BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047572
(595 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B0H|A Chain A, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
pdb|3B0H|B Chain B, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
Length = 588
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/544 (84%), Positives = 501/544 (92%), Gaps = 2/544 (0%)
Query: 53 AERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQA 112
+ERLEPRVEE+DGY+VLKEKFR+GINP EK KIEKEPMKLFMENGIEDLAK+S+EEI+ +
Sbjct: 46 SERLEPRVEEKDGYWVLKEKFRQGINPAEKAKIEKEPMKLFMENGIEDLAKISLEEIEGS 105
Query: 113 KNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCAD 172
K TKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTS QTRYLASVI+KYGKDGCAD
Sbjct: 106 KLTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSSQTRYLASVIRKYGKDGCAD 165
Query: 173 VTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP 232
VTTRQNWQIRGVVLPDVPEILKGL +VGLTSLQSGMDNVRNPVGNPLAGIDP EIVDTRP
Sbjct: 166 VTTRQNWQIRGVVLPDVPEILKGLDEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRP 225
Query: 233 YTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNL 292
YTNLLS ++TAN +GNP VTNLPRKWNVCV+GSHDLYEHP INDLAYMPATKDGRFGFNL
Sbjct: 226 YTNLLSQYVTANFRGNPAVTNLPRKWNVCVIGSHDLYEHPQINDLAYMPATKDGRFGFNL 285
Query: 293 LVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGI 352
LVGGFFSPKRCAEA+PLDAWV ADDV+PVCKA+LEAYRDLG RGNRQKTRMMWL+DELG+
Sbjct: 286 LVGGFFSPKRCAEAVPLDAWVPADDVVPVCKAILEAYRDLGTRGNRQKTRMMWLVDELGV 345
Query: 353 EGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQAD 412
EGFRAEVVKRMP Q+LDR S+EDLVQ+QW+RR+YLGV+PQKQEG+S+VGLHIPVGRVQAD
Sbjct: 346 EGFRAEVVKRMPQQKLDRESTEDLVQKQWERREYLGVHPQKQEGYSFVGLHIPVGRVQAD 405
Query: 413 DMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXX-XXXXXFSPQPSILMKGLV 471
DMDELARLAD YGSGELRLTVEQNIIIPNV NS FS P ILMK LV
Sbjct: 406 DMDELARLADEYGSGELRLTVEQNIIIPNVKNSKIEALLNEPLLKNRFSTDPPILMKNLV 465
Query: 472 ACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGC 531
ACTGNQFCG+AIIETKAR++K+T+EV+ LV +T+PVRMHWTGCPNSCAQVQVADIGFMGC
Sbjct: 466 ACTGNQFCGKAIIETKARSMKITEEVQLLVSITQPVRMHWTGCPNSCAQVQVADIGFMGC 525
Query: 532 MTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLRERE 591
+TR E GKT EGADV+LGGRIGSDSHLGD+YKK VPC+DLVP++ D+LV++FGAV RERE
Sbjct: 526 LTRKE-GKTVEGADVYLGGRIGSDSHLGDVYKKSVPCEDLVPIIVDLLVDNFGAVPRERE 584
Query: 592 EAED 595
EAED
Sbjct: 585 EAED 588
>pdb|2AKJ|A Chain A, Structure Of Spinach Nitrite Reductase
Length = 608
Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/544 (82%), Positives = 498/544 (91%), Gaps = 1/544 (0%)
Query: 52 DAERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQ 111
DA RLEPRVEERDG++VLKE+FR GINP EKVKIEK+PMKLF+E+GI DLA LSMEE+D+
Sbjct: 65 DAARLEPRVEERDGFWVLKEEFRSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDK 124
Query: 112 AKNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCA 171
+K+ KDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCA
Sbjct: 125 SKHNKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCA 184
Query: 172 DVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTR 231
DVTTRQNWQIRGVVLPDVPEI+KGL VGLTSLQSGMDNVRNPVGNPLAGIDP EIVDTR
Sbjct: 185 DVTTRQNWQIRGVVLPDVPEIIKGLESVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTR 244
Query: 232 PYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFN 291
P+TNL+S F+TAN++GN ++TNLPRKWN CV+GSHDLYEHPHINDLAYMPATK+G+FGFN
Sbjct: 245 PFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDLYEHPHINDLAYMPATKNGKFGFN 304
Query: 292 LLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELG 351
LLVGGFFS KRC EAIPLDAWV+A+DV+PVCKA+LEA+RDLGFRGNRQK RMMWLIDELG
Sbjct: 305 LLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELG 364
Query: 352 IEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQA 411
+E FR EV KRMP Q L+R SSE+LVQ+ W+RR+YLGV+PQKQ+G S+VGLHIPVGR+QA
Sbjct: 365 MEAFRGEVEKRMPEQVLERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRLQA 424
Query: 412 DDMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXX-XXXXXFSPQPSILMKGL 470
D+M+ELAR+AD YGSGELRLTVEQNIIIPNV+NS +SP+P ILMKGL
Sbjct: 425 DEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLNEPLLKERYSPEPPILMKGL 484
Query: 471 VACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMG 530
VACTG+QFCGQAIIETKARALKVT+EV+RLV VT+PVRMHWTGCPNSC QVQVADIGFMG
Sbjct: 485 VACTGSQFCGQAIIETKARALKVTEEVQRLVSVTRPVRMHWTGCPNSCGQVQVADIGFMG 544
Query: 531 CMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLRER 590
CMTRDE+GK CEGADVF+GGRIGSDSHLGDIYKK VPCKDLVP+VA+IL+ FGAV RER
Sbjct: 545 CMTRDENGKPCEGADVFVGGRIGSDSHLGDIYKKAVPCKDLVPVVAEILINQFGAVPRER 604
Query: 591 EEAE 594
EEAE
Sbjct: 605 EEAE 608
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 949 bits (2453), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/543 (83%), Positives = 501/543 (92%)
Query: 53 AERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQA 112
AERLEPRVEE+DGY++LKE+FRKGINPQEKVKIEKEPMKLFMENGIE+LAK+ +EEIDQ+
Sbjct: 49 AERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQS 108
Query: 113 KNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCAD 172
K TKDDIDVRLKWLGLFHRRK+ YGRFMMRLKLPNGVTTS QTRYLASVI+KYGK+GCAD
Sbjct: 109 KLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCAD 168
Query: 173 VTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP 232
+TTRQNWQIRGVVLPDVPEILKGLA+VGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP
Sbjct: 169 ITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP 228
Query: 233 YTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNL 292
YTNLLS FIT N++GNP V+NLPRKWN CVVGSHDLYEHPHINDLAYMPATKDGRFGFNL
Sbjct: 229 YTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNL 288
Query: 293 LVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGI 352
LVGGFFS KRC EAIPLDAWV ADDV+PVC+A+LEA+RDLGFRGNRQK RMMWLIDELG+
Sbjct: 289 LVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGV 348
Query: 353 EGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQAD 412
EGFRAEV KRMP Q+L+R S EDLVQ+QW+RRDYLGV+PQKQEG+S++GLHIPVGRVQAD
Sbjct: 349 EGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQAD 408
Query: 413 DMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPQPSILMKGLVA 472
DMDELARLAD YGSGE+RLTVEQNIIIPN++ S FSP P ILMKGLVA
Sbjct: 409 DMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVA 468
Query: 473 CTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCM 532
CTGNQFCGQAIIETKAR+LK+T+EV+R V +TKPVRMHWTGCPN+CAQVQVADIGFMGC+
Sbjct: 469 CTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCL 528
Query: 533 TRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLREREE 592
TRD++GKT EGADVFLGGRIGSDSHLG++YKK VPC DLVPLV D+LV +FGAV REREE
Sbjct: 529 TRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPREREE 588
Query: 593 AED 595
ED
Sbjct: 589 TED 591
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/536 (83%), Positives = 495/536 (92%)
Query: 53 AERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQA 112
AERLEPRVEE+DGY++LKE+FRKGINPQEKVKIEKEPMKLFMENGIE+LAK+ +EEIDQ+
Sbjct: 49 AERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQS 108
Query: 113 KNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCAD 172
K TKDDIDVRLKWLGLFHRRK+ YGRFMMRLKLPNGVTTS QTRYLASVI+KYGK+GCAD
Sbjct: 109 KLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCAD 168
Query: 173 VTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP 232
+TTRQNWQIRGVVLPDVPEILKGLA+VGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP
Sbjct: 169 ITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP 228
Query: 233 YTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNL 292
YTNLLS FIT N++GNP V+NLPRKWN CVVGSHDLYEHPHINDLAYMPATKDGRFGFNL
Sbjct: 229 YTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNL 288
Query: 293 LVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGI 352
LVGGFFS KRC EAIPLDAWV ADDV+PVC+A+LEA+RDLGFRGNRQK RMMWLIDELG+
Sbjct: 289 LVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGV 348
Query: 353 EGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQAD 412
EGFRAEV KRMP Q+L+R S EDLVQ+QW+RRDYLGV+PQKQEG+S++GLHIPVGRVQAD
Sbjct: 349 EGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQAD 408
Query: 413 DMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPQPSILMKGLVA 472
DMDELARLAD YGSGE+RLTVEQNIIIPN++ S FSP P ILMKGLVA
Sbjct: 409 DMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVA 468
Query: 473 CTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCM 532
CTGNQFCG+AIIETKAR+LK+T+EV+R V +TKPVRMHWTGCPN+CAQVQVADIGFMGC+
Sbjct: 469 CTGNQFCGKAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCL 528
Query: 533 TRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLR 588
TRD++GKT EGADVFLGGRIGSDSHLG++YKK VPC DLVPLV D+LV +FGAV R
Sbjct: 529 TRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR 584
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/536 (83%), Positives = 494/536 (92%)
Query: 53 AERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQA 112
AERLEPRVEE+DGY++LKE+FRKGINPQEKVKIEKEPMKLFMENGIE+LAK+ +EEIDQ+
Sbjct: 49 AERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQS 108
Query: 113 KNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCAD 172
K TKDDIDVRLKWLGLFHRRK+ YGRFMMRLKLPNGVTTS QTRYLASVI+KYGK+GCAD
Sbjct: 109 KLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCAD 168
Query: 173 VTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP 232
+TTRQNWQIRGVVLPDVPEILKGLA+VGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP
Sbjct: 169 ITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP 228
Query: 233 YTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNL 292
YTNLLS FIT N++GNP V+NLPRKW CVVGSHDLYEHPHINDLAYMPATKDGRFGFNL
Sbjct: 229 YTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNL 288
Query: 293 LVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGI 352
LVGGFFS KRC EAIPLDAWV ADDV+PVC+A+LEA+RDLGFRGNRQK RMMWLIDELG+
Sbjct: 289 LVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGV 348
Query: 353 EGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQAD 412
EGFRAEV KRMP Q+L+R S EDLVQ+QW+RRDYLGV+PQKQEG+S++GLHIPVGRVQAD
Sbjct: 349 EGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQAD 408
Query: 413 DMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPQPSILMKGLVA 472
DMDELARLAD YGSGE+RLTVEQNIIIPN++ S FSP P ILMKGLVA
Sbjct: 409 DMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVA 468
Query: 473 CTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCM 532
CTGNQFCGQAIIETKAR+LK+T+EV+R V +TKPVRMHWTGCPN+CAQVQVADIGFMGC+
Sbjct: 469 CTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCL 528
Query: 533 TRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLR 588
TRD++GKT EGADVFLGGRIGSDSHLG++YKK VPC DLVPLV D+LV +FGAV R
Sbjct: 529 TRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR 584
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/536 (83%), Positives = 494/536 (92%)
Query: 53 AERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQA 112
AERLEPRVEE+DGY++LKE+FRKGINPQEKVKIEKEPMKLFMENGIE+LAK+ +EEIDQ+
Sbjct: 49 AERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQS 108
Query: 113 KNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCAD 172
K TKDDIDVRLKWLGLFHRRK+ YGRFMMRLKLPNGVTTS QTRYLASVI+KYGK+GCAD
Sbjct: 109 KLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCAD 168
Query: 173 VTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP 232
+TTRQNWQIRGVVLPDVPEILKGLA+VGLTSLQSG DNVRNPVGNPLAGIDPEEIVDTRP
Sbjct: 169 ITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGEDNVRNPVGNPLAGIDPEEIVDTRP 228
Query: 233 YTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNL 292
YTNLLS FIT N++GNP V+NLPRKWN CVVGSHDLYEHPHINDLAYMPATKDGRFGFNL
Sbjct: 229 YTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNL 288
Query: 293 LVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGI 352
LVGGFFS KRC EAIPLDAWV ADDV+PVC+A+LEA+RDLGFRGNRQK RMMWLIDELG+
Sbjct: 289 LVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGV 348
Query: 353 EGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQAD 412
EGFRAEV KRMP Q+L+R S EDLVQ+QW+RRDYLGV+PQKQEG+S++GLHIPVGRVQAD
Sbjct: 349 EGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQAD 408
Query: 413 DMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPQPSILMKGLVA 472
DMDELARLAD YGSGE+RLTVEQNIIIPN++ S FSP P ILMKGLVA
Sbjct: 409 DMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVA 468
Query: 473 CTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCM 532
CTGNQFCGQAIIETKAR+LK+T+EV+R V +TKPVRMHWTGCPN+CAQVQVADIGFMGC+
Sbjct: 469 CTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCL 528
Query: 533 TRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLR 588
TRD++GKT EGADVFLGGRIGSDSHLG++YKK VPC DLVPLV D+LV +FGAV R
Sbjct: 529 TRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR 584
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/536 (83%), Positives = 494/536 (92%)
Query: 53 AERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQA 112
AERLEPRVEE+DGY++LKE+FRKGINPQEKVKIEKEPMKLFMENGIE+LAK+ +EEIDQ+
Sbjct: 49 AERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQS 108
Query: 113 KNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCAD 172
K TKDDIDVRLKWLGLFHRRK+ YGRFMMRLKLPNGVTTS QTRYLASVI+KYGK+GCAD
Sbjct: 109 KLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCAD 168
Query: 173 VTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP 232
+TTRQNWQIRGVVLPDVPEILKGLA+VGLTSLQSG DNVRNPVGNPLAGIDPEEIVDTRP
Sbjct: 169 ITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGKDNVRNPVGNPLAGIDPEEIVDTRP 228
Query: 233 YTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNL 292
YTNLLS FIT N++GNP V+NLPRKWN CVVGSHDLYEHPHINDLAYMPATKDGRFGFNL
Sbjct: 229 YTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNL 288
Query: 293 LVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGI 352
LVGGFFS KRC EAIPLDAWV ADDV+PVC+A+LEA+RDLGFRGNRQK RMMWLIDELG+
Sbjct: 289 LVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGV 348
Query: 353 EGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQAD 412
EGFRAEV KRMP Q+L+R S EDLVQ+QW+RRDYLGV+PQKQEG+S++GLHIPVGRVQAD
Sbjct: 349 EGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQAD 408
Query: 413 DMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPQPSILMKGLVA 472
DMDELARLAD YGSGE+RLTVEQNIIIPN++ S FSP P ILMKGLVA
Sbjct: 409 DMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVA 468
Query: 473 CTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCM 532
CTGNQFCGQAIIETKAR+LK+T+EV+R V +TKPVRMHWTGCPN+CAQVQVADIGFMGC+
Sbjct: 469 CTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCL 528
Query: 533 TRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLR 588
TRD++GKT EGADVFLGGRIGSDSHLG++YKK VPC DLVPLV D+LV +FGAV R
Sbjct: 529 TRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR 584
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 934 bits (2413), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/536 (83%), Positives = 494/536 (92%)
Query: 53 AERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQA 112
AERLEPRVEE+DGY++LKE+FRKGINPQEKVKIEKEPMKLFMENGIE+LAK+ +EEIDQ+
Sbjct: 49 AERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQS 108
Query: 113 KNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCAD 172
K TKDDIDVRLKWLGLFHRRK+ YGRFMMRLKLPNGVTTS QTRYLASVI+KYGK+GCAD
Sbjct: 109 KLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCAD 168
Query: 173 VTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP 232
+TTRQNWQIRGVVLPDVPEILKGLA+VGLTSLQSG DNVRNPVGNPLAGIDPEEIVDTRP
Sbjct: 169 ITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGGDNVRNPVGNPLAGIDPEEIVDTRP 228
Query: 233 YTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNL 292
YTNLLS FIT N++GNP V+NLPRKWN CVVGSHDLYEHPHINDLAYMPATKDGRFGFNL
Sbjct: 229 YTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNL 288
Query: 293 LVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGI 352
LVGGFFS KRC EAIPLDAWV ADDV+PVC+A+LEA+RDLGFRGNRQK RMMWLIDELG+
Sbjct: 289 LVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGV 348
Query: 353 EGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQAD 412
EGFRAEV KRMP Q+L+R S EDLVQ+QW+RRDYLGV+PQKQEG+S++GLHIPVGRVQAD
Sbjct: 349 EGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQAD 408
Query: 413 DMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPQPSILMKGLVA 472
DMDELARLAD YGSGE+RLTVEQNIIIPN++ S FSP P ILMKGLVA
Sbjct: 409 DMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVA 468
Query: 473 CTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCM 532
CTGNQFCGQAIIETKAR+LK+T+EV+R V +TKPVRMHWTGCPN+CAQVQVADIGFMGC+
Sbjct: 469 CTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCL 528
Query: 533 TRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLR 588
TRD++GKT EGADVFLGGRIGSDSHLG++YKK VPC DLVPLV D+LV +FGAV R
Sbjct: 529 TRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR 584
>pdb|1ZJ8|A Chain A, Structure Of Mycobacterium Tuberculosis Nira Protein
pdb|1ZJ8|B Chain B, Structure Of Mycobacterium Tuberculosis Nira Protein
pdb|1ZJ9|A Chain A, Structure Of Mycobacterium Tuberculosis Nira Protein
pdb|1ZJ9|B Chain B, Structure Of Mycobacterium Tuberculosis Nira Protein
Length = 566
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 163/544 (29%), Positives = 262/544 (48%), Gaps = 46/544 (8%)
Query: 74 RKGINPQEKVKIEKEPMKLFMENGIEDL-AKLSMEEIDQAKNTKDDIDVRLKWLGLFHRR 132
R+ +N E++K P+ + IE++ AK + ID K D+ R +W GL+ +R
Sbjct: 31 REPLNANEELKKAGNPLDV--RERIENIYAKQGFDSID-----KTDLRGRFRWWGLYTQR 83
Query: 133 KHHYG---------------RFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQ 177
+ Y FMMR++ G ++ R L + ++ +D AD++ RQ
Sbjct: 84 EQGYDGTWTGDDNIDKLEAKYFMMRVRCDGGALSAAALRTLGQISTEFARD-TADISDRQ 142
Query: 178 NWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVD-TRPYTNL 236
N Q + + +VPEI + L VGL + ++ D R +G+PLAG +E++D T +
Sbjct: 143 NVQYHWIEVENVPEIWRRLDDVGLQTTEACGDCPRVVLGSPLAGESLDEVLDPTWAIEEI 202
Query: 237 LSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATK-DGRFGFNLLVG 295
+ +I G P +LPRK+ + G D+ IND+A++ + G +L VG
Sbjct: 203 VRRYI-----GKPDFADLPRKYKTAISGLQDVAHE--INDVAFIGVNHPEHGPGLDLWVG 255
Query: 296 GFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGF 355
G S A + AWV +V V AV +RD G+R R K R+ +LI + GI F
Sbjct: 256 GGLSTNPML-AQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLRAKARLKFLIKDWGIAKF 314
Query: 356 RAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMD 415
R + + L G + + V+ D++GV K G + VG+ GRV +
Sbjct: 315 REVLETEYLKRPLIDGPAPEPVKHP---IDHVGVQRLKN-GLNAVGVAPIAGRVSGTILT 370
Query: 416 ELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPQPSILMKGLVACTG 475
+A L GS +R T Q ++I ++ ++ +PS + L+AC+G
Sbjct: 371 AVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQSRPSHWRRNLMACSG 430
Query: 476 NQFCGQAIIETKARALKVTKEVER-LVDVTK----PVRMHWTGCPNSCAQVQVADIGFMG 530
+FC + ET+ RA + E+ER L D+ P+ ++ GCPNSCA++Q+ADIGF G
Sbjct: 431 IEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNSCARIQIADIGFKG 490
Query: 531 CMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLRER 590
M D G + EG V LGG +G D+ G ++ D + D +V +F ++ R
Sbjct: 491 QMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYIDRVVRNF---VKHR 547
Query: 591 EEAE 594
E E
Sbjct: 548 SEGE 551
>pdb|4G38|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein
Reveals The Mechanism For Coordinated Electron And
Proton Transfer
Length = 570
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/492 (24%), Positives = 202/492 (41%), Gaps = 61/492 (12%)
Query: 139 FMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQ 198
++R +LP GV T++Q + + + G +T RQ +Q G++ +V + + L
Sbjct: 80 MLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHS 139
Query: 199 VGLTSLQSGMDNVRNPV--GNPLAG------------IDPEEIVDTRPYTNL-LSHFITA 243
VGL +L + D RN + NP I + TR Y + L A
Sbjct: 140 VGLDALATAWDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVA 199
Query: 244 NAQGNPTV--TNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRF-GFNLLVGGFFS- 299
P + T LPRK+ VV H ND+ ++ ++G+ GFNLLVGG S
Sbjct: 200 TTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSI 259
Query: 300 ----PKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGF 355
K A ++ + + V +AV+ RD G R +R+ + + ++ +G+E F
Sbjct: 260 EHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETF 319
Query: 356 RAEVVKRM--------PGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVG 407
+AEV +R P + RG V + D +L ++ + Y + G
Sbjct: 320 KAEVERRAGIKFEPIRPYEFTGRGDRIGWV-KGIDDNWHLTLFIENGRILDYPARPLKTG 378
Query: 408 RVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPQPSILM 467
+ E+A++ G+ R+T QN+II V S +
Sbjct: 379 LL------EIAKIH----KGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQR 428
Query: 468 KGLVACTGNQFCGQAIIETKARALKVTKEVERLVD----VTKPVRMHWTGCPNSCAQVQV 523
+ +AC C A+ E + ++ L+ + + M TGCPN C + +
Sbjct: 429 ENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAML 488
Query: 524 ADIGFMGCMTRDEDGKTCEGADVFLGG-RIGSDSHLGDIYKKGVPCKDLVPLVADILVEH 582
A++G + GK ++ LGG RIG + + +YK+ + P + L E
Sbjct: 489 AEVGLV--------GKAPGRYNLHLGGNRIG--TRIPRMYKENI----TEPEILASLDEL 534
Query: 583 FGAVLREREEAE 594
G +ERE E
Sbjct: 535 IGRWAKEREAGE 546
>pdb|4HTR|A Chain A, N149w Variant Of Sirhp Bound To Sulfite
Length = 507
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 120/492 (24%), Positives = 202/492 (41%), Gaps = 61/492 (12%)
Query: 139 FMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQ 198
++R +LP GV T++Q + + + G +T RQ +Q G++ +V + + L
Sbjct: 17 MLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHS 76
Query: 199 VGLTSLQSGMDNVRNPV--GNPLAG------------IDPEEIVDTRPYTNL-LSHFITA 243
VGL +L + D RN + NP I + TR Y + L A
Sbjct: 77 VGLDALATAWDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVA 136
Query: 244 NAQGNPTV--TNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRF-GFNLLVGGFFS- 299
P + T LPRK+ VV H ND+ ++ ++G+ GFNLLVGG S
Sbjct: 137 TTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSI 196
Query: 300 ----PKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGF 355
K A ++ + + V +AV+ RD G R +R+ + + ++ +G+E F
Sbjct: 197 EHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETF 256
Query: 356 RAEVVKRM--------PGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVG 407
+AEV +R P + RG V + D +L ++ + Y + G
Sbjct: 257 KAEVERRAGIKFEPIRPYEFTGRGDRIGWV-KGIDDNWHLTLFIENGRILDYPARPLKTG 315
Query: 408 RVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPQPSILM 467
+ E+A++ G+ R+T QN+II V S +
Sbjct: 316 ------LLEIAKIH----KGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQR 365
Query: 468 KGLVACTGNQFCGQAIIETKARALKVTKEVERLVD----VTKPVRMHWTGCPNSCAQVQV 523
+ +AC C A+ E + ++ L+ + + M TGCPN C + +
Sbjct: 366 ENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAML 425
Query: 524 ADIGFMGCMTRDEDGKTCEGADVFLGG-RIGSDSHLGDIYKKGVPCKDLVPLVADILVEH 582
A++G + GK ++ LGG RIG + + +YK+ + P + L E
Sbjct: 426 AEVGLV--------GKAPGRYNLHLGGNRIG--TRIPRMYKENI----TEPEILASLDEL 471
Query: 583 FGAVLREREEAE 594
G +ERE E
Sbjct: 472 IGRWAKEREAGE 483
>pdb|1AOP|A Chain A, Sulfite Reductase Structure At 1.6 Angstrom Resolution
pdb|2AOP|A Chain A, Sulfite Reductase: Reduced With Crii Edta, Siroheme Feii,
[4fe-4s] +1, Phosphate Bound
pdb|2GEP|A Chain A, Sulfite Reductase Hemoprotein, Oxidized, Siroheme Feiii
[4fe-4s] +2, Sulfite Complex
pdb|3AOP|A Chain A, Sulfite Reductase Hemoprotein Photoreduced With Proflavine
Edta, Siroheme Feii,[4fe-4s] +1, Phosphate Bound
pdb|3GEO|A Chain A, Sulfite Reductase Hemoprotein Nitrite Complex
pdb|4AOP|A Chain A, Sulfite Reductase Hemoprotein Partially Photoreduced With
Proflavine Edta, Phosphate Partially Bound
pdb|4GEP|A Chain A, Sulfite Reductase Hemoprotein Cyanide Complex Reduced With
Crii Edta
pdb|5AOP|A Chain A, Sulfite Reductase Structure Reduced With Crii Edta,
5-Coordinate Siroheme, Siroheme Feii, [4fe-4s] +1
pdb|5GEP|A Chain A, Sulfite Reductase Hemoprotein Carbon Monoxide Complex
Reduced With Crii Edta
pdb|6GEP|A Chain A, Sulfite Reductase Hemoprotein Nitric Oxide Complex Reduced
With Proflavine Edta
pdb|7GEP|A Chain A, Sulfite Reductase Hemoprotein In Complex With A Partially
Oxidized Sulfide Species
pdb|8GEP|A Chain A, Sulfite Reductase Hemoprotein Nitrate Complex
Length = 497
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 120/492 (24%), Positives = 202/492 (41%), Gaps = 61/492 (12%)
Query: 139 FMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQ 198
++R +LP GV T++Q + + + G +T RQ +Q G++ +V + + L
Sbjct: 7 MLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHS 66
Query: 199 VGLTSLQSGMDNVRNPV--GNPLAG------------IDPEEIVDTRPYTNL-LSHFITA 243
VGL +L + D RN + NP I + TR Y + L A
Sbjct: 67 VGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVA 126
Query: 244 NAQGNPTV--TNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRF-GFNLLVGGFFS- 299
P + T LPRK+ VV H ND+ ++ ++G+ GFNLLVGG S
Sbjct: 127 TTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSI 186
Query: 300 ----PKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGF 355
K A ++ + + V +AV+ RD G R +R+ + + ++ +G+E F
Sbjct: 187 EHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETF 246
Query: 356 RAEVVKRM--------PGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVG 407
+AEV +R P + RG V + D +L ++ + Y + G
Sbjct: 247 KAEVERRAGIKFEPIRPYEFTGRGDRIGWV-KGIDDNWHLTLFIENGRILDYPARPLKTG 305
Query: 408 RVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPQPSILM 467
+ E+A++ G+ R+T QN+II V S +
Sbjct: 306 ------LLEIAKIH----KGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQR 355
Query: 468 KGLVACTGNQFCGQAIIETKARALKVTKEVERLVD----VTKPVRMHWTGCPNSCAQVQV 523
+ +AC C A+ E + ++ L+ + + M TGCPN C + +
Sbjct: 356 ENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAML 415
Query: 524 ADIGFMGCMTRDEDGKTCEGADVFLGG-RIGSDSHLGDIYKKGVPCKDLVPLVADILVEH 582
A++G + GK ++ LGG RIG + + +YK+ + P + L E
Sbjct: 416 AEVGLV--------GKAPGRYNLHLGGNRIG--TRIPRMYKENI----TEPEILASLDEL 461
Query: 583 FGAVLREREEAE 594
G +ERE E
Sbjct: 462 IGRWAKEREAGE 473
>pdb|4G39|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein
Reveals The Mechanism For Coordinated Electron And
Proton Transfer
Length = 570
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 121/492 (24%), Positives = 203/492 (41%), Gaps = 61/492 (12%)
Query: 139 FMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQ 198
++R +LP GV T++Q + + + G +T RQ +Q G++ +V + + L
Sbjct: 80 MLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHS 139
Query: 199 VGLTSLQSGMD---NV---RNPVGNPLAG--------IDPEEIVDTRPYTNL-LSHFITA 243
VGL +L + D NV NP + L I + TR Y + L A
Sbjct: 140 VGLDALATANDMNSNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVA 199
Query: 244 NAQGNPTV--TNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRF-GFNLLVGGFFS- 299
P + T LPRK+ VV H ND+ ++ ++G+ GFNLLVGG S
Sbjct: 200 TTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSI 259
Query: 300 ----PKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGF 355
K A ++ + + V +AV+ RD G R +R+ + + ++ +G+E F
Sbjct: 260 EHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETF 319
Query: 356 RAEVVKRM--------PGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVG 407
+AEV +R P + RG V + D +L ++ + Y + G
Sbjct: 320 KAEVERRAGIKFEPIRPYEFTGRGDRIGWV-KGIDDNWHLTLFIENGRILDYPARPLKTG 378
Query: 408 RVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPQPSILM 467
+ E+A++ G+ R+T QN+II V S +
Sbjct: 379 LL------EIAKIH----KGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQR 428
Query: 468 KGLVACTGNQFCGQAIIETKARALKVTKEVERLVD----VTKPVRMHWTGCPNSCAQVQV 523
+ +AC C A+ E + ++ L+ + + M TGCPN C + +
Sbjct: 429 ENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAML 488
Query: 524 ADIGFMGCMTRDEDGKTCEGADVFLGG-RIGSDSHLGDIYKKGVPCKDLVPLVADILVEH 582
A++G + GK ++ LGG RIG + + +YK+ + P + L E
Sbjct: 489 AEVGLV--------GKAPGRYNLHLGGNRIG--TRIPRMYKENI----TEPEILASLDEL 534
Query: 583 FGAVLREREEAE 594
G +ERE E
Sbjct: 535 IGRWAKEREAGE 546
>pdb|2V4J|B Chain B, The Crystal Structure Of Desulfovibrio Vulgaris
Dissimilatory Sulfite Reductase Bound To Dsrc Provides
Novel Insights Into The Mechanism Of Sulfate Respiration
pdb|2V4J|E Chain E, The Crystal Structure Of Desulfovibrio Vulgaris
Dissimilatory Sulfite Reductase Bound To Dsrc Provides
Novel Insights Into The Mechanism Of Sulfate Respiration
Length = 381
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 11/126 (8%)
Query: 416 ELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXF-SPQPSILMKGLVACT 474
E+ +AD Y G LR T N+ D + F + G A
Sbjct: 80 EMCDIADKYCGGHLRFTTRNNVEFMVADEASLKALKEDLASRKFDGGSLKFPIGGTGAGV 139
Query: 475 GNQFCGQAIIETKARALKVTKEVERLVD----------VTKPVRMHWTGCPNSCAQVQVA 524
N Q + A + V+ ++D + PVR+ C N C V +
Sbjct: 140 SNIVHTQGWVHCHTPATDASGPVKAIMDEVFEDFQSMRLPAPVRISLACCINMCGAVHCS 199
Query: 525 DIGFMG 530
DIG +G
Sbjct: 200 DIGVVG 205
>pdb|3EFM|A Chain A, Structure Of The Alcaligin Outer Membrane Recepteur Faua
From Bordetella Pertussis
Length = 707
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 188 DVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNL---LSHFITAN 244
++ +++ G + G ++Q+ R G + GID E P N+ +HF T +
Sbjct: 537 NLAQVIPGSSIPGFPNMQAS----RAASGAKVEGIDLEASGQILPDWNIGASYTHFTTKD 592
Query: 245 AQGNPTVTNLPRK 257
A GNP TN PR
Sbjct: 593 ASGNPINTNHPRS 605
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 529 MGCMTRDEDGKTCEGADVFLGGRIGSDSHLG-----DIYKKGVPCKDLVPLVADILVEHF 583
MGC T E K G + + G GSD+ LG ++Y++G CKD D ++E
Sbjct: 2 MGCETTIEISKGRTGLGLSIVG--GSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVN 59
Query: 584 GAVLREREEAE 594
G LR+ E
Sbjct: 60 GIDLRKATHDE 70
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 20/87 (22%)
Query: 345 WLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHI 404
W+I+ + +GFR + VK + + +D+ S VQ +R +
Sbjct: 337 WIINNIDFDGFRLDAVKHIDYRFIDKWMS--AVQNSSNRDVFF----------------- 377
Query: 405 PVGRVQADDMDELARLADAYGSGELRL 431
VG +D+D+L D G+ +LR+
Sbjct: 378 -VGEAWVEDVDDLKGFLDTVGNPDLRV 403
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,219,617
Number of Sequences: 62578
Number of extensions: 751672
Number of successful extensions: 1702
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1667
Number of HSP's gapped (non-prelim): 17
length of query: 595
length of database: 14,973,337
effective HSP length: 104
effective length of query: 491
effective length of database: 8,465,225
effective search space: 4156425475
effective search space used: 4156425475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)