RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 047572
(595 letters)
>gnl|CDD|178050 PLN02431, PLN02431, ferredoxin--nitrite reductase.
Length = 587
Score = 1137 bits (2942), Expect = 0.0
Identities = 469/590 (79%), Positives = 520/590 (88%), Gaps = 4/590 (0%)
Query: 1 MSSSSSSFSVRFASPLLPSPAAA-TSASPKTWRVHATTPAVAPVTTTSAPEVDAERLEPR 59
+ SS F +S LL S +A SA R A V+P + VDA+RLEPR
Sbjct: 1 SAMSSFRFLCTLSSTLLRSTSARRVSAVRAVEREVAAAATVSP---PATAAVDADRLEPR 57
Query: 60 VEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDI 119
VEERDGY+VLKE+FRKGINPQEKVK+EKEPMKLFMENGIE+LAK EEID++K +KDDI
Sbjct: 58 VEERDGYWVLKEEFRKGINPQEKVKLEKEPMKLFMENGIEELAKTPFEEIDKSKLSKDDI 117
Query: 120 DVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNW 179
DVRLKWLGLFHRRKH YGRFMMRLKLPNGVTTS QTRYLASVI+KYG+DGCADVTTRQNW
Sbjct: 118 DVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSAQTRYLASVIEKYGEDGCADVTTRQNW 177
Query: 180 QIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSH 239
QIRGVVLPDVP ILKGL +VGLTSLQSGMDNVRNPVGNPLAGIDP EIVDTRPYTNLLS
Sbjct: 178 QIRGVVLPDVPAILKGLEEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSD 237
Query: 240 FITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFS 299
+IT N +GNP +TNLPRKWNVCVVGSHDL+EHPHINDLAYMPATKDGRFGFNLLVGGFFS
Sbjct: 238 YITNNGRGNPEITNLPRKWNVCVVGSHDLFEHPHINDLAYMPATKDGRFGFNLLVGGFFS 297
Query: 300 PKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEV 359
PKRCAEAIPLDAWV ADDV+P+CKA+LEA+RDLG RGNRQKTRMMWLIDELG+EGFR+EV
Sbjct: 298 PKRCAEAIPLDAWVPADDVVPLCKAILEAFRDLGTRGNRQKTRMMWLIDELGVEGFRSEV 357
Query: 360 VKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELAR 419
KRMP EL+R +SEDLV ++W+RRDYLGV+PQKQEG SYVGLH+PVGR+QA DMDELAR
Sbjct: 358 EKRMPNGELERAASEDLVDKKWERRDYLGVHPQKQEGLSYVGLHVPVGRLQAADMDELAR 417
Query: 420 LADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFC 479
LAD YGSGELRLTVEQNIIIPNV NSK+EALL EPLL++FSP P +L+KGLVACTGNQFC
Sbjct: 418 LADEYGSGELRLTVEQNIIIPNVPNSKVEALLAEPLLQRFSPNPGLLLKGLVACTGNQFC 477
Query: 480 GQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGK 539
GQAIIETKARALKVT+E+ERLV+V +PVRMHWTGCPNSC QVQVADIGFMGCM RDE+GK
Sbjct: 478 GQAIIETKARALKVTEELERLVEVPRPVRMHWTGCPNSCGQVQVADIGFMGCMARDENGK 537
Query: 540 TCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLRE 589
EGAD+F+GGR+GSDSHL + YKKGVPC +LVP+VADIL+E FGA RE
Sbjct: 538 AVEGADIFVGGRVGSDSHLAEEYKKGVPCDELVPVVADILIEEFGAKERE 587
>gnl|CDD|236572 PRK09566, nirA, ferredoxin-nitrite reductase; Reviewed.
Length = 513
Score = 726 bits (1876), Expect = 0.0
Identities = 284/515 (55%), Positives = 383/515 (74%), Gaps = 12/515 (2%)
Query: 75 KGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKH 134
K +N EK K EK+ L +++ +E A++ E +D + D+++RLKWLG+F R
Sbjct: 10 KKLNKIEKNKAEKD--GLAVKDELEKFAQIGWEAMD-----ETDLELRLKWLGMFWRPVT 62
Query: 135 HYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILK 194
G+FM+RL++PNG+ TSEQ R LAS++++YG DG AD+TTRQN Q+RG++L D+PEIL
Sbjct: 63 P-GKFMLRLRVPNGILTSEQLRVLASIVQRYGDDGSADITTRQNLQLRGILLEDLPEILN 121
Query: 195 GLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNL 254
L VGLTS+QSGMDNVRN G+P+AGIDP+E++DTRP T L +T N +GNP +NL
Sbjct: 122 RLKAVGLTSVQSGMDNVRNITGSPVAGIDPDELIDTRPLTQKLQDMLTNNGEGNPEFSNL 181
Query: 255 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVA 314
PRK+N+ + G D H IND+A++PA KDG GFN+LVGGFFS +RCA AIPL+AWV
Sbjct: 182 PRKFNIAIAGGRDNSVHAEINDIAFVPAYKDGVLGFNVLVGGFFSSQRCAYAIPLNAWVK 241
Query: 315 ADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSE 374
D+V+ +C+A+LE YRD G R NRQK R+MWLIDE GIE FRA V + G L +
Sbjct: 242 PDEVVRLCRAILEVYRDNGLRANRQKGRLMWLIDEWGIEKFRAAVEAQF-GPPLLTAAPG 300
Query: 375 DLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVE 434
D + W++RD++GV+PQKQ G +YVGLH+PVGR+ A+DM ELARLA+ YGSGE+RLTVE
Sbjct: 301 DEI--DWEKRDHIGVHPQKQAGLNYVGLHVPVGRLYAEDMFELARLAEVYGSGEIRLTVE 358
Query: 435 QNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVT 494
QN+IIPN+ + LE L EPLL+KFS +P L +GLV+CTGNQ+C A+IETK RAL +
Sbjct: 359 QNVIIPNIPDENLETFLAEPLLQKFSLEPGPLARGLVSCTGNQYCNFALIETKNRALALA 418
Query: 495 KEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGS 554
KE++ +D+ +PVR+HWTGCPNSC Q QVADIG MG R ++GKT EG D+++GG++G
Sbjct: 419 KELDAELDLPQPVRIHWTGCPNSCGQPQVADIGLMGTKAR-KNGKTVEGVDIYMGGKVGK 477
Query: 555 DSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLRE 589
D+ LG+ +KG+PC+DL P++ D+L+E FGA +
Sbjct: 478 DAKLGECVQKGIPCEDLKPVLKDLLIEQFGAKPKS 512
>gnl|CDD|223233 COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein)
[Inorganic ion transport and metabolism].
Length = 510
Score = 399 bits (1028), Expect = e-133
Identities = 177/511 (34%), Positives = 267/511 (52%), Gaps = 38/511 (7%)
Query: 97 GIEDLAKLS---MEEI-DQAKN------TKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLP 146
E L S I DQ + +DD LK+ GL+ + H FM+R+++P
Sbjct: 8 DNERLKAESNFLRGTIEDQLSDRLSGGLCEDDFRPLLKFDGLYLQEPDHA--FMLRVRIP 65
Query: 147 NGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQS 206
G+ + +Q R LA + ++YG G ++TTRQN Q G+ DVPEIL LA VGL ++ +
Sbjct: 66 GGILSPKQLRALADIARRYG-RGTIELTTRQNIQFHGIRKKDVPEILAELASVGLHTIAT 124
Query: 207 GMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSH 266
D RN G+PLAG+D +EI D RP +L ++ G LPRK+ + V G
Sbjct: 125 AGDVARNVTGDPLAGLDADEIADPRPLAEILRIWL----DGEKGFAYLPRKFKIAVDGGP 180
Query: 267 DLYEHPHINDLAYMPATK-DGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAV 325
D IND+ ++ + DG GFN+LVGG A L +V +DV+ V +A+
Sbjct: 181 DNDVDVLINDIGFVAIKENDGLLGFNVLVGGGLGRTHPKTAPRLAEFVPPEDVLEVVEAI 240
Query: 326 LEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRD 385
+ YRD G R NR+K R+ +L++ LG+E FR EV R+ G+ + + D
Sbjct: 241 VRVYRDYGRRANRKKARLKYLVEALGVEKFRREVEPRL-GKPFEPARPREF----TGNGD 295
Query: 386 YLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNS 445
++G PQK +G ++GL +P GR++A+ + LA A+ G GE+RLT QN+IIPNV +
Sbjct: 296 HIGWVPQK-DGLWHLGLAVPNGRLKAEGLIPLATEAEEIGFGEIRLTPNQNLIIPNVPEA 354
Query: 446 KLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTK 505
+LEA+L+ PS L + +AC G C A+ ET+ A ++ +E L+D
Sbjct: 355 ELEAILRILAALGLVTAPSSLRRNSIACVGLPTCALALAETERDAPRIIARLEDLLDKHG 414
Query: 506 -PVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKK 564
P+ +H +GCPN C + +A+IG + GK G V+LGG + G +Y +
Sbjct: 415 LPITLHISGCPNGCGRPHLAEIGLV--------GKAKGGYQVYLGGG-ADGTRGGKLYGE 465
Query: 565 GVPCKDLVPLVADILVEHFGAVLREREEAED 595
VP + + D L+ + ER E E
Sbjct: 466 NVPA-EEILDAIDRLIGRYAK---ERHEGES 492
>gnl|CDD|236573 PRK09567, nirA, ferredoxin-nitrite reductase; Reviewed.
Length = 593
Score = 323 bits (831), Expect = e-103
Identities = 169/512 (33%), Positives = 262/512 (51%), Gaps = 25/512 (4%)
Query: 75 KGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKH 134
K + QEK K E+ P + +L + K + R K+ GLF+
Sbjct: 63 KKLCDQEKWKREENPFDAW--------DRL-KAQAAAGAFPKPADNFRWKYHGLFYVAPA 113
Query: 135 HYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILK 194
+M RL++PNG+ T Q LA + ++G G + VTTR N Q+R + +L+
Sbjct: 114 Q-DSYMCRLRIPNGILTHWQFAGLADLADRHG-GGYSHVTTRANLQLREIPPEHAVPVLE 171
Query: 195 GLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNL 254
GL +GLT+ SG DN+RN G+P AGIDP+E++DTRPY H I + ++ L
Sbjct: 172 GLVDLGLTARGSGADNIRNVTGSPTAGIDPQELLDTRPYAREWHHHI----LNDRSLYGL 227
Query: 255 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFG------FNLLVGGFFSPKRCAEAIP 308
PRK+NV G + ND+ + G F L++GG K A
Sbjct: 228 PRKFNVAFDGGGRIATLEDTNDIGFQAVRVLEGAGVAPGVYFRLVLGGITGHKDFAR--D 285
Query: 309 LDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQEL 368
+ ++ V A++ + + G R NR+K R+ +++D G + F V +++ G+ L
Sbjct: 286 TGVLLRPEEATAVADAIVRVFIENGDRTNRKKARLKYVLDAWGFDKFLEAVEEKL-GRPL 344
Query: 369 DRGSSEDL-VQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSG 427
R +E + + DR ++GV+PQKQ G +++G+ +PVGR+ D M LA++A YG G
Sbjct: 345 TRVPAEAVAPRPAADRFAHVGVHPQKQPGLNWIGVVLPVGRLTTDQMRGLAKIAARYGDG 404
Query: 428 ELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETK 487
E+RLTV QN++I V ++ + A+ + + S + GLVACTGN C A +TK
Sbjct: 405 EIRLTVWQNLLISGVPDADVAAVEAAIEALGLTTEASSIRAGLVACTGNAGCKFAAADTK 464
Query: 488 ARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVF 547
AL + E V + +PV +H TGC +SCAQ + DIG +G +G T EG +
Sbjct: 465 GHALAIADYCEPRVALDQPVNIHLTGCHHSCAQHYIGDIGLIGAKVAVSEGDTVEGYHIV 524
Query: 548 LGGRIGSDSHLGDIYKKGVPCKDLVPLVADIL 579
+GG G D+ +G + V +D LV +L
Sbjct: 525 VGGGFGEDAAIGREVFRDVKAEDAPRLVERLL 556
>gnl|CDD|233866 TIGR02435, CobG, precorrin-3B synthase. An iron-sulfur protein. An
oxygen atom from dioxygen is incorporated into the
macrocycle at C-20. In the aerobic cobalamin biosythesis
pathway, four enzymes are involved in the conversion of
precorrin-3A to precorrin-6A. The first of the four
steps is carried out by EC 1.14.13.83, precorrin-3B
synthase (CobG), yielding precorrin-3B as the product.
This is followed by three methylation reactions, which
introduce a methyl group at C-17 (CobJ; EC 2.1.1.131),
C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152)
of the macrocycle, giving rise to precorrin-4,
precorrin-5 and precorrin-6A, respectively [Biosynthesis
of cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 390
Score = 179 bits (456), Expect = 8e-51
Identities = 104/392 (26%), Positives = 168/392 (42%), Gaps = 26/392 (6%)
Query: 140 MMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQV 199
++R++LP G T Q LA + ++ G +G +VT R N Q+RG+ D + + L
Sbjct: 19 LVRVRLPGGRLTPAQAIGLADLAERLG-NGIIEVTARGNLQLRGLT-ADHDALSQALLAA 76
Query: 200 GLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWN 259
GL + + D++RN +PLAGIDP EI DTRP L + + + LP K++
Sbjct: 77 GLGAAGAAADDIRNIEVSPLAGIDPGEIADTRPLAAELRAAL----ENERALLELPPKFS 132
Query: 260 VCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVI 319
V + G L D+ T + + + G + + VA D +
Sbjct: 133 VAIDGGGRLVLLGDTADVRLQALTTGAGVAWVVSLAG------ISTSARSLVTVAPDAAV 186
Query: 320 PVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQR 379
PV A+L + +LG R L D V P L ++E R
Sbjct: 187 PVAVALLRVFVELG-----GAARGRDLDDAFLFALALELVEDSRP---LIPDAAEGEAPR 238
Query: 380 Q-WDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNII 438
D LG++PQ G +G + +G++ A + LA+LA A G G+LRLT + ++
Sbjct: 239 PAVDAAAPLGLHPQGDAGV-TLGAGLALGQLTAAQLRGLAQLAQALGDGDLRLTPWRALL 297
Query: 439 IPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVE 498
+ + + +A + S ++ACTG C A+ +T+A A + E
Sbjct: 298 VLGLPPERADAAQRALAALGLVTSASDPRARIIACTGAPGCASALADTRADAEALAAYCE 357
Query: 499 RLVDVTKPVRMHWTGCPNSCAQVQVADIGFMG 530
+T +H +GC CA A I +
Sbjct: 358 PTAPIT----VHLSGCAKGCAHPGPAAITLVA 385
>gnl|CDD|237402 PRK13504, PRK13504, sulfite reductase subunit beta; Provisional.
Length = 569
Score = 178 bits (455), Expect = 6e-49
Identities = 140/508 (27%), Positives = 236/508 (46%), Gaps = 87/508 (17%)
Query: 139 FMMRLKLPNGVTTSEQTRYLA--SVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGL 196
FM+R +LP GV T +Q +LA + +YG +G +TTRQ +Q G++ ++ +++ +
Sbjct: 76 FMLRCRLPGGVITPQQ--WLALDKLADEYG-NGTLRLTTRQTFQFHGILKKNLKPVIQTI 132
Query: 197 AQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLS-HFI-------------- 241
V L +L + D RN + P + + + +S H +
Sbjct: 133 NSVLLDTLAACGDVNRNVMCTP-NPYESRLHAEAYEWAKKISDHLLPRTRAYAEIWLDGE 191
Query: 242 -TANAQGNPT-----VTNLPRKWNVCVV----GSHDLYEHPHINDLAYMPATKDGRF-GF 290
A G T LPRK+ + V D+Y NDL ++ ++G+ GF
Sbjct: 192 KVATFSGTEEEPIYGKTYLPRKFKIAVAVPPDNDVDVYA----NDLGFVAIAENGKLVGF 247
Query: 291 NLLVGGFFS-----PK---RCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTR 342
N+LVGG + R A+ + +V +DV+ V +AV+ RD G R +R+ R
Sbjct: 248 NVLVGGGMGMTHGDKETYPRLADEL---GYVPPEDVLDVAEAVVTTQRDYGNRTDRKNAR 304
Query: 343 MMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGL 402
+ + ++ +G++ F+AEV +R G++L+ + R D LG +G ++ L
Sbjct: 305 LKYTLERVGLDWFKAEVERRA-GKKLEPARPYEF----TGRGDRLGWVEGI-DGKWHLTL 358
Query: 403 HIPVGRVQADD----MDELARLADAYGSGELRLTVEQNIIIPNVDNS---KLEALLKEPL 455
I GR++ L +A + G+ RLT QN+II NV S K+EALL+E
Sbjct: 359 FIENGRIKDYPGRPLKTGLREIAKIH-KGDFRLTANQNLIIANVPPSDKAKIEALLREYG 417
Query: 456 LEKFSPQPSILMKGLVACTGNQFCGQAIIETKARAL-KVTKEVERLV------DVTKPVR 508
L + S L + +AC CG A+ E + R L +E L+ D +R
Sbjct: 418 LID-GVEESPLRRNSMACVALPTCGLAMAEAE-RYLPSFIDRIEALLAKHGLSDEHIVIR 475
Query: 509 MHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGG-RIGSDSHLGDIYKKGVP 567
M TGCPN CA+ +A+IG + GK +++LGG G + L +Y++ +
Sbjct: 476 M--TGCPNGCARPYLAEIGLV--------GKAPGRYNLYLGGSFNG--TRLPKMYRENIT 523
Query: 568 CKDLVPLVADILVEHFGAVLREREEAED 595
++++ + D L+ + +ERE E
Sbjct: 524 EEEILATL-DPLLGRWA---KEREPGEG 547
>gnl|CDD|216287 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain.
Sulphite and nitrite reductases are vital in the
biosynthetic assimilation of sulphur and nitrogen,
respectfully. They are also both important for the
dissimilation of oxidized anions for energy
transduction.
Length = 154
Score = 147 bits (372), Expect = 2e-41
Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 9/161 (5%)
Query: 207 GMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSH 266
DNVRN P AG+ PEE++DTRP + + +LPRK+ + V G
Sbjct: 1 SGDNVRNVTSCPGAGLCPEELIDTRPLAKA----LEDELEDEYGFPDLPRKFKIAVSGCP 56
Query: 267 DLYEHPHINDLAYMPATKDGRF-GFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAV 325
+ H ND+ ++ KDG GFN+LVGG A A +V +DV+ V +A+
Sbjct: 57 NDCVAAHANDIGFIGTEKDGGEIGFNILVGGGLGRTPGAAATLAVGFVPEEDVLEVIEAI 116
Query: 326 LEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQ 366
LE YR R NR+K R+ +LI+ LG+E FR EV +R+ +
Sbjct: 117 LEVYR----RTNRKKERLKYLIERLGLEKFREEVEERLGQK 153
Score = 56.5 bits (137), Expect = 2e-09
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 470 LVACTGNQFCGQAIIETKARALKVTKEVE---RLVDVTKPVRMHWTGCPNSCAQVQVADI 526
+ +C G C + +I+T+ A + E+E D+ + ++ +GCPN C DI
Sbjct: 8 VTSCPGAGLCPEELIDTRPLAKALEDELEDEYGFPDLPRKFKIAVSGCPNDCVAAHANDI 67
Query: 527 GFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAV 586
GF+G +D G ++ +GG +G G ++ V V + ++E +
Sbjct: 68 GFIG-TEKDG---GEIGFNILVGGGLGRTPGAAATLAVGFVPEEDVLEVIEAILEVYRRT 123
Query: 587 LRERE 591
R++E
Sbjct: 124 NRKKE 128
>gnl|CDD|131096 TIGR02041, CysI, sulfite reductase (NADPH) hemoprotein,
beta-component. Sulfite reductase (NADPH) catalyzes a
six electron reduction of sulfite to sulfide in
prokaryotic organisms. It is a complex oligomeric enzyme
composed of two different peptides with a subunit
composition of alpha(8)-beta(4). The alpha component,
encoded by cysJ, is a flavoprotein containing both FMN
and FAD, while the beta component, encoded by cysI, is a
siroheme, iron-sulfur protein. In Salmonella typhimurium
and Escherichia coli, both the alpha and beta subunits
of sulfite reductase are located in a unidirectional
gene cluster along with phosphoadenosine phosphosulfate
reductase, which catalyzes a two step reduction of PAPS
to give free sulfite. In cyanobacteria and plant
species, sulfite reductase ferredoxin (EC 1.8.7.1)
catalyzes the reduction of sulfite to sulfide [Central
intermediary metabolism, Sulfur metabolism].
Length = 541
Score = 126 bits (318), Expect = 9e-31
Identities = 126/530 (23%), Positives = 229/530 (43%), Gaps = 91/530 (17%)
Query: 116 KDDIDVRLKWLGLFHRRKHH---YGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCAD 172
+DD D+R + R + +FM+R +LP GV T +Q + ++YG +G
Sbjct: 42 QDDRDLRAE------RAEQKLEPAYQFMLRCRLPGGVITPKQWLAIDKFAREYG-NGSIR 94
Query: 173 VTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPV--GNPLAGIDPEEIVDT 230
+TTRQ +Q G++ ++ + + + GL S+ + D RN + NP +E +
Sbjct: 95 LTTRQTFQFHGILKRNLKAVHQAIHSAGLDSIATCGDVNRNVLCTSNPYESELHQEAYE- 153
Query: 231 RPYTNLLSHFITANAQGNPTV-------------------TNLPRKWNVCVV----GSHD 267
+ +S + + + T LPRK+ VV D
Sbjct: 154 --WAKKISEHLLPRTRAYHEIWLDEKKVAGTEEVEPIYGPTYLPRKFKTGVVIPPINDVD 211
Query: 268 LYEHPHINDLAYMPATKDGRF-GFNLLVGGFFS-----PKRCAEAIPLDAWVAADDVIPV 321
+Y NDL ++ +G+ GFN+L+GG ++ + + V
Sbjct: 212 VYA----NDLGFVAIADNGKLIGFNVLIGGGLGMTHGNKATYPRLANEIGFIPPEHTLAV 267
Query: 322 CKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQW 381
+A++ RD G R +R+ R + ID +G++ F+AEV +R G L+
Sbjct: 268 AEAIVTTQRDFGNRTDRKNARTKYTIDRMGLDTFKAEVERRA-GITLEPARPYVFT---- 322
Query: 382 DRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMD--------ELARLADAYGSGELRLTV 433
R D G + + +G ++ L I GR+ AD D E+A++ G+ R+T
Sbjct: 323 HRGDRYG-WVKGIDGNWHLTLFIESGRI-ADYPDKPLMTGLREIAKI----HKGDFRITP 376
Query: 434 EQNIIIPNV---DNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARA 490
QN+II NV +K+EAL ++ L + + L + +AC C A+ E +
Sbjct: 377 NQNLIIANVPEGGKAKIEALARQYGL--IDGKVTALRRNSMACVALPTCPLAMAEAERYL 434
Query: 491 LKVTKEVERLVD----VTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADV 546
+++ +++ + + + TGCPN C + +A+IG + GK ++
Sbjct: 435 PDFIDKLDNIMEKHGLADEEIVLRMTGCPNGCGRPYLAEIGLV--------GKAPGRYNL 486
Query: 547 FLGG-RIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLREREEAED 595
LGG R G L +Y++ + +++ + ++L G ER+ E
Sbjct: 487 MLGGNRRG--QRLPRLYRENITEPEILAELDELL----GRYAAERKPGEG 530
>gnl|CDD|177773 PLN00178, PLN00178, sulfite reductase.
Length = 623
Score = 117 bits (296), Expect = 9e-28
Identities = 134/595 (22%), Positives = 240/595 (40%), Gaps = 122/595 (20%)
Query: 6 SSFSVRFASPLLPSPAAATSASPKTWRVHATTPAVAPVTTTSAPEVDAERLEPRVEERDG 65
S S + L AA T+ S R + + V T +VE
Sbjct: 2 SKSSSAVSLLLARQSAATTAFSTGPSRSRSGRLVIRAVATPVKKPTTEPPKRSKVE---- 57
Query: 66 YFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKW 125
++KE + P+ E+LA +A N +D +K+
Sbjct: 58 --IIKEN----------SNFLRHPL-------NEELA-------TEAPNINEDAVQLIKF 91
Query: 126 LGLFHR-----RKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQ 180
G + + R +FM+R K P G + + + ++G G +TTRQ +Q
Sbjct: 92 HGSYQQDNREKRGGKAYQFMLRTKQPAGKVPNRLYLVMDDLADEFG-IGTLRLTTRQTFQ 150
Query: 181 IRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNP---------------------- 218
+ GV+ D+ ++ + + ++L + D RN +
Sbjct: 151 LHGVLKKDLKTVMSSIIKNMGSTLGACGDVNRNVLAPAAPFARKDYLFAQELAKNIAALL 210
Query: 219 ----------------LAGIDPEEIVDTRPYTNLLSHFITANAQGNPT----VTNLPRKW 258
+ +P E+ R N SH N + +P LPRK+
Sbjct: 211 APQSGAYYDIWVDGEKIMSAEPPEVTKAR---NDNSHGT--NFEDSPEPIYGTQFLPRKF 265
Query: 259 NVCVV----GSHDLYEHPHINDLAYMPATKDG--RFGFNLLVGGFF--------SPKRCA 304
+ V S D+ ND+ + + + G+N+ VGG + R A
Sbjct: 266 KIAVTVPGDNSVDIL----TNDIGVVVVSDEAGEPQGYNIYVGGGMGRTHRNETTFPRLA 321
Query: 305 EAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMP 364
+ + +V +D++ KA++ RD G R +R+++RM +L+ GIE FR+ VV++
Sbjct: 322 DPL---GYVPKEDILYAVKAIVATQRDYGRRDDRKQSRMKYLVHSWGIEKFRS-VVEQYY 377
Query: 365 GQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAY 424
G++ + +L +W+ + YLG + Q +G + G+H+ GR++ + L + + Y
Sbjct: 378 GKKFE--PFRELP--EWEFKSYLGWHEQG-DGKLFYGVHVDNGRIKGEAKKALREVIEKY 432
Query: 425 GSGELRLTVEQNIIIPNVDNS---KLEALLKEP-LLEKFSPQPSILMKGLVACTGNQFCG 480
+ +RLT QN+I+ ++ + + A L LLE P L + +AC C
Sbjct: 433 -NLPVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPEEVDP--LNRTAMACPALPLCP 489
Query: 481 QAIIETKARALKVTKEVERLVD-----VTKPVRMHWTGCPNSCAQVQVADIGFMG 530
AI E + + K V + + + V + TGCPN CA+ +A++GF+G
Sbjct: 490 LAITEAERGIPDILKRVRAMFNKVGLKYDESVVVRMTGCPNGCARPYMAELGFVG 544
>gnl|CDD|131097 TIGR02042, sir, ferredoxin-sulfite reductase. Distantly related to
the iron-sulfur hemoprotein of sulfite reductase (NADPH)
found in Proteobacteria and Eubacteria, sulfite
reductase (ferredoxin) is a cyanobacterial and plant
monomeric enzyme that also catalyzes the reduction of
sulfite to sulfide [Central intermediary metabolism,
Sulfur metabolism].
Length = 577
Score = 108 bits (272), Expect = 7e-25
Identities = 124/464 (26%), Positives = 199/464 (42%), Gaps = 96/464 (20%)
Query: 139 FMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQ 198
FM+R K P G + L + +YG +G TTRQ +Q+ G++ ++ ++ + +
Sbjct: 66 FMLRTKNPGGYVPPQLYLTLDDLADEYG-NGTLRATTRQTFQLHGILKKNLKTVISTIVK 124
Query: 199 VGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTN----LLS--------------HF 240
++L + D RN + P E R Y + LL+
Sbjct: 125 NLGSTLGACGDLNRNVMAPPAPFRKRPEYEFAREYADNIADLLTPQSGAYYELWLDGEKV 184
Query: 241 ITANA--------QGNPTVTN-------------LPRKWNVCVV----GSHDLYEHPHIN 275
++A N TN LPRK+ + V S DL+
Sbjct: 185 MSAEPDPEVVAARNDNSHGTNFADSPEPLYGTQYLPRKFKIAVTVPGDNSIDLFT----Q 240
Query: 276 DLAYMPAT-KDGRF-GFNLLVGGFFSPKRCAE------AIPLDAWVAADDVIPVCKAVLE 327
D+ + + + G GFN+ VGG E A PL +V +D+ KA++
Sbjct: 241 DIGLVVVSNERGELEGFNIYVGGGMGRTHNKEETFARLADPL-GYVPKEDIYYAVKAIVA 299
Query: 328 AYRDLGFRGNRQKTRMMWLIDELGIEGFRAEV-----VKRMPGQELDRGSSEDLVQRQWD 382
RD G R +R+ RM +LI + GIE FR V K P +EL +++
Sbjct: 300 TQRDYGDRDDRRHARMKYLISDWGIEKFREVVEQYFGKKIAPVRELP----------EFE 349
Query: 383 RRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELAR----LADAYGSGELRLTVEQNII 438
+DYLG + Q +G ++GLHI GRV+ D +L + + + Y + +RLT QNII
Sbjct: 350 YKDYLGWHEQG-DGKWFLGLHIDSGRVKDDGNWQLKKALREIVEKY-NLPVRLTPNQNII 407
Query: 439 IPNV---DNSKLEALLKEPLLEKFSPQPSI---LMKGLVACTGNQFCGQAIIETKARALK 492
+ ++ + +L + + QP L + +AC CG AI E++
Sbjct: 408 LYDIQPEWKRAITTVLAQRGVL----QPEAIDPLNRYAMACPALPTCGLAITESERAIPG 463
Query: 493 VTKEVERLV------DVTKPVRMHWTGCPNSCAQVQVADIGFMG 530
+ K + L+ D VRM TGCPN CA+ +A++GF+G
Sbjct: 464 ILKRIRALLEKVGLPDEHFVVRM--TGCPNGCARPYMAELGFVG 505
>gnl|CDD|217572 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like
half domain. Sulfite and Nitrite reductases are key to
both biosynthetic assimilation of sulfur and nitrogen
and dissimilation of oxidized anions for energy
transduction. Two copies of this repeat are found in
Nitrite and Sulfite reductases and form a single
structural domain.
Length = 67
Score = 80.3 bits (199), Expect = 9e-19
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 390 YPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEA 449
+PQK + V + +P GR+ A+ + LA +A+ YG GE+RLT QN+ + V L A
Sbjct: 1 HPQKDGDY-MVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPA 59
Query: 450 LLKE 453
LL+E
Sbjct: 60 LLEE 63
Score = 72.9 bits (180), Expect = 3e-16
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 137 GRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGL 196
G +M+R+++P G T+EQ R LA + +KYG DG +TTRQN ++ GV D+P +L+ L
Sbjct: 6 GDYMVRVRVPGGRLTAEQLRALADIAEKYG-DGEIRLTTRQNLELHGVPEEDLPALLEEL 64
Query: 197 AQV 199
A+
Sbjct: 65 AEA 67
>gnl|CDD|225131 COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin),
alpha and beta subunits [Energy production and
conversion].
Length = 317
Score = 84.7 bits (210), Expect = 6e-18
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 385 DYLGVYPQKQEGFSY-VGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVD 443
GV ++ ++ V P G + A+ + ++A +A+ YG G + +T Q + IP +
Sbjct: 18 VGYGVIKRRDGTYTVRVRTP-PGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGIS 76
Query: 444 NSKLEALLKEPLLEK--FSP-QPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERL 500
+ +++E L + ++ +VAC G + C A+ +T A ++ +E
Sbjct: 77 PEDADDVVEE--LREIGLPVGSTGPAVRAIVACPGPRTCETALYDTTELARRLEEEFLE- 133
Query: 501 VDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEG 543
V V ++ +GCPN C + Q DIG +G D + C G
Sbjct: 134 VPVPYKFKIAVSGCPNDCTRPQAHDIGIVGVWKPKVDEELCRG 176
Score = 63.9 bits (156), Expect = 4e-11
Identities = 62/299 (20%), Positives = 102/299 (34%), Gaps = 68/299 (22%)
Query: 116 KDDIDVRLKWLGLFHRRKHHYGR--------FMMRLKLP-NGVTTSEQTRYLASVIKKYG 166
K I W K+ + +R++ P G ++E R +A + +KYG
Sbjct: 6 KKLIKKNAYW-------KYVGYGVIKRRDGTYTVRVRTPPGGFLSAETLRKIADIAEKYG 58
Query: 167 KDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPV---GNPL---A 220
DG +T+RQ +I G+ D ++++ L ++GL +G VR V G A
Sbjct: 59 -DGLIHITSRQGLEIPGISPEDADDVVEELREIGLPVGSTG-PAVRAIVACPGPRTCETA 116
Query: 221 GIDPEEIVDTRPYTNLLS-----HFITA-----NAQGNPTVTNL-------PRKW----- 258
D E+ R L F A N P ++ P+
Sbjct: 117 LYDTTELAR-RLEEEFLEVPVPYKFKIAVSGCPNDCTRPQAHDIGIVGVWKPKVDEELCR 175
Query: 259 ------NVCVVGSHDLYEHP------------HINDLAYMPATKDGRFGFNLLVGGFFSP 300
VC G+ A + + G +LVGG
Sbjct: 176 GCGKCVKVCPTGAITWDGKKLKIDGSKCIGCGKCIRACPKAAFRGEKVGIAILVGGKTGR 235
Query: 301 KRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEV 359
+ PL D++I + K +E +R+ + R+ ID +G E F E+
Sbjct: 236 ELGRVGKPLVPVEDEDEIIDIIKKTIEVWREYAEKPGE---RIGDFIDRVGFEKFLEEI 291
>gnl|CDD|131958 TIGR02912, sulfite_red_C, sulfite reductase, subunit C. Members of
this protein family include the C subunit, one of three
subunits, of the anaerobic sulfite reductase of
Salmonella, and close homologs from various Clostridum
species, where the three-gene neighborhood is preserved.
Two such gene clusters are found in Clostridium
perfringens, but it may be that these sets of genes
correspond to the distinct assimilatory and
dissimilatory forms as seen in Clostridium pasteurianum.
Note that any one of these enzymes may have secondary
substates such as NH2OH, SeO3(2-), and SO3(2-).
Heterologous expression of the anaerobic sulfite
reductase of Salmonella confers on Escherichia coli the
ability to produce hydrogen sulfide gas from sulfite
[Central intermediary metabolism, Sulfur metabolism].
Length = 314
Score = 70.3 bits (172), Expect = 4e-13
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 21/165 (12%)
Query: 393 KQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVD-------NS 445
K G + + + +P G + A + L +A+ YG+G++ +T Q IP + N
Sbjct: 16 KVRGKTAIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNK 75
Query: 446 KLEALLKEPLLEKFSPQPSILMKG---LVACTGNQFCGQAIIETKARALKVTKEVERLVD 502
L+ +++ + + Q G + AC GN+ C A +T K K +E+ V
Sbjct: 76 ALQPIIEGLEINQEDVQKGYSASGTRNITACIGNRVCPFANYDTT----KFAKRIEKAV- 130
Query: 503 VTKPVRMHW----TGCPNSCAQVQVADIGFMGCMTRDEDGKTCEG 543
P H TGCPN CA+ ++ D G +G D C G
Sbjct: 131 --FPNDYHVKIALTGCPNDCAKARMHDFGIIGMTEPQYDADRCIG 173
Score = 38.3 bits (89), Expect = 0.007
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 131 RRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVP 190
R G+ +R+++P G+ ++ L ++ + YG +G +TTRQ ++I G+ D+
Sbjct: 13 RVTKVRGKTAIRVRVPGGILPAKYLSVLQNIAETYG-NGKVHITTRQGFEIPGIRFEDID 71
Query: 191 E-------ILKGL----AQVGLTSLQSGMDNVRNPVGN 217
E I++GL V SG N+ +GN
Sbjct: 72 EVNKALQPIIEGLEINQEDVQKGYSASGTRNITACIGN 109
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 60.4 bits (147), Expect = 2e-09
Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 392 QKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALL 451
QK +S V +P G +++ +A +A+ Y +++T Q I + V L A+
Sbjct: 548 QKDGTYSVVP-RMPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIW 606
Query: 452 KEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHW 511
+ L ++ + C G+ FC ++ +++ K E L V+M
Sbjct: 607 AD-LGMASGHAYGKALRTVKTCVGSTFCRFGTQDSVGLGIRLEKRYEGL-RTPHKVKMAV 664
Query: 512 TGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDL 571
+GCP +CA+ + D+G +G T +G ++++GG G D+ K
Sbjct: 665 SGCPRNCAEAGIKDVGIIG---------TEKGWNLYVGGNGGMKPRHADLLAKV------ 709
Query: 572 VPLVADILVEHFGAVLR-EREEAE 594
L + ++E+ A L+ RE A+
Sbjct: 710 --LTEEEVLEYIDAFLQYYRETAD 731
Score = 41.1 bits (97), Expect = 0.002
Identities = 63/268 (23%), Positives = 95/268 (35%), Gaps = 49/268 (18%)
Query: 144 KLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQV---- 199
++P GVT E+ R +A V +KY +T Q + GV D+P I L
Sbjct: 558 RMPGGVTNPEELRAIADVAEKYNL-PTVKITGGQRIDLLGVKKEDLPAIWADLGMASGHA 616
Query: 200 ---GLTSLQS--GMDNVRNPVGNPLA-GIDPEEIVDTRPYTNLLSHFITANAQGNPTVTN 253
L ++++ G R + + GI E + Y L
Sbjct: 617 YGKALRTVKTCVGSTFCRFGTQDSVGLGIRLE-----KRYEGL----------------R 655
Query: 254 LPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPK-RCAEAIPLDAW 312
P K + V G I D+ + K G+NL VGG K R A+ +
Sbjct: 656 TPHKVKMAVSGCPRNCAEAGIKDVGIIGTEK----GWNLYVGGNGGMKPRHADLLAKVL- 710
Query: 313 VAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPG--QELDR 370
++V+ A L+ YR+ R W +D LG+E + V+ G L+R
Sbjct: 711 -TEEEVLEYIDAFLQYYRETADYLERTAP---W-LDRLGLEHIKEVVLDDPEGRKALLER 765
Query: 371 G-SSEDLVQRQWDRRDYLGVYPQKQEGF 397
Q W PQ Q+ F
Sbjct: 766 EMFRLKFAQDPWKET---VEDPQAQKRF 790
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 46.4 bits (110), Expect = 4e-05
Identities = 33/173 (19%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Query: 392 QKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALL 451
QK +S + + GR + + +A +A+AY +++T Q + + L +
Sbjct: 549 QKDGTYSVIP-RMYGGRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIW 607
Query: 452 KEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHW 511
K+ + + ++ + C G+Q+C ++ A+++ + E L +++
Sbjct: 608 KDLKMPGYEHAYGKALRTVKTCVGSQWCRYGNQDSVQLAIQLERRYEGL-RTPHKIKIGV 666
Query: 512 TGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKK 564
+GC CA+ D+G + T +G ++++GG G+ GD+
Sbjct: 667 SGCERECAEAAGKDVGVIA---------TEKGWNLYVGGNGGTHPRHGDLLAV 710
Score = 29.8 bits (67), Expect = 5.7
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 144 KLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLT 202
++ G T EQ R +A++ + Y +T Q + G D+P I K L G
Sbjct: 559 RMYGGRTNPEQLRTIANIAEAYSIP-YVKITGGQRLDLFGAKKDDLPNIWKDLKMPGYE 616
>gnl|CDD|131121 TIGR02066, dsrB, sulfite reductase, dissimilatory-type beta
subunit. Dissimilatory sulfite reductase catalyzes the
six-electron reduction of sulfite to sulfide, as the
terminal reaction in dissimilatory sulfate reduction. It
remains unclear however, whether trithionate and
thiosulfate serve as intermediate compounds to sulfide,
or as end products of sulfite reduction. Sulfite
reductase is a multisubunit enzyme composed of dimers of
either alpha/beta or alpha/beta/gamma subunits, each
containing a siroheme and iron sulfur cluster prosthetic
center. Found in sulfate-reducing bacteria, these genes
are commonly located in an unidirectional gene cluster.
This model describes the beta subunit of sulfite
reductase [Central intermediary metabolism, Sulfur
metabolism].
Length = 341
Score = 42.9 bits (101), Expect = 3e-04
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 9/130 (6%)
Query: 408 RVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEK----FSPQP 463
+ D + +L +AD Y G LR T+ N+ D SK++ L+ E LE+
Sbjct: 40 LLSVDTLRKLCDIADKYSDGYLRWTIRNNVEFLVSDESKIQPLIDE--LEEVGFPVGGTG 97
Query: 464 SILMKGLVACTGNQFCGQAIIETKARALKVTKEV-ERLVDVTKPVRMHWT--GCPNSCAQ 520
+ +V G C I+ V E+ E D P + + C N C
Sbjct: 98 DAVKGNIVHTQGWLHCHIPAIDASGIVKAVMDELYEYFTDHKLPAMVRISLSCCANMCGG 157
Query: 521 VQVADIGFMG 530
V +DI +G
Sbjct: 158 VHASDIAIVG 167
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 33.9 bits (78), Expect = 0.23
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 2 SSSSSSFSVRFASPLLPSPAAATSASPKTWRVHATTPAVAPVTTTSAPEVDAERLEP 58
++++ + + AAA +A+P A PA AP SAP P
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPP 423
Score = 28.9 bits (65), Expect = 9.4
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 8 FSVRFASPLLPSPAAATSASPKTWRVHATTPAVAPVTTTSAPEVDAER 55
F A+ T A P+ A PA APV +A A
Sbjct: 364 FKPAAAAEAAAPAEKKTPARPE-----AAAPAAAPVAQAAAAPAPAAA 406
>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated.
Length = 256
Score = 32.0 bits (73), Expect = 0.62
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 69 LKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLA 102
++ K + + +++ + +KE M+L+ I LA
Sbjct: 103 IQAKLKVTKDLEKQKEYQKEMMELYKSGNINPLA 136
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 31.8 bits (72), Expect = 1.3
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 18 PSPAAATSASPKTWRVHATTPAVAPVTTTSAPEVDAERLEPR 59
AA S+ P+ R A P V +T+ + P EP
Sbjct: 2670 LGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPA 2711
>gnl|CDD|188477 TIGR03962, mycofact_rSAM, mycofactocin radical SAM maturase.
Members of this family are uncharacterized radical SAM
proteins from the Mycobacterium tuberculosis and many
other Actinobacteria, as well as some
deltaproteobacteria (e.g. Geobacter uraniireducens),
firmicutes (Pelotomaculum thermopropionicum and
Desulfotomaculum acetoxidans), and Chloroflexi
(Thermomicrobium roseum DSM 5159 and Sphaerobacter
thermophilus DSM 20745). They resemble several
characterized radical SAM enzymes of peptide
modification (PqqE, AlbA), and are always found next to
the proposed target, TIGR03969, the putative
mycofactocin precursor [Unknown function, Enzymes of
unknown specificity].
Length = 339
Score = 31.4 bits (71), Expect = 1.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 396 GFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLT 432
GF + + + R +DE LAD YG+ +LRLT
Sbjct: 148 GFRGFKISVVLTRRNFGQLDEFYALADRYGA-QLRLT 183
>gnl|CDD|223000 PHA03144, PHA03144, helicase-primase primase subunit; Provisional.
Length = 746
Score = 30.9 bits (70), Expect = 2.3
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 21 AAATSASPKTWR--VHATTPAVAPVTTTSAPEVDAERLEPRVEERDGYFVL 69
A A A + W V A A+ P+ PE LEPR EE D + VL
Sbjct: 272 APALMALYRQWHATVFAAPGALVPIFAFLGPE-----LEPRGEEVDYFCVL 317
>gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons confer
the ability to use somewhat different profiles of C-P
bond-containing compounds (see PMID:15231805), including
phosphites as well as phosphonates. PhnN in E. coli
shows considerable homology to guanylate kinases (EC
2.7.4.8), and has actually been shown to act as a ribose
1,5-bisphosphokinase (PRPP forming). This suggests an
analogous kinase reaction for phosphonate metabolism,
converting 5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP [Central intermediary metabolism,
Phosphorus compounds].
Length = 179
Score = 29.6 bits (67), Expect = 2.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 38 PAVAPVTTTSAPEVDAERLEPRVEERDG 65
P + V T++P+V A+RL R E
Sbjct: 110 PNLLVVNITASPDVLAQRLAARGRESRE 137
>gnl|CDD|234263 TIGR03568, NeuC_NnaA, UDP-N-acetyl-D-glucosamine 2-epimerase,
UDP-hydrolysing. This family of enzymes catalyzes the
combined epimerization and UDP-hydrolysis of
UDP-N-acetylglucosamine to N-acetylmannosamine. This is
in contrast to the related enzyme WecB (TIGR00236) which
retains the UDP moiety. NeuC acts in concert with NeuA
and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Length = 365
Score = 30.2 bits (69), Expect = 3.1
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 172 DVTTRQNWQIRGV----VLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEI 227
++ TRQ ++R V PD EI+K + ++ + + + NV+NP G+ + E I
Sbjct: 305 NIGTRQKGRLRADSVIDVDPDKEEIVKAIEKLLDPAFKKSLKNVKNPYGDGNSS---ERI 361
Query: 228 VDT 230
++
Sbjct: 362 IEI 364
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 30.1 bits (68), Expect = 4.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 138 RFMMRLKLPNGVTTSEQTRYLASVIK 163
RF L+ P V+ SE+ Y+ VIK
Sbjct: 858 RFSAYLRQPKSVSKSEKMEYVEEVIK 883
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 29.0 bits (66), Expect = 5.0
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 57 EPRVEERDG---YFVLKEKFRKGI 77
+PR E DG +FV KE+F + I
Sbjct: 37 KPRPGEVDGVDYFFVSKEEFEEMI 60
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 28.9 bits (66), Expect = 5.5
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 57 EPRVEERDG---YFVLKEKFRKGIN 78
PR E DG +FV KE+F + I
Sbjct: 42 APRPGEVDGVDYFFVSKEEFEEMIE 66
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. This model describes the P-type ATPase
primarily responsible for translocating copper ions
accross biological membranes. These transporters are
found in prokaryotes and eukaryotes. This model
encompasses those species which pump copper ions out of
cells or organelles (efflux pumps such as CopA of
Escherichia coli ) as well as those which pump the ion
into cells or organelles either for the purpose of
supporting life in extremely low-copper environments
(for example CopA of Enterococcus hirae ) or for the
specific delivery of copper to a biological complex for
which it is a necessary component (for example FixI of
Bradyrhizobium japonicum, or CtaA and PacS of
Synechocystis). The substrate specificity of these
transporters may, to a varying degree, include silver
ions (for example, CopA from Archaeoglobus fulgidus).
Copper transporters from this family are well known as
the genes which are mutated in two human disorders of
copper metabolism, Wilson's and Menkes' diseases. The
sequences contributing to the seed of this model are all
experimentally characterized. The copper P-type ATPases
have been characterized as Type IB based on a
phylogenetic analysis which combines the
copper-translocating ATPases with the
cadmium-translocating species. This model and that
describing the cadmium-ATPases (TIGR01512) are well
separated, and thus we further type the copper-ATPases
as IB1 (and the cadmium-ATPases as IB2). Several
sequences which have not been characterized
experimentally fall just below the cutoffs for both of
these models. A sequence from Enterococcus faecalis
scores very high against this model, but yet is
annotated as an "H+/K+ exchanging ATPase". BLAST of this
sequence does not hit anything else annotated in this
way. This error may come from the characterization paper
published in 1987. Accession GP|7415611 from
Saccharomyces cerevisiae appears to be mis-annotated as
a cadmium resistance protein. Accession
OMNI|NTL01HS00542 from Halobacterium which scores above
trusted for this model is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 572
Score = 29.5 bits (67), Expect = 5.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 309 LDAWVAADDVI-PVCKAVLEAYRDLGFR-----GNRQKTRMMWLIDELGIEGFRAEV 359
L +A D + P K V++A + G G+ +KT + ELGIE RAEV
Sbjct: 405 LAGVLALADQLKPEAKEVIQALKRRGIEPVMLTGDNRKT-AKAVAKELGIENVRAEV 460
>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of
glycosyl hydrolase family 16. Xyloglucan
endotransglycosylases (XETs) cleave and religate
xyloglucan polymers in plant cell walls via a
transglycosylation mechanism. Xyloglucan is a soluble
hemicellulose with a backbone of beta-1,4-linked glucose
units, partially substituted with alpha-1,6-linked
xylopyranose branches. It binds noncovalently to
cellulose, cross-linking the adjacent cellulose
microfibrils, giving it a key structural role as a
matrix polymer. Therefore, XET plays an important role
in all plant processes that require cell wall
remodeling.
Length = 263
Score = 29.1 bits (66), Expect = 6.1
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 9/33 (27%)
Query: 133 KHHYGRFMMRLKLPNG-----VTTSEQTRYLAS 160
K+ +G F MR+KLP G VT YL+S
Sbjct: 45 KYLFGFFSMRIKLPPGDSAGTVTAF----YLSS 73
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 29.5 bits (66), Expect = 6.6
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 139 FMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGV 184
F L+LP +T E+ SVI + G C + T N IRG+
Sbjct: 163 FCSLLRLPKSLTKQEKILVAESVISELGLTKCEN-TIIGNSFIRGI 207
>gnl|CDD|179635 PRK03708, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 277
Score = 28.9 bits (65), Expect = 6.8
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 32 RVHATTPA-VAPVTTTSAPEVDAE----RLEPRVEERDGYFVLKEKFRKGINPQEKVKIE 86
R+ A A + P +S P V ++ R+ V+ ++ + + P ++ I+
Sbjct: 191 RLDAILIAPLCPFKLSSRPMVVPSSSRIDVKLLRTGREIILVIDGQYYEELPPDTEITIK 250
Query: 87 KEPMK 91
K P K
Sbjct: 251 KSPRK 255
>gnl|CDD|234780 PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Validated.
Length = 339
Score = 28.9 bits (66), Expect = 7.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 94 MENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLG 127
M +E+L + ++ I A + + +R+K+LG
Sbjct: 1 MMEDLEELVEEALAAIAAASDLEALEALRVKYLG 34
>gnl|CDD|236518 PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed.
Length = 479
Score = 29.1 bits (66), Expect = 8.2
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 329 YRDLGFRGNRQKTRMM----WLIDELGIEGFRAEVVKRMP 364
D+ FR + + W ++ G +GFR + VK +
Sbjct: 200 GADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHID 239
>gnl|CDD|236782 PRK10871, nlpD, lipoprotein NlpD; Provisional.
Length = 319
Score = 28.6 bits (64), Expect = 8.3
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 13 ASPLLPS--PAAATSASPKTWRVHATTPAVAPVTTTSAP 49
A+ +LP+ PAA T +P T +TT A T+TS P
Sbjct: 158 ANKMLPNNKPAATTVTAPVTAPTASTTEPTASSTSTSTP 196
>gnl|CDD|220173 pfam09311, Rab5-bind, Rabaptin-like protein. Members of this
family are predominantly found in Rabaptin and allow for
binding to the GTPase Rab5. This interaction is
necessary and sufficient for Rab5-dependent recruitment
of Rabaptin5 to early endosomal membranes.
Length = 180
Score = 28.1 bits (63), Expect = 8.4
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 79 PQEKVKIEKEPMKLFMENGIEDL-AKLSME----EIDQAKNTKDDIDVRLKWL 126
+E++K E +P+K N E+L A++ + E DQ + + +I RL+ L
Sbjct: 90 LEEELKSEIDPLKELKPNLEEELAAEIELPQIQSEKDQLQASLYEIPARLRTL 142
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 29.0 bits (65), Expect = 8.8
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 13 ASPLLPSPAAATSASPKTWRVHATTPAVAPVTT--TSAPEVDAERLEP 58
A+ PS AAA S SP A A T + P V +
Sbjct: 387 AAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAA 434
>gnl|CDD|118190 pfam09658, Cas_Csx9, CRISPR-associated protein (Cas_Csx9).
Clusters of short DNA repeats with nonhomologous
spacers, which are found at regular intervals in the
genomes of phylogenetically distinct prokaryotic
species, comprise a family with recognisable features.
This family is known as CRISPR (short for Clustered,
Regularly Interspaced Short Palindromic Repeats). A
number of protein families appear only in association
with these repeats and are designated Cas
(CRISPR-Associated) proteins. This entry describes
archaeal proteins encoded in cas gene regions.
Length = 377
Score = 28.7 bits (64), Expect = 9.6
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 450 LLKEPLLEKFSPQ--PSILMKGLVACTGNQFCGQAIIETKAR-----ALKVTKEVERLVD 502
L+ +P +E F P I+ G++ T G+ ++T+ A+K+ +E ++++
Sbjct: 167 LMTKPGIEVFWPYEVEEIIEDGILPLTDAGASGRISLDTEELYEMKLAMKLAEEGRKVIE 226
Query: 503 VTKPVRMH 510
PV +H
Sbjct: 227 EVYPVTLH 234
>gnl|CDD|187876 cd09745, Cas8a2_I-A, CRISPR/Cas system-associated protein Csa8a2.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as Csx9 family.
Length = 377
Score = 28.7 bits (64), Expect = 9.6
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 450 LLKEPLLEKFSPQ--PSILMKGLVACTGNQFCGQAIIETKAR-----ALKVTKEVERLVD 502
L+ +P +E F P I+ G++ T G+ ++T+ A+K+ +E ++++
Sbjct: 167 LMTKPGIEVFWPYEVEEIIEDGILPLTDAGASGRISLDTEELYEMKLAMKLAEEGRKVIE 226
Query: 503 VTKPVRMH 510
PV +H
Sbjct: 227 EVYPVTLH 234
>gnl|CDD|187829 cd09698, Cas8a2_I-A, CRISPR/Cas system-associated protein Csa8a2.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as Csx9 family.
Length = 377
Score = 28.7 bits (64), Expect = 9.6
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 450 LLKEPLLEKFSPQ--PSILMKGLVACTGNQFCGQAIIETKAR-----ALKVTKEVERLVD 502
L+ +P +E F P I+ G++ T G+ ++T+ A+K+ +E ++++
Sbjct: 167 LMTKPGIEVFWPYEVEEIIEDGILPLTDAGASGRISLDTEELYEMKLAMKLAEEGRKVIE 226
Query: 503 VTKPVRMH 510
PV +H
Sbjct: 227 EVYPVTLH 234
>gnl|CDD|131719 TIGR02671, cas_csx9, CRISPR-associated protein Cas8a2/Csx9, subtype
I-A/APERN. Members of this family, so far, are archaeal
proteins found in CRISPR-associated (cas) gene regions.
So far, this rare cas protein is found in only three
genomes: Pyrococcus horikoshii shinkaj OT3, Pyrococcus
abyssi GE5, and Thermococcus kodakarensis KOD1. In each
case it is found immediately upstream of cas3 in loci
that resemble the Apern type but lack Csa1 and Csa4
genes [Mobile and extrachromosomal element functions,
Other].
Length = 377
Score = 28.7 bits (64), Expect = 9.6
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 450 LLKEPLLEKFSPQ--PSILMKGLVACTGNQFCGQAIIETKAR-----ALKVTKEVERLVD 502
L+ +P +E F P I+ G++ T G+ ++T+ A+K+ +E ++++
Sbjct: 167 LMTKPGIEVFWPYEVEEIIEDGILPLTDAGASGRISLDTEELYEMKLAMKLAEEGRKVIE 226
Query: 503 VTKPVRMH 510
PV +H
Sbjct: 227 EVYPVTLH 234
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.410
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,452,608
Number of extensions: 3183778
Number of successful extensions: 3326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3261
Number of HSP's successfully gapped: 60
Length of query: 595
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 493
Effective length of database: 6,413,494
Effective search space: 3161852542
Effective search space used: 3161852542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.0 bits)