Query 047572
Match_columns 595
No_of_seqs 366 out of 2327
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 12:22:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02431 ferredoxin--nitrite r 100.0 4E-127 9E-132 1066.1 55.6 552 33-587 34-585 (587)
2 PRK09567 nirA ferredoxin-nitri 100.0 9E-112 2E-116 949.0 50.5 492 75-585 63-561 (593)
3 PRK09566 nirA ferredoxin-nitri 100.0 9E-112 2E-116 938.2 47.9 501 74-586 9-509 (513)
4 PLN00178 sulfite reductase 100.0 4E-107 8E-112 911.5 50.8 481 75-585 51-589 (623)
5 TIGR02042 sir ferredoxin-sulfi 100.0 8E-105 2E-109 888.6 45.7 481 75-585 4-550 (577)
6 PRK13504 sulfite reductase sub 100.0 6E-103 1E-107 876.8 45.4 484 74-586 8-541 (569)
7 TIGR02041 CysI sulfite reducta 100.0 4.2E-98 9E-103 832.7 46.8 477 81-586 1-524 (541)
8 COG0155 CysI Sulfite reductase 100.0 1.5E-98 3E-103 817.4 40.2 485 75-594 5-491 (510)
9 KOG0560 Sulfite reductase (fer 100.0 6E-100 1E-104 786.8 27.3 560 5-594 1-612 (638)
10 TIGR02435 CobG precorrin-3B sy 100.0 2E-82 4.3E-87 682.5 40.5 380 127-532 7-387 (390)
11 TIGR02066 dsrB sulfite reducta 100.0 2.6E-43 5.7E-48 370.3 19.3 230 122-362 8-314 (341)
12 COG2221 DsrA Dissimilatory sul 100.0 4.9E-40 1.1E-44 332.4 22.0 223 126-364 20-296 (317)
13 PRK14989 nitrite reductase sub 100.0 6.3E-40 1.4E-44 381.6 23.1 217 126-361 552-770 (847)
14 TIGR02374 nitri_red_nirB nitri 100.0 1E-39 2.2E-44 379.4 22.4 208 134-361 549-756 (785)
15 TIGR02912 sulfite_red_C sulfit 100.0 3.6E-39 7.8E-44 337.8 19.9 229 122-363 6-300 (314)
16 TIGR02064 dsrA sulfite reducta 100.0 3.4E-37 7.3E-42 329.0 21.1 226 125-360 61-367 (402)
17 PRK09567 nirA ferredoxin-nitri 100.0 2.7E-36 5.9E-41 339.2 22.4 225 122-362 360-589 (593)
18 PRK09566 nirA ferredoxin-nitri 100.0 1.6E-34 3.4E-39 321.0 20.5 199 383-587 50-260 (513)
19 TIGR02066 dsrB sulfite reducta 100.0 1.1E-34 2.3E-39 305.2 17.3 196 393-590 26-292 (341)
20 TIGR02374 nitri_red_nirB nitri 100.0 1.8E-34 4E-39 335.5 19.8 193 384-588 541-733 (785)
21 PRK14989 nitrite reductase sub 100.0 4.9E-34 1.1E-38 332.4 19.6 192 384-588 552-745 (847)
22 PLN02431 ferredoxin--nitrite r 100.0 1E-33 2.2E-38 316.6 20.1 196 122-330 381-581 (587)
23 COG2221 DsrA Dissimilatory sul 100.0 1.5E-33 3.3E-38 285.3 17.9 206 381-590 15-271 (317)
24 TIGR02042 sir ferredoxin-sulfi 100.0 4.6E-33 9.9E-38 311.7 20.7 216 125-362 353-577 (577)
25 PRK13504 sulfite reductase sub 100.0 3E-33 6.4E-38 314.3 19.2 198 383-587 47-295 (569)
26 TIGR02041 CysI sulfite reducta 100.0 7.7E-33 1.7E-37 309.0 20.2 197 384-587 34-279 (541)
27 PLN00178 sulfite reductase 100.0 1.6E-32 3.5E-37 308.8 22.1 222 125-364 395-618 (623)
28 TIGR02064 dsrA sulfite reducta 100.0 5.8E-32 1.3E-36 288.8 18.6 206 385-591 60-348 (402)
29 TIGR02435 CobG precorrin-3B sy 100.0 1.6E-31 3.5E-36 287.8 18.1 182 392-586 13-199 (390)
30 PF01077 NIR_SIR: Nitrite and 100.0 2.2E-31 4.8E-36 251.8 11.7 150 208-364 2-154 (157)
31 TIGR02912 sulfite_red_C sulfit 100.0 3.9E-30 8.4E-35 269.6 16.3 197 386-586 9-268 (314)
32 COG0155 CysI Sulfite reductase 99.9 4E-26 8.7E-31 249.8 17.3 195 384-582 44-244 (510)
33 COG1251 NirB NAD(P)H-nitrite r 99.9 2.9E-26 6.2E-31 252.8 15.3 207 134-361 548-754 (793)
34 PF01077 NIR_SIR: Nitrite and 99.9 2E-23 4.3E-28 197.5 9.1 116 464-584 2-122 (157)
35 COG1251 NirB NAD(P)H-nitrite r 99.9 1.6E-22 3.5E-27 223.3 12.1 253 318-587 453-730 (793)
36 KOG0560 Sulfite reductase (fer 99.8 3.6E-19 7.8E-24 186.5 11.0 191 385-581 118-358 (638)
37 PF03460 NIR_SIR_ferr: Nitrite 99.6 4.5E-16 9.7E-21 126.9 6.4 63 136-199 7-69 (69)
38 PF03460 NIR_SIR_ferr: Nitrite 99.6 1.6E-15 3.4E-20 123.6 7.0 66 390-455 1-67 (69)
39 PRK00366 ispG 4-hydroxy-3-meth 99.0 1.4E-09 3E-14 113.1 9.9 151 385-582 204-356 (360)
40 PRK00366 ispG 4-hydroxy-3-meth 98.9 1E-08 2.2E-13 106.7 10.9 111 185-329 245-356 (360)
41 PF04551 GcpE: GcpE protein; 97.2 0.00069 1.5E-08 71.3 7.2 92 468-582 266-358 (359)
42 PF04551 GcpE: GcpE protein; 97.0 0.0018 3.9E-08 68.2 7.3 117 181-329 241-358 (359)
43 TIGR00612 ispG_gcpE 1-hydroxy- 96.8 0.0042 9.1E-08 64.9 8.6 149 384-578 194-344 (346)
44 COG0821 gcpE 1-hydroxy-2-methy 96.7 0.011 2.5E-07 61.4 10.1 94 468-585 259-353 (361)
45 TIGR00612 ispG_gcpE 1-hydroxy- 96.5 0.013 2.9E-07 61.2 9.6 117 170-325 227-344 (346)
46 COG0821 gcpE 1-hydroxy-2-methy 96.3 0.034 7.3E-07 58.1 11.2 116 185-333 238-354 (361)
47 PLN02925 4-hydroxy-3-methylbut 95.6 0.027 5.8E-07 64.1 7.0 89 468-580 632-721 (733)
48 PRK00694 4-hydroxy-3-methylbut 94.1 0.096 2.1E-06 58.5 6.4 89 468-580 508-597 (606)
49 PRK02048 4-hydroxy-3-methylbut 93.9 0.075 1.6E-06 59.8 5.2 88 469-580 517-605 (611)
50 cd01916 ACS_1 Acetyl-CoA synth 93.8 0.056 1.2E-06 62.7 4.1 45 157-202 279-323 (731)
51 PLN02925 4-hydroxy-3-methylbut 93.7 0.33 7.1E-06 55.6 9.8 107 192-334 618-725 (733)
52 cd01916 ACS_1 Acetyl-CoA synth 91.3 0.18 3.9E-06 58.6 3.9 46 414-459 277-322 (731)
53 PRK00694 4-hydroxy-3-methylbut 87.0 2.9 6.3E-05 47.1 9.1 92 213-334 509-601 (606)
54 PRK00941 acetyl-CoA decarbonyl 86.2 0.79 1.7E-05 53.6 4.4 44 157-201 316-359 (781)
55 PRK02048 4-hydroxy-3-methylbut 83.9 2.7 5.8E-05 47.7 7.0 90 214-333 518-608 (611)
56 PRK00941 acetyl-CoA decarbonyl 80.7 1.7 3.7E-05 51.0 4.2 45 414-458 314-358 (781)
57 PF01257 2Fe-2S_thioredx: Thio 46.1 83 0.0018 29.3 7.3 91 406-521 26-119 (145)
58 PF08859 DGC: DGC domain; Int 44.0 16 0.00034 32.5 2.1 55 506-577 52-106 (110)
59 COG1152 CdhA CO dehydrogenase/ 30.6 1.1E+02 0.0024 35.0 6.2 124 195-351 486-610 (772)
60 PF13089 PP_kinase_N: Polyphos 29.8 5.6 0.00012 35.3 -3.2 43 121-165 29-84 (109)
61 COG4273 Uncharacterized conser 28.6 50 0.0011 30.1 2.6 64 259-335 70-133 (135)
62 PRK07539 NADH dehydrogenase su 27.4 3.4E+02 0.0074 25.4 8.3 91 406-521 35-128 (154)
63 TIGR01958 nuoE_fam NADH-quinon 27.3 3.4E+02 0.0074 25.2 8.2 91 406-521 29-122 (148)
64 PF12802 MarR_2: MarR family; 26.3 10 0.00022 29.2 -1.9 54 150-207 3-56 (62)
65 PRK05988 formate dehydrogenase 26.1 3.6E+02 0.0078 25.5 8.2 91 406-521 36-129 (156)
66 COG1168 MalY Bifunctional PLP- 25.0 75 0.0016 34.4 3.7 39 403-441 168-207 (388)
67 PRK07539 NADH dehydrogenase su 24.8 1.9E+02 0.0042 27.1 6.1 110 150-271 2-127 (154)
68 PF08774 VRR_NUC: VRR-NUC doma 24.0 1.1E+02 0.0024 26.1 4.0 28 138-166 63-90 (100)
69 COG4273 Uncharacterized conser 23.1 49 0.0011 30.2 1.6 56 507-579 69-124 (135)
70 COG1448 TyrB Aspartate/tyrosin 21.5 1.4E+02 0.0031 32.4 4.9 91 81-199 305-395 (396)
71 COG0855 Ppk Polyphosphate kina 21.3 99 0.0022 35.8 3.9 42 121-164 38-92 (696)
72 COG4384 Mu-like prophage prote 21.1 88 0.0019 30.5 2.9 41 176-219 35-75 (203)
73 TIGR01610 phage_O_Nterm phage 20.4 40 0.00086 29.0 0.5 57 149-205 22-80 (95)
74 PF12321 DUF3634: Protein of u 20.1 2.3E+02 0.0051 25.2 5.1 54 142-196 34-88 (108)
No 1
>PLN02431 ferredoxin--nitrite reductase
Probab=100.00 E-value=4.2e-127 Score=1066.08 Aligned_cols=552 Identities=83% Similarity=1.361 Sum_probs=508.6
Q ss_pred eeccCCCcCCCCcCCCccccccccCccccccCceeeecccccCCCChhhhhhcccCCcccccccchHHHHhhhhhhcccc
Q 047572 33 VHATTPAVAPVTTTSAPEVDAERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQA 112 (595)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~ 112 (595)
.++++++++|+ ++++|.+.+++|++.+.+|+|.|+++.++++|++|++|.|++||++++.++|++||+.+|++|+..
T Consensus 34 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ln~~E~~K~~~~~~~~~~~~~i~~~a~~g~~~i~~~ 110 (587)
T PLN02431 34 EVAAAATVSPP---ATAAVDADRLEPRVEERDGYWVLKEEFRKGINPQEKVKLEKEPMKLFMENGIEELAKTPFEEIDKS 110 (587)
T ss_pred cccCCcccCcc---ccccccccccCccccCCCCceeechhhcccCCHHHHhhcccCcccccchhhHHHHHhcChhhcCcc
Confidence 34555555554 557899999999999999999999888999999999999999999985357999999998887743
Q ss_pred cCCchhHHHHHhhcccceecccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHH
Q 047572 113 KNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEI 192 (595)
Q Consensus 113 ~~~~~d~~~rlk~~G~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i 192 (595)
..++||++.||||+|+|+|+++++++||||||+|+|.||++||+.||+||++||.+|++|||||||||||||+.+|++++
T Consensus 111 ~~~~~d~~~r~kw~Gl~~~~~~~~~~fMlRvRiPgG~lt~~Qlr~la~ia~~yg~~G~i~iTtRqniQl~gI~~ed~p~i 190 (587)
T PLN02431 111 KLSKDDIDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSAQTRYLASVIEKYGEDGCADVTTRQNWQIRGVVLPDVPAI 190 (587)
T ss_pred cCChHHHHhhhhheeeeeecCCCCCceEEEEecCCcccCHHHHHHHHHHHHHhCCCCeEEEecCcceEeCCCCHHHHHHH
Confidence 45569999999999999998888999999999999999999999999999999944899999999999999999999999
Q ss_pred HHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcC
Q 047572 193 LKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHP 272 (595)
Q Consensus 193 ~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~ 272 (595)
+++|+++||++.++|||++|||++||++|+|+++++||++|+++|+++|.+.+.+||++.+|||||||+|+||+++|+++
T Consensus 191 ~~~L~~vGL~t~~a~gd~vRNI~~~P~aG~~~~e~~Dt~pla~~l~~~~~~~~~~~~~~~~LPrKfkiavsG~~~~~~~~ 270 (587)
T PLN02431 191 LKGLEEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSDYITNNGRGNPEITNLPRKWNVCVVGSHDLFEHP 270 (587)
T ss_pred HHHHHHcCCCchhccCCCCCCcccCCCCCCCccccccHHHHHHHHHHHhhhcccCCcccccCCCCeEEEEecCccccccc
Confidence 99999999999999999999999999999999999999999999999998766679999999999999999999999999
Q ss_pred ccCceEEEeEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhCh
Q 047572 273 HINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGI 352 (595)
Q Consensus 273 ~~~DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~ 352 (595)
.+|||||+++.++|+.||+|+|||++|.++...+..++.||++||+++++++|+++|+++|+|++|+|+||+|+|++||+
T Consensus 271 ~~nDigf~~~~~~g~~Gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~v~~av~~~f~d~G~R~~R~kaRlk~li~~~G~ 350 (587)
T PLN02431 271 HINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVPADDVVPLCKAILEAFRDLGTRGNRQKTRMMWLIDELGV 350 (587)
T ss_pred cccceEEEEEEECCceEEEEEEeCCcCCCCccccchhhcccCHHHHHHHHHHHHHHHHHhCCccchhhhHHHHHHHHhhH
Confidence 99999999998888889999999999977656777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCCchhhhcccCCCCccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEc
Q 047572 353 EGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLT 432 (595)
Q Consensus 353 e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT 432 (595)
|+|+++|+++++..+|+.....+.+.+.|.+++|+|||+|+++|+|||++++|+|+|+++||+.||++|++||+|+||||
T Consensus 351 e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~Qk~~G~~~v~v~vp~Grlt~~qL~~LA~lA~~yG~g~irlT 430 (587)
T PLN02431 351 EGFRSEVEKRMPNGELERAASEDLVDKKWERRDYLGVHPQKQEGLSYVGLHVPVGRLQAADMDELARLADEYGSGELRLT 430 (587)
T ss_pred HHHHHHHHHHhccCCCCcccccccccchhcccceeEEEeeccCCeEEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEc
Confidence 99999999988645676554433323457788999999999999999999999999999999999999999999999999
Q ss_pred CCCceEeeccChhhHHHHHHhhhcCCCCCCCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeee
Q 047572 433 VEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWT 512 (595)
Q Consensus 433 ~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iS 512 (595)
+||||+|+||+.++++++++++...++...+++.+++++||+|+++|+++++||++++.+|.++|.+.+.+|++++||||
T Consensus 431 ~~Qni~i~~V~~~~v~~l~~~l~~~g~~~~~~~~~r~vvACtG~~~C~~ai~eTk~~A~~L~~~l~~~~~lp~k~kI~vS 510 (587)
T PLN02431 431 VEQNIIIPNVPNSKVEALLAEPLLQRFSPNPGLLLKGLVACTGNQFCGQAIIETKARALKVTEELERLVEVPRPVRMHWT 510 (587)
T ss_pred CCCCEEECCCCHHHHHHHHHHHHhcCCCCCCCCCccceeECCCccccCccHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence 99999999999999999999987677877888899999999999999999999999999999999877889999999999
Q ss_pred cCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHHhHh
Q 047572 513 GCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVL 587 (595)
Q Consensus 513 GCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~~~ 587 (595)
||||+|++|+++||||+|+..++.+|+.++||+||+||+.|.++++|+.+..+|+++||+++++++|.+||++..
T Consensus 511 GCpn~C~~~~iaDIG~vG~~~~~~~g~~v~gf~V~lGG~~G~~~~~g~~l~~~Vp~eel~~~v~~il~~~~~~~~ 585 (587)
T PLN02431 511 GCPNSCGQVQVADIGFMGCMARDENGKAVEGADIFVGGRVGSDSHLAEEYKKGVPCDELVPVVADILIEEFGAKE 585 (587)
T ss_pred CCcccccccccccEEEEeeeeecCCCccceEEEEEECCcCCCCCccchhhhcCCCHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999876545788889999999999999999999999999999999999999999999853
No 2
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=9e-112 Score=949.02 Aligned_cols=492 Identities=34% Similarity=0.557 Sum_probs=447.2
Q ss_pred CCCChhhhhhcccCCcccccccchHHHHhhhhhhcccccCCchhHHHHHhhcccceecccCCCeEEEEEecCCCccCHHH
Q 047572 75 KGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQ 154 (595)
Q Consensus 75 ~~~~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~~~~~~~~~fmvRvripgG~lt~~Q 154 (595)
+|+|++|+||.+||||+++ ++|.+++..+ .++++|.++||||||+|++.+ ..+.||||||+|+|+||++|
T Consensus 63 ~kl~~~E~~K~~~~~l~~~--~~l~~~~~~~-------~~~~~~~~~~~k~~G~y~~~~-~~~~fM~RvripgG~lt~~Q 132 (593)
T PRK09567 63 KKLCDQEKWKREENPFDAW--DRLKAQAAAG-------AFPKPADNFRWKYHGLFYVAP-AQDSYMCRLRIPNGILTHWQ 132 (593)
T ss_pred CCCCHHHHHhhcCCcchhh--hHHHHHHhcC-------CCCChhhhhhhccceEEEEcc-cCCeEEEEEEeCCeecCHHH
Confidence 6799999999999999998 8899988653 355566668999999998744 34689999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHHH
Q 047572 155 TRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYT 234 (595)
Q Consensus 155 lr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la 234 (595)
|++|++||++|| +|++|||||||||||||.++|+++++++|.++||+|.++|||++|||++||++|+|+++++|+++++
T Consensus 133 ~~~la~ia~~yg-~g~~~lTTRq~iQlhgI~~~d~~~i~~~l~~~GL~t~~a~gD~~RNV~~~P~ag~~~~e~~D~~~~a 211 (593)
T PRK09567 133 FAGLADLADRHG-GGYSHVTTRANLQLREIPPEHAVPVLEGLVDLGLTARGSGADNIRNVTGSPTAGIDPQELLDTRPYA 211 (593)
T ss_pred HHHHHHHHHHHC-CCeEEEeccccEEeccCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCcCCCCCCCCChhhccchHHHH
Confidence 999999999999 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEeEee-cCc-----eeEEEEEcCcCCCcccccccc
Q 047572 235 NLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATK-DGR-----FGFNLLVGGFFSPKRCAEAIP 308 (595)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~~-~g~-----~gf~v~vGG~~g~~~~~~~~~ 308 (595)
++|+++|.+ ++.+++|||||||+||||+++|.++.+|||||+++.+ +|. .||+|++||++|.++ .+..
T Consensus 212 ~~l~~~~~~----~~~~~~LPrKfkiaisg~~~~~~~~~~nDigf~a~~~~~g~~~~~g~gf~v~vGG~~g~~~--~a~~ 285 (593)
T PRK09567 212 REWHHHILN----DRSLYGLPRKFNVAFDGGGRIATLEDTNDIGFQAVRVLEGAGVAPGVYFRLVLGGITGHKD--FARD 285 (593)
T ss_pred HHHHHHHhC----CchhcCCCCCeEEEEECCCcccccccccceeeEEEEecCCccccccceEEEEEecccCCCc--chhh
Confidence 999999875 6778899999999999999999999999999999875 443 589999999998653 3567
Q ss_pred ccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHHhhCCCCCCCCCCCchh-hhcccCCCCcc
Q 047572 309 LDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDL-VQRQWDRRDYL 387 (595)
Q Consensus 309 l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 387 (595)
++.||++|++++++++|+++|+|+|+|.+|+++||||+|++||+|+|+++|+++++ ..+...+.+.. +...|.+.+|+
T Consensus 286 ~~~~v~~e~v~~~~~Ai~~~f~d~G~R~~R~~aRlk~li~~~G~e~f~~~ve~~~~-~~l~~~~~~~~~~~~~~~~~~~~ 364 (593)
T PRK09567 286 TGVLLRPEEATAVADAIVRVFIENGDRTNRKKARLKYVLDAWGFDKFLEAVEEKLG-RPLTRVPAEAVAPRPAADRFAHV 364 (593)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHHHHCHHHHHHHHHHHhc-ccccccchhhcCCCcchhccccc
Confidence 77889999999999999999999999999999999999999999999999999997 66654332221 12235677899
Q ss_pred ceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCCCCCCc
Q 047572 388 GVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILM 467 (595)
Q Consensus 388 Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~~~~~ 467 (595)
|||+|+|+|+|||++++|+|+|+++||+.||+||++||+|+||||+||||+|+||+.++++++++++...|+.+.++..+
T Consensus 365 Gv~~Qkq~G~~~v~v~vp~Grlt~~ql~~LA~iA~~yg~g~irlT~~Qni~l~~V~~~~~~~l~~~L~~~Gl~~~~~~~r 444 (593)
T PRK09567 365 GVHPQKQPGLNWIGVVLPVGRLTTDQMRGLAKIAARYGDGEIRLTVWQNLLISGVPDADVAAVEAAIEALGLTTEASSIR 444 (593)
T ss_pred eeeccCCCCceEEEEECCCCccCHHHHHHHHHHHHHhCCCEEEEeCCCCeEEcCCCHHHHHHHHHHHHHcCCCCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888887766777
Q ss_pred cceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEE
Q 047572 468 KGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVF 547 (595)
Q Consensus 468 r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~ 547 (595)
++++||+|+++|+++++||++++.+|.++|+..+.+|.+|+||||||||+|++|+++||||+|...+..+|+.+++|+||
T Consensus 445 ~~~vAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~~l~~~ikI~vSGCpn~Ca~~~iaDIGfvG~~~~~~~g~~~~gy~v~ 524 (593)
T PRK09567 445 AGLVACTGNAGCKFAAADTKGHALAIADYCEPRVALDQPVNIHLTGCHHSCAQHYIGDIGLIGAKVAVSEGDTVEGYHIV 524 (593)
T ss_pred eccEecCCCCCCCccHhhHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccccccccCCEEEEeeEeccCCCCccceEEEE
Confidence 78999999999999999999999999999998778899999999999999999999999999987543466777899999
Q ss_pred EcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHHh
Q 047572 548 LGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGA 585 (595)
Q Consensus 548 lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~ 585 (595)
+||+.|.++++|+.+...|+.++++++++.++. +|.+
T Consensus 525 lGG~~g~~~~lg~~~~~~vp~eev~~~l~~ll~-~y~~ 561 (593)
T PRK09567 525 VGGGFGEDAAIGREVFRDVKAEDAPRLVERLLR-AYLA 561 (593)
T ss_pred ECCCCCCCCCcchHhhcCCCHHHHHHHHHHHHH-HHHH
Confidence 999999889999999999999999999999986 4544
No 3
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=9.2e-112 Score=938.18 Aligned_cols=501 Identities=56% Similarity=1.007 Sum_probs=464.9
Q ss_pred cCCCChhhhhhcccCCcccccccchHHHHhhhhhhcccccCCchhHHHHHhhcccceecccCCCeEEEEEecCCCccCHH
Q 047572 74 RKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSE 153 (595)
Q Consensus 74 ~~~~~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~~~~~~~~~fmvRvripgG~lt~~ 153 (595)
.+|+||+|++|.|++||+++ ++|.+||+.+++ .++++|++.|+||+|+|++ ++++|+||||||+|+|.||++
T Consensus 9 ~~~~n~~E~~K~~~~~~~~~--~~i~~~a~~~~~-----~~~~~d~~~~~~~~G~~~~-~~~~g~fmvRvrip~G~lt~~ 80 (513)
T PRK09566 9 GKKLNKIEKNKAEKDGLAVK--DELEKFAQIGWE-----AMDETDLELRLKWLGMFWR-PVTPGKFMLRLRVPNGILTSE 80 (513)
T ss_pred cccCCHHHHhhcccCHHHHH--HHHHHHHHhCcc-----cCCHHHHhhhheeeEEeeE-cCCCCeEEEEeccCCccCCHH
Confidence 36899999999999999999 889999988754 4568899889999999976 556789999999999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHH
Q 047572 154 QTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPY 233 (595)
Q Consensus 154 Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~l 233 (595)
||+.||++|++||.+|++|||||||||||||+.+++++++++|.++||++.++|||++|||++||++|+|+++++|+++|
T Consensus 81 Qlr~la~ia~~yg~~g~i~lTtRQniql~~i~~~dl~~i~~~L~~~GL~~~~~~~d~vRnv~~~P~ag~~~~e~~D~~~l 160 (513)
T PRK09566 81 QLRVLASIVQRYGDDGSADITTRQNLQLRGILLEDLPEILNRLKAVGLTSVQSGMDNVRNITGSPVAGIDPDELIDTRPL 160 (513)
T ss_pred HHHHHHHHHHHhCCCCeEEEEcccceeecCCcHHHHHHHHHHHHHcCCCchhccCCCCCCccCCCCCCCCcchhhHHHHH
Confidence 99999999999993389999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEeEeecCceeEEEEEcCcCCCccccccccccccC
Q 047572 234 TNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWV 313 (595)
Q Consensus 234 a~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v 313 (595)
+++|.++|.++..+++++.+|||||||+||||+++|+++++|||||+++.+++..||+|+|||++|..+...+..+..||
T Consensus 161 a~~l~~~~~~~~~~~~~~~~LPrKfki~vsGc~~~c~~~~i~DiG~~~~~~~~~~gf~v~vGG~~g~~~~~~~~~l~~~v 240 (513)
T PRK09566 161 TQKLQDMLTNNGEGNPEFSNLPRKFNIAIAGGRDNSVHAEINDIAFVPAYKDGVLGFNVLVGGFFSSQRCAYAIPLNAWV 240 (513)
T ss_pred HHHHHHHhhcccCCCCcccCCCCceEEEEECCCCCcccccccceEEEEEEECCeeEEEEEEecccCCCCCcCceeeeeec
Confidence 99999999865556889999999999999999999999999999999998777789999999999875555688899999
Q ss_pred ChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHHhhCCCCCCCCCCCchhhhcccCCCCccceeecc
Q 047572 314 AADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQK 393 (595)
Q Consensus 314 ~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk 393 (595)
+++++++++++|+++|+++|+|.+|+|+||+|+|++||+++|+++++++++ ..+.+..+.+. ..|...+|+|||+|+
T Consensus 241 ~~e~v~~~~~av~~~f~~~g~r~~r~k~Rl~~lv~~~G~e~f~~~v~~~~~-~~~~~~~~~~~--~~~~~~~~~Gv~~qk 317 (513)
T PRK09566 241 KPDEVVRLCRAILEVYRDNGLRANRQKGRLMWLIDEWGIEKFRAAVEAQFG-PPLLTAAPGDE--IDWEKRDHIGVHPQK 317 (513)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcccchhhhHHHHHHHhhHHHHHHHHHHHhC-cccCCcccchh--hccccccccceeecC
Confidence 999999999999999999999999999999999999999999999999987 56554433222 246677899999999
Q ss_pred cCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCCCCCCccceeec
Q 047572 394 QEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVAC 473 (595)
Q Consensus 394 ~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~~~~~r~v~AC 473 (595)
++|+|||++++|+|+++++||+.||++|++||.|+||||+||||+|+||+.++++++++++...++...+++.+++++||
T Consensus 318 ~~G~~~v~v~vp~G~lt~~~l~~la~ia~~yg~g~irlT~~Qni~l~~i~~~~v~~l~~~~~~~~~~~~~~~~~~~~vaC 397 (513)
T PRK09566 318 QAGLNYVGLHVPVGRLYAEDMFELARLAEVYGSGEIRLTVEQNVIIPNIPDENLETFLAEPLLQKFSLEPGPLARGLVSC 397 (513)
T ss_pred cCCeEEEEEEcCCccCCHHHHHHHHHHHHHhCCCeEEEcCCCCEEEeCCCHHHHHHHHHHHhhccCCCCCCccccCceeC
Confidence 99999999999999999999999999999999999999999999999999999999999976677777778899999999
Q ss_pred CCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCC
Q 047572 474 TGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIG 553 (595)
Q Consensus 474 ~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g 553 (595)
+|+++|+++++||++++..|+++|++.+.+|.+++||||||||+|++|+++||||+|...+ .+|+++++|+||+||+.|
T Consensus 398 ~G~~~C~~a~~dT~~~a~~l~~~l~~~~~lp~~~kI~iSGCpn~C~~~~iaDIG~~G~~~~-~dg~~~~g~~i~lGG~~g 476 (513)
T PRK09566 398 TGNQYCNFALIETKNRALALAKELDAELDLPQPVRIHWTGCPNSCGQPQVADIGLMGTKAR-KNGKTVEGVDIYMGGKVG 476 (513)
T ss_pred cCcccccccHhhHHHHHHHHHHHHHHhcCCCCceEEEEECChhhhhchhhCCEEEEEEEee-cCCcccceEEEEeCCccC
Confidence 9999999999999999999999998878899999999999999999999999999999765 578888999999999999
Q ss_pred CCCcccccccCCCCccCHHHHHHHHHHHHHHhH
Q 047572 554 SDSHLGDIYKKGVPCKDLVPLVADILVEHFGAV 586 (595)
Q Consensus 554 ~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~~ 586 (595)
.++++|+.+...|++++++++++.||.+||++.
T Consensus 477 ~~~~~g~~~~~~v~~~ev~~~i~~l~~~~~~~~ 509 (513)
T PRK09566 477 KDAKLGECVQKGIPCEDLKPVLKDLLIEQFGAK 509 (513)
T ss_pred ccccccchhhcCcCHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999984
No 4
>PLN00178 sulfite reductase
Probab=100.00 E-value=3.7e-107 Score=911.46 Aligned_cols=481 Identities=23% Similarity=0.400 Sum_probs=426.3
Q ss_pred CCCChhhhhhcccCCcccccccchHHHHhhhhhhcccccCCchhHHHHHhhcccceecccC-----CCeEEEEEecCCCc
Q 047572 75 KGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKHH-----YGRFMMRLKLPNGV 149 (595)
Q Consensus 75 ~~~~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~~~~~~-----~~~fmvRvripgG~ 149 (595)
+|+||+|+||.+||+|++ +.+++|++. ++.+++||.+ ++||||+|+|+.+. .++||||+|+|+|+
T Consensus 51 ~k~~~~E~~K~~s~~l~~---~~~~~l~~~------~~~~~~~d~~-~~K~~G~y~q~~r~~r~~~~~~fMlRvriPgG~ 120 (623)
T PLN00178 51 PKRSKVEIIKENSNFLRH---PLNEELATE------APNINEDAVQ-LIKFHGSYQQDNREKRGGKAYQFMLRTKQPAGK 120 (623)
T ss_pred CCCCHHHHHhhhcCCCcc---hHHHHHHhc------cCCCChhHHh-HhheeeeeeecCccccCCcCcceEEEEecCCcc
Confidence 469999999999999975 557888875 3578889985 99999999975432 36899999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccC
Q 047572 150 TTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVD 229 (595)
Q Consensus 150 lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~d 229 (595)
+|++||++|++||++|| +|+||||||||||||||.++|+++++++|.++|++|.++|||++||||+||. +++..+++|
T Consensus 121 lt~~Q~~~la~iA~~yg-~g~l~lTTRq~iQlhgI~~~dl~~i~~~L~~~gl~t~~a~gD~~RNV~~~p~-p~~~~e~~d 198 (623)
T PLN00178 121 VPNRLYLVMDDLADEFG-IGTLRLTTRQTFQLHGVLKKDLKTVMSSIIKNMGSTLGACGDVNRNVLAPAA-PFARKDYLF 198 (623)
T ss_pred cCHHHHHHHHHHHHHhC-CCeEEEecccceEEcCCCHHHHHHHHHHHHHcCCCcccccCCCCCCeecCCC-cCCchhhhh
Confidence 99999999999999999 5999999999999999999999999999999999999999999999999994 688889999
Q ss_pred hHHHHHHHHHHHHhcc----------------------------------CCCCC----ccCCCCceEEEEecCCCCCCc
Q 047572 230 TRPYTNLLSHFITANA----------------------------------QGNPT----VTNLPRKWNVCVVGSHDLYEH 271 (595)
Q Consensus 230 t~~la~~l~~~~~~~~----------------------------------~~~~~----~~~LPrKfkI~isgc~~~c~~ 271 (595)
++++|++|+++|.+++ .++++ ..+|||||||+|+||+++|.+
T Consensus 199 ~~~~a~~l~~~l~p~t~~y~e~~ld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ep~yg~~~LPRKFKiavsg~~~n~~~ 278 (623)
T PLN00178 199 AQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKARNDNSHGTNFEDSPEPIYGTQFLPRKFKIAVTVPGDNSVD 278 (623)
T ss_pred HHHHHHHHHHhhcccccchhhhhcccccccccccchhhhhhhcccccccccCCccccccccCCCCCeEEEEecCcccccc
Confidence 9999999999876322 23443 348999999999999999999
Q ss_pred CccCceEEEeEeec-Cc-eeEEEEEcCcCCCcc------ccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhh
Q 047572 272 PHINDLAYMPATKD-GR-FGFNLLVGGFFSPKR------CAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRM 343 (595)
Q Consensus 272 ~~~~DIg~v~~~~~-g~-~gf~v~vGG~~g~~~------~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl 343 (595)
+++|||||+++.++ |+ .||+|+|||++|+++ +..+..++ ||++||+++++++|+++|+|+|+|.+|+++||
T Consensus 279 ~~~nDiG~~a~~~~~g~~~Gf~v~vGGg~g~~~~~~~t~pr~a~~l~-~v~~e~v~~v~~av~~~~rd~G~R~~R~~aRl 357 (623)
T PLN00178 279 ILTNDIGVVVVSDEAGEPQGYNIYVGGGMGRTHRNETTFPRLADPLG-YVPKEDILYAVKAIVATQRDYGRRDDRKQSRM 357 (623)
T ss_pred ccccceEEEEEEeCCCcEeeEEEEEECccccCCCccCCCCccccccC-cCCHHHHHHHHHHHHHHHHHhCcccchhhhHH
Confidence 99999999999874 54 699999999999642 24566775 99999999999999999999999999999999
Q ss_pred HHHHHhhChHHHHHHHHhhCCCCCCCCCCCchhhhcccCCCCccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHH
Q 047572 344 MWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADA 423 (595)
Q Consensus 344 ~~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~ 423 (595)
||+|++||+|+|+++|+++++ +.+++..+. +.|...+|+|||+|+ +|+|++++++|+|+|+++||+.||+||++
T Consensus 358 k~li~~~G~e~f~~~ve~~~g-~~~~~~~~~----~~~~~~d~~G~~~q~-dG~~~v~l~vp~Grit~~~l~~La~iAe~ 431 (623)
T PLN00178 358 KYLVHSWGIEKFRSVVEQYYG-KKFEPFREL----PEWEFKSYLGWHEQG-DGKLFYGVHVDNGRIKGEAKKALREVIEK 431 (623)
T ss_pred HHHHHHHCHHHHHHHHHHHhc-ccccCCCCc----cccccccceeEEEcc-CCcEEEEEecCCeecCHHHHHHHHHHHHH
Confidence 999999999999999999997 677655432 347788999999997 59999999999999999999999999999
Q ss_pred hCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCC--CCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhh
Q 047572 424 YGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSP--QPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLV 501 (595)
Q Consensus 424 yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~--~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~ 501 (595)
||. +||||+||||+|+||++++++++.+.+...|+.. ..++.+++++||+|+++|+++++||++++..|.++++..+
T Consensus 432 yg~-~iRlT~~Qnlil~~I~~~~~~~i~~~L~~~Gl~~~~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~~~l~~~~ 510 (623)
T PLN00178 432 YNL-PVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPEEVDPLNRTAMACPALPLCPLAITEAERGIPDILKRVRAMF 510 (623)
T ss_pred hCC-cEEEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCcceeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 985 8999999999999999999999988887777753 3567889999999999999999999999999999887643
Q ss_pred ---c--CCCCceEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCCCcccccccCCCCccCHHHHHH
Q 047572 502 ---D--VTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVA 576 (595)
Q Consensus 502 ---~--lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~ 576 (595)
. ++.+|+||||||||+|++|+++||||+|.. .++|+||+||+. .++++|+.+...|++++|+++++
T Consensus 511 ~~~~l~~~~~i~I~vSGCpNgCarp~iaDIGlvG~~--------~~~Y~I~lGG~~-~~~~la~~~~~~V~~eei~~~le 581 (623)
T PLN00178 511 NKVGLKYDESVVVRMTGCPNGCARPYMAELGFVGDG--------PNSYQIWLGGTP-NQTRLAEPFMDKVKVDDLEKVLE 581 (623)
T ss_pred hhcCCCCCCceEEEEeCCCccccccccCcEEEEcCC--------CCeEEEEECCCC-CcccccchhhcCcCHHHHHHHHH
Confidence 2 358999999999999999999999999952 257999999985 46889999999999999999999
Q ss_pred HHHHHHHHh
Q 047572 577 DILVEHFGA 585 (595)
Q Consensus 577 ~ll~~~~~~ 585 (595)
.++. +|.+
T Consensus 582 ~ll~-~y~~ 589 (623)
T PLN00178 582 PLFY-MWKQ 589 (623)
T ss_pred HHHH-HHHH
Confidence 9884 5554
No 5
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=8.1e-105 Score=888.61 Aligned_cols=481 Identities=26% Similarity=0.420 Sum_probs=419.7
Q ss_pred CCCChhhhhhcccCCcccccccchHHHHhhhhhhcccccCCchhHHHHHhhcccceecccC--------CCeEEEEEecC
Q 047572 75 KGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKHH--------YGRFMMRLKLP 146 (595)
Q Consensus 75 ~~~~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~~~~~~--------~~~fmvRvrip 146 (595)
+++||+|+||.+|++|++.|.++|.+.+ +.|++||.+ +|||||+|+|+.+. .++||+|+|+|
T Consensus 4 ~~~~~~e~~k~~s~~l~~~~~~~l~~~~---------~~~~~~d~~-~lK~~G~y~q~~r~~r~~~~~~~~~fM~RiriP 73 (577)
T TIGR02042 4 QKRSKVEILKERSNFLREPLNEQLLEEA---------THFNEDAVQ-ILKFHGSYQQDNRDNRGKGQEKDYQFMLRTKNP 73 (577)
T ss_pred CCCChHHHHhhhcccccCcHHHHhhccc---------cCCChhHHH-HHhheeeeeecCccccccccCccceEEEEEecC
Confidence 3599999999999999998766555533 467889985 99999999975432 24999999999
Q ss_pred CCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCC-
Q 047572 147 NGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPE- 225 (595)
Q Consensus 147 gG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~- 225 (595)
+|++|++||+.|++||++|| +|++|||||||||||||.++++++++++|.++|++|.++|||++||||+||+ +.|..
T Consensus 74 gG~lt~~q~~~ia~ia~~yg-~g~~~iTtRq~iql~gi~~~~~~~~~~~l~~~~l~t~~a~gd~~RNV~~~P~-~~~~~~ 151 (577)
T TIGR02042 74 GGYVPPQLYLTLDDLADEYG-NGTLRATTRQTFQLHGILKKNLKTVISTIVKNLGSTLGACGDLNRNVMAPPA-PFRKRP 151 (577)
T ss_pred CcccCHHHHHHHHHHHHHhC-CCcEEEEcccceEeCCCCHHHHHHHHHHHHHhCCCceeccCCCCCCeecCCC-ccccch
Confidence 99999999999999999999 5999999999999999999999999999999999999999999999999997 56665
Q ss_pred CccChHHHHHHHHHHHHhccC-------------------------------------CCCCc--cCCCCceEEEEecCC
Q 047572 226 EIVDTRPYTNLLSHFITANAQ-------------------------------------GNPTV--TNLPRKWNVCVVGSH 266 (595)
Q Consensus 226 ~~~dt~~la~~l~~~~~~~~~-------------------------------------~~~~~--~~LPrKfkI~isgc~ 266 (595)
+++|+.+++.+|.++|.+++. .+|.+ ++|||||||+|+||+
T Consensus 152 ~~~~~~~~a~~i~~~~~p~t~a~~e~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPRKFKi~vsg~~ 231 (577)
T TIGR02042 152 EYEFAREYADNIADLLTPQSGAYYELWLDGEKVMSAEPDPEVVAARNDNSHGTNFADSPEPLYGTQYLPRKFKIAVTVPG 231 (577)
T ss_pred hHHHHHHHHHHHHHhhcccccchhheecccccccccccchhhhhhhhcccccccccCCccccccccCCCCCceEEEEcCC
Confidence 899999999999998653221 12223 589999999999999
Q ss_pred CCCCcCccCceEEEeEeec-Cc-eeEEEEEcCcCCCccc------cccccccccCChhcHHHHHHHHHHHHHHhccCCCc
Q 047572 267 DLYEHPHINDLAYMPATKD-GR-FGFNLLVGGFFSPKRC------AEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNR 338 (595)
Q Consensus 267 ~~c~~~~~~DIg~v~~~~~-g~-~gf~v~vGG~~g~~~~------~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R 338 (595)
++|.++++|||||+++.++ |+ .||+|+|||++|.++. ..+.+++ ||++||+++++++|+++|+|||+|.||
T Consensus 232 ~~~~~~~~nDlgf~a~~~~~g~~~Gf~v~vGGglg~~~~~~~t~p~~a~~l~-~v~~e~v~~~~~av~~~~rd~G~R~nR 310 (577)
T TIGR02042 232 DNSIDLFTQDIGLVVVSNERGELEGFNIYVGGGMGRTHNKEETFARLADPLG-YVPKEDIYYAVKAIVATQRDYGDRDDR 310 (577)
T ss_pred CCcccceecceEEEEEEeCCCcEeeEEEEEecccCCCCCCccccchhccccC-cCCHHHHHHHHHHHHHHHHHhCChhhh
Confidence 9999999999999999874 55 6999999999997652 3466674 999999999999999999999999999
Q ss_pred cchhhHHHHHhhChHHHHHHHHhhCCCCCCCCCCCchhhhcccCCCCccceeecccCCeEEEEEEcCCcccCHH---H-H
Q 047572 339 QKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQAD---D-M 414 (595)
Q Consensus 339 ~kaRl~~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~---q-l 414 (595)
+++||||+|++||+|+|+++|+++++ +.+++..+. +.|...+|+||++|+ +|+|+|++++|+|+|+++ + +
T Consensus 311 ~~aRlk~li~~~G~e~f~~~ve~~~~-~~~~~~~~~----~~~~~~d~~G~~~q~-dG~~~v~l~vp~Grl~~~~~~~l~ 384 (577)
T TIGR02042 311 RHARMKYLISDWGIEKFREVVEQYFG-KKIAPVREL----PEFEYKDYLGWHEQG-DGKWFLGLHIDSGRVKDDGNWQLK 384 (577)
T ss_pred hhHHHHHHHHHHCHHHHHHHHHHHhc-cccCCcccC----CcccccccceEEECC-CceEEEEEEecCceecCCchHHHH
Confidence 99999999999999999999999997 667654432 246678999999986 899999999999999996 4 4
Q ss_pred HHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCC--CCCCCccceeecCCccccchhhhHHHHHHHH
Q 047572 415 DELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSP--QPSILMKGLVACTGNQFCGQAIIETKARALK 492 (595)
Q Consensus 415 ~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~--~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~ 492 (595)
+.|++||++||. ++|||+||||+|+||+.++++++.+.+...|+.. .+++.+++++||+|+++|+++++||++.+..
T Consensus 385 ~~LaeIA~~yg~-~irlT~~Qnl~l~~V~~~~~~~i~~~L~~~Gl~~~~~~~~~~~~~~aC~G~~~C~lal~et~~~~~~ 463 (577)
T TIGR02042 385 KALREIVEKYNL-PVRLTPNQNIILYDIQPEWKRAITTVLAQRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPG 463 (577)
T ss_pred HHHHHHHHHhCC-CEEEcCCCCeEECCCCHHHHHHHHHHHHhcCCCCCCCCCccceeeEeCCCcccccCchHHHHHHHHH
Confidence 799999999985 8999999999999999999999888776667653 3677889999999999999999999988877
Q ss_pred HHHHHHhhh---cC-CCCceEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCCCcccccccCCCCc
Q 047572 493 VTKEVERLV---DV-TKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPC 568 (595)
Q Consensus 493 l~~~l~~~~---~l-p~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~~~v~~ 568 (595)
+++.++..+ .+ |++++||||||||+|++|+++||||+|.. .++|+||+||+.+ ++++|+.+..+|++
T Consensus 464 l~~~l~~l~~~~~l~~~~i~I~vSGCpn~Ca~p~iaDIG~vG~~--------~~~y~l~lGG~~~-~~rla~~~~~~vp~ 534 (577)
T TIGR02042 464 ILKRIRALLEKVGLPDEHFVVRMTGCPNGCARPYMAELGFVGSA--------PNSYQVWLGGSPN-QTRLARPFIDKLKD 534 (577)
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEECCCccccCCCcCcEEEECCC--------CCcEEEEECCCCC-cccchhHHhcCcCH
Confidence 776665433 45 48999999999999999999999999963 2579999999986 57899999999999
Q ss_pred cCHHHHHHHHHHHHHHh
Q 047572 569 KDLVPLVADILVEHFGA 585 (595)
Q Consensus 569 eel~~~l~~ll~~~~~~ 585 (595)
++++++++.++. +|.+
T Consensus 535 ~ei~~vl~~ll~-~y~~ 550 (577)
T TIGR02042 535 GDLEKVLEPLFV-HFKQ 550 (577)
T ss_pred HHHHHHHHHHHH-HHHH
Confidence 999999999885 5554
No 6
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=100.00 E-value=6.2e-103 Score=876.80 Aligned_cols=484 Identities=26% Similarity=0.424 Sum_probs=425.8
Q ss_pred cCCCChhhhhhcccCCcccccccchHHHHhhhhhhcccccCCchhHHHHHhhcccceecccC------------CCeEEE
Q 047572 74 RKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKHH------------YGRFMM 141 (595)
Q Consensus 74 ~~~~~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~~~~~~------------~~~fmv 141 (595)
.+|+|++|+||.+|++|+..| +++|++.+ +++|++||++ +|||||+|+|+++. ++.|||
T Consensus 8 ~~~~~~~E~~K~~~~~l~~~i---~~~~~~~~-----~~~~~~~~~~-~lk~~G~y~q~~r~~r~~~~~~~~~~~~~fm~ 78 (569)
T PRK13504 8 EGKLSDVERIKLESNYLRGTI---AEELNDGL-----TGGFSEDDFQ-LLKFHGSYQQDDRDIRAERAEQKLEPAYQFML 78 (569)
T ss_pred CCCCChHHHhhccCcCccchH---HHHHHhhc-----cCCCCHHHHH-HHhheeeeEecchhhhhhhcccccCcCcceEE
Confidence 357999999999999998543 24577654 4677789985 99999999976421 247999
Q ss_pred EEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCceecCCCCC
Q 047572 142 RLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAG 221 (595)
Q Consensus 142 RvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag 221 (595)
|||+|+|+||++||+.||+||++|| +|++|||||||||||||+++++++++++|.++||++.++|||++|||++||+ +
T Consensus 79 RvriP~G~lt~~Ql~~la~la~~yg-~G~i~lTtRQniQL~gI~~~~l~~i~~~L~~~gl~t~~a~gd~~RNV~~~p~-~ 156 (569)
T PRK13504 79 RCRLPGGVITPQQWLALDKLADEYG-NGTLRLTTRQTFQFHGILKKNLKPVIQTINSVLLDTLAACGDVNRNVMCTPN-P 156 (569)
T ss_pred EEecCCCccCHHHHHHHHHHHHHhC-CCeEEEecccceeecCCchHhHHHHHHHHHHcCCCcccccCCCCCceecCCC-c
Confidence 9999999999999999999999999 5999999999999999999999999999999999999999999999999996 5
Q ss_pred CCCCCccChHHHHHHHHHHHHhccC-------------------CCCCc--cCCCCceEEEEecCCCCCCcCccCceEEE
Q 047572 222 IDPEEIVDTRPYTNLLSHFITANAQ-------------------GNPTV--TNLPRKWNVCVVGSHDLYEHPHINDLAYM 280 (595)
Q Consensus 222 ~~~~~~~dt~~la~~l~~~~~~~~~-------------------~~~~~--~~LPrKfkI~isgc~~~c~~~~~~DIg~v 280 (595)
.|..+++|+++++.+|.++|.+++. .++.+ .+|||||||+||||+++|+++++|||||+
T Consensus 157 ~~~~~~~d~~~la~~l~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~LPrKfKiavsgc~~~c~~~~~~DiG~~ 236 (569)
T PRK13504 157 YESRLHAEAYEWAKKISDHLLPRTRAYAEIWLDGEKVATFSGTEEEPIYGKTYLPRKFKIAVAVPPDNDVDVYANDLGFV 236 (569)
T ss_pred ccccchHHHHHHHHHHHHHhccccchhHHhhhcCcccccccccccCcccccCCCCCceEEEEEcCCccccCceecceEEE
Confidence 8888999999999999998864321 12332 47999999999999999999999999999
Q ss_pred eEeecCc-eeEEEEEcCcCCCcc------ccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChH
Q 047572 281 PATKDGR-FGFNLLVGGFFSPKR------CAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIE 353 (595)
Q Consensus 281 ~~~~~g~-~gf~v~vGG~~g~~~------~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e 353 (595)
++.++|+ .||+|+|||++|+++ +..+..+ .||++|++++++++|+++|+++|+|.+|+++||+|+|++||++
T Consensus 237 ~~~~~g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l-~~v~~e~v~~~~~ai~~~~~~~G~r~~r~~aRlk~lv~~~G~e 315 (569)
T PRK13504 237 AIAENGKLVGFNVLVGGGMGMTHGDKETYPRLADEL-GYVPPEDVLDVAEAVVTTQRDYGNRTDRKNARLKYTLERVGLD 315 (569)
T ss_pred EEecCCcEEEEEEEEEccccCCCCCCCCCCcccccc-CccCHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHhHH
Confidence 9987775 699999999999652 2445666 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCCchhhhcccCCCCccceeecccCCeEEEEEEcCCcccCHH----HHHHHHHHHHHhCCCeE
Q 047572 354 GFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQAD----DMDELARLADAYGSGEL 429 (595)
Q Consensus 354 ~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~----ql~~La~iA~~yg~g~i 429 (595)
+|+++|+++++ +.+++..+. ..+...+|+||++|+ +|+|+|++++|+|+|+++ +|+.||+||++|| ++|
T Consensus 316 ~f~~~v~~~~~-~~~~~~~~~----~~~~~~~~~G~~~q~-~G~~~v~v~vp~Grl~~~~~~~~l~~La~iA~~yg-~~i 388 (569)
T PRK13504 316 WFKAEVERRAG-KKLEPARPY----EFTGRGDRLGWVEGI-DGKWHLTLFIENGRIKDYPGRPLKTGLREIAKIHK-GDF 388 (569)
T ss_pred HHHHHHHHHhc-CccCCCCCC----CccCccceeEEEecC-CCcEEEEEEecCEEecCCCcHHHHHHHHHHHHHhC-CEE
Confidence 99999999997 666654322 225567899999997 799999999999999999 9999999999998 899
Q ss_pred EEcCCCceEeeccChhhHHHHHHhhhcCCCCCC--CCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhh---cC-
Q 047572 430 RLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQ--PSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLV---DV- 503 (595)
Q Consensus 430 rlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~--~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~---~l- 503 (595)
|||+||||+|+||+.++++++.+.+...++... +++.+++++||||+++|++|++||+.++..|+++|+..+ .+
T Consensus 389 rlT~~Qnl~l~~i~~~~~~~l~~~L~~~gl~~~~~~~~~~~~ivAC~G~~~C~~a~~~t~~~a~~l~~~l~~~~~~~~l~ 468 (569)
T PRK13504 389 RLTANQNLIIANVPPSDKAKIEALLREYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLAKHGLS 468 (569)
T ss_pred EEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCCceeceeecCCcccccchhhhHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999988877777543 378899999999999999999999999999999888754 46
Q ss_pred CCCceEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHH
Q 047572 504 TKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHF 583 (595)
Q Consensus 504 p~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~ 583 (595)
|.+++||||||||+|++|+++||||+|.. .++|+||+||+.+ ++++++.+...|+.++++++++.++. +|
T Consensus 469 ~~~i~I~vSGCpn~Ca~~~iaDIG~vG~~--------~~~y~i~lGG~~~-~~~~~~~~~~~v~~~~v~~~l~~ll~-~y 538 (569)
T PRK13504 469 DEHIVIRMTGCPNGCARPYLAEIGLVGKA--------PGRYNLYLGGSFN-GTRLPKMYRENITEEEILATLDPLLG-RW 538 (569)
T ss_pred CCceEEEEeCCcccccccccCcEEEEecC--------CCeEEEEECCCCC-CCccchHhhcCCCHHHHHHHHHHHHH-HH
Confidence 89999999999999999999999999964 2579999999995 57999999999999999999999885 66
Q ss_pred HhH
Q 047572 584 GAV 586 (595)
Q Consensus 584 ~~~ 586 (595)
.+.
T Consensus 539 ~~~ 541 (569)
T PRK13504 539 AKE 541 (569)
T ss_pred HHh
Confidence 653
No 7
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=4.2e-98 Score=832.72 Aligned_cols=477 Identities=24% Similarity=0.404 Sum_probs=413.4
Q ss_pred hhhhcccCCcccccccchHHHHhhhhhhcccccCCchhHHHHHhhcccceecccC------------CCeEEEEEecCCC
Q 047572 81 EKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKHH------------YGRFMMRLKLPNG 148 (595)
Q Consensus 81 E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~~~~~~------------~~~fmvRvripgG 148 (595)
|+||.+|+||+..|. ++|++.++ ++++++|+. +|||+|+|+|++++ .+.||||||+|+|
T Consensus 1 e~~k~~~~~l~~~~~---~~~~~~~~-----~~~~~~~~~-~lk~~G~y~q~~~~~~~~~~~~~~~~~~~fmvRvripgG 71 (541)
T TIGR02041 1 ERIKEESNYLRGTLL---ESLADPLT-----GGFSGDDFQ-LIKFHGMYQQDDRDLRAERAEQKLEPAYQFMLRCRLPGG 71 (541)
T ss_pred CcchhccccchhHHH---HHHhhhhh-----cCCCHHHHH-HHHHheeeeeccccchhhhcccccCCcceeEEEEecCCc
Confidence 899999999976543 45776653 456688884 89999999986432 2379999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCcc
Q 047572 149 VTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIV 228 (595)
Q Consensus 149 ~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~ 228 (595)
+||++||++||+||++|| +|++|||||||||||||+.+++++++++|.++||+|.++|||++|||+ |+..++|.....
T Consensus 72 ~lt~~Ql~~la~ia~~yg-~g~i~lTtRQniQl~gI~~~~l~~v~~~L~~~GL~t~~a~gd~~RnV~-c~~~p~~~~~~~ 149 (541)
T TIGR02041 72 VITPKQWLAIDKFAREYG-NGSIRLTTRQTFQFHGILKRNLKAVHQAIHSAGLDSIATCGDVNRNVL-CTSNPYESELHQ 149 (541)
T ss_pred EECHHHHHHHHHHHHHhC-CCeEEEecccceEEcCCChhHHHHHHHHHHHcCCCccccCCCCCCcee-CCCCcccCCCHH
Confidence 999999999999999999 599999999999999999999999999999999999999999999998 666677887888
Q ss_pred ChHHHHHHHHHHHHhccC-----------------CCCC--ccCCCCceEEEEecCCCCCCcCccCceEEEeEeecCc-e
Q 047572 229 DTRPYTNLLSHFITANAQ-----------------GNPT--VTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGR-F 288 (595)
Q Consensus 229 dt~~la~~l~~~~~~~~~-----------------~~~~--~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~~~g~-~ 288 (595)
|+.++|++|.++|..+.. .++. +.+|||||||+|+||+++|.++.+|||||+++.++|+ .
T Consensus 150 e~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPrKfKi~isg~~~~~~~~~~~DiG~~a~~~~g~~~ 229 (541)
T TIGR02041 150 EAYEWAKKISEHLLPRTRAYHEIWLDEKKVAGTEEVEPIYGPTYLPRKFKTGVVIPPINDVDVYANDLGFVAIADNGKLI 229 (541)
T ss_pred HHHHHHHHHHHHhccCchhHHHHhhhcccccCCcccCccccccCCCCCcEEEEECCCCccccccccceEEEEEEeCCcEE
Confidence 999999999887654311 1233 3579999999999999999999999999999988765 6
Q ss_pred eEEEEEcCcCCCc------cccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHHhh
Q 047572 289 GFNLLVGGFFSPK------RCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKR 362 (595)
Q Consensus 289 gf~v~vGG~~g~~------~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~~~ 362 (595)
||+|+|||++|.+ .+..+..+. ||++|++++++++|+++|+++|+|.+|+|+||+|+|++||+++|+++|+++
T Consensus 230 Gf~v~vGGg~g~~~~~~~~~p~~a~~l~-~v~~e~v~~~~~ai~~~~~~~g~r~~r~~aRlk~li~~~G~e~f~~~v~~~ 308 (541)
T TIGR02041 230 GFNVLIGGGLGMTHGNKATYPRLANEIG-FIPPEHTLAVAEAIVTTQRDFGNRTDRKNARTKYTIDRMGLDTFKAEVERR 308 (541)
T ss_pred EEEEEEeccccCCCCCcCCCCccccccC-CCCHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999853 134566775 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchhhhcccCCCCccceeecccCCeEEEEEEcCCcccCH----HHHHHHHHHHHHhCCCeEEEcCCCceE
Q 047572 363 MPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQA----DDMDELARLADAYGSGELRLTVEQNII 438 (595)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~i~vp~Grl~a----~ql~~La~iA~~yg~g~irlT~~Qni~ 438 (595)
++ +++.+..+.. .+...+++||++| ++|+|+|++++|+|+|++ .++..|+++|+ ||.++||||+||||+
T Consensus 309 ~~-~~l~~~~~~~----~~~~~~~~g~~~~-~~G~~~v~v~~p~G~l~~~~~~~~l~~la~iA~-~~~~~irlT~~Qnl~ 381 (541)
T TIGR02041 309 AG-ITLEPARPYV----FTHRGDRYGWVKG-IDGNWHLTLFIESGRIADYPDKPLMTGLREIAK-IHKGDFRITPNQNLI 381 (541)
T ss_pred hC-CCCCCCCCcc----ccccccccCeecC-CCCcEEEEEEecCceeecCccHHHHHHHHHHHH-hcCCeEEEeCCCCEE
Confidence 86 6665443222 2346689999987 589999999999999995 48999999997 457999999999999
Q ss_pred eeccChhhHHHHHHhhhcCCCCC-CCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhhc----CCCCceEeeec
Q 047572 439 IPNVDNSKLEALLKEPLLEKFSP-QPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVD----VTKPVRMHWTG 513 (595)
Q Consensus 439 l~~I~~~~v~~l~~el~~~g~~~-~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~----lp~~~kI~iSG 513 (595)
|+||++++++++.+.+...|+.+ .+++.+++++||||+++|++|++||+.++..|+++|++.+. .|.+++|||||
T Consensus 382 l~~v~~~~~~~l~~~l~~~gl~~~~~~~~~~~vvAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~~~~~~~~~~~~I~iSG 461 (541)
T TIGR02041 382 IANVPEGGKAKIEALARQYGLIDGKVTALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNIMEKHGLADEEIVLRMTG 461 (541)
T ss_pred EcCCCHHHHHHHHHHHHHcCCCCCCCCceeeccEECCCccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEec
Confidence 99999998887777666677766 56788999999999999999999999999999998887652 36889999999
Q ss_pred CCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHHhH
Q 047572 514 CPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAV 586 (595)
Q Consensus 514 Cpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~~ 586 (595)
|||+|++|+++||||+|.. .++|+||+||+.+ ++++|+.+...|+.++++++|+.++ ++|.+.
T Consensus 462 Cpn~Ca~~~~adIG~~G~~--------~~~y~l~lGG~~~-~~~~g~~~~~~v~~~~v~~~v~~ll-~~y~~~ 524 (541)
T TIGR02041 462 CPNGCGRPYLAEIGLVGKA--------PGRYNLMLGGNRR-GQRLPRLYRENITEPEILAELDELL-GRYAAE 524 (541)
T ss_pred CCccccccccCcEEEEEec--------cceEEEEECCCCC-CCchhHHHHcCCCHHHHHHHHHHHH-HHHHHh
Confidence 9999999999999999964 1469999999974 7899999999999999999999977 577764
No 8
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-98 Score=817.41 Aligned_cols=485 Identities=35% Similarity=0.620 Sum_probs=437.0
Q ss_pred CCCChhhhhhcccCCcccccccchHHHHhhhhhhcccccCCchhHHHHHhhcccceecccCCCeEEEEEecCCCccCHHH
Q 047572 75 KGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQ 154 (595)
Q Consensus 75 ~~~~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~~~~~~~~~fmvRvripgG~lt~~Q 154 (595)
.+++ +|++|.+++.++..+ .+.... ..+..++++++..++||+|+|.| ..++.||+|+|+|+|.+|++|
T Consensus 5 ~~~~-~e~~k~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~G~y~q--~~~~~~MlRvriPgG~ls~~q 73 (510)
T COG0155 5 DPLD-NERLKAESNFLRGTI----EDQLSD----RLSGGLCEDDFRPLLKFDGLYLQ--EPDHAFMLRVRIPGGILSPKQ 73 (510)
T ss_pred CCcC-HHHHhhhhhhhHHHH----HHHhhh----ccccCCCHHHHHHHHhhcceeec--ccccceeEEEecCCCccCHHH
Confidence 3455 999999999666654 333221 12467889999888999999987 457899999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHHH
Q 047572 155 TRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYT 234 (595)
Q Consensus 155 lr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la 234 (595)
|++|+++|++||+ |+++||||||||||||.++|++++++.|+++||.++++|||++|||+++|++|.+++++.|+++++
T Consensus 74 ~r~l~~iA~~yg~-g~~~iTtRQniQ~hgI~~~d~~~i~~~l~~vgl~ti~~~gd~~Rnv~~~P~ag~~~~ei~D~r~~~ 152 (510)
T COG0155 74 LRALADIARRYGR-GTIELTTRQNIQFHGIRKKDVPEILAELASVGLHTIATAGDVARNVTGDPLAGLDADEIADPRPLA 152 (510)
T ss_pred HHHHHHHHHHhCC-CeEEEeecccceecccccccHHHHHHHHHHcCCcchhhccccccceecCcccccchhhcccchhHH
Confidence 9999999999995 999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEeEee-cCceeEEEEEcCcCCCccccccccccccC
Q 047572 235 NLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATK-DGRFGFNLLVGGFFSPKRCAEAIPLDAWV 313 (595)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~~-~g~~gf~v~vGG~~g~~~~~~~~~l~~~v 313 (595)
+.+..++.. .+++.+|||||||+|+||+++|.+.++|||||+++.+ ++..||+|+|||++|.+++..+..+..||
T Consensus 153 ~~~~~~l~~----~~~~~~LPRKFkiav~g~~~~~v~~~~~Di~~~a~~~~~~~~Gf~v~VGGglg~~~~~~~~~~~~~v 228 (510)
T COG0155 153 EILRIWLDG----EKGFAYLPRKFKIAVDGGPDNDVDVLINDIGFVAIKENDGLLGFNVLVGGGLGRTHPKTAPRLAEFV 228 (510)
T ss_pred HHHHHHhcC----ccchhcCCcceEEEEecCcccchhhhccceeEEEecccCCccceEEEEccccccCCcchhhHHhhcc
Confidence 887777653 6678999999999999999999999999999999996 66799999999999987556677788999
Q ss_pred ChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHHhhCCCCCCCCCCCchhhhcccCCCCccceeecc
Q 047572 314 AADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQK 393 (595)
Q Consensus 314 ~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk 393 (595)
+++++++++++|+++|+++|+|.||+++|+||++++||+|+|+++|+++++ .++.+..+. ..+.+.+|+||++|+
T Consensus 229 ~~~~~~~~~~aiv~~~~d~G~R~nr~~aR~k~lv~~~G~E~f~~~ve~~~g-~~~~~~~~~----~~~~~~d~~Gw~~~~ 303 (510)
T COG0155 229 PPEDVLEVVEAIVRVYRDYGRRANRKKARLKYLVEALGVEKFRREVEPRLG-KPFEPARPR----EFTGNGDHIGWVPQK 303 (510)
T ss_pred CHHHHHHHHHHHHHHHHhcchhhhhhhhhHHHHHHHhChHHHHHHHHHhhC-cccCccccc----cccCCCCceeEEEcC
Confidence 999999999999999999999999999999999999999999999999998 777766533 347789999999998
Q ss_pred cCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCCCCCCccceeec
Q 047572 394 QEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVAC 473 (595)
Q Consensus 394 ~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~~~~~r~v~AC 473 (595)
+|+|++++.+|+|++++..+..|++.+++++.++||||+||||+|+||+.++++.+++.+...|+.+.+++++++++||
T Consensus 304 -~g~~~~g~~v~~Grl~~~~~~~l~~~~~~~~~~eiRlT~~QnLii~~v~~~~~~~i~~~l~~~Gl~t~~~~l~~~~~AC 382 (510)
T COG0155 304 -DGLWHLGLAVPNGRLKAEGLIPLATEAEEIGFGEIRLTPNQNLIIPNVPEAELEAILRILAALGLVTAPSSLRRNSIAC 382 (510)
T ss_pred -CCcEEEEEecceeeecCccchHHHHHHHHHhhccEEeccCcceEecCCCHHHHHHHHHHHHHcCCCCCCcchhhhcccC
Confidence 8999999999999999999999999999999999999999999999999999999999888889988889999999999
Q ss_pred CCccccchhhhHHHHHHHHHHHHHHhhhcCCC-CceEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcC
Q 047572 474 TGNQFCGQAIIETKARALKVTKEVERLVDVTK-PVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRI 552 (595)
Q Consensus 474 ~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~-~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~ 552 (595)
+|.|+|++|++||++++..|.++|++.+.... +++||||||||+|++|++++|||+|... .+|+||+||+.
T Consensus 383 ~G~p~C~lA~aet~~~a~~i~~~l~~~~~~~~~~i~i~isGCpn~Ca~~~~a~Igl~G~~~--------~~y~v~lGG~~ 454 (510)
T COG0155 383 VGLPTCALALAETERDAPRIIARLEDLLDKHGLPITLHISGCPNGCGRPHLAEIGLVGKAK--------GGYQVYLGGGA 454 (510)
T ss_pred CCCCchhhhHhhHHHHHHHHHHHHHhhhcccCCceeEEeccCcchhcCcccCceeEeeccC--------cceEEEecCCC
Confidence 99999999999999999999999998765433 8999999999999999999999999852 45999999943
Q ss_pred CCCCcccccccCCCCccCHHHHHHHHHHHHHHhHhhcccccC
Q 047572 553 GSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLREREEAE 594 (595)
Q Consensus 553 g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~~~~~r~~~~ 594 (595)
.+++++++|...++.+++.++++.++. +|. ++|.++|
T Consensus 455 -~~~~~~~~~~~~~~~~~i~~~~~~l~~-~~~---~~R~~gE 491 (510)
T COG0155 455 -DGTRGGKLYGENVPAEEILDAIDRLIG-RYA---KERHEGE 491 (510)
T ss_pred -CCCccceeecCCCCHHHHHHHHHHHHH-HHH---hccCCCc
Confidence 467899999999999999999999884 443 3666665
No 9
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-100 Score=786.77 Aligned_cols=560 Identities=41% Similarity=0.620 Sum_probs=465.3
Q ss_pred CCccccccCCCCCCCccccCCCCCccceeeccCCCcCCCCcCCCccccccccCccccccCceeeeccccc----------
Q 047572 5 SSSFSVRFASPLLPSPAAATSASPKTWRVHATTPAVAPVTTTSAPEVDAERLEPRVEERDGYFVLKEKFR---------- 74 (595)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------- 74 (595)
|-+||-.|..|... .+..++|.+.+.+......+|+..|++-.+++.+++|++.-.++...|.+..+
T Consensus 1 vfgfs~tf~~Pk~~---~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~~p~d~d~ 77 (638)
T KOG0560|consen 1 VFGFSDTFYWPKED---KSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGINPQDKDE 77 (638)
T ss_pred CccccccccCcccC---ccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCCCcccccc
Confidence 34677788888322 44555776554455555555554556677999999999988888776654433
Q ss_pred CCCChhhhhhcccCCcccccccchHHHHhhhhhhcccccCCchhHHHHHhhcccceeccc--CCCe---EEEEEecCCCc
Q 047572 75 KGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKH--HYGR---FMMRLKLPNGV 149 (595)
Q Consensus 75 ~~~~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~~~~~--~~~~---fmvRvripgG~ 149 (595)
.|..++|-||.+++.+++.|.+ ++++.. ...+.+.|. ++.||||+|+|..| +.|. ||+|.|+|+|+
T Consensus 78 ~kr~~~e~ike~snflr~~ise---elldes-----~~~v~esdv-qL~KfhGiy~qddRd~r~gr~y~FM~R~klP~Gv 148 (638)
T KOG0560|consen 78 PKRETNEDIKENSNFLRGTISE---ELLDES-----KGSVDESDV-QLIKFHGIYHQDDRDIRYGRSYSFMMRAKLPNGV 148 (638)
T ss_pred CCcccHHHHHhhcchhhcccch---hhhhcC-----cCCcchhHH-HHHHHhhhhhhcchhhhcchhhhhhheecCCCCC
Confidence 4567788999999999999764 333321 122333343 34599999998433 3454 99999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCceec--CCCCCCCCCCc
Q 047572 150 TTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVG--NPLAGIDPEEI 227 (595)
Q Consensus 150 lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~--cP~ag~~~~~~ 227 (595)
.|++||+++++++++|| ||+++|||||++|+|||.+.|++.+++.+.+++|+|+++|||++|||++ .|..+.+...+
T Consensus 149 tt~qq~l~lddls~k~G-~gtlklTTRqtfQihGVlkknlk~~lrgi~kv~ltTL~a~gD~~RNv~~sa~P~~~kd~~qi 227 (638)
T KOG0560|consen 149 TTPQQWLALDDLSDKYG-NGTLKLTTRQTFQIHGVLKKNLKETLRGIAKVGLTTLGACGDVNRNVVGSANPINGKDHEQI 227 (638)
T ss_pred CCHHHHHHHHHHHHhhC-CceeeeeeeceeeeeeeehhhhHHHHHHHHHHHhhhhhhhccccccccccCCCccccCHHHH
Confidence 99999999999999999 5999999999999999999999999999999999999999999999997 78888888888
Q ss_pred cCh-HHH-------HHHHHHHHHhccC--------CCCCc--------cCCCCceEEEEecCCCCCCcCccCceEEEeEe
Q 047572 228 VDT-RPY-------TNLLSHFITANAQ--------GNPTV--------TNLPRKWNVCVVGSHDLYEHPHINDLAYMPAT 283 (595)
Q Consensus 228 ~dt-~~l-------a~~l~~~~~~~~~--------~~~~~--------~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~ 283 (595)
+|+ ..+ .....+......+ |++.+ ++||||||++|++.+++..++++||||++++.
T Consensus 228 ~dt~k~is~~llP~T~~y~e~w~e~~q~ve~rkv~Gn~~~d~epiygptyLPRKfkv~Vavp~dn~vd~~tnDva~v~i~ 307 (638)
T KOG0560|consen 228 VDTAKNISALLLPYTNLYHEFWTEGPQVVEARKVHGNADVDNEPIYGPTYLPRKFKVCVAVPPDNDVDVLTNDVALVAIN 307 (638)
T ss_pred HHHHHHHhhhhCCccchHHHHhhcCcHHhhhhccCCCcccccccccCcccCccceeEEEecCCCccccccccceeEEEEe
Confidence 887 322 2222222222111 44443 56999999999999999999999999999998
Q ss_pred e-cCceeEEEEEcCcCCCc-ccccccc----ccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHH
Q 047572 284 K-DGRFGFNLLVGGFFSPK-RCAEAIP----LDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRA 357 (595)
Q Consensus 284 ~-~g~~gf~v~vGG~~g~~-~~~~~~~----l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~ 357 (595)
+ ++..||||+|||+||++ ++..+.+ +.+||+.|+|+++++||+.+|||+|+|+||+++||||+|++||+|.|++
T Consensus 308 end~~~GfNv~VGGgmgtthr~ekt~prla~~~gyVptddIl~~vkaIli~qRd~G~R~nRk~aRmkylid~lGVe~Fr~ 387 (638)
T KOG0560|consen 308 ENDGVFGFNVLVGGGMGTTHRNEKTYPRLAELDGYVPTDDILPLVKAILIVQRDHGDRGNRKHARMKYLIDELGVEGFRT 387 (638)
T ss_pred ccCCceeeEEEeccccCCcccchhhcccccccccccchhhhHHHhhhheeeehhccCccchhhhhhhhhHHhhhhHHHHH
Confidence 4 55699999999999965 4455555 7789999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCCCCCCchhhhcccCCCCccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCce
Q 047572 358 EVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNI 437 (595)
Q Consensus 358 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni 437 (595)
+||+++| .+|++...+. .+.|++.+++|||+|+ +|.|++++++++||+.+.+++..+..+.+|+.+++|||++|||
T Consensus 388 ~VEe~~g-~KfE~~r~~~--~~~we~~dyfGwh~q~-~gl~f~glhVe~GRve~l~~ktglRev~e~~~~e~rlT~nQni 463 (638)
T KOG0560|consen 388 KVEEYMG-KKFEPGRSEP--NKQWERRDYFGWHKQE-EGLSFVGLHVENGRVEALDMKTGLREVAEYGSGELRLTVNQNI 463 (638)
T ss_pred HHHHHhc-ccCCcCcCCc--chhhccccccccccCC-CCceEEEEEccccccccchhhhHHHHHHHhhcceeeecccccE
Confidence 9999998 8999887443 5679999999999997 8999999999999999999999888888888999999999999
Q ss_pred EeeccChhhHHHHHHhhhcCCCC-CCCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhh---hcCCCC-ceEeee
Q 047572 438 IIPNVDNSKLEALLKEPLLEKFS-PQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERL---VDVTKP-VRMHWT 512 (595)
Q Consensus 438 ~l~~I~~~~v~~l~~el~~~g~~-~~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~---~~lp~~-~kI~iS 512 (595)
+|+||..+..+.|++++...++. +..+.++..++||+|+|+|++|++|++..+++|..++++. ..+|++ +.||||
T Consensus 464 ii~nv~te~~~~i~~~la~~~l~npefs~L~~ss~AC~g~p~CglAi~Eser~lpkii~~ve~~~e~vgl~~dsIvmr~T 543 (638)
T KOG0560|consen 464 IIPNVETEKTEAILQELALYKLDNPEFSGLRLSSVACVGLPTCGLAIAESERRLPKIITEVERMFEEVGLPRDSIVMRMT 543 (638)
T ss_pred EecccchhhhHHHHHHHHHhccCCcchhhhhhhhhcccCCCcchhHHHHHhhchhHHHHHHHHHHHHhCCCCCceEEEec
Confidence 99999999999999998765554 5667799999999999999999999999999999999874 357887 999999
Q ss_pred cCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHHhHhhcccc
Q 047572 513 GCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLREREE 592 (595)
Q Consensus 513 GCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~~~~~r~~ 592 (595)
||||+|++||++||||+|.. ...|++++||+.- +.++++++...|...+|.++++.++ ..++-+|+.
T Consensus 544 GCPNgCsrp~vaeig~vGka--------pnty~~~lgG~p~-~~~l~k~~~~~vkd~ei~~i~kpl~----k~~~Lere~ 610 (638)
T KOG0560|consen 544 GCPNGCSRPWVAEIGLVGKA--------PNTYNLMLGGGPV-GQRLNKLYGRIVKDSEIGEIYKPLF----KRYALEREV 610 (638)
T ss_pred cCCCCCCcchhhheeecccC--------CcceeeecCCcch-HHHHHHHHhccccHHHHHHHHhhhh----hhhhhhHHH
Confidence 99999999999999999942 3579999999994 5799999999999999999888866 444455655
Q ss_pred cC
Q 047572 593 AE 594 (595)
Q Consensus 593 ~~ 594 (595)
+|
T Consensus 611 ~E 612 (638)
T KOG0560|consen 611 GE 612 (638)
T ss_pred HH
Confidence 54
No 10
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=100.00 E-value=2e-82 Score=682.47 Aligned_cols=380 Identities=28% Similarity=0.405 Sum_probs=335.1
Q ss_pred ccceecccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCC
Q 047572 127 GLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQS 206 (595)
Q Consensus 127 G~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a 206 (595)
|++ +..+..+.||+|||+|+|+||++||++||++|++|| +|++|||||||||||||+.+ ++++++.|.++||++.++
T Consensus 7 g~~-~~~~~~dg~mvRvr~p~G~lt~~ql~~la~ia~~yg-~g~i~lTtRQniql~gv~~~-~~~l~~~l~~~GL~~~~~ 83 (390)
T TIGR02435 7 GLL-RPMQAGDGLLVRVRLPGGRLTPAQAIGLADLAERLG-NGIIEVTARGNLQLRGLTAD-HDALSQALLAAGLGAAGA 83 (390)
T ss_pred ccc-cccccCCeeEEEEecCCCccCHHHHHHHHHHHHHhC-CCeEEEEccccceecccCcc-HHHHHHHHHHCCCCCccc
Confidence 555 334344458999999999999999999999999999 59999999999999999999 999999999999999999
Q ss_pred CCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEeEeecC
Q 047572 207 GMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDG 286 (595)
Q Consensus 207 ~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~~~g 286 (595)
|||.+|||++||+++.|+.+++||++++++|.++|.+ ++.+.+||+||||+||||+++|.++++|||||+++.+++
T Consensus 84 ~g~~~Rnv~~cp~~g~~~~~~~dt~~la~~l~~~l~~----~~~~~~LPrKfki~vsgc~~~c~~~~~~DIG~~~~~~~~ 159 (390)
T TIGR02435 84 AADDIRNIEVSPLAGIDPGEIADTRPLAAELRAALEN----ERALLELPPKFSVAIDGGGRLVLLGDTADVRLQALTTGA 159 (390)
T ss_pred cCCcccccccCccccCCCccccchHHHHHHHHHHHhc----ChhhhcCCCceEEEEECCCccccCCCCCCEEEEEEecCC
Confidence 9999999999999999999999999999999999875 667789999999999999999999999999999988766
Q ss_pred ceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHHhhCCCC
Q 047572 287 RFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQ 366 (595)
Q Consensus 287 ~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~~~~~~~ 366 (595)
..||+|++||..+... .+ .+|+++++++++++++++|+++|+ ++||+|++++||+|+|+++|++..
T Consensus 160 ~~gf~v~vGG~~~~~~-----~~-~~v~~~~v~~~v~av~~~~~~~g~-----~aR~k~li~~~g~e~~~~~v~~~~--- 225 (390)
T TIGR02435 160 GVAWVVSLAGISTSAR-----SL-VTVAPDAAVPVAVALLRVFVELGG-----AARGRDLDDAFLFALALELVEDSR--- 225 (390)
T ss_pred EEEEEEEEecCCCCCC-----ce-EEeCHHHHHHHHHHHHHHHHHhCc-----ccHHHHHHHHhHHHHHHHHHHhcc---
Confidence 6799999999554322 22 689999999999999999999986 589999999999999999999843
Q ss_pred CCCCCC-CchhhhcccCCCCccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChh
Q 047572 367 ELDRGS-SEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNS 445 (595)
Q Consensus 367 ~l~~~~-~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~ 445 (595)
.+.+.. ....+.+.+.+.++.||++|++.+ |+|++++|+|+|++++|+.|+++|++||.++||||+||||+|++|+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~G~~~q~~~~-~~v~~~~p~G~i~~~~l~~la~ia~~~g~~~irlT~~Q~l~i~~i~~~ 304 (390)
T TIGR02435 226 PLIPDAAEGEAPRPAVDAAAPLGLHPQGDAG-VTLGAGLALGQLTAAQLRGLAQLAQALGDGDLRLTPWRALLVLGLPPE 304 (390)
T ss_pred ccCCCccccccccCcccccCCCceeecCCCC-eEEEEecCccccCHHHHHHHHHHHHHhCCCeEEEcCCcceEEcCCCHH
Confidence 222111 000011123345789999999767 999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCCCCCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCCCCCcccccCc
Q 047572 446 KLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVAD 525 (595)
Q Consensus 446 ~v~~l~~el~~~g~~~~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCpn~Ca~~~~aD 525 (595)
+++++++++...++...+.+.+.+++||+|+++|+++++||+.++.+|.++|... + +++||||||||+|++|+++|
T Consensus 305 ~~~~~~~~l~~~gl~~~~~~~~~~v~aC~G~~~C~~~~~~t~~~a~~l~~~~~~~--~--~~~i~vSGC~n~C~~~~~ad 380 (390)
T TIGR02435 305 RADAAQRALAALGLVTSASDPRARIIACTGAPGCASALADTRADAEALAAYCEPT--A--PITVHLSGCAKGCAHPGPAA 380 (390)
T ss_pred HHHHHHHHHHHCCCCcCCCCCeeeEEECCCccccccchhhHHHHHHHHHHHhccc--C--CcEEEEeCCcccccCCCCCC
Confidence 9999999998888887666667889999999999999999999999999988643 2 39999999999999999999
Q ss_pred EEEEeEe
Q 047572 526 IGFMGCM 532 (595)
Q Consensus 526 IGlvG~~ 532 (595)
|||+|..
T Consensus 381 iG~~G~~ 387 (390)
T TIGR02435 381 ITLVAAG 387 (390)
T ss_pred EEEEecC
Confidence 9999964
No 11
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=100.00 E-value=2.6e-43 Score=370.27 Aligned_cols=230 Identities=17% Similarity=0.210 Sum_probs=201.2
Q ss_pred HHhhcc------cceecccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHH
Q 047572 122 RLKWLG------LFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKG 195 (595)
Q Consensus 122 rlk~~G------~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~ 195 (595)
++|||| +++..++++++||||+++|+ .+|++||+.||++|++||. |.+|||||||||||||+.+++++++++
T Consensus 8 ~~~~~~~~~~gv~~~~~~~~~~~~mvRv~ip~-~lt~eqLr~LAdiaekyg~-g~i~lTtrQnI~l~~I~~edl~~i~~~ 85 (341)
T TIGR02066 8 KWKYHEVVKPGVIKHVAESGDVIYTVKAGTPR-LLSVDTLRKLCDIADKYSD-GYLRWTIRNNVEFLVSDESKIQPLIDE 85 (341)
T ss_pred ceEEcccCCCcEEEEECCCCCcEEEEEeCCCc-ccCHHHHHHHHHHHHHhCC-CeEEEeccCCEEEecCCHHHHHHHHHH
Confidence 799999 77766666889999999999 9999999999999999995 999999999999999999999999999
Q ss_pred HHHcCCcccCCCCCCcC-ceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCcc
Q 047572 196 LAQVGLTSLQSGMDNVR-NPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHI 274 (595)
Q Consensus 196 L~~~GL~t~~a~gd~~R-nI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~ 274 (595)
|.++||++ +++|+.+| ||++||++..|+.+++|+.+++..|.+.|...+. ..+||+||||+||||+++|+++++
T Consensus 86 L~~~Gl~~-~~~G~~vrrni~aC~G~~~C~~a~~dt~~l~~~l~~~l~~~~~----~~~lP~KfKI~vSGC~~~C~~~~~ 160 (341)
T TIGR02066 86 LEEVGFPV-GGTGDAVKGNIVHTQGWLHCHIPAIDASGIVKAVMDELYEYFT----DHKLPAMVRISLSCCANMCGGVHA 160 (341)
T ss_pred HHhccCCC-CCCCCccccccccCcCCCCCCcchhchHHHHHHHHHHHHHHHh----cccccccceeccccccccccchhh
Confidence 99999987 56678888 9999999999999999999998877766654332 247999999999999999999999
Q ss_pred CceEEEeEee--------------------------------c------------------------------C-ceeEE
Q 047572 275 NDLAYMPATK--------------------------------D------------------------------G-RFGFN 291 (595)
Q Consensus 275 ~DIg~v~~~~--------------------------------~------------------------------g-~~gf~ 291 (595)
+||||+++.. + + +.||.
T Consensus 161 ~Dig~~g~~~~~p~~~~~~~~~~c~~~~Cv~~CP~~Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~~~~G~~ 240 (341)
T TIGR02066 161 SDIAIVGIHRKPPKINHEAVRNVCEIPSVVAACPTGALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAA 240 (341)
T ss_pred ccccccccccCCcEEcHHHHHhhcCCCceEeeCchhhceecccCCCCceeeccccCCcCCchHHhCchhhccCCCCCeEE
Confidence 9999998531 1 1 36999
Q ss_pred EEEcCcCCC--ccccccccccccCCh-----hcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHHhh
Q 047572 292 LLVGGFFSP--KRCAEAIPLDAWVAA-----DDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKR 362 (595)
Q Consensus 292 v~vGG~~g~--~~~~~~~~l~~~v~~-----eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~~~ 362 (595)
|++||++|. .++..|..+..|++. +++++++++|+++|+++|.+. +||+++|+|+|+++|+++|...
T Consensus 241 v~vGG~~g~~~~~p~lg~~~~~~~~~~~~~~e~~~~~i~~i~~~~~~~~~~~----eR~g~~i~RvG~~~f~~~v~~~ 314 (341)
T TIGR02066 241 IWVGGKLSNARVMPELSKVVVPWIPNNPPRWPELVAYVKKILEAWKANAKKH----ERLIEWVERIGWERFFELVGLP 314 (341)
T ss_pred EEEccccCccccCCcccceecccccCCCcchHHHHHHHHHHHHHHHHcCcCC----ccHHHHHHHHhHHHHHHHHCCC
Confidence 999998873 334667777778876 699999999999999998754 5999999999999999999753
No 12
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=100.00 E-value=4.9e-40 Score=332.40 Aligned_cols=223 Identities=26% Similarity=0.439 Sum_probs=201.8
Q ss_pred cccceecccCCCeEEEEEecCC-CccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCccc
Q 047572 126 LGLFHRRKHHYGRFMMRLKLPN-GVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSL 204 (595)
Q Consensus 126 ~G~y~~~~~~~~~fmvRvripg-G~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~ 204 (595)
.|+..|+ ++.|++||++|. |.+++++|+.|++||++|| +|.+|||+||+++|++|+.++++++.++|+++||.+
T Consensus 20 ~Gvi~r~---~~t~~vRv~~ppgg~l~~e~Lr~i~diAekyG-~G~i~iT~rqg~ei~~i~~e~~~~v~~~L~~iG~~~- 94 (317)
T COG2221 20 YGVIKRR---DGTYTVRVRTPPGGFLSAETLRKIADIAEKYG-DGLIHITSRQGLEIPGISPEDADDVVEELREIGLPV- 94 (317)
T ss_pred Cceeeec---cCcEEEEEecCCCCccCHHHHHHHHHHHHHhC-CCeEEEEecCceEeccCCHHHHHHHHHHHHHcCCCC-
Confidence 3555543 567999999987 8999999999999999999 599999999999999999999999999999999965
Q ss_pred CCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEeEee
Q 047572 205 QSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATK 284 (595)
Q Consensus 205 ~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~~ 284 (595)
++.|+.+|||++||+...|..+++||..|+++|++.|.+ ..+|.||||+|||||++|+.++.+||||+++.+
T Consensus 95 G~~G~~vr~i~aC~G~~~C~~a~~Dt~~la~~l~e~f~~--------~~~P~KfKI~vsGCPn~C~r~~~~DigivGv~~ 166 (317)
T COG2221 95 GSTGPAVRAIVACPGPRTCETALYDTTELARRLEEEFLE--------VPVPYKFKIAVSGCPNDCTRPQAHDIGIVGVWK 166 (317)
T ss_pred CCcchhhhhhhcCcCcccccccccChHHHHHHHHHHhhc--------CCCCceEEEEeecCCcccccccccceeEEEeec
Confidence 567899999999999999999999999999999999875 479999999999999999999999999999985
Q ss_pred ----------------------------------------------------c-CceeEEEEEcCcCCCccccccccccc
Q 047572 285 ----------------------------------------------------D-GRFGFNLLVGGFFSPKRCAEAIPLDA 311 (595)
Q Consensus 285 ----------------------------------------------------~-g~~gf~v~vGG~~g~~~~~~~~~l~~ 311 (595)
+ .+.|+.|+|||..|+.....+.++..
T Consensus 167 P~~~~E~c~gc~~cv~~C~~gAI~~~~~~l~id~~~Ci~Cg~Ci~~Cp~~~~~~ek~g~~i~VGGk~Gr~~~r~g~~~~~ 246 (317)
T COG2221 167 PKVDEELCRGCGKCVKVCPTGAITWDGKKLKIDGSKCIGCGKCIRACPKAAFRGEKVGIAILVGGKTGRELGRVGKPLVP 246 (317)
T ss_pred CccCHHHhchhHhHHHhCCCCceeeccceEEEehhhccCccHHhhhCChhhcchhhccEEEEEccccCCccccccccccc
Confidence 0 13699999999999877788999999
Q ss_pred cCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHHhhCC
Q 047572 312 WVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMP 364 (595)
Q Consensus 312 ~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~~~~~ 364 (595)
+.++|++++++++++++|++++... .+ ||.++|++.|+++|++++...+.
T Consensus 247 ~~~~dei~~ii~~~~e~~~~~~~~~--~~-Rigd~I~r~G~~kF~e~i~~~~~ 296 (317)
T COG2221 247 VEDEDEIIDIIKKTIEVWREYAEKP--GE-RIGDFIDRVGFEKFLEEILREVK 296 (317)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccc--cc-hHHHHHHHHhHHHHHHHHHHhhc
Confidence 9999999999999999999998753 34 99999999999999999986553
No 13
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=6.3e-40 Score=381.60 Aligned_cols=217 Identities=18% Similarity=0.176 Sum_probs=199.4
Q ss_pred cccceecccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccC
Q 047572 126 LGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQ 205 (595)
Q Consensus 126 ~G~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~ 205 (595)
+.-|+...|++|+||||+|+|+|++|++||+.||++|++|| +.++||+||||||+||+.+++++++++|.++||.+.+
T Consensus 552 n~~~~~n~Qk~g~~~v~~~~p~G~lt~~ql~~ia~iA~kyg--~~~~iT~~Q~i~L~~i~~~~l~~v~~~L~~~Gl~~~~ 629 (847)
T PRK14989 552 NDNFLANIQKDGTYSVIPRSAGGEITPEGLMAVGRIAREFN--LYTKITGSQRIGLFGAQKDDLPEIWRQLIEAGFETGH 629 (847)
T ss_pred ccccccccccCCeEEEEEEcCCcEeCHHHHHHHHHHHHHHC--CcEEEcCCCceEeCCCCHHHHHHHHHHHHHCCCCcCC
Confidence 34455555568999999999999999999999999999999 3699999999999999999999999999999999998
Q ss_pred CCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEeEeec
Q 047572 206 SGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKD 285 (595)
Q Consensus 206 a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~~~ 285 (595)
++|+.+|||++||+++.|+.++.||.+++.+|.+.+.. ..+|+||||+||||+++|++++++||||++..+
T Consensus 630 ~~g~~vr~v~aC~G~~~C~~g~~dt~~la~~l~~~~~~--------~~~P~k~ki~vSGC~~~C~~~~i~DiG~i~~~~- 700 (847)
T PRK14989 630 AYAKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKG--------IRTPHKMKFGVSGCTRECAEAQGKDVGIIATEK- 700 (847)
T ss_pred CCCCCcCceeeCCCCCccccccccHHHHHHHHHHHhcc--------CCCCCceEEEEeCCcccccccccccEEEEEecC-
Confidence 89999999999999999999999999999999988753 468999999999999999999999999999764
Q ss_pred CceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhh--ChHHHHHHHHh
Q 047572 286 GRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDEL--GIEGFRAEVVK 361 (595)
Q Consensus 286 g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~--G~e~f~~~v~~ 361 (595)
||+||+||+.|.++ ..+..+..+++++++++++++++++|++++++.+ |+..|++|+ |++.|++.|.+
T Consensus 701 ---G~~v~vGG~~G~~~-~~g~~l~~~~~~~~v~~~i~~~l~~y~~~~~~~e----r~~~~~~r~~~g~~~~~~~~~~ 770 (847)
T PRK14989 701 ---GWNLYVCGNGGMKP-RHADLLAADLDRETLIKYLDRFMMFYIRTADKLQ----RTAVWLENLEGGIDYLKAVIID 770 (847)
T ss_pred ---ceEEEECCCCCCCC-cceeeecCCCCHHHHHHHHHHHHHHHHHhCcccc----cHHHHHHHhhchHHHHHHHHhc
Confidence 89999999998654 6677888899999999999999999999998765 999999999 99999998875
No 14
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1e-39 Score=379.38 Aligned_cols=208 Identities=20% Similarity=0.214 Sum_probs=194.0
Q ss_pred cCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCc
Q 047572 134 HHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRN 213 (595)
Q Consensus 134 ~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~Rn 213 (595)
+++|+||+|+|+|+|.+|++||+.|+++|++||. |+++||+||||||+||+++++++++++|.++||+ .++|+.+||
T Consensus 549 qk~g~~~v~~~~~~G~lt~~ql~~la~ia~~yg~-~~i~iT~~Q~i~l~gi~~~~l~~i~~~L~~~gl~--~~~g~~~r~ 625 (785)
T TIGR02374 549 QKDGTYSVIPRMYGGRTNPEQLRTIANIAEAYSI-PYVKITGGQRLDLFGAKKDDLPNIWKDLKMPGYE--HAYGKALRT 625 (785)
T ss_pred ccCCceEEEEecCCcccCHHHHHHHHHHHHHhCC-CeEEEcCCceEEECCCCHHHHHHHHHHHHhCCCC--CCCCCCccC
Confidence 3469999999999999999999999999999995 9999999999999999999999999999999996 778999999
Q ss_pred eecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEeEeecCceeEEEE
Q 047572 214 PVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLL 293 (595)
Q Consensus 214 I~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~~~g~~gf~v~ 293 (595)
|++||++..|..++.||.+++.+|.+.+.. ..+|+||||+||||+++|++++++||||++..+ ||+||
T Consensus 626 v~aC~G~~~C~~g~~ds~~la~~l~~~~~~--------~~~p~k~ki~vSGC~~~C~~~~~~DiG~i~~~~----g~~v~ 693 (785)
T TIGR02374 626 VKTCVGSQWCRYGNQDSVQLAIQLERRYEG--------LRTPHKIKIGVSGCERECAEAAGKDVGVIATEK----GWNLY 693 (785)
T ss_pred cccCCCccccCcchhhHHHHHHHHHHHhcc--------cCCCCceEEEEECCccccchhhhCcEEEEEecC----CeEEE
Confidence 999999999999999999999999888753 469999999999999999999999999999764 89999
Q ss_pred EcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHHh
Q 047572 294 VGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVK 361 (595)
Q Consensus 294 vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~~ 361 (595)
|||+.|.++ ..+..+..++++|++++++++++++|++++++.+ |+++|++++|+++|++.|++
T Consensus 694 vGG~~g~~~-~~a~~l~~~~~~e~v~~~i~~~l~~y~~~~~~~e----r~~~~i~r~G~~~~~~~~~~ 756 (785)
T TIGR02374 694 VGGNGGTHP-RHGDLLAVDEDEETLIGYIDRFLQYYRETADYLE----RTAPWLERLGIDHVREVLFE 756 (785)
T ss_pred ECCcCCCCC-cceeeecCCCCHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHhChHHHHHHHHh
Confidence 999988654 5678888899999999999999999999998765 89999999999999999986
No 15
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=100.00 E-value=3.6e-39 Score=337.76 Aligned_cols=229 Identities=18% Similarity=0.280 Sum_probs=200.6
Q ss_pred HHhhcccceecccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHc--
Q 047572 122 RLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQV-- 199 (595)
Q Consensus 122 rlk~~G~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~-- 199 (595)
.+|-.|++.| ++.|+||+||++|+|++|++||+.||++|++||. |++|+|||||||||||+.++++++++.|+++
T Consensus 6 ~~~~~~~~~~--~~~g~~~vrv~~p~G~lt~~qlr~la~ia~~yg~-g~~~~TtrQ~i~l~~i~~~~~~~v~~~L~~~~~ 82 (314)
T TIGR02912 6 ALKKNAFRVT--KVRGKTAIRVRVPGGILPAKYLSVLQNIAETYGN-GKVHITTRQGFEIPGIRFEDIDEVNKALQPIIE 82 (314)
T ss_pred HHhhCCeEEe--ecCCceEEEEEccceecCHHHHHHHHHHHHHhCC-CeEEEecccceEecCcCHHHHHHHHHHHHHHhh
Confidence 5787899976 4678999999999999999999999999999994 9999999999999999999999999999864
Q ss_pred CCc------ccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCc
Q 047572 200 GLT------SLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPH 273 (595)
Q Consensus 200 GL~------t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~ 273 (595)
||. ..+.+|+.+|||++||++++|+.+++|+.+++++|.+.+. .+|+||||+||||++.|.++.
T Consensus 83 gl~~~~~~~~~G~~g~~vR~i~aC~g~~~C~~~~~dt~~l~~~l~~~~~----------~~~~k~ki~iSGCp~~C~~~~ 152 (314)
T TIGR02912 83 GLEINQEDVQKGYSASGTRNITACIGNRVCPFANYDTTKFAKRIEKAVF----------PNDYHVKIALTGCPNDCAKAR 152 (314)
T ss_pred cccccccccccccccCCccceeeCCCCCCCCCCcccHHHHHHHHHHHhh----------cCCceEEEEEeCCCchhhHHH
Confidence 332 2345789999999999999999999999999999988774 258899999999999999999
Q ss_pred cCceEEEeEee---------------------------------------------------------cCceeEEEEEcC
Q 047572 274 INDLAYMPATK---------------------------------------------------------DGRFGFNLLVGG 296 (595)
Q Consensus 274 ~~DIg~v~~~~---------------------------------------------------------~g~~gf~v~vGG 296 (595)
++||||++... ....+|.+++||
T Consensus 153 ~~DiG~~g~~~~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~~~~id~~~C~~Cg~Cv~~CP~~Al~~~~~~~~~v~~gg 232 (314)
T TIGR02912 153 MHDFGIIGMTEPQYDADRCIGCGACVKVCKKKAVGALSFENYKVVRDHSKCIGCGECVLKCPTGAWTRSEEKYYKLRLMG 232 (314)
T ss_pred HhhcccccccCCceeCccCCcchHHHHhcChhhcCceeccCCeEEeCCCcCcCcchhhhhCCHhhcccCcCCcEEEEEcC
Confidence 99999987521 012369999999
Q ss_pred cCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCC-ccchhhHHHHHhhChHHHHHHHHhhC
Q 047572 297 FFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGN-RQKTRMMWLIDELGIEGFRAEVVKRM 363 (595)
Q Consensus 297 ~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~-R~kaRl~~li~~~G~e~f~~~v~~~~ 363 (595)
..|.+.+..+..+..+++.+++++++++++++|++|+.+.+ ++++||+++|+|+|+++|++++.+.+
T Consensus 233 ~~g~~~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~eR~~~~i~r~g~~~~~~~~~~~~ 300 (314)
T TIGR02912 233 RTGKKNPRLGEDFIKWVDEDSIVKIILNTYDYITEYIDKNAPGGKEHIGYIVDRTGYQEFKKWALKDV 300 (314)
T ss_pred ccCCCCcchhhhhhhhcCcchhHHHHHHHHHHHHHHHhccCCCccchHHHHHHHhhHHHHHHHHhhhc
Confidence 99975456777888899999999999999999999988766 57899999999999999999886544
No 16
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=100.00 E-value=3.4e-37 Score=328.98 Aligned_cols=226 Identities=19% Similarity=0.231 Sum_probs=194.2
Q ss_pred hcccceecccC-------CCeEEEEEecCCCc-cCHHHHHHHHHHHHHhCCCCeEEecC-CCceEEecCCCCCHHHHHHH
Q 047572 125 WLGLFHRRKHH-------YGRFMMRLKLPNGV-TTSEQTRYLASVIKKYGKDGCADVTT-RQNWQIRGVVLPDVPEILKG 195 (595)
Q Consensus 125 ~~G~y~~~~~~-------~~~fmvRvripgG~-lt~~Qlr~la~iA~~yG~~G~l~iTt-Rq~iql~gI~~~~l~~i~~~ 195 (595)
.-|+|.|-..+ .+.|||||++|+|. +|++||+.|++||++||. |.+++|+ ||||+|+||+.+++++++++
T Consensus 61 g~GVigr~~~~~~~~p~~~~~~tvRv~~P~G~~~tteqLR~LaDiaekYGs-G~~~~tgstqdIiL~gv~~e~le~i~~e 139 (402)
T TIGR02064 61 GGGVIGRYSDQGEKFPGVAEFHTVRVAQPSGKFYSTDYLRQLCDVWEKYGS-GLTNFHGQTGDIVFLGTQTPQLQEIFEE 139 (402)
T ss_pred CCEEEEEecCCcccCCCcCeEEEEEEecCCCCCCCHHHHHHHHHHHHHhCC-CEEEEeccccCEEEcCCCHHHHHHHHHH
Confidence 46777762222 37999999999998 699999999999999995 9999985 89999999999999999999
Q ss_pred HHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCc-c
Q 047572 196 LAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPH-I 274 (595)
Q Consensus 196 L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~-~ 274 (595)
|.++|++. +++|+++||+++||++..|..+++||.+++.+|.+.|.+. .....||+||||+||||+++|++++ +
T Consensus 140 L~~~G~dl-ggsG~~vRti~aC~G~~~C~~a~~DT~~l~~~L~~~~~~~----~~~~~lP~KfKI~vSGCpn~C~~~~~~ 214 (402)
T TIGR02064 140 LTNLGTDL-GGSGSNLRTPESCVGPARCEFACYDTLKACYELTMEYQDE----LHRPAFPYKFKFKFSGCPNDCVAAIAR 214 (402)
T ss_pred HhhcccCC-CCCCCCccceecCCCcccCCCcccccHHHHHHHHHHHHhh----hhhccCCccccccccccccccccceec
Confidence 99999964 7789999999999999999999999999999999987642 1224699999999999999999998 9
Q ss_pred CceEEEeEeec------------------------------------------------------------------Cce
Q 047572 275 NDLAYMPATKD------------------------------------------------------------------GRF 288 (595)
Q Consensus 275 ~DIg~v~~~~~------------------------------------------------------------------g~~ 288 (595)
+||||++.+.+ .+.
T Consensus 215 ~DIG~iG~~r~~~~id~~~~~~~~~~cg~~~~~~~~v~~Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~p~a~~~g~~~ 294 (402)
T TIGR02064 215 SDFAVIGTWKDDIKVDQEAVKAYIAGWGKFDIENEVVNRCPTKAISWDGSKELSIDNRECVRCMHCINKMPKALHPGDER 294 (402)
T ss_pred cCceeeccccCCccccHHHHHHHHhhccccccchhHhhcCCccccccCCCceEEEcchhcCcCccccccCcccccCCCCC
Confidence 99999996421 146
Q ss_pred eEEEEEcCcCCCc-cccccccccccC----ChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHH
Q 047572 289 GFNLLVGGFFSPK-RCAEAIPLDAWV----AADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVV 360 (595)
Q Consensus 289 gf~v~vGG~~g~~-~~~~~~~l~~~v----~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~ 360 (595)
||.|++||+.+.. .+..+..+..|+ +.+++.+++++|+++|+++|. .++||+++|+|+|+++|++++.
T Consensus 295 G~~ilvGGk~~~~~g~~lg~~~~~f~~~e~~~eei~~~i~~i~~~~~e~g~----~~ER~g~~i~R~G~~~f~~~i~ 367 (402)
T TIGR02064 295 GVTILIGGKAPILDGAQMGWVVVPFVEAEEPYDEIKELVEKIIDWWDEEGK----NRERIGETIKRLGLQKFLEVIG 367 (402)
T ss_pred eEEEEEccCCCCCCCCcccceecccccCCCCHHHHHHHHHHHHHHHHHhCC----ccccHHHHHHHhCHHHHHHHHC
Confidence 8999999998732 345666666777 557999999999999999985 3569999999999999999873
No 17
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=2.7e-36 Score=339.24 Aligned_cols=225 Identities=23% Similarity=0.270 Sum_probs=197.5
Q ss_pred HHhhcccceecccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCC
Q 047572 122 RLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGL 201 (595)
Q Consensus 122 rlk~~G~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL 201 (595)
+..+.|+|.| +++|.||||+++|+|+||++|++.|+++|++|| +|.||+|+||||||+||+.++++++++.|.+.||
T Consensus 360 ~~~~~Gv~~Q--kq~G~~~v~v~vp~Grlt~~ql~~LA~iA~~yg-~g~irlT~~Qni~l~~V~~~~~~~l~~~L~~~Gl 436 (593)
T PRK09567 360 RFAHVGVHPQ--KQPGLNWIGVVLPVGRLTTDQMRGLAKIAARYG-DGEIRLTVWQNLLISGVPDADVAAVEAAIEALGL 436 (593)
T ss_pred ccccceeecc--CCCCceEEEEECCCCccCHHHHHHHHHHHHHhC-CCEEEEeCCCCeEEcCCCHHHHHHHHHHHHHcCC
Confidence 5668899986 357899999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred cccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEe
Q 047572 202 TSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMP 281 (595)
Q Consensus 202 ~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~ 281 (595)
++..+ ...+++++|+++..|+.++.||.+++.+|.++|..+ + .||+||||+||||++.|++++++||||++
T Consensus 437 ~~~~~--~~r~~~vAC~G~~~C~~a~~dT~~~a~~l~~~l~~~------~-~l~~~ikI~vSGCpn~Ca~~~iaDIGfvG 507 (593)
T PRK09567 437 TTEAS--SIRAGLVACTGNAGCKFAAADTKGHALAIADYCEPR------V-ALDQPVNIHLTGCHHSCAQHYIGDIGLIG 507 (593)
T ss_pred CCCCc--ceeeccEecCCCCCCCccHhhHHHHHHHHHHHHHHh------c-CCCCCcEEEEECCCccccccccCCEEEEe
Confidence 87432 334469999999999999999999999999988752 2 68999999999999999999999999999
Q ss_pred Eee---c--CceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHH
Q 047572 282 ATK---D--GRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFR 356 (595)
Q Consensus 282 ~~~---~--g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~ 356 (595)
... + +..||+||+||++|... ..+..+..+|+.+++++++++++.+|+++..+ ..++|..+++|+|+++|+
T Consensus 508 ~~~~~~~g~~~~gy~v~lGG~~g~~~-~lg~~~~~~vp~eev~~~l~~ll~~y~~~r~~---~~E~f~~f~~R~g~e~l~ 583 (593)
T PRK09567 508 AKVAVSEGDTVEGYHIVVGGGFGEDA-AIGREVFRDVKAEDAPRLVERLLRAYLAHRQG---PDETFQAFTRRHDPEALR 583 (593)
T ss_pred eEeccCCCCccceEEEEECCCCCCCC-CcchHhhcCCCHHHHHHHHHHHHHHHHHhcCC---CCCcHHHHHHHcCcHHHH
Confidence 753 2 23699999999998643 56667778899999999999999999998652 134899999999999999
Q ss_pred HHHHhh
Q 047572 357 AEVVKR 362 (595)
Q Consensus 357 ~~v~~~ 362 (595)
+.+...
T Consensus 584 ~~l~~~ 589 (593)
T PRK09567 584 SLAEEQ 589 (593)
T ss_pred HHHhcc
Confidence 998754
No 18
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=1.6e-34 Score=321.05 Aligned_cols=199 Identities=18% Similarity=0.293 Sum_probs=178.7
Q ss_pred CCCcccee-ecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhC-CCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCC
Q 047572 383 RRDYLGVY-PQKQEGFSYVGLHIPVGRVQADDMDELARLADAYG-SGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFS 460 (595)
Q Consensus 383 ~~~~~Gv~-~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg-~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~ 460 (595)
+..|+|++ +|+++|+|||||++|+|+||++||+.||++|++|| +|.++||+||||||+||+.+++++++++|...|+.
T Consensus 50 ~~~~~G~~~~~~~~g~fmvRvrip~G~lt~~Qlr~la~ia~~yg~~g~i~lTtRQniql~~i~~~dl~~i~~~L~~~GL~ 129 (513)
T PRK09566 50 RLKWLGMFWRPVTPGKFMLRLRVPNGILTSEQLRVLASIVQRYGDDGSADITTRQNLQLRGILLEDLPEILNRLKAVGLT 129 (513)
T ss_pred hheeeEEeeEcCCCCeEEEEeccCCccCCHHHHHHHHHHHHHhCCCCeEEEEcccceeecCCcHHHHHHHHHHHHHcCCC
Confidence 56788888 56788999999999999999999999999999999 68999999999999999999999999999888887
Q ss_pred C--CCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhh-------hcCCCCceEeeecCCCCCcccccCcEEEEeE
Q 047572 461 P--QPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERL-------VDVTKPVRMHWTGCPNSCAQVQVADIGFMGC 531 (595)
Q Consensus 461 ~--~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~-------~~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~ 531 (595)
+ ..++.+||+++||+++.|+.+++||++++.+|.++|... .++|+||||+||||||+|++++++||||++.
T Consensus 130 ~~~~~~d~vRnv~~~P~ag~~~~e~~D~~~la~~l~~~~~~~~~~~~~~~~LPrKfki~vsGc~~~c~~~~i~DiG~~~~ 209 (513)
T PRK09566 130 SVQSGMDNVRNITGSPVAGIDPDELIDTRPLTQKLQDMLTNNGEGNPEFSNLPRKFNIAIAGGRDNSVHAEINDIAFVPA 209 (513)
T ss_pred chhccCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHhhcccCCCCcccCCCCceEEEEECCCCCcccccccceEEEEE
Confidence 5 345789999999999999999999999999999998641 3699999999999999999999999999998
Q ss_pred eeecCCCceeccEEEEEcCcCCCC-CcccccccCCCCccCHHHHHHHHHHHHHHhHh
Q 047572 532 MTRDEDGKTCEGADVFLGGRIGSD-SHLGDIYKKGVPCKDLVPLVADILVEHFGAVL 587 (595)
Q Consensus 532 ~~~~~~G~~~~gy~I~lGG~~g~~-~~lg~~~~~~v~~eel~~~l~~ll~~~~~~~~ 587 (595)
.. +| ..||+||+||++|.. +++|..+..+|+++++++++++++. +|.+++
T Consensus 210 ~~---~~--~~gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~~~~av~~-~f~~~g 260 (513)
T PRK09566 210 YK---DG--VLGFNVLVGGFFSSQRCAYAIPLNAWVKPDEVVRLCRAILE-VYRDNG 260 (513)
T ss_pred EE---CC--eeEEEEEEecccCCCCCcCceeeeeecCHHHHHHHHHHHHH-HHHHhC
Confidence 53 34 268999999999864 5689999999999999999999995 666654
No 19
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=100.00 E-value=1.1e-34 Score=305.16 Aligned_cols=196 Identities=26% Similarity=0.410 Sum_probs=170.0
Q ss_pred ccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCC-CCCCcc-ce
Q 047572 393 KQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQ-PSILMK-GL 470 (595)
Q Consensus 393 k~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~-~~~~~r-~v 470 (595)
+++++||||+++|+ +++++||+.||++|++||.|.+|||++|||+|+||+.+++++++++|...|+... .|+.++ |+
T Consensus 26 ~~~~~~mvRv~ip~-~lt~eqLr~LAdiaekyg~g~i~lTtrQnI~l~~I~~edl~~i~~~L~~~Gl~~~~~G~~vrrni 104 (341)
T TIGR02066 26 SGDVIYTVKAGTPR-LLSVDTLRKLCDIADKYSDGYLRWTIRNNVEFLVSDESKIQPLIDELEEVGFPVGGTGDAVKGNI 104 (341)
T ss_pred CCCcEEEEEeCCCc-ccCHHHHHHHHHHHHHhCCCeEEEeccCCEEEecCCHHHHHHHHHHHHhccCCCCCCCCcccccc
Confidence 46899999999999 9999999999999999999999999999999999999999999999988888764 456566 99
Q ss_pred eecCCccccchhhhHHHHHHHHHHHHHHhhh---cCCCCceEeeecCCCCCcccccCcEEEEeEeee-------------
Q 047572 471 VACTGNQFCGQAIIETKARALKVTKEVERLV---DVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTR------------- 534 (595)
Q Consensus 471 ~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~---~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~------------- 534 (595)
++|+|.++|+++++||.+++..|.+.|.+.+ .+|+||||+||||||+|++++++||||+|....
T Consensus 105 ~aC~G~~~C~~a~~dt~~l~~~l~~~l~~~~~~~~lP~KfKI~vSGC~~~C~~~~~~Dig~~g~~~~~p~~~~~~~~~~c 184 (341)
T TIGR02066 105 VHTQGWLHCHIPAIDASGIVKAVMDELYEYFTDHKLPAMVRISLSCCANMCGGVHASDIAIVGIHRKPPKINHEAVRNVC 184 (341)
T ss_pred ccCcCCCCCCcchhchHHHHHHHHHHHHHHHhcccccccceeccccccccccchhhccccccccccCCcEEcHHHHHhhc
Confidence 9999999999999999999988887776644 689999999999999999999999999996320
Q ss_pred ----------------cCCCc-----------------------------eeccEEEEEcCcCC---CCCcccccccCCC
Q 047572 535 ----------------DEDGK-----------------------------TCEGADVFLGGRIG---SDSHLGDIYKKGV 566 (595)
Q Consensus 535 ----------------~~~G~-----------------------------~~~gy~I~lGG~~g---~~~~lg~~~~~~v 566 (595)
..++. ...||.||+||++| .+|++|+.+..++
T Consensus 185 ~~~~Cv~~CP~~Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~~~~G~~v~vGG~~g~~~~~p~lg~~~~~~~ 264 (341)
T TIGR02066 185 EIPSVVAACPTGALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAAIWVGGKLSNARVMPELSKVVVPWI 264 (341)
T ss_pred CCCceEeeCchhhceecccCCCCceeeccccCCcCCchHHhCchhhccCCCCCeEEEEEccccCccccCCcccceecccc
Confidence 00110 12689999999886 6799999999999
Q ss_pred Cc-----cCHHHHHHHHHHHHHHhHhhcc
Q 047572 567 PC-----KDLVPLVADILVEHFGAVLRER 590 (595)
Q Consensus 567 ~~-----eel~~~l~~ll~~~~~~~~~~r 590 (595)
+. +++++++++++ ++|.++++.+
T Consensus 265 ~~~~~~~e~~~~~i~~i~-~~~~~~~~~~ 292 (341)
T TIGR02066 265 PNNPPRWPELVAYVKKIL-EAWKANAKKH 292 (341)
T ss_pred cCCCcchHHHHHHHHHHH-HHHHHcCcCC
Confidence 87 68999999988 5888876654
No 20
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.8e-34 Score=335.52 Aligned_cols=193 Identities=18% Similarity=0.351 Sum_probs=179.0
Q ss_pred CCccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCCC
Q 047572 384 RDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQP 463 (595)
Q Consensus 384 ~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~ 463 (595)
.++++.+.|| +|+|+|++++|+|+++++||+.|+++|++||.+++|+|++|||+|+||+.+++++++++|...++....
T Consensus 541 ~~~~~~~~qk-~g~~~v~~~~~~G~lt~~ql~~la~ia~~yg~~~i~iT~~Q~i~l~gi~~~~l~~i~~~L~~~gl~~~~ 619 (785)
T TIGR02374 541 NDHFLANIQK-DGTYSVIPRMYGGRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDLKMPGYEHAY 619 (785)
T ss_pred ccceeecccc-CCceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEcCCceEEECCCCHHHHHHHHHHHHhCCCCCCC
Confidence 4678888887 699999999999999999999999999999999999999999999999999999999999888887667
Q ss_pred CCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCCCCCcccccCcEEEEeEeeecCCCceecc
Q 047572 464 SILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEG 543 (595)
Q Consensus 464 ~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~g 543 (595)
++.+|++++|+|.++|++++.||+.++.+|.+.+.. ..+|+||||+||||||+|++++++||||+|.. .|
T Consensus 620 g~~~r~v~aC~G~~~C~~g~~ds~~la~~l~~~~~~-~~~p~k~ki~vSGC~~~C~~~~~~DiG~i~~~---------~g 689 (785)
T TIGR02374 620 GKALRTVKTCVGSQWCRYGNQDSVQLAIQLERRYEG-LRTPHKIKIGVSGCERECAEAAGKDVGVIATE---------KG 689 (785)
T ss_pred CCCccCcccCCCccccCcchhhHHHHHHHHHHHhcc-cCCCCceEEEEECCccccchhhhCcEEEEEec---------CC
Confidence 888999999999999999999999999999888875 56899999999999999999999999999974 47
Q ss_pred EEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHHhHhh
Q 047572 544 ADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLR 588 (595)
Q Consensus 544 y~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~~~~ 588 (595)
|+||+||+.|.+|++|+++...++.|++++++++++. ||.+++.
T Consensus 690 ~~v~vGG~~g~~~~~a~~l~~~~~~e~v~~~i~~~l~-~y~~~~~ 733 (785)
T TIGR02374 690 WNLYVGGNGGTHPRHGDLLAVDEDEETLIGYIDRFLQ-YYRETAD 733 (785)
T ss_pred eEEEECCcCCCCCcceeeecCCCCHHHHHHHHHHHHH-HHHHhCc
Confidence 9999999999999999999999999999999999995 7777643
No 21
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=4.9e-34 Score=332.42 Aligned_cols=192 Identities=15% Similarity=0.296 Sum_probs=176.1
Q ss_pred CCccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCC-
Q 047572 384 RDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQ- 462 (595)
Q Consensus 384 ~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~- 462 (595)
.+++..+.|+ +|+|||++++|+|+++++||+.||++|++|| +.+|+|++|||+|+||+.+++++++++|...|+...
T Consensus 552 n~~~~~n~Qk-~g~~~v~~~~p~G~lt~~ql~~ia~iA~kyg-~~~~iT~~Q~i~L~~i~~~~l~~v~~~L~~~Gl~~~~ 629 (847)
T PRK14989 552 NDNFLANIQK-DGTYSVIPRSAGGEITPEGLMAVGRIAREFN-LYTKITGSQRIGLFGAQKDDLPEIWRQLIEAGFETGH 629 (847)
T ss_pred cccccccccc-CCeEEEEEEcCCcEeCHHHHHHHHHHHHHHC-CcEEEcCCCceEeCCCCHHHHHHHHHHHHHCCCCcCC
Confidence 4566678887 7999999999999999999999999999999 579999999999999999999999999988888764
Q ss_pred -CCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCCCCCcccccCcEEEEeEeeecCCCcee
Q 047572 463 -PSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTC 541 (595)
Q Consensus 463 -~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~ 541 (595)
.++.+|++++|||+++|++++.||++++.+|.+++.. +.+|+||||+||||||+|++|+++||||+|..
T Consensus 630 ~~g~~vr~v~aC~G~~~C~~g~~dt~~la~~l~~~~~~-~~~P~k~ki~vSGC~~~C~~~~i~DiG~i~~~--------- 699 (847)
T PRK14989 630 AYAKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKG-IRTPHKMKFGVSGCTRECAEAQGKDVGIIATE--------- 699 (847)
T ss_pred CCCCCcCceeeCCCCCccccccccHHHHHHHHHHHhcc-CCCCCceEEEEeCCcccccccccccEEEEEec---------
Confidence 3577999999999999999999999999999888764 67899999999999999999999999999974
Q ss_pred ccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHHhHhh
Q 047572 542 EGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLR 588 (595)
Q Consensus 542 ~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~~~~ 588 (595)
.||+||+||+.|.+|++|+++...++++++++++++++. ||.++++
T Consensus 700 ~G~~v~vGG~~G~~~~~g~~l~~~~~~~~v~~~i~~~l~-~y~~~~~ 745 (847)
T PRK14989 700 KGWNLYVCGNGGMKPRHADLLAADLDRETLIKYLDRFMM-FYIRTAD 745 (847)
T ss_pred CceEEEECCCCCCCCcceeeecCCCCHHHHHHHHHHHHH-HHHHhCc
Confidence 479999999999999999999999999999999999884 8887764
No 22
>PLN02431 ferredoxin--nitrite reductase
Probab=100.00 E-value=1e-33 Score=316.59 Aligned_cols=196 Identities=19% Similarity=0.262 Sum_probs=174.2
Q ss_pred HHhhcccceecccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCC
Q 047572 122 RLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGL 201 (595)
Q Consensus 122 rlk~~G~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL 201 (595)
+.+|.|+|.| +++|.|||++++|+|+||++||+.||++|++||. |.|++|+||||||+||+.+++++++++|...|+
T Consensus 381 ~~~~~Gv~~Q--k~~G~~~v~v~vp~Grlt~~qL~~LA~lA~~yG~-g~irlT~~Qni~i~~V~~~~v~~l~~~l~~~g~ 457 (587)
T PLN02431 381 RRDYLGVHPQ--KQEGLSYVGLHVPVGRLQAADMDELARLADEYGS-GELRLTVEQNIIIPNVPNSKVEALLAEPLLQRF 457 (587)
T ss_pred ccceeEEEee--ccCCeEEEEEEcCCCCCCHHHHHHHHHHHHHhCC-CeEEEcCCCCEEECCCCHHHHHHHHHHHHhcCC
Confidence 4578899986 3579999999999999999999999999999994 999999999999999999999999999988888
Q ss_pred cccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEe
Q 047572 202 TSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMP 281 (595)
Q Consensus 202 ~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~ 281 (595)
.+. .++.+|||++||++++|..++.||.++|.+|.+.|.. ...||+||||+||||++.|++++++||||++
T Consensus 458 ~~~--~~~~~r~vvACtG~~~C~~ai~eTk~~A~~L~~~l~~-------~~~lp~k~kI~vSGCpn~C~~~~iaDIG~vG 528 (587)
T PLN02431 458 SPN--PGLLLKGLVACTGNQFCGQAIIETKARALKVTEELER-------LVEVPRPVRMHWTGCPNSCGQVQVADIGFMG 528 (587)
T ss_pred CCC--CCCCccceeECCCccccCccHHHHHHHHHHHHHHHHH-------hhcCCCCeEEEEECCcccccccccccEEEEe
Confidence 653 5789999999999999999999999999999998864 2469999999999999999999999999999
Q ss_pred Eee---cCc--eeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHH
Q 047572 282 ATK---DGR--FGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYR 330 (595)
Q Consensus 282 ~~~---~g~--~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~r 330 (595)
... +|+ .||+|++||++|..+ ..|..+..+|+.+|+++++++|+..|.
T Consensus 529 ~~~~~~~g~~v~gf~V~lGG~~G~~~-~~g~~l~~~Vp~eel~~~v~~il~~~~ 581 (587)
T PLN02431 529 CMARDENGKAVEGADIFVGGRVGSDS-HLAEEYKKGVPCDELVPVVADILIEEF 581 (587)
T ss_pred eeeecCCCccceEEEEEECCcCCCCC-ccchhhhcCCCHHHHHHHHHHHHHHHh
Confidence 642 343 599999999998654 577788889999999999999665543
No 23
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=100.00 E-value=1.5e-33 Score=285.30 Aligned_cols=206 Identities=23% Similarity=0.461 Sum_probs=183.8
Q ss_pred cCCCCccceeecccCCeEEEEEEcCC-cccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCC
Q 047572 381 WDRRDYLGVYPQKQEGFSYVGLHIPV-GRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKF 459 (595)
Q Consensus 381 ~~~~~~~Gv~~qk~~G~~~v~i~vp~-Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~ 459 (595)
|.. +++|+..+. ++.|++||++|. |.+++++|+.|++||++||+|.|++|+|||++|++|+.++++.+.++|...|+
T Consensus 15 w~~-~~~Gvi~r~-~~t~~vRv~~ppgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L~~iG~ 92 (317)
T COG2221 15 WKY-VGYGVIKRR-DGTYTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELREIGL 92 (317)
T ss_pred ccc-cCCceeeec-cCcEEEEEecCCCCccCHHHHHHHHHHHHHhCCCeEEEEecCceEeccCCHHHHHHHHHHHHHcCC
Confidence 544 678999876 688999999987 99999999999999999999999999999999999999999999999988888
Q ss_pred CC-CCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCCCCCcccccCcEEEEeEeeec---
Q 047572 460 SP-QPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRD--- 535 (595)
Q Consensus 460 ~~-~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~--- 535 (595)
.. +.|+.+|+++||+|...|..|+.||.+++.+|.++|.+ ..+|.||||.+|||||+|++++.+||||+|+..+.
T Consensus 93 ~~G~~G~~vr~i~aC~G~~~C~~a~~Dt~~la~~l~e~f~~-~~~P~KfKI~vsGCPn~C~r~~~~DigivGv~~P~~~~ 171 (317)
T COG2221 93 PVGSTGPAVRAIVACPGPRTCETALYDTTELARRLEEEFLE-VPVPYKFKIAVSGCPNDCTRPQAHDIGIVGVWKPKVDE 171 (317)
T ss_pred CCCCcchhhhhhhcCcCcccccccccChHHHHHHHHHHhhc-CCCCceEEEEeecCCcccccccccceeEEEeecCccCH
Confidence 75 57899999999999999999999999999999999874 67899999999999999999999999999997631
Q ss_pred -------------------CCCc--------------------------eeccEEEEEcCcCCCCC-cccccccCCCCcc
Q 047572 536 -------------------EDGK--------------------------TCEGADVFLGGRIGSDS-HLGDIYKKGVPCK 569 (595)
Q Consensus 536 -------------------~~G~--------------------------~~~gy~I~lGG~~g~~~-~lg~~~~~~v~~e 569 (595)
.+|+ -..||.|+|||+.|+.+ +.|..+....++|
T Consensus 172 E~c~gc~~cv~~C~~gAI~~~~~~l~id~~~Ci~Cg~Ci~~Cp~~~~~~ek~g~~i~VGGk~Gr~~~r~g~~~~~~~~~d 251 (317)
T COG2221 172 ELCRGCGKCVKVCPTGAITWDGKKLKIDGSKCIGCGKCIRACPKAAFRGEKVGIAILVGGKTGRELGRVGKPLVPVEDED 251 (317)
T ss_pred HHhchhHhHHHhCCCCceeeccceEEEehhhccCccHHhhhCChhhcchhhccEEEEEccccCCccccccccccccCCHH
Confidence 0110 04589999999999876 8999999888999
Q ss_pred CHHHHHHHHHHHHHHhHhhcc
Q 047572 570 DLVPLVADILVEHFGAVLRER 590 (595)
Q Consensus 570 el~~~l~~ll~~~~~~~~~~r 590 (595)
+|+.+|+.++ ++|.++++++
T Consensus 252 ei~~ii~~~~-e~~~~~~~~~ 271 (317)
T COG2221 252 EIIDIIKKTI-EVWREYAEKP 271 (317)
T ss_pred HHHHHHHHHH-HHHHHhcccc
Confidence 9999999988 6888888764
No 24
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=4.6e-33 Score=311.72 Aligned_cols=216 Identities=16% Similarity=0.218 Sum_probs=185.8
Q ss_pred hcccceecccCCCeEEEEEecCCCccCHH---HH-HHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcC
Q 047572 125 WLGLFHRRKHHYGRFMMRLKLPNGVTTSE---QT-RYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVG 200 (595)
Q Consensus 125 ~~G~y~~~~~~~~~fmvRvripgG~lt~~---Ql-r~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~G 200 (595)
+.|++.| ++|.||+++++|+|+++++ |+ +.|++||++|| +.++||+||||+|+||+.++++++.+.|++.|
T Consensus 353 ~~G~~~q---~dG~~~v~l~vp~Grl~~~~~~~l~~~LaeIA~~yg--~~irlT~~Qnl~l~~V~~~~~~~i~~~L~~~G 427 (577)
T TIGR02042 353 YLGWHEQ---GDGKWFLGLHIDSGRVKDDGNWQLKKALREIVEKYN--LPVRLTPNQNIILYDIQPEWKRAITTVLAQRG 427 (577)
T ss_pred cceEEEC---CCceEEEEEEecCceecCCchHHHHHHHHHHHHHhC--CCEEEcCCCCeEECCCCHHHHHHHHHHHHhcC
Confidence 4566654 4789999999999999996 44 79999999999 36999999999999999999999999999999
Q ss_pred CcccCCCCCCcCceecCCCCCCCCCCccChHH----HHHHHHHHHHhccCCCCCccCC-CCceEEEEecCCCCCCcCccC
Q 047572 201 LTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRP----YTNLLSHFITANAQGNPTVTNL-PRKWNVCVVGSHDLYEHPHIN 275 (595)
Q Consensus 201 L~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~----la~~l~~~~~~~~~~~~~~~~L-PrKfkI~isgc~~~c~~~~~~ 275 (595)
|.+.+++++.+||+++||+...|...+.||.. +++.+.+.+.. ..| |+||||+|||||+.|++++++
T Consensus 428 l~~~~~~~~~~~~~~aC~G~~~C~lal~et~~~~~~l~~~l~~l~~~--------~~l~~~~i~I~vSGCpn~Ca~p~ia 499 (577)
T TIGR02042 428 VLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKRIRALLEK--------VGLPDEHFVVRMTGCPNGCARPYMA 499 (577)
T ss_pred CCCCCCCCccceeeEeCCCcccccCchHHHHHHHHHHHHHHHHHHHh--------cCCCCCCcEEEEECCCccccCCCcC
Confidence 98777788899999999999999999999985 55555555432 346 599999999999999999999
Q ss_pred ceEEEeEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHH
Q 047572 276 DLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGF 355 (595)
Q Consensus 276 DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f 355 (595)
||||++... .+|+|++||+.+.. ..+..+..+|+.+++++++++++..|++++.. .+||.++++|+|+++|
T Consensus 500 DIG~vG~~~---~~y~l~lGG~~~~~--rla~~~~~~vp~~ei~~vl~~ll~~y~~~r~~----~E~f~~fi~R~G~e~~ 570 (577)
T TIGR02042 500 ELGFVGSAP---NSYQVWLGGSPNQT--RLARPFIDKLKDGDLEKVLEPLFVHFKQSRQS----GESFGDFCDRVGFDAL 570 (577)
T ss_pred cEEEECCCC---CcEEEEECCCCCcc--cchhHHhcCcCHHHHHHHHHHHHHHHHHhccC----CCCHHHHHHHcCcHHH
Confidence 999999643 37999999987632 45667778999999999999999999987543 4699999999999999
Q ss_pred HHHHHhh
Q 047572 356 RAEVVKR 362 (595)
Q Consensus 356 ~~~v~~~ 362 (595)
++.++.+
T Consensus 571 ~~~l~~~ 577 (577)
T TIGR02042 571 REFVESY 577 (577)
T ss_pred HHHHhcC
Confidence 9998753
No 25
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=100.00 E-value=3e-33 Score=314.26 Aligned_cols=198 Identities=20% Similarity=0.296 Sum_probs=174.8
Q ss_pred CCCccceeeccc--------------CCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHH
Q 047572 383 RRDYLGVYPQKQ--------------EGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLE 448 (595)
Q Consensus 383 ~~~~~Gv~~qk~--------------~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~ 448 (595)
+..++|+|.|++ +..||+|+++|+|+||++||+.||+||++||+|.+++|+||||||+||+.++++
T Consensus 47 ~lk~~G~y~q~~r~~r~~~~~~~~~~~~~fm~RvriP~G~lt~~Ql~~la~la~~yg~G~i~lTtRQniQL~gI~~~~l~ 126 (569)
T PRK13504 47 LLKFHGSYQQDDRDIRAERAEQKLEPAYQFMLRCRLPGGVITPQQWLALDKLADEYGNGTLRLTTRQTFQFHGILKKNLK 126 (569)
T ss_pred HHhheeeeEecchhhhhhhcccccCcCcceEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEecccceeecCCchHhHH
Confidence 456789998852 136999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCC--CCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHh------------------------h--
Q 047572 449 ALLKEPLLEKFSP--QPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVER------------------------L-- 500 (595)
Q Consensus 449 ~l~~el~~~g~~~--~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~------------------------~-- 500 (595)
++++++...++.+ .+++.+||+++||+ ++|+.++.||++++.+|.+.|.. .
T Consensus 127 ~i~~~L~~~gl~t~~a~gd~~RNV~~~p~-~~~~~~~~d~~~la~~l~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 205 (569)
T PRK13504 127 PVIQTINSVLLDTLAACGDVNRNVMCTPN-PYESRLHAEAYEWAKKISDHLLPRTRAYAEIWLDGEKVATFSGTEEEPIY 205 (569)
T ss_pred HHHHHHHHcCCCcccccCCCCCceecCCC-cccccchHHHHHHHHHHHHHhccccchhHHhhhcCcccccccccccCccc
Confidence 9999998888875 46899999999996 69999999999999999988741 1
Q ss_pred --hcCCCCceEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCC-------CcccccccCCCCccCH
Q 047572 501 --VDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSD-------SHLGDIYKKGVPCKDL 571 (595)
Q Consensus 501 --~~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~-------~~lg~~~~~~v~~eel 571 (595)
..||+||||+|||||++|++++++||||++.. .+|+ +.||+|||||++|.. |++|..+. +|+++++
T Consensus 206 ~~~~LPrKfKiavsgc~~~c~~~~~~DiG~~~~~---~~g~-~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~-~v~~e~v 280 (569)
T PRK13504 206 GKTYLPRKFKIAVAVPPDNDVDVYANDLGFVAIA---ENGK-LVGFNVLVGGGMGMTHGDKETYPRLADELG-YVPPEDV 280 (569)
T ss_pred ccCCCCCceEEEEEcCCccccCceecceEEEEEe---cCCc-EEEEEEEEEccccCCCCCCCCCCccccccC-ccCHHHH
Confidence 14899999999999999999999999999986 3554 468999999999864 78888886 8999999
Q ss_pred HHHHHHHHHHHHHhHh
Q 047572 572 VPLVADILVEHFGAVL 587 (595)
Q Consensus 572 ~~~l~~ll~~~~~~~~ 587 (595)
++++++++. +|.+++
T Consensus 281 ~~~~~ai~~-~~~~~G 295 (569)
T PRK13504 281 LDVAEAVVT-TQRDYG 295 (569)
T ss_pred HHHHHHHHH-HHHHhC
Confidence 999999995 677654
No 26
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=7.7e-33 Score=309.00 Aligned_cols=197 Identities=18% Similarity=0.296 Sum_probs=172.3
Q ss_pred CCccceeecccCC--------------eEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHH
Q 047572 384 RDYLGVYPQKQEG--------------FSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEA 449 (595)
Q Consensus 384 ~~~~Gv~~qk~~G--------------~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~ 449 (595)
..++|++.|++.+ .||+|+++|+|+||++|++.||+||++||+|.|+||+||||||+||+.+++++
T Consensus 34 lk~~G~y~q~~~~~~~~~~~~~~~~~~~fmvRvripgG~lt~~Ql~~la~ia~~yg~g~i~lTtRQniQl~gI~~~~l~~ 113 (541)
T TIGR02041 34 IKFHGMYQQDDRDLRAERAEQKLEPAYQFMLRCRLPGGVITPKQWLAIDKFAREYGNGSIRLTTRQTFQFHGILKRNLKA 113 (541)
T ss_pred HHHheeeeeccccchhhhcccccCCcceeEEEEecCCcEECHHHHHHHHHHHHHhCCCeEEEecccceEEcCCChhHHHH
Confidence 4467888887433 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCC--CCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhh--------------------------h
Q 047572 450 LLKEPLLEKFSP--QPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERL--------------------------V 501 (595)
Q Consensus 450 l~~el~~~g~~~--~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~--------------------------~ 501 (595)
+++++...|+.+ .+++.+|||+ |+++|+|+.+..|+..++.+|.+.|... .
T Consensus 114 v~~~L~~~GL~t~~a~gd~~RnV~-c~~~p~~~~~~~e~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (541)
T TIGR02041 114 VHQAIHSAGLDSIATCGDVNRNVL-CTSNPYESELHQEAYEWAKKISEHLLPRTRAYHEIWLDEKKVAGTEEVEPIYGPT 192 (541)
T ss_pred HHHHHHHcCCCccccCCCCCCcee-CCCCcccCCCHHHHHHHHHHHHHHhccCchhHHHHhhhcccccCCcccCcccccc
Confidence 999998888875 4688999987 9999999999999999999998765321 1
Q ss_pred cCCCCceEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCC-------CcccccccCCCCccCHHHH
Q 047572 502 DVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSD-------SHLGDIYKKGVPCKDLVPL 574 (595)
Q Consensus 502 ~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~-------~~lg~~~~~~v~~eel~~~ 574 (595)
.||+||||+|||||++|++++++||||++.. .+|+ +.||+||+||++|.+ |++|..+. +|++++++++
T Consensus 193 ~LPrKfKi~isg~~~~~~~~~~~DiG~~a~~---~~g~-~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~-~v~~e~v~~~ 267 (541)
T TIGR02041 193 YLPRKFKTGVVIPPINDVDVYANDLGFVAIA---DNGK-LIGFNVLIGGGLGMTHGNKATYPRLANEIG-FIPPEHTLAV 267 (541)
T ss_pred CCCCCcEEEEECCCCccccccccceEEEEEE---eCCc-EEEEEEEEeccccCCCCCcCCCCccccccC-CCCHHHHHHH
Confidence 3999999999999999999999999999986 3444 468999999998753 78999886 9999999999
Q ss_pred HHHHHHHHHHhHh
Q 047572 575 VADILVEHFGAVL 587 (595)
Q Consensus 575 l~~ll~~~~~~~~ 587 (595)
++.++. +|.++.
T Consensus 268 ~~ai~~-~~~~~g 279 (541)
T TIGR02041 268 AEAIVT-TQRDFG 279 (541)
T ss_pred HHHHHH-HHHHhC
Confidence 999996 555543
No 27
>PLN00178 sulfite reductase
Probab=100.00 E-value=1.6e-32 Score=308.77 Aligned_cols=222 Identities=18% Similarity=0.208 Sum_probs=190.7
Q ss_pred hcccceecccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCccc
Q 047572 125 WLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSL 204 (595)
Q Consensus 125 ~~G~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~ 204 (595)
+.|++.| ++|.|++++++|+|+|+++|++.|++||++|| +.+++|++|||+|+||+.++++++.+.|++.||.+.
T Consensus 395 ~~G~~~q---~dG~~~v~l~vp~Grit~~~l~~La~iAe~yg--~~iRlT~~Qnlil~~I~~~~~~~i~~~L~~~Gl~~~ 469 (623)
T PLN00178 395 YLGWHEQ---GDGKLFYGVHVDNGRIKGEAKKALREVIEKYN--LPVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEP 469 (623)
T ss_pred ceeEEEc---cCCcEEEEEecCCeecCHHHHHHHHHHHHHhC--CcEEEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCC
Confidence 4566654 35889999999999999999999999999998 479999999999999999999999999999999876
Q ss_pred CCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCC--CCceEEEEecCCCCCCcCccCceEEEeE
Q 047572 205 QSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNL--PRKWNVCVVGSHDLYEHPHINDLAYMPA 282 (595)
Q Consensus 205 ~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~L--PrKfkI~isgc~~~c~~~~~~DIg~v~~ 282 (595)
...+...|++++||+...|+.++.||..++..|.+.+...+ ....| |+||||+||||++.|++++++||||++.
T Consensus 470 ~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~~~l~~~~----~~~~l~~~~~i~I~vSGCpNgCarp~iaDIGlvG~ 545 (623)
T PLN00178 470 EEVDPLNRTAMACPALPLCPLAITEAERGIPDILKRVRAMF----NKVGLKYDESVVVRMTGCPNGCARPYMAELGFVGD 545 (623)
T ss_pred CCCCcceeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHH----hhcCCCCCCceEEEEeCCCccccccccCcEEEEcC
Confidence 55667899999999999999999999999987777654311 01234 5999999999999999999999999994
Q ss_pred eecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHHhh
Q 047572 283 TKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKR 362 (595)
Q Consensus 283 ~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~~~ 362 (595)
. ..+|+||+||..+. ...+..+...|+.+++.++++.++..|++++.. .+||.++++|+|+++|++.++.+
T Consensus 546 ~---~~~Y~I~lGG~~~~--~~la~~~~~~V~~eei~~~le~ll~~y~~~r~~----~E~f~df~~R~G~e~~~~~~~~~ 616 (623)
T PLN00178 546 G---PNSYQIWLGGTPNQ--TRLAEPFMDKVKVDDLEKVLEPLFYMWKQQRQE----KESFGDFTNRVGFEALKEYIESY 616 (623)
T ss_pred C---CCeEEEEECCCCCc--ccccchhhcCcCHHHHHHHHHHHHHHHHHhCcC----CCCHHHHHHHcCcHHHHHHHHHh
Confidence 2 33899999997543 245667778899999999999999999987654 45999999999999999999987
Q ss_pred CC
Q 047572 363 MP 364 (595)
Q Consensus 363 ~~ 364 (595)
.+
T Consensus 617 ~~ 618 (623)
T PLN00178 617 AG 618 (623)
T ss_pred cC
Confidence 75
No 28
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=99.98 E-value=5.8e-32 Score=288.84 Aligned_cols=206 Identities=21% Similarity=0.374 Sum_probs=175.8
Q ss_pred Cccceeec--ccC-------CeEEEEEEcCCcc-cCHHHHHHHHHHHHHhCCCeEEEcC-CCceEeeccChhhHHHHHHh
Q 047572 385 DYLGVYPQ--KQE-------GFSYVGLHIPVGR-VQADDMDELARLADAYGSGELRLTV-EQNIIIPNVDNSKLEALLKE 453 (595)
Q Consensus 385 ~~~Gv~~q--k~~-------G~~~v~i~vp~Gr-l~a~ql~~La~iA~~yg~g~irlT~-~Qni~l~~I~~~~v~~l~~e 453 (595)
..-||+.| .++ +.|+|||++|.|. +|++||+.||+|+++||+|.+++|. +|||+|++|+.+++++++++
T Consensus 60 yg~GVigr~~~~~~~~p~~~~~~tvRv~~P~G~~~tteqLR~LaDiaekYGsG~~~~tgstqdIiL~gv~~e~le~i~~e 139 (402)
T TIGR02064 60 YGGGVIGRYSDQGEKFPGVAEFHTVRVAQPSGKFYSTDYLRQLCDVWEKYGSGLTNFHGQTGDIVFLGTQTPQLQEIFEE 139 (402)
T ss_pred cCCEEEEEecCCcccCCCcCeEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCEEEEeccccCEEEcCCCHHHHHHHHHH
Confidence 34467765 333 8899999999999 5999999999999999999999984 89999999999999999999
Q ss_pred hhcCCCCC-CCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhh---cCCCCceEeeecCCCCCcccc-cCcEEE
Q 047572 454 PLLEKFSP-QPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLV---DVTKPVRMHWTGCPNSCAQVQ-VADIGF 528 (595)
Q Consensus 454 l~~~g~~~-~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~---~lp~~~kI~iSGCpn~Ca~~~-~aDIGl 528 (595)
|...|++. ..|+.+|++++|+|..+|++++.||+.++.+|.++|.+.+ .+|.||||+||||||+|++++ ++||||
T Consensus 140 L~~~G~dlggsG~~vRti~aC~G~~~C~~a~~DT~~l~~~L~~~~~~~~~~~~lP~KfKI~vSGCpn~C~~~~~~~DIG~ 219 (402)
T TIGR02064 140 LTNLGTDLGGSGSNLRTPESCVGPARCEFACYDTLKACYELTMEYQDELHRPAFPYKFKFKFSGCPNDCVAAIARSDFAV 219 (402)
T ss_pred HhhcccCCCCCCCCccceecCCCcccCCCcccccHHHHHHHHHHHHhhhhhccCCccccccccccccccccceeccCcee
Confidence 87777765 3567899999999999999999999999999999987643 589999999999999999999 999999
Q ss_pred EeEeeecC----------------------------------CCc---------------------------eeccEEEE
Q 047572 529 MGCMTRDE----------------------------------DGK---------------------------TCEGADVF 547 (595)
Q Consensus 529 vG~~~~~~----------------------------------~G~---------------------------~~~gy~I~ 547 (595)
+|+..++. +++ ...||.|+
T Consensus 220 iG~~r~~~~id~~~~~~~~~~cg~~~~~~~~v~~Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~p~a~~~g~~~G~~il 299 (402)
T TIGR02064 220 IGTWKDDIKVDQEAVKAYIAGWGKFDIENEVVNRCPTKAISWDGSKELSIDNRECVRCMHCINKMPKALHPGDERGVTIL 299 (402)
T ss_pred eccccCCccccHHHHHHHHhhccccccchhHhhcCCccccccCCCceEEEcchhcCcCccccccCcccccCCCCCeEEEE
Confidence 99743200 000 13589999
Q ss_pred EcCcCC--CCCcccccccCCC----CccCHHHHHHHHHHHHHHhHhhccc
Q 047572 548 LGGRIG--SDSHLGDIYKKGV----PCKDLVPLVADILVEHFGAVLRERE 591 (595)
Q Consensus 548 lGG~~g--~~~~lg~~~~~~v----~~eel~~~l~~ll~~~~~~~~~~r~ 591 (595)
+||+.+ .+|++|..+..++ +.+++.+++++++ +||.+++++||
T Consensus 300 vGGk~~~~~g~~lg~~~~~f~~~e~~~eei~~~i~~i~-~~~~e~g~~~E 348 (402)
T TIGR02064 300 IGGKAPILDGAQMGWVVVPFVEAEEPYDEIKELVEKII-DWWDEEGKNRE 348 (402)
T ss_pred EccCCCCCCCCcccceecccccCCCCHHHHHHHHHHHH-HHHHHhCCccc
Confidence 999997 5699999998888 4579999999988 58888877654
No 29
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=99.97 E-value=1.6e-31 Score=287.83 Aligned_cols=182 Identities=19% Similarity=0.217 Sum_probs=160.0
Q ss_pred cccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCC--CCCCCccc
Q 047572 392 QKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSP--QPSILMKG 469 (595)
Q Consensus 392 qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~--~~~~~~r~ 469 (595)
|+++| ||+||++|+|+|+++||+.||++|++||+|.||||+||||||+||+.+ ++++++++...|+.+ ..++.+||
T Consensus 13 ~~~dg-~mvRvr~p~G~lt~~ql~~la~ia~~yg~g~i~lTtRQniql~gv~~~-~~~l~~~l~~~GL~~~~~~g~~~Rn 90 (390)
T TIGR02435 13 QAGDG-LLVRVRLPGGRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGLTAD-HDALSQALLAAGLGAAGAAADDIRN 90 (390)
T ss_pred ccCCe-eEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEEccccceecccCcc-HHHHHHHHHHCCCCCccccCCcccc
Confidence 46777 699999999999999999999999999999999999999999999999 999999998888875 45689999
Q ss_pred eeecCCccccchhhhHHHHHHHHHHHHHHhh---hcCCCCceEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEE
Q 047572 470 LVACTGNQFCGQAIIETKARALKVTKEVERL---VDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADV 546 (595)
Q Consensus 470 v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~---~~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I 546 (595)
+++||++..|+.+++||++++.+|.+.|... .++|+||||+||||+|+|++++++||||++... +++ .+|+|
T Consensus 91 v~~cp~~g~~~~~~~dt~~la~~l~~~l~~~~~~~~LPrKfki~vsgc~~~c~~~~~~DIG~~~~~~---~~~--~gf~v 165 (390)
T TIGR02435 91 IEVSPLAGIDPGEIADTRPLAAELRAALENERALLELPPKFSVAIDGGGRLVLLGDTADVRLQALTT---GAG--VAWVV 165 (390)
T ss_pred cccCccccCCCccccchHHHHHHHHHHHhcChhhhcCCCceEEEEECCCccccCCCCCCEEEEEEec---CCE--EEEEE
Confidence 9999999999999999999999999999764 368999999999999999999999999999752 332 48999
Q ss_pred EEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHHhH
Q 047572 547 FLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAV 586 (595)
Q Consensus 547 ~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~~ 586 (595)
++||..+....+ .+|+++++++++++++. +|.++
T Consensus 166 ~vGG~~~~~~~~-----~~v~~~~v~~~v~av~~-~~~~~ 199 (390)
T TIGR02435 166 SLAGISTSARSL-----VTVAPDAAVPVAVALLR-VFVEL 199 (390)
T ss_pred EEecCCCCCCce-----EEeCHHHHHHHHHHHHH-HHHHh
Confidence 999965432323 37999999999999996 55544
No 30
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=99.97 E-value=2.2e-31 Score=251.79 Aligned_cols=150 Identities=33% Similarity=0.571 Sum_probs=130.2
Q ss_pred CCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEeEeecCc
Q 047572 208 MDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGR 287 (595)
Q Consensus 208 gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~~~g~ 287 (595)
||.+|||++||+++.|+.+++||.+++.+|.++|.. ++....||+||||+||||+++|++++++||||+++..+..
T Consensus 2 g~~vrnv~aC~g~~~C~~a~~dt~~la~~l~~~~~~----~~~~~~lp~k~kI~isGCpn~C~~~~i~DIG~~g~~~~~~ 77 (157)
T PF01077_consen 2 GDTVRNVTACPGSGFCPLALIDTKPLARELEDYLEE----RFEDPNLPRKFKIAISGCPNSCARPQINDIGFIGVKKPNG 77 (157)
T ss_dssp SSSBHHEEESTGGGTBTT-SSBHHHHHHHHHHHTHH----HHHCSCSSS-BEEEEESSTTSTTSGGGSSEEEEEEEESTC
T ss_pred CCCCcccccCCChhhCchHHhCHHHHhhHhhhcccc----cccccccccccccceeecccccccccccccccceeeeccc
Confidence 789999999999999999999999999999987765 3345789999999999999999999999999999987655
Q ss_pred e-eEEEEEcCcCCCcccccccccc--ccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHHhhCC
Q 047572 288 F-GFNLLVGGFFSPKRCAEAIPLD--AWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMP 364 (595)
Q Consensus 288 ~-gf~v~vGG~~g~~~~~~~~~l~--~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~~~~~ 364 (595)
. ||+|+|||++|.++ ..+..+. .+++.|++++++++|+++|+ |++.++.++||+++|+++|+|+|+++|+++++
T Consensus 78 ~~g~~v~vGG~~g~~~-~~~~~~~~~~~~~~ee~~~~i~~il~~y~--~~~~~~~~er~~~~i~r~G~e~~~~~v~~~~~ 154 (157)
T PF01077_consen 78 EEGFDVYVGGGLGRHP-RLGRELALAGFVPEEEVLEVIEAILEYYR--GNREARKKERFKDFIERLGFEKFREEVEERLG 154 (157)
T ss_dssp EEEEEEEES-BESTST-BEBEEEEEEEEEEGGGHHHHHHHHHHHHH--S-HSSGTT-SHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cceeeeeecccccCCC-CccceeeccccccHHHHHHHHHHHHHHHH--HhccCCCCCCHHHHHHHHCHHHHHHHHHHHhC
Confidence 4 99999999999765 4444454 68899999999999999999 77777889999999999999999999999986
No 31
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=99.97 E-value=3.9e-30 Score=269.59 Aligned_cols=197 Identities=24% Similarity=0.394 Sum_probs=167.3
Q ss_pred ccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhc--CCCC---
Q 047572 386 YLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLL--EKFS--- 460 (595)
Q Consensus 386 ~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~--~g~~--- 460 (595)
..|+..|+|+|+||+|+++|+|+++++||+.||++|++||+|.+|+|++|||+|+||+.+++++++++|.. .++.
T Consensus 9 ~~~~~~~~~~g~~~vrv~~p~G~lt~~qlr~la~ia~~yg~g~~~~TtrQ~i~l~~i~~~~~~~v~~~L~~~~~gl~~~~ 88 (314)
T TIGR02912 9 KNAFRVTKVRGKTAIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNKALQPIIEGLEINQ 88 (314)
T ss_pred hCCeEEeecCCceEEEEEccceecCHHHHHHHHHHHHHhCCCeEEEecccceEecCcCHHHHHHHHHHHHHHhhcccccc
Confidence 34899999999999999999999999999999999999999999999999999999999999999887742 1221
Q ss_pred ----C-CCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCCCCCcccccCcEEEEeEeeec
Q 047572 461 ----P-QPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRD 535 (595)
Q Consensus 461 ----~-~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~ 535 (595)
. ..++.+|++++|+|.++|++++.||++++..|.+.+. ..|++|+|+||||||+|++++++||||+|.....
T Consensus 89 ~~~~~G~~g~~vR~i~aC~g~~~C~~~~~dt~~l~~~l~~~~~---~~~~k~ki~iSGCp~~C~~~~~~DiG~~g~~~~~ 165 (314)
T TIGR02912 89 EDVQKGYSASGTRNITACIGNRVCPFANYDTTKFAKRIEKAVF---PNDYHVKIALTGCPNDCAKARMHDFGIIGMTEPQ 165 (314)
T ss_pred cccccccccCCccceeeCCCCCCCCCCcccHHHHHHHHHHHhh---cCCceEEEEEeCCCchhhHHHHhhcccccccCCc
Confidence 1 2356688999999999999999999999999987764 3578999999999999999999999999863100
Q ss_pred --------------------------CCCc--------------------------eeccEEEEEcCcCCC-CCcccccc
Q 047572 536 --------------------------EDGK--------------------------TCEGADVFLGGRIGS-DSHLGDIY 562 (595)
Q Consensus 536 --------------------------~~G~--------------------------~~~gy~I~lGG~~g~-~~~lg~~~ 562 (595)
.+++ ...+|.+++||+.|. .|+++..+
T Consensus 166 ~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~~~~id~~~C~~Cg~Cv~~CP~~Al~~~~~~~~~v~~gg~~g~~~p~~~~~~ 245 (314)
T TIGR02912 166 YDADRCIGCGACVKVCKKKAVGALSFENYKVVRDHSKCIGCGECVLKCPTGAWTRSEEKYYKLRLMGRTGKKNPRLGEDF 245 (314)
T ss_pred eeCccCCcchHHHHhcChhhcCceeccCCeEEeCCCcCcCcchhhhhCCHhhcccCcCCcEEEEEcCccCCCCcchhhhh
Confidence 0000 013599999999987 59999999
Q ss_pred cCCCCccCHHHHHHHHHHHHHHhH
Q 047572 563 KKGVPCKDLVPLVADILVEHFGAV 586 (595)
Q Consensus 563 ~~~v~~eel~~~l~~ll~~~~~~~ 586 (595)
...++.+++++++++++ ++|.++
T Consensus 246 ~~~~~~~~v~~~~~~~~-~~~~~~ 268 (314)
T TIGR02912 246 IKWVDEDSIVKIILNTY-DYITEY 268 (314)
T ss_pred hhhcCcchhHHHHHHHH-HHHHHH
Confidence 99999999999999988 466665
No 32
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4e-26 Score=249.75 Aligned_cols=195 Identities=21% Similarity=0.324 Sum_probs=168.5
Q ss_pred CCccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCC--
Q 047572 384 RDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSP-- 461 (595)
Q Consensus 384 ~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~-- 461 (595)
..+.|++.|..++.||+|+++|+|.+|++||+.|++||++||+|.+++|+||||||+||..++++++++++...++.+
T Consensus 44 ~~~~G~y~q~~~~~~MlRvriPgG~ls~~q~r~l~~iA~~yg~g~~~iTtRQniQ~hgI~~~d~~~i~~~l~~vgl~ti~ 123 (510)
T COG0155 44 LKFDGLYLQEPDHAFMLRVRIPGGILSPKQLRALADIARRYGRGTIELTTRQNIQFHGIRKKDVPEILAELASVGLHTIA 123 (510)
T ss_pred HhhcceeecccccceeEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEeecccceecccccccHHHHHHHHHHcCCcchh
Confidence 456799999778999999999999999999999999999999999999999999999999999999999998877764
Q ss_pred CCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhh---hcCCCCceEeeecCCCCCcccccCcEEEEeEeeecCCC
Q 047572 462 QPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERL---VDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDG 538 (595)
Q Consensus 462 ~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~---~~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G 538 (595)
.+++..||++++|-+..-...++|...++..+...+... ..||+||||.|+|||.+|..++++||||++... .+|
T Consensus 124 ~~gd~~Rnv~~~P~ag~~~~ei~D~r~~~~~~~~~l~~~~~~~~LPRKFkiav~g~~~~~v~~~~~Di~~~a~~~--~~~ 201 (510)
T COG0155 124 TAGDVARNVTGDPLAGLDADEIADPRPLAEILRIWLDGEKGFAYLPRKFKIAVDGGPDNDVDVLINDIGFVAIKE--NDG 201 (510)
T ss_pred hccccccceecCcccccchhhcccchhHHHHHHHHhcCccchhcCCcceEEEEecCcccchhhhccceeEEEecc--cCC
Confidence 568889999987666666667788785555544444432 358999999999999999999999999999863 233
Q ss_pred ceeccEEEEEcCcCCCC-CcccccccCCCCccCHHHHHHHHHHHH
Q 047572 539 KTCEGADVFLGGRIGSD-SHLGDIYKKGVPCKDLVPLVADILVEH 582 (595)
Q Consensus 539 ~~~~gy~I~lGG~~g~~-~~lg~~~~~~v~~eel~~~l~~ll~~~ 582 (595)
..||+|++||++|.. |..+..+...|+.+++++++++++..|
T Consensus 202 --~~Gf~v~VGGglg~~~~~~~~~~~~~v~~~~~~~~~~aiv~~~ 244 (510)
T COG0155 202 --LLGFNVLVGGGLGRTHPKTAPRLAEFVPPEDVLEVVEAIVRVY 244 (510)
T ss_pred --ccceEEEEccccccCCcchhhHHhhccCHHHHHHHHHHHHHHH
Confidence 379999999999988 889999999999999999999988643
No 33
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.94 E-value=2.9e-26 Score=252.79 Aligned_cols=207 Identities=24% Similarity=0.270 Sum_probs=187.7
Q ss_pred cCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCc
Q 047572 134 HHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRN 213 (595)
Q Consensus 134 ~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~Rn 213 (595)
+++|+|.++.|+|||++++++|+.|+++|++||. -++.+|.-|.|-|.|+++++++++|..|... +..+-|-..|.
T Consensus 548 qkdgTysvvPrm~GG~~~~~~L~~Iadva~ky~l-~~vK~Tg~Qri~l~G~k~edLp~~w~~l~~~---sg~ay~k~lrt 623 (793)
T COG1251 548 QKDGTYSVVPRMPGGVTNPEELRAIADVAEKYNL-PTVKITGGQRIDLLGVKKEDLPAIWADLGMA---SGHAYGKALRT 623 (793)
T ss_pred ccCCeEEEeccccCcccCHHHHHHHHHHHHHhCc-ceeeccCCceeeecCCCcccchhHHHhcccc---chhHHHHhhhh
Confidence 3478999999999999999999999999999998 8999999999999999999999999999544 56667788999
Q ss_pred eecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEeEeecCceeEEEE
Q 047572 214 PVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLL 293 (595)
Q Consensus 214 I~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~~~g~~gf~v~ 293 (595)
|..||++.+|.....|+..|...|++.+.. ..+|.|+|+++||||..|+.+.+.|+|+|++.+ ||++|
T Consensus 624 vK~Cvg~~~Cr~g~qds~~Lgi~le~~~~g--------l~~P~k~k~~vSgCpr~CaEa~~KDvGii~t~~----G~~l~ 691 (793)
T COG1251 624 VKTCVGSTFCRFGTQDSVGLGIRLEKRYEG--------LRTPHKVKMAVSGCPRNCAEAGIKDVGIIGTEK----GWNLY 691 (793)
T ss_pred HhhCCCcchhhhCccchhhHhHHHHHHhcc--------CCCCcceeEeeccCCcccccccCcceEEEeccc----CceEE
Confidence 999999999999999999999999998764 689999999999999999999999999999876 99999
Q ss_pred EcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHHh
Q 047572 294 VGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVK 361 (595)
Q Consensus 294 vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~~ 361 (595)
+||.-|.++ ..+..+..-.+.|+++.++.+++.+||+.+++. .|+..||+++|+++|++++..
T Consensus 692 vgG~~g~~~-r~a~~~~~~~~e~e~l~~i~~~~~~yr~~~~~l----eR~~~wi~~~Gl~~~k~~v~~ 754 (793)
T COG1251 692 VGGNGGMKP-RHADLLAKVLTEEEVLEYIDAFLQYYRETADYL----ERTAPWLDRLGLEHIKEVVLD 754 (793)
T ss_pred eccccCcch-hhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhcchHHHHHHhhc
Confidence 999888665 445556667799999999999999999998764 499999999999999997753
No 34
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=99.89 E-value=2e-23 Score=197.50 Aligned_cols=116 Identities=33% Similarity=0.668 Sum_probs=100.8
Q ss_pred CCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhh---cCCCCceEeeecCCCCCcccccCcEEEEeEeeecCCCce
Q 047572 464 SILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLV---DVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKT 540 (595)
Q Consensus 464 ~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~---~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~ 540 (595)
|+.+||+++|||+++|++++.||.+++.+|.++|.... .+|+||+|+||||||+|++++++||||+|...+ +++
T Consensus 2 g~~vrnv~aC~g~~~C~~a~~dt~~la~~l~~~~~~~~~~~~lp~k~kI~isGCpn~C~~~~i~DIG~~g~~~~--~~~- 78 (157)
T PF01077_consen 2 GDTVRNVTACPGSGFCPLALIDTKPLARELEDYLEERFEDPNLPRKFKIAISGCPNSCARPQINDIGFIGVKKP--NGE- 78 (157)
T ss_dssp SSSBHHEEESTGGGTBTT-SSBHHHHHHHHHHHTHHHHHCSCSSS-BEEEEESSTTSTTSGGGSSEEEEEEEES--TCE-
T ss_pred CCCCcccccCCChhhCchHHhCHHHHhhHhhhcccccccccccccccccceeecccccccccccccccceeeec--ccc-
Confidence 56799999999999999999999999999998887653 689999999999999999999999999999753 221
Q ss_pred eccEEEEEcCcCCCCCccccccc--CCCCccCHHHHHHHHHHHHHH
Q 047572 541 CEGADVFLGGRIGSDSHLGDIYK--KGVPCKDLVPLVADILVEHFG 584 (595)
Q Consensus 541 ~~gy~I~lGG~~g~~~~lg~~~~--~~v~~eel~~~l~~ll~~~~~ 584 (595)
.+|+||+||+.|.+++++..+. ..++.|+++++++.++. +|.
T Consensus 79 -~g~~v~vGG~~g~~~~~~~~~~~~~~~~~ee~~~~i~~il~-~y~ 122 (157)
T PF01077_consen 79 -EGFDVYVGGGLGRHPRLGRELALAGFVPEEEVLEVIEAILE-YYR 122 (157)
T ss_dssp -EEEEEEES-BESTSTBEBEEEEEEEEEEGGGHHHHHHHHHH-HHH
T ss_pred -ceeeeeecccccCCCCccceeeccccccHHHHHHHHHHHHH-HHH
Confidence 2899999999999999999988 58899999999999995 666
No 35
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.88 E-value=1.6e-22 Score=223.28 Aligned_cols=253 Identities=19% Similarity=0.341 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHHhc-cC-------CCccchhhHHHHHhhChHHHHHHHHhhCCCCCC-----CCCCCc----------
Q 047572 318 VIPVCKAVLEAYRDLG-FR-------GNRQKTRMMWLIDELGIEGFRAEVVKRMPGQEL-----DRGSSE---------- 374 (595)
Q Consensus 318 v~~~~~ail~~~rd~g-~r-------~~R~kaRl~~li~~~G~e~f~~~v~~~~~~~~l-----~~~~~~---------- 374 (595)
++++++.|+..+.... +- ..-.+.-++.+|..-|+..|.+..++ ++ +.. .++-..
T Consensus 453 C~plveqlL~~~~~~~~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~v~~~-~~-~~~gc~~c~pa~~~~l~~~~~~~~ 530 (793)
T COG1251 453 CKPLVEQLLAATLGDQFAVNNAICGCTDLSRDEVVHLIRAKGLKTFPEVMNV-LG-WKTGCAKCRPAINYYLASCWPDEY 530 (793)
T ss_pred cHHHHHHHHHhhcccccccccccccCcCCCHHHHHHHHHHhccCCHHHHHHH-hc-ccCCcceechhhccceeeeccCcc
Confidence 3566677777654322 10 11234567788888888887776654 22 111 000000
Q ss_pred --hhhhcccCCCCccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHH
Q 047572 375 --DLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLK 452 (595)
Q Consensus 375 --~~~~~~~~~~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~ 452 (595)
+.....-...+| -+-|| ||.|.+.-+.|+|.+++++|++|+++|++||...+.+|..|-|-|.|++.++++++|+
T Consensus 531 ~~~~~s~~~~~~~h--aniqk-dgTysvvPrm~GG~~~~~~L~~Iadva~ky~l~~vK~Tg~Qri~l~G~k~edLp~~w~ 607 (793)
T COG1251 531 EDDEQSRLQNERDH--ANIQK-DGTYSVVPRMPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWA 607 (793)
T ss_pred Ccchhhhhhcccch--hhccc-CCeEEEeccccCcccCHHHHHHHHHHHHHhCcceeeccCCceeeecCCCcccchhHHH
Confidence 000000122344 34566 7899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCCCCCcccccCcEEEEeEe
Q 047572 453 EPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCM 532 (595)
Q Consensus 453 el~~~g~~~~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~ 532 (595)
+|... ...+.+...|.+..|||+.+|.++..+|..+...|.+.+.. +..|+|+++.+||||++|+.+.+.|+|++++.
T Consensus 608 ~l~~~-sg~ay~k~lrtvK~Cvg~~~Cr~g~qds~~Lgi~le~~~~g-l~~P~k~k~~vSgCpr~CaEa~~KDvGii~t~ 685 (793)
T COG1251 608 DLGMA-SGHAYGKALRTVKTCVGSTFCRFGTQDSVGLGIRLEKRYEG-LRTPHKVKMAVSGCPRNCAEAGIKDVGIIGTE 685 (793)
T ss_pred hcccc-chhHHHHhhhhHhhCCCcchhhhCccchhhHhHHHHHHhcc-CCCCcceeEeeccCCcccccccCcceEEEecc
Confidence 87654 23345677999999999999999999999999999888875 78899999999999999999999999999984
Q ss_pred eecCCCceeccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHHhHh
Q 047572 533 TRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVL 587 (595)
Q Consensus 533 ~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~~~ 587 (595)
.||++|+||..|..++.+.++....++|+++.++.+++. ||.+.+
T Consensus 686 ---------~G~~l~vgG~~g~~~r~a~~~~~~~~e~e~l~~i~~~~~-~yr~~~ 730 (793)
T COG1251 686 ---------KGWNLYVGGNGGMKPRHADLLAKVLTEEEVLEYIDAFLQ-YYRETA 730 (793)
T ss_pred ---------cCceEEeccccCcchhhhhhhhhcCCHHHHHHHHHHHHH-HHHHHH
Confidence 589999999999999999999999999999999999885 777655
No 36
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.6e-19 Score=186.47 Aligned_cols=191 Identities=23% Similarity=0.360 Sum_probs=152.3
Q ss_pred Cccceeec--c--cCCe---EEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcC
Q 047572 385 DYLGVYPQ--K--QEGF---SYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLE 457 (595)
Q Consensus 385 ~~~Gv~~q--k--~~G~---~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~ 457 (595)
.+.|++.| + +.|+ ||+|.+.|+|..+++|...+.+++++||+|.++||+||++|||||=..++..+++.+...
T Consensus 118 KfhGiy~qddRd~r~gr~y~FM~R~klP~Gvtt~qq~l~lddls~k~G~gtlklTTRqtfQihGVlkknlk~~lrgi~kv 197 (638)
T KOG0560|consen 118 KFHGIYHQDDRDIRYGRSYSFMMRAKLPNGVTTPQQWLALDDLSDKYGNGTLKLTTRQTFQIHGVLKKNLKETLRGIAKV 197 (638)
T ss_pred HHhhhhhhcchhhhcchhhhhhheecCCCCCCCHHHHHHHHHHHHhhCCceeeeeeeceeeeeeeehhhhHHHHHHHHHH
Confidence 45688887 2 4577 999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCC--CCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhh-------------------------h---------
Q 047572 458 KFSP--QPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERL-------------------------V--------- 501 (595)
Q Consensus 458 g~~~--~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~-------------------------~--------- 501 (595)
++++ ++++..||+++ +.+|+-..-.......++.|.+.|... +
T Consensus 198 ~ltTL~a~gD~~RNv~~-sa~P~~~kd~~qi~dt~k~is~~llP~T~~y~e~w~e~~q~ve~rkv~Gn~~~d~epiygpt 276 (638)
T KOG0560|consen 198 GLTTLGACGDVNRNVVG-SANPINGKDHEQIVDTAKNISALLLPYTNLYHEFWTEGPQVVEARKVHGNADVDNEPIYGPT 276 (638)
T ss_pred Hhhhhhhhccccccccc-cCCCccccCHHHHHHHHHHHhhhhCCccchHHHHhhcCcHHhhhhccCCCcccccccccCcc
Confidence 5553 67898999875 444444443333333444444433210 0
Q ss_pred cCCCCceEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCC-------CcccccccCCCCccCHHHH
Q 047572 502 DVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSD-------SHLGDIYKKGVPCKDLVPL 574 (595)
Q Consensus 502 ~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~-------~~lg~~~~~~v~~eel~~~ 574 (595)
-||+|||+.|++-|.+-.+++++|||++... ++++ +.||||++||+.|+. ||+|+.+. +|+.|+|++.
T Consensus 277 yLPRKfkv~Vavp~dn~vd~~tnDva~v~i~---end~-~~GfNv~VGGgmgtthr~ekt~prla~~~g-yVptddIl~~ 351 (638)
T KOG0560|consen 277 YLPRKFKVCVAVPPDNDVDVLTNDVALVAIN---ENDG-VFGFNVLVGGGMGTTHRNEKTYPRLAELDG-YVPTDDILPL 351 (638)
T ss_pred cCccceeEEEecCCCccccccccceeEEEEe---ccCC-ceeeEEEeccccCCcccchhhccccccccc-ccchhhhHHH
Confidence 1799999999999999999999999999986 2332 689999999999853 77887776 8999999999
Q ss_pred HHHHHHH
Q 047572 575 VADILVE 581 (595)
Q Consensus 575 l~~ll~~ 581 (595)
+++|+..
T Consensus 352 vkaIli~ 358 (638)
T KOG0560|consen 352 VKAILIV 358 (638)
T ss_pred hhhheee
Confidence 9999963
No 37
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=99.63 E-value=4.5e-16 Score=126.86 Aligned_cols=63 Identities=41% Similarity=0.705 Sum_probs=59.1
Q ss_pred CCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHc
Q 047572 136 YGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQV 199 (595)
Q Consensus 136 ~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~ 199 (595)
+|.||+|+++|+|++|++||+.|+++|++||. |.+++|+||||+|+||+.++++++++.|+++
T Consensus 7 ~g~~~v~~~~~~G~i~~~~l~~la~ia~~yg~-~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~~ 69 (69)
T PF03460_consen 7 DGFYMVRIRIPGGRISAEQLRALAEIAEKYGD-GEIRLTTRQNLQLRGVPEENLPAIFEELKEA 69 (69)
T ss_dssp TTEEEEEEB-GGGEEEHHHHHHHHHHHHHHST-SEEEEETTSCEEEEEEEGGGHHHHHHHHHHT
T ss_pred CeEEEEEEeCCCEEECHHHHHHHHHHHHHhCC-CeEEECCCCeEEEeCCCHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999995 9999999999999999999999999999874
No 38
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=99.60 E-value=1.6e-15 Score=123.62 Aligned_cols=66 Identities=41% Similarity=0.721 Sum_probs=61.6
Q ss_pred eeccc-CCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhh
Q 047572 390 YPQKQ-EGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPL 455 (595)
Q Consensus 390 ~~qk~-~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~ 455 (595)
|+|++ +|+|++++++|+|++++++|+.|+++|++||.+.||||+||||+|+||+.+++++++++|.
T Consensus 1 ~~qk~~~g~~~v~~~~~~G~i~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~ 67 (69)
T PF03460_consen 1 HPQKDGDGFYMVRIRIPGGRISAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELK 67 (69)
T ss_dssp EECTTSTTEEEEEEB-GGGEEEHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHH
T ss_pred CCCCcCCeEEEEEEeCCCEEECHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHH
Confidence 67886 6889999999999999999999999999999999999999999999999999999999875
No 39
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=99.00 E-value=1.4e-09 Score=113.06 Aligned_cols=151 Identities=21% Similarity=0.334 Sum_probs=105.9
Q ss_pred CccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCC-eEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCCC
Q 047572 385 DYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSG-ELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQP 463 (595)
Q Consensus 385 ~~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g-~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~ 463 (595)
-|+|+.+.. .+ ..|.+... ..|.-+..+ |.| +||++-.++ |.+.+...++=|...++-..
T Consensus 204 LHlGvTEAG-~~--------~~G~iKSa--~gig~LL~~-GIGDTiRVSLt~~------P~~EV~va~~IL~slglr~~- 264 (360)
T PRK00366 204 LHLGVTEAG-MG--------FKGTVKSA--AGLGALLQE-GIGDTIRVSLTAD------PVEEVKVGQEILQSLGLRSR- 264 (360)
T ss_pred ceecccCCC-CC--------CCceehhH--HHHHHHHHh-cCCCeEEEeCCCC------CHHHHHHHHHHHHHcCCccC-
Confidence 467877643 12 45666443 244444444 555 677774443 34555444433333444322
Q ss_pred CCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecC-CCCCcccccCcEEEEeEeeecCCCceec
Q 047572 464 SILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGC-PNSCAQVQVADIGFMGCMTRDEDGKTCE 542 (595)
Q Consensus 464 ~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGC-pn~Ca~~~~aDIGlvG~~~~~~~G~~~~ 542 (595)
-.+++|||| |+....|+..++.++.+.|.. .+.+++|+|+|| +|+|+.+..+|||+.|.+ .
T Consensus 265 ---g~~IisCPg---CgR~~~D~~~la~~vee~~~~---~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~---------~ 326 (360)
T PRK00366 265 ---GPEVISCPT---CGRTEFDVIQELAEVEQRLEH---IKMPLKVAVMGCVVNGPGEAKEADIGIAGGN---------P 326 (360)
T ss_pred ---CCeEEECCC---CCCCcccHHHHHHHHHHHhcC---CCCCcEEEEeCCCCCCCCchhhCcEeEecCC---------C
Confidence 368999997 999999999999999998875 344599999999 599999999999999864 4
Q ss_pred cEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHH
Q 047572 543 GADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEH 582 (595)
Q Consensus 543 gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~ 582 (595)
+|.||.||+.- ..++.+++++.+...+.++
T Consensus 327 ~~~vf~~Gk~v----------~kv~~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 327 KGPVFVDGEKI----------KTLPEENIVEELEAEIEAY 356 (360)
T ss_pred ceEEEECCEEe----------eeeChHhHHHHHHHHHHHH
Confidence 79999999762 1588999998887777544
No 40
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=98.87 E-value=1e-08 Score=106.71 Aligned_cols=111 Identities=16% Similarity=0.130 Sum_probs=90.0
Q ss_pred CCCCHHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEec
Q 047572 185 VLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVG 264 (595)
Q Consensus 185 ~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isg 264 (595)
+.+.++..++-|+++||... -++|++||+ |....+|+..++.++++.|.+ ..+| |||+|+|
T Consensus 245 P~~EV~va~~IL~slglr~~------g~~IisCPg---CgR~~~D~~~la~~vee~~~~--------~~~P--lkIAVmG 305 (360)
T PRK00366 245 PVEEVKVGQEILQSLGLRSR------GPEVISCPT---CGRTEFDVIQELAEVEQRLEH--------IKMP--LKVAVMG 305 (360)
T ss_pred CHHHHHHHHHHHHHcCCccC------CCeEEECCC---CCCCcccHHHHHHHHHHHhcC--------CCCC--cEEEEeC
Confidence 45567777888899999643 379999997 889999999999999999864 3566 9999999
Q ss_pred C-CCCCCcCccCceEEEeEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHH
Q 047572 265 S-HDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAY 329 (595)
Q Consensus 265 c-~~~c~~~~~~DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~ 329 (595)
| .|.|..+..+|||+++.. .+|.||.||..- ..++.+++++.+...++-|
T Consensus 306 C~VNgpGEa~~aDIGIaG~~----~~~~vf~~Gk~v-----------~kv~~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 306 CVVNGPGEAKEADIGIAGGN----PKGPVFVDGEKI-----------KTLPEENIVEELEAEIEAY 356 (360)
T ss_pred CCCCCCCchhhCcEeEecCC----CceEEEECCEEe-----------eeeChHhHHHHHHHHHHHH
Confidence 9 599999999999998743 389999999432 2478888888777777655
No 41
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=97.23 E-value=0.00069 Score=71.25 Aligned_cols=92 Identities=22% Similarity=0.472 Sum_probs=63.8
Q ss_pred cceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCC-CCCcccccCcEEEEeEeeecCCCceeccEEE
Q 047572 468 KGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCP-NSCAQVQVADIGFMGCMTRDEDGKTCEGADV 546 (595)
Q Consensus 468 r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCp-n~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I 546 (595)
-+++||| +|+--.+|...++.++.+++.. ++.+++|+|=||. |+=+...-||||+.|.. . ....|
T Consensus 266 ~~~ISCP---tCGRt~~Dl~~~~~~ie~~l~~---l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg----~----g~~~l 331 (359)
T PF04551_consen 266 PEIISCP---TCGRTEFDLQELVAEIEERLKH---LKKGLKIAVMGCIVNGPGEAKDADIGIAGGG----K----GKGIL 331 (359)
T ss_dssp -EEEE-------TT--SHHHHHHHHHHHHCCC---HHCG-EEEEESSTCCCHHHCTTSSEEEE-E-----T----TCEEE
T ss_pred ceeeeCC---CCCCccchHHHHHHHHHHHHhc---CCCCceEEEEeeeecCCchhhhCceeeecCC----C----CeEEE
Confidence 4789997 6777777777777777766653 4578999999998 99888999999999642 1 34789
Q ss_pred EEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHH
Q 047572 547 FLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEH 582 (595)
Q Consensus 547 ~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~ 582 (595)
|.+|.. +.+.++++++++.+..++.++
T Consensus 332 f~~g~~---------v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 332 FKKGEV---------VKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp ECTTEE---------EEEE-CSTCHHHHHHHHHHHH
T ss_pred EECCEE---------EEecCCHHHHHHHHHHHHHhh
Confidence 988854 333459999999999988655
No 42
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=96.96 E-value=0.0018 Score=68.16 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=79.2
Q ss_pred EecCCCCCHHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEE
Q 047572 181 IRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNV 260 (595)
Q Consensus 181 l~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI 260 (595)
|.+=+.+.+...++-|++.||-..+ -++++||..| .-.+|...+++++.+.+. .|+.-+||
T Consensus 241 Lt~~p~~EV~va~~IL~al~lR~~g------~~~ISCPtCG---Rt~~Dl~~~~~~ie~~l~----------~l~~~lkI 301 (359)
T PF04551_consen 241 LTGDPVEEVKVAFEILQALGLRKRG------PEIISCPTCG---RTEFDLQELVAEIEERLK----------HLKKGLKI 301 (359)
T ss_dssp ECSSCCCHHHHHHHHHHHTTSS-SS-------EEEE----T---T--SHHHHHHHHHHHHCC----------CHHCG-EE
T ss_pred CCCCchHHHHHHHHHHHHhCcCcCC------ceeeeCCCCC---CccchHHHHHHHHHHHHh----------cCCCCceE
Confidence 3455666788889999999996543 2799999654 457899999999988764 47788999
Q ss_pred EEecCC-CCCCcCccCceEEEeEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHH
Q 047572 261 CVVGSH-DLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAY 329 (595)
Q Consensus 261 ~isgc~-~~c~~~~~~DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~ 329 (595)
+|=||. |.-..+.-.|+|+++.-+ ....+|.+|.. +...++.|++++.+..+++-|
T Consensus 302 AVMGCiVNGPGEa~~AD~GiaGgg~---g~~~lf~~g~~----------v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 302 AVMGCIVNGPGEAKDADIGIAGGGK---GKGILFKKGEV----------VKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp EEESSTCCCHHHCTTSSEEEE-E-T---TCEEEECTTEE----------EEEE-CSTCHHHHHHHHHHHH
T ss_pred EEEeeeecCCchhhhCceeeecCCC---CeEEEEECCEE----------EEecCCHHHHHHHHHHHHHhh
Confidence 999996 555566678999995332 25788888832 223358999998888777654
No 43
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=96.83 E-value=0.0042 Score=64.89 Aligned_cols=149 Identities=20% Similarity=0.322 Sum_probs=93.9
Q ss_pred CCccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCC-eEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCC
Q 047572 384 RDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSG-ELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQ 462 (595)
Q Consensus 384 ~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g-~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~ 462 (595)
.-|+|+.+.. .+ ..|.+... ..|..+..+ |.| +||++-.++ |.+.+...++=|...++-..
T Consensus 194 PLHlGVTEAG-~~--------~~G~IKSa--igig~LL~~-GIGDTIRVSLT~d------P~~EV~va~~IL~slglr~~ 255 (346)
T TIGR00612 194 PLHLGVTEAG-MG--------VKGIVKSS--AGIGILLAR-GIGDTIRVSLTDD------PTHEVPVAFEILQSLGLRAR 255 (346)
T ss_pred CceeccccCC-CC--------CCchhHHH--HHHHHHHhh-CCCCeEEEECCCC------cHHHHHHHHHHHHHcCCCcC
Confidence 3577887643 12 45676443 244444444 655 677764433 34555443433333444322
Q ss_pred CCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCC-CCCcccccCcEEEEeEeeecCCCcee
Q 047572 463 PSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCP-NSCAQVQVADIGFMGCMTRDEDGKTC 541 (595)
Q Consensus 463 ~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCp-n~Ca~~~~aDIGlvG~~~~~~~G~~~ 541 (595)
--+++|||. |+--..|...++.++.+.+.. ++.+++|+|=||. |+=+...-||||+.|.. .
T Consensus 256 ----g~~iiSCPt---CGR~~~dl~~~~~~ve~~l~~---~~~~l~VAVMGCvVNGPGEak~ADiGIaggg----~---- 317 (346)
T TIGR00612 256 ----GVEIVACPS---CGRTGFDVEKVVRRVQEALFH---LKTPLKVAVMGCVVNGPGEAKHADIGISGGG----T---- 317 (346)
T ss_pred ----CCeEEECCC---CCCcCCCHHHHHHHHHHHHhc---CCCCCEEEEECceecCCchhhccCeeeecCC----C----
Confidence 247999985 444445556677777777764 5678999999998 99999999999999851 1
Q ss_pred ccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHH
Q 047572 542 EGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADI 578 (595)
Q Consensus 542 ~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~l 578 (595)
..-.||..|..- ..++.+++++.+...
T Consensus 318 g~~~lF~~G~~~----------~kv~~~~~~~~l~~~ 344 (346)
T TIGR00612 318 GSAILFKRGKPK----------AKQPETDMADELIRL 344 (346)
T ss_pred CceEEEECCEEe----------EecCHHHHHHHHHHh
Confidence 236788877642 258888887766543
No 44
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=96.66 E-value=0.011 Score=61.44 Aligned_cols=94 Identities=24% Similarity=0.446 Sum_probs=73.9
Q ss_pred cceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCC-CCCcccccCcEEEEeEeeecCCCceeccEEE
Q 047572 468 KGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCP-NSCAQVQVADIGFMGCMTRDEDGKTCEGADV 546 (595)
Q Consensus 468 r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCp-n~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I 546 (595)
-+++||| +|+-..+|....+.++.+.+.. ++.+++|+|-||- |+=+....+|||+.|... +.-.+
T Consensus 259 v~~iaCP---~CGR~~~dv~~~~~~~~~~~~~---~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~--------~~~~~ 324 (361)
T COG0821 259 VEVIACP---TCGRTEFDVIQTLNEVEQRLEH---LKTPLKVAVMGCVVNGPGEAKHADIGIAGGGK--------GSGPV 324 (361)
T ss_pred ceEEECC---CCCceeehHHHHHHHHHHHhhc---cCCCceEEEEEeEecCCcchhccceeeecCCC--------CeeEE
Confidence 5889997 7888888888888888777764 5567999999996 999999999999999631 34578
Q ss_pred EEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHHh
Q 047572 547 FLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGA 585 (595)
Q Consensus 547 ~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~ 585 (595)
|.+|..- +.++.+++++.+..++.+|..+
T Consensus 325 f~~g~~~----------~~~~~~~~~eel~~~i~~~~~~ 353 (361)
T COG0821 325 FVKGEII----------KKLPEEDIVEELEALIEAYAEE 353 (361)
T ss_pred EECCeEE----------EecChhhHHHHHHHHHHHHHHH
Confidence 8888642 2488888888888888766554
No 45
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=96.52 E-value=0.013 Score=61.24 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=83.0
Q ss_pred eEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCC
Q 047572 170 CADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNP 249 (595)
Q Consensus 170 ~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~ 249 (595)
+||++ |.+=+.+.++..++-|+++||...+ -++++||..|.| .+|...+++++.+.+..
T Consensus 227 TIRVS------LT~dP~~EV~va~~IL~slglr~~g------~~iiSCPtCGR~---~~dl~~~~~~ve~~l~~------ 285 (346)
T TIGR00612 227 TIRVS------LTDDPTHEVPVAFEILQSLGLRARG------VEIVACPSCGRT---GFDVEKVVRRVQEALFH------ 285 (346)
T ss_pred eEEEE------CCCCcHHHHHHHHHHHHHcCCCcCC------CeEEECCCCCCc---CCCHHHHHHHHHHHHhc------
Confidence 66664 2333456777888899999996543 379999976555 58999999999998863
Q ss_pred CccCCCCceEEEEecCC-CCCCcCccCceEEEeEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHH
Q 047572 250 TVTNLPRKWNVCVVGSH-DLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAV 325 (595)
Q Consensus 250 ~~~~LPrKfkI~isgc~-~~c~~~~~~DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ai 325 (595)
++.-+||+|=||. |.-..+.-.|||+.+.- .....||..|..- ..++.+++++.+...
T Consensus 286 ----~~~~l~VAVMGCvVNGPGEak~ADiGIaggg---~g~~~lF~~G~~~-----------~kv~~~~~~~~l~~~ 344 (346)
T TIGR00612 286 ----LKTPLKVAVMGCVVNGPGEAKHADIGISGGG---TGSAILFKRGKPK-----------AKQPETDMADELIRL 344 (346)
T ss_pred ----CCCCCEEEEECceecCCchhhccCeeeecCC---CCceEEEECCEEe-----------EecCHHHHHHHHHHh
Confidence 5556999999995 56667777899998741 2245677777421 346888777765443
No 46
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=96.34 E-value=0.034 Score=58.05 Aligned_cols=116 Identities=18% Similarity=0.158 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEec
Q 047572 185 VLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVG 264 (595)
Q Consensus 185 ~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isg 264 (595)
+.+.++-..+-|+..||...+ -|+++||. |..-.+|....++++.+.+.. ++-.+||+|-|
T Consensus 238 P~~EV~V~~eILqslglR~~~------v~~iaCP~---CGR~~~dv~~~~~~~~~~~~~----------~~~pl~VAVMG 298 (361)
T COG0821 238 PVEEVKVAQEILQSLGLRSRG------VEVIACPT---CGRTEFDVIQTLNEVEQRLEH----------LKTPLKVAVMG 298 (361)
T ss_pred chhhhHHHHHHHHHhCccccC------ceEEECCC---CCceeehHHHHHHHHHHHhhc----------cCCCceEEEEE
Confidence 355666667778888986543 48999995 667788999999999887753 44459999999
Q ss_pred CC-CCCCcCccCceEEEeEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhc
Q 047572 265 SH-DLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLG 333 (595)
Q Consensus 265 c~-~~c~~~~~~DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g 333 (595)
|. |.-..+.-.|||+.+... ..--+|++|..- .-++.+++++-..++++-|-+..
T Consensus 299 CVVNGPGEak~AdiGia~~~~---~~~~~f~~g~~~-----------~~~~~~~~~eel~~~i~~~~~~~ 354 (361)
T COG0821 299 CVVNGPGEAKHADIGIAGGGK---GSGPVFVKGEII-----------KKLPEEDIVEELEALIEAYAEER 354 (361)
T ss_pred eEecCCcchhccceeeecCCC---CeeEEEECCeEE-----------EecChhhHHHHHHHHHHHHHHHh
Confidence 95 666677778999987532 134577887422 22677888877777777766543
No 47
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=95.56 E-value=0.027 Score=64.11 Aligned_cols=89 Identities=18% Similarity=0.477 Sum_probs=68.1
Q ss_pred cceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCC-CCCcccccCcEEEEeEeeecCCCceeccEEE
Q 047572 468 KGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCP-NSCAQVQVADIGFMGCMTRDEDGKTCEGADV 546 (595)
Q Consensus 468 r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCp-n~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I 546 (595)
-..+||| .|+--+.+-+..+.+|-++.. .+| .++|+|=||. ||=+...-||+|+||.. .+..++
T Consensus 632 te~isCP---gCGRT~~dlq~~~~~I~~~~~---hl~-GvkiavMGCIVNGPGEmadAd~GyVG~g--------pgKI~L 696 (733)
T PLN02925 632 TEYVSCP---SCGRTLFDLQEVSAEIREKTS---HLP-GVSIAIMGCIVNGPGEMADADFGYVGGA--------PGKIDL 696 (733)
T ss_pred CeEEECC---CCCCccccHHHHHHHHHHHhh---cCC-CceEEEEeeeecCCccccccccceeccC--------CCeeEE
Confidence 4679998 577777775666666655533 244 5899999997 89898999999999974 145899
Q ss_pred EEcCcCCCCCcccccccCCCCccCHHHHHHHHHH
Q 047572 547 FLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILV 580 (595)
Q Consensus 547 ~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~ 580 (595)
|+|-.. +.+.+|.+++++.+.+||+
T Consensus 697 YvgKec---------V~~nIpeeeAvd~LIeLIK 721 (733)
T PLN02925 697 YVGKEV---------VKRGIAMEEATDALIQLIK 721 (733)
T ss_pred Eeccee---------hhcCCCHHHHHHHHHHHHH
Confidence 998644 4557999999999999885
No 48
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=94.11 E-value=0.096 Score=58.51 Aligned_cols=89 Identities=18% Similarity=0.449 Sum_probs=65.4
Q ss_pred cceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCC-CCCcccccCcEEEEeEeeecCCCceeccEEE
Q 047572 468 KGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCP-NSCAQVQVADIGFMGCMTRDEDGKTCEGADV 546 (595)
Q Consensus 468 r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCp-n~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I 546 (595)
...+|||| |+--+.|-+..+.+|-+... .++ .++|+|-||- |+=+.-.-||+|++|.. .+..++
T Consensus 508 te~isCP~---CgRtlfdlq~t~~~i~~~t~---Hl~-g~kIaiMGCiVNGpGEmadAd~GyVG~g--------pgkI~L 572 (606)
T PRK00694 508 TEYISCPG---CGRTLFDLLEVTQRIRERTQ---HLP-GLKIAVMGCIVNGPGEMADADFGFVGSK--------TGMIDL 572 (606)
T ss_pred ceEEECCC---CCceeehHHHHHHHHHHHhc---cCC-CceEEEEEeEecCCccccccccceecCC--------CCeEEE
Confidence 46799984 66666665444444433332 233 7999999997 89888899999999974 145899
Q ss_pred EEcCcCCCCCcccccccCCCCccCHHHHHHHHHH
Q 047572 547 FLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILV 580 (595)
Q Consensus 547 ~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~ 580 (595)
|+|-.. +.+.+|++++++.+-.|++
T Consensus 573 Y~gKec---------V~~nIPee~Avd~LI~LIk 597 (606)
T PRK00694 573 YVKHTC---------VKAHIPMENAEEELVQLLK 597 (606)
T ss_pred Eeccee---------hhcCCCHHHHHHHHHHHHH
Confidence 997643 4557999999999888885
No 49
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=93.91 E-value=0.075 Score=59.76 Aligned_cols=88 Identities=16% Similarity=0.413 Sum_probs=65.1
Q ss_pred ceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCC-CCCcccccCcEEEEeEeeecCCCceeccEEEE
Q 047572 469 GLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCP-NSCAQVQVADIGFMGCMTRDEDGKTCEGADVF 547 (595)
Q Consensus 469 ~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCp-n~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~ 547 (595)
.-+||| .|+--+.|-+.-..+|-+... .| ..+||+|=||- ||=+.-.-||.|.||.. .+..++|
T Consensus 517 EyISCP---sCGRTLfDLq~tta~Ik~~t~---HL-kGlkI~IMGCIVNGPGEMADADfGYVG~g--------pgkI~LY 581 (611)
T PRK02048 517 EYISCP---GCGRTLYDLQSTIARIKEATS---HL-KGLKIGIMGCIVNGPGEMADADYGYVGAG--------RGKISLY 581 (611)
T ss_pred eEEECC---CCCcchhhHHHHHHHHHHHhC---CC-CCceEEEEEeEecCCchhhhcccceecCC--------CCeEEEE
Confidence 458997 577777776655555543332 23 35999999997 88888889999999974 1358999
Q ss_pred EcCcCCCCCcccccccCCCCccCHHHHHHHHHH
Q 047572 548 LGGRIGSDSHLGDIYKKGVPCKDLVPLVADILV 580 (595)
Q Consensus 548 lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~ 580 (595)
+|-.. +.+.+|++++++.+..|++
T Consensus 582 ~gke~---------V~~nIp~e~Avd~Li~LIk 605 (611)
T PRK02048 582 KQKEC---------VEKNIPEEEAVERLIELIK 605 (611)
T ss_pred eccEE---------EecCCCHHHHHHHHHHHHH
Confidence 97643 5567999999999988885
No 50
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=93.82 E-value=0.056 Score=62.73 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCc
Q 047572 157 YLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLT 202 (595)
Q Consensus 157 ~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~ 202 (595)
.|+++|++||. |.|++|+||.+.|.||+.++++++.+.|.+.|+.
T Consensus 279 ~I~eiA~kyG~-g~I~tt~r~~~elp~i~~~die~i~~~L~~~glp 323 (731)
T cd01916 279 DILEEAQKLGI-PVIATNDKIMLGLPDVTDEDPDKIVEDLVSGKIP 323 (731)
T ss_pred cHHHHHHHhCC-CEEEechhhhcCCCCCccccHHHHHHHHHhCCCC
Confidence 47899999995 9999999999999999999999999999999984
No 51
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=93.71 E-value=0.33 Score=55.58 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=71.9
Q ss_pred HHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCC-CCCC
Q 047572 192 ILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSH-DLYE 270 (595)
Q Consensus 192 i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~-~~c~ 270 (595)
.+.-|+..|+-... -.+++||+ |..-++|-..++.+|.++.. .||. +||||=||. |.-.
T Consensus 618 ~~~ILQ~~~~R~~k------te~isCPg---CGRT~~dlq~~~~~I~~~~~----------hl~G-vkiavMGCIVNGPG 677 (733)
T PLN02925 618 SFGLLQGCRMRNTK------TEYVSCPS---CGRTLFDLQEVSAEIREKTS----------HLPG-VSIAIMGCIVNGPG 677 (733)
T ss_pred HHHHHHHhCccccC------CeEEECCC---CCCccccHHHHHHHHHHHhh----------cCCC-ceEEEEeeeecCCc
Confidence 34556777775443 35889997 55667787788888877642 3665 699999995 5555
Q ss_pred cCccCceEEEeEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhcc
Q 047572 271 HPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGF 334 (595)
Q Consensus 271 ~~~~~DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~ 334 (595)
...-.|+|+|+.-. -..++|+|-.. +...|+.+++++ .+++.-+++|.
T Consensus 678 EmadAd~GyVG~gp---gKI~LYvgKec----------V~~nIpeeeAvd---~LIeLIKe~G~ 725 (733)
T PLN02925 678 EMADADFGYVGGAP---GKIDLYVGKEV----------VKRGIAMEEATD---ALIQLIKDHGR 725 (733)
T ss_pred cccccccceeccCC---CeeEEEeccee----------hhcCCCHHHHHH---HHHHHHHHcCc
Confidence 55557999999653 26899998521 223478887665 44555556664
No 52
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=91.28 E-value=0.18 Score=58.62 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCC
Q 047572 414 MDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKF 459 (595)
Q Consensus 414 l~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~ 459 (595)
+-.|+++|++||++.|.+|++|.+.|++|+.++++++.++|...++
T Consensus 277 ~~~I~eiA~kyG~g~I~tt~r~~~elp~i~~~die~i~~~L~~~gl 322 (731)
T cd01916 277 RADILEEAQKLGIPVIATNDKIMLGLPDVTDEDPDKIVEDLVSGKI 322 (731)
T ss_pred cccHHHHHHHhCCCEEEechhhhcCCCCCccccHHHHHHHHHhCCC
Confidence 4569999999999999999999999999999999999888866553
No 53
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=86.98 E-value=2.9 Score=47.13 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=61.6
Q ss_pred ceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCC-CCCCcCccCceEEEeEeecCceeEE
Q 047572 213 NPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSH-DLYEHPHINDLAYMPATKDGRFGFN 291 (595)
Q Consensus 213 nI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~-~~c~~~~~~DIg~v~~~~~g~~gf~ 291 (595)
+.++||. |..-++|-...+.+|.+... .|| -+||+|-||. |.-..-.-.|+|+++.-. -..+
T Consensus 509 e~isCP~---CgRtlfdlq~t~~~i~~~t~----------Hl~-g~kIaiMGCiVNGpGEmadAd~GyVG~gp---gkI~ 571 (606)
T PRK00694 509 EYISCPG---CGRTLFDLLEVTQRIRERTQ----------HLP-GLKIAVMGCIVNGPGEMADADFGFVGSKT---GMID 571 (606)
T ss_pred eEEECCC---CCceeehHHHHHHHHHHHhc----------cCC-CceEEEEEeEecCCccccccccceecCCC---CeEE
Confidence 5789997 45557786666677766542 467 5999999995 555555557999998653 2688
Q ss_pred EEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhcc
Q 047572 292 LLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGF 334 (595)
Q Consensus 292 v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~ 334 (595)
+|+|=.. +...|+.+++++ .+++.-+++|.
T Consensus 572 LY~gKec----------V~~nIPee~Avd---~LI~LIke~G~ 601 (606)
T PRK00694 572 LYVKHTC----------VKAHIPMENAEE---ELVQLLKEHGV 601 (606)
T ss_pred EEeccee----------hhcCCCHHHHHH---HHHHHHHHcCC
Confidence 9988521 223478887665 44555556664
No 54
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=86.20 E-value=0.79 Score=53.61 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCC
Q 047572 157 YLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGL 201 (595)
Q Consensus 157 ~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL 201 (595)
.|+++|++||. +.|..|+|+.+.|.||+.+|++++++.|.+.|+
T Consensus 316 ~L~eiA~~ygt-~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~ 359 (781)
T PRK00941 316 DILEEAKKLGI-PVIATNDKICLGLPDRTDEDVDEIIEDLVSGKI 359 (781)
T ss_pred cHHHHHHHhCC-CEEEecccccccCCCCCccCHHHHHHHHHhCCC
Confidence 47899999995 999999999999999999999999999999886
No 55
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=83.86 E-value=2.7 Score=47.75 Aligned_cols=90 Identities=11% Similarity=0.111 Sum_probs=59.5
Q ss_pred eecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCC-CCCCcCccCceEEEeEeecCceeEEE
Q 047572 214 PVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSH-DLYEHPHINDLAYMPATKDGRFGFNL 292 (595)
Q Consensus 214 I~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~-~~c~~~~~~DIg~v~~~~~g~~gf~v 292 (595)
-++||. |..-++|-..-..+|.+... .||. +||+|=||. |.-..-.-.|.|+|+.-. -..++
T Consensus 518 yISCPs---CGRTLfDLq~tta~Ik~~t~----------HLkG-lkI~IMGCIVNGPGEMADADfGYVG~gp---gkI~L 580 (611)
T PRK02048 518 YISCPG---CGRTLYDLQSTIARIKEATS----------HLKG-LKIGIMGCIVNGPGEMADADYGYVGAGR---GKISL 580 (611)
T ss_pred EEECCC---CCcchhhHHHHHHHHHHHhC----------CCCC-ceEEEEEeEecCCchhhhcccceecCCC---CeEEE
Confidence 569996 55667777777677666542 4777 999999995 444443446999998643 26788
Q ss_pred EEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhc
Q 047572 293 LVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLG 333 (595)
Q Consensus 293 ~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g 333 (595)
|+|-.. +...|+.|++++-+ ++.-+++|
T Consensus 581 Y~gke~----------V~~nIp~e~Avd~L---i~LIk~~g 608 (611)
T PRK02048 581 YKQKEC----------VEKNIPEEEAVERL---IELIKANG 608 (611)
T ss_pred EeccEE----------EecCCCHHHHHHHH---HHHHHHcC
Confidence 988521 22347888776544 44445555
No 56
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=80.72 E-value=1.7 Score=50.99 Aligned_cols=45 Identities=9% Similarity=0.192 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCC
Q 047572 414 MDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEK 458 (595)
Q Consensus 414 l~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g 458 (595)
+-.|+++|++||.+.|.+|+++.+.|++|+.++++++.++|...+
T Consensus 314 ~p~L~eiA~~ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~ 358 (781)
T PRK00941 314 RTDILEEAKKLGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGK 358 (781)
T ss_pred cccHHHHHHHhCCCEEEecccccccCCCCCccCHHHHHHHHHhCC
Confidence 456999999999999999999999999999999999999987655
No 57
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=46.08 E-value=83 Score=29.26 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=51.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCCCCCCccceeecCCccccchhhhH
Q 047572 406 VGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIE 485 (595)
Q Consensus 406 ~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~~~~~r~v~AC~G~~~C~~a~~e 485 (595)
.|.|+.+.++.||+.. +|+..++..+..-.. -|...+ .....+..|.|. .|... .
T Consensus 26 ~g~i~~~~~~~iA~~l-------------------~i~~~~v~~v~tFY~--~f~~~p-~gk~~I~VC~g~-~C~~~--G 80 (145)
T PF01257_consen 26 YGYIPEEALEEIAEAL-------------------GIPPAEVYGVATFYS--MFRLEP-KGKHHIRVCTGT-SCHLR--G 80 (145)
T ss_dssp HSS--HHHHHHHHHHH-------------------TS-HHHHHHHHHHSS--SS-SSS---SEEEEEE-SH-HHHTT--T
T ss_pred cCCCCHHHHHHHHHHH-------------------CCCHHHHHHHHHHHH--HcccCC-CCCcEEEeCCCc-hHHhC--C
Confidence 3566666655555542 477777777766331 222222 124689999997 57553 3
Q ss_pred HHHHHHHHHHHHHhh---hcCCCCceEeeecCCCCCccc
Q 047572 486 TKARALKVTKEVERL---VDVTKPVRMHWTGCPNSCAQV 521 (595)
Q Consensus 486 t~~~a~~l~~~l~~~---~~lp~~~kI~iSGCpn~Ca~~ 521 (595)
+..+...+.+.|.-. ...+..|.+.-++|-..|.+.
T Consensus 81 a~~l~~~l~~~l~i~~g~~~~dg~~~l~~~~ClG~C~~a 119 (145)
T PF01257_consen 81 AEELLEALEEELGIKPGETTEDGKFTLEETGCLGACDQA 119 (145)
T ss_dssp HHHHHHHHHHHHCTSCCCCSTTTTEEEEEESSSSSGGGS
T ss_pred CHHHHHHHHHHhCCcccccCCCceEEEEECCCccccCCC
Confidence 455555555555311 234668999999999999643
No 58
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=44.01 E-value=16 Score=32.54 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=34.1
Q ss_pred CceEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHH
Q 047572 506 PVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVAD 577 (595)
Q Consensus 506 ~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ 577 (595)
.--|.|.|||-.|++--...-|+.-. .+|.+- .+|-.-+ ....++.+++-.+++.
T Consensus 52 ~~iIaIDGC~~~Ca~k~le~~g~~~~------------~~i~~t-dlgi~k~----~~~~~~~~~i~~~~~~ 106 (110)
T PF08859_consen 52 RPIIAIDGCPLCCAKKILEEAGVKPD------------EHIVLT-DLGIKKR----KGDDVSEEEIEEVVEA 106 (110)
T ss_pred CceEEECCCHHHHHHHHHHHcCCCCc------------eEEEEe-ecccccC----CCCCCCHHHHHHHHHH
Confidence 35789999999999988877666532 333443 3432211 1235677777666644
No 59
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=30.64 E-value=1.1e+02 Score=34.99 Aligned_cols=124 Identities=16% Similarity=0.309 Sum_probs=71.8
Q ss_pred HHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCcc
Q 047572 195 GLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHI 274 (595)
Q Consensus 195 ~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~ 274 (595)
++..+|..-....-.-+-.+++||.-+ . ++...++.+.+ | |-|.+=+-.+||...
T Consensus 486 eIR~vG~PiV~G~IPGIia~vgC~nyp---~---g~k~v~~iaee-f------------l~RnyiVvttGC~Am------ 540 (772)
T COG1152 486 EIRNVGVPIVMGTIPGIIAVIGCPNYP---A---GTKDVYKIAEE-F------------LKRNYIVVTTGCIAM------ 540 (772)
T ss_pred HHhhcCCceeecCCCeEEEEecCCCCC---c---chhhHHHHHHH-H------------HHcCeEEEecchhhh------
Confidence 456667644332223344566888642 2 34444443333 3 347788888998755
Q ss_pred CceEEEeEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhh-HHHHHhhC
Q 047572 275 NDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRM-MWLIDELG 351 (595)
Q Consensus 275 ~DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl-~~li~~~G 351 (595)
|||.. ..+||+.-|..|.|..-+..- ...+.-|+-..+.-.+..|..+|...--|+| -+++ -|++.|+|
T Consensus 541 -~igmy-kDedGkTlYEkypg~Fd~ggL----vntGsCvSnaHi~GAaIKva~IFak~plrGn--~~EIADYiLNRVG 610 (772)
T COG1152 541 -DIGMY-KDEDGKTLYEKYPGNFDAGGL----VNTGSCVSNAHIAGAAIKVANIFAKRPLRGN--FAEIADYILNRVG 610 (772)
T ss_pred -hccce-ecccCceehhcCCCccccCce----eeccchhhhhhhhhhHHHHHHHhcCCCcCCc--HHHHHHHHHhcCc
Confidence 77765 355777778887776433211 1122345777899999999999987655554 2333 34455544
No 60
>PF13089 PP_kinase_N: Polyphosphate kinase N-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=29.83 E-value=5.6 Score=35.35 Aligned_cols=43 Identities=30% Similarity=0.495 Sum_probs=28.6
Q ss_pred HHHhhcccceecccCCCeEEEEEe-------------cCCCccCHHHHHHHHHHHHHh
Q 047572 121 VRLKWLGLFHRRKHHYGRFMMRLK-------------LPNGVTTSEQTRYLASVIKKY 165 (595)
Q Consensus 121 ~rlk~~G~y~~~~~~~~~fmvRvr-------------ipgG~lt~~Qlr~la~iA~~y 165 (595)
-|+||.+||.. .-+..|||||. -|.|....+|+..|.+.+.+.
T Consensus 29 ERl~Fl~I~ss--NlDEFFmVRVA~Lk~~~~~g~~~~~~~g~tP~eqL~~I~~~v~~l 84 (109)
T PF13089_consen 29 ERLKFLAIFSS--NLDEFFMVRVAGLKRQIEAGVKKRDPDGLTPQEQLDAIRKRVHEL 84 (109)
T ss_dssp HHHHHHHHHHH--HHHHHHHCCCHHHHHHCCHHHCC---S---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhc--chhHHHHHHHHHHHHHHHhccCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 38999999963 23678888873 366766777888888877654
No 61
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=28.60 E-value=50 Score=30.12 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=38.8
Q ss_pred EEEEecCCCCCCcCccCceEEEeEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccC
Q 047572 259 NVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFR 335 (595)
Q Consensus 259 kI~isgc~~~c~~~~~~DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r 335 (595)
=++++|||..|+-.-++.-||.+- +.+.+-- +|-+ ... ..-+++|++.+++..|.+...-.++|
T Consensus 70 IlalDGCp~~Catk~l~~AGv~~D-------~~l~itd-lGik---K~~--~~D~~~edv~kv~~~i~e~l~~~~~~ 133 (135)
T COG4273 70 ILALDGCPLRCATKCLAEAGVQAD-------VHLTITD-LGIK---KTY--PSDCKDEDVEKVARTIKEALTIKLNR 133 (135)
T ss_pred eEEecCChHHHHHHHHHHhcccee-------EEEEehh-cccc---cCC--CCCCCHHHHHHHHHHHHHHhhhcccc
Confidence 478899999998655555555542 2222221 2211 111 23489999999999998876544443
No 62
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=27.37 E-value=3.4e+02 Score=25.42 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=52.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCCCCCCccceeecCCccccchhhhH
Q 047572 406 VGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIE 485 (595)
Q Consensus 406 ~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~~~~~r~v~AC~G~~~C~~a~~e 485 (595)
.|.|+.+.+..||+.. +|+..+|..+..-... |...| .....+..|.|. .|... -
T Consensus 35 ~g~ip~~~~~~iA~~l-------------------~v~~~~v~~v~tFY~~--f~~~p-~gk~~I~VC~g~-~C~~~--G 89 (154)
T PRK07539 35 RGWVPDEAIEAVADYL-------------------GMPAIDVEEVATFYSM--IFRQP-VGRHVIQVCTST-PCWLR--G 89 (154)
T ss_pred hCCCCHHHHHHHHHHh-------------------CcCHHHHHHHHHHHhh--hCcCC-CCCEEEEEcCCc-hHHHC--C
Confidence 3566666655555542 4677777776653322 22222 114567899997 56543 3
Q ss_pred HHHHHHHHHHHHHhhh---cCCCCceEeeecCCCCCccc
Q 047572 486 TKARALKVTKEVERLV---DVTKPVRMHWTGCPNSCAQV 521 (595)
Q Consensus 486 t~~~a~~l~~~l~~~~---~lp~~~kI~iSGCpn~Ca~~ 521 (595)
+..+...|.+.|.-.. ..+..|.+.-++|-..|++.
T Consensus 90 a~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~ClG~C~~g 128 (154)
T PRK07539 90 GEAILAALKKKLGIKPGETTADGRFTLLEVECLGACDNA 128 (154)
T ss_pred HHHHHHHHHHHhCCCCCCcCCCCeEEEEEccccCccCCC
Confidence 4455555555553111 12446888889999999744
No 63
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=27.29 E-value=3.4e+02 Score=25.20 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=53.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCCCCCCccceeecCCccccchhhhH
Q 047572 406 VGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIE 485 (595)
Q Consensus 406 ~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~~~~~r~v~AC~G~~~C~~a~~e 485 (595)
.|.|+.+.+..||+.. +|+..+|..+..-... |...|- ....+..|.|. .|... -
T Consensus 29 ~G~i~~~~~~~iA~~l-------------------~~~~~~v~~v~tFY~~--f~~~p~-gk~~I~VC~g~-~C~~~--G 83 (148)
T TIGR01958 29 KGWVTPEAIAAVAEML-------------------GIPPVWVYEVATFYSM--FDTEPV-GRYHLQVCTNV-PCALR--G 83 (148)
T ss_pred hCCCCHHHHHHHHHHh-------------------CcCHHHHHHHHhHHhh--cCcCCC-CCEEEEEcCCc-hhhhc--C
Confidence 3567777666665542 4677777776653322 222221 13578899997 56543 3
Q ss_pred HHHHHHHHHHHHHhhh---cCCCCceEeeecCCCCCccc
Q 047572 486 TKARALKVTKEVERLV---DVTKPVRMHWTGCPNSCAQV 521 (595)
Q Consensus 486 t~~~a~~l~~~l~~~~---~lp~~~kI~iSGCpn~Ca~~ 521 (595)
+.++...|.+.|.-.. ..+..|.+.-++|-..|...
T Consensus 84 a~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~ClG~C~~a 122 (148)
T TIGR01958 84 SEALLKYLENKLGIKPGETTPDGRFTLVEVECLGACGNA 122 (148)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCccCccCCC
Confidence 3445555555554211 22456899999999999744
No 64
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=26.26 E-value=10 Score=29.20 Aligned_cols=54 Identities=24% Similarity=0.307 Sum_probs=41.6
Q ss_pred cCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCC
Q 047572 150 TTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSG 207 (595)
Q Consensus 150 lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~ 207 (595)
||+.|+..|..|...-+ + .+|..+=-+..++++..+-.+++.|.+.||.....+
T Consensus 3 lt~~q~~vL~~l~~~~~--~--~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~~ 56 (62)
T PF12802_consen 3 LTPSQFRVLMALARHPG--E--ELTQSELAERLGISKSTVSRIVKRLEKKGLVERERD 56 (62)
T ss_dssp STHHHHHHHHHHHHSTT--S--GEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE-
T ss_pred cCHHHHHHHHHHHHCCC--C--CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 78999999999977544 2 456566666778999999999999999999776544
No 65
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=26.11 E-value=3.6e+02 Score=25.47 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=54.4
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCCCCCCccceeecCCccccchhhhH
Q 047572 406 VGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIE 485 (595)
Q Consensus 406 ~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~~~~~r~v~AC~G~~~C~~a~~e 485 (595)
.|.|+.+.+..||+.. +|+..+|..+..-.. -|...+ .....+..|.|. .|... .
T Consensus 36 ~G~Ip~e~~~~iA~~l-------------------~v~~~~V~~vatFY~--~f~~~p-~Gk~~I~VC~~~-~C~~~--G 90 (156)
T PRK05988 36 FGYVPEDAVPVIAEAL-------------------NLSRAEVHGVITFYH--DFRTHP-PGRHVLKLCRAE-ACQAM--G 90 (156)
T ss_pred cCCCCHHHHHHHHHHh-------------------CCCHHHHHHHHHHhh--ccCCCC-CCCEEEEEeCCc-hhhcC--C
Confidence 3567777666666542 477777777766332 222222 124567899997 67653 3
Q ss_pred HHHHHHHHHHHHHhhh---cCCCCceEeeecCCCCCccc
Q 047572 486 TKARALKVTKEVERLV---DVTKPVRMHWTGCPNSCAQV 521 (595)
Q Consensus 486 t~~~a~~l~~~l~~~~---~lp~~~kI~iSGCpn~Ca~~ 521 (595)
+.++...+.+.|.-.. ..+.+|++.-+.|-..|++.
T Consensus 91 ~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C~~a 129 (156)
T PRK05988 91 GDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLCACS 129 (156)
T ss_pred HHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCC
Confidence 3455555555443111 23456999999999999754
No 66
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=25.04 E-value=75 Score=34.43 Aligned_cols=39 Identities=21% Similarity=0.443 Sum_probs=27.9
Q ss_pred EcCCccc-CHHHHHHHHHHHHHhCCCeEEEcCCCceEeec
Q 047572 403 HIPVGRV-QADDMDELARLADAYGSGELRLTVEQNIIIPN 441 (595)
Q Consensus 403 ~vp~Grl-~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~ 441 (595)
+-|.||+ +.++|++|++||++||.-.|-=--+|.|.+.|
T Consensus 168 HNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g 207 (388)
T COG1168 168 HNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGG 207 (388)
T ss_pred CCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccC
Confidence 5599998 99999999999999974222222445555555
No 67
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=24.85 E-value=1.9e+02 Score=27.11 Aligned_cols=110 Identities=13% Similarity=0.011 Sum_probs=64.8
Q ss_pred cCHHHHHHHHHHHHHhCCCCeEEecCCCceE--EecCCCCCHHHHHHHHHHcCCc--------------ccCCCCCCcCc
Q 047572 150 TTSEQTRYLASVIKKYGKDGCADVTTRQNWQ--IRGVVLPDVPEILKGLAQVGLT--------------SLQSGMDNVRN 213 (595)
Q Consensus 150 lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iq--l~gI~~~~l~~i~~~L~~~GL~--------------t~~a~gd~~Rn 213 (595)
++.+.+..+.++.++|+.+...-|--=+.+| +.+|+.+.+..+.+.| |++ .....|. ..
T Consensus 2 ~~~~~~~~~~~i~~~~~~~~~~ll~~L~~vQ~~~g~ip~~~~~~iA~~l---~v~~~~v~~v~tFY~~f~~~p~gk--~~ 76 (154)
T PRK07539 2 LSAEELAAIEREIAKYPRPRSAVIPALKIVQEQRGWVPDEAIEAVADYL---GMPAIDVEEVATFYSMIFRQPVGR--HV 76 (154)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHh---CcCHHHHHHHHHHHhhhCcCCCCC--EE
Confidence 4667777889999999732111111112222 6788888888887776 332 1122232 23
Q ss_pred eecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCc
Q 047572 214 PVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEH 271 (595)
Q Consensus 214 I~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~ 271 (595)
|..|-+. .| ...-+..+.+.|.+.+.- .+..+....+|.+.-++|--.|..
T Consensus 77 I~VC~g~-~C--~~~Ga~~l~~~l~~~L~i----~~g~tt~dg~~~l~~~~ClG~C~~ 127 (154)
T PRK07539 77 IQVCTST-PC--WLRGGEAILAALKKKLGI----KPGETTADGRFTLLEVECLGACDN 127 (154)
T ss_pred EEEcCCc-hH--HHCCHHHHHHHHHHHhCC----CCCCcCCCCeEEEEEccccCccCC
Confidence 6688764 23 233456777777776641 111223467899999999999964
No 68
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=23.97 E-value=1.1e+02 Score=26.14 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=25.3
Q ss_pred eEEEEEecCCCccCHHHHHHHHHHHHHhC
Q 047572 138 RFMMRLKLPNGVTTSEQTRYLASVIKKYG 166 (595)
Q Consensus 138 ~fmvRvripgG~lt~~Qlr~la~iA~~yG 166 (595)
.++|-++-|+|.++.+|...+..+.+. |
T Consensus 63 ~~~iEvK~p~~~ls~~Q~~~~~~l~~~-G 90 (100)
T PF08774_consen 63 FLFIEVKGPGDRLSPNQKEWIDKLREA-G 90 (100)
T ss_pred EEEEEEcCCCCCcCHHHHHHHHHHHHC-C
Confidence 799999999999999999999888664 5
No 69
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=23.05 E-value=49 Score=30.16 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=38.3
Q ss_pred ceEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHH
Q 047572 507 VRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADIL 579 (595)
Q Consensus 507 ~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll 579 (595)
--+.+.|||-.|+---++.-|+... |++.+- +--+.+.+...+..|++..++..|.
T Consensus 69 rIlalDGCp~~Catk~l~~AGv~~D------------~~l~it-----dlGikK~~~~D~~~edv~kv~~~i~ 124 (135)
T COG4273 69 RILALDGCPLRCATKCLAEAGVQAD------------VHLTIT-----DLGIKKTYPSDCKDEDVEKVARTIK 124 (135)
T ss_pred ceEEecCChHHHHHHHHHHhcccee------------EEEEeh-----hcccccCCCCCCCHHHHHHHHHHHH
Confidence 4578999999999887777676642 555552 1123455666788888887776655
No 70
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=21.49 E-value=1.4e+02 Score=32.44 Aligned_cols=91 Identities=18% Similarity=0.304 Sum_probs=59.4
Q ss_pred hhhhcccCCcccccccchHHHHhhhhhhcccccCCchhHHHHHhhcccceecccCCCeEEEEEecCCCccCHHHHHHHHH
Q 047572 81 EKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLAS 160 (595)
Q Consensus 81 E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~ 160 (595)
+.+..|.+.++-.|. ++...-.+... ...++.++++...-.|+|. .- | +|++|...|
T Consensus 305 a~W~~El~~Mr~Ri~----~mR~~lv~~L~-~~~~~~~f~~i~~Q~GMFs----------y~-----G-ls~~QV~rL-- 361 (396)
T COG1448 305 AEWEQELEEMRQRIL----EMRQALVDALK-ALGAPRNFDFIISQRGMFS----------YT-----G-LSPEQVDRL-- 361 (396)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHH-hhCCCcccchHhhcCceee----------cC-----C-CCHHHHHHH--
Confidence 456667776666542 22221111111 2234566766665555553 11 3 899998765
Q ss_pred HHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHc
Q 047572 161 VIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQV 199 (595)
Q Consensus 161 iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~ 199 (595)
-++|| |-++.-+.|-+-||...+++.+.+++.++
T Consensus 362 -ree~~----IY~v~sGRi~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 362 -REEFG----IYLVASGRINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred -HHhcc----EEEecCCeeeeccCChhhHHHHHHHHHhh
Confidence 47897 68888889999999999999999988764
No 71
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=21.30 E-value=99 Score=35.76 Aligned_cols=42 Identities=31% Similarity=0.535 Sum_probs=32.2
Q ss_pred HHHhhcccceecccCCCeEEEEE-------------ecCCCccCHHHHHHHHHHHHH
Q 047572 121 VRLKWLGLFHRRKHHYGRFMMRL-------------KLPNGVTTSEQTRYLASVIKK 164 (595)
Q Consensus 121 ~rlk~~G~y~~~~~~~~~fmvRv-------------ripgG~lt~~Qlr~la~iA~~ 164 (595)
-|+||.+||.- .=+..||||| +-|.|....+||..|-+-+.+
T Consensus 38 ERlrFL~I~ss--NLDEFfmVRvAgLk~qi~~~~~~~~~dg~tp~~qL~~I~~~~~~ 92 (696)
T COG0855 38 ERLRFLAIFSS--NLDEFFMVRVAGLKRQIEAGIEQRSPDGLTPREQLGRIQERVLK 92 (696)
T ss_pred HHHHHHhhhhc--CccceeeeehHhHHHHHhcCcCcCCCCCCCHHHHHHHHHHHHHH
Confidence 38999999963 3468999997 357888888998888665443
No 72
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=21.08 E-value=88 Score=30.46 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCceecCCC
Q 047572 176 RQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPL 219 (595)
Q Consensus 176 Rq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ 219 (595)
+||+||.|...|-+.++ +.|++-|+.+....|... |++|-+
T Consensus 35 iQ~vQ~~g~~~Et~~D~-er~q~yGf~S~ppaGse~--vvv~lG 75 (203)
T COG4384 35 IQNVQLSGLAGETLQDL-ERLQEYGFASVPPAGSEA--VVVPLG 75 (203)
T ss_pred EEEEEEecCCcchhhhh-HHHHhcCcccCCCCCCeE--EEEecC
No 73
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=20.40 E-value=40 Score=28.97 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=43.5
Q ss_pred ccCHHHHHHHHHHHHH-hCCC-CeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccC
Q 047572 149 VTTSEQTRYLASVIKK-YGKD-GCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQ 205 (595)
Q Consensus 149 ~lt~~Qlr~la~iA~~-yG~~-G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~ 205 (595)
-+++.|++.|..++++ ||.. ....+|..+=-.+-|+..+.+-.++..|++.|+....
T Consensus 22 ~l~~r~~~vLl~L~~~~~G~~~~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~ 80 (95)
T TIGR01610 22 DLSGREFRVLLAIIRLTYGWNKKQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQ 80 (95)
T ss_pred CCCHHHHHHHHHHHHHHhCccccCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeee
Confidence 4899999999999984 4520 2345555544558889999999999999999997653
No 74
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=20.06 E-value=2.3e+02 Score=25.24 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=42.5
Q ss_pred EEecCCCccCHHHHHHHHHHHHHhCCCCeEEec-CCCceEEecCCCCCHHHHHHHH
Q 047572 142 RLKLPNGVTTSEQTRYLASVIKKYGKDGCADVT-TRQNWQIRGVVLPDVPEILKGL 196 (595)
Q Consensus 142 RvripgG~lt~~Qlr~la~iA~~yG~~G~l~iT-tRq~iql~gI~~~~l~~i~~~L 196 (595)
+++.--|.+.+.-++.+-+||+.|..+|+|+.- +|...+|| ++.+=-+.+.+.+
T Consensus 34 ~l~~~KG~iP~~F~~~c~dIa~~~~~~G~ik~~r~~~g~rL~-fS~~ip~~v~Qri 88 (108)
T PF12321_consen 34 RLRVHKGHIPPGFLHNCRDIARRYPFRGTIKVYRQRGGVRLH-FSRSIPKKVQQRI 88 (108)
T ss_pred cEEEEcCCCChHHHHHHHHHHHhCCCcEEEEEEEeCCceEEE-EeCCCCHHHhhhh
Confidence 556667889999999999999999988999985 69999999 5654444444444
Done!