Query 047572
Match_columns 595
No_of_seqs 366 out of 2327
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 21:56:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b0g_A NII3, nitrite reductase 100.0 4E-118 1E-122 1000.4 40.4 561 31-595 28-591 (591)
2 2akj_A Ferredoxin--nitrite red 100.0 3E-117 1E-121 994.0 39.8 556 32-594 49-608 (608)
3 1zj8_A Probable ferredoxin-dep 100.0 2E-103 7E-108 879.8 46.1 510 56-588 15-548 (566)
4 4g38_A SIR-HP, sirhp, sulfite 100.0 3E-101 1E-105 860.4 30.0 483 75-586 13-541 (570)
5 1aop_A Sirhp, sulfite reductas 100.0 1E-89 3.6E-94 759.7 32.6 433 136-588 4-470 (497)
6 3or1_B Sulfite reductase beta; 100.0 2.7E-40 9.2E-45 353.2 19.7 218 133-360 57-354 (386)
7 3mm5_B Sulfite reductase, diss 100.0 7.9E-39 2.7E-43 340.1 20.5 225 127-362 39-339 (366)
8 3mm5_A Sulfite reductase, diss 100.0 4.9E-39 1.7E-43 344.6 18.2 214 137-360 94-379 (418)
9 3or1_A Sulfite reductase alpha 100.0 1.2E-37 4.2E-42 333.6 20.3 214 137-360 96-396 (437)
10 3or1_B Sulfite reductase beta; 100.0 1.6E-33 5.4E-38 300.9 16.9 204 386-591 51-335 (386)
11 3mm5_A Sulfite reductase, diss 100.0 2.1E-32 7.3E-37 293.2 17.4 194 396-590 94-359 (418)
12 3or1_A Sulfite reductase alpha 100.0 3.3E-32 1.1E-36 291.7 17.2 195 396-591 96-377 (437)
13 1zj8_A Probable ferredoxin-dep 100.0 2.5E-32 8.7E-37 305.3 16.7 219 125-356 342-566 (566)
14 2akj_A Ferredoxin--nitrite red 100.0 3.4E-32 1.2E-36 305.3 16.1 194 122-328 396-595 (608)
15 3mm5_B Sulfite reductase, diss 100.0 2E-32 6.9E-37 290.9 12.9 201 388-590 39-317 (366)
16 3b0g_A NII3, nitrite reductase 100.0 2.9E-32 1E-36 305.5 13.2 193 122-327 379-576 (591)
17 1aop_A Sirhp, sulfite reductas 100.0 6.2E-31 2.1E-35 290.3 15.4 211 126-356 273-488 (497)
18 4g38_A SIR-HP, sirhp, sulfite 100.0 4.3E-30 1.5E-34 286.8 13.5 208 126-353 346-558 (570)
19 3noy_A 4-hydroxy-3-methylbut-2 97.5 5.6E-05 1.9E-09 78.2 4.6 92 468-584 269-361 (366)
20 3noy_A 4-hydroxy-3-methylbut-2 97.4 0.00035 1.2E-08 72.3 8.2 111 187-331 250-361 (366)
21 4g9p_A 4-hydroxy-3-methylbut-2 96.8 0.003 1E-07 66.4 8.9 101 468-585 292-400 (406)
22 4g9p_A 4-hydroxy-3-methylbut-2 95.5 0.012 4.2E-07 61.8 5.4 123 188-332 274-400 (406)
23 3i9v_2 NADH-quinone oxidoreduc 33.3 1.2E+02 0.0041 28.0 7.9 90 407-521 39-131 (181)
24 3fst_A 5,10-methylenetetrahydr 26.9 2.4E+02 0.0082 28.2 9.4 91 145-267 61-154 (304)
25 3apt_A Methylenetetrahydrofola 24.1 3.1E+02 0.011 27.4 9.6 100 146-268 52-152 (310)
26 1gyx_A YDCE, B1461, hypothetic 20.5 1E+02 0.0035 23.8 4.1 47 140-191 2-53 (76)
No 1
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=100.00 E-value=3.8e-118 Score=1000.42 Aligned_cols=561 Identities=84% Similarity=1.374 Sum_probs=499.1
Q ss_pred ceeeccCCCcCCCCcCCCccccccccCccccccCceeeecccccCCCChhhhhhcccCCcccccccc--hHHHHhhhhhh
Q 047572 31 WRVHATTPAVAPVTTTSAPEVDAERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENG--IEDLAKLSMEE 108 (595)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~E~~K~~~~~l~~~~~~~--i~~~a~~~~~~ 108 (595)
.|++++|++++|+ .|++++|+|.+++||+.+++|||+++++.++|+|++|++|.+++||+++ .+ |++|++.++++
T Consensus 28 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~E~~K~~~~~l~~~--~~~~i~~~a~~~~~~ 104 (591)
T 3b0g_A 28 VKLHATPPSVAAP-PTGAPEVAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLF--MENGIEELAKIPIEE 104 (591)
T ss_dssp --------------------CCGGGGSCCEEEETTEEEECGGGCTTCCHHHHHHHHSCTTHHH--HTCHHHHHTTSCHHH
T ss_pred HhhhcCCCccCCC-cccchhhhhhcccccccccCCccccCcccccCCChhhhhhhhcCCcccc--hhhhHHHHhhccccc
Confidence 4668888777775 3467899999999999999999999878889999999999999999999 55 89999999888
Q ss_pred cccccCCchhHHHHHhhcccceecccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhC-CCCeEEecCCCceEEecCCCC
Q 047572 109 IDQAKNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYG-KDGCADVTTRQNWQIRGVVLP 187 (595)
Q Consensus 109 ~~~~~~~~~d~~~rlk~~G~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG-~~G~l~iTtRq~iql~gI~~~ 187 (595)
+++.+|+++|++.|+||+|+|+|++++++.||||||+|+|.+|++||+.||+||++|| + |++++|||||||||||.++
T Consensus 105 ~~~~~~~~~d~~~r~k~~G~y~~~~~~~~~~mvRvr~PgG~lt~~qlr~ladia~~yg~~-G~i~~TtRq~iql~gi~~~ 183 (591)
T 3b0g_A 105 IDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKE-GCADITTRQNWQIRGVVLP 183 (591)
T ss_dssp HTTSHHHHHHHHTGGGGGTEEECTTTSTTEEEEECBCGGGEEEHHHHHHHHHHHHHTGGG-CEEEECTTSCEEEEEEEGG
T ss_pred cccccCCHHHHHHHhhhceeEEeccCCCCeEEEEecCCCceECHHHHHHHHHHHHHhCCC-CeEEEeCCccEEEecCCHH
Confidence 8777778999987999999999877777899999999999999999999999999999 5 9999999999999999999
Q ss_pred CHHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCC
Q 047572 188 DVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHD 267 (595)
Q Consensus 188 ~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~ 267 (595)
++++++++|.++||++.++|||++|||++||++++|+++++|+++++++|.++|.+++.+++.+.+||+||||+||||++
T Consensus 184 ~l~~i~~~L~~~gl~~~~~~gd~~Rnv~~~p~~g~c~~~~~D~~~~a~~l~~~l~~~~~~~~~~~~LPrKfKiavsgc~~ 263 (591)
T 3b0g_A 184 DVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHD 263 (591)
T ss_dssp GHHHHHHHHHHTTCBCTTCSSSSBCCCBCCTTTTTCTTCSSCCHHHHHHHHHHHHTTTTCCGGGSCCSSCBCEEECCCTT
T ss_pred HHHHHHHHHHHcCCCCCcCccCCCCCeEeCCCcccCcchhhhHHHHHHHHHHHHhhcccCCccccccCcceEEEEccCcc
Confidence 99999999999999999999999999999999999999999999999999999987666788899999999999999999
Q ss_pred CCCcCccCceEEEeEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHH
Q 047572 268 LYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLI 347 (595)
Q Consensus 268 ~c~~~~~~DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li 347 (595)
+|+.+.+|||||+++.++|..||+|+|||++|..++..+.++..||++|++++++++|+++|+++|+|.+|+++||+|+|
T Consensus 264 ~c~~~~~~Dig~i~~~~~g~~Gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~~~~ai~~~~~~~G~r~~R~kaR~~~li 343 (591)
T 3b0g_A 264 LYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLI 343 (591)
T ss_dssp CTTCGGGSSEEEEEEEETTEEEEEEEECCEECSSCEECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGCSHHHHH
T ss_pred cccccccceEEEEEEEcCCCceEEEEEccccCCCCcccceeeccccCHHHHHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence 99999999999999998888899999999999765567888889999999999999999999999999999999999999
Q ss_pred HhhChHHHHHHHHhhCCCCCCCCCCCchhhhcccCCCCccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCC
Q 047572 348 DELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSG 427 (595)
Q Consensus 348 ~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g 427 (595)
++||+++|+++|++++...+|.+..+..++...|.+.+|+||++|+++|+|+|++++|+|+++++||+.||+||++||.|
T Consensus 344 ~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~~qk~~g~~~v~v~~p~Grlt~~~Lr~LadiAe~yg~g 423 (591)
T 3b0g_A 344 DELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSG 423 (591)
T ss_dssp HHHCHHHHHHHHHHTSGGGCCBCCCSCCSCCSSCCCCCCSEEEECSSTTEEEEEECCGGGEECHHHHHHHHHHHHHHSSS
T ss_pred HhccHHHHHHHHHHHhccCcCCCCccccccccccccccccceeecCcCCeEEEEEeCCCcCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999982246655443333233588889999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCCCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCc
Q 047572 428 ELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPV 507 (595)
Q Consensus 428 ~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~ 507 (595)
++|+|+||||+|++|+.++++++++++...++...+++.+++++||+|+++|+++++||++++..|.++|+..+++|.++
T Consensus 424 ~irlT~~QnI~l~~v~~e~l~~l~~el~~~~~~~~~g~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~~~lp~k~ 503 (591)
T 3b0g_A 424 EIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPV 503 (591)
T ss_dssp EEEECTTSCEEEEEEEGGGHHHHTTCGGGGTSCSSCCHHHHTCEECCGGGTCTTCSSCCHHHHHHHHHHHHHHEECCSCC
T ss_pred eEEECCCCceEeCCCCHHHHHHHHHHHHhccCCCCCCCCccceecCCCcccCcchhhhHHHHHHHHHHHHHHhcCCCcce
Confidence 99999999999999999999999999876777767788899999999999999999999999999999999877899999
Q ss_pred eEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHHhHh
Q 047572 508 RMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVL 587 (595)
Q Consensus 508 kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~~~ 587 (595)
+|+||||||+|++|+++||||+|...++.+|+.+++|+||+||+.|.++++|+.+..+|++++|+++++.+|.++|++.+
T Consensus 504 kI~iSGCpn~C~~~~~aDIG~vG~~~~~~~G~~~~gy~v~lGG~~g~~~rlg~~l~~~v~~eev~~~i~~ll~~~y~~~~ 583 (591)
T 3b0g_A 504 RMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVP 583 (591)
T ss_dssp CEEEESSTTCTTCGGGSSEEEEEEEEECTTSCEEEEEEEEECCBCSSSCBCCEEEEEEEEGGGHHHHHHHHHHHHSCCEE
T ss_pred EEEEeCCCCcccCcccccEEEEEEeecCCCCccccceEEEECCcCCCCCchhhHHhcCCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999976546788889999999999999999999999999999999999999998999998
Q ss_pred hcccccCC
Q 047572 588 REREEAED 595 (595)
Q Consensus 588 ~~r~~~~~ 595 (595)
+++++.|+
T Consensus 584 ~~~~~~~~ 591 (591)
T 3b0g_A 584 REREETED 591 (591)
T ss_dssp C-------
T ss_pred cccccCCC
Confidence 88888775
No 2
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1
Probab=100.00 E-value=3.2e-117 Score=993.98 Aligned_cols=556 Identities=82% Similarity=1.354 Sum_probs=495.4
Q ss_pred eeeccCCCcCCCCcCCCccccccccCccccccCceeeecccccCCCChhhhhhcccCCcccccccc--hHHHHhhhhhhc
Q 047572 32 RVHATTPAVAPVTTTSAPEVDAERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENG--IEDLAKLSMEEI 109 (595)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~E~~K~~~~~l~~~~~~~--i~~~a~~~~~~~ 109 (595)
|+ ++|++++|+ +++++++.+++||+.+++|||+|+++.++|+|++|+||.+++||+++ .+ |++|++.+++++
T Consensus 49 ~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~E~~K~~~~~l~~~--~~~~i~~~a~~~~~~~ 122 (608)
T 2akj_A 49 KA-VSPAAETAA---VSPSVDAARLEPRVEERDGFWVLKEEFRSGINPAEKVKIEKDPMKLF--IEDGISDLATLSMEEV 122 (608)
T ss_dssp -----------------------CCSCSEEEETTEEEECGGGCSSCCHHHHHHHHSCTTHHH--HTCHHHHHTTCCHHHH
T ss_pred cc-cCCCCCCCC---cchhhhcccccccccccCCccccCcccccCCChhhhhhhhcCCcccc--hhhhHHHHhhcccccc
Confidence 55 555666666 78999999999999999999999878889999999999999999999 55 889999998888
Q ss_pred ccccCCchhHHHHHhhcccceecccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhC-CCCeEEecCCCceEEecCCCCC
Q 047572 110 DQAKNTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYG-KDGCADVTTRQNWQIRGVVLPD 188 (595)
Q Consensus 110 ~~~~~~~~d~~~rlk~~G~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG-~~G~l~iTtRq~iql~gI~~~~ 188 (595)
++.+++++|+..|+||+|+|+|+++++++||||||+|+|++|++||+.||+||++|| + |++++|||||||||||.+++
T Consensus 123 ~~~~~~~~d~~~rlk~~G~y~r~~~~~~~~mvRvr~PgG~lt~~qlr~ladiA~kyg~~-G~i~lTtRq~iql~gi~~e~ 201 (608)
T 2akj_A 123 DKSKHNKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKD-GCADVTTRQNWQIRGVVLPD 201 (608)
T ss_dssp TTSHHHHHHHHTGGGGGTEEECHHHHTTCEEEECCCGGGEEEHHHHHHHHHHHHTTGGG-CCEEECTTSCEEEEEECGGG
T ss_pred ccccCCHHHHHHHHhhcceeeeccCCCceEEEEecCCCcccCHHHHHHHHHHHHHhCCC-CeEEEecCcceEEcCCCHHH
Confidence 777778999977999999999877777899999999999999999999999999999 5 99999999999999999999
Q ss_pred HHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCC
Q 047572 189 VPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDL 268 (595)
Q Consensus 189 l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~ 268 (595)
+++++++|.++||++.++|||++|||++||++++|+++++|+++++++|.++|.++..+++.+.+||+||||+|+||+++
T Consensus 202 l~~i~~~L~~~Gl~~~~~~gd~~Rnv~~~p~~g~c~~~~~D~~~~a~~l~~~l~~~~~~~~~~~~LPrKfKiavsgc~~~ 281 (608)
T 2akj_A 202 VPEIIKGLESVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDL 281 (608)
T ss_dssp HHHHHHHHHTTTCCCTTCSSSSBCCCBCCTTTTTCTTCSSCCHHHHHHHHHHHTTTTTCCGGGSCCSSCBCEEECCCTTC
T ss_pred HHHHHHHHHHcCCCCCCCcCCCCCCeEeCCCcccCcchhhhHHHHHHHHHHHHhhcccCCccccccCcceEEEeccCccc
Confidence 99999999999999999999999999999999999999999999999999999876556788999999999999999999
Q ss_pred CCcCccCceEEEeEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHH
Q 047572 269 YEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLID 348 (595)
Q Consensus 269 c~~~~~~DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~ 348 (595)
|+++++|||||+++.++|..||+|+|||++|..++..+.++..||+++++++++++|+++|+++|+|.+|+++||+|+|+
T Consensus 282 c~~~~~~Dig~i~~~~~g~~Gf~v~vGGg~g~~~~~~~~~l~~~v~~eev~~~~~ai~~~~~~~G~r~~R~~aRl~~li~ 361 (608)
T 2akj_A 282 YEHPHINDLAYMPATKNGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLID 361 (608)
T ss_dssp TTCGGGSSEEEEEEESSSSEEEEEEECCEECSSCEECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGCSHHHHHH
T ss_pred ccccccceEEEEEEEeCCccEEEEEECcccCCCCcccceecccccCHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHH
Confidence 99999999999999888888999999999997655677888899999999999999999999999999999999999999
Q ss_pred hhChHHHHHHHHhhCCCCCCCCCCCchhhhcccCCCCccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCe
Q 047572 349 ELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGE 428 (595)
Q Consensus 349 ~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~ 428 (595)
+||+++|+++|++++.+.++.+..+..++...|.+.+|+||++|+++|+|+|++++|+|+++++||+.||+||++||.|+
T Consensus 362 ~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~Grlt~~qLr~LadiAe~yg~G~ 441 (608)
T 2akj_A 362 ELGMEAFRGEVEKRMPEQVLERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGE 441 (608)
T ss_dssp HHCHHHHHHHHHTTSTTSCCCCCCSCBCSCSSCCCCCCBEEEECSSTTEEEEEECCGGGEECHHHHHHHHHHHHHHSSSE
T ss_pred hhchHHHHHHHHHHhccCCCCcCccccccccccccccccceeecCcCCeEEEEEeCCCccCCHHHHHHHHHHHHHhCCCe
Confidence 99999999999999822566655433332335888999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCceEeeccChhhHHHHHHhhhc-CCCCCCCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCc
Q 047572 429 LRLTVEQNIIIPNVDNSKLEALLKEPLL-EKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPV 507 (595)
Q Consensus 429 irlT~~Qni~l~~I~~~~v~~l~~el~~-~g~~~~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~ 507 (595)
+|+|+||||+|++|+.++++++++++.. .++...+++.+++++||+|+++|+++++||++++..|.++|+..+.+|.+|
T Consensus 442 irlT~~QnIil~~v~~e~l~~l~~el~~~~~~~~~~g~~~r~i~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~~~~lp~k~ 521 (608)
T 2akj_A 442 LRLTVEQNIIIPNVENSKIDSLLNEPLLKERYSPEPPILMKGLVACTGSQFCGQAIIETKARALKVTEEVQRLVSVTRPV 521 (608)
T ss_dssp EEEETTTEEEEEEEETTTHHHHTTSHHHHTTSCSSCCTTTTEEEECCGGGTCTTCSSCCHHHHHHHHHHHHHHEECSSCC
T ss_pred EEECCCCCeEECCCCHHHHHHHHHHHhhhcccCCCCCccccceeeCCCCCCCCchhhhHHHHHHHHHHHHHHhcCCCcce
Confidence 9999999999999999999999998766 677777888999999999999999999999999999999999877889999
Q ss_pred eEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHHhHh
Q 047572 508 RMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVL 587 (595)
Q Consensus 508 kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~~~ 587 (595)
+||||||||+|++|+++||||+|...++.+|+.+++|+||+||+.|.++++|+.+..+|++++|+++++.+|..+|++.+
T Consensus 522 kI~vSGCpn~Ca~~~iaDIGlvG~~~~~~~G~~~~gy~v~lGG~~g~~~rlg~~l~~~v~~eev~~~l~~ll~~~y~~~~ 601 (608)
T 2akj_A 522 RMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVFVGGRIGSDSHLGDIYKKAVPCKDLVPVVAEILINQFGAVP 601 (608)
T ss_dssp EEEEESSTTCTTCGGGSSEEEEEEEEECTTCCEEEEEEEEECCBCSTTCBCCEEEEEEEETTTHHHHHHHHHHHHSCCEE
T ss_pred EEEEeCCCCccccccccceEEEEEeeccCCCcccceEEEEECCcCCCCCchhhHhhcCCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999976556888889999999999999999999999999999999999999988999988
Q ss_pred hcccccC
Q 047572 588 REREEAE 594 (595)
Q Consensus 588 ~~r~~~~ 594 (595)
+++++.|
T Consensus 602 ~~~~~~~ 608 (608)
T 2akj_A 602 REREEAE 608 (608)
T ss_dssp C------
T ss_pred cccccCC
Confidence 8776654
No 3
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
Probab=100.00 E-value=2e-103 Score=879.82 Aligned_cols=510 Identities=30% Similarity=0.510 Sum_probs=452.2
Q ss_pred cCccccccCceeeecccccCCCChhhhhhcccCCcccccccchH-HHHhhhhhhcccccCCchhHHHHHhhcccceeccc
Q 047572 56 LEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIE-DLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKH 134 (595)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~E~~K~~~~~l~~~~~~~i~-~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~~~~~ 134 (595)
.+|+....+|+|.+. .++++|++|++|.+|+||+++ +.|. .|++.++ ++++++|++.|+||||+|+|+++
T Consensus 15 ~~~~~~~~~~~~~~~--~~~~~~~~E~~K~~~~~l~~~--~~i~~~~~~~~~-----~~i~~~d~~~~~k~~G~y~q~~~ 85 (566)
T 1zj8_A 15 ARPAKARNEGQWALG--HREPLNANEELKKAGNPLDVR--ERIENIYAKQGF-----DSIDKTDLRGRFRWWGLYTQREQ 85 (566)
T ss_dssp ------CCCCCGGGT--CCSCCSHHHHHGGGSCGGGHH--HHHHHTHHHHCG-----GGSCHHHHHTGGGGGTEEEEECT
T ss_pred ccccCCCCCCceecC--CCCCCChHHHHhhhcchHHHH--HHHHHHHhhcCC-----CCCCHHHHhhhheEEEeeeecCC
Confidence 356666789999985 678999999999999999887 7674 4787764 55668999779999999998765
Q ss_pred ---------------CCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHc
Q 047572 135 ---------------HYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQV 199 (595)
Q Consensus 135 ---------------~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~ 199 (595)
++++||||||+|+|.+|++||+.||+||++|| +|++++|||||||||||.++++++++++|.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~mvRvr~p~G~lt~~qlr~la~ia~~yg-~g~i~~TtRqniql~gi~~~~l~~i~~~L~~~ 164 (566)
T 1zj8_A 86 GYDGTWTGDDNIDKLEAKYFMMRVRCDGGALSAAALRTLGQISTEFA-RDTADISDRQNVQYHWIEVENVPEIWRRLDDV 164 (566)
T ss_dssp TCCGGGCSGGGHHHHEEEEEEEEEBCGGGEECHHHHHHHHHHHHHHS-TTEEEECTTSCEEEEEECGGGHHHHHHHHHTT
T ss_pred ccccccccccccccccCceEEEEecCCCCcCCHHHHHHHHHHHHHHC-CCeEEEECCccEEEecCCHHHHHHHHHHHHHc
Confidence 24579999999999999999999999999999 59999999999999999999999999999999
Q ss_pred CCcccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEE
Q 047572 200 GLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAY 279 (595)
Q Consensus 200 GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~ 279 (595)
||++.++|||++|||++||++++|..+++|+++++.+|.+.+.+ ++.+.+||+||||+||||++.| +.++||||
T Consensus 165 gl~~~~~~G~~~Rnv~~~p~~~~~~~~~~D~~~~~~~l~~~~~~----~~~~~~LP~KfKiavsgc~~~~--~~~~Dig~ 238 (566)
T 1zj8_A 165 GLQTTEACGDCPRVVLGSPLAGESLDEVLDPTWAIEEIVRRYIG----KPDFADLPRKYKTAISGLQDVA--HEINDVAF 238 (566)
T ss_dssp TCBCTTSSSSSEEEEEECTTTTTCTTCSCCTHHHHHHHHHHHTT----SGGGSSCSSCEEEEEESSSCSC--GGGSSEEE
T ss_pred CCCCCCCcCCCCCCeecCcccccCcccccCcHHHHHHHHHHHcC----CcccccCCcceEEEEeccCCcc--cccCcEEE
Confidence 99999999999999999999999999999999999999998875 6777899999999999999966 46899999
Q ss_pred EeEeec-CceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHH
Q 047572 280 MPATKD-GRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAE 358 (595)
Q Consensus 280 v~~~~~-g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~ 358 (595)
+++.++ +..||+|+|||++|..+ ..+..+..||+++++++++++|+++|+++|+|.+|+++||+|+|++||+++|+++
T Consensus 239 i~~~~~~~~~G~~v~vGG~~g~~p-~~a~~l~~~v~~e~v~~~~~ai~~~~~~~G~R~~r~~aRl~~li~~~G~e~f~~~ 317 (566)
T 1zj8_A 239 IGVNHPEHGPGLDLWVGGGLSTNP-MLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLRAKARLKFLIKDWGIAKFREV 317 (566)
T ss_dssp EEEEETTTEEEEEEEECCBCSSSC-BCCEEEEEEECGGGHHHHHHHHHHHHHHHSCCSSGGGCSHHHHHHHHCHHHHHHH
T ss_pred EEEEecCCCceEEEEEcccCCCCC-cchhhhccCCCHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHCHHHHHHH
Confidence 999764 45899999999999655 6778888899999999999999999999999999999999999999999999999
Q ss_pred HH-hhCCCCCCCCCCCchhhhcccCCCCccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCce
Q 047572 359 VV-KRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNI 437 (595)
Q Consensus 359 v~-~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni 437 (595)
|+ ++++ .++...+ .. .+.+...++.||++|+ +|+|+|++++|+|++++++|+.||+||++||.|+||+|++|||
T Consensus 318 v~~~~~~-~~~~~~~-~~--~~~~~~~~~~G~~~qk-~G~~~v~v~~p~G~lt~~~l~~Ladiae~yg~g~irlT~~qni 392 (566)
T 1zj8_A 318 LETEYLK-RPLIDGP-AP--EPVKHPIDHVGVQRLK-NGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKL 392 (566)
T ss_dssp HHHHTTS-SCCEECC-CC--CCCSSCCCCCEEEECT-TSSEEEEEBCBTTEEEHHHHHHHHHHHHHHTCCCEEECTTSCE
T ss_pred HHHHhcc-cccccCC-Cc--cCccccCCCcceeecc-CCcEEEEEeCCCCccCHHHHHHHHHHHHHhCCCEEEECCCCcE
Confidence 99 6665 5554321 11 1225567899999998 7999999999999999999999999999999999999999999
Q ss_pred EeeccChhhHHHHHHhhhcCCCCCCCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhh-----cCCCCceEeee
Q 047572 438 IIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLV-----DVTKPVRMHWT 512 (595)
Q Consensus 438 ~l~~I~~~~v~~l~~el~~~g~~~~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~-----~lp~~~kI~iS 512 (595)
+|++|+.+++++++++|...|+...++..+++++||+|+++|+++++||+.++..|+++|++.+ .+|.+|+||||
T Consensus 393 il~~v~~~~l~~i~~~L~~~Gl~~~~s~~~r~~~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~~~~~~~~~ki~vS 472 (566)
T 1zj8_A 393 VILDIPDALLDDLIAGLDALGLQSRPSHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNIN 472 (566)
T ss_dssp EEEEECHHHHHHHHHHHHHTTCBSSCCHHHHHEEECCBTTTCTTCSSBCHHHHHHHHHHHHHHTHHHHTTCCSCCCEEEE
T ss_pred EEecCCHHHHHHHHHHHHHcCCCCCCCCcccccccCCCcccCccchhhHHHHHHHHHHHHHHHhhccccccCCCceEEEe
Confidence 9999999999999999988888776666789999999999999999999999999999998764 37889999999
Q ss_pred cCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCCCccccccc-CCCCccCHHHHHHHHHHHHHHhHhh
Q 047572 513 GCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYK-KGVPCKDLVPLVADILVEHFGAVLR 588 (595)
Q Consensus 513 GCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~-~~v~~eel~~~l~~ll~~~~~~~~~ 588 (595)
||||+|++++++||||+|...++.+|+.+++|+||+||+.|.++++|+.+. ..++.++++++|+.++ .+|.+.++
T Consensus 473 GCpN~Ca~~~~aDIGivG~~~~~~~g~~~~gy~i~lGG~~g~~~~~g~~l~~~~v~~eei~~~l~~l~-~~y~~~~~ 548 (566)
T 1zj8_A 473 GCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYIDRVV-RNFVKHRS 548 (566)
T ss_dssp SSTTCTTCGGGSSEEEEEEEEESSSSCEEEEEEEEESCBCSTTCBCCEECTTCCEETTTHHHHHHHHH-HHHHHSCC
T ss_pred cCCccchhhhhcceeEEEEeccCCCCccceeEEEEeCCCCCCCCccccccccCCCCHHHHHHHHHHHH-HHHHHhCC
Confidence 999999999999999999976655688889999999999998899999876 5689999999999988 57776443
No 4
>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=100.00 E-value=3e-101 Score=860.45 Aligned_cols=483 Identities=22% Similarity=0.379 Sum_probs=364.1
Q ss_pred CCCChhhhhhcccCCcccccccchHHHHhhhhhhcccccCCchhHHHHHhhcccceecccC------------CCeEEEE
Q 047572 75 KGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKHH------------YGRFMMR 142 (595)
Q Consensus 75 ~~~~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~~~~~~------------~~~fmvR 142 (595)
.|||++|+||.+||+|+.+|.+++.+.++ ..|+++|+ .++||||+|+|++++ .++||||
T Consensus 13 ~~l~~~E~~K~~~~~l~~~i~~~~~~~~~--------~~~~~~~~-~~~k~~G~y~Q~~r~~~~~~~~~~~~~~~~fm~R 83 (570)
T 4g38_A 13 GKLTDAERMKHESNYLRGTIAEDLNDGLT--------GGFKGDNF-LLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLR 83 (570)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred CCCChHHHHhcccccchhHHHHHHHHhhc--------CCCCHHHH-HHHhhceeeEecccccchhhhccccCcCccEEEE
Confidence 67999999999999999887655554443 34668888 599999999986543 3589999
Q ss_pred EecCCCccCHHHHHHHHHHHHHh-CCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCceecCCCCC
Q 047572 143 LKLPNGVTTSEQTRYLASVIKKY-GKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAG 221 (595)
Q Consensus 143 vripgG~lt~~Qlr~la~iA~~y-G~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag 221 (595)
||+|+|++|++||+.||+||++| | +|++|||||||||||||.++++++++++|+++||++.++|||++|||++||+.
T Consensus 84 vr~pgG~lt~~Ql~~la~iA~~y~g-~G~i~lTtRqniQl~gi~~~~~~~i~~~L~~~gl~~~~a~Gd~vRNV~~~p~p- 161 (570)
T 4g38_A 84 CRLPGGVITTKQWQAIDKFAGENTI-YGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATAWDMNRNVLCTSNP- 161 (570)
T ss_dssp EECGGGEEEHHHHHHHHHHHHHHBS-SCCEEECTTSCEECCSBC-----CHHHHHHTTTCEECCTTTCCBCCCEECSSC-
T ss_pred EecCCcccCHHHHHHHHHHHHHhCC-CCeEEEeCCceEEEecCCHHHHHHHHHHHHHcCCCCccccCCCccceEecCCc-
Confidence 99999999999999999999999 9 59999999999999999999999999999999999999999999999999852
Q ss_pred CCCCCccChHHHHHHHHHHHHhccC----------------CCCCc--cCCCCceEEEEecCCCCCCcCccCceEEEeEe
Q 047572 222 IDPEEIVDTRPYTNLLSHFITANAQ----------------GNPTV--TNLPRKWNVCVVGSHDLYEHPHINDLAYMPAT 283 (595)
Q Consensus 222 ~~~~~~~dt~~la~~l~~~~~~~~~----------------~~~~~--~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~ 283 (595)
++.....|+.++|++|+++|..... .+|.+ .+|||||||+|+||+++|+++++|||||+++.
T Consensus 162 ~~g~~~~d~~~~a~~i~~~l~~~~~~~~e~~l~~~~~~~~~~~p~~g~~~LPrKFKiavsg~~~~~~~~~~~Dig~~a~~ 241 (570)
T 4g38_A 162 YESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA 241 (570)
T ss_dssp SSGGGHHHHHHHHHHHHHHTCC-------------------------------CBCEEEECTTBCTTCGGGSSEEEEEEE
T ss_pred ccCccHHHHHHHHHHHHHhhcccchhHHHHHhccchhcccccCccccccCCCCceEEEEECCCcccccCccCcEEEEEEE
Confidence 3333456889999999888754221 13443 68999999999999999999999999999998
Q ss_pred ecCc-eeEEEEEcCcCCCcc------ccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHH
Q 047572 284 KDGR-FGFNLLVGGFFSPKR------CAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFR 356 (595)
Q Consensus 284 ~~g~-~gf~v~vGG~~g~~~------~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~ 356 (595)
++++ .||+|+|||++|+++ +..+..+ .||++|++++++++|+++|+++|+|.+|+|+||+|+|++||+++|+
T Consensus 242 ~~~~~~Gf~v~vGGg~g~~~~~~~t~p~~a~~l-~~v~~e~v~~~~~ai~~~~~~~G~r~~r~kaRlk~li~~~G~e~f~ 320 (570)
T 4g38_A 242 ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEF-GYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFK 320 (570)
T ss_dssp SSSSEEEEEEEECCBCCCCTTCTTCCCBCCEEE-EEEEGGGHHHHHHHHHHHHHHHCC-----CCSHHHHHHHHCHHHHH
T ss_pred eCCceeeEEEEEccccccccCcccCCCcccccc-CccCHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhhhHHHHH
Confidence 7665 799999999999652 3456677 5999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCchhhhcccCCCCccceeecccCCeEEEEEEcCCcccCH----HHHHHHHHHHHHhCCCeEEEc
Q 047572 357 AEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQA----DDMDELARLADAYGSGELRLT 432 (595)
Q Consensus 357 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~i~vp~Grl~a----~ql~~La~iA~~yg~g~irlT 432 (595)
++|+++++ .+++++.+..+ +...+++||++| ++|+|+|++++|+|++++ ++|+.||+||++|| |+||+|
T Consensus 321 ~~v~~~~g-~~~~~~~~~~~----~~~~d~~g~~~~-~dG~~~v~v~~~~Grl~~~~~~~~l~~La~iAe~~g-g~iRlT 393 (570)
T 4g38_A 321 AEVERRAG-IKFEPIRPYEF----TGRGDRIGWVKG-IDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK-GDFRIT 393 (570)
T ss_dssp HHHHHHHT-CCCBCCCCCCC----CBCCCCCEEEEC-STTEEEEEECCGGGEECEETTEEHHHHHHHHHHHCS-SEEEEC
T ss_pred HHHHHHhh-cccCCCCccCc----CCCccccCceec-CCCcEEEEEEecCCeecCCccHHHHHHHHHHHHHhC-CeEEEC
Confidence 99999997 67766543332 346789999987 589999999999999988 58999999999997 999999
Q ss_pred CCCceEeeccChhhHHHHHHhhhcCCCCCCCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhh---cC-CCCce
Q 047572 433 VEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLV---DV-TKPVR 508 (595)
Q Consensus 433 ~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~---~l-p~~~k 508 (595)
++|||+|.+|+.++++++++.+...|+...+++.+++++||+|+++|+++++||++++..|.++|++.+ .+ |.+++
T Consensus 394 ~~Qniil~gv~~e~l~~i~~~L~~~Gl~~~~~~~~~~v~aC~G~~~C~~a~~dt~~~a~~L~~~le~~~~~~~l~p~~ik 473 (570)
T 4g38_A 394 ANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIV 473 (570)
T ss_dssp TTSCEEEEEEEGGGHHHHHHHHHHTTTTCCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHHTTCTTCCCC
T ss_pred CCCcEEEecCCHHHHHHHHHHHHHcCCCCCCCCcccCeEECCCCCcccchhHhHHHHHHHHHHHHHHHHhhcCCCCCceE
Confidence 999999999999999999988877787766778899999999999999999999999999999988754 35 88999
Q ss_pred EeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHHhH
Q 047572 509 MHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAV 586 (595)
Q Consensus 509 I~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~~ 586 (595)
||||||||+|++|+++||||+|.. .++|+||+||+.+ ++++|+++.+.|++++++++++.++. +|.+.
T Consensus 474 i~vSGCpn~C~~~~~aDIGlvG~~--------~g~y~l~lGG~~~-~~r~g~~~~~~v~~~ei~~~l~~ll~-~y~~~ 541 (570)
T 4g38_A 474 MRVTGCPNGCGRAMLAEVGLVGKA--------PGRYNLHLGGNRI-GTRIPRMYKENITEPEILASLDELIG-RWAKE 541 (570)
T ss_dssp EEEESSTTCTTCGGGSSEEEEEEE--------TTEEEEEECCCTT-SCSCCEEEEEEEEHHHHHHHHHHHHH-HHHHH
T ss_pred EEEeCCCchhhhccccceEEEEec--------ccceEEEECCcCC-CcccchhhhcCCCHHHHHHHHHHHHH-HHHHh
Confidence 999999999999999999999974 2579999999997 78999999999999999999999884 66663
No 5
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=100.00 E-value=1e-89 Score=759.66 Aligned_cols=433 Identities=24% Similarity=0.383 Sum_probs=375.2
Q ss_pred CCeEEEEEecCCCccCHHHHHHHHHHHHHhC-CCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCce
Q 047572 136 YGRFMMRLKLPNGVTTSEQTRYLASVIKKYG-KDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNP 214 (595)
Q Consensus 136 ~~~fmvRvripgG~lt~~Qlr~la~iA~~yG-~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI 214 (595)
.+.||||||+|+|++|++||+.|++||++|| + |++|+|||||||||||+++++++++++|.++||++.++|||++|||
T Consensus 4 ~~~~m~Rvr~p~G~lt~~qlr~la~ia~~yg~~-g~~~~TtRq~iql~gi~~~~~~~i~~~L~~~gl~~~~~~Gd~~Rni 82 (497)
T 1aop_A 4 RHAMLLRCRLPGGVITTKQWQAIDKFAGENTIY-GSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNV 82 (497)
T ss_dssp ----CEECCCGGGEEEHHHHHHHHHHHHHHBSS-CCEEECTTSCEEECCBC-----CHHHHHHHTTCCCC---CCCBCCC
T ss_pred cceEEEEEccCCcccCHHHHHHHHHHHHHhCCC-CeEEEECcccEEecCCCHHHHHHHHHHHHHcCCCCccccCCCCCCc
Confidence 4689999999999999999999999999999 8 9999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCccChHHHHHHHHHHHHhccC----------------CCCCc--cCCCCceEEEEecCCCCCCcCccCc
Q 047572 215 VGNPLAGIDPEEIVDTRPYTNLLSHFITANAQ----------------GNPTV--TNLPRKWNVCVVGSHDLYEHPHIND 276 (595)
Q Consensus 215 ~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~----------------~~~~~--~~LPrKfkI~isgc~~~c~~~~~~D 276 (595)
++||+++.|. +..|+.+++++|.++|.++.+ .+|.+ .+|||||||+||||+++|..+.+||
T Consensus 83 ~~~p~~~~~~-~~~d~~~~a~~l~~~l~~~~~~~~e~wl~~~~~~~~~~~p~~~~~~LP~Kfkiavsg~~~~~~~~~~~D 161 (497)
T 1aop_A 83 LCTSNPYESQ-LHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHAND 161 (497)
T ss_dssp EECSSCSSTT-HHHHHHHHHHHHHHHTCC--------------------------CCCSSCBCEEEECTTBCTTCGGGSS
T ss_pred ccCCcccCCh-hHHHHHHHHHHHHHHhhhccchhhhhhccccccccccCCcccccCCCCCcEEEEEecCCccccCcccCC
Confidence 9999997776 678999999999998864211 24444 6899999999999999999999999
Q ss_pred eEEEeEeecCc-eeEEEEEcCcCCCcc------ccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHh
Q 047572 277 LAYMPATKDGR-FGFNLLVGGFFSPKR------CAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDE 349 (595)
Q Consensus 277 Ig~v~~~~~g~-~gf~v~vGG~~g~~~------~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~ 349 (595)
|||+++.++|+ .||+|+|||++|.++ +..+..+ .||+++++++++++|+++|+++|+|.+|+|+||+|+|++
T Consensus 162 ig~i~~~~~g~~~G~~v~vGG~~g~~~~~~~~~p~~~~~~-~~v~~~~~~~~~~ai~~~~~~~g~r~~r~~aR~~~li~~ 240 (497)
T 1aop_A 162 MNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEF-GYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLER 240 (497)
T ss_dssp EEEEEEEETTEEEEEEEEECCBCCCCTTCTTCCCBCCEEE-EEEEGGGHHHHHHHHHHHHHHHSCSSCSTTCSHHHHHHH
T ss_pred eEEEEEEECCceeeEEEEecccccccCCcccCCCcccccc-CCcCHHHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHH
Confidence 99999998776 899999999999642 3556666 599999999999999999999999999999999999999
Q ss_pred hChHHHHHHHHhhCCCCCCCCCCCchhhhcccCCCCccceeecccCCeEEEEEEcCCccc---CHH-HHHHHHHHHHHhC
Q 047572 350 LGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRV---QAD-DMDELARLADAYG 425 (595)
Q Consensus 350 ~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~i~vp~Grl---~a~-ql~~La~iA~~yg 425 (595)
||+++|+++|+++++ .++++..+. +.+...+++||++|+ +|+|+|++++|+|++ +++ +|+.||+||++||
T Consensus 241 ~G~e~f~~~v~~~~~-~~~~~~~~~----~~~~~~~~~G~~~q~-~G~~~v~v~~p~G~l~~~~~~~~l~~ladia~~yg 314 (497)
T 1aop_A 241 VGVETFKAEVERRAG-IKFEPIRPY----EFTGRGDRIGWVKGI-DDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK 314 (497)
T ss_dssp HCHHHHHHHHHHHHT-CCCBCCCCC----CCCBCCCCCEEEECS-TTEEEEEECCGGGEECEETTEEHHHHHHHHHHHCS
T ss_pred hCHHHHHHHHHHHhC-CCCCCCCCC----CccccccceeEEEcC-CceEEEEEECCCCcccCCCHHHHHHHHHHHHHHhC
Confidence 999999999999997 666544322 224567899999987 699999999999999 778 9999999999998
Q ss_pred CCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCCCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhh---c
Q 047572 426 SGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLV---D 502 (595)
Q Consensus 426 ~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~---~ 502 (595)
|+||+|+||||+|.+|+.+++++++++|...|+....++.+++++||+|+++|+++++||++++..|.++|++.+ .
T Consensus 315 -g~irlT~~qni~l~gv~~~~l~~l~~~L~~~Gl~~~~~~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~~~~~~ 393 (497)
T 1aop_A 315 -GDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHG 393 (497)
T ss_dssp -SEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTTCCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHHTT
T ss_pred -CEEEEcCCCCEEEecCCHHHHHHHHHHHHHCCCCCCCCCceeeeecccCcccCcchhhhHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999887788766677789999999999999999999999999998888654 3
Q ss_pred C-CCCceEeeecCCCCCcccccCcEEEEeEeeecCCCceeccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHHHH
Q 047572 503 V-TKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVE 581 (595)
Q Consensus 503 l-p~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~ 581 (595)
+ |.+++||||||||+|++|+++||||+|.. + ++|+||+||+.+ ++++|+.+...++.++++++++.++ +
T Consensus 394 l~p~~~~i~vSGCpn~C~~~~~aDIGi~G~~----~----g~y~i~lGG~~~-~~~~g~~~~~~v~~~ei~~~l~~l~-~ 463 (497)
T 1aop_A 394 VSDEHIVMRVTGCPNGCGRAMLAEVGLVGKA----P----GRYNLHLGGNRI-GTRIPRMYKENITEPEILASLDELI-G 463 (497)
T ss_dssp CTTCCCCEEEESSTTCTTCGGGSSEEEEEEE----T----TEEEEEECCCTT-SCSCCEEEEEEEEHHHHHHHHHHHH-H
T ss_pred CCCcceEEEEECCcchhhhhccCCEEEEEec----C----CCEEEEECCCCC-CcchhhhhhcCCCHHHHHHHHHHHH-H
Confidence 4 89999999999999999999999999985 1 359999999997 7899999999999999999999998 4
Q ss_pred HHHhHhh
Q 047572 582 HFGAVLR 588 (595)
Q Consensus 582 ~~~~~~~ 588 (595)
+|.+.++
T Consensus 464 ~y~~~~~ 470 (497)
T 1aop_A 464 RWAKERE 470 (497)
T ss_dssp HHHHHCC
T ss_pred HHHHhCC
Confidence 6666443
No 6
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=100.00 E-value=2.7e-40 Score=353.19 Aligned_cols=218 Identities=17% Similarity=0.178 Sum_probs=193.3
Q ss_pred ccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCc------ccCC
Q 047572 133 KHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLT------SLQS 206 (595)
Q Consensus 133 ~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~------t~~a 206 (595)
+.+++.||||++.| |++|++||+.|++||++|| +|++++||||||||+||+.+++++++++|.++||. +.++
T Consensus 57 e~g~~~~tvRv~~p-G~lt~~qLr~LadiA~kyg-~G~irlTtrqnI~l~gi~~e~l~~l~~~L~~~Gl~~~~~~~~~g~ 134 (386)
T 3or1_B 57 KNGDKVFTVRCGAA-RLMSTSHIREACEIAKKFC-NGHLRFTTRNNIEFMVDNEETLKALVADLKTRKFAAGSFKFPIGG 134 (386)
T ss_dssp TTSCEEEEEEECCC-SEEEHHHHHHHHHHHHHHS-TTEEEECTTSCEEEEESSHHHHHHHHHHHTTCBCTTSCBSSCBCC
T ss_pred cCCCcEEEEEeCCC-ceeCHHHHHHHHHHHHHhC-CCeEEECCCCeEEEecCCHHHHHHHHHHHHhcCCCccccCCCccc
Confidence 34567899999999 9999999999999999999 59999999999999999999999999999999984 4567
Q ss_pred CCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEeEee--
Q 047572 207 GMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATK-- 284 (595)
Q Consensus 207 ~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~~-- 284 (595)
+|+.+|||++||+++.|..+..|+.+++.+|.+.|.+++ ...+||+||||+||||+++|++++++||||++++.
T Consensus 135 ~G~~vRni~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~~~----~~~~LP~K~kI~vsGCpn~C~~~~~~Dig~vg~~r~~ 210 (386)
T 3or1_B 135 TGASISNIVHTQGWVYCHTPATDASGPVKAVMDELFEEF----TSMRLPAIVRVSLACCINMCGAVHCSDIGLVGIHRKP 210 (386)
T ss_dssp CSSSCCCCBCCCGGGTCSSCSSCSHHHHHHHHHHTHHHH----SCCCSSSCCCEEEESSTTCCSSGGGSSEEEEEECCSC
T ss_pred cCCcccceEecCCccccchhHHHHHHHHHHHHHHHHHhh----hccccceeeEEeeccCccccccccccccccccccccc
Confidence 899999999999999999999999999999988776532 34589999999999999999999999999999842
Q ss_pred ---------------------------------cC--------------------------------ceeEEEEEcCcCC
Q 047572 285 ---------------------------------DG--------------------------------RFGFNLLVGGFFS 299 (595)
Q Consensus 285 ---------------------------------~g--------------------------------~~gf~v~vGG~~g 299 (595)
+| +.||.|++||+.+
T Consensus 211 p~id~e~~~~~Ce~~~cv~~CPt~AI~~~~~~~~g~~~~~v~id~~~Ci~Cg~C~~~CP~~Ai~~~~~~g~~i~vGGk~~ 290 (386)
T 3or1_B 211 PMIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPALPLSDGTGDGIAIMVGGKIS 290 (386)
T ss_dssp CCCCTTTHHHHCCHHHHHHHCTTCCEEEEEEEETTEEEEEEEECTTTCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBCC
T ss_pred ceechhhhcccccchhhhhhCchhhccccccccCCccccccccCCCcCCccccHHHhCcHhhCcCCCCceEEEEEccccC
Confidence 33 2699999999988
Q ss_pred C--ccccccccccccCCh-----hcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHH
Q 047572 300 P--KRCAEAIPLDAWVAA-----DDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVV 360 (595)
Q Consensus 300 ~--~~~~~~~~l~~~v~~-----eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~ 360 (595)
. ..+..+..+..|++. +|+.+++++|+++|+++|.. ++||+++|+|+|+++|+++++
T Consensus 291 ~~~~~~~~~~~l~~~~~~e~~~~~e~~~~i~~i~~~~~e~g~~----~ER~g~~i~R~G~~~f~~~~~ 354 (386)
T 3or1_B 291 NRIKVPSFSKVVVAFVPNEPPRWPTMAKIVKKIVEVYAEDARK----YERIGDWIHRIGWETFYEKTG 354 (386)
T ss_dssp CSSSCCBCCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHCCT----TCCHHHHHHHHCHHHHHHHHC
T ss_pred cccccccccceeecccccCCccHHHHHHHHHHHHHHHHHHCCc----CCCHHHHHHHcCHHHHHHHHC
Confidence 4 234566677777765 69999999999999999974 569999999999999999986
No 7
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=100.00 E-value=7.9e-39 Score=340.11 Aligned_cols=225 Identities=18% Similarity=0.229 Sum_probs=195.6
Q ss_pred ccceecc-cCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHc-CCccc
Q 047572 127 GLFHRRK-HHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQV-GLTSL 204 (595)
Q Consensus 127 G~y~~~~-~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~-GL~t~ 204 (595)
|++.+.. ..++.||||+++|+ .+|++||+.||+||++|| +|.+++||||||||+||+.+++++++++|.++ ||++
T Consensus 39 Gv~~~~~e~gd~~~~vRv~~p~-~lt~~qlr~ladiA~kyg-~G~lrlTtrqni~l~gv~~~~l~~l~~~L~~~~Gl~~- 115 (366)
T 3mm5_B 39 GVIKRVAESGDVIYVVRFGTPR-LLSIYTVRELCDIADKYS-DGYLRWTSRNNVEFFVTDESKIDDLINEVQERVGFPC- 115 (366)
T ss_dssp TEEEEEETTSCEEEEEEECCCS-EEEHHHHHHHHHHHHHHS-TTEEEECTTSCEEEEESCGGGHHHHHHHHHHHHCCCB-
T ss_pred CEEEeeccCCCceEEEEECCcc-ccCHHHHHHHHHHHHHhC-CCeEEEcCCCeEEEecCCHHHHHHHHHHHHHhcCCCc-
Confidence 6665432 23678999999999 999999999999999999 59999999999999999999999999999999 9965
Q ss_pred CCC-CC-----CcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceE
Q 047572 205 QSG-MD-----NVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLA 278 (595)
Q Consensus 205 ~a~-gd-----~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg 278 (595)
+++ |+ .+|||++||+++.|..+++|+.+++.+|.+.|.+.+ ....||+||||+|+||+++|++++++|||
T Consensus 116 g~~~G~~~~~~~~rni~aC~g~~~C~~a~~Dt~~~a~~l~~~l~~~~----~~~~LP~k~kI~vsgC~~~C~~~~~~Dig 191 (366)
T 3mm5_B 116 GGTWDAVKGEYGLSNIVHTQGWIHCHTPAIDASGIVKAVMDELYEYF----TDHKLPAMCRISLACCANMCGAVHASDIA 191 (366)
T ss_dssp CCCEETTTTEECCCCCBCCCHHHHCSSCSSCSHHHHHHHHHHTHHHH----HSCCBSSCCCEEEESSTTCSSSGGGSSEE
T ss_pred ccccCCcccccceeeeecCCCccccchHHHHHHHHHHHHHHHHHHhh----ccccccccceeccccCccccccccccccc
Confidence 555 88 999999999999999999999999999988876532 23579999999999999999999999999
Q ss_pred EEeEee------------------------------------------------------------cC-ceeEEEEEcCc
Q 047572 279 YMPATK------------------------------------------------------------DG-RFGFNLLVGGF 297 (595)
Q Consensus 279 ~v~~~~------------------------------------------------------------~g-~~gf~v~vGG~ 297 (595)
|++.+. .+ ..|+.+++||+
T Consensus 192 ~~g~~r~~p~id~~~c~~~Ce~~~Cv~~CP~~AI~~~~~~~~~~id~~~C~~Cg~C~~~CP~~Ai~~~~~~g~~i~vGgk 271 (366)
T 3mm5_B 192 IVGIHRTPPIPNDEAIRKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLFDPENDGAAIMVGGK 271 (366)
T ss_dssp EEEECCSCCCCCHHHHHHHCCHHHHHHTCTTCCEEEETTTTEEEECGGGCCCCCHHHHHCTTCCCCCTTTCEEEEEECCB
T ss_pred cccccccceEEcchhccccccccchhccCCccceEecCCCCeEEEehhhCCCcchHHHhCCHhhcccccCCceEEEEcCc
Confidence 999841 11 36999999999
Q ss_pred CCC--ccccccccccccCCh-----hcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHHhh
Q 047572 298 FSP--KRCAEAIPLDAWVAA-----DDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKR 362 (595)
Q Consensus 298 ~g~--~~~~~~~~l~~~v~~-----eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~~~ 362 (595)
.|. ..+..+..+..|++. +++++++++++++|+++|.. ++||+++|+|+|+++|+++++..
T Consensus 272 ~~~~~~~~~lg~~~~~~~~~~~p~~~ev~~~v~~i~~~y~~~g~~----~eR~~~~i~r~G~~~f~~~~~~~ 339 (366)
T 3mm5_B 272 LSEARRMPELSKVVVPWVPNEPPRWPTLVKYVKQILEAWAANANK----HERLIEWVDRIGWERFFELTGLE 339 (366)
T ss_dssp CSCTTSCCBCCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHCCT----TCCHHHHHHHHCHHHHHHHHTCC
T ss_pred cccccccCcccchhhccccCCCcchHHHHHHHHHHHHHHHHhCCc----cccHHHHHHHhCHHHHHHHHCCC
Confidence 884 344567777777765 89999999999999999964 57999999999999999999743
No 8
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=100.00 E-value=4.9e-39 Score=344.59 Aligned_cols=214 Identities=17% Similarity=0.198 Sum_probs=188.7
Q ss_pred CeEEEEEecCCCc-cCHHHHHHHHHHHHHhCCCCeEEec-CCCceEEecCCCCCHHHHHHHHH--HcCCcccCCCCCCcC
Q 047572 137 GRFMMRLKLPNGV-TTSEQTRYLASVIKKYGKDGCADVT-TRQNWQIRGVVLPDVPEILKGLA--QVGLTSLQSGMDNVR 212 (595)
Q Consensus 137 ~~fmvRvripgG~-lt~~Qlr~la~iA~~yG~~G~l~iT-tRq~iql~gI~~~~l~~i~~~L~--~~GL~t~~a~gd~~R 212 (595)
+.||||+++|+|+ +|++||+.||+||++|| +|.+++| |||||||+||+.+++++++++|. ++|++ .+++|+.+|
T Consensus 94 ~~~tvRv~~P~Gr~lt~~qLr~LadIAekyG-~G~irlTgtrqnI~l~gv~~e~l~~i~~eL~~~~~Gl~-~ggsG~~vR 171 (418)
T 3mm5_A 94 HFHTMRINQPSGWFYSTKALRGLCDVWEKWG-SGLTNFHGSTGDIIFLGTRSEYLQPCFEDLGNLEIPFD-IGGSGSDLR 171 (418)
T ss_dssp BCEEEEECCCGGGEEEHHHHHHHHHHHHHHS-CSEEETTCSSSCEEEEEECHHHHHHHHHHHHHSSSCCC-BCCCSSSBC
T ss_pred eEEEEEEeCCCCcccCHHHHHHHHHHHHHhC-CCEEEEecCCCceEeCCCCHHHHHHHHHHHhcccccCC-cCCcccccc
Confidence 4799999999997 89999999999999999 5999999 99999999999999999999999 99995 567889999
Q ss_pred ceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcC-ccCceEEEeEeec------
Q 047572 213 NPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHP-HINDLAYMPATKD------ 285 (595)
Q Consensus 213 nI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~-~~~DIg~v~~~~~------ 285 (595)
|+++||+++.|..+++||.+++.+|.+.|.+.+ ....||+||||+||||+++|+++ +++||||++++.+
T Consensus 172 ni~aC~G~~~C~~a~~Dt~~la~~L~~~l~~~~----~~~~LP~KfKI~iSGCpN~C~~~~~~~DIGiiG~~r~~~~iD~ 247 (418)
T 3mm5_A 172 TPSACMGPALCEFACYDTLELCYDLTMTYQDEL----HRPMWPYKFKIKCAGCPNDCVASKARSDFAIIGTWKDDIKVDQ 247 (418)
T ss_dssp CCEECCGGGTCTTCSSCHHHHHHHHHHHTHHHH----HSCCSSSCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECH
T ss_pred ceEecCCcccccchhhhHHHHHHHHHHHHHHhh----hhccCCcceEEeeeccccchhhHHHhccccccccccccccccH
Confidence 999999999999999999999999998876521 23479999999999999999997 7999999998531
Q ss_pred --------------------------------------------------------CceeEEEEEcCcCCC-cccccccc
Q 047572 286 --------------------------------------------------------GRFGFNLLVGGFFSP-KRCAEAIP 308 (595)
Q Consensus 286 --------------------------------------------------------g~~gf~v~vGG~~g~-~~~~~~~~ 308 (595)
.+.||.|++||+.+. ..+..+..
T Consensus 248 e~~~~~~~gc~i~~~cv~~CPt~Ai~~~~~~~~id~~~Ci~Cg~Ci~~CP~~~~~~~~~g~~I~vGGk~~~~~g~~lg~~ 327 (418)
T 3mm5_A 248 EAVKEYASWMDIENEVVKLCPTGAIKWDGKELTIDNRECVRCMHCINKMPKALKPGDERGATILIGGKAPFVEGAVIGWV 327 (418)
T ss_dssp HHHHHHHTTSCHHHHTGGGCTTCCEEECSSCEEECTTTCCCCCHHHHHCTTTEECCSSEEEEEEECCBCSTTTCCBCCEE
T ss_pred HHHhhhccccccCccccccCCccccccCCceeEEChhhcCccChhHHhCcHhhccCCCCCeEEEEeCCCcccccccccce
Confidence 236999999998751 22345666
Q ss_pred ccccCC----hhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHH
Q 047572 309 LDAWVA----ADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVV 360 (595)
Q Consensus 309 l~~~v~----~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~ 360 (595)
+..|++ .+++++++++|+++|+++|.+ ++||+++|+|+|+++|+++++
T Consensus 328 ~~pf~~~~~p~eei~~~ie~i~~~~~e~g~~----~ER~g~~i~RiG~~~F~e~v~ 379 (418)
T 3mm5_A 328 AVPFVEVEKPYDEIKEILEAIWDWWDEEGKF----RERIGELIWRKGMREFLKVIG 379 (418)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHHHHHHHCCT----TCCHHHHHHHHCHHHHHHHTT
T ss_pred eeccccCCCCHHHHHHHHHHHHHHHHHhCCC----CCcHHHHHHHcCHHHHHHHHC
Confidence 666776 699999999999999999875 469999999999999999875
No 9
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=100.00 E-value=1.2e-37 Score=333.64 Aligned_cols=214 Identities=18% Similarity=0.165 Sum_probs=187.5
Q ss_pred CeEEEEEecCCCc-cCHHHHHHHHHHHHHhCCCCeEEecC-CCceEEecCCCCCHHHHHHHHH-HcCCcccCCCCCCcCc
Q 047572 137 GRFMMRLKLPNGV-TTSEQTRYLASVIKKYGKDGCADVTT-RQNWQIRGVVLPDVPEILKGLA-QVGLTSLQSGMDNVRN 213 (595)
Q Consensus 137 ~~fmvRvripgG~-lt~~Qlr~la~iA~~yG~~G~l~iTt-Rq~iql~gI~~~~l~~i~~~L~-~~GL~t~~a~gd~~Rn 213 (595)
+.|||||++|+|+ +|++||+.||+||++|| +|.+++|| ||||||+||+.+++++++++|. ++||.+ +++|+.+||
T Consensus 96 ~~~tVRV~~P~Gr~lTaeqLR~LadIAekyG-~G~irlTt~rqNI~L~gi~~e~le~l~~eL~~~~Gl~~-ggsG~~vRn 173 (437)
T 3or1_A 96 HFHTVRLAQPAAKYYTAEYLEAICDVWDLRG-SGLTNMHGSTGDIVLLGTQTPQLEEIFFEMTHNLNTDL-GGSGSNLRT 173 (437)
T ss_dssp BCCEEEECCCGGGEEEHHHHHHHHHHHHHHS-CSEEESCCSSSCEEEECCCGGGHHHHHHHHHHHSCCCB-CCCSSSBCC
T ss_pred eEEEEEEeCCCCCccCHHHHHHHHHHHHHhC-CCEEEEcCccceEEEecCCHHHHHHHHHHHHhhcCcCc-cccCCccee
Confidence 4799999999997 89999999999999999 59999998 5999999999999999999998 999974 567899999
Q ss_pred eecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcC-ccCceEEEeEeec-------
Q 047572 214 PVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHP-HINDLAYMPATKD------- 285 (595)
Q Consensus 214 I~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~-~~~DIg~v~~~~~------- 285 (595)
|++||+++.|..+++||.+++.+|.+.|.+. .....||+||||+||||+++|+++ +++||||+++.++
T Consensus 174 ivaC~G~~~C~~a~~DT~~la~~L~~~l~~~----~~~~~LP~KfKI~iSGCpN~C~~~v~~aDIGiiG~~r~~i~id~~ 249 (437)
T 3or1_A 174 PESCLGISRCEFACYDTQLMCYQLTQDYQDE----LHRPAFPYKFKFKFDGCPNGCVASMARSDFAVIGTWKDDIKIDQE 249 (437)
T ss_dssp CEECCGGGSCSSCCSCHHHHHHHHHHHTHHH----HHSCCSSSCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECHH
T ss_pred eeccccccccCccccccchhhhhhHhhhhhc----cccccCCceeeEeeccccccccchhhhccccccccccCCCccCHH
Confidence 9999999999999999999999999988752 223579999999999999999998 7999999998531
Q ss_pred -----------------------------------------------------------------------CceeEEEEE
Q 047572 286 -----------------------------------------------------------------------GRFGFNLLV 294 (595)
Q Consensus 286 -----------------------------------------------------------------------g~~gf~v~v 294 (595)
.+.||.|+|
T Consensus 250 ~v~~~~~~e~~~~~~a~~g~~~~~~di~~~vv~~CPt~ai~~~~~~l~Id~~~C~~Cg~Ci~~CP~al~~~~~~G~~ilv 329 (437)
T 3or1_A 250 AVKAYVGGEFKPNAGAHAGRDWGKFDIEAEVVGLCPTGCMTYESGTLSIDNKNCTRCMHCINTMPRALKIGDERGASILV 329 (437)
T ss_dssp HHHHHHHTSSCGGGGTTTTSCCCSCCHHHHTTTTCTTCCEEEETTEEEECGGGCCCCSHHHHHCTTTEECCSSEEEEEEE
T ss_pred HHHHHhhcCCCCcccccccCcCcccccchhhhccCcHHheeecCCEEEEccccCCchhhhHhhCcHhhccCCCCceEEEE
Confidence 147999999
Q ss_pred cCcCCC-ccccccccccccCC----hhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHHHHHH
Q 047572 295 GGFFSP-KRCAEAIPLDAWVA----ADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVV 360 (595)
Q Consensus 295 GG~~g~-~~~~~~~~l~~~v~----~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~~~v~ 360 (595)
||+.+. ..+..+..+..|++ .+++.+++++|+++|.++|.. ++||+++|+|+|+++|++.+.
T Consensus 330 Ggk~~i~~g~~l~~~~~pf~~~~~p~~ei~~~i~~i~~~~~e~gk~----~ER~ge~i~R~G~~~f~e~~~ 396 (437)
T 3or1_A 330 GAKAPVLDGAQMGSLLIPFIAAEEPFDEVKEVIENIWEWWMEEGKN----RERLGETMKRVGFQKLLEVTG 396 (437)
T ss_dssp CCBCSTTTCCBCCEEEEEEECCCTTCHHHHHHHHHHHHHHHHHSCT----TCCHHHHHHHHCHHHHHHHTT
T ss_pred eCCCCcccCCccceeeeecccCCCCHHHHHHHHHHHHHHHHHcCCC----CccHHHHHHHcCHHHHHHHHC
Confidence 998872 22345655556666 789999999999999999863 579999999999999988764
No 10
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=100.00 E-value=1.6e-33 Score=300.91 Aligned_cols=204 Identities=21% Similarity=0.339 Sum_probs=177.4
Q ss_pred ccceeecccCCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCC------
Q 047572 386 YLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKF------ 459 (595)
Q Consensus 386 ~~Gv~~qk~~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~------ 459 (595)
.++-+.|+++++|+||++.| |++|++||+.||+||++||+|.+|||++|||+|++|+.+++++++++|...|+
T Consensus 51 vl~h~ae~g~~~~tvRv~~p-G~lt~~qLr~LadiA~kyg~G~irlTtrqnI~l~gi~~e~l~~l~~~L~~~Gl~~~~~~ 129 (386)
T 3or1_B 51 ILVHVAKNGDKVFTVRCGAA-RLMSTSHIREACEIAKKFCNGHLRFTTRNNIEFMVDNEETLKALVADLKTRKFAAGSFK 129 (386)
T ss_dssp EEEEEETTSCEEEEEEECCC-SEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESSHHHHHHHHHHHTTCBCTTSCBS
T ss_pred EEEEeccCCCcEEEEEeCCC-ceeCHHHHHHHHHHHHHhCCCeEEECCCCeEEEecCCHHHHHHHHHHHHhcCCCccccC
Confidence 34445678899999999999 99999999999999999999999999999999999999999999999987774
Q ss_pred -CC-CCCCCccceeecCCccccchhhhHHHHHHHHHHHHHHhhh---cCCCCceEeeecCCCCCcccccCcEEEEeEeee
Q 047572 460 -SP-QPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLV---DVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTR 534 (595)
Q Consensus 460 -~~-~~~~~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~---~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~~ 534 (595)
+. ..|+.+||+++|+|+.+|+++++||.+++.+|.++|++.+ .+|+||+|+||||||+|++++++||||+|...+
T Consensus 130 ~~~g~~G~~vRni~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~~~~~~~LP~K~kI~vsGCpn~C~~~~~~Dig~vg~~r~ 209 (386)
T 3or1_B 130 FPIGGTGASISNIVHTQGWVYCHTPATDASGPVKAVMDELFEEFTSMRLPAIVRVSLACCINMCGAVHCSDIGLVGIHRK 209 (386)
T ss_dssp SCBCCCSSSCCCCBCCCGGGTCSSCSSCSHHHHHHHHHHTHHHHSCCCSSSCCCEEEESSTTCCSSGGGSSEEEEEECCS
T ss_pred CCccccCCcccceEecCCccccchhHHHHHHHHHHHHHHHHHhhhccccceeeEEeeccCcccccccccccccccccccc
Confidence 33 4578899999999999999999999999999999988765 589999999999999999999999999998521
Q ss_pred c--------------------------------CCCc------------------------------eeccEEEEEcCcC
Q 047572 535 D--------------------------------EDGK------------------------------TCEGADVFLGGRI 552 (595)
Q Consensus 535 ~--------------------------------~~G~------------------------------~~~gy~I~lGG~~ 552 (595)
. .+|+ ...||.|++||+.
T Consensus 210 ~p~id~e~~~~~Ce~~~cv~~CPt~AI~~~~~~~~g~~~~~v~id~~~Ci~Cg~C~~~CP~~Ai~~~~~~g~~i~vGGk~ 289 (386)
T 3or1_B 210 PPMIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPALPLSDGTGDGIAIMVGGKI 289 (386)
T ss_dssp CCCCCTTTHHHHCCHHHHHHHCTTCCEEEEEEEETTEEEEEEEECTTTCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBC
T ss_pred cceechhhhcccccchhhhhhCchhhccccccccCCccccccccCCCcCCccccHHHhCcHhhCcCCCCceEEEEEcccc
Confidence 0 0342 0258999999999
Q ss_pred C---CCCcccccccCCCCc-----cCHHHHHHHHHHHHHHhHhhccc
Q 047572 553 G---SDSHLGDIYKKGVPC-----KDLVPLVADILVEHFGAVLRERE 591 (595)
Q Consensus 553 g---~~~~lg~~~~~~v~~-----eel~~~l~~ll~~~~~~~~~~r~ 591 (595)
+ .++++++++..+++. +|+.+++++++ ++|.++++.||
T Consensus 290 ~~~~~~~~~~~~l~~~~~~e~~~~~e~~~~i~~i~-~~~~e~g~~~E 335 (386)
T 3or1_B 290 SNRIKVPSFSKVVVAFVPNEPPRWPTMAKIVKKIV-EVYAEDARKYE 335 (386)
T ss_dssp CCSSSCCBCCEEEEEEEECCTTTCHHHHHHHHHHH-HHHHHHCCTTC
T ss_pred CcccccccccceeecccccCCccHHHHHHHHHHHH-HHHHHHCCcCC
Confidence 8 478999999888876 59999999988 68988877544
No 11
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=99.98 E-value=2.1e-32 Score=293.18 Aligned_cols=194 Identities=18% Similarity=0.296 Sum_probs=170.4
Q ss_pred CeEEEEEEcCCcc-cCHHHHHHHHHHHHHhCCCeEEEc-CCCceEeeccChhhHHHHHHhhh--cCCCCC-CCCCCccce
Q 047572 396 GFSYVGLHIPVGR-VQADDMDELARLADAYGSGELRLT-VEQNIIIPNVDNSKLEALLKEPL--LEKFSP-QPSILMKGL 470 (595)
Q Consensus 396 G~~~v~i~vp~Gr-l~a~ql~~La~iA~~yg~g~irlT-~~Qni~l~~I~~~~v~~l~~el~--~~g~~~-~~~~~~r~v 470 (595)
+.|+||+++|+|+ +|++||+.||+||++||+|.+||| ++|||+|++|+.+++++++++|. ..++.. ..|+.+||+
T Consensus 94 ~~~tvRv~~P~Gr~lt~~qLr~LadIAekyG~G~irlTgtrqnI~l~gv~~e~l~~i~~eL~~~~~Gl~~ggsG~~vRni 173 (418)
T 3mm5_A 94 HFHTMRINQPSGWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGTRSEYLQPCFEDLGNLEIPFDIGGSGSDLRTP 173 (418)
T ss_dssp BCEEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEETTCSSSCEEEEEECHHHHHHHHHHHHHSSSCCCBCCCSSSBCCC
T ss_pred eEEEEEEeCCCCcccCHHHHHHHHHHHHHhCCCEEEEecCCCceEeCCCCHHHHHHHHHHHhcccccCCcCCccccccce
Confidence 4899999999998 899999999999999999999999 89999999999999999999998 777765 367889999
Q ss_pred eecCCccccchhhhHHHHHHHHHHHHHHhhh---cCCCCceEeeecCCCCCccc-ccCcEEEEeEeeecC----------
Q 047572 471 VACTGNQFCGQAIIETKARALKVTKEVERLV---DVTKPVRMHWTGCPNSCAQV-QVADIGFMGCMTRDE---------- 536 (595)
Q Consensus 471 ~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~---~lp~~~kI~iSGCpn~Ca~~-~~aDIGlvG~~~~~~---------- 536 (595)
++|+|+.+|+++++||++++..|.++|.+.+ .+|+||||+||||||+|+++ +++||||+|......
T Consensus 174 ~aC~G~~~C~~a~~Dt~~la~~L~~~l~~~~~~~~LP~KfKI~iSGCpN~C~~~~~~~DIGiiG~~r~~~~iD~e~~~~~ 253 (418)
T 3mm5_A 174 SACMGPALCEFACYDTLELCYDLTMTYQDELHRPMWPYKFKIKCAGCPNDCVASKARSDFAIIGTWKDDIKVDQEAVKEY 253 (418)
T ss_dssp EECCGGGTCTTCSSCHHHHHHHHHHHTHHHHHSCCSSSCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECHHHHHHH
T ss_pred EecCCcccccchhhhHHHHHHHHHHHHHHhhhhccCCcceEEeeeccccchhhHHHhccccccccccccccccHHHHhhh
Confidence 9999999999999999999999999987653 68999999999999999997 799999999853210
Q ss_pred ----------------------CCc-------------------------eeccEEEEEcCcC--CCCCcccccccCCCC
Q 047572 537 ----------------------DGK-------------------------TCEGADVFLGGRI--GSDSHLGDIYKKGVP 567 (595)
Q Consensus 537 ----------------------~G~-------------------------~~~gy~I~lGG~~--g~~~~lg~~~~~~v~ 567 (595)
+++ ...+|.|++||+. +.+++++.++..+++
T Consensus 254 ~~gc~i~~~cv~~CPt~Ai~~~~~~~~id~~~Ci~Cg~Ci~~CP~~~~~~~~~g~~I~vGGk~~~~~g~~lg~~~~pf~~ 333 (418)
T 3mm5_A 254 ASWMDIENEVVKLCPTGAIKWDGKELTIDNRECVRCMHCINKMPKALKPGDERGATILIGGKAPFVEGAVIGWVAVPFVE 333 (418)
T ss_dssp HTTSCHHHHTGGGCTTCCEEECSSCEEECTTTCCCCCHHHHHCTTTEECCSSEEEEEEECCBCSTTTCCBCCEEEEEEEC
T ss_pred ccccccCccccccCCccccccCCceeEEChhhcCccChhHHhCcHhhccCCCCCeEEEEeCCCcccccccccceeecccc
Confidence 010 1358999999998 578999999888887
Q ss_pred ----ccCHHHHHHHHHHHHHHhHhhcc
Q 047572 568 ----CKDLVPLVADILVEHFGAVLRER 590 (595)
Q Consensus 568 ----~eel~~~l~~ll~~~~~~~~~~r 590 (595)
.++|++++++++ ++|.++++.|
T Consensus 334 ~~~p~eei~~~ie~i~-~~~~e~g~~~ 359 (418)
T 3mm5_A 334 VEKPYDEIKEILEAIW-DWWDEEGKFR 359 (418)
T ss_dssp CCTTCHHHHHHHHHHH-HHHHHHCCTT
T ss_pred CCCCHHHHHHHHHHHH-HHHHHhCCCC
Confidence 799999999988 5888876644
No 12
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=99.98 E-value=3.3e-32 Score=291.66 Aligned_cols=195 Identities=19% Similarity=0.353 Sum_probs=171.5
Q ss_pred CeEEEEEEcCCcc-cCHHHHHHHHHHHHHhCCCeEEEcC-CCceEeeccChhhHHHHHHhhh-cCCCCC-CCCCCcccee
Q 047572 396 GFSYVGLHIPVGR-VQADDMDELARLADAYGSGELRLTV-EQNIIIPNVDNSKLEALLKEPL-LEKFSP-QPSILMKGLV 471 (595)
Q Consensus 396 G~~~v~i~vp~Gr-l~a~ql~~La~iA~~yg~g~irlT~-~Qni~l~~I~~~~v~~l~~el~-~~g~~~-~~~~~~r~v~ 471 (595)
++|+||+++|+|+ +|++||+.||+||++||+|.+|||+ +|||+|++|+.+++++++++|. ..++.. ..|+.+||++
T Consensus 96 ~~~tVRV~~P~Gr~lTaeqLR~LadIAekyG~G~irlTt~rqNI~L~gi~~e~le~l~~eL~~~~Gl~~ggsG~~vRniv 175 (437)
T 3or1_A 96 HFHTVRLAQPAAKYYTAEYLEAICDVWDLRGSGLTNMHGSTGDIVLLGTQTPQLEEIFFEMTHNLNTDLGGSGSNLRTPE 175 (437)
T ss_dssp BCCEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEESCCSSSCEEEECCCGGGHHHHHHHHHHHSCCCBCCCSSSBCCCE
T ss_pred eEEEEEEeCCCCCccCHHHHHHHHHHHHHhCCCEEEEcCccceEEEecCCHHHHHHHHHHHHhhcCcCccccCCcceeee
Confidence 4899999999998 8999999999999999999999997 5999999999999999999987 677765 3577899999
Q ss_pred ecCCccccchhhhHHHHHHHHHHHHHHhhh---cCCCCceEeeecCCCCCccc-ccCcEEEEeEeeecC--C--------
Q 047572 472 ACTGNQFCGQAIIETKARALKVTKEVERLV---DVTKPVRMHWTGCPNSCAQV-QVADIGFMGCMTRDE--D-------- 537 (595)
Q Consensus 472 AC~G~~~C~~a~~et~~~a~~l~~~l~~~~---~lp~~~kI~iSGCpn~Ca~~-~~aDIGlvG~~~~~~--~-------- 537 (595)
+|+|+.+|+++++||++++..|.+.|.+.+ .+|.||||+||||||+|+++ +++||||+|+..++. |
T Consensus 176 aC~G~~~C~~a~~DT~~la~~L~~~l~~~~~~~~LP~KfKI~iSGCpN~C~~~v~~aDIGiiG~~r~~i~id~~~v~~~~ 255 (437)
T 3or1_A 176 SCLGISRCEFACYDTQLMCYQLTQDYQDELHRPAFPYKFKFKFDGCPNGCVASMARSDFAVIGTWKDDIKIDQEAVKAYV 255 (437)
T ss_dssp ECCGGGSCSSCCSCHHHHHHHHHHHTHHHHHSCCSSSCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECHHHHHHHH
T ss_pred ccccccccCccccccchhhhhhHhhhhhccccccCCceeeEeeccccccccchhhhccccccccccCCCccCHHHHHHHh
Confidence 999999999999999999999999988754 68999999999999999998 799999999963210 0
Q ss_pred ------------C--------------------------c-------------------------eeccEEEEEcCcCC-
Q 047572 538 ------------G--------------------------K-------------------------TCEGADVFLGGRIG- 553 (595)
Q Consensus 538 ------------G--------------------------~-------------------------~~~gy~I~lGG~~g- 553 (595)
| + ...||.|++||+.+
T Consensus 256 ~~e~~~~~~a~~g~~~~~~di~~~vv~~CPt~ai~~~~~~l~Id~~~C~~Cg~Ci~~CP~al~~~~~~G~~ilvGgk~~i 335 (437)
T 3or1_A 256 GGEFKPNAGAHAGRDWGKFDIEAEVVGLCPTGCMTYESGTLSIDNKNCTRCMHCINTMPRALKIGDERGASILVGAKAPV 335 (437)
T ss_dssp HTSSCGGGGTTTTSCCCSCCHHHHTTTTCTTCCEEEETTEEEECGGGCCCCSHHHHHCTTTEECCSSEEEEEEECCBCST
T ss_pred hcCCCCcccccccCcCcccccchhhhccCcHHheeecCCEEEEccccCCchhhhHhhCcHhhccCCCCceEEEEeCCCCc
Confidence 0 0 04689999999997
Q ss_pred -CCCcccccccCCCC----ccCHHHHHHHHHHHHHHhHhhccc
Q 047572 554 -SDSHLGDIYKKGVP----CKDLVPLVADILVEHFGAVLRERE 591 (595)
Q Consensus 554 -~~~~lg~~~~~~v~----~eel~~~l~~ll~~~~~~~~~~r~ 591 (595)
.++++++++..+++ .+++++++++++ +||.++++.||
T Consensus 336 ~~g~~l~~~~~pf~~~~~p~~ei~~~i~~i~-~~~~e~gk~~E 377 (437)
T 3or1_A 336 LDGAQMGSLLIPFIAAEEPFDEVKEVIENIW-EWWMEEGKNRE 377 (437)
T ss_dssp TTCCBCCEEEEEEECCCTTCHHHHHHHHHHH-HHHHHHSCTTC
T ss_pred ccCCccceeeeecccCCCCHHHHHHHHHHHH-HHHHHcCCCCc
Confidence 78999998877776 799999999988 68888887664
No 13
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
Probab=99.98 E-value=2.5e-32 Score=305.33 Aligned_cols=219 Identities=17% Similarity=0.174 Sum_probs=186.1
Q ss_pred hcccceecccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCccc
Q 047572 125 WLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSL 204 (595)
Q Consensus 125 ~~G~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~ 204 (595)
..|++.|+ +|.|+||+++|+|++|++||+.||+||++||. |.+++|++|||+|.||+.++++++++.|.+.||.+.
T Consensus 342 ~~G~~~qk---~G~~~v~v~~p~G~lt~~~l~~Ladiae~yg~-g~irlT~~qniil~~v~~~~l~~i~~~L~~~Gl~~~ 417 (566)
T 1zj8_A 342 HVGVQRLK---NGLNAVGVAPIAGRVSGTILTAVADLMARAGS-DRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQSR 417 (566)
T ss_dssp CCEEEECT---TSSEEEEEBCBTTEEEHHHHHHHHHHHHHHTC-CCEEECTTSCEEEEEECHHHHHHHHHHHHHTTCBSS
T ss_pred Ccceeecc---CCcEEEEEeCCCCccCHHHHHHHHHHHHHhCC-CEEEECCCCcEEEecCCHHHHHHHHHHHHHcCCCCC
Confidence 46777653 58899999999999999999999999999994 999999999999999999999999999999999775
Q ss_pred CCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEeEee
Q 047572 205 QSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATK 284 (595)
Q Consensus 205 ~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~~~~ 284 (595)
++ + .+||+++||++..|..+++||..++..|.+.|..++. .....+|.||||+||||+|.|++++++||||++...
T Consensus 418 ~s-~-~~r~~~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~--~~~~~~~~~~ki~vSGCpN~Ca~~~~aDIGivG~~~ 493 (566)
T 1zj8_A 418 PS-H-WRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLE--DINSQLDVPITVNINGCPNSCARIQIADIGFKGQMI 493 (566)
T ss_dssp CC-H-HHHHEEECCBTTTCTTCSSBCHHHHHHHHHHHHHHTH--HHHTTCCSCCCEEEESSTTCTTCGGGSSEEEEEEEE
T ss_pred CC-C-cccccccCCCcccCccchhhHHHHHHHHHHHHHHHhh--ccccccCCCceEEEecCCccchhhhhcceeEEEEec
Confidence 43 3 7799999999999999999999888888777654210 011247899999999999999999999999999865
Q ss_pred c---Cc--eeEEEEEcCcCCCcccccccccc-ccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHH
Q 047572 285 D---GR--FGFNLLVGGFFSPKRCAEAIPLD-AWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFR 356 (595)
Q Consensus 285 ~---g~--~gf~v~vGG~~g~~~~~~~~~l~-~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~ 356 (595)
. |+ .||+|++||+.|..+ ..+..+. ..++.++++++++.+++.|++++... +||..+++|+|+++|+
T Consensus 494 ~~~~g~~~~gy~i~lGG~~g~~~-~~g~~l~~~~v~~eei~~~l~~l~~~y~~~~~~~----Erf~~~i~R~G~~~~~ 566 (566)
T 1zj8_A 494 DDGHGGSVEGFQVHLGGHLGLDA-GFGRKLRQHKVTSDELGDYIDRVVRNFVKHRSEG----ERFAQWVIRAEEDDLR 566 (566)
T ss_dssp ESSSSCEEEEEEEEESCBCSTTC-BCCEECTTCCEETTTHHHHHHHHHHHHHHSCCTT----CCHHHHHHHSCGGGGC
T ss_pred cCCCCccceeEEEEeCCCCCCCC-ccccccccCCCCHHHHHHHHHHHHHHHHHhCCCC----CCHHHHHHhcCHHhcC
Confidence 2 32 699999999988433 5565554 35799999999999999999987643 5999999999999874
No 14
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1
Probab=99.97 E-value=3.4e-32 Score=305.27 Aligned_cols=194 Identities=18% Similarity=0.265 Sum_probs=173.1
Q ss_pred HHhhcccceecccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHH-cC
Q 047572 122 RLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQ-VG 200 (595)
Q Consensus 122 rlk~~G~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~-~G 200 (595)
+.+|.|+|.| +++|.||||+++|+|++|++||+.||+||++||. |.+++|+||||+|+||+.+++++++++|.. .|
T Consensus 396 ~~~~~Gv~~q--k~~G~~~v~v~vp~Grlt~~qLr~LadiAe~yg~-G~irlT~~QnIil~~v~~e~l~~l~~el~~~~~ 472 (608)
T 2akj_A 396 RREYLGVHPQ--KQQGLSFVGLHIPVGRLQADEMEELARIADVYGS-GELRLTVEQNIIIPNVENSKIDSLLNEPLLKER 472 (608)
T ss_dssp CCCCBEEEEC--SSTTEEEEEECCGGGEECHHHHHHHHHHHHHHSS-SEEEEETTTEEEEEEEETTTHHHHTTSHHHHTT
T ss_pred cccccceeec--CcCCeEEEEEeCCCccCCHHHHHHHHHHHHHhCC-CeEEECCCCCeEECCCCHHHHHHHHHHHhhhcc
Confidence 5778999986 3578999999999999999999999999999994 999999999999999999999999998866 57
Q ss_pred CcccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEE
Q 047572 201 LTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYM 280 (595)
Q Consensus 201 L~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v 280 (595)
+.. + +|+.+||+++||+++.|..+++||.+++..|.+.|... ..||+||||+||||++.|++++++||||+
T Consensus 473 ~~~-~-~g~~~r~i~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~~-------~~lp~k~kI~vSGCpn~Ca~~~iaDIGlv 543 (608)
T 2akj_A 473 YSP-E-PPILMKGLVACTGSQFCGQAIIETKARALKVTEEVQRL-------VSVTRPVRMHWTGCPNSCGQVQVADIGFM 543 (608)
T ss_dssp SCS-S-CCTTTTEEEECCGGGTCTTCSSCCHHHHHHHHHHHHHH-------EECSSCCEEEEESSTTCTTCGGGSSEEEE
T ss_pred cCC-C-CCccccceeeCCCCCCCCchhhhHHHHHHHHHHHHHHh-------cCCCcceEEEEeCCCCccccccccceEEE
Confidence 654 3 57899999999999999999999999999999988652 25899999999999999999999999999
Q ss_pred eEee---cCc--eeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHH
Q 047572 281 PATK---DGR--FGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEA 328 (595)
Q Consensus 281 ~~~~---~g~--~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~ 328 (595)
+... +|+ .||+||+||+.|..+ ..+..+..+|+.+++++++++|+..
T Consensus 544 G~~~~~~~G~~~~gy~v~lGG~~g~~~-rlg~~l~~~v~~eev~~~l~~ll~~ 595 (608)
T 2akj_A 544 GCMTRDENGKPCEGADVFVGGRIGSDS-HLGDIYKKAVPCKDLVPVVAEILIN 595 (608)
T ss_dssp EEEEECTTCCEEEEEEEEECCBCSTTC-BCCEEEEEEEETTTHHHHHHHHHHH
T ss_pred EEeeccCCCcccceEEEEECCcCCCCC-chhhHhhcCCCHHHHHHHHHHHHHH
Confidence 9863 454 699999999998543 6777888899999999999999973
No 15
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=99.97 E-value=2e-32 Score=290.87 Aligned_cols=201 Identities=24% Similarity=0.376 Sum_probs=175.3
Q ss_pred ceeeccc---CCeEEEEEEcCCcccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcC-CCCCC-
Q 047572 388 GVYPQKQ---EGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLE-KFSPQ- 462 (595)
Q Consensus 388 Gv~~qk~---~G~~~v~i~vp~Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~-g~~~~- 462 (595)
|++.|.+ +|+|+||+++|. ++|++||+.||+||++||+|.+|||++|||+|++|+.+++++++++|... |+...
T Consensus 39 Gv~~~~~e~gd~~~~vRv~~p~-~lt~~qlr~ladiA~kyg~G~lrlTtrqni~l~gv~~~~l~~l~~~L~~~~Gl~~g~ 117 (366)
T 3mm5_B 39 GVIKRVAESGDVIYVVRFGTPR-LLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEVQERVGFPCGG 117 (366)
T ss_dssp TEEEEEETTSCEEEEEEECCCS-EEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESCGGGHHHHHHHHHHHHCCCBCC
T ss_pred CEEEeeccCCCceEEEEECCcc-ccCHHHHHHHHHHHHHhCCCeEEEcCCCeEEEecCCHHHHHHHHHHHHHhcCCCccc
Confidence 7887765 899999999998 99999999999999999999999999999999999999999999999776 87653
Q ss_pred C-CC-----CccceeecCCccccchhhhHHHHHHHHHHHHHHhhh---cCCCCceEeeecCCCCCcccccCcEEEEeEee
Q 047572 463 P-SI-----LMKGLVACTGNQFCGQAIIETKARALKVTKEVERLV---DVTKPVRMHWTGCPNSCAQVQVADIGFMGCMT 533 (595)
Q Consensus 463 ~-~~-----~~r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~---~lp~~~kI~iSGCpn~Ca~~~~aDIGlvG~~~ 533 (595)
. |+ .+||+++|+|+++|+++++||++++..|.++|++.+ .+|+||+|+||||||+|++++.+||||+|...
T Consensus 118 ~~G~~~~~~~~rni~aC~g~~~C~~a~~Dt~~~a~~l~~~l~~~~~~~~LP~k~kI~vsgC~~~C~~~~~~Dig~~g~~r 197 (366)
T 3mm5_B 118 TWDAVKGEYGLSNIVHTQGWIHCHTPAIDASGIVKAVMDELYEYFTDHKLPAMCRISLACCANMCGAVHASDIAIVGIHR 197 (366)
T ss_dssp CEETTTTEECCCCCBCCCHHHHCSSCSSCSHHHHHHHHHHTHHHHHSCCBSSCCCEEEESSTTCSSSGGGSSEEEEEECC
T ss_pred ccCCcccccceeeeecCCCccccchHHHHHHHHHHHHHHHHHHhhccccccccceeccccCccccccccccccccccccc
Confidence 3 56 899999999999999999999999999999988764 58999999999999999999999999999842
Q ss_pred e-----------------------------c-CCCc--------------------------eeccEEEEEcCcCC---C
Q 047572 534 R-----------------------------D-EDGK--------------------------TCEGADVFLGGRIG---S 554 (595)
Q Consensus 534 ~-----------------------------~-~~G~--------------------------~~~gy~I~lGG~~g---~ 554 (595)
+ + .+++ ...+|.|++||+.| .
T Consensus 198 ~~p~id~~~c~~~Ce~~~Cv~~CP~~AI~~~~~~~~~~id~~~C~~Cg~C~~~CP~~Ai~~~~~~g~~i~vGgk~~~~~~ 277 (366)
T 3mm5_B 198 TPPIPNDEAIRKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLFDPENDGAAIMVGGKLSEARR 277 (366)
T ss_dssp SCCCCCHHHHHHHCCHHHHHHTCTTCCEEEETTTTEEEECGGGCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBCSCTTS
T ss_pred cceEEcchhccccccccchhccCCccceEecCCCCeEEEehhhCCCcchHHHhCCHhhcccccCCceEEEEcCccccccc
Confidence 0 0 0110 03589999999997 5
Q ss_pred CCcccccccCCCCc-----cCHHHHHHHHHHHHHHhHhhcc
Q 047572 555 DSHLGDIYKKGVPC-----KDLVPLVADILVEHFGAVLRER 590 (595)
Q Consensus 555 ~~~lg~~~~~~v~~-----eel~~~l~~ll~~~~~~~~~~r 590 (595)
++++|+.+..+++. +|+++++++++ ++|.+.++.+
T Consensus 278 ~~~lg~~~~~~~~~~~p~~~ev~~~v~~i~-~~y~~~g~~~ 317 (366)
T 3mm5_B 278 MPELSKVVVPWVPNEPPRWPTLVKYVKQIL-EAWAANANKH 317 (366)
T ss_dssp CCBCCEEEEEEEECCTTTCHHHHHHHHHHH-HHHHHHCCTT
T ss_pred cCcccchhhccccCCCcchHHHHHHHHHHH-HHHHHhCCcc
Confidence 79999999888875 89999999988 5888877654
No 16
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=99.97 E-value=2.9e-32 Score=305.45 Aligned_cols=193 Identities=18% Similarity=0.292 Sum_probs=172.6
Q ss_pred HHhhcccceecccCCCeEEEEEecCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCC
Q 047572 122 RLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGL 201 (595)
Q Consensus 122 rlk~~G~y~~~~~~~~~fmvRvripgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL 201 (595)
+.+|.|+|.| +++|.||||+++|+|++|++||+.||+||++||. |.+++|+||||+|+||+.+++++++++|...|+
T Consensus 379 ~~~~~G~~~q--k~~g~~~v~v~~p~Grlt~~~Lr~LadiAe~yg~-g~irlT~~QnI~l~~v~~e~l~~l~~el~~~~~ 455 (591)
T 3b0g_A 379 RRDYLGVHPQ--KQEGYSFIGLHIPVGRVQADDMDELARLADEYGS-GEIRLTVEQNIIIPNIETSKIEALLKEPVLSTF 455 (591)
T ss_dssp CCCCSEEEEC--SSTTEEEEEECCGGGEECHHHHHHHHHHHHHHSS-SEEEECTTSCEEEEEEEGGGHHHHTTCGGGGTS
T ss_pred cccccceeec--CcCCeEEEEEeCCCcCCCHHHHHHHHHHHHHhCC-CeEEECCCCceEeCCCCHHHHHHHHHHHHhccC
Confidence 5678899986 3578999999999999999999999999999994 999999999999999999999999999877776
Q ss_pred cccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCCCCcCccCceEEEe
Q 047572 202 TSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMP 281 (595)
Q Consensus 202 ~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~c~~~~~~DIg~v~ 281 (595)
.. + +|+.+|||++||+++.|..++.||.+++..|.+.|... ..||+||||+||||++.|++++++||||++
T Consensus 456 ~~-~-~g~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~-------~~lp~k~kI~iSGCpn~C~~~~~aDIG~vG 526 (591)
T 3b0g_A 456 SP-D-PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQ-------VSLTKPVRMHWTGCPNTCAQVQVADIGFMG 526 (591)
T ss_dssp CS-S-CCHHHHTCEECCGGGTCTTCSSCCHHHHHHHHHHHHHH-------EECCSCCCEEEESSTTCTTCGGGSSEEEEE
T ss_pred CC-C-CCCCccceecCCCcccCcchhhhHHHHHHHHHHHHHHh-------cCCCcceEEEEeCCCCcccCcccccEEEEE
Confidence 43 2 57889999999999999999999999999999988642 358999999999999999999999999999
Q ss_pred Eee---cCc--eeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHH
Q 047572 282 ATK---DGR--FGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLE 327 (595)
Q Consensus 282 ~~~---~g~--~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~ 327 (595)
... +|+ .||+||+||+.|..+ ..+..+..+|+++++++++++++.
T Consensus 527 ~~~~~~~G~~~~gy~v~lGG~~g~~~-rlg~~l~~~v~~eev~~~i~~ll~ 576 (591)
T 3b0g_A 527 CLTRDKNGKTVEGADVFLGGRIGSDS-HLGEVYKKAVPCDDLVPLVVDLLV 576 (591)
T ss_dssp EEEECTTSCEEEEEEEEECCBCSSSC-BCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred EeecCCCCccccceEEEECCcCCCCC-chhhHHhcCCCHHHHHHHHHHHHH
Confidence 863 454 699999999998543 677788889999999999999987
No 17
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=99.97 E-value=6.2e-31 Score=290.34 Aligned_cols=211 Identities=14% Similarity=0.115 Sum_probs=180.7
Q ss_pred cccceecccCCCeEEEEEecCCCcc---CHH-HHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCC
Q 047572 126 LGLFHRRKHHYGRFMMRLKLPNGVT---TSE-QTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGL 201 (595)
Q Consensus 126 ~G~y~~~~~~~~~fmvRvripgG~l---t~~-Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL 201 (595)
.|++.| ++|.|.||+++|+|++ +++ |++.||+||++|| |.+++|++|||+|.||+.++++++++.|.+.||
T Consensus 273 ~G~~~q---~~G~~~v~v~~p~G~l~~~~~~~~l~~ladia~~yg--g~irlT~~qni~l~gv~~~~l~~l~~~L~~~Gl 347 (497)
T 1aop_A 273 IGWVKG---IDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK--GDFRITANQNLIIAGVPESEKAKIEKIAKESGL 347 (497)
T ss_dssp CEEEEC---STTEEEEEECCGGGEECEETTEEHHHHHHHHHHHCS--SEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTT
T ss_pred eeEEEc---CCceEEEEEECCCCcccCCCHHHHHHHHHHHHHHhC--CEEEEcCCCCEEEecCCHHHHHHHHHHHHHCCC
Confidence 455543 3689999999999999 888 9999999999997 899999999999999999999999999999999
Q ss_pred cccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCC-CCceEEEEecCCCCCCcCccCceEEE
Q 047572 202 TSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNL-PRKWNVCVVGSHDLYEHPHINDLAYM 280 (595)
Q Consensus 202 ~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~L-PrKfkI~isgc~~~c~~~~~~DIg~v 280 (595)
.+ . .++.+||+++||++..|..++.||.+++..|.+.|...+. ...| |.||||+||||++.|++++++||||+
T Consensus 348 ~~-~-~~~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~~~----~~~l~p~~~~i~vSGCpn~C~~~~~aDIGi~ 421 (497)
T 1aop_A 348 MN-A-VTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMA----KHGVSDEHIVMRVTGCPNGCGRAMLAEVGLV 421 (497)
T ss_dssp TC-C-CCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHH----HTTCTTCCCCEEEESSTTCTTCGGGSSEEEE
T ss_pred CC-C-CCCceeeeecccCcccCcchhhhHHHHHHHHHHHHHHHHh----hcCCCCcceEEEEECCcchhhhhccCCEEEE
Confidence 87 3 4777899999999999999999999866666554432110 1234 99999999999999999999999999
Q ss_pred eEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChHHHH
Q 047572 281 PATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFR 356 (595)
Q Consensus 281 ~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e~f~ 356 (595)
+..+ | +|+|++||..+. ...+..+..+++.++++++++.+++.|++++... +||..+++|+|+++|.
T Consensus 422 G~~~-g--~y~i~lGG~~~~--~~~g~~~~~~v~~~ei~~~l~~l~~~y~~~~~~~----Erf~~~i~R~G~~~~~ 488 (497)
T 1aop_A 422 GKAP-G--RYNLHLGGNRIG--TRIPRMYKENITEPEILASLDELIGRWAKEREAG----EGFGDFTVRAGIIRPV 488 (497)
T ss_dssp EEET-T--EEEEEECCCTTS--CSCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCTT----CCHHHHHHHTTSSCCC
T ss_pred EecC-C--CEEEEECCCCCC--cchhhhhhcCCCHHHHHHHHHHHHHHHHHhCCCC----CcHHHHHHHcCcHHhh
Confidence 9864 3 699999998862 2456666678899999999999999999988654 5999999999999876
No 18
>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=99.96 E-value=4.3e-30 Score=286.75 Aligned_cols=208 Identities=14% Similarity=0.125 Sum_probs=179.0
Q ss_pred cccceecccCCCeEEEEEecCCCccCH----HHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCC
Q 047572 126 LGLFHRRKHHYGRFMMRLKLPNGVTTS----EQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGL 201 (595)
Q Consensus 126 ~G~y~~~~~~~~~fmvRvripgG~lt~----~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL 201 (595)
.|++. +++|.|.|++++|+|++++ +|++.|++||++|| |.+++|++|||+|.||+.++++++++.|++.||
T Consensus 346 ~g~~~---~~dG~~~v~v~~~~Grl~~~~~~~~l~~La~iAe~~g--g~iRlT~~Qniil~gv~~e~l~~i~~~L~~~Gl 420 (570)
T 4g38_A 346 IGWVK---GIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK--GDFRITANQNLIIAGVPESEKAKIEKIAKESGL 420 (570)
T ss_dssp CEEEE---CSTTEEEEEECCGGGEECEETTEEHHHHHHHHHHHCS--SEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTT
T ss_pred cCcee---cCCCcEEEEEEecCCeecCCccHHHHHHHHHHHHHhC--CeEEECCCCcEEEecCCHHHHHHHHHHHHHcCC
Confidence 45553 3679999999999999998 69999999999997 899999999999999999999999999999999
Q ss_pred cccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCC-CCceEEEEecCCCCCCcCccCceEEE
Q 047572 202 TSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNL-PRKWNVCVVGSHDLYEHPHINDLAYM 280 (595)
Q Consensus 202 ~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~L-PrKfkI~isgc~~~c~~~~~~DIg~v 280 (595)
. ++.++..||+++||++..|..++.||.+++..|.+.+...+. ...| |.||||+||||++.|+++++.||||+
T Consensus 421 ~--~~~~~~~~~v~aC~G~~~C~~a~~dt~~~a~~L~~~le~~~~----~~~l~p~~iki~vSGCpn~C~~~~~aDIGlv 494 (570)
T 4g38_A 421 M--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMA----KHGVSDEHIVMRVTGCPNGCGRAMLAEVGLV 494 (570)
T ss_dssp T--CCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHH----HTTCTTCCCCEEEESSTTCTTCGGGSSEEEE
T ss_pred C--CCCCCcccCeEECCCCCcccchhHhHHHHHHHHHHHHHHHHh----hcCCCCCceEEEEeCCCchhhhccccceEEE
Confidence 6 556778899999999999999999999877666555543110 1246 99999999999999999999999999
Q ss_pred eEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHhccCCCccchhhHHHHHhhChH
Q 047572 281 PATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIE 353 (595)
Q Consensus 281 ~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~g~r~~R~kaRl~~li~~~G~e 353 (595)
+... + +|+|++||..+.. ..+..+...++.++++++++.+++.|++++... +||..+++|+|++
T Consensus 495 G~~~-g--~y~l~lGG~~~~~--r~g~~~~~~v~~~ei~~~l~~ll~~y~~~r~~~----E~f~~~~~R~G~~ 558 (570)
T 4g38_A 495 GKAP-G--RYNLHLGGNRIGT--RIPRMYKENITEPEILASLDELIGRWAKEREAG----EGFGDFTVRAGII 558 (570)
T ss_dssp EEET-T--EEEEEECCCTTSC--SCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCTT----CCHHHHHHHTTSS
T ss_pred Eecc-c--ceEEEECCcCCCc--ccchhhhcCCCHHHHHHHHHHHHHHHHHhCCCC----CcHHHHHHhcCCc
Confidence 9753 2 7999999988743 456677788999999999999999999988654 5999999999964
No 19
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=97.51 E-value=5.6e-05 Score=78.21 Aligned_cols=92 Identities=23% Similarity=0.334 Sum_probs=70.8
Q ss_pred cceeecCCccccchhhhHHHHHHHHHHHHHHhhhcCCCCceEeeecCC-CCCcccccCcEEEEeEeeecCCCceeccEEE
Q 047572 468 KGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCP-NSCAQVQVADIGFMGCMTRDEDGKTCEGADV 546 (595)
Q Consensus 468 r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~~lp~~~kI~iSGCp-n~Ca~~~~aDIGlvG~~~~~~~G~~~~gy~I 546 (595)
-+++||| +|+-..+|...++.++.+++.. ++.+++|+|-||- |+-+...-||||+.|.+ ....|
T Consensus 269 ~~~ISCP---tCGRt~~dl~~~~~~ie~~l~~---~~~~lkVAVMGCvVNGPGEa~~ADiGiagg~---------~~~~l 333 (366)
T 3noy_A 269 VEIVACP---TCGRIEVDLPKVVKEVQEKLSG---VKTPLKVAVMGCVVNAIGEAREADIGLACGR---------GFAWL 333 (366)
T ss_dssp CEEEECC---CCTTCCSCHHHHHHHHHHHTTT---CCSCCEEEEESSSHHHHHHTTTCSEEEEECS---------SEEEE
T ss_pred CEEEECC---CCCCccccHHHHHHHHHHHHhC---CCCCCEEEEEcccccCCchhhhCCEeEecCC---------CceEE
Confidence 4899998 5666556667777777766654 6778999999999 99999999999999952 35789
Q ss_pred EEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHH
Q 047572 547 FLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFG 584 (595)
Q Consensus 547 ~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~ 584 (595)
|.+|.. +. .++.+++++.+..++.+|..
T Consensus 334 f~~Ge~---------v~-~v~~~~~~~~l~~~I~~~~~ 361 (366)
T 3noy_A 334 FKHGKP---------IK-KVDESEMVDELLKEIQNMEK 361 (366)
T ss_dssp EETTEE---------EE-EEESCHHHHHHHHHHHC---
T ss_pred EECCEE---------ee-ecCHHHHHHHHHHHHHHHHH
Confidence 999854 12 48899999999898876644
No 20
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=97.36 E-value=0.00035 Score=72.31 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCC
Q 047572 187 PDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSH 266 (595)
Q Consensus 187 ~~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~ 266 (595)
+.+.-.++-|+..||-..+ -++++||. |..-.+|...+++++.+++. .+|..+||+|-||.
T Consensus 250 ~Ev~va~~ILqslglR~~g------~~~ISCPt---CGRt~~dl~~~~~~ie~~l~----------~~~~~lkVAVMGCv 310 (366)
T 3noy_A 250 VEVETAYEILKSLGLRRRG------VEIVACPT---CGRIEVDLPKVVKEVQEKLS----------GVKTPLKVAVMGCV 310 (366)
T ss_dssp HHHHHHHHHHHHTTSCCSS------CEEEECCC---CTTCCSCHHHHHHHHHHHTT----------TCCSCCEEEEESSS
T ss_pred HHHHHHHHHHHhcCCCcCC------CEEEECCC---CCCccccHHHHHHHHHHHHh----------CCCCCCEEEEEccc
Confidence 3445556777888886543 27999995 55567899999999998764 37788999999997
Q ss_pred -CCCCcCccCceEEEeEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHH
Q 047572 267 -DLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRD 331 (595)
Q Consensus 267 -~~c~~~~~~DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd 331 (595)
|....+.-.|||+++.. + ...||++|..- ..++.+++++-+..+++-|..
T Consensus 311 VNGPGEa~~ADiGiagg~--~--~~~lf~~Ge~v-----------~~v~~~~~~~~l~~~I~~~~~ 361 (366)
T 3noy_A 311 VNAIGEAREADIGLACGR--G--FAWLFKHGKPI-----------KKVDESEMVDELLKEIQNMEK 361 (366)
T ss_dssp HHHHHHTTTCSEEEEECS--S--EEEEEETTEEE-----------EEEESCHHHHHHHHHHHC---
T ss_pred ccCCchhhhCCEeEecCC--C--ceEEEECCEEe-----------eecCHHHHHHHHHHHHHHHHH
Confidence 66667777899999842 2 67899999421 237888888888777776543
No 21
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=96.80 E-value=0.003 Score=66.40 Aligned_cols=101 Identities=14% Similarity=0.229 Sum_probs=70.8
Q ss_pred cceeecCCccccchhhhHHHHHHHHHHHHHHhhh-----cCC--CCceEeeecCC-CCCcccccCcEEEEeEeeecCCCc
Q 047572 468 KGLVACTGNQFCGQAIIETKARALKVTKEVERLV-----DVT--KPVRMHWTGCP-NSCAQVQVADIGFMGCMTRDEDGK 539 (595)
Q Consensus 468 r~v~AC~G~~~C~~a~~et~~~a~~l~~~l~~~~-----~lp--~~~kI~iSGCp-n~Ca~~~~aDIGlvG~~~~~~~G~ 539 (595)
-+++|||+.+.|.+.++ +.+|.++.++|+..+ ..| .+++|+|=||- |+=+...-||||+.+.. .|.
T Consensus 292 ~~iiSCPtCGRt~~d~~--~~la~~v~~~l~~~~~~~~~~~~~~~~l~VAVMGCvVNGPGEa~~ADiGi~~~G----~G~ 365 (406)
T 4g9p_A 292 PEVTSCPGCGRTTSTFF--QELAEEVSRRLKERLPEWRARYPGVEELKVAVMGCVVNGPGESKHAHIGISLPG----AGE 365 (406)
T ss_dssp CEEEECCCCTTSCHHHH--HHHHHHHHHHHHHHHHHHHHHSTTGGGCEEEEESSTTTHHHHHHHSSEEEECCC----TTS
T ss_pred CCcccCCCCCcCcchHH--HHHHHHHHHHHhhhhhhhhhccCCCCCCEEEEECCcccCcchhhhcCcCcccCC----CCC
Confidence 47999986555555543 346777777776543 123 47999999997 89888899999998642 121
Q ss_pred eeccEEEEEcCcCCCCCcccccccCCCCccCHHHHHHHHHHHHHHh
Q 047572 540 TCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGA 585 (595)
Q Consensus 540 ~~~gy~I~lGG~~g~~~~lg~~~~~~v~~eel~~~l~~ll~~~~~~ 585 (595)
.+.--||..|.. + ..++.+++++.+..++.+|..+
T Consensus 366 -~~~~~lf~~G~~---------~-~~v~~~~iv~~l~~~i~~~~~~ 400 (406)
T 4g9p_A 366 -EPKAPVYADGKL---------L-TILKGEGIAEEFLRLVEDYVKT 400 (406)
T ss_dssp -CSEEEEEETTEE---------E-EEEESSCHHHHHHHHHHHHHHH
T ss_pred -CCeeeEEECCEE---------E-EecCHHHHHHHHHHHHHHHHHH
Confidence 133568887753 1 2488899999998888777654
No 22
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=95.50 E-value=0.012 Score=61.83 Aligned_cols=123 Identities=11% Similarity=0.092 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHcCCcccCCCCCCcCceecCCCCCCCCCCccChH-HHHHHHHHHHHhccCCCCCccCCC--CceEEEEec
Q 047572 188 DVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTR-PYTNLLSHFITANAQGNPTVTNLP--RKWNVCVVG 264 (595)
Q Consensus 188 ~l~~i~~~L~~~GL~t~~a~gd~~RnI~~cP~ag~~~~~~~dt~-~la~~l~~~~~~~~~~~~~~~~LP--rKfkI~isg 264 (595)
.++-.++-|+.+||-..+ -++++||..|.+ .+|.. .+|+++.+++..+.. ......| ..+||+|=|
T Consensus 274 EV~va~~ILqslglR~~~------~~iiSCPtCGRt---~~d~~~~la~~v~~~l~~~~~--~~~~~~~~~~~l~VAVMG 342 (406)
T 4g9p_A 274 EVEVAQEILQALGLRAFA------PEVTSCPGCGRT---TSTFFQELAEEVSRRLKERLP--EWRARYPGVEELKVAVMG 342 (406)
T ss_dssp HHHHHHHHHHHTTSCCCS------CEEEECCCCTTS---CHHHHHHHHHHHHHHHHHHHH--HHHHHSTTGGGCEEEEES
T ss_pred HHHHHHHHHHHhCCcccC------CCcccCCCCCcC---cchHHHHHHHHHHHHHhhhhh--hhhhccCCCCCCEEEEEC
Confidence 466677888999996543 379999976555 45543 477777776643100 0001123 359999999
Q ss_pred CC-CCCCcCccCceEEEeEeecCceeEEEEEcCcCCCccccccccccccCChhcHHHHHHHHHHHHHHh
Q 047572 265 SH-DLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDL 332 (595)
Q Consensus 265 c~-~~c~~~~~~DIg~v~~~~~g~~gf~v~vGG~~g~~~~~~~~~l~~~v~~eev~~~~~ail~~~rd~ 332 (595)
|. |.-..+.-.|||+.+.-..+...--||+.|..- ..++.+++++-+..+++-|-+.
T Consensus 343 CvVNGPGEa~~ADiGi~~~G~G~~~~~~lf~~G~~~-----------~~v~~~~iv~~l~~~i~~~~~~ 400 (406)
T 4g9p_A 343 CVVNGPGESKHAHIGISLPGAGEEPKAPVYADGKLL-----------TILKGEGIAEEFLRLVEDYVKT 400 (406)
T ss_dssp STTTHHHHHHHSSEEEECCCTTSCSEEEEEETTEEE-----------EEEESSCHHHHHHHHHHHHHHH
T ss_pred CcccCcchhhhcCcCcccCCCCCCCeeeEEECCEEE-----------EecCHHHHHHHHHHHHHHHHHH
Confidence 96 555556667999986332222234577777321 2378889998888888877654
No 23
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=33.30 E-value=1.2e+02 Score=28.03 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=54.5
Q ss_pred cccCHHHHHHHHHHHHHhCCCeEEEcCCCceEeeccChhhHHHHHHhhhcCCCCCCCCCCccceeecCCccccchhhhHH
Q 047572 407 GRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIET 486 (595)
Q Consensus 407 Grl~a~ql~~La~iA~~yg~g~irlT~~Qni~l~~I~~~~v~~l~~el~~~g~~~~~~~~~r~v~AC~G~~~C~~a~~et 486 (595)
|.|+.+-+..||+.. +++..++..+..-.. -|...| .....+..|.|. .|.. .-+
T Consensus 39 G~l~~~~~~~iA~~l-------------------~l~~~~V~~VatFY~--~f~~~P-~gk~~I~VC~gt-~C~~--~Ga 93 (181)
T 3i9v_2 39 GWIRPERIEEIARLV-------------------GTTPTEVMGVASFYS--YYQFVP-TGKYHLQVCATL-SCKL--AGA 93 (181)
T ss_dssp SSCCHHHHHHHHHHH-------------------TSCHHHHHHHHTTCS--SCCSSC-CCSEEEEEECSH-HHHT--TTH
T ss_pred CCCCHHHHHHHHHHh-------------------CcCHHHHHHHHhHHh--hcCCCC-CCCEEEEECCCc-hhhh--cCH
Confidence 677777666666543 467777777655221 122222 124678899986 6743 334
Q ss_pred HHHHHHHHHHHHhh---hcCCCCceEeeecCCCCCccc
Q 047572 487 KARALKVTKEVERL---VDVTKPVRMHWTGCPNSCAQV 521 (595)
Q Consensus 487 ~~~a~~l~~~l~~~---~~lp~~~kI~iSGCpn~Ca~~ 521 (595)
..+...|.+.|... ...+.+|++.-++|-..|...
T Consensus 94 ~~i~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~g 131 (181)
T 3i9v_2 94 EELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTA 131 (181)
T ss_dssp HHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGC
T ss_pred HHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCCCccCCC
Confidence 55665665555421 123457899999999999754
No 24
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=26.85 E-value=2.4e+02 Score=28.21 Aligned_cols=91 Identities=12% Similarity=0.188 Sum_probs=53.1
Q ss_pred cCCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCcccCCCCCCcCcee---cCCCCC
Q 047572 145 LPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPV---GNPLAG 221 (595)
Q Consensus 145 ipgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~~a~gd~~RnI~---~cP~ag 221 (595)
-+||.....-+...+.|.+++|..-..|+|.|. -..+.+...+..+.++|+. ||+ +.|-.+
T Consensus 61 gagg~~r~~t~~~a~~i~~~~g~~~v~Hltc~~------~~~~~l~~~L~~~~~~GI~----------nILaLrGDpp~~ 124 (304)
T 3fst_A 61 GANSGERDRTHSIIKGIKDRTGLEAAPHLTCID------ATPDELRTIARDYWNNGIR----------HIVALRGDLPPG 124 (304)
T ss_dssp CTTSSCHHHHHHHHHHHHHHHCCCEEEEEESTT------SCHHHHHHHHHHHHHTTCC----------EEEEECCCCC--
T ss_pred CCCCcchhHHHHHHHHHHHHhCCCeeEEeecCC------CCHHHHHHHHHHHHHCCCC----------EEEEecCCCCCC
Confidence 366654344444445677789987789999874 3566777778888787763 444 233222
Q ss_pred CCCCCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCC
Q 047572 222 IDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHD 267 (595)
Q Consensus 222 ~~~~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~ 267 (595)
. +....++..|.+.|.+. ..|.|++++-|.
T Consensus 125 ~-~~~~~~A~dLv~~ir~~---------------~~f~IgvA~yPE 154 (304)
T 3fst_A 125 S-GKPEMYASDLVTLLKEV---------------ADFDISVAAYPE 154 (304)
T ss_dssp -----CCCHHHHHHHHHHH---------------CCCEEEEEECTT
T ss_pred C-CCCCCCHHHHHHHHHHc---------------CCCeEEEEeCCC
Confidence 1 12345666666655432 137888887654
No 25
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=24.08 E-value=3.1e+02 Score=27.39 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=56.9
Q ss_pred CCCccCHHHHHHHHHHHHHhCCCCeEEecCCCceEEecCCCCCHHHHHHHHHHcCCccc-CCCCCCcCceecCCCCCCCC
Q 047572 146 PNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSL-QSGMDNVRNPVGNPLAGIDP 224 (595)
Q Consensus 146 pgG~lt~~Qlr~la~iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~i~~~L~~~GL~t~-~a~gd~~RnI~~cP~ag~~~ 224 (595)
++|.....-+.....| .++|..-..|+|.|. ...+.+..++..+.+.|+..+ .-.||..+..- ... -.+
T Consensus 52 ~~g~~r~~t~~~a~~i-~~~g~~~i~Hltc~~------~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g--~~~-~~~ 121 (310)
T 3apt_A 52 AMGSTRERSVAWAQRI-QSLGLNPLAHLTVAG------QSRKEVAEVLHRFVESGVENLLALRGDPPRGER--VFR-PHP 121 (310)
T ss_dssp STTCSHHHHHHHHHHH-HHTTCCBCEEEECTT------SCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCC--SCC-CCT
T ss_pred CCCCcchhHHHHHHHH-HHhCCCeEEEeecCC------CCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCC--CCC-CCC
Confidence 5665444444444444 489987788999876 356677888888888886422 11345433211 000 111
Q ss_pred CCccChHHHHHHHHHHHHhccCCCCCccCCCCceEEEEecCCCC
Q 047572 225 EEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDL 268 (595)
Q Consensus 225 ~~~~dt~~la~~l~~~~~~~~~~~~~~~~LPrKfkI~isgc~~~ 268 (595)
...-++..|.+.|.+.. +..|.|++++-|..
T Consensus 122 ~~f~~a~~Lv~~ir~~~-------------g~~f~igvA~yPE~ 152 (310)
T 3apt_A 122 EGFRYAAELVALIRERY-------------GDRVSVGGAAYPEG 152 (310)
T ss_dssp TSCSSHHHHHHHHHHHH-------------GGGSEEEEEECTTC
T ss_pred CCCCCHHHHHHHHHHhC-------------CCCeEEEEEeCCCc
Confidence 22335666666655432 22599999887754
No 26
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=20.49 E-value=1e+02 Score=23.76 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=32.1
Q ss_pred EEEEecCCCccCHHHHHHHHH-----HHHHhCCCCeEEecCCCceEEecCCCCCHHH
Q 047572 140 MMRLKLPNGVTTSEQTRYLAS-----VIKKYGKDGCADVTTRQNWQIRGVVLPDVPE 191 (595)
Q Consensus 140 mvRvripgG~lt~~Qlr~la~-----iA~~yG~~G~l~iTtRq~iql~gI~~~~l~~ 191 (595)
+++|.+..|++|.+|.+.|++ +++.+|. .. .+--+.|+.+..++.--
T Consensus 2 ~I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgi-p~----~~v~V~i~e~~~~~w~~ 53 (76)
T 1gyx_A 2 HIDIKCFPRELDEQQKAALAADITDVIIRHLNS-KD----SSISIALQQIQPESWQA 53 (76)
T ss_dssp EEEEEESCCCCCHHHHHHHHHHHHHHHHHHHTC-CG----GGCEEEEEECCGGGHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCc-CC----ceEEEEEEEeChHHEEE
Confidence 478999999999999988754 3344564 11 24456777777766544
Done!