------------------DNFELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS--T------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHhC--C------------------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 112222344444444332 1 12445666666777777777777777777
Q ss_pred HhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571 607 RNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMS 642 (681)
Q Consensus 607 ~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (681)
.+....+ +...+..+..++...|+.++|...|++..
T Consensus 135 l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 135 LKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 7643221 24566677777777777777777776554
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.54 E-value=3.3e-06 Score=76.73 Aligned_cols=180 Identities=8% Similarity=0.010 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCc----chHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CCH-HHHHH
Q 047571 448 VSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNV----ISWTAMIDSCIENGRLDDALGVFRSMQLSKHR-PDS-VAMAR 519 (681)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~-~~~~~ 519 (681)
...+-.+...+.+.|++++|...|+++.+ |+. ..+..+..+|.+.|++++|+..|+++.+..-. +.. ..+-.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455667788999999999999999875 432 36777889999999999999999999875322 111 13333
Q ss_pred HHHHhcc------------------ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChh
Q 047571 520 MLSVSGQ------------------LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSI 581 (681)
Q Consensus 520 ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 581 (681)
+..++.. .|+.++|...++.+++.... ++........+..-.+... .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~--------------~ 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLA--------------K 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHH--------------H
Confidence 3333332 45677777777777664311 1222211111100000000 0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CH---HHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NH---FTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
..-.+...|...|++++|+..|+++.+. .| +. ..+..+..++.+.|++++|++.++.+...
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 1234566788899999999999999985 34 33 56888999999999999999999988764
No 113
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=1.2e-06 Score=75.22 Aligned_cols=124 Identities=11% Similarity=-0.077 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 047571 551 VAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ 627 (681)
Q Consensus 551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 627 (681)
.+..+...+...|++++|...+++... .+...|..+...+...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344455556666666666666665544 235567777777777888888888888877753 4466777777778888
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCChhHH--HHHHHHHhhcCCHHHHHHHHHhc
Q 047571 628 AGFADEACRIFNVMSRGYKIEALEEHY--LIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 628 ~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
.|++++|.+.+++..+.... +...+ ..++..+.+.|++++|.+.+++.
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 88888888888877664222 23333 33444467778888888777654
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.49 E-value=4.9e-07 Score=75.62 Aligned_cols=92 Identities=12% Similarity=-0.020 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 047571 551 VAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ 627 (681)
Q Consensus 551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 627 (681)
.+..+...+.+.|++++|...|+++.. | +...|..+..+|...|++++|+..|++..+.. +.++..|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 344444455555555555555554443 2 24445555555555555555555555555431 2234445555555555
Q ss_pred cCCHHHHHHHHHHhhh
Q 047571 628 AGFADEACRIFNVMSR 643 (681)
Q Consensus 628 ~g~~~~A~~~~~~~~~ 643 (681)
.|++++|++.|+...+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555554443
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.49 E-value=1.8e-06 Score=90.94 Aligned_cols=158 Identities=11% Similarity=-0.024 Sum_probs=118.2
Q ss_pred cCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHH
Q 047571 461 CGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIH 537 (681)
Q Consensus 461 ~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 537 (681)
.|++++|.+.+++..+ | +...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 3 45688889999999999999999999998864 445778888899999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcC---CChHHHHHHHHHHHhCCC
Q 047571 538 GQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYN---DLCQEALSLFDKMRNGGF 611 (681)
Q Consensus 538 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~g~ 611 (681)
++..+.. +.+...+..+..+|...|++++|.+.+++... | +...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~- 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG- 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT-
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC-
Confidence 9999875 33578899999999999999999999998776 3 467888899999999 99999999999998864
Q ss_pred CCCHHHHHHH
Q 047571 612 TPNHFTFKVL 621 (681)
Q Consensus 612 ~p~~~~~~~l 621 (681)
+.+...|..+
T Consensus 159 p~~~~~~~~l 168 (568)
T 2vsy_A 159 VGAVEPFAFL 168 (568)
T ss_dssp CCCSCHHHHT
T ss_pred CcccChHHHh
Confidence 3334444443
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.48 E-value=4.9e-06 Score=78.78 Aligned_cols=163 Identities=8% Similarity=0.001 Sum_probs=111.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCcc-HHHHHH-
Q 047571 104 PVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYP-WNALLR- 181 (681)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ll~- 181 (681)
+.+...+..+...+...|++++|...|++..... +.+...+..+...+.+.|++++|.+.++++...++.. +..+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 4566777888888899999999999999999887 6677888899999999999999999999876433322 222222
Q ss_pred -HHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCC-CcHHHhHHHHHHHhcC
Q 047571 182 -GAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVD-YLILRTSLIDMYFKCG 259 (681)
Q Consensus 182 -~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~ 259 (681)
.+...+ +.+.++..+++..+.. +.+...+..+...+...|++++|...+..+.+..... +...+..+...+...|
T Consensus 193 ~~l~~~~--~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQA--ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHH--TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhc--ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 233444 6666777777666553 2344566666667777777777777777776654221 2455666666666666
Q ss_pred ChHHHHHHHhc
Q 047571 260 KIKLARRVFDE 270 (681)
Q Consensus 260 ~~~~a~~~~~~ 270 (681)
+.++|...+++
T Consensus 270 ~~~~a~~~~r~ 280 (287)
T 3qou_A 270 TGDALASXYRR 280 (287)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 66666665543
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=1.8e-05 Score=75.16 Aligned_cols=157 Identities=8% Similarity=-0.005 Sum_probs=82.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCC-CCCHH----HHHHHHHHhccccchHHHHHHHHHHHHcCCCCC-----hhHHHH
Q 047571 485 MIDSCIENGRLDDALGVFRSMQLSKH-RPDSV----AMARMLSVSGQLKALKLGKEIHGQVLKKDFASV-----PFVAAE 554 (681)
Q Consensus 485 li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 554 (681)
.+..+...|++++|..++++..+... .|+.. .+..+...+...++++.|...+++..+...... ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776421 12211 222345555566677777777777776322211 123455
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC------CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCCC-HHHHH
Q 047571 555 NIKMYGMCGFLECAKLVFDAVPV------KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNG----GFTPN-HFTFK 619 (681)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~~~~------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~ 619 (681)
+...|...|++++|...++++.. .+ ..+|..+...|...|++++|+..+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 55555555555555555544431 01 224455555555555555555555554421 11111 34455
Q ss_pred HHHHHHhccC-CHHHHHHHHHHh
Q 047571 620 VLLSICNQAG-FADEACRIFNVM 641 (681)
Q Consensus 620 ~l~~~~~~~g-~~~~A~~~~~~~ 641 (681)
.+..++.+.| ++++|.+.+++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHH
Confidence 5555555555 245555555544
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.47 E-value=3e-05 Score=72.99 Aligned_cols=216 Identities=11% Similarity=0.013 Sum_probs=112.6
Q ss_pred CChHHHHHHHHHHHHcCcCCCHHH-HHHHHHHhhccC--ChhHHHHHHHHHHHhCCCCChhHHHHHHHHH----Hhc---
Q 047571 392 GRLEQALRSIAWMQQEGFRPDVVT-VATVIPVCSQLK--ALNHGKEIHAYAVKNQFLPNVSIITSLMIMY----SKC--- 461 (681)
Q Consensus 392 ~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 461 (681)
...++|+..++.+... .|+..| ++.--..+...+ +++++++.++.+...+ +-+..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3345777777777764 344433 344444445555 7777777777777654 22333444333333 333
Q ss_pred CChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChh--HHHHHHHHhHhCCCCCCHHHHHHHHHHhccccc------h
Q 047571 462 GVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLD--DALGVFRSMQLSKHRPDSVAMARMLSVSGQLKA------L 530 (681)
Q Consensus 462 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------~ 530 (681)
++++++.++++.+.+ .+...|+.-...+.+.|.++ ++++.++++.+.. .-|...++.-.......+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 556666666666554 23445555455555555555 6666666666543 2333444433333333332 3
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHH-HHHHHHHHHhC
Q 047571 531 KLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQE-ALSLFDKMRNG 609 (681)
Q Consensus 531 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~ 609 (681)
+++.+.++.++.... .|...|+-+...+.+.|+... +..+.+++.+.
T Consensus 203 ~eEl~~~~~aI~~~p--------------------------------~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 203 DEELNYVKDKIVKCP--------------------------------QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHHHHHHHHHHHHCS--------------------------------SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHHHHHHHHHHHhCC--------------------------------CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 444444444443321 234455555555555554322 33444444432
Q ss_pred C--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 610 G--FTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 610 g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+ -+.+...+..++.++.+.|+.++|+++++.+.+
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 1 123566677777777777777777777777654
No 119
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.47 E-value=3.5e-07 Score=76.90 Aligned_cols=119 Identities=11% Similarity=-0.022 Sum_probs=97.1
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 047571 555 NIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFA 631 (681)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 631 (681)
|..++...|++++|...+..... |+ ...+-.+...|...|++++|++.|++..+.. +-+..+|..+..++.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 45667778999999999988777 22 5567788999999999999999999999853 34789999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHH-HHHhc
Q 047571 632 DEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHR-FREMS 677 (681)
Q Consensus 632 ~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 677 (681)
++|+..|+...+. .|+ ...+..+..+|.+.|+.++|.+ ++++.
T Consensus 82 ~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a 126 (150)
T 4ga2_A 82 DKAVECYRRSVEL---NPTQKDLVLKIAELLCKNDVTDGRAKYWVERA 126 (150)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999999988764 453 7889999999999999887665 45653
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=7.4e-06 Score=75.17 Aligned_cols=126 Identities=10% Similarity=-0.047 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHh
Q 047571 551 VAAENIKMYGMCGFLECAKLVFDAVPV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICN 626 (681)
Q Consensus 551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~ 626 (681)
+.-.+...+...|++++|.++|+.+.. |+....-.+...+.+.+++++|+..|++..... .|. ...+..+..++.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 344456667777777777777777665 433344445556667777777777776554421 111 235666677777
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 627 QAGFADEACRIFNVMSRGYKIEAL--EEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 627 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
..|++++|++.|++.... ...|. .........++.+.|+.++|+.+|+++.
T Consensus 183 ~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777776642 22142 3455666677777777777777777653
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.45 E-value=4.2e-06 Score=79.63 Aligned_cols=159 Identities=6% Similarity=-0.022 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH-----HHHHHHHHHhccccchHHHHHHHHHHHHcCCC---CC--hhHH
Q 047571 483 TAMIDSCIENGRLDDALGVFRSMQLSKHRPDS-----VAMARMLSVSGQLKALKLGKEIHGQVLKKDFA---SV--PFVA 552 (681)
Q Consensus 483 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~ 552 (681)
...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+.+..+.... +. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33455566677777777777666554221111 11222333444555666666666655542111 11 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhCCC-----CC-----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-CHHH
Q 047571 553 AENIKMYGMCGFLECAKLVFDAVPV-----KG-----SITWTAIIEAYGYNDLCQEALSLFDKMRNG----GFTP-NHFT 617 (681)
Q Consensus 553 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~ 617 (681)
..+...|...|++++|...++++.. ++ ..+|+.+...|...|++++|+..+++..+. +... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5555555556666655555554431 11 135666666666666666666666665432 1111 1455
Q ss_pred HHHHHHHHhccCCHHHH-HHHHHHh
Q 047571 618 FKVLLSICNQAGFADEA-CRIFNVM 641 (681)
Q Consensus 618 ~~~l~~~~~~~g~~~~A-~~~~~~~ 641 (681)
|..+..+|.+.|++++| ...+++.
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 66666666666766666 5555544
No 122
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=1.6e-06 Score=77.40 Aligned_cols=52 Identities=10% Similarity=-0.066 Sum_probs=28.8
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 047571 490 IENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLK 542 (681)
Q Consensus 490 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 542 (681)
...|++++|.+.++.+... .......+..+...+...|+++.|...+++..+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4567788888755444331 122344566666666677777777777766554
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.37 E-value=2e-06 Score=71.86 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=88.7
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC
Q 047571 61 FPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLEN 140 (681)
Q Consensus 61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 140 (681)
+...+...|.++.++..+...+.+.|++++|+..|++..... |-+...|..+..++...|++++|...|++..+.. +.
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~ 102 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KN 102 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CC
Confidence 556677777888888888899999999999999999988775 4577888888889999999999999999998887 55
Q ss_pred chhHHHHHHHHhhcCCChhHHHHhhhhc
Q 047571 141 NGFLRTKLVKMYTSCGSFEDAEKVFDES 168 (681)
Q Consensus 141 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 168 (681)
++..|..+..+|...|++++|++.|++.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6778888888888888888888888753
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.37 E-value=4.5e-06 Score=67.52 Aligned_cols=106 Identities=11% Similarity=-0.101 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571 550 FVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN 626 (681)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 626 (681)
..+......|.+.|++++|...|++... | +...|..+..+|...|++++|+..+++.++.+ +.+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3445556667777777777777776554 3 36677777788888888888888888887743 346777888888888
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHH
Q 047571 627 QAGFADEACRIFNVMSRGYKIEAL-EEHYLIMID 659 (681)
Q Consensus 627 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~ 659 (681)
..|++++|++.|+...+. .|+ ...+..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l---~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV---DPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH---CcCCHHHHHHHHH
Confidence 888888888888877653 443 444444443
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=4.4e-06 Score=68.33 Aligned_cols=115 Identities=7% Similarity=-0.138 Sum_probs=88.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047571 548 VPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI 624 (681)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 624 (681)
+...+..+...+...|++++|...+++... | +...|..+...+...|++++|++.+++..+.. +.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 355666677777777777777777776655 2 46678888888889999999999999988853 4477888889999
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC
Q 047571 625 CNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGR 666 (681)
Q Consensus 625 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 666 (681)
+.+.|++++|.+.+++..+. .| +...+..+..++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhcC
Confidence 99999999999999988764 23 35667777777776664
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.35 E-value=5.6e-06 Score=66.70 Aligned_cols=114 Identities=15% Similarity=0.021 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC 625 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 625 (681)
...+..+...+...|++++|...++++.. .+...+..+...+...|++++|+..++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34455566666666777777766666544 235577788888888999999999999888753 45778888888899
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcC
Q 047571 626 NQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFG 665 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 665 (681)
...|++++|.++++++.+.. +.+...+..+..++.+.|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcc
Confidence 99999999999998887641 223556666666665443
No 127
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.35 E-value=0.00044 Score=65.06 Aligned_cols=235 Identities=9% Similarity=0.083 Sum_probs=157.7
Q ss_pred HHHHHhcCC-HHHHHHHHhhcCCC---ChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHcCcCCCHHHHHHHHHHh----
Q 047571 354 VDMYCKCRD-MNSAWRVFYETEER---NEILWTALMSGYVSNG--RLEQALRSIAWMQQEGFRPDVVTVATVIPVC---- 423 (681)
Q Consensus 354 ~~~~~~~~~-~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---- 423 (681)
+.+..+.|. .++|+.++..+..- +..+|+.--..+...| +++++++.++.+.....+ +...++.--..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHH
Confidence 333344455 46899999887653 4567888888888888 999999999999886422 333343322222
Q ss_pred hcc---CChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH--HHHHHHhhCCC---CCcchHHHHHHHHHhcCC-
Q 047571 424 SQL---KALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLD--YSLKLFDEMEV---RNVISWTAMIDSCIENGR- 494 (681)
Q Consensus 424 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~---~~~~~~~~li~~~~~~~~- 494 (681)
... ++++++..+++.+.+.. +-+..+|+--...+.+.|.++ ++.++++++.+ .|...|+.-...+.+.++
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGG
T ss_pred HhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc
Confidence 333 78999999999999876 557778877777778888888 99999998876 455677776666777776
Q ss_pred -----hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccch-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047571 495 -----LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKAL-KLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECA 568 (681)
Q Consensus 495 -----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 568 (681)
++++++.++++.... +-|...++..-..+.+.|.. +....+...+.+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~------------------------ 251 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE------------------------ 251 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG------------------------
T ss_pred chhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc------------------------
Confidence 889999999998864 44566666666555555542 22334444433221
Q ss_pred HHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 047571 569 KLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVL 621 (681)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 621 (681)
.....++..+..+...|.+.|+.++|+++++.+.+. +.| ....|...
T Consensus 252 -----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW~~~ 299 (306)
T 3dra_A 252 -----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRSNFWDYQ 299 (306)
T ss_dssp -----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHH
T ss_pred -----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHHHHHHHH
Confidence 000123446666777777778888888888888763 234 44445443
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.35 E-value=1.2e-05 Score=72.24 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=89.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047571 481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYG 560 (681)
Q Consensus 481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 560 (681)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...++...+.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45556677888899999999988773 5677788888888888888888888888887764 234566667777777
Q ss_pred hcCCHHHHHHHhhhCCC--CC-h----------------hhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571 561 MCGFLECAKLVFDAVPV--KG-S----------------ITWTAIIEAYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 561 ~~g~~~~a~~~~~~~~~--~~-~----------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 609 (681)
..|++++|...++++.. |+ . ..|..+..+|...|++++|.+.|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777777766544 11 1 45666666677777777777777777663
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.35 E-value=5.6e-06 Score=66.92 Aligned_cols=95 Identities=11% Similarity=-0.004 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHH
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMI 658 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~ 658 (681)
...+......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.++...+. .| +...|..++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg 88 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhHHHHHHH
Confidence 3467788999999999999999999999853 458899999999999999999999999988764 34 478899999
Q ss_pred HHHhhcCCHHHHHHHHHhcc
Q 047571 659 DILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 659 ~~~~~~g~~~~A~~~~~~~~ 678 (681)
.+|...|++++|++.+++..
T Consensus 89 ~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999998754
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.33 E-value=2.5e-05 Score=74.22 Aligned_cols=155 Identities=11% Similarity=-0.032 Sum_probs=108.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCC---c------chHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CC----HHHHHH
Q 047571 454 LMIMYSKCGVLDYSLKLFDEMEVRN---V------ISWTAMIDSCIENGRLDDALGVFRSMQLSKHR-PD----SVAMAR 519 (681)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~---~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 519 (681)
.+..+...|++++|..++++..+.. . ..+..+...+...|++++|+..+++....... ++ ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888887765411 1 12334555566677888888888888764322 22 225777
Q ss_pred HHHHhccccchHHHHHHHHHHHHc-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHH
Q 047571 520 MLSVSGQLKALKLGKEIHGQVLKK-----DFAS-VPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWT 584 (681)
Q Consensus 520 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~ 584 (681)
+..+|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|...+++... .+ ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 778888888888888888877741 1111 244677888889999999999988887665 11 45788
Q ss_pred HHHHHHHcCCC-hHHHHHHHHHHHh
Q 047571 585 AIIEAYGYNDL-CQEALSLFDKMRN 608 (681)
Q Consensus 585 ~l~~~~~~~~~-~~~a~~~~~~m~~ 608 (681)
.+..+|...|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999994 6999999888764
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.33 E-value=1.7e-06 Score=72.46 Aligned_cols=95 Identities=14% Similarity=-0.137 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC 625 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 625 (681)
...+..+...+...|++++|...|+++.. | +...|..+..+|...|++++|+..|++..+.. +.+...+..+..++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 55666777888888999999888887665 3 46678888888888899999999998888753 34677888888888
Q ss_pred hccCCHHHHHHHHHHhhhc
Q 047571 626 NQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~~ 644 (681)
...|++++|++.|+...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8889999999888887664
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.31 E-value=2e-05 Score=74.86 Aligned_cols=161 Identities=12% Similarity=-0.079 Sum_probs=121.0
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hh
Q 047571 516 AMARMLSVSGQLKALKLGKEIHGQVLKKDFASV-----PFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SI 581 (681)
Q Consensus 516 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~ 581 (681)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|...+++... .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456677889999999999998887543221 12344566777888999999999876643 22 34
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHH---hC-CCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc---CCCCCC-h
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMR---NG-GFTP--NHFTFKVLLSICNQAGFADEACRIFNVMSRG---YKIEAL-E 651 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~---~~-g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~ 651 (681)
+|+.+...|...|++++|+..+++.. +. +-.+ ...++..+...|...|++++|++++++..+. .+.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78999999999999999999999987 32 1111 1268889999999999999999999987542 122222 6
Q ss_pred hHHHHHHHHHhhcCCHHHH-HHHHHh
Q 047571 652 EHYLIMIDILTRFGRIEEA-HRFREM 676 (681)
Q Consensus 652 ~~~~~l~~~~~~~g~~~~A-~~~~~~ 676 (681)
..|..++.+|.+.|+.++| ...+++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 7889999999999999999 776665
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.29 E-value=5.3e-06 Score=80.50 Aligned_cols=92 Identities=8% Similarity=-0.142 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHH
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMID 659 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~ 659 (681)
.+|..+..+|...|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|++..+. .| +...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 466677777777777777777777777642 336677777777777777777777777766653 33 3566777777
Q ss_pred HHhhcCCHHHH-HHHHHh
Q 047571 660 ILTRFGRIEEA-HRFREM 676 (681)
Q Consensus 660 ~~~~~g~~~~A-~~~~~~ 676 (681)
++.+.|+.++| ...+++
T Consensus 273 ~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 77777777776 334443
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.28 E-value=6.3e-06 Score=67.05 Aligned_cols=116 Identities=7% Similarity=-0.125 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC 625 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 625 (681)
...+..+...+...|++++|...++++.. .+...|..+...+...|++++|++.+++..+.. +.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34455566666777777777777766544 245677888888889999999999999988853 44678888899999
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCH
Q 047571 626 NQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRI 667 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 667 (681)
...|++++|.+.++...+. . +.+...+..+..++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL-D-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhc-C-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999988764 1 22467788888888877764
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.25 E-value=7.9e-06 Score=70.92 Aligned_cols=117 Identities=9% Similarity=-0.035 Sum_probs=83.8
Q ss_pred cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHH-HHcCCCh--HHH
Q 047571 526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEA-YGYNDLC--QEA 599 (681)
Q Consensus 526 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~-~~~~~~~--~~a 599 (681)
..|+++.|...++...+.. +.++..+..+...|...|++++|...++++.. | +...|..+... +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4455666666666655543 23456667777777777777777777776655 3 45567777777 7788888 999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 600 LSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 600 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
+..++++.+.. +.+...+..+...+...|++++|.+.++.+.+.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999988853 346788888889999999999999999988764
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.25 E-value=1.3e-05 Score=73.55 Aligned_cols=192 Identities=8% Similarity=-0.051 Sum_probs=117.7
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhHHHHH-------HHHHHhcCChHHHHHHHhhCCC--C-------C-c--------
Q 047571 425 QLKALNHGKEIHAYAVKNQFLPNVSIITSL-------MIMYSKCGVLDYSLKLFDEMEV--R-------N-V-------- 479 (681)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~--~-------~-~-------- 479 (681)
..++...|.+.|..+.+.. +-....|..+ ...+.+.++..+++..+..-.. | + .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777764 3344455544 3444444444444444443332 1 1 0
Q ss_pred ------chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHH
Q 047571 480 ------ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAA 553 (681)
Q Consensus 480 ------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 553 (681)
..+-.+...+...|++++|.++|+.+...+ |+.. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-----------------------------------~~~ 139 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-----------------------------------VAW 139 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-----------------------------------HHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-----------------------------------HHH
Confidence 012223445556666666666666555422 2221 333
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCC-CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHh
Q 047571 554 ENIKMYGMCGFLECAKLVFDAVPV-KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICN 626 (681)
Q Consensus 554 ~l~~~~~~~g~~~~a~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~ 626 (681)
.+...+.+.+++++|+..|+.... ++ ...+..+..++...|++++|+..|++.......|. .........++.
T Consensus 140 ~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~ 219 (282)
T 4f3v_A 140 MKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR 219 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 344567777888888888876554 32 23567778888999999999999999886443253 346677788889
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCChhHHHHH
Q 047571 627 QAGFADEACRIFNVMSRGYKIEALEEHYLIM 657 (681)
Q Consensus 627 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 657 (681)
+.|+.++|..+|+++... .|+...+..|
T Consensus 220 ~lGr~deA~~~l~~a~a~---~P~~~~~~aL 247 (282)
T 4f3v_A 220 SQGNESAAVALLEWLQTT---HPEPKVAAAL 247 (282)
T ss_dssp HHTCHHHHHHHHHHHHHH---SCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc---CCcHHHHHHH
Confidence 999999999999988775 3444444444
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.25 E-value=6.5e-06 Score=73.29 Aligned_cols=157 Identities=10% Similarity=-0.047 Sum_probs=74.7
Q ss_pred hcCChHHHHH---HHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCC-CHHHHHHHHHHhccccchH
Q 047571 460 KCGVLDYSLK---LFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLS----KHRP-DSVAMARMLSVSGQLKALK 531 (681)
Q Consensus 460 ~~g~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~ 531 (681)
..|++++|.+ .+..-.......+..+...+...|++++|+..+++.... +..+ ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333322223345555666666666666666666665441 1111 1123334444444555555
Q ss_pred HHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571 532 LGKEIHGQVLKK--DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNG 609 (681)
Q Consensus 532 ~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 609 (681)
+|...+++..+. ....++.. ....+..+...+...|++++|...+++..+.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~---------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLA---------------------------ASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHH---------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHH---------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 555554443321 00000000 0123455555666666666666666665431
Q ss_pred ----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 610 ----GFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 610 ----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+.+. -..++..+...+...|++++|.+.+++..+
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1111 123456666677777777777777766654
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.24 E-value=2.6e-06 Score=80.36 Aligned_cols=94 Identities=10% Similarity=-0.056 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHH
Q 047571 413 VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSC 489 (681)
Q Consensus 413 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~ 489 (681)
...+..+...+...|++++|...++...+.. +.+...+..+..+|.+.|++++|...+++..+ | +...+..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555566666777777777777666653 33555666666666666677766666666554 2 334555666666
Q ss_pred HhcCChhHHHHHHHHhHh
Q 047571 490 IENGRLDDALGVFRSMQL 507 (681)
Q Consensus 490 ~~~~~~~~A~~~~~~m~~ 507 (681)
...|++++|+..|++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666554
No 139
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.23 E-value=1e-05 Score=67.10 Aligned_cols=95 Identities=13% Similarity=-0.141 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC 625 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 625 (681)
...+..+...+.+.|++++|...|+++.. | +...|..+..+|...|++++|+..|++..+.+ +.+...+..+..++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 34445566677777777777777776655 3 35667777777777777777777777777743 33566677777777
Q ss_pred hccCCHHHHHHHHHHhhhc
Q 047571 626 NQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~~ 644 (681)
...|++++|++.|+...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776653
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.22 E-value=1.8e-05 Score=67.66 Aligned_cols=94 Identities=6% Similarity=-0.208 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHH--HH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVL--LS 623 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--~~ 623 (681)
..++..+..++...|++++|...+++... | +...|..+...+...|++++|...+++..+.. +.+...+..+ +.
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~ 125 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECN 125 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444455555555555555555554443 2 35577788888889999999999999988853 3355555443 44
Q ss_pred HHhccCCHHHHHHHHHHhhh
Q 047571 624 ICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~~~ 643 (681)
.+...|++++|++.++....
T Consensus 126 ~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 126 KIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccchHH
Confidence 47788999999999886643
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.22 E-value=1.1e-05 Score=67.52 Aligned_cols=90 Identities=12% Similarity=-0.003 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH
Q 047571 583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDIL 661 (681)
Q Consensus 583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 661 (681)
+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|++.|+...+. .| +...+..+..+|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHHHHHHH
Confidence 3444444445555555555555544431 224444444555555555555555555544432 12 234444455555
Q ss_pred hhcCCHHHHHHHHHh
Q 047571 662 TRFGRIEEAHRFREM 676 (681)
Q Consensus 662 ~~~g~~~~A~~~~~~ 676 (681)
...|++++|++.+++
T Consensus 100 ~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 100 LQXGELAEAESGLFL 114 (148)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 555555555554443
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=1.3e-05 Score=75.60 Aligned_cols=95 Identities=5% Similarity=-0.112 Sum_probs=59.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 047571 447 NVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV 523 (681)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 523 (681)
+...+..+...+.+.|++++|...|++..+ | +...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344556666667777777777777766543 3 44566666667777777777777777766542 2334455555666
Q ss_pred hccccchHHHHHHHHHHHH
Q 047571 524 SGQLKALKLGKEIHGQVLK 542 (681)
Q Consensus 524 ~~~~~~~~~a~~~~~~~~~ 542 (681)
+...|++++|...++...+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665554
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.19 E-value=1.3e-05 Score=64.98 Aligned_cols=95 Identities=9% Similarity=-0.069 Sum_probs=65.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC-CCCCC----hhHHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGY-KIEAL----EEHYLI 656 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~----~~~~~~ 656 (681)
++..+...+.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.++...+.. ...++ ...|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 56667777777888888888888877742 3366777777778888888888888777765421 11111 245667
Q ss_pred HHHHHhhcCCHHHHHHHHHhc
Q 047571 657 MIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 657 l~~~~~~~g~~~~A~~~~~~~ 677 (681)
++.++...|++++|++.+++.
T Consensus 89 lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 777777788888888777653
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.19 E-value=1.6e-05 Score=62.39 Aligned_cols=98 Identities=13% Similarity=-0.005 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMID 659 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 659 (681)
...|..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.+++..+......+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455566666777777777777777776642 335666777777777777777777777766653111113566777777
Q ss_pred HHhhc-CCHHHHHHHHHhcc
Q 047571 660 ILTRF-GRIEEAHRFREMSS 678 (681)
Q Consensus 660 ~~~~~-g~~~~A~~~~~~~~ 678 (681)
++.+. |++++|.+.+++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHhCCHHHHHHHHHHHh
Confidence 77777 77777777776654
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.19 E-value=1.9e-05 Score=63.52 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMID 659 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 659 (681)
...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 4578888899999999999999999998863 457888999999999999999999999998874 2335678899999
Q ss_pred HHhhcCCHHHHHHHHHhcc
Q 047571 660 ILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 660 ~~~~~g~~~~A~~~~~~~~ 678 (681)
++.+.|++++|.++++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 9999999999999998753
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.18 E-value=1.2e-05 Score=66.68 Aligned_cols=106 Identities=12% Similarity=-0.005 Sum_probs=89.8
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC
Q 047571 61 FPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLEN 140 (681)
Q Consensus 61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 140 (681)
+...+...|.+...+..+...+.+.|++++|+..|+.....+ +.+...+..+..++...|++++|...|+...... +.
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 84 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-IN 84 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CC
Confidence 455666777777888888999999999999999999998775 4578888889999999999999999999999887 56
Q ss_pred chhHHHHHHHHhhcCCChhHHHHhhhhc
Q 047571 141 NGFLRTKLVKMYTSCGSFEDAEKVFDES 168 (681)
Q Consensus 141 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 168 (681)
++..+..+..+|...|++++|.+.|+..
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7778888899999999999999988753
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.17 E-value=3.1e-05 Score=63.10 Aligned_cols=103 Identities=5% Similarity=-0.050 Sum_probs=88.6
Q ss_pred CCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhH
Q 047571 65 LPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFL 144 (681)
Q Consensus 65 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 144 (681)
.+..+.++.++..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 86 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKG 86 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHH
Confidence 34456667789999999999999999999999998764 4478889999999999999999999999999876 557788
Q ss_pred HHHHHHHhhcCCChhHHHHhhhhcC
Q 047571 145 RTKLVKMYTSCGSFEDAEKVFDESS 169 (681)
Q Consensus 145 ~~~l~~~~~~~g~~~~a~~~~~~~~ 169 (681)
+..+..++...|++++|.+.|++..
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8889999999999999999888643
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=1.4e-05 Score=68.18 Aligned_cols=95 Identities=7% Similarity=-0.164 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC 625 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 625 (681)
...+..+...+...|++++|...|++... | +...|..+..+|...|++++|+..+++..+.. +.+...|..+..++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455555666666666666666665554 2 35567777777777788888888887777743 33567777777777
Q ss_pred hccCCHHHHHHHHHHhhhc
Q 047571 626 NQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~~ 644 (681)
...|++++|++.|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 8888888888887777654
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.17 E-value=2.2e-05 Score=63.51 Aligned_cols=94 Identities=10% Similarity=-0.126 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC 625 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 625 (681)
...+..+...+.+.|++++|...|++... | +...|..+..++...|++++|+..+++..+.. +.+...|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34556666677777777777777776655 3 35667777777777777777777777777642 33566677777777
Q ss_pred hccCCHHHHHHHHHHhhh
Q 047571 626 NQAGFADEACRIFNVMSR 643 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~ 643 (681)
...|++++|++.|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777777777776654
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.15 E-value=2.5e-06 Score=74.12 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=92.9
Q ss_pred HhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCH--HH
Q 047571 560 GMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI-CNQAGFA--DE 633 (681)
Q Consensus 560 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~--~~ 633 (681)
...|++++|...+++... .+...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456778888888876654 356789999999999999999999999999853 4477888888888 7899998 99
Q ss_pred HHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 634 ACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 634 A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
|.+.++.+.+. .| +...+..+..+|.+.|++++|.+.+++..
T Consensus 100 A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 100 TRAMIDKALAL---DSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999998874 33 46788899999999999999999998764
No 151
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.13 E-value=0.00048 Score=65.54 Aligned_cols=244 Identities=9% Similarity=-0.012 Sum_probs=122.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHH-HHHHHHHHhhccC-ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 047571 382 TALMSGYVSNGRLEQALRSIAWMQQEGFRPDVV-TVATVIPVCSQLK-ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYS 459 (681)
Q Consensus 382 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (681)
+.+-....+.+..++|+++++++... .|+.. .++.--..+...| .+++++.+++.+.... +-+..+|+.-...+.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33333344455567888888888775 34433 3444444444555 4788888888877654 345556665555555
Q ss_pred hc-C-ChHHHHHHHhhCCCCC---cchHHHHHHHHHhcCChh--------HHHHHHHHhHhCCCCCCHHHHHHHHHHhcc
Q 047571 460 KC-G-VLDYSLKLFDEMEVRN---VISWTAMIDSCIENGRLD--------DALGVFRSMQLSKHRPDSVAMARMLSVSGQ 526 (681)
Q Consensus 460 ~~-g-~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 526 (681)
+. + ++++++++++.+.+.| ...|+.-...+.+.|.++ ++++.++++.+.. .-|...++.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 54 5 6777777777777633 344444444444444444 6666666666643 3344455555444444
Q ss_pred ccc-------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH--HHHHhhhCCCCChhhHHHHHHHHHcCCChH
Q 047571 527 LKA-------LKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLEC--AKLVFDAVPVKGSITWTAIIEAYGYNDLCQ 597 (681)
Q Consensus 527 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 597 (681)
.+. ++++.+.+++++... +-+...|+.+-..+.+.|+... -..++- ...+.+ +. ...
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~---~~~~~~-~~---------~~~ 279 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILP---YTASKL-NP---------DIE 279 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGG---GTC------------------
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccc---cccccc-cc---------cch
Confidence 443 344555555544432 2233344333333333332100 000000 000000 00 001
Q ss_pred HHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 598 EALSLFDKMRNGG-----FTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 598 ~a~~~~~~m~~~g-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+..+...++...+ -.++...+..|++.|...|+.++|.++++.+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 280 TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp ------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 1111111221111 134677777788888888888888888887765
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.09 E-value=3.3e-05 Score=61.26 Aligned_cols=94 Identities=12% Similarity=-0.070 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC 625 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 625 (681)
...+..+...+...|++++|...+++... | +...|..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45566677777888888888888877655 3 45667777777778888888888888877753 33667777777888
Q ss_pred hccCCHHHHHHHHHHhhh
Q 047571 626 NQAGFADEACRIFNVMSR 643 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~ 643 (681)
...|++++|.+.++...+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 888888888888877665
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.07 E-value=5.2e-05 Score=60.05 Aligned_cols=93 Identities=15% Similarity=-0.009 Sum_probs=54.8
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDIL 661 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 661 (681)
.|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 44555556666666666666666666532 335555666666666666666666666665543 111345566666666
Q ss_pred hhcCCHHHHHHHHHhc
Q 047571 662 TRFGRIEEAHRFREMS 677 (681)
Q Consensus 662 ~~~g~~~~A~~~~~~~ 677 (681)
.+.|++++|.+.+++.
T Consensus 83 ~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 6666666666666554
No 154
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=1.5e-05 Score=67.66 Aligned_cols=127 Identities=12% Similarity=-0.032 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-CHH
Q 047571 551 VAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNG----GFTP-NHF 616 (681)
Q Consensus 551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ 616 (681)
++..+...|...|++++|...+++... ++ ..++..+...+...|++++|++.+++..+. +-++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344445555555555555555554443 11 236777888888889999998888886653 1111 145
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcC---CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 617 TFKVLLSICNQAGFADEACRIFNVMSRGY---KIEAL-EEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
.+..+...+...|++++|.+.+++..+.. +..+. ...+..+..++...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 67778888899999999999988775421 22221 466888888999999999999988764
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.07 E-value=2.7e-05 Score=63.02 Aligned_cols=103 Identities=10% Similarity=-0.077 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCCC----HHHHHHH
Q 047571 551 VAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGG--FTPN----HFTFKVL 621 (681)
Q Consensus 551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~~~l 621 (681)
.+..+...+.+.|++++|...|++... | +...|+.+..+|...|++++|++.+++.++.+ ..++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 345566677777777777777776655 3 36678888888889999999999888887632 1111 2467778
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHH
Q 047571 622 LSICNQAGFADEACRIFNVMSRGYKIEALEEHYLI 656 (681)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 656 (681)
..++...|++++|++.|++..+. .|++.....
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~ 121 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE---FRDPELVKK 121 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHHH
Confidence 88888999999999999877653 455554443
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.07 E-value=3.9e-05 Score=60.14 Aligned_cols=99 Identities=13% Similarity=0.005 Sum_probs=85.9
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC--chhHHH
Q 047571 69 EKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLEN--NGFLRT 146 (681)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 146 (681)
|.++..+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 4566778889999999999999999999998764 4477888899999999999999999999999876 44 678888
Q ss_pred HHHHHhhcC-CChhHHHHhhhhcC
Q 047571 147 KLVKMYTSC-GSFEDAEKVFDESS 169 (681)
Q Consensus 147 ~l~~~~~~~-g~~~~a~~~~~~~~ 169 (681)
.+..++... |++++|.+.++...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999 99999999998765
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=5.2e-05 Score=76.79 Aligned_cols=119 Identities=4% Similarity=-0.146 Sum_probs=63.0
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C---Cc---------------chHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCC
Q 047571 455 MIMYSKCGVLDYSLKLFDEMEV--R---NV---------------ISWTAMIDSCIENGRLDDALGVFRSMQLSKH-RPD 513 (681)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~--~---~~---------------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~ 513 (681)
...+.+.|++++|++.|.++.+ + +. ..+..+...|...|++++|.+.+.++...-- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677888888888877653 1 10 1256677778888888888888877654211 112
Q ss_pred HH----HHHHHHHHhccccchHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHhh
Q 047571 514 SV----AMARMLSVSGQLKALKLGKEIHGQVLKK----DFAS-VPFVAAENIKMYGMCGFLECAKLVFD 573 (681)
Q Consensus 514 ~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 573 (681)
.. ....+-..+...|+.+.+..++...... +..+ -..++..+...|...|++++|..+++
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 11 1122222334456666776666655431 1111 13334444444444444444444443
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.06 E-value=2.3e-05 Score=62.78 Aligned_cols=92 Identities=9% Similarity=-0.221 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH
Q 047571 583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDIL 661 (681)
Q Consensus 583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 661 (681)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|++.+++..+. .| +...+..+..+|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 4445555666677777777777666642 335666666666677777777777777666543 33 245666666677
Q ss_pred hhcCCHHHHHHHHHhcc
Q 047571 662 TRFGRIEEAHRFREMSS 678 (681)
Q Consensus 662 ~~~g~~~~A~~~~~~~~ 678 (681)
.+.|++++|++.+++..
T Consensus 96 ~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 96 TNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 77777777776666543
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.06 E-value=3.2e-05 Score=62.47 Aligned_cols=92 Identities=9% Similarity=-0.047 Sum_probs=66.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDI 660 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~ 660 (681)
.|..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|++.++...+. .| +...|..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 45666677777788888888887777743 346677777777777888888888877777653 23 35677777777
Q ss_pred HhhcCCHHHHHHHHHhc
Q 047571 661 LTRFGRIEEAHRFREMS 677 (681)
Q Consensus 661 ~~~~g~~~~A~~~~~~~ 677 (681)
+...|++++|.+.+++.
T Consensus 82 ~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 82 QIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHH
Confidence 88888888887777654
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.06 E-value=4.8e-05 Score=62.45 Aligned_cols=116 Identities=9% Similarity=-0.142 Sum_probs=86.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047571 547 SVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLS 623 (681)
Q Consensus 547 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 623 (681)
.++..+..+...+...|++++|...|++... | +...|..+...+...|++++|+..+++..+.+ +.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 4577788888888899999999988887665 3 36678888888888999999999999888853 446788888888
Q ss_pred HHhccCCHHHHHHHHHHhhhcC---CCCCChhHHHHHHHHHhh
Q 047571 624 ICNQAGFADEACRIFNVMSRGY---KIEALEEHYLIMIDILTR 663 (681)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 663 (681)
++...|++++|++.|+...+.. ....+......+..+..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999888776531 122234555555444433
No 161
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.06 E-value=3.9e-05 Score=74.32 Aligned_cols=143 Identities=8% Similarity=-0.122 Sum_probs=97.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047571 478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIK 557 (681)
Q Consensus 478 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 557 (681)
+...|..+...|.+.|++++|+..|++..+.. |+... . ..+.+..+-. .....+..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~----------~-~~~~~~~~~~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS----------F-SNEEAQKAQA--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC----------C-CSHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hcccc----------C-ChHHHHHHHH--------HHHHHHHHHHH
Confidence 34567777778888888888888888877643 22100 0 0000000000 01345666677
Q ss_pred HHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047571 558 MYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEA 634 (681)
Q Consensus 558 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 634 (681)
+|.+.|++++|...++++.. .+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.|+.++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776655 346678888899999999999999999998853 34778888899999999999988
Q ss_pred -HHHHHHhh
Q 047571 635 -CRIFNVMS 642 (681)
Q Consensus 635 -~~~~~~~~ 642 (681)
...+..|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 44666654
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.06 E-value=4e-05 Score=65.40 Aligned_cols=95 Identities=9% Similarity=-0.023 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHH
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMI 658 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~ 658 (681)
...|..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.+++..+. .| +...|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 4567888899999999999999999999853 448889999999999999999999999998874 34 478899999
Q ss_pred HHHhhcCCHHHHHHHHHhcc
Q 047571 659 DILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 659 ~~~~~~g~~~~A~~~~~~~~ 678 (681)
.+|.+.|++++|++.+++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 99999999999999998753
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.05 E-value=0.0046 Score=58.82 Aligned_cols=251 Identities=12% Similarity=0.039 Sum_probs=150.7
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCC-ChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhcc-C-C
Q 047571 355 DMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNG-RLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQL-K-A 428 (681)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~-~ 428 (681)
....+.+..++|+++++.+..- +..+|+.--..+...| .++++++.++.+..... -+...++.--..+... + +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCC
Confidence 3334445567899999888753 5567787777888888 59999999999998643 2555565555555554 5 7
Q ss_pred hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH--------HHHHHHhhCCC---CCcchHHHHHHHHHhcCC---
Q 047571 429 LNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLD--------YSLKLFDEMEV---RNVISWTAMIDSCIENGR--- 494 (681)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~---~~~~~~~~li~~~~~~~~--- 494 (681)
++++.++++.+.+.. +-+...|+--...+.+.|.++ ++++.++++.+ .|...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccccc
Confidence 899999999988754 446666665555555555555 88888887765 466778887777777776
Q ss_pred ----hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHH--HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047571 495 ----LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKL--GKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECA 568 (681)
Q Consensus 495 ----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 568 (681)
++++++.++++.... +-|...+..+-..+.+.|.... -..++= ..+...++. .. .-.+.+
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~---~~~~~~~~~-~~---------~~~~~~ 285 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILP---YTASKLNPD-IE---------TVEAFG 285 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGG---GTC------------------------
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccc---ccccccccc-ch---------hHHHHH
Confidence 688999998888753 3445555554444443332200 000000 000000000 00 000111
Q ss_pred HHHhhhC-----CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 047571 569 KLVFDAV-----PVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLL 622 (681)
Q Consensus 569 ~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~ 622 (681)
..++..- ..+....+.-++..|...|+.++|.++++.+.+. ..| ...-|...+
T Consensus 286 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~~ 344 (349)
T 3q7a_A 286 FPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFRR 344 (349)
T ss_dssp CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHH
T ss_pred HHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHHH
Confidence 1111111 0134556777888888888889999999988754 344 344444433
No 164
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.04 E-value=3.4e-05 Score=62.54 Aligned_cols=115 Identities=11% Similarity=-0.041 Sum_probs=70.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047571 480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMY 559 (681)
Q Consensus 480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 559 (681)
..+..+...+...|++++|...+++..... +.+... +..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-----------------------------------~~~~a~~~ 56 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVY-----------------------------------FCNRAAAY 56 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHH-----------------------------------HHHHHHHH
Confidence 345555556666666666666666665532 223334 44444444
Q ss_pred HhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 047571 560 GMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFA 631 (681)
Q Consensus 560 ~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 631 (681)
...|++++|...+++... | +...|..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++
T Consensus 57 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 57 SKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 455555555555444333 2 24567777888888899999999998888753 34677777777777776653
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=9.5e-05 Score=61.50 Aligned_cols=108 Identities=9% Similarity=-0.115 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLL 622 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 622 (681)
...+..+...+...|++++|...|++... |+ ...|..+...|...|++++|+..+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 106 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence 44555566666666777777776666554 43 4567777888888888888888888888752 33677788888
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHH
Q 047571 623 SICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDI 660 (681)
Q Consensus 623 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~ 660 (681)
.++...|++++|.+.|++..+. .|+ ...+..+..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL---EPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHH
Confidence 8888888999998888877764 333 3444444444
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.00 E-value=3.8e-05 Score=63.05 Aligned_cols=94 Identities=5% Similarity=-0.138 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMID 659 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 659 (681)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++...+. . +.+...+..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-D-GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-chhHHHHHHHHH
Confidence 3445555555555555555555555555532 224455555555555555555555555555442 1 112445555555
Q ss_pred HHhhcCCHHHHHHHHHh
Q 047571 660 ILTRFGRIEEAHRFREM 676 (681)
Q Consensus 660 ~~~~~g~~~~A~~~~~~ 676 (681)
+|...|++++|.+.+++
T Consensus 86 ~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 86 CQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 55555555555555544
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.96 E-value=2.4e-05 Score=63.47 Aligned_cols=108 Identities=9% Similarity=-0.094 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 047571 551 VAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGF--TPN----HFTFKVL 621 (681)
Q Consensus 551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~l 621 (681)
.+..+...+...|++++|...+++... .+...+..+...+...|++++|+..+++..+... .++ ..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 344455556666666666666665444 2355667777777778888888888887776421 112 6677778
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHH
Q 047571 622 LSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDIL 661 (681)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 661 (681)
..++...|++++|.+.++...+. .|+......+..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 88888888888888888877764 33445555444443
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.95 E-value=4.5e-05 Score=67.51 Aligned_cols=87 Identities=11% Similarity=-0.043 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHH
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMID 659 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~ 659 (681)
..|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|++.|+...+. .| +...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHH
Confidence 567778888888999999999999888853 447788888888899999999999999887764 33 3667788888
Q ss_pred HHhhcCCHHHHH
Q 047571 660 ILTRFGRIEEAH 671 (681)
Q Consensus 660 ~~~~~g~~~~A~ 671 (681)
++...|+.+++.
T Consensus 165 ~~~~~~~~~~~~ 176 (198)
T 2fbn_A 165 CVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 888777777666
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=0.00012 Score=60.78 Aligned_cols=96 Identities=8% Similarity=-0.127 Sum_probs=82.8
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHH
Q 047571 579 GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN----HFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHY 654 (681)
Q Consensus 579 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 654 (681)
+...+..+...+...|++++|++.|++..+. .|+ ...+..+..++...|++++|++.++...+. .+.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 4567888899999999999999999999985 565 678888999999999999999999988764 12246788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 655 LIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 655 ~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
..+..+|...|++++|.+.+++..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999998753
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.92 E-value=7.1e-05 Score=60.63 Aligned_cols=97 Identities=10% Similarity=0.002 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-CCC----hhHHH
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKI-EAL----EEHYL 655 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~ 655 (681)
..|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|..+++...+.... .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 467788889999999999999999999863 557888999999999999999999999988764211 122 67889
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcc
Q 047571 656 IMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 656 ~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
.++.++.+.|++++|.+.+++..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999998753
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00027 Score=71.46 Aligned_cols=189 Identities=14% Similarity=-0.008 Sum_probs=131.2
Q ss_pred HHHhhccCChhHHHHHHHHHHHhCCCCCh----------------hHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC
Q 047571 420 IPVCSQLKALNHGKEIHAYAVKNQFLPNV----------------SIITSLMIMYSKCGVLDYSLKLFDEMEV-----RN 478 (681)
Q Consensus 420 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~ 478 (681)
...+.+.|++++|.+.|..+.+....... ..+..+...|.+.|++++|.+.+..+.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567889999999999999885432211 2367789999999999999999988764 11
Q ss_pred c----chHHHHHHHHHhcCChhHHHHHHHHhHh----CCCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHc--CCC-
Q 047571 479 V----ISWTAMIDSCIENGRLDDALGVFRSMQL----SKHRPD-SVAMARMLSVSGQLKALKLGKEIHGQVLKK--DFA- 546 (681)
Q Consensus 479 ~----~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~- 546 (681)
. ...+.+-..+...|++++|..++++... .+..+. ..++..+...+...|++++|..++..+... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1233333444567899999999988754 333443 446778889999999999999999987753 111
Q ss_pred -C-ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC-----hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 547 -S-VPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG-----SITWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 547 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
+ ...++..+++.|...|++++|..++++... ++ ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 145666777777777888877777765543 11 23455555666667777777777777655
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.89 E-value=2.7e-05 Score=79.36 Aligned_cols=115 Identities=12% Similarity=-0.059 Sum_probs=81.1
Q ss_pred HHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047571 558 MYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEA 634 (681)
Q Consensus 558 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 634 (681)
.+.+.|++++|...++++.. | +..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455666666666665544 3 35678888888889999999999999988853 34678888888999999999999
Q ss_pred HHHHHHhhhcCCCCCChhHHHHHHHH--HhhcCCHHHHHHHHH
Q 047571 635 CRIFNVMSRGYKIEALEEHYLIMIDI--LTRFGRIEEAHRFRE 675 (681)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 675 (681)
++.+++..+...- +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999988764222 23455555555 888899999998887
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.88 E-value=0.00014 Score=58.78 Aligned_cols=90 Identities=13% Similarity=-0.084 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCC--CCh----hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 047571 554 ENIKMYGMCGFLECAKLVFDAVPV--KGS----ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN---HFTFKVLLSI 624 (681)
Q Consensus 554 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~ 624 (681)
.+...+...|++++|...|+.+.. |+. ..+..+..++...|++++|+..|++..+.. +.+ ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 345556667777777777766554 332 367777888888999999999999888753 223 6678888888
Q ss_pred HhccCCHHHHHHHHHHhhhc
Q 047571 625 CNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 625 ~~~~g~~~~A~~~~~~~~~~ 644 (681)
+...|++++|.+.|+.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999988775
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.87 E-value=5.4e-05 Score=60.52 Aligned_cols=91 Identities=15% Similarity=0.010 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 047571 552 AAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA 628 (681)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 628 (681)
+..+...+.+.|++++|...++++.. | +...|..+..++...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 44566677888888888888887766 4 46788889999999999999999999999853 34778899999999999
Q ss_pred CCHHHHHHHHHHhhh
Q 047571 629 GFADEACRIFNVMSR 643 (681)
Q Consensus 629 g~~~~A~~~~~~~~~ 643 (681)
|++++|++.++...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998765
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.87 E-value=0.00015 Score=58.56 Aligned_cols=95 Identities=13% Similarity=-0.101 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHH
Q 047571 583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH---FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMI 658 (681)
Q Consensus 583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~ 658 (681)
+..+...+...|++++|+..|++..+.. +.+. ..+..+..++.+.|++++|++.++.+.+.....+. ...+..++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 4456677889999999999999998853 2233 57888999999999999999999998875222221 56788899
Q ss_pred HHHhhcCCHHHHHHHHHhcc
Q 047571 659 DILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 659 ~~~~~~g~~~~A~~~~~~~~ 678 (681)
.++.+.|++++|.+.++++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999998763
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.87 E-value=9.6e-05 Score=74.99 Aligned_cols=88 Identities=11% Similarity=-0.068 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHH
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMID 659 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~ 659 (681)
..|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+. .| +...+..+..
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV---NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---C----CHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 456666777777777777777777777642 335666777777777777777777777766542 33 2456666777
Q ss_pred HHhhcCCHHHHHH
Q 047571 660 ILTRFGRIEEAHR 672 (681)
Q Consensus 660 ~~~~~g~~~~A~~ 672 (681)
++.+.|+.++|.+
T Consensus 394 ~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 394 CQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666554
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.86 E-value=0.00016 Score=59.64 Aligned_cols=94 Identities=13% Similarity=-0.095 Sum_probs=68.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHhccCCHHHHHHHHHHhhhc----
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN-------------HFTFKVLLSICNQAGFADEACRIFNVMSRG---- 644 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 644 (681)
.+......+...|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3445566667778888888888877763 333 237888888888888888888888877652
Q ss_pred CCCCCC-hhHH----HHHHHHHhhcCCHHHHHHHHHhc
Q 047571 645 YKIEAL-EEHY----LIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 645 ~~~~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
..+.|+ ...| .....+|...|++++|++.+++.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 233665 5667 78888888889999998888764
No 178
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.84 E-value=3.3e-05 Score=68.37 Aligned_cols=120 Identities=11% Similarity=-0.075 Sum_probs=86.8
Q ss_pred HHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH----------------H
Q 047571 556 IKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH----------------F 616 (681)
Q Consensus 556 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----------------~ 616 (681)
+......|+++++.+.++.... .....+..+...+...|++++|+..|++..+.. +.+. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHH
Confidence 3344455666666666654333 124467778888999999999999999999852 2232 7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 617 TFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
.+..+..+|.+.|++++|++.++...+. .+.+...+..+..+|...|++++|.+.+++..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8888999999999999999999998874 22347889999999999999999999998753
No 179
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.84 E-value=2e-05 Score=61.95 Aligned_cols=96 Identities=9% Similarity=-0.048 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-------hh
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-------EE 652 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~ 652 (681)
...|..+...+...|++++|++.|++..+.. +.+...+..+..++.+.|++++|++.++...+. .|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHH
Confidence 3467778888999999999999999998853 447888999999999999999999999988763 343 55
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 653 HYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 653 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
.+..+..++...|+.++|.+.++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence 677788888888888888887777664
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.76 E-value=4.5e-05 Score=60.60 Aligned_cols=80 Identities=5% Similarity=-0.052 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDI 660 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 660 (681)
..|..+...|...|++++|+..+++..+.. +-+...+..+..++...|++++|++.+++..+.....|+...|...+..
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 467778888888899999999999888853 4467888888888999999999999988877653333333333333333
Q ss_pred H
Q 047571 661 L 661 (681)
Q Consensus 661 ~ 661 (681)
|
T Consensus 107 ~ 107 (117)
T 3k9i_A 107 Y 107 (117)
T ss_dssp H
T ss_pred H
Confidence 3
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.75 E-value=0.00015 Score=70.96 Aligned_cols=89 Identities=7% Similarity=-0.164 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHH
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMI 658 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~ 658 (681)
...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++++|++.|++..+. .| +...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 4578889999999999999999999999853 447888999999999999999999999988764 34 467788888
Q ss_pred HHHhhcCCHHHHHH
Q 047571 659 DILTRFGRIEEAHR 672 (681)
Q Consensus 659 ~~~~~~g~~~~A~~ 672 (681)
.++.+.|+.++|.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888898888765
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.73 E-value=3.7e-05 Score=61.09 Aligned_cols=83 Identities=14% Similarity=0.068 Sum_probs=67.0
Q ss_pred cCCChHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHH
Q 047571 592 YNDLCQEALSLFDKMRNGGF-TP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIE 668 (681)
Q Consensus 592 ~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 668 (681)
..|++++|+..|++..+.+. .| +...+..+..+|...|++++|++.+++..+. .| +...+..+..+|.+.|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHH
Confidence 46889999999999998541 13 5678899999999999999999999998874 33 3788999999999999999
Q ss_pred HHHHHHHhc
Q 047571 669 EAHRFREMS 677 (681)
Q Consensus 669 ~A~~~~~~~ 677 (681)
+|++.+++.
T Consensus 79 ~A~~~~~~a 87 (117)
T 3k9i_A 79 QGVELLLKI 87 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988864
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.71 E-value=0.00015 Score=61.28 Aligned_cols=132 Identities=14% Similarity=0.029 Sum_probs=82.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047571 481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHR-PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMY 559 (681)
Q Consensus 481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 559 (681)
++..+...+...|++++|+..+++..+.... ++... ....+..+...|
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~l~~~~ 59 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA-------------------------------ERIAYSNLGNAY 59 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH-------------------------------HHHHHHHHHHHH
Confidence 5666677777788888888888776653110 11100 012333344444
Q ss_pred HhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHH
Q 047571 560 GMCGFLECAKLVFDAVPV-----KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNG----GFTP-NHFTFKVLLSIC 625 (681)
Q Consensus 560 ~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~ 625 (681)
...|++++|...+++... .+ ...+..+...+...|++++|.+.+++..+. +.++ ...++..+...+
T Consensus 60 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 60 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 445555555544444332 11 335677788888899999999888887643 2112 245678888899
Q ss_pred hccCCHHHHHHHHHHhhh
Q 047571 626 NQAGFADEACRIFNVMSR 643 (681)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~ 643 (681)
...|++++|.+.+++..+
T Consensus 140 ~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 999999999999987755
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.67 E-value=0.00021 Score=60.63 Aligned_cols=95 Identities=11% Similarity=-0.098 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCCC---------------------ChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPVK---------------------GSITWTAIIEAYGYNDLCQEALSLFDKMR 607 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 607 (681)
...+......+.+.|++++|...|.+...- +...|..+..+|...|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677788888899999999888766541 13567788888888999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 608 NGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 608 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
+.. +.+...|..+..+|...|++++|++.|+...+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 853 447788888889999999999999999877653
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=9.9e-05 Score=71.50 Aligned_cols=146 Identities=9% Similarity=-0.076 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcC
Q 047571 514 SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYN 593 (681)
Q Consensus 514 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 593 (681)
...+..+...+.+.|+++.|...|+..++.. |+.. .+...|+.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH------HHHHHHHHHHHHHc
Confidence 4456677778888899999999988877643 2211 1223334444433332 23788899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHH-hhcCCHHHHH
Q 047571 594 DLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDIL-TRFGRIEEAH 671 (681)
Q Consensus 594 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~~g~~~~A~ 671 (681)
|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|++..+ +.|+ ...+..|..+. ...+..+++.
T Consensus 244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998853 44788999999999999999999999997765 3443 45566666553 4456777888
Q ss_pred HHHHhcc
Q 047571 672 RFREMSS 678 (681)
Q Consensus 672 ~~~~~~~ 678 (681)
+++.+|.
T Consensus 320 ~~~~~~l 326 (338)
T 2if4_A 320 EMYKGIF 326 (338)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 8887764
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.64 E-value=0.00016 Score=73.67 Aligned_cols=90 Identities=7% Similarity=-0.202 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI- 624 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~- 624 (681)
...+..+..+|.+.|++++|...++++.. | +...|..+..+|...|++++|++.|++..+.. +.+...+..+..+
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~ 118 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECN 118 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444444444444444444444444333 2 23455555666666666666666666665532 1133333334333
Q ss_pred -HhccCCHHHHHHHHH
Q 047571 625 -CNQAGFADEACRIFN 639 (681)
Q Consensus 625 -~~~~g~~~~A~~~~~ 639 (681)
+.+.|++++|++.++
T Consensus 119 ~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 119 KIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhcccc
Confidence 555566666666665
No 187
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.62 E-value=3.7e-05 Score=74.08 Aligned_cols=430 Identities=11% Similarity=0.048 Sum_probs=228.0
Q ss_pred hHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 047571 143 FLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAG 222 (681)
Q Consensus 143 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 222 (681)
.+|..|..+..+.+++.+|++-| ++..|+..|..++.+..+.| .+++-+..+...++..-.| ..=+.|+-+|++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~--~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSG--NWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSS--CCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred cHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 34444555555555444444433 22334444555555555555 5555555544433332222 222345555665
Q ss_pred cCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccC------------------------CCChhh
Q 047571 223 ASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETG------------------------DRDIVV 278 (681)
Q Consensus 223 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------------------------~~~~~~ 278 (681)
.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+. ..++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 555554443331 2343334445555555555555555555443 136778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHH
Q 047571 279 WGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYC 358 (681)
Q Consensus 279 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (681)
|-.+-.+|...+.+.-|.-+--.+.- .| .....++..|...|.+++...+++..... -......|+.|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHH
Confidence 99999999999988766544333321 12 22334556677888888888888876632 3345667777777777
Q ss_pred hcCCHHHHHHHHhhcCCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc--------------CcCCCH
Q 047571 359 KCRDMNSAWRVFYETEER-----------NEILWTALMSGYVSNGRLEQALRSIAWMQQE--------------GFRPDV 413 (681)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------------g~~p~~ 413 (681)
+- +.++..+.++..-.+ ....|.-++-.|++-.+++.|... |.++ .-..|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~ 350 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANV 350 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCS
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchH
Confidence 65 455555555443332 455788888888888888877533 2221 012233
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcch-HHHHHHHHHhc
Q 047571 414 VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVIS-WTAMIDSCIEN 492 (681)
Q Consensus 414 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~li~~~~~~ 492 (681)
..|...|.-|.... +..-.+++.-+. ..+.+ +..+..+.+.|++.-...++......|... -.++-..|...
T Consensus 351 EiyYKAi~FYL~e~-P~lL~DLL~vL~-prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEE 423 (624)
T 3lvg_A 351 ELYYRAIQFYLEFK-PLLLNDLLMVLS-PRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITE 423 (624)
T ss_dssp HHHHHHHHHHTTSC-CTTSHHHHHHHC-TTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-hHHHHHHHHhcc-ccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 34444444333321 111111111110 00011 123344444555544444444444444433 33445556666
Q ss_pred CChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHh
Q 047571 493 GRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVF 572 (681)
Q Consensus 493 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (681)
.+++ +...-++.|..-..+..|.++-. ..-...-..-...|.+.++|+++..+.
T Consensus 424 EDy~-------------------~LR~SId~ydNFD~i~LA~rLEk-------HeL~eFRrIAA~LYkkn~rw~qsi~l~ 477 (624)
T 3lvg_A 424 EDYQ-------------------ALRTSIDAYDNFDNISLAQRLEK-------HELIEFRRIAAYLFKGNNRWKQSVELC 477 (624)
T ss_dssp TCCH-------------------HHHHTTSSCCCSCTTHHHHHHHT-------CSSHHHHHHHHHHHHTTCHHHHHSSCS
T ss_pred hhHH-------------------HHHHHHHHhccccHHHHHHHHhh-------CchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 6554 22222333334444444443321 112233344566788888888888776
Q ss_pred hhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047571 573 DAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRI 637 (681)
Q Consensus 573 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 637 (681)
++=. .|.-.|......|+.+-|.++++-.++.| +..+|...+-.|...=+++-++++
T Consensus 478 KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 478 KKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp STTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred Hhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 5433 23334455566888888888888888755 556677777777777777777665
No 188
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.61 E-value=0.0076 Score=57.00 Aligned_cols=135 Identities=7% Similarity=-0.046 Sum_probs=77.3
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHhhCCC---CCcchHHHHHHHHH
Q 047571 425 QLKAL-NHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV----------LDYSLKLFDEMEV---RNVISWTAMIDSCI 490 (681)
Q Consensus 425 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~---~~~~~~~~li~~~~ 490 (681)
+.|.+ ++|..+...+...+ +-+..+++.--..+...+. ++++..+++.+.. .+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44544 46788888877654 2233344433233322222 4566666666654 34456666555666
Q ss_pred hcC--ChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccc-hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047571 491 ENG--RLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKA-LKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC 562 (681)
Q Consensus 491 ~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 562 (681)
+.| .+++++.+++++.+.. +-|...|+.-...+...|. ++++.+.++.+++.++ .+...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHh
Confidence 666 3677888887777754 4455666665555556666 4677777777776652 3455555554444443
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.59 E-value=0.00026 Score=58.41 Aligned_cols=62 Identities=18% Similarity=0.045 Sum_probs=53.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhC-----CCCC-CHHHH----HHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNG-----GFTP-NHFTF----KVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~~p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.|..+..++.+.|++++|+..+++.++. .+.| +...| .....++...|++++|++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7888999999999999999999998883 1166 45678 8999999999999999999998865
No 190
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.53 E-value=0.021 Score=54.04 Aligned_cols=204 Identities=10% Similarity=0.022 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--ChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCC-hhHHHHHH
Q 047571 429 LNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG--VLDYSLKLFDEMEV---RNVISWTAMIDSCIENGR-LDDALGVF 502 (681)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~A~~~~ 502 (681)
++++..+++.+.... +-+..+|+.-...+.+.| .++++..+++.+.+ .|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 466777777777654 445666666666666666 37788888887765 455666666666677777 58888888
Q ss_pred HHhHhCCCCCCHHHHHHHHHHhccc--------------cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047571 503 RSMQLSKHRPDSVAMARMLSVSGQL--------------KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECA 568 (681)
Q Consensus 503 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 568 (681)
+++.+.. +-|...|+.....+... +.++++.+.+...+... +-+...|+.+-..+.+.-.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~---- 242 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSG---- 242 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSC----
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccC----
Confidence 8888764 34555555444433332 34556666666655543 2234444333333322200
Q ss_pred HHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHH---HHhccCCHHHHHHHHHHhhhc
Q 047571 569 KLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLS---ICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~ 644 (681)
.++. + -...+.++++++.++++.+. .| +..++..++. +....|..++...+++++.+-
T Consensus 243 --------~~~~-~-------~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 243 --------RCEL-S-------VEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp --------GGGC-C-------HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred --------cccc-c-------hHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 0000 0 00113467778888888773 45 3343333322 223457777888888877653
Q ss_pred CCCCCC-hhHHHHHHHH
Q 047571 645 YKIEAL-EEHYLIMIDI 660 (681)
Q Consensus 645 ~~~~~~-~~~~~~l~~~ 660 (681)
.|. ..-|..+...
T Consensus 305 ---Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 305 ---DPMRAAYLDDLRSK 318 (331)
T ss_dssp ---CGGGHHHHHHHHHH
T ss_pred ---CcchhhHHHHHHHH
Confidence 443 3444444433
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.50 E-value=0.0003 Score=71.12 Aligned_cols=98 Identities=8% Similarity=-0.024 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh----cCCC-C
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNG-----G-FTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR----GYKI-E 648 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~ 648 (681)
.+++.|..+|...|++++|+.++++..+- | -.| ...+++.|...|...|++++|..++++..+ .+|. .
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46777777777778887777777765531 2 123 245677888888888888888888876643 2232 2
Q ss_pred CC-hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571 649 AL-EEHYLIMIDILTRFGRIEEAHRFREMSS 678 (681)
Q Consensus 649 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 678 (681)
|+ ..+...+..++...|++++|..++.++.
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 4556677777778888888888777653
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.46 E-value=0.00061 Score=69.07 Aligned_cols=142 Identities=13% Similarity=-0.058 Sum_probs=92.8
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571 479 VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM 558 (681)
Q Consensus 479 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (681)
...|..+...|.+.|++++|+..|++..+.. |+...+ . .+...+. . ......|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~~~-~-------~~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESKAS-E-------SFLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHHHH-H-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHHHH-H-------HHHHHHHHHHHHH
Confidence 3467777888888899999999888887632 221000 0 0000000 0 0013456667777
Q ss_pred HHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 047571 559 YGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEA 634 (681)
Q Consensus 559 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 634 (681)
|.+.|++++|...++++.. .+...|..+..+|...|++++|+..|++..+. .| +...+..+..++.+.|+.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776665 34667888888899999999999999999885 45 667788888888888888877
Q ss_pred HH-HHHHhhh
Q 047571 635 CR-IFNVMSR 643 (681)
Q Consensus 635 ~~-~~~~~~~ 643 (681)
.+ .+..|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 64 4555533
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00021 Score=55.83 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=78.7
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCc------hhH
Q 047571 71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENN------GFL 144 (681)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 144 (681)
+...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...++...+.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 34567888899999999999999999998764 4578889999999999999999999999998765 223 556
Q ss_pred HHHHHHHhhcCCChhHHHHhhhhcC
Q 047571 145 RTKLVKMYTSCGSFEDAEKVFDESS 169 (681)
Q Consensus 145 ~~~l~~~~~~~g~~~~a~~~~~~~~ 169 (681)
+..+..++...|+.+.|.+.+++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 6667777777788888877777654
No 194
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.43 E-value=0.00095 Score=56.47 Aligned_cols=98 Identities=14% Similarity=-0.093 Sum_probs=71.4
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHc--------C---------CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 047571 515 VAMARMLSVSGQLKALKLGKEIHGQVLKK--------D---------FASVPFVAAENIKMYGMCGFLECAKLVFDAVPV 577 (681)
Q Consensus 515 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 577 (681)
..+......+.+.|+++.|...|...++. . -+....++..+..+|.+.|++++|...++++..
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 35566667777888888888888877764 0 012245677778888888888888888887665
Q ss_pred --C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 047571 578 --K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN 614 (681)
Q Consensus 578 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 614 (681)
| +...|..+..+|...|++++|+..|++..+. .|+
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~ 129 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA 129 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC
Confidence 3 3667777888888888888888888888874 453
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.42 E-value=0.00022 Score=56.26 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=51.1
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 579 GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 579 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
+...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|+...+.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35567778888888888888888888888753 346777888888888888888888888877653
No 196
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.39 E-value=3.9e-06 Score=80.65 Aligned_cols=275 Identities=12% Similarity=0.087 Sum_probs=159.2
Q ss_pred ChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHH
Q 047571 157 SFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALL 236 (681)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 236 (681)
+++.|.+.-++...| ..|..+..+....+ .+.+|++.|-+ .-|...|.-++.++.+.|.+++-...+...
T Consensus 40 ~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~--~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 40 NLDRAYEFAERCNEP--AVWSQLAKAQLQKG--MVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CSTTTTTSSSSCCCC--CCSSSHHHHTTTSS--SCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred ccHHHHHHHHHhCCc--cHHHHHHHHHHccC--chHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344444444433333 23556666655555 55554443322 123344555555555555555544444433
Q ss_pred HHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 047571 237 IKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTI 316 (681)
Q Consensus 237 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 316 (681)
++.. ++...=+.|+-+|++.++..+..+++ -.||..-...
T Consensus 110 Rk~~---------------------------------ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~ 149 (624)
T 3lvg_A 110 RKKA---------------------------------RESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQ 149 (624)
T ss_dssp STTC---------------------------------CSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHH
T ss_pred HHHh---------------------------------cccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHH
Confidence 3322 23333344445555554444322222 1356666666
Q ss_pred HHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHH
Q 047571 317 LLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQ 396 (681)
Q Consensus 317 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 396 (681)
+.+-|...|.++.|.-+|..+... ..|..++.+.|++..|.+.-++ ..++.+|..+-.+|...+.+.-
T Consensus 150 VGDrcf~e~lYeAAKilys~isN~----------akLAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrL 217 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNNVSNF----------GRLASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRL 217 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGGSCCC----------TTTSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTT
T ss_pred HHHHHHHccCHHHHHHHHHhCccH----------HHHHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHH
Confidence 667777777777777777665544 3455556666776666543222 2367789999999999998876
Q ss_pred HHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 047571 397 ALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV 476 (681)
Q Consensus 397 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 476 (681)
|...--.+.- ...-...++..|...|.+++-..+++.-.... +....+|+-|.-.|+|- ++++..+.++..-.
T Consensus 218 AqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~s 290 (624)
T 3lvg_A 218 AQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWS 290 (624)
T ss_dssp TTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS
T ss_pred HHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 6543333321 22233456777889999999888888765322 56778888888888875 45666666554332
Q ss_pred ----C-------CcchHHHHHHHHHhcCChhHHHH
Q 047571 477 ----R-------NVISWTAMIDSCIENGRLDDALG 500 (681)
Q Consensus 477 ----~-------~~~~~~~li~~~~~~~~~~~A~~ 500 (681)
| ....|.-++-.|+.-.++|.|..
T Consensus 291 riNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 291 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2 44578888888888888887653
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.38 E-value=0.00043 Score=52.89 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 047571 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMID 659 (681)
Q Consensus 580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 659 (681)
...|..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|++.+++..+...-.++......+..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~ 85 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD 85 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Confidence 4567778888888888888888888888753 336677888888888888888888888877653222334444444444
Q ss_pred HHhhc
Q 047571 660 ILTRF 664 (681)
Q Consensus 660 ~~~~~ 664 (681)
.+.+.
T Consensus 86 ~l~~~ 90 (100)
T 3ma5_A 86 AKLKA 90 (100)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 44433
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.38 E-value=0.00077 Score=53.04 Aligned_cols=79 Identities=15% Similarity=0.003 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 597 QEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 597 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
++|+..|++..+.. +.+...+..+...+...|++++|++.++...+. . +.+...|..+..+|...|++++|...+++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-D-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35788889988853 457889999999999999999999999998874 1 22467899999999999999999999987
Q ss_pred cc
Q 047571 677 SS 678 (681)
Q Consensus 677 ~~ 678 (681)
..
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.35 E-value=0.00071 Score=68.41 Aligned_cols=132 Identities=5% Similarity=-0.107 Sum_probs=92.2
Q ss_pred HHHHhcCChhHHHHHHHHHhhC-----C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh-----CC-CCc-hhHH
Q 047571 80 QRFARQNKLKEALVILDYMDQQ-----G--IPVNVTTFNALITACVRTRSLVEGRLIHTHIRIN-----GL-ENN-GFLR 145 (681)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~ 145 (681)
..+..+|++++|+.++++.++. | .+....+++.|..+|...|++++|..++++.... |. .|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4466899999999999887542 2 1124567899999999999999999999887643 31 232 3578
Q ss_pred HHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHhhccC
Q 047571 146 TKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNV-YTFSCVIKSFAGAS 224 (681)
Q Consensus 146 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~ 224 (681)
+.|...|...|++++|+.+++ +|+.+++...... .|++ .+.+.+-.++...+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~--------------------------~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMIC--------------------------KAYAILLVTHGPS-HPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH--------------------------HHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHH--------------------------HHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHH
Confidence 889999999999999998775 3445544433222 2222 24455556666777
Q ss_pred chhhhHHHHHHHHH
Q 047571 225 ALMQGLKTHALLIK 238 (681)
Q Consensus 225 ~~~~a~~~~~~~~~ 238 (681)
.+.+|+.++..+.+
T Consensus 450 ~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 450 MFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888877765
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.34 E-value=0.0018 Score=48.13 Aligned_cols=82 Identities=17% Similarity=0.097 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDI 660 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 660 (681)
..|..+...+...|++++|+..+++..+.. +.+...+..+..++.+.|++++|.+.+++..+. . +.+...+..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCHHHHHHHHHH
Confidence 466777888888999999999999988753 446788888899999999999999999988764 1 2235667777777
Q ss_pred HhhcC
Q 047571 661 LTRFG 665 (681)
Q Consensus 661 ~~~~g 665 (681)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 76544
No 201
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.32 E-value=0.00085 Score=65.65 Aligned_cols=136 Identities=7% Similarity=-0.134 Sum_probs=95.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047571 480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMY 559 (681)
Q Consensus 480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 559 (681)
..+..+...+.+.|++++|++.|++..+. .+... .....+. ..+. -.....++..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~-------~~~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDAD-------GAKL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHH-------HGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHH-------HHHH-HHHHHHHHHHHHHHH
Confidence 35677778888889999999888887652 00000 0000000 0000 011356677788888
Q ss_pred HhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047571 560 GMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACR 636 (681)
Q Consensus 560 ~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 636 (681)
.+.|++++|...++++.. | +...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...++.+++.+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999998887776 3 46688889999999999999999999999853 3367778888888888887777655
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.29 E-value=0.0019 Score=52.77 Aligned_cols=87 Identities=8% Similarity=-0.122 Sum_probs=53.9
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC-CChhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--
Q 047571 555 NIKMYGMCGFLECAKLVFDAVPV-KGSITWTAIIEAYGY----NDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ-- 627 (681)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-- 627 (681)
+..+|...+..++|...|++... .+...+..|...|.. .+++++|+++|++..+.| ++..+..|...|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK 107 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence 44444444444445544444333 334556666666665 677777777777777754 45566667777766
Q ss_pred --cCCHHHHHHHHHHhhhc
Q 047571 628 --AGFADEACRIFNVMSRG 644 (681)
Q Consensus 628 --~g~~~~A~~~~~~~~~~ 644 (681)
.+++++|.++|++..+.
T Consensus 108 g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHC
Confidence 67777888777776653
No 203
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.27 E-value=0.00084 Score=64.91 Aligned_cols=141 Identities=9% Similarity=-0.068 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047571 482 WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM 561 (681)
Q Consensus 482 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 561 (681)
+..+...+.+.|++++|+..|++.... .|+... +...++.+.+...+. ...+..+..+|.+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 444555566667777777777766553 333321 122233333222111 1255666666777
Q ss_pred cCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHH-HhccCCHHHHHH
Q 047571 562 CGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSI-CNQAGFADEACR 636 (681)
Q Consensus 562 ~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~-~~~~g~~~~A~~ 636 (681)
.|++++|...++++.. | +...|..+..+|...|++++|+..|++..+. .| +...+..+... ....+..+.+.+
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766554 3 3556777777777788888888887777663 34 44445555444 234456667777
Q ss_pred HHHHhhh
Q 047571 637 IFNVMSR 643 (681)
Q Consensus 637 ~~~~~~~ 643 (681)
.|..|..
T Consensus 321 ~~~~~l~ 327 (338)
T 2if4_A 321 MYKGIFK 327 (338)
T ss_dssp -------
T ss_pred HHHHhhC
Confidence 7776654
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.25 E-value=0.0037 Score=50.97 Aligned_cols=110 Identities=10% Similarity=-0.127 Sum_probs=89.9
Q ss_pred CChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHH
Q 047571 493 GRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM----CGFLECA 568 (681)
Q Consensus 493 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 568 (681)
+++++|++.|++..+.| .|+.. +-..|...+.+++|.+.+++..+.| ++..+..+..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788899999888887 44443 6666777777888999998888864 67778888888888 7899999
Q ss_pred HHHhhhCCC-CChhhHHHHHHHHHc----CCChHHHHHHHHHHHhCC
Q 047571 569 KLVFDAVPV-KGSITWTAIIEAYGY----NDLCQEALSLFDKMRNGG 610 (681)
Q Consensus 569 ~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g 610 (681)
...|++..+ .+...+..|...|.. .++.++|+.+|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999988766 557788888888888 899999999999999987
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.04 E-value=0.02 Score=59.37 Aligned_cols=165 Identities=9% Similarity=-0.038 Sum_probs=101.7
Q ss_pred hHHHHHHHHhHhCCCCCCH-HHHHHHHHHhccccc----------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-
Q 047571 496 DDALGVFRSMQLSKHRPDS-VAMARMLSVSGQLKA----------LKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCG- 563 (681)
Q Consensus 496 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 563 (681)
++|++.++++... .|+. ..|+.--.++...|+ ++++..+++.+.+.+ +-+..+|..-..++.+.|
T Consensus 46 eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 4556666666553 2332 233333333333333 566666666666654 224555666666666666
Q ss_pred -CHHHHHHHhhhCCC---CChhhHHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----------
Q 047571 564 -FLECAKLVFDAVPV---KGSITWTAIIEAYGYND-LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA---------- 628 (681)
Q Consensus 564 -~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---------- 628 (681)
+++++.+.++++.+ .+..+|+.-...+...| .++++++.++++.+.. +-|...|.....++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 55777777776666 44667777777777777 7888888888887753 33677777766665552
Q ss_pred ----CCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCH
Q 047571 629 ----GFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRI 667 (681)
Q Consensus 629 ----g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 667 (681)
+.+++++++++..... .| +...|.-+..++.+.|+.
T Consensus 202 ~~~~~~~~eel~~~~~ai~~---~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHH---CSSCSHHHHHHHHHHSCCCCC
T ss_pred cccHHHHHHHHHHHHHHHhh---CCCCccHHHHHHHHHhcCCCc
Confidence 5578888888777653 34 366677777777776663
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.04 E-value=0.0036 Score=46.34 Aligned_cols=82 Identities=16% Similarity=0.072 Sum_probs=63.3
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047571 71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVK 150 (681)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 150 (681)
++..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34567778888899999999999999987764 3467788888888999999999999999988775 445566666655
Q ss_pred Hhhc
Q 047571 151 MYTS 154 (681)
Q Consensus 151 ~~~~ 154 (681)
++..
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.83 E-value=0.0037 Score=47.51 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=57.5
Q ss_pred CCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 047571 68 HEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRIN 136 (681)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (681)
.|.++.++..+...+.+.|++++|+..|++..+.+ +.+...|..+..++...|++++|...+++..+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677888999999999999999999999998875 346778899999999999999999999988765
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.81 E-value=0.028 Score=58.32 Aligned_cols=144 Identities=9% Similarity=-0.007 Sum_probs=112.9
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----------HHHHHHHhhhCCC---CChhhHHHHHHHHHcCC-
Q 047571 529 ALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGF----------LECAKLVFDAVPV---KGSITWTAIIEAYGYND- 594 (681)
Q Consensus 529 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~- 594 (681)
..++|.+.++.+++.+. -+..+|+.-..++...|+ ++++.+.++.+.. .+..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 34677889999888653 245566666666777777 8999999998887 45778888888898989
Q ss_pred -ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc-------
Q 047571 595 -LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAG-FADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRF------- 664 (681)
Q Consensus 595 -~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~------- 664 (681)
+++++++.++++.+.. +-|...|..-..++.+.| .++++++.++.+.+. .| +...|.....++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhccccccc
Confidence 7799999999999964 448899999999999999 899999999977653 44 467788777777663
Q ss_pred -------CCHHHHHHHHHhc
Q 047571 665 -------GRIEEAHRFREMS 677 (681)
Q Consensus 665 -------g~~~~A~~~~~~~ 677 (681)
+++++|.+++++.
T Consensus 199 ~~~~~~~~~~~eel~~~~~a 218 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNA 218 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 5678888877653
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.69 E-value=0.0021 Score=52.88 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccC-----------CHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 047571 596 CQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAG-----------FADEACRIFNVMSRGYKIEALEEHYLIMID 659 (681)
Q Consensus 596 ~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 659 (681)
+++|+..|++.++. .| +...|..+..+|...| ++++|++.|++..+ +.|+...|..-+.
T Consensus 62 ~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~ 132 (158)
T 1zu2_A 62 IQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 45777777777773 44 5667777777777654 67777777776654 3555454543333
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.68 E-value=0.12 Score=56.73 Aligned_cols=150 Identities=11% Similarity=0.144 Sum_probs=81.3
Q ss_pred HHhCCChHHHHH-HHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 047571 388 YVSNGRLEQALR-SIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDY 466 (681)
Q Consensus 388 ~~~~~~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (681)
....++++.|.+ ++..+ ++......++..+.+.|..+.|.++.+... .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 345666666655 33111 101122455556666677776665542111 11234456788888
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCC
Q 047571 467 SLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA 546 (681)
Q Consensus 467 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 546 (681)
|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.....|
T Consensus 671 A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-- 737 (814)
T 3mkq_A 671 ARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG-- 737 (814)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 888877663 456788888888888888888888887753 2333333444455444444433333322
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHh
Q 047571 547 SVPFVAAENIKMYGMCGFLECAKLVF 572 (681)
Q Consensus 547 ~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (681)
-++....+|.+.|++++|.+++
T Consensus 738 ----~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 738 ----KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----chHHHHHHHHHcCCHHHHHHHH
Confidence 1222333444455555554443
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.64 E-value=0.0088 Score=59.34 Aligned_cols=61 Identities=7% Similarity=0.028 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhc----CC-CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 616 FTFKVLLSICNQAGFADEACRIFNVMSRG----YK-IEAL-EEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
.+++.|..+|...|++++|..++++..+. +| ..|+ ..+++.|..+|...|++++|..++++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44555555555556655555555554321 11 2232 44455556666666666666655554
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.64 E-value=0.09 Score=57.80 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=64.3
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHH
Q 047571 356 MYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEI 435 (681)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 435 (681)
.....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|..+.+ |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3456788888888876664 456888888888899999988888887643 23344444446666655555
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 047571 436 HAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDE 473 (681)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 473 (681)
-+.....| -++....+|.+.|++++|.+++.+
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 54444433 223344455566666666665433
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.56 E-value=0.0025 Score=52.41 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=38.6
Q ss_pred HHHHHHhhhCCC--CC-hhhHHHHHHHHHcC-----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047571 566 ECAKLVFDAVPV--KG-SITWTAIIEAYGYN-----------DLCQEALSLFDKMRNGGFTPNHFTFKVLLSI 624 (681)
Q Consensus 566 ~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 624 (681)
++|...|++... |+ ..+|..+..+|... |++++|++.|++.++ +.|+...|...+..
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 455555555544 32 45677777777665 489999999999999 57876666544443
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.52 E-value=0.0074 Score=45.57 Aligned_cols=58 Identities=9% Similarity=0.017 Sum_probs=44.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 586 IIEAYGYNDLCQEALSLFDKMRNGGFTPNHF-TFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 586 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
....+...|++++|+..+++..+.. +.+.. .+..+..++...|++++|++.|+...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455667788888888888888753 33566 7888888888888888888888877764
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.48 E-value=0.016 Score=57.54 Aligned_cols=87 Identities=8% Similarity=0.063 Sum_probs=41.4
Q ss_pred HHcCCChHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhc----C-CCCCC-hhHHHH
Q 047571 590 YGYNDLCQEALSLFDKMRNGG---FTPN----HFTFKVLLSICNQAGFADEACRIFNVMSRG----Y-KIEAL-EEHYLI 656 (681)
Q Consensus 590 ~~~~~~~~~a~~~~~~m~~~g---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~-~~~~~~ 656 (681)
+...|++++|+.++++..+.. +.|+ ..+++.|..+|...|++++|+.++++..+. + ...|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334455555555555554321 1111 234555555555555555555555544321 1 12222 344555
Q ss_pred HHHHHhhcCCHHHHHHHHHh
Q 047571 657 MIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 657 l~~~~~~~g~~~~A~~~~~~ 676 (681)
|..+|...|++++|..++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 55555555555555555544
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.26 E-value=0.059 Score=51.21 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=58.7
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHH
Q 047571 578 KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYL 655 (681)
Q Consensus 578 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 655 (681)
.+..+|..+...+...|++++|+..++++...+ |+...|..+...+.-.|++++|.+.+++..+ +.|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 446677777777777799999999999999964 8888888888899999999999999987765 366666655
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.16 E-value=0.33 Score=37.81 Aligned_cols=141 Identities=4% Similarity=-0.047 Sum_probs=91.2
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047571 489 CIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECA 568 (681)
Q Consensus 489 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 568 (681)
+.-.|.+++..++..+... ..+..-|+.++.-....-+-+-..+.++.+-+. .| ...+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHH
Confidence 3445777777777777665 234445555555444444444444554444331 11 1234455444
Q ss_pred HHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 047571 569 KLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIE 648 (681)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 648 (681)
...+-.+.. +....+..+..+..+|.-|+-.+++..+... .+|++....-+..+|.+.|+..+|.+++.+..+. |++
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 444433322 3345667788888999999999999996553 4889999999999999999999999999988775 554
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.09 E-value=0.079 Score=39.23 Aligned_cols=65 Identities=11% Similarity=-0.017 Sum_probs=51.0
Q ss_pred ChhhHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 579 GSITWTAIIEAYGYNDL---CQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 579 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
+...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+++|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34556666666654443 799999999999853 447788888899999999999999999998875
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.08 E-value=0.011 Score=58.71 Aligned_cols=62 Identities=10% Similarity=-0.042 Sum_probs=37.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNG-----G-FTPN-HFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+++.|..+|...|++++|+.++++..+- | -.|+ ..+++.|...|...|++++|..++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4555666666666666666666554421 2 1232 35577777777777777777777776644
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.094 Score=43.74 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=92.9
Q ss_pred HHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHH
Q 047571 522 SVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALS 601 (681)
Q Consensus 522 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 601 (681)
......|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+... +..+.-.|...|+.++-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 3445678999999987765 3578899999999999999999999998775 6666667777888887777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 602 LFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 602 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
+-+.....| -++.....+...|++++++++|.+.. .-|... -.....|-.+.|.++++++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 766666554 14455566778899999999997443 223211 1122357788888888764
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.96 E-value=0.034 Score=41.77 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=60.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 047571 77 KDIQRFARQNKLKEALVILDYMDQQGIPVNVT-TFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSC 155 (681)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (681)
.....+.+.|++++|+..|+...+.. +.+.. .+..+..++...|++++|...|++..+.. +.+...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------
Confidence 35667888999999999999998764 34667 88888899999999999999999999886 333333311
Q ss_pred CChhHHHHhhhhc
Q 047571 156 GSFEDAEKVFDES 168 (681)
Q Consensus 156 g~~~~a~~~~~~~ 168 (681)
+.+.++...+++.
T Consensus 75 ~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 75 KMVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHH
Confidence 4455566666543
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.89 E-value=0.017 Score=57.49 Aligned_cols=63 Identities=13% Similarity=0.026 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNG-----G-FTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.+++.+..+|...|++++|+.++++..+- | ..| -..+++.|...|...|++++|..++++..+
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 46788888888888888888888876532 2 123 246788999999999999999999987754
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.83 E-value=0.47 Score=45.14 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=59.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047571 546 ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKV 620 (681)
Q Consensus 546 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 620 (681)
+.++.++..+...+...|++++|...++++.. |+...|..+...+...|++++|.+.|++... +.|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 45677777777777778999999999988777 6666777788888899999999999999998 4787777643
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.73 E-value=0.043 Score=44.52 Aligned_cols=66 Identities=8% Similarity=-0.076 Sum_probs=45.2
Q ss_pred CChhhHHHHHHHHHcCC---ChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 578 KGSITWTAIIEAYGYND---LCQEALSLFDKMRNGGFTP--NHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 578 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
++..+...+.+++++.+ +.++++.++++..+.+ .| +...+..|.-+|.+.|++++|.++++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45566666777777766 5567777777777753 24 3455666667777888888888888777653
No 225
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.62 E-value=2.5 Score=43.79 Aligned_cols=271 Identities=8% Similarity=-0.042 Sum_probs=124.9
Q ss_pred CCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHH
Q 047571 343 YSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPV 422 (681)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 422 (681)
.+.....-+.-+..+.+.+++......+.. ...+...-.....+....|+...|......+-..|- .....+..++..
T Consensus 68 ~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~ 145 (618)
T 1qsa_A 68 LPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSV 145 (618)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHH
Confidence 333333444556666777778777776655 333555555666777778887777776666655542 223334444444
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 047571 423 CSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVF 502 (681)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 502 (681)
+.+.|.+ ....++..+ ......|+...|..+...+..........++..+. +...+....
T Consensus 146 ~~~~g~l----------------t~~~~~~R~-~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~ 205 (618)
T 1qsa_A 146 WRASGKQ----------------DPLAYLERI-RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFA 205 (618)
T ss_dssp HHHTTCS----------------CHHHHHHHH-HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHH
T ss_pred HHHCCCC----------------CHHHHHHHH-HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHH
Confidence 4433322 222222222 34445566666666666552111111122222221 222222222
Q ss_pred HHhHhCCCCCCHHHHHHH---HHHhccccchHHHHHHHHHHHHcCCCCChhHHH----HHHHHHHhcCCHHHHHHHhhhC
Q 047571 503 RSMQLSKHRPDSVAMARM---LSVSGQLKALKLGKEIHGQVLKKDFASVPFVAA----ENIKMYGMCGFLECAKLVFDAV 575 (681)
Q Consensus 503 ~~m~~~g~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~ 575 (681)
.. +.++...-..+ +.-..+ .+.+.|...+....+.. ..+..... .++..+...+...++...+...
T Consensus 206 ~~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~ 278 (618)
T 1qsa_A 206 RT-----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (618)
T ss_dssp HH-----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred hc-----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Confidence 11 12222211111 222222 25566666666655432 12222211 1222222223233333333321
Q ss_pred CC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 576 PV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 576 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.. .+.....-.+....+.|+++.|...|+.|.... .....-.-.+..++...|+.++|..+|+.+.+
T Consensus 279 ~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 279 IMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 11 221112222233335678888888777775531 11233344566677777888888887777754
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.89 Score=37.88 Aligned_cols=130 Identities=18% Similarity=0.220 Sum_probs=92.7
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 047571 486 IDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFL 565 (681)
Q Consensus 486 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 565 (681)
.......|+++.|.++.+++ -+...|..+...+...|+++.|.+.|..... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34456789999999998776 5688999999999999999999999987653 55677788888888
Q ss_pred HHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047571 566 ECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVM 641 (681)
Q Consensus 566 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (681)
+....+-+.....+ -++.....+...|++++++++|.+. |..|.... .....|..+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~g--~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE--DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc--cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 87776654332221 3455566677789999999998553 32232211 123357778888888766
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.40 E-value=0.61 Score=42.44 Aligned_cols=102 Identities=7% Similarity=0.046 Sum_probs=66.0
Q ss_pred HHHHHHHhhhCCC--CC---hhhHHHHHHHHHcC-----CChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhcc-CCH
Q 047571 565 LECAKLVFDAVPV--KG---SITWTAIIEAYGYN-----DLCQEALSLFDKMRNGGFTP--NHFTFKVLLSICNQA-GFA 631 (681)
Q Consensus 565 ~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~-g~~ 631 (681)
...|...+++..+ |+ ...|..+...|... |+.++|.+.|++.++ +.| +..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCH
Confidence 4556666666655 43 44677777777773 788888888888887 345 366677777777764 888
Q ss_pred HHHHHHHHHhhhcCCCC--CChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 632 DEACRIFNVMSRGYKIE--ALEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 632 ~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
++|.+++++..+. ... |+.... ..++-++|..+++++
T Consensus 257 ~~a~~~L~kAL~a-~p~~~P~~~la--------n~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAI-DPESVPHNKLL--------VILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHC-CGGGCSSCHHH--------HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcC-CCCCCCChhHH--------HHHHHHHHHHHHHHh
Confidence 8888888877764 444 443322 234456666666553
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.22 E-value=0.079 Score=40.29 Aligned_cols=66 Identities=8% Similarity=-0.123 Sum_probs=49.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGG------FTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL 650 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 650 (681)
-.-.+...+...|+++.|...|++..+.- -.+....+..|..++.+.|+++.|+.++++ ...+.|+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~---al~l~P~ 78 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK---LLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH---HHHHCTT
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHH---HHhcCCC
Confidence 34467778888899999998888876531 123567788888888899999998888873 3567776
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.76 E-value=0.14 Score=37.92 Aligned_cols=68 Identities=10% Similarity=0.033 Sum_probs=40.8
Q ss_pred CCCchhHHHHHHHHHhcCC---hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 047571 69 EKNPRAIYKDIQRFARQNK---LKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRING 137 (681)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 137 (681)
|.++..+..+..++...++ .++|..+|++..+.+ +-++.....+...+.+.|++++|...|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4455555566555544433 466666666666654 3355666666666666666666666666666554
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.44 E-value=0.13 Score=46.80 Aligned_cols=107 Identities=10% Similarity=-0.056 Sum_probs=79.9
Q ss_pred cchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhc-----CCHHHHHHHhhhCCC--CC--hhhHHHHHHHHHc-CCCh
Q 047571 528 KALKLGKEIHGQVLKKDFAS-VPFVAAENIKMYGMC-----GFLECAKLVFDAVPV--KG--SITWTAIIEAYGY-NDLC 596 (681)
Q Consensus 528 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~--~~--~~~~~~l~~~~~~-~~~~ 596 (681)
+....|...+++.++.+..- +...|..+...|.+. |+.++|.+.|++... |+ ..++......++. .|+.
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35667778888887754321 367899999999994 999999999999887 63 7788888888888 4999
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571 597 QEALSLFDKMRNGGFT--PNHFTFKVLLSICNQAGFADEACRIFNVMS 642 (681)
Q Consensus 597 ~~a~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (681)
+++.+.+++....... |+.... ..+.-++|..+++++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~la--------n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLL--------VILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHH--------HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHH--------HHHHHHHHHHHHHHhH
Confidence 9999999999996555 553333 3334466766666543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.12 E-value=0.21 Score=38.87 Aligned_cols=66 Identities=8% Similarity=-0.061 Sum_probs=37.7
Q ss_pred CChhhHHHHHHHHHcCCChHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 578 KGSITWTAIIEAYGYNDLCQE---ALSLFDKMRNGGFTP--NHFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 578 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
++..+--.+.+++++.++... ++.+++++...+ .| .......|.-++.+.|++++|.++++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444555666666554433 666666666643 23 3344445555666777777777777666553
No 232
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.88 E-value=0.16 Score=41.49 Aligned_cols=29 Identities=14% Similarity=-0.001 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 651 EEHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 651 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
.+.-.-+..||.+.|+.++|+.+++.+|.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 35556688999999999999999999885
No 233
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.25 E-value=0.35 Score=39.20 Aligned_cols=79 Identities=14% Similarity=0.036 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHhCCCC--chhHHHHHHHHhhcCCChhHHHH
Q 047571 89 KEALVILDYMDQQGIPVNVTTFNALITACVRTR---SLVEGRLIHTHIRINGLEN--NGFLRTKLVKMYTSCGSFEDAEK 163 (681)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 163 (681)
..+.+.|.+....| +++..+...+..++++++ +.+++..+++...+.+ .| +...+-.|.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 44566666666665 378888888888999988 6669999999998876 33 34455566667788999999999
Q ss_pred hhhhcC
Q 047571 164 VFDESS 169 (681)
Q Consensus 164 ~~~~~~ 169 (681)
.++.+.
T Consensus 93 y~~~lL 98 (152)
T 1pc2_A 93 YVRGLL 98 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998755
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.22 E-value=0.59 Score=35.29 Aligned_cols=67 Identities=9% Similarity=-0.016 Sum_probs=49.9
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHhhCC------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 047571 71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQG------IPVNVTTFNALITACVRTRSLVEGRLIHTHIRING 137 (681)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 137 (681)
++..+..+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++.+.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34456677888888888888888888875531 12355677888888888888888888888887765
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.05 E-value=2.6 Score=33.00 Aligned_cols=65 Identities=9% Similarity=0.042 Sum_probs=45.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571 480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDF 545 (681)
Q Consensus 480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 545 (681)
......+..+..+|+-++-.+++.++.. +.+|+......+..+|.+.|+..++.+++.+.-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3445556777778888888888877543 2467777777777888888888888887777776664
No 236
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.87 E-value=7.9 Score=35.87 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=100.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHH----HHHHhHhCCCCCCHHHHHHHHHHhcc
Q 047571 451 ITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALG----VFRSMQLSKHRPDSVAMARMLSVSGQ 526 (681)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~ll~~~~~ 526 (681)
|.++..=|.+.+++++|.+++..- ...+.+.|+...|.+ +.+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 344555677778888888876432 334556677665554 45666677889998888888877766
Q ss_pred ccchH-HHHHHHHHHHHc----C--CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcC---CCh
Q 047571 527 LKALK-LGKEIHGQVLKK----D--FASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYN---DLC 596 (681)
Q Consensus 527 ~~~~~-~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 596 (681)
....+ .-..+.+.++++ | ...++.....+...|.+.|++.+|+.-|-.....+...+..++..+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 43222 234555555542 2 2347889999999999999999999877532222344444444333322 222
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 597 QEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 597 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.++ +.. ....+--|.-.|+...|..+++...+
T Consensus 185 ~e~--------------dlf-~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STV--------------AEF-FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHH--------------HHH-HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred chH--------------HHH-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 211 111 12223345567889999998887654
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.53 E-value=1.3 Score=35.47 Aligned_cols=96 Identities=6% Similarity=-0.102 Sum_probs=55.0
Q ss_pred CChhHHHHHHHHHHhcCCH------HHHHHHhhhCCC---CC-hhhHHHHHHH------HHcCCChHHHHHHHHHHHhCC
Q 047571 547 SVPFVAAENIKMYGMCGFL------ECAKLVFDAVPV---KG-SITWTAIIEA------YGYNDLCQEALSLFDKMRNGG 610 (681)
Q Consensus 547 ~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~---~~-~~~~~~l~~~------~~~~~~~~~a~~~~~~m~~~g 610 (681)
-++++|-..+....+.|+. ++..++|+++.. |+ ...|...|.. +...+|.++|.++|+.+++.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 3566777777777777777 666666665444 22 1111111111 112367777777777776542
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 611 FTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 611 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
+-=...|.....-=.+.|+.+.|.+++.....
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 22255555555555667777777777776654
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.88 E-value=9.5 Score=37.82 Aligned_cols=182 Identities=11% Similarity=0.034 Sum_probs=101.6
Q ss_pred CChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhc----ccc
Q 047571 462 GVLDYSLKLFDEMEV-----RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSG----QLK 528 (681)
Q Consensus 462 g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~ 528 (681)
|+++.|.+.+-.+.+ .| ......++..|...|+++...+.+.-+....-.. ......++..+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 667777776644432 22 2346667788888899888877776665433222 222334443332 122
Q ss_pred chHHH--HHHHHHHH---HcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHH
Q 047571 529 ALKLG--KEIHGQVL---KKDFAS---VPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWTAIIEAYG 591 (681)
Q Consensus 529 ~~~~a--~~~~~~~~---~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~ 591 (681)
..+.. ..+.+.+. +..+-. .......|...|...|++.+|..++..+.. .+ ...|..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 22211 11111111 001111 123445677778888888888877776543 11 345666677777
Q ss_pred cCCChHHHHHHHHHHH----hCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571 592 YNDLCQEALSLFDKMR----NGGFTPN--HFTFKVLLSICNQAGFADEACRIFNVMSRG 644 (681)
Q Consensus 592 ~~~~~~~a~~~~~~m~----~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 644 (681)
..+++.+|..+++++. ....+|+ ...+...+..+...+++.+|.+.|.++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7888888887777753 2222222 234556666677778888877777766654
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.22 E-value=2.7 Score=30.82 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571 595 LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDI 660 (681)
Q Consensus 595 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 660 (681)
|.=+..+-++.+....+-|++......+.+|.+.+++.-|.++++.++.+-+.. ..+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHHH
Confidence 555677778888888889999999999999999999999999999988753333 4567666543
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.17 E-value=12 Score=34.77 Aligned_cols=165 Identities=7% Similarity=0.055 Sum_probs=97.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHH----HHHHHHcCcCCCHHHHHHHHHHhhcc
Q 047571 351 SSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRS----IAWMQQEGFRPDVVTVATVIPVCSQL 426 (681)
Q Consensus 351 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~ 426 (681)
.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++...+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 4555667778888888887543 23446667776665554 55556678888888888777776553
Q ss_pred CChh-HHHHHHHHHHH----hCC--CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhc---CChh
Q 047571 427 KALN-HGKEIHAYAVK----NQF--LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIEN---GRLD 496 (681)
Q Consensus 427 ~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---~~~~ 496 (681)
...+ .-.++++.+++ .|- .-++.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 3211 22344444443 332 246677888888999999999999988633323455555555544443 4333
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 047571 497 DALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVL 541 (681)
Q Consensus 497 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 541 (681)
++--.. -..++ -|.-.++...|..+++...
T Consensus 186 e~dlf~--------------~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 186 TVAEFF--------------SRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH--------------HHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred hHHHHH--------------HHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 321111 11122 2334567777777776554
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.69 E-value=1.6 Score=42.46 Aligned_cols=79 Identities=11% Similarity=0.017 Sum_probs=60.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh----cCCCCCChhHHHHH
Q 047571 582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR----GYKIEALEEHYLIM 657 (681)
Q Consensus 582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~l 657 (681)
+...++..+...|++++|+..++.+.... +-+...+..++.++.+.|+..+|++.|+.+.+ .+|+.|...+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34556777788999999999998888752 44888899999999999999999999887644 46899986654444
Q ss_pred HHHH
Q 047571 658 IDIL 661 (681)
Q Consensus 658 ~~~~ 661 (681)
-.++
T Consensus 252 ~~il 255 (388)
T 2ff4_A 252 ERIL 255 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.61 E-value=1.6 Score=46.16 Aligned_cols=53 Identities=11% Similarity=-0.042 Sum_probs=45.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047571 587 IEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVM 641 (681)
Q Consensus 587 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (681)
..-|...|+++-|+++.++.+. +.| +-.+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445678999999999999988 456 6789999999999999999999988877
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.28 E-value=3.9 Score=32.81 Aligned_cols=99 Identities=10% Similarity=0.155 Sum_probs=65.2
Q ss_pred CCCCCchhHHHHHHHHHhcCCh------hHHHHHHHHHhhCCCCCChhh----HHHHHH---HHHhcCChhHHHHHHHHH
Q 047571 67 LHEKNPRAIYKDIQRFARQNKL------KEALVILDYMDQQGIPVNVTT----FNALIT---ACVRTRSLVEGRLIHTHI 133 (681)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~----~~~ll~---~~~~~~~~~~a~~~~~~~ 133 (681)
..|.|+++|...+..+-+.|++ +...++|++.... +||+... |--+.- .+...++.++|.++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4577899999999999999999 8888899988764 5664321 111111 112347888888888888
Q ss_pred HHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhh
Q 047571 134 RINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDE 167 (681)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 167 (681)
.+.+-.- ...|....+.-.+.|+++.|.+++..
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 7663222 55566656666667777777777764
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.09 E-value=19 Score=35.67 Aligned_cols=255 Identities=9% Similarity=-0.012 Sum_probs=120.3
Q ss_pred ChhhHHHHHHHHHHc-----CCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHh-CCCCCcHHHhHHHHHH----HhcC
Q 047571 190 RYRGVLFNYMKMREL-----GVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKN-GFVDYLILRTSLIDMY----FKCG 259 (681)
Q Consensus 190 ~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~----~~~~ 259 (681)
++..|++.+..+.+. ...-.......++..|...|+++...+.+..+.+. |..+. ....+++.+ ....
T Consensus 31 ~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 31 DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcCC
Confidence 455555554443321 12223444666777777778887777766665543 32221 122333222 2223
Q ss_pred ChH--HHHHHHhccCC---C-------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhh
Q 047571 260 KIK--LARRVFDETGD---R-------DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWAR 327 (681)
Q Consensus 260 ~~~--~a~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 327 (681)
..+ .-..+.+.... . .......|...+...|++.+|.+++..+...-...+....
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~------------- 175 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE------------- 175 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH-------------
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH-------------
Confidence 222 22333333322 1 1123456778888999999999999988653111221111
Q ss_pred cccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC------CC----hhhHHHHHHHHHhCCChHHH
Q 047571 328 KLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE------RN----EILWTALMSGYVSNGRLEQA 397 (681)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~----~~~~~~li~~~~~~~~~~~A 397 (681)
-...+...++.|...+++..|..++..+.. ++ ...|...+..+...+++.+|
T Consensus 176 ------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a 237 (445)
T 4b4t_P 176 ------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEV 237 (445)
T ss_dssp ------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred ------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 011222344445555555555554444321 01 12344555555666667666
Q ss_pred HHHHHHHHHc-CcCCCHHHHHH----HHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--CChHHHHHH
Q 047571 398 LRSIAWMQQE-GFRPDVVTVAT----VIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKC--GVLDYSLKL 470 (681)
Q Consensus 398 ~~~~~~m~~~-g~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~ 470 (681)
...|.+..+. ...-|...+.. ++.+..-.+....-..++........-++...|..++.+|... .+++...+.
T Consensus 238 ~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~ 317 (445)
T 4b4t_P 238 AQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKT 317 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHH
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHH
Confidence 6666655432 11112211111 1111111111112222222222322235566778888888653 456777777
Q ss_pred HhhCCCC
Q 047571 471 FDEMEVR 477 (681)
Q Consensus 471 ~~~~~~~ 477 (681)
|.....+
T Consensus 318 ~~~~L~~ 324 (445)
T 4b4t_P 318 YEPVLNE 324 (445)
T ss_dssp TCSSTTT
T ss_pred HHHHhcc
Confidence 7665543
No 245
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.75 E-value=2 Score=33.39 Aligned_cols=63 Identities=8% Similarity=-0.026 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHhccCCHHH---HHHHHHHhhhcCCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 613 PNHFTFKVLLSICNQAGFADE---ACRIFNVMSRGYKIEA--LEEHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 613 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
|+..+-..+.+++.+.....+ ++.+++.+.+. + .| .......|.-++.+.|++++|+++++.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444444555555444333 44444444432 1 12 1233334444455555555555554443
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.72 E-value=5.2 Score=29.34 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047571 87 KLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVK 150 (681)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 150 (681)
+.-+..+-++.+...+.-|++......+++|.+.+++..|.++++-.+..- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 555677778888888888999999999999999999999999999887654 333556766664
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.79 E-value=2.9 Score=40.73 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----hCCCCchhHHH
Q 047571 76 YKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRI-----NGLENNGFLRT 146 (681)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 146 (681)
..++..+...|++.+++..+..+.... +.+...+..++.++.+.|+..+|.+.|+...+ .|+.|++.+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344556666777777777777776553 45666777777777777777777777777643 37777766543
No 248
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=87.76 E-value=29 Score=36.18 Aligned_cols=84 Identities=11% Similarity=0.059 Sum_probs=46.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--
Q 047571 383 ALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK-- 460 (681)
Q Consensus 383 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 460 (681)
.....+.-.|+++.|++.+-.. ...+.+.+.+.+..+.-.+- ...++.. +.+ .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~--~~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLT--KKP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCccccc--CCC-cc-cccHHHHHHHHHHHh
Confidence 3556677889999999887754 35677777776665544332 1111111 001 11 2235667777765
Q ss_pred -cCChHHHHHHHhhCCCC
Q 047571 461 -CGVLDYSLKLFDEMEVR 477 (681)
Q Consensus 461 -~g~~~~a~~~~~~~~~~ 477 (681)
..++.+|.++|--+...
T Consensus 368 ~~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLITLN 385 (661)
T ss_dssp TTTCHHHHHHHHHGGGGS
T ss_pred hcCCHHHHHHHHHHHhcc
Confidence 57888888877666433
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.44 E-value=7.2 Score=44.33 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=11.6
Q ss_pred HHHHHHhcCChHHHHHHHhhC
Q 047571 454 LMIMYSKCGVLDYSLKLFDEM 474 (681)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~ 474 (681)
+..+|...|++++|.++|++.
T Consensus 848 ~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 344455556666666666554
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.39 E-value=19 Score=33.66 Aligned_cols=134 Identities=10% Similarity=0.031 Sum_probs=84.1
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHH----HHHHHHcCcCCCHHHHHHHHHHhhc
Q 047571 350 RSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRS----IAWMQQEGFRPDVVTVATVIPVCSQ 425 (681)
Q Consensus 350 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 425 (681)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++...+.++++|.....-++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 35566668888888888887533 23446667776655544 4556667888998888877777666
Q ss_pred cCChh-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCC
Q 047571 426 LKALN-HGKEIHAYAV----KNQ--FLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGR 494 (681)
Q Consensus 426 ~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 494 (681)
...-+ .=..+.+.++ +.| ..-+...-..+...|.+.+++.+|+..|---.++....|..++.-+...+.
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 54321 1133333333 333 234566777788899999999999998853333333566555555554443
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.90 E-value=4.9 Score=31.27 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571 595 LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDI 660 (681)
Q Consensus 595 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 660 (681)
|.-+..+-++.+....+-|++......+.+|.+.+|+..|.++|+.++.+ ..+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 44456677777878888999999999999999999999999999999875 33445567766543
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.92 E-value=25 Score=32.81 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHH----HHHHhHhCCCCCCHHHHHHHHHHhcc
Q 047571 451 ITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALG----VFRSMQLSKHRPDSVAMARMLSVSGQ 526 (681)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~ll~~~~~ 526 (681)
|.++..=|.+.+++++|.+++..- ...+.+.|+...|.+ +++-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 344555577778888888776332 234555666555444 34556667888888888888877766
Q ss_pred ccchH-HHHHHHHHHHHc----C--CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHH
Q 047571 527 LKALK-LGKEIHGQVLKK----D--FASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAY 590 (681)
Q Consensus 527 ~~~~~-~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 590 (681)
....+ .-..+.+.++++ | ..-++.....+...|.+.+++.+|+.-|--...+....+..++..+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEW 177 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 55322 223444554432 2 3456888899999999999999998887432222234454444333
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.68 E-value=7.3 Score=30.45 Aligned_cols=70 Identities=9% Similarity=-0.075 Sum_probs=47.8
Q ss_pred CChhhHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC
Q 047571 578 KGSITWTAIIEAYGYNDL---CQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL 650 (681)
Q Consensus 578 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 650 (681)
++..+--.+.+++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+ ..|+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---~eP~ 110 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERN 110 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCC
Confidence 445555556667776554 456888888888754112356666777788888999999888887765 3555
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.22 E-value=52 Score=35.84 Aligned_cols=301 Identities=9% Similarity=-0.031 Sum_probs=148.8
Q ss_pred HHHhcCCHHHHHHHHhhcCCC----Chh--hHHHHHHHHHhCCChHHHHHHHHHHHHcCc-------CCCHHHHHHHHHH
Q 047571 356 MYCKCRDMNSAWRVFYETEER----NEI--LWTALMSGYVSNGRLEQALRSIAWMQQEGF-------RPDVVTVATVIPV 422 (681)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-------~p~~~~~~~ll~~ 422 (681)
+....|+.++++.+++..... +.. .=..+.-+.+..|..+++..++.......- .+....-..+--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455667777777777776541 211 222233345555655567776666554311 0111111222222
Q ss_pred hhccCC-hhHHHHHHHHHHHhCCCCChhHHH--HHHHHHHhcCChHHHHHHHhhCCC-CCcch--HHHHHHHHHhcCChh
Q 047571 423 CSQLKA-LNHGKEIHAYAVKNQFLPNVSIIT--SLMIMYSKCGVLDYSLKLFDEMEV-RNVIS--WTAMIDSCIENGRLD 496 (681)
Q Consensus 423 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~--~~~li~~~~~~~~~~ 496 (681)
+.-.|. -+++.+.+..+.... .+...... +|...+...|+.+....++..+.+ .+... .-.+.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 222332 234455555544422 11111122 233334566777666666665432 22222 233334455778888
Q ss_pred HHHHHHHHhHhCCCCCCHHHHH---HHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH--HHhcCCHHHHHHH
Q 047571 497 DALGVFRSMQLSKHRPDSVAMA---RMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM--YGMCGFLECAKLV 571 (681)
Q Consensus 497 ~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~ 571 (681)
.+..+.+.+.... .| ..-|. .+.-+|+..|+......++..+.... +..+-...+.+ ....|+.+.+.++
T Consensus 542 ~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888887631 22 22233 33446777788877777888877642 22333333333 3345666667777
Q ss_pred hhhCCC-CChhhHH--HHHHHHHcCCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---------CHHHHHHHH
Q 047571 572 FDAVPV-KGSITWT--AIIEAYGYNDL-CQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAG---------FADEACRIF 638 (681)
Q Consensus 572 ~~~~~~-~~~~~~~--~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~ 638 (681)
++.+.. .|...-. .+.-+....|+ ..++++++..+.. .+|..+-...+.++...| +....++.+
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L 693 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNF 693 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHH
Confidence 765554 3433222 23333334444 3678889999875 556655544554444433 233333333
Q ss_pred HHhhhcCCCCCChhHHHHHHHHHhhcC
Q 047571 639 NVMSRGYKIEALEEHYLIMIDILTRFG 665 (681)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~l~~~~~~~g 665 (681)
......-...++...-..+..++...|
T Consensus 694 ~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 694 LSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp HHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 322221022344455555555555444
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.07 E-value=10 Score=27.69 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=54.6
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHH
Q 047571 122 SLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKM 201 (681)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m 201 (681)
..++|.-+-+++...+. ...+--+-+..+.+.|++++|..+.+.+.-||..+|-++-.+ +.| -.+.+..-+..+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlG--l~s~le~rL~~l 94 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLG--LGAALDRRLAGL 94 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcc--cHHHHHHHHHHH
Confidence 56788888888877763 444444556677889999999999999998999888877543 444 444555555455
Q ss_pred HHcC
Q 047571 202 RELG 205 (681)
Q Consensus 202 ~~~g 205 (681)
...|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 5554
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.93 E-value=4.6 Score=42.78 Aligned_cols=55 Identities=11% Similarity=-0.095 Sum_probs=47.9
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 622 LSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
..-|...|+++-|+++-++.... .|+ ..+|..|..+|.+.|+++.|+-.++.+|-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 44567789999999999988763 554 89999999999999999999999999984
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.97 E-value=16 Score=29.00 Aligned_cols=80 Identities=9% Similarity=-0.063 Sum_probs=52.9
Q ss_pred HHHHHHHhhhC-C-CCChhhHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 047571 565 LECAKLVFDAV-P-VKGSITWTAIIEAYGYNDL---CQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFN 639 (681)
Q Consensus 565 ~~~a~~~~~~~-~-~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (681)
+...++-+..- . .++..+--.+.+++.+..+ ..+++.+++++...+..-.......|.-++.+.|++++|.++.+
T Consensus 22 L~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 22 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp HHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44444445433 2 2455555566777777654 55788888888875422244556667778899999999999998
Q ss_pred Hhhhc
Q 047571 640 VMSRG 644 (681)
Q Consensus 640 ~~~~~ 644 (681)
.+.+.
T Consensus 102 ~lL~~ 106 (144)
T 1y8m_A 102 TLFEH 106 (144)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88764
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.80 E-value=12 Score=29.09 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047571 87 KLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVK 150 (681)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 150 (681)
|.-+..+-++.+...++-|++......+++|.+.+|+..|.++|+-.+..- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455677777777788888999999999999999999999999999887654 344556776664
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.71 E-value=10 Score=27.63 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHH
Q 047571 122 SLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKM 201 (681)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m 201 (681)
..++|.-+-+++...+. ...+--+-+..+.+.|++++|..+.+.+.-||..+|-++-.+ +.| -.+.+..-+..+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlG--l~s~le~rL~~l 95 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLG--LGSALESRLNRL 95 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcc--cHHHHHHHHHHH
Confidence 56778888888877663 444444556677788999999999998888888888877554 333 334444444444
Q ss_pred HHcC
Q 047571 202 RELG 205 (681)
Q Consensus 202 ~~~g 205 (681)
...|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 4444
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.39 E-value=17 Score=35.10 Aligned_cols=125 Identities=9% Similarity=-0.036 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhCCC-----C---ChhhHHHHHHHHHcC-CChHHHHHHHHHHHh----CC-CCCCHHH
Q 047571 552 AAENIKMYGMCGFLECAKLVFDAVPV-----K---GSITWTAIIEAYGYN-DLCQEALSLFDKMRN----GG-FTPNHFT 617 (681)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~----~g-~~p~~~~ 617 (681)
...|...|.+.|+.++...++..... + .......++..+... +..+.-.++..+..+ .. .-.....
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777888777777776655 1 123455667666653 333444444444332 11 0001112
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 618 FKVLLSICNQAGFADEACRIFNVMSRGYKIEAL----EEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
=.-|+..|...|++.+|.+++..+.+...-..+ .+.+..-++.|...|++.++...+.+
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 225777888888888888888877664222111 45566677778888888888877654
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.26 E-value=40 Score=32.47 Aligned_cols=228 Identities=8% Similarity=-0.019 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHh-CCCC---ChhHHHHHHHHHHhc-CChHHHHHHHhhCCC---CCcchH--
Q 047571 413 VVTVATVIPVCSQLKALNHGKEIHAYAVKN-QFLP---NVSIITSLMIMYSKC-GVLDYSLKLFDEMEV---RNVISW-- 482 (681)
Q Consensus 413 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~---~~~~~~-- 482 (681)
......+...+.+.|+.++..+++...... +.-| .......+++.+... +..+.-.++..+..+ .+-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788889999999888888765431 1122 234466777777764 334444444444432 122233
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH-----HHHHHHHHHhccccchHHHHHHHHHHHHc--CCCCChhH
Q 047571 483 ----TAMIDSCIENGRLDDALGVFRSMQLSKHRPDS-----VAMARMLSVSGQLKALKLGKEIHGQVLKK--DFASVPFV 551 (681)
Q Consensus 483 ----~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 551 (681)
.-++..|...|++.+|.+++.++.+.=-..|. ..+..-+..|...++..++...+...... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 24678899999999999999888763212221 13445566777888999999988877653 23344444
Q ss_pred HHHH----HHHHH-hcCCHHHHHHHhhhCCC----CC------hhhHHHHHHHHHcCCChHHHHHHH-HHHHhCCCCCCH
Q 047571 552 AAEN----IKMYG-MCGFLECAKLVFDAVPV----KG------SITWTAIIEAYGYNDLCQEALSLF-DKMRNGGFTPNH 615 (681)
Q Consensus 552 ~~~l----~~~~~-~~g~~~~a~~~~~~~~~----~~------~~~~~~l~~~~~~~~~~~~a~~~~-~~m~~~g~~p~~ 615 (681)
...+ ...+. ..+++.+|...|-+... .+ ...|..+. +... ++..+.-.++ .+....-..|..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl~-~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIML-GQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHT-TCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHc-CCHHHHHHHhccccccccCCccH
Confidence 3322 33455 67888888777654321 11 11232222 2222 2222222222 121111123444
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571 616 FTFKVLLSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
..+..++.+ ...+++.+..++++....
T Consensus 257 ~~l~~L~~a-~~~~dl~~f~~iL~~~~~ 283 (394)
T 3txn_A 257 DAMKSVAEA-SHKRSLADFQAALKEYKK 283 (394)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHSTT
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHH
Confidence 445555554 455677777777776544
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.93 E-value=14 Score=26.96 Aligned_cols=86 Identities=10% Similarity=0.014 Sum_probs=58.9
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHh
Q 047571 428 ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQL 507 (681)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 507 (681)
..++|..|-+.+...+. ...+--+-+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666665542 22222233455678899999999999998899988877644 577888888888878877
Q ss_pred CCCCCCHHHHH
Q 047571 508 SKHRPDSVAMA 518 (681)
Q Consensus 508 ~g~~p~~~~~~ 518 (681)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 55555443
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.81 E-value=9.8 Score=29.75 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=11.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571 652 EHYLIMIDILTRFGRIEEAHRFREMS 677 (681)
Q Consensus 652 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 677 (681)
+.+.-|.-++.+.|++++|+++++.+
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33344444444445555444444443
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.78 E-value=15 Score=29.21 Aligned_cols=66 Identities=3% Similarity=-0.213 Sum_probs=40.1
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHhhhCCC--CC--hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 047571 546 ASVPFVAAENIKMYGMCGFLE---CAKLVFDAVPV--KG--SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP 613 (681)
Q Consensus 546 ~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 613 (681)
.+++.+-..+..++.+..+.+ ++..+++.+.. |. -...--|.-++.+.|++++|.+..+.+.+ +.|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCC
Confidence 466666666666776665533 45555555443 21 22233455567777888888887777777 456
No 265
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.51 E-value=27 Score=29.99 Aligned_cols=109 Identities=10% Similarity=0.009 Sum_probs=54.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571 547 SVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN 626 (681)
Q Consensus 547 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 626 (681)
+++.+-...+.++++.|+.+....+.+.+..++...-...+.++...|+. +++..+.++.+ .++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444455555555555544444444444445544444455555555543 34444545443 456666666667777
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhc
Q 047571 627 QAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRF 664 (681)
Q Consensus 627 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 664 (681)
+.|. .++...+..+.+. ++...-...+.++.+.
T Consensus 169 ~~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAET----GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHC-
T ss_pred HhCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHhc
Confidence 7666 4455555555442 2333444444444433
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.28 E-value=15 Score=26.87 Aligned_cols=86 Identities=9% Similarity=0.067 Sum_probs=57.6
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHh
Q 047571 428 ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQL 507 (681)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 507 (681)
..++|..|-+.+...+. ...+--+-+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666655442 22222233445678899999999999998899988877644 467777877777777777
Q ss_pred CCCCCCHHHHH
Q 047571 508 SKHRPDSVAMA 518 (681)
Q Consensus 508 ~g~~p~~~~~~ 518 (681)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 55555443
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=79.34 E-value=22 Score=32.22 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=30.0
Q ss_pred HHHHHHhcCChHHHHHHHhccC-C---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047571 251 LIDMYFKCGKIKLARRVFDETG-D---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN 310 (681)
Q Consensus 251 li~~~~~~~~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 310 (681)
.+...+..|+.+-+..+++... . .|....+.+.. .+..+......++++.+.+.|..++
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCC
Confidence 3444556677777766665422 1 12222233322 3344555445566666666666554
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.01 E-value=68 Score=33.20 Aligned_cols=112 Identities=9% Similarity=-0.127 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHH----HHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHH
Q 047571 291 LRWEALDCARWMIREGIYPNSVVLTILLP----VIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSA 366 (681)
Q Consensus 291 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 366 (681)
+.+.|...+....+.+. .+......+-. .....+....+...+...... . .+.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-S--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-C--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc-C--CChHHHHHHHHHHHHCCCHHHH
Confidence 77888888888765442 23322222222 222233133333444433222 1 2222233444556678999999
Q ss_pred HHHHhhcCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047571 367 WRVFYETEERN---EILWTALMSGYVSNGRLEQALRSIAWMQQ 406 (681)
Q Consensus 367 ~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 406 (681)
...|..+.... ....-=+.+++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999987642 22233345677788999999999988864
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.76 E-value=12 Score=33.50 Aligned_cols=26 Identities=8% Similarity=-0.079 Sum_probs=16.2
Q ss_pred hHHHHHHHHHh--hcCCHHHHHHHHHhc
Q 047571 652 EHYLIMIDILT--RFGRIEEAHRFREMS 677 (681)
Q Consensus 652 ~~~~~l~~~~~--~~g~~~~A~~~~~~~ 677 (681)
.-...|+.++. ..|+.++|.++-++.
T Consensus 99 ~w~~~ll~Al~~~~~G~~~~A~~lr~~A 126 (273)
T 1zbp_A 99 ELTKSLVSFNLSMVSQDYEQVSELALQI 126 (273)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 34555556553 458888888766543
No 270
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.20 E-value=25 Score=28.78 Aligned_cols=99 Identities=11% Similarity=0.033 Sum_probs=68.4
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHhC--C---
Q 047571 72 PRAIYKDIQRFARQNKLKEALVILDYMDQQG-IPVNV-------TTFNALITACVRTRSLVEGRLIHTHIRING--L--- 138 (681)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~--- 138 (681)
.-.+..-++.+...|.++.|+-+.+.+.... ..|+. .++..+..++...+++..|...|++..... +
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457778999999999999998888764331 22332 356777888899999999999999964321 1
Q ss_pred -------------------CCchhHHHHHHHHhhcCCChhHHHHhhhhcCC
Q 047571 139 -------------------ENNGFLRTKLVKMYTSCGSFEDAEKVFDESSS 170 (681)
Q Consensus 139 -------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 170 (681)
..+...--.+..+|.+.+++++|+.+++.++.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 11123334466677777888888887777663
No 271
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.22 E-value=1.1e+02 Score=34.69 Aligned_cols=53 Identities=8% Similarity=0.046 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhc
Q 047571 111 NALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDES 168 (681)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 168 (681)
..++..+...+..+.+.++.... +.++...-.+..++...|++++|.+.|.+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34555666667776666554332 334444445566777778888888888764
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.35 E-value=49 Score=29.73 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=11.0
Q ss_pred HHHHHhcCChHHHHHHHhcc
Q 047571 252 IDMYFKCGKIKLARRVFDET 271 (681)
Q Consensus 252 i~~~~~~~~~~~a~~~~~~~ 271 (681)
+...+..|+.+-...+++.-
T Consensus 109 L~~A~~~~~~~~~~~Ll~~g 128 (285)
T 1wdy_A 109 FMEAAVYGKVKALKFLYKRG 128 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHhC
Confidence 33445566666666555543
No 273
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=74.09 E-value=1.1e+02 Score=33.49 Aligned_cols=264 Identities=12% Similarity=-0.015 Sum_probs=138.3
Q ss_pred HHHHHhcCChHHHHHHHhccCCC----Chh--hHHHHHHHHHhcCChHHHHHHHHHHHHcCC--C-----CChhhHHHHH
Q 047571 252 IDMYFKCGKIKLARRVFDETGDR----DIV--VWGSMIAGFAHNRLRWEALDCARWMIREGI--Y-----PNSVVLTILL 318 (681)
Q Consensus 252 i~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~-----p~~~~~~~ll 318 (681)
--+....|+.++++.+++..... +.. .=..+.-+.+..|...++..++.......- . +....-..+-
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 34566788999999999886652 222 223344455666766678887777654321 0 1111111222
Q ss_pred HHHhhhhhh-cccchhhhhhhhccCCCCCchHHh--HHHHHHHhcCCHHHHHHHHhhcCCC-C--hhhHHHHHHHHHhCC
Q 047571 319 PVIGEAWAR-KLGQEVHAYVLKNERYSEELFVRS--SLVDMYCKCRDMNSAWRVFYETEER-N--EILWTALMSGYVSNG 392 (681)
Q Consensus 319 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~li~~~~~~~ 392 (681)
-+++..|.- +.+.+.+..+..... ....... ++.-.++-.|+-+....++..+.+. + +.-.-.+.-++...|
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC
Confidence 222222321 233444444433211 1111112 2333344567777777776654322 2 222333444555788
Q ss_pred ChHHHHHHHHHHHHcCcCCCHH-HHH---HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 047571 393 RLEQALRSIAWMQQEGFRPDVV-TVA---TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL 468 (681)
Q Consensus 393 ~~~~A~~~~~~m~~~g~~p~~~-~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (681)
+.+.+..+++.+... .+.. -|. ++.-+|+..|+.....+++..+.... ..++.....+.-++...|+.+.+.
T Consensus 539 ~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 539 RQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp CGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred ChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 888888888888764 2222 232 23346778889888888888887642 223333333333444567777777
Q ss_pred HHHhhCCC-CCcchH--HHHHHHHHhcCCh-hHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 047571 469 KLFDEMEV-RNVISW--TAMIDSCIENGRL-DDALGVFRSMQLSKHRPDSVAMARMLSVS 524 (681)
Q Consensus 469 ~~~~~~~~-~~~~~~--~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 524 (681)
++++.+.+ .|..+- ..+.-+....|+. .+++.++..+.. .+|..+-..-+.++
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 77765543 343332 2233344445543 578888888864 44555443333333
No 274
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=72.01 E-value=45 Score=28.24 Aligned_cols=87 Identities=10% Similarity=0.021 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 047571 552 AAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFA 631 (681)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 631 (681)
-...+.++++.|+.+....+.+.+..++...-...+.++...++ .+++..+.++.. .++...-...+.++.+.|.
T Consensus 93 r~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~- 167 (201)
T 3ltj_A 93 RQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-ERAVEPLIKALK---DEDGWVRQSAADALGEIGG- 167 (201)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 33333334444433333333333333443333334444444443 233444444443 3455555555666666655
Q ss_pred HHHHHHHHHhhh
Q 047571 632 DEACRIFNVMSR 643 (681)
Q Consensus 632 ~~A~~~~~~~~~ 643 (681)
.++...+..+.+
T Consensus 168 ~~~~~~L~~~l~ 179 (201)
T 3ltj_A 168 ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh
Confidence 334444444443
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=71.85 E-value=21 Score=33.76 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=47.9
Q ss_pred HhHHHHHHHhcCChHHHHHHHhccCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047571 248 RTSLIDMYFKCGKIKLARRVFDETGDRD---IVVWGSMIAGFAHNRL--RWEALDCARWMIREGIYPNSVVLTILLPVI 321 (681)
Q Consensus 248 ~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 321 (681)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+...+++..+...|+-+.......+.+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 3567788888889999999998887763 2344455555544333 355777888888777666555544444433
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.58 E-value=9.8 Score=37.55 Aligned_cols=97 Identities=9% Similarity=-0.075 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhCCC----CC--hhhHHHHHHHHHcCCChHHHHHHHHHHHh---CCCCCCHHH--
Q 047571 549 PFVAAENIKMYGMCGFLECAKLVFDAVPV----KG--SITWTAIIEAYGYNDLCQEALSLFDKMRN---GGFTPNHFT-- 617 (681)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~-- 617 (681)
..+...+...|.+.|+++.|.+.+.++.. .+ ...+-..++.+...+++..+...+++... .+-.|+...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 34566777888888888888888877665 11 44566677777778888888877777643 232333322
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhcC
Q 047571 618 FKVLLSICNQAGFADEACRIFNVMSRGY 645 (681)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 645 (681)
...-+..+...+++..|.+.|-+....+
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 1222233455677888888777776653
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.00 E-value=16 Score=32.79 Aligned_cols=71 Identities=13% Similarity=-0.016 Sum_probs=51.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCC--CCchhHHHHHHH
Q 047571 79 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGL--ENNGFLRTKLVK 150 (681)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 150 (681)
+..+.+.|+++++++....-.+.. |-|...-..+++.+|-.|+|+.|..-++...+... .+....|..+|.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~ 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence 456778888888888888877764 55788888888888888888888888887776642 222334555544
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=69.34 E-value=53 Score=28.03 Aligned_cols=162 Identities=15% Similarity=0.057 Sum_probs=71.4
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHH
Q 047571 455 MIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGK 534 (681)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 534 (681)
+..+.+.|..+....+.+.+..+|...-...+.++.+.++.+ +...+.++.. .++...-...+.++...++.+..
T Consensus 40 ~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~- 114 (211)
T 3ltm_A 40 AYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERAV- 114 (211)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-
T ss_pred HHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHH-
Confidence 333333333333333333333344444344444444444422 2222222222 34444444444444444443222
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 047571 535 EIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN 614 (681)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 614 (681)
..+..+.+ .+++.+-...+.++++.|..+....+.+.+..++...-...+.++.+.+. .++...+.++.+ .++
T Consensus 115 ~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~ 187 (211)
T 3ltm_A 115 EPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE---TGT 187 (211)
T ss_dssp HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH---HCC
T ss_pred HHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh---CCC
Confidence 22222221 34555556666666666665444444444444555555555555555554 455555666554 234
Q ss_pred HHHHHHHHHHHhcc
Q 047571 615 HFTFKVLLSICNQA 628 (681)
Q Consensus 615 ~~~~~~l~~~~~~~ 628 (681)
...-...+.++.+.
T Consensus 188 ~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 188 GFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhc
Confidence 44444444444433
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.77 E-value=40 Score=29.45 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=15.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 047571 78 DIQRFARQNKLKEALVILDYMDQQGIPV 105 (681)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 105 (681)
.+...++.|+.+....+++.+.+.|..+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3444555566666666665555555443
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=68.60 E-value=91 Score=30.43 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=10.4
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 047571 354 VDMYCKCRDMNSAWRVFYE 372 (681)
Q Consensus 354 ~~~~~~~~~~~~a~~~~~~ 372 (681)
+...+..|+.+-+..+++.
T Consensus 216 L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 216 LHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344556666666655554
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.77 E-value=59 Score=28.32 Aligned_cols=187 Identities=10% Similarity=-0.040 Sum_probs=95.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCCchhH--HHHHHHHhhcCCChhHHHHhhhhcCCCCC---ccHHHHHHHHHHcCC
Q 047571 114 ITACVRTRSLVEGRLIHTHIRINGLENNGFL--RTKLVKMYTSCGSFEDAEKVFDESSSESV---YPWNALLRGAVIAGK 188 (681)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~ 188 (681)
+...+..|+.+.+..+++.+...|..++... -...+...+..|+.+-+..+++.-..++. ..++.+ ...+..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~- 90 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA-HLACEHR- 90 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcC-
Confidence 4555667888888888877766665444321 12334555667888777777765333322 223333 3334455
Q ss_pred cChhhHHHHHHHHHHcCCCCChh--hHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcH---HHhHHHHHHHhcCChHH
Q 047571 189 KRYRGVLFNYMKMRELGVQLNVY--TFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLI---LRTSLIDMYFKCGKIKL 263 (681)
Q Consensus 189 ~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~~~~~~ 263 (681)
+.+-+..+++.....++.++.. .-.+.+...+..|+. ++++.+.+.|..++.. .-.+.+...+..|+.+-
T Consensus 91 -~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~ 165 (241)
T 1k1a_A 91 -SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM 165 (241)
T ss_dssp -CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred -CHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHH
Confidence 5544444433321111122211 112233344445554 4455555666655432 12345556677888888
Q ss_pred HHHHHhccCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 047571 264 ARRVFDETGDR---DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSV 312 (681)
Q Consensus 264 a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 312 (681)
+.-+++.-... |..-.+ .+...+..|+.+ +++.+.+.|..++..
T Consensus 166 v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~ga~~~~~ 212 (241)
T 1k1a_A 166 VQLLLQHGANVNAQMYSGSS-ALHSASGRGLLP----LVRTLVRSGADSSLK 212 (241)
T ss_dssp HHHHHHTTCCTTCBCTTSCB-HHHHHHHHTCHH----HHHHHHHTTCCTTCC
T ss_pred HHHHHHcCCCCCCcCCCCCC-HHHHHHHcCCHH----HHHHHHhcCCCCCCc
Confidence 88777764433 222222 233344556644 445556677666543
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=65.07 E-value=19 Score=32.99 Aligned_cols=50 Identities=4% Similarity=-0.157 Sum_probs=23.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhh
Q 047571 114 ITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDE 167 (681)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 167 (681)
+...+..|+.+-+..+ .+.|..++..--...+...+..|+.+-+..+++.
T Consensus 35 L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 35 SYYAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 3444455665444433 3344333322122334444556666666555553
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=63.86 E-value=66 Score=27.12 Aligned_cols=40 Identities=13% Similarity=0.018 Sum_probs=15.2
Q ss_pred HHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 047571 252 IDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRL 291 (681)
Q Consensus 252 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 291 (681)
+..+.+.+..+....+.+.+..++...-...+.++...+.
T Consensus 35 ~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 35 AYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3333333333333333333333444333334444444443
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=63.20 E-value=48 Score=25.82 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=44.9
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCC--hHHHHHHHHHHHHcCcCCCHH
Q 047571 351 SSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGR--LEQALRSIAWMQQEGFRPDVV 414 (681)
Q Consensus 351 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ 414 (681)
..++.-|...|+.++|.+.++++..| ...+...+..++-+.+. .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 56788888999999999999999876 23345555555555532 456778888887776554433
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.48 E-value=1.1e+02 Score=29.04 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=46.3
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHcCcCCCHHHH
Q 047571 350 RSSLVDMYCKCRDMNSAWRVFYETEERN---EILWTALMSGYVSNGR--LEQALRSIAWMQQEGFRPDVVTV 416 (681)
Q Consensus 350 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~~ 416 (681)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+....++..+...|+-+.....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4678888999999999999999998773 3345555555555433 35677788888877765444433
No 286
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=62.47 E-value=1.2e+02 Score=29.58 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=36.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchh--HHHHHHHHhh
Q 047571 78 DIQRFARQNKLKEALVILDYMDQQGIPVNVTT--FNALITACVRTRSLVEGRLIHTHIRINGLENNGF--LRTKLVKMYT 153 (681)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 153 (681)
.+...+..|+.+-+..+ .+.|..++... ....+...+..|+.+-+..+ .+.|..++.. .-...+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHH
Confidence 45555566665544433 34455444321 22344445555665443333 3344333221 1112233344
Q ss_pred cCCChhHHHHhhhh
Q 047571 154 SCGSFEDAEKVFDE 167 (681)
Q Consensus 154 ~~g~~~~a~~~~~~ 167 (681)
..|+.+-+.-+++.
T Consensus 89 ~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 89 RIGHTNMVKLLLEN 102 (437)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhC
Confidence 55666555555554
No 287
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=62.02 E-value=58 Score=28.24 Aligned_cols=18 Identities=6% Similarity=0.169 Sum_probs=8.6
Q ss_pred HHHHhcCChHHHHHHHhc
Q 047571 253 DMYFKCGKIKLARRVFDE 270 (681)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~ 270 (681)
...+..|+.+-+..+++.
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334445555555444443
No 288
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=60.94 E-value=70 Score=29.54 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=44.3
Q ss_pred hHHHHHHHhcCChHHHHHHHhccCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChhhHHHH
Q 047571 249 TSLIDMYFKCGKIKLARRVFDETGDRD---IVVWGSMIAGFAHNRL--RWEALDCARWMIREGIYPNSVVLTIL 317 (681)
Q Consensus 249 ~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~l 317 (681)
..++.-|...|+.++|.+.++++..|. ...+..+..++-+.++ .+...+++..+.+.|+-+.......+
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 457778888889999999998887762 2344444444444332 35567778888777766555444333
No 289
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.51 E-value=47 Score=28.21 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=58.3
Q ss_pred HHHHHHhhhCCC--CCh---hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 047571 566 ECAKLVFDAVPV--KGS---ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFN 639 (681)
Q Consensus 566 ~~a~~~~~~~~~--~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (681)
+++...|..... .|. ..|-..+..+ ..++..++.++|..|..+|+-- -+..|......+...|++.+|.++|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444443 343 3444444444 2555779999999999998765 56778888889999999999999999
Q ss_pred HhhhcCCCCC
Q 047571 640 VMSRGYKIEA 649 (681)
Q Consensus 640 ~~~~~~~~~~ 649 (681)
.-.+. +-.|
T Consensus 140 ~GI~~-~A~P 148 (202)
T 3esl_A 140 LGAEN-NCRP 148 (202)
T ss_dssp HHHHT-TCBS
T ss_pred HHHHc-CCcc
Confidence 88775 6677
No 290
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=60.49 E-value=46 Score=28.00 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=32.0
Q ss_pred HHHHHhcCChHHHHHHHhcc-CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 047571 252 IDMYFKCGKIKLARRVFDET-GD---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNS 311 (681)
Q Consensus 252 i~~~~~~~~~~~a~~~~~~~-~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 311 (681)
+...+..|+.+-+..+++.- .. +|..-++.+..+.........-.++++.+.+.|..++.
T Consensus 110 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 34456677777777777654 22 23333444444433332234445666667777766653
No 291
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=58.32 E-value=76 Score=26.01 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=50.1
Q ss_pred hcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC---------------C-CH-HHHHHHHH
Q 047571 561 MCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT---------------P-NH-FTFKVLLS 623 (681)
Q Consensus 561 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~---------------p-~~-~~~~~l~~ 623 (681)
-.|.+.++.-++.........-|..| +|-+.+++.+|+..++.+.+..+. | |. ..++.+..
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 34666666666655443333333333 345678888888888888754433 2 33 44566677
Q ss_pred HHhccCCHHHHHHHHHHh
Q 047571 624 ICNQAGFADEACRIFNVM 641 (681)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~ 641 (681)
.|.+.|+.++|+..+..-
T Consensus 123 lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhhh
Confidence 788889999998888743
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=57.53 E-value=31 Score=30.08 Aligned_cols=81 Identities=9% Similarity=-0.002 Sum_probs=34.7
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhH---HHHHHHHhh
Q 047571 79 IQRFARQNKLKEALVILDYMDQQGIPVNVT--TFNALITACVRTRSLVEGRLIHTHIRINGLENNGFL---RTKLVKMYT 153 (681)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~ 153 (681)
+...++.|+.+....+ .+.|..++.. .-...+...+..|+.+- ++.+.+.|..++... -...+...+
T Consensus 13 l~~A~~~g~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~t~L~~A~ 84 (240)
T 3eu9_A 13 IVKATQYGIYERCREL----VEAGYDVRQPDKENVTLLHWAAINNRIDL----VKYYISKGAIVDQLGGDLNSTPLHWAT 84 (240)
T ss_dssp HHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred HHHHHHcCChHHHHHH----HHcCCCcCCCCCCCCCHHHHHHHhCCHHH----HHHHHHcCCcchhhcCCcCCChhHHHH
Confidence 3344556665544433 3344433221 11234445555666543 334444443322110 112333344
Q ss_pred cCCChhHHHHhhhh
Q 047571 154 SCGSFEDAEKVFDE 167 (681)
Q Consensus 154 ~~g~~~~a~~~~~~ 167 (681)
..|+.+-+..+++.
T Consensus 85 ~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 85 RQGHLSMVVQLMKY 98 (240)
T ss_dssp HHTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHc
Confidence 45666655555543
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.15 E-value=78 Score=25.47 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCC-chhHHHHHHHHhhcCCChhHHHHhhhhcC
Q 047571 126 GRLIHTHIRINGLEN-NGFLRTKLVKMYTSCGSFEDAEKVFDESS 169 (681)
Q Consensus 126 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 169 (681)
+..+|..|...|+-. -...|......+-..|++.+|.++|+.-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555554422 22334444445555555555555555433
No 294
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=55.78 E-value=27 Score=31.20 Aligned_cols=56 Identities=5% Similarity=-0.075 Sum_probs=32.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhh-------HHHHHHHHH--hcCChhHHHHHHHHH
Q 047571 78 DIQRFARQNKLKEALVILDYMDQQGIPVNVTT-------FNALITACV--RTRSLVEGRLIHTHI 133 (681)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 133 (681)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 45566677888877777777766665554332 223333322 456666666665554
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.52 E-value=43 Score=27.02 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=44.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCC--hHHHHHHHHHHHHcCcCCCHH
Q 047571 351 SSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGR--LEQALRSIAWMQQEGFRPDVV 414 (681)
Q Consensus 351 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ 414 (681)
..++.-|...|+.++|.+.++++..| ...+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 56888888999999999999999876 23345555555555432 456777888887776554433
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.34 E-value=62 Score=25.21 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=37.3
Q ss_pred hHHHHHHHhcCChHHHHHHHhccCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChhh
Q 047571 249 TSLIDMYFKCGKIKLARRVFDETGDRD---IVVWGSMIAGFAHNRL--RWEALDCARWMIREGIYPNSVV 313 (681)
Q Consensus 249 ~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~ 313 (681)
..++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+.+..++..+...|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 446666777777777777777766552 2333444444444332 3456677777776665554443
No 297
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=54.07 E-value=39 Score=26.94 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=6.4
Q ss_pred HhcCChHHHHHHHhc
Q 047571 256 FKCGKIKLARRVFDE 270 (681)
Q Consensus 256 ~~~~~~~~a~~~~~~ 270 (681)
+..|+.+-+.-+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 344444444444433
No 298
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=53.70 E-value=1e+02 Score=26.51 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=10.1
Q ss_pred HHHHHhcCChHHHHHHHhc
Q 047571 252 IDMYFKCGKIKLARRVFDE 270 (681)
Q Consensus 252 i~~~~~~~~~~~a~~~~~~ 270 (681)
+...+..|+.+-+..+++.
T Consensus 143 L~~A~~~~~~~~v~~Ll~~ 161 (231)
T 3aji_A 143 MHRAAAKGNLKMVHILLFY 161 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3444455666655555543
No 299
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.16 E-value=53 Score=32.26 Aligned_cols=60 Identities=2% Similarity=-0.164 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCCChhHHHHhhhhc
Q 047571 109 TFNALITACVRTRSLVEGRLIHTHIRING--LENNGFLRTKLVKMYTSCGSFEDAEKVFDES 168 (681)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 168 (681)
+...+...+.+.|+++.|.+.+.++.... ...-...+-.+++.+...+++..+...+++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45556666666666666666666665542 2223345555666666666666666665544
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.97 E-value=29 Score=30.59 Aligned_cols=19 Identities=16% Similarity=-0.160 Sum_probs=9.1
Q ss_pred HHHHHhcCCHHHHHHHhhh
Q 047571 556 IKMYGMCGFLECAKLVFDA 574 (681)
Q Consensus 556 ~~~~~~~g~~~~a~~~~~~ 574 (681)
++.+....++++|..++++
T Consensus 25 LDv~IA~r~feeAv~lle~ 43 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLD 43 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 3444444555555544443
No 301
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=51.55 E-value=46 Score=29.02 Aligned_cols=82 Identities=10% Similarity=0.122 Sum_probs=39.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhH--HHHHHHHhhc
Q 047571 79 IQRFARQNKLKEALVILDYMDQQGIPVNVTT--FNALITACVRTRSLVEGRLIHTHIRINGLENNGFL--RTKLVKMYTS 154 (681)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 154 (681)
+...++.|+.+ +++.+.+.|..++... -...+...+..|+.+ +++.+.+.|..++... -...+...+.
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLE----AVKYLIKAGALVDPKDAEGSTCLHLAAK 86 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHTTTCCCCCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHH
Confidence 44455667655 3444455554443321 112344445556654 3444445554433211 1223444456
Q ss_pred CCChhHHHHhhhhc
Q 047571 155 CGSFEDAEKVFDES 168 (681)
Q Consensus 155 ~g~~~~a~~~~~~~ 168 (681)
.|+.+-+..+++.-
T Consensus 87 ~~~~~~~~~Ll~~~ 100 (237)
T 3b7b_A 87 KGHYEVVQYLLSNG 100 (237)
T ss_dssp TTCHHHHHHHHTTT
T ss_pred cCCHHHHHHHHhCC
Confidence 67777766666643
No 302
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.42 E-value=1.4e+02 Score=26.99 Aligned_cols=16 Identities=0% Similarity=-0.159 Sum_probs=8.3
Q ss_pred HHHHHHHcCcCCCHHH
Q 047571 400 SIAWMQQEGFRPDVVT 415 (681)
Q Consensus 400 ~~~~m~~~g~~p~~~~ 415 (681)
+++.+.+.|..++...
T Consensus 210 ~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 210 MLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHTTSCBCSTTTT
T ss_pred HHHHHHHcCCCCCCCC
Confidence 4444555565555544
No 303
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.11 E-value=1.1e+02 Score=25.89 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=56.5
Q ss_pred HHHHHHHH-----cCCCCChhHHHHHHHHHHh--cCCHHHHHHHhhhCCCCC-----hhhHHHHHHHHHcCCChHHHHHH
Q 047571 535 EIHGQVLK-----KDFASVPFVAAENIKMYGM--CGFLECAKLVFDAVPVKG-----SITWTAIIEAYGYNDLCQEALSL 602 (681)
Q Consensus 535 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~ 602 (681)
.+++...+ ....-|+......+..-.. ++...++..+|..|...+ ...|......+...|++++|.++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 137 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVL 137 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45555554 2345566555544444333 555778888888777633 55688888889999999999999
Q ss_pred HHHHHhCCCCC
Q 047571 603 FDKMRNGGFTP 613 (681)
Q Consensus 603 ~~~m~~~g~~p 613 (681)
|+.-++.+-.|
T Consensus 138 y~~GI~~~A~P 148 (202)
T 3esl_A 138 LELGAENNCRP 148 (202)
T ss_dssp HHHHHHTTCBS
T ss_pred HHHHHHcCCcc
Confidence 99999988888
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.34 E-value=81 Score=26.38 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=8.3
Q ss_pred HhcCChHHHHHHHhc
Q 047571 256 FKCGKIKLARRVFDE 270 (681)
Q Consensus 256 ~~~~~~~~a~~~~~~ 270 (681)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 445555555555554
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.62 E-value=53 Score=26.51 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=35.9
Q ss_pred hHHHHHHHhcCChHHHHHHHhccCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChhh
Q 047571 249 TSLIDMYFKCGKIKLARRVFDETGDRD---IVVWGSMIAGFAHNRL--RWEALDCARWMIREGIYPNSVV 313 (681)
Q Consensus 249 ~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~ 313 (681)
+.++.-|...|+.++|.+.++++..|. ...+..+..++-+.++ .+.+..++..+...|+-+....
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 345666667777777777777766541 2333444444444222 3456666666666665544433
No 306
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.98 E-value=71 Score=28.10 Aligned_cols=88 Identities=15% Similarity=0.074 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhC--CCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 047571 76 YKDIQRFARQNKLKEALVILDYMDQQ--GIPV----NVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLV 149 (681)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 149 (681)
-.-+..+..+.+|++|.+++++..+. +.++ ........+..-.....-..+..+.+.+. . .++.......+
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v 98 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHH
Confidence 34578899999999999999887532 2222 11222333333333333344444544442 2 44555566667
Q ss_pred HHhhcCCChhHHHHhhh
Q 047571 150 KMYTSCGSFEDAEKVFD 166 (681)
Q Consensus 150 ~~~~~~g~~~~a~~~~~ 166 (681)
..+.+.|+.+.|.++|=
T Consensus 99 ~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHH
Confidence 77888888888888774
No 307
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=45.26 E-value=66 Score=30.48 Aligned_cols=58 Identities=10% Similarity=-0.044 Sum_probs=27.7
Q ss_pred HHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047571 252 IDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYP 309 (681)
Q Consensus 252 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 309 (681)
+...+..|+.+-+.-+++.-...+...-.+.+...+..|+.+-+..+++.....|..+
T Consensus 57 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH
Confidence 3444556666666666655443322111223333445566655555555444434433
No 308
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=43.50 E-value=3e+02 Score=28.62 Aligned_cols=18 Identities=6% Similarity=-0.023 Sum_probs=11.1
Q ss_pred ChhHHHHHHHHHhhCCCC
Q 047571 87 KLKEALVILDYMDQQGIP 104 (681)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~ 104 (681)
.+.+.+..|++....|.+
T Consensus 36 ~Ya~~I~~~N~~r~~~~~ 53 (661)
T 2qx5_A 36 NYARIVFQFNNSRQANGN 53 (661)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 345566777777666643
No 309
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=42.90 E-value=1.8e+02 Score=25.93 Aligned_cols=48 Identities=4% Similarity=-0.139 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047571 411 PDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG 462 (681)
Q Consensus 411 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (681)
+|...-...+.++.+.+..+ +...+..+.. .++..+-...+.++.+.|
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQD-AVRLAIEFCS---DKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHH-HHHHHHHHHT---CSSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCCch-HHHHHHHHHc---CCCHHHHHHHHHHHHHhc
Confidence 34444444455555555322 2222222222 234444444445555544
No 310
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=42.87 E-value=1.6e+02 Score=25.22 Aligned_cols=58 Identities=9% Similarity=-0.025 Sum_probs=32.4
Q ss_pred HHHHHHhcCChHHHHHHHhccCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047571 251 LIDMYFKCGKIKLARRVFDETGDR---DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYP 309 (681)
Q Consensus 251 li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 309 (681)
.+...+..|+.+-+.-+++.-... |..-. +.+...+..|+.+-+..+++.+.+.|..+
T Consensus 124 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 344455667777666666653332 22222 23344456677777767777777766544
No 311
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=42.01 E-value=1.6e+02 Score=25.24 Aligned_cols=152 Identities=11% Similarity=0.017 Sum_probs=66.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHhCC----CCchhHHHHHHHHh
Q 047571 79 IQRFARQNKLKEALVILDYMDQQGIPVNVT--TFNALITACVRTRSLVEGRLIHTHIRINGL----ENNGFLRTKLVKMY 152 (681)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~ 152 (681)
+...++.|+.+....+++. .|..++.. .-.+.+...+..|+.+-+..+++.-..... ..+..-. ..+...
T Consensus 7 L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~-t~L~~A 82 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ-TALHIA 82 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTC-CHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCc-CHHHHH
Confidence 4445566666555444432 13333221 112234445556666555554443221100 0011112 233444
Q ss_pred hcCCChhHHHHhhhhcCCCCC----------------ccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhh--HH
Q 047571 153 TSCGSFEDAEKVFDESSSESV----------------YPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYT--FS 214 (681)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~ 214 (681)
+..|+.+-+..+++.-...+. .-.+.+.. .+..| +. ++++.+.+.|..++... -.
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~~--~~----~~v~~Ll~~ga~~~~~d~~g~ 155 (232)
T 2rfa_A 83 VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSF-AACVG--SE----EIVRLLIEHGADIRAQDSLGN 155 (232)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHH-HHHHT--CH----HHHHHHHHTTCCTTCCCTTSC
T ss_pred HHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHH-HHHcC--CH----HHHHHHHHCCCCCCCCCCCCC
Confidence 556777766666665332221 11223322 23333 32 23333444555544321 12
Q ss_pred HHHHHhhccCchhhhHHHHHHHHHhCC
Q 047571 215 CVIKSFAGASALMQGLKTHALLIKNGF 241 (681)
Q Consensus 215 ~ll~~~~~~~~~~~a~~~~~~~~~~g~ 241 (681)
+.+...+..|+.+-+..+++.+.+.|.
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 344455556666666666666666654
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.95 E-value=67 Score=30.44 Aligned_cols=39 Identities=8% Similarity=-0.025 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCCCcHH--HhHHHHHHHhcCChHHHHHHHhc
Q 047571 232 THALLIKNGFVDYLIL--RTSLIDMYFKCGKIKLARRVFDE 270 (681)
Q Consensus 232 ~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~ 270 (681)
+++.+.+.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 155 ~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 155 MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 3344444455444221 12233444566777766666654
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=39.50 E-value=2.9e+02 Score=27.17 Aligned_cols=125 Identities=15% Similarity=0.035 Sum_probs=71.0
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHH
Q 047571 542 KKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTF 618 (681)
Q Consensus 542 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 618 (681)
+.|++-....|..-.+.+...|++++|.++-...+. .+..+.+.+-..=...|+..-.+.+|.-+.+.| ..|..--
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ES 432 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYES 432 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHH
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHh
Confidence 344444455555556666777777777777665544 444455444443334566666777777777776 5565444
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 619 KVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
.-+++.-...|+.+-...++. +. ++..+.+.-. ++ +..+..-|..++.+
T Consensus 433 lEl~r~vL~q~r~~llekWl~---e~-KL~~SEeLGD-lv----k~~d~~LAl~IY~~ 481 (494)
T 1bpo_A 433 LELCRPVLQQGRKQLLEKWLK---ED-KLECSEELGD-LV----KSVDPTLALSVYLR 481 (494)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH---HT-CSCCCHHHHH-HH----HHHCSHHHHHHHHH
T ss_pred hHHhHHHHhccHHHHHHHHHh---cC-CccccHHhHh-hh----hhcCHHHHHHHHHH
Confidence 445566666777666666655 32 5555433222 22 34456666666554
No 314
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.21 E-value=61 Score=28.74 Aligned_cols=90 Identities=11% Similarity=-0.058 Sum_probs=46.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCcCCCHHH-------HHHHHHHhh--ccCChhHHHHHHHHHHHhC---------CCC-
Q 047571 386 SGYVSNGRLEQALRSIAWMQQEGFRPDVVT-------VATVIPVCS--QLKALNHGKEIHAYAVKNQ---------FLP- 446 (681)
Q Consensus 386 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~~- 446 (681)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +..
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 344566777777777777766665555332 233333332 5677776666666543311 110
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 047571 447 NVSIITSLMIMYSKCGVLDYSLKLFDEMEV 476 (681)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 476 (681)
+..-.+ .+...+..|+.+-+.-+++.-..
T Consensus 90 d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 90 YYRGQT-ALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SEESBC-HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccCCCC-HHHHHHHcCCHHHHHHHHhCCCC
Confidence 111122 33344556777777777765443
No 315
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.16 E-value=94 Score=21.50 Aligned_cols=62 Identities=10% Similarity=0.112 Sum_probs=40.4
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571 96 DYMDQQGIPVNVTTFNALITACVRTR-SLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF 158 (681)
Q Consensus 96 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (681)
+.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|-...+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34566776666544 45566666554 5667788888887776666666766667776666543
No 316
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.45 E-value=2.4e+02 Score=25.96 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=15.8
Q ss_pred HHHHHHHhhccCchhhhHHHHHHH
Q 047571 213 FSCVIKSFAGASALMQGLKTHALL 236 (681)
Q Consensus 213 ~~~ll~~~~~~~~~~~a~~~~~~~ 236 (681)
...++.-|...|+.++|...++++
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 345666666677777777776665
No 317
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=38.40 E-value=1.2e+02 Score=24.91 Aligned_cols=88 Identities=17% Similarity=0.099 Sum_probs=57.6
Q ss_pred hHHHHHHH-HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC------------
Q 047571 582 TWTAIIEA-YGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIE------------ 648 (681)
Q Consensus 582 ~~~~l~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------ 648 (681)
-|..|+.. +.-.|.+.+++-++...- .-...-|.. -+|-+..++..|+..++.+... ++.
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~--LCy~klKdYkkA~~~le~il~~-kvd~d~~~d~~~~~f 106 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYES--LCYKKKKDYKKAIKSLESILEG-KVERDPDVDARIQEM 106 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTT-CSBCCCCCCHHHHTT
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc-ccccCccccccccee
Confidence 34444332 345788888887764321 112222322 2567889999999999998753 333
Q ss_pred ---C-C-hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571 649 ---A-L-EEHYLIMIDILTRFGRIEEAHRFREM 676 (681)
Q Consensus 649 ---~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 676 (681)
| | ...|+.+...+...|+.+||+..+.+
T Consensus 107 fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 107 FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 2 2 34577788888999999999998754
No 318
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.29 E-value=2.2e+02 Score=26.68 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=37.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhCC-ChHHHHHHHHHHHHcCcC
Q 047571 351 SSLVDMYCKCRDMNSAWRVFYETEERN---EILWTALMSGYVSNG-RLEQALRSIAWMQQEGFR 410 (681)
Q Consensus 351 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~ 410 (681)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.. .-+.+..++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 467888888899999999999998763 222333333332221 234555666777666544
No 319
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=36.09 E-value=1.2e+02 Score=26.57 Aligned_cols=88 Identities=8% Similarity=-0.059 Sum_probs=45.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHHhc---CChhHHHHHHHHHHHhCCCC-------
Q 047571 78 DIQRFARQNKLKEALVILDYMDQQGIPVNV-------TTFNALITACVRT---RSLVEGRLIHTHIRINGLEN------- 140 (681)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~------- 140 (681)
.+...++.|+.+....+++.+.+.|..++. .-.+ .+...+.. |+.+-+..+++.-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t-~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKT-CLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBC-HHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCC-HHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 455566778888777777777666654443 2222 33333444 66666666665544332110
Q ss_pred ---chhHHHHHHHHhhcCCChhHHHHhhhh
Q 047571 141 ---NGFLRTKLVKMYTSCGSFEDAEKVFDE 167 (681)
Q Consensus 141 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 167 (681)
|..-. ..+...+..|+.+-+..+++.
T Consensus 84 ~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ 112 (256)
T 2etb_A 84 TDEFYQGH-SALHIAIEKRSLQCVKLLVEN 112 (256)
T ss_dssp CSTTTTTC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccCC-CHHHHHHHcCCHHHHHHHHHc
Confidence 11112 223334456666666666654
No 320
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=36.05 E-value=2.6e+02 Score=25.73 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhH---HHHHHHHhhcCCChhHHHHhhhh
Q 047571 111 NALITACVRTRSLVEGRLIHTHIRINGLENNGFL---RTKLVKMYTSCGSFEDAEKVFDE 167 (681)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~ 167 (681)
+..|...++.|+.+.+..++ +.|..++... -.+-+...+..|+.+-+.-+++.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL----~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ 81 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 81 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 34444555667765544443 4555544221 11223334556666666555554
No 321
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.57 E-value=1.6e+02 Score=23.91 Aligned_cols=61 Identities=7% Similarity=-0.048 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--ChhhHHHHHH-H-----HHhcCChhHHHHHHHHHHH
Q 047571 74 AIYKDIQRFARQNKLKEALVILDYMDQQGIPV--NVTTFNALIT-A-----CVRTRSLVEGRLIHTHIRI 135 (681)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 135 (681)
.|...+..+-. |++-+|-++|+..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45555555555 99999999999997765455 5566777777 2 2346888888888888765
No 322
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.22 E-value=2.1e+02 Score=24.37 Aligned_cols=176 Identities=11% Similarity=-0.001 Sum_probs=82.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhH--HHHHHHHhhcC
Q 047571 78 DIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFL--RTKLVKMYTSC 155 (681)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 155 (681)
.+...++.|+.+....++..-...-..++..-.+ .+...+..|+.+ +++.+.+.|..++... -...+...+..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 3666777888888887777543211111222222 334445566654 4445555565444321 12233445566
Q ss_pred CChhHHHHhhhhcCCCCC---ccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhh--HHHHHHHhhccCchhhhH
Q 047571 156 GSFEDAEKVFDESSSESV---YPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYT--FSCVIKSFAGASALMQGL 230 (681)
Q Consensus 156 g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~ 230 (681)
|+.+-+..+++.-...+. .-++.+.. .+..+ +.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~--~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~--- 153 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHY-AASKN--RHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK--- 153 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTT--CHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH---
T ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHcC--CHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH---
Confidence 888777777765433222 22333333 33444 443 3344455666555332 123344444555544
Q ss_pred HHHHHHHHhCCCCCcHH--HhHHHHHHHhcCChHHHHHHHh
Q 047571 231 KTHALLIKNGFVDYLIL--RTSLIDMYFKCGKIKLARRVFD 269 (681)
Q Consensus 231 ~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~ 269 (681)
+++.+.+.|..++... -.+-+...+..|+.+-+.-+++
T Consensus 154 -~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 154 -MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp -HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 3444455665544211 1122333344555444444443
No 323
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.28 E-value=2.1e+02 Score=24.16 Aligned_cols=55 Identities=11% Similarity=0.084 Sum_probs=38.2
Q ss_pred HhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCC-----hhHHHHHHHHHHHhCC
Q 047571 389 VSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKA-----LNHGKEIHAYAVKNQF 444 (681)
Q Consensus 389 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 444 (681)
++..+.+.|+-.+-+|.+.| .|....-..++.+....|. ...|...++.....|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 45678999999999999999 7777766777777666553 2344445555555554
No 324
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=33.95 E-value=2.8e+02 Score=25.49 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh---HHHHHHHHHhcCChhHHHHHHHHHHHhCCCCc
Q 047571 76 YKDIQRFARQNKLKEALVILDYMDQQGIPVNVTT---FNALITACVRTRSLVEGRLIHTHIRINGLENN 141 (681)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 141 (681)
+..+..-++.|+.+-+..++ +.|..++... -.+-|...+..|+.+ +.+.+.+.|..++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL----~~Gadvn~~~~~~g~TpLh~A~~~g~~~----iv~~Ll~~ga~~~ 86 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPV 86 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred ChHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCcCHHHHHHHcCCHH----HHHHHHHcCCchh
Confidence 45566667888876655554 4566655322 123455555667654 4455556665544
No 325
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=33.05 E-value=1.7e+02 Score=26.28 Aligned_cols=16 Identities=6% Similarity=0.056 Sum_probs=7.9
Q ss_pred HHhcCChHHHHHHHhc
Q 047571 255 YFKCGKIKLARRVFDE 270 (681)
Q Consensus 255 ~~~~~~~~~a~~~~~~ 270 (681)
.+..|+.+-+..+++.
T Consensus 132 A~~~~~~~~v~~Ll~~ 147 (285)
T 3d9h_A 132 ACVSGSWDCVNLLLQH 147 (285)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHC
Confidence 3445555555555443
No 326
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=32.29 E-value=2.3e+02 Score=25.43 Aligned_cols=19 Identities=0% Similarity=0.135 Sum_probs=10.5
Q ss_pred HHHHHhcCChHHHHHHHhc
Q 047571 252 IDMYFKCGKIKLARRVFDE 270 (681)
Q Consensus 252 i~~~~~~~~~~~a~~~~~~ 270 (681)
+...+..|+.+-+..+++.
T Consensus 194 L~~A~~~~~~~~v~~Ll~~ 212 (285)
T 3d9h_A 194 LYLACENQQRACVKKLLES 212 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCcHHHHHHHHHC
Confidence 3444556666666555554
No 327
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=31.82 E-value=3.4e+02 Score=25.72 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCC
Q 047571 452 TSLMIMYSKCGVLDYSLKLFDEMEVRN 478 (681)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 478 (681)
..++.-|...|+.++|.+.++++..|+
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~ 42 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPK 42 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCch
Confidence 345555666666666666666665553
No 328
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=31.60 E-value=91 Score=23.76 Aligned_cols=12 Identities=17% Similarity=-0.075 Sum_probs=5.0
Q ss_pred HHHHHHHHhhcC
Q 047571 654 YLIMIDILTRFG 665 (681)
Q Consensus 654 ~~~l~~~~~~~g 665 (681)
+...++.+.+.|
T Consensus 56 ~rd~~r~a~~~g 67 (119)
T 1wty_A 56 PRAAIRGAFQVG 67 (119)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 334444444444
No 329
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.01 E-value=2.6e+02 Score=28.00 Aligned_cols=60 Identities=8% Similarity=0.039 Sum_probs=40.7
Q ss_pred hhHHHHHHHHhhcCCChhHHHHhhhhcCCCCC-ccHHHHH-------HHHHHcCCcChhhHHHHHHHHHH
Q 047571 142 GFLRTKLVKMYTSCGSFEDAEKVFDESSSESV-YPWNALL-------RGAVIAGKKRYRGVLFNYMKMRE 203 (681)
Q Consensus 142 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~ll-------~~~~~~~~~~~~~a~~~~~~m~~ 203 (681)
...+|.+++.|...+.++.|..+..+..-|.. .+-+..+ +.+...+ ++.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~--~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQL--DYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 45678889999999999999999988765533 3322222 2233344 88888888777544
No 330
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=30.83 E-value=2.9e+02 Score=24.59 Aligned_cols=58 Identities=21% Similarity=0.116 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571 548 VPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRN 608 (681)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 608 (681)
++.+-...+.++.+.|+.+....+...+..++ .-...+.++.+.|+ .+++..+.++.+
T Consensus 205 ~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 33444444444444444333333333333333 11233444444444 345555555554
No 331
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.43 E-value=2.1e+02 Score=22.84 Aligned_cols=63 Identities=8% Similarity=0.075 Sum_probs=44.4
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChh
Q 047571 96 DYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFE 159 (681)
Q Consensus 96 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 159 (681)
+.+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 446677776544 345566777777778889999999998887777777777777777777543
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.34 E-value=72 Score=24.84 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=24.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 047571 78 DIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRS 122 (681)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 122 (681)
++..+...+..-.|.++++.+.+.+...+..|....|..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444455555555666666666555544555555555555555543
No 333
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.28 E-value=3e+02 Score=25.72 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=34.3
Q ss_pred hHHHHHHHhcCChHHHHHHHhccCCCCh---hhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCh
Q 047571 249 TSLIDMYFKCGKIKLARRVFDETGDRDI---VVWGSMIAGFAHNR-LRWEALDCARWMIREGIYPNS 311 (681)
Q Consensus 249 ~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~ 311 (681)
..++.-|...|+.++|.+.++++..|.- .....+..++-+.. ..+.+..++..+.+.|+-+..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~ 81 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTA 81 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHH
Confidence 4467777777888888888888776531 22222222222211 234455666666665554433
No 334
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.24 E-value=68 Score=25.33 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=22.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 047571 78 DIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTR 121 (681)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 121 (681)
++..+...+++-.|.++++.+.+.+...+..|....|..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44444444455555555555555554445555555555555444
No 335
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.10 E-value=2.3e+02 Score=23.05 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC
Q 047571 597 QEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL 650 (681)
Q Consensus 597 ~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 650 (681)
+.+.++|..|..+|+-- -+..|......+...|++.+|.++|+.-.+. +-.|.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 34777888888888765 4566777888888889999999999887775 66674
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.09 E-value=2.6e+02 Score=30.81 Aligned_cols=50 Identities=6% Similarity=-0.144 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC-CC--hhHHHHHHHHHhhcC
Q 047571 616 FTFKVLLSICNQAGFADEACRIFNVMSRGYKIE-AL--EEHYLIMIDILTRFG 665 (681)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~g 665 (681)
.-|..++..+.+.+.++.++++-+...+..... ++ ...|..++++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 468889999999999999999888887642211 11 345777777776655
No 337
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.08 E-value=1.4e+02 Score=20.52 Aligned_cols=61 Identities=5% Similarity=0.148 Sum_probs=40.7
Q ss_pred HHHHHcCcCCCHHHHHHHHHHhhccC-ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 047571 402 AWMQQEGFRPDVVTVATVIPVCSQLK-ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV 463 (681)
Q Consensus 402 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (681)
+.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34667777776654 34556666554 566788888888877666666776667777766664
No 338
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.77 E-value=1.8e+02 Score=23.01 Aligned_cols=62 Identities=8% Similarity=0.063 Sum_probs=43.6
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571 96 DYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF 158 (681)
Q Consensus 96 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (681)
+.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3456777765554 3455666666667778999999998887777777776777777776654
No 339
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=28.01 E-value=1.7e+02 Score=27.33 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=55.0
Q ss_pred ChhHHHHHHHHHhhCC-----CCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571 87 KLKEALVILDYMDQQG-----IPVNV---TTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF 158 (681)
Q Consensus 87 ~~~~a~~~~~~~~~~~-----~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (681)
+-.+|...|..+.... ..++. ..+...+..+.+.-+ -++++.+.+.|+.|...++..++..+++.=.+
T Consensus 169 ~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 244 (334)
T 2qq8_A 169 DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENL----PKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPL 244 (334)
T ss_dssp CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCH
T ss_pred CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHC----HHHHHHHHHcCCCccchHHHHHHHHhcccCCH
Confidence 4567888888775431 22232 223333444444333 35777888889999999999999999998899
Q ss_pred hHHHHhhhhcC
Q 047571 159 EDAEKVFDESS 169 (681)
Q Consensus 159 ~~a~~~~~~~~ 169 (681)
+.+.+++|.+.
T Consensus 245 ~~~lriWD~~l 255 (334)
T 2qq8_A 245 DLACRIWDVFC 255 (334)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999765
No 340
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.73 E-value=1.5e+02 Score=24.06 Aligned_cols=70 Identities=9% Similarity=0.046 Sum_probs=50.6
Q ss_pred hHHHHHHHH-HhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh--CCCCchhHHHHHHHHhhcCCChh
Q 047571 89 KEALVILDY-MDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRIN--GLENNGFLRTKLVKMYTSCGSFE 159 (681)
Q Consensus 89 ~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 159 (681)
+.+++-+.+ +.+.|.+.+. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 445554444 4566877655 4566778888888888999999999988 77777777766777777777543
No 341
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.49 E-value=2.2e+02 Score=28.49 Aligned_cols=63 Identities=8% Similarity=-0.170 Sum_probs=35.3
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHcCC-CCC---hhHHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 047571 515 VAMARMLSVSGQLKALKLGKEIHGQVLKKDF-ASV---PFVAAENIKMYGMCGFLECAKLVFDAVPV 577 (681)
Q Consensus 515 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 577 (681)
..++.+++.|...+.++.|..+..+..--.. .++ ...+-.+.+.+.-.+++.+|.+.+.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3566677777777777777777776542110 111 11122345556666777777666665443
No 342
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.23 E-value=2.4e+02 Score=22.61 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC
Q 047571 597 QEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA 649 (681)
Q Consensus 597 ~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 649 (681)
+++.++|..|..+|+-- -+..|......+...|++++|.++|+.-.+. +-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 44889999999988765 5667888888889999999999999987775 6666
No 343
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.11 E-value=1.4e+02 Score=23.74 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=34.3
Q ss_pred HHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 047571 403 WMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVL 464 (681)
Q Consensus 403 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (681)
.|.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 35556666554433 23344444455566777777776665555555555556666666543
No 344
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.06 E-value=93 Score=19.59 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=16.5
Q ss_pred HHHHhhcCC--HHHHHHHHHhccC
Q 047571 658 IDILTRFGR--IEEAHRFREMSSS 679 (681)
Q Consensus 658 ~~~~~~~g~--~~~A~~~~~~~~~ 679 (681)
..++.+.|. ++.|++++.+|..
T Consensus 27 e~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 27 GRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred HHHHHHhCcccHHHHHHHHHHhcC
Confidence 345666776 8889999888865
No 345
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.63 E-value=1.3e+02 Score=25.76 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhCCCCCCH--HHHHHH-----HHHHhccCCHHHHHHHHHHhhh
Q 047571 596 CQEALSLFDKMRNGGFTPNH--FTFKVL-----LSICNQAGFADEACRIFNVMSR 643 (681)
Q Consensus 596 ~~~a~~~~~~m~~~g~~p~~--~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~ 643 (681)
.+.|+.+|+.+.+.---|+. .....| +-.|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 67888888888775311211 122222 3357788888888888886653
No 346
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=26.62 E-value=2.4e+02 Score=24.89 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=33.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCC-------ChhhHHHHHHHHH--hcCChhHHHHHHHHH
Q 047571 77 KDIQRFARQNKLKEALVILDYMDQQGIPV-------NVTTFNALITACV--RTRSLVEGRLIHTHI 133 (681)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 133 (681)
..+...++.|+.+....+++.....+... +..-.+.|..++. +.|+.+-+..+++.-
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 44556677888888888888776655332 2233344444443 347776666666654
No 347
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=25.91 E-value=1.9e+02 Score=21.00 Aligned_cols=57 Identities=7% Similarity=0.119 Sum_probs=38.0
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH-----HcCCCCChhHHHHH
Q 047571 497 DALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVL-----KKDFASVPFVAAEN 555 (681)
Q Consensus 497 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l 555 (681)
.|.++.+++..-|+.|+..+...++..|..-+- + +.++.+++. ..|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 467778888888999999888888888876653 1 444333332 34666776655443
No 348
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.89 E-value=1.8e+02 Score=23.18 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=33.8
Q ss_pred HHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 047571 403 WMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVL 464 (681)
Q Consensus 403 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (681)
.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 35556665544332 33444444455666777777777666555665555556666666643
No 349
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=25.52 E-value=4.6e+02 Score=25.21 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=21.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571 654 YLIMIDILTRFGRIEEAHRFREMSSS 679 (681)
Q Consensus 654 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 679 (681)
+......++..|+++.|+++++.+|.
T Consensus 339 ~~eYA~lLA~qG~l~~A~~yL~~lp~ 364 (399)
T 2pm7_A 339 FLEFINLTTSTGNFELATEFLNSLPS 364 (399)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 44556678899999999999998874
No 350
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.43 E-value=2.9e+02 Score=23.59 Aligned_cols=143 Identities=10% Similarity=0.010 Sum_probs=63.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCCchhH--HHHHHHHhhcCCChhHHHHhhhhcCCCC---CccHHHHHHHHHHcCC
Q 047571 114 ITACVRTRSLVEGRLIHTHIRINGLENNGFL--RTKLVKMYTSCGSFEDAEKVFDESSSES---VYPWNALLRGAVIAGK 188 (681)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~ 188 (681)
+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+..+++.-...+ ....+.+. ..+..|
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~- 88 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH-LAAKKG- 88 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH-HHHHTT-
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH-HHHHcC-
Confidence 44455666654 4445555565443311 1223444556788877777776533222 22223332 233344
Q ss_pred cChhhHHHHHHHHHHcC-CCCChh--hHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcH--HHhHHHHHHHhcCChHH
Q 047571 189 KRYRGVLFNYMKMRELG-VQLNVY--TFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLI--LRTSLIDMYFKCGKIKL 263 (681)
Q Consensus 189 ~~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~~~~~~ 263 (681)
+.+ +++.+.+.| ..++.. .-.+.+...+..|+.+ +++.+.+.|..++.. .-.+.+...+..|+.+-
T Consensus 89 -~~~----~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 89 -HYE----VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp -CHH----HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred -CHH----HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHH
Confidence 333 333344444 222211 1112233334444443 444445555544321 11223344455666666
Q ss_pred HHHHHhcc
Q 047571 264 ARRVFDET 271 (681)
Q Consensus 264 a~~~~~~~ 271 (681)
+.-+++.-
T Consensus 160 ~~~Ll~~g 167 (237)
T 3b7b_A 160 AEILLAAK 167 (237)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHcC
Confidence 65555543
No 351
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.98 E-value=1.9e+02 Score=20.67 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=25.6
Q ss_pred cCChHHHHHHHhccCCCChhhHHHHHHHHHhcCCh
Q 047571 258 CGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLR 292 (681)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 292 (681)
....++|.++++.+..++..+|..++.++...+..
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 45667788888887777777777777777766653
No 352
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.84 E-value=69 Score=28.33 Aligned_cols=29 Identities=14% Similarity=-0.088 Sum_probs=21.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCc
Q 047571 113 LITACVRTRSLVEGRLIHTHIRINGLENN 141 (681)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 141 (681)
.+...+..|+.+.+..+++.+.+.|..++
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 35556677888888888888887776544
No 353
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.78 E-value=97 Score=24.25 Aligned_cols=60 Identities=7% Similarity=0.103 Sum_probs=32.9
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571 98 MDQQGIPVNVTTFNALITACVRTR-SLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF 158 (681)
Q Consensus 98 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (681)
|.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44555554433 233444555444 5566677777776666555665555556666665544
No 354
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.77 E-value=1.5e+02 Score=24.04 Aligned_cols=69 Identities=4% Similarity=0.080 Sum_probs=43.5
Q ss_pred HHHHHHHH-HHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCCh
Q 047571 395 EQALRSIA-WMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKN--QFLPNVSIITSLMIMYSKCGVL 464 (681)
Q Consensus 395 ~~A~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 464 (681)
+.+++-+. .+.+.|++++..= ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+.+.|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 33443333 3456677765543 34556666666777888888888777 6666666655566777777654
No 355
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.67 E-value=88 Score=27.08 Aligned_cols=62 Identities=10% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHc
Q 047571 531 KLGKEIHGQVLKKDFASV-PFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGY 592 (681)
Q Consensus 531 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 592 (681)
+....+|..|...|+... ...|......+...|++.+|.++|+.....+......|...+..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~ 193 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQ 193 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHH
No 356
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=24.61 E-value=3.5e+02 Score=23.62 Aligned_cols=17 Identities=0% Similarity=0.151 Sum_probs=8.0
Q ss_pred HHHhcCChHHHHHHHhc
Q 047571 254 MYFKCGKIKLARRVFDE 270 (681)
Q Consensus 254 ~~~~~~~~~~a~~~~~~ 270 (681)
..+..|+.+-+..+++.
T Consensus 140 ~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 140 LACENQQRACVKKLLES 156 (261)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHc
Confidence 33445555555444443
No 357
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.29 E-value=1.9e+02 Score=22.57 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=32.0
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 047571 76 YKDIQRFARQN-KLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLV 124 (681)
Q Consensus 76 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 124 (681)
..++..+...+ +.-.|.++++.+.+.+...+..|....|..+...|-+.
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34566666655 67778888888877766666777666666666666543
No 358
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.99 E-value=2e+02 Score=22.91 Aligned_cols=63 Identities=8% Similarity=0.124 Sum_probs=43.2
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChh
Q 047571 96 DYMDQQGIPVNVTTFNALITACVRTR-SLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFE 159 (681)
Q Consensus 96 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 159 (681)
+.|.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34566777655443 44566666665 67788999999888877777777766777777776543
No 359
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.36 E-value=1.4e+02 Score=21.74 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=28.9
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHH
Q 047571 361 RDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQAL 398 (681)
Q Consensus 361 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 398 (681)
...+.|.++++.+..++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 45788888888888888888888888887766655443
No 360
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.61 E-value=1.1e+02 Score=24.33 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=30.7
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571 98 MDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF 158 (681)
Q Consensus 98 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (681)
+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34455554433 233344444444 456666666666655555555555555555555543
No 361
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.00 E-value=1.9e+02 Score=25.58 Aligned_cols=18 Identities=6% Similarity=-0.101 Sum_probs=10.4
Q ss_pred HHhcCChHHHHHHHhhCC
Q 047571 458 YSKCGVLDYSLKLFDEME 475 (681)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~ 475 (681)
.+..|+.+-+..+++.-.
T Consensus 108 A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 108 AIERRNMTLVTLLVENGA 125 (273)
T ss_dssp HHHTTCHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHCCC
Confidence 345566666666666533
No 362
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.60 E-value=3.7e+02 Score=22.74 Aligned_cols=55 Identities=13% Similarity=0.004 Sum_probs=39.4
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccc-----hHHHHHHHHHHHHcCC
Q 047571 490 IENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKA-----LKLGKEIHGQVLKKDF 545 (681)
Q Consensus 490 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 545 (681)
.+..+++.|+-.+-+|.+.| .|....-..++-+....|. ...|...++.....|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 45789999999999999999 7777777777777777764 3344445555555554
No 363
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.19 E-value=1.2e+02 Score=22.08 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=26.6
Q ss_pred CChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHH
Q 047571 462 GVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDA 498 (681)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 498 (681)
.+.+.|.++++.+..++...|..++.++...|...-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4567788888888877777888888887665654433
No 364
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.18 E-value=1.2e+02 Score=21.75 Aligned_cols=21 Identities=19% Similarity=-0.073 Sum_probs=11.1
Q ss_pred HHHHHHHHhccCCHHHHHHHH
Q 047571 618 FKVLLSICNQAGFADEACRIF 638 (681)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~ 638 (681)
+.-....|.+.|++++|++..
T Consensus 18 ~~RrAe~ll~~gkydeAIech 38 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCH 38 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHH
Confidence 344455555555555555544
No 365
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.11 E-value=1.9e+02 Score=22.95 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 047571 76 YKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLV 124 (681)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 124 (681)
..++..+...+ .-.|.++++.+.+.+...+..|....|..+...|-+.
T Consensus 22 ~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 22 QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 44556666666 6778888888887776667777777777777766543
No 366
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=20.97 E-value=61 Score=29.25 Aligned_cols=26 Identities=8% Similarity=-0.114 Sum_probs=19.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhccCC
Q 047571 655 LIMIDILTRFGRIEEAHRFREMSSSL 680 (681)
Q Consensus 655 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 680 (681)
+.|++-+..+|+++.|+++++++|.-
T Consensus 38 n~l~R~FL~~gkl~AAr~l~~rlp~~ 63 (270)
T 3cqc_A 38 NAIMRKFLASKKHEAAKEVFVKIPQD 63 (270)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHCChH
Confidence 55666677788888888888887753
No 367
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.79 E-value=1.6e+02 Score=19.53 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 047571 74 AIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVR 119 (681)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 119 (681)
.++.++..+++..-.++++..+++..+.| ..+...|.--.+.+++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45677777777777888888888888777 4566666666666655
No 368
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.71 E-value=2.6e+02 Score=23.11 Aligned_cols=168 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHhccCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH--HHHHHHhhhhhhc
Q 047571 252 IDMYFKCGKIKLARRVFDETGDRDI-VVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLT--ILLPVIGEAWARK 328 (681)
Q Consensus 252 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~ 328 (681)
+...++.|+++....++..-..... ..-.+.+...+..|..+.-.++.+.+.+.|..++...-. +.+...+..+..+
T Consensus 10 l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~ 89 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGND 89 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTC
T ss_pred HHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcc
Q ss_pred cc--chhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhH-HHHHHHHHhCCChHHHHHHHHHHH
Q 047571 329 LG--QEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILW-TALMSGYVSNGRLEQALRSIAWMQ 405 (681)
Q Consensus 329 ~a--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~ 405 (681)
.. .++.+.+.+. |..++.. |..-. +.+..+.........-..+++.+.
T Consensus 90 ~~~~~~iv~~Ll~~-Gadin~~----------------------------d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll 140 (186)
T 3t8k_A 90 ITGTTELCKIFLEK-GADITAL----------------------------YKPYKIVVFKNIFNYFVDENEMIPLYKLIF 140 (186)
T ss_dssp HHHHHHHHHHHHHT-TCCSSSC----------------------------BGGGTBCTTGGGGGCCSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHC-CCCCCcc----------------------------CCCcCchHHHHHHHcCCChhhHHHHHHHHH
Q ss_pred H-cCcCCCHHHHH--HHHHHhhccCChhHHHHHHHHHHHhCCCCCh
Q 047571 406 Q-EGFRPDVVTVA--TVIPVCSQLKALNHGKEIHAYAVKNQFLPNV 448 (681)
Q Consensus 406 ~-~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 448 (681)
+ .|..++..... +-+....+.|..+.+.-+.+...+.+.+.+.
T Consensus 141 ~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~~~ 186 (186)
T 3t8k_A 141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186 (186)
T ss_dssp TSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC--
T ss_pred HhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcccCC
No 369
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=20.55 E-value=3.2e+02 Score=21.55 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=9.8
Q ss_pred HhhcCCChhHHHHhhhh
Q 047571 151 MYTSCGSFEDAEKVFDE 167 (681)
Q Consensus 151 ~~~~~g~~~~a~~~~~~ 167 (681)
..++.|+.+.+..+++.
T Consensus 14 ~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 14 EAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHTCHHHHHHHCCT
T ss_pred HHHHhCCHHHHHHHHHc
Confidence 34455666666666653
No 370
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.36 E-value=1.1e+02 Score=24.43 Aligned_cols=49 Identities=8% Similarity=0.079 Sum_probs=39.2
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 047571 76 YKDIQRFARQN-KLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLV 124 (681)
Q Consensus 76 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 124 (681)
..++..+...+ ++-.|.++++.+.+.+...+..|....|..+...|-+.
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 45677777776 78889999999998887778888888888888877544
No 371
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.27 E-value=1.6e+02 Score=22.71 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571 111 NALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF 158 (681)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (681)
..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 455666766777888999999999888777777777777888877754
No 372
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.13 E-value=5.2e+02 Score=23.86 Aligned_cols=106 Identities=8% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhc----CCChhHHHHhhhh-
Q 047571 93 VILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTS----CGSFEDAEKVFDE- 167 (681)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~- 167 (681)
++++.+.+.|+.|...++..++..+.+.=.++.+..+++.+...|...-..+.-+++..+.. ..+.++..+.++.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q ss_pred cCCCCCccHHHHHHHHHHcCCcChhhHHHHHHH
Q 047571 168 SSSESVYPWNALLRGAVIAGKKRYRGVLFNYMK 200 (681)
Q Consensus 168 ~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 200 (681)
++..+......++.-..... ...+....-.+
T Consensus 289 ~p~~~~~di~~li~~A~~l~--~s~~l~~~e~e 319 (331)
T 3qye_A 289 LPNLGLVQMEKTINQVFEMD--IAKQLQAYEVE 319 (331)
T ss_dssp TTCCCHHHHHHHHHHHHHCC--CHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCC--chHHHHHHHHH
No 373
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.05 E-value=4.1e+02 Score=22.67 Aligned_cols=70 Identities=23% Similarity=0.228 Sum_probs=41.1
Q ss_pred CCCchhHHHHHHHHH---hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-----hhHHHHHHHHHHHhCC
Q 047571 69 EKNPRAIYKDIQRFA---RQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRS-----LVEGRLIHTHIRINGL 138 (681)
Q Consensus 69 ~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 138 (681)
..+-+.+..+|+++. |..+++.|+..+.+|++.|-.|....-..++-+.-.-|. ...|...++.....|.
T Consensus 29 Dk~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 29 DKNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred CCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334444555555554 578999999999999999866655444444444433332 3345556666666663
Done!