RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 047572
         (595 letters)



>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein,
           oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB:
           3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A*
           3b0j_A* 3b0l_A* 3b0h_A*
          Length = 591

 Score =  745 bits (1926), Expect = 0.0
 Identities = 473/573 (82%), Positives = 520/573 (90%)

Query: 23  ATSASPKTWRVHATTPAVAPVTTTSAPEVDAERLEPRVEERDGYFVLKEKFRKGINPQEK 82
                 K       TP       T APEV AERLEPRVEE+DGY++LKE+FRKGINPQEK
Sbjct: 19  GRHMFSKNAVKLHATPPSVAAPPTGAPEVAAERLEPRVEEKDGYWILKEQFRKGINPQEK 78

Query: 83  VKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGLFHRRKHHYGRFMMR 142
           VKIEKEPMKLFMENGIE+LAK+ +EEIDQ+K TKDDIDVRLKWLGLFHRRK+ YGRFMMR
Sbjct: 79  VKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMR 138

Query: 143 LKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLT 202
           LKLPNGVTTS QTRYLASVI+KYGK+GCAD+TTRQNWQIRGVVLPDVPEILKGLA+VGLT
Sbjct: 139 LKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLT 198

Query: 203 SLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCV 262
           SLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLS FIT N++GNP V+NLPRKWN CV
Sbjct: 199 SLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCV 258

Query: 263 VGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVC 322
           VGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFS KRC EAIPLDAWV ADDV+PVC
Sbjct: 259 VGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVC 318

Query: 323 KAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWD 382
           +A+LEA+RDLGFRGNRQK RMMWLIDELG+EGFRAEV KRMP Q+L+R S EDLVQ+QW+
Sbjct: 319 RAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWE 378

Query: 383 RRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNV 442
           RRDYLGV+PQKQEG+S++GLHIPVGRVQADDMDELARLAD YGSGE+RLTVEQNIIIPN+
Sbjct: 379 RRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNI 438

Query: 443 DNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVD 502
           + SK+EALLKEP+L  FSP P ILMKGLVACTGNQFCGQAIIETKAR+LK+T+EV+R V 
Sbjct: 439 ETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVS 498

Query: 503 VTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIY 562
           +TKPVRMHWTGCPN+CAQVQVADIGFMGC+TRD++GKT EGADVFLGGRIGSDSHLG++Y
Sbjct: 499 LTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVY 558

Query: 563 KKGVPCKDLVPLVADILVEHFGAVLREREEAED 595
           KK VPC DLVPLV D+LV +FGAV REREE ED
Sbjct: 559 KKAVPCDDLVPLVVDLLVNNFGAVPREREETED 591


>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography,
           heme, electron transport, oxidoreductase; HET: SRM;
           2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1
           d.134.1.1 d.134.1.1
          Length = 608

 Score =  734 bits (1898), Expect = 0.0
 Identities = 461/587 (78%), Positives = 523/587 (89%), Gaps = 2/587 (0%)

Query: 9   SVRFASPLLPSPAAATSASPKTWRVHATTPAVAPVTTTSAPEVDAERLEPRVEERDGYFV 68
           + +F    + SP    +             + A  T   +P VDA RLEPRVEERDG++V
Sbjct: 23  AAKFERQHMDSPDLG-TDDDDKAMGCQKAVSPAAETAAVSPSVDAARLEPRVEERDGFWV 81

Query: 69  LKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRLKWLGL 128
           LKE+FR GINP EKVKIEK+PMKLF+E+GI DLA LSMEE+D++K+ KDDIDVRLKWLGL
Sbjct: 82  LKEEFRSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDKSKHNKDDIDVRLKWLGL 141

Query: 129 FHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPD 188
           FHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPD
Sbjct: 142 FHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPD 201

Query: 189 VPEILKGLAQVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGN 248
           VPEI+KGL  VGLTSLQSGMDNVRNPVGNPLAGIDP EIVDTRP+TNL+S F+TAN++GN
Sbjct: 202 VPEIIKGLESVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGN 261

Query: 249 PTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIP 308
            ++TNLPRKWN CV+GSHDLYEHPHINDLAYMPATK+G+FGFNLLVGGFFS KRC EAIP
Sbjct: 262 LSITNLPRKWNPCVIGSHDLYEHPHINDLAYMPATKNGKFGFNLLVGGFFSIKRCEEAIP 321

Query: 309 LDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQEL 368
           LDAWV+A+DV+PVCKA+LEA+RDLGFRGNRQK RMMWLIDELG+E FR EV KRMP Q L
Sbjct: 322 LDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRMPEQVL 381

Query: 369 DRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGE 428
           +R SSE+LVQ+ W+RR+YLGV+PQKQ+G S+VGLHIPVGR+QAD+M+ELAR+AD YGSGE
Sbjct: 382 ERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGE 441

Query: 429 LRLTVEQNIIIPNVDNSKLEALLKEPLLE-KFSPQPSILMKGLVACTGNQFCGQAIIETK 487
           LRLTVEQNIIIPNV+NSK+++LL EPLL+ ++SP+P ILMKGLVACTG+QFCGQAIIETK
Sbjct: 442 LRLTVEQNIIIPNVENSKIDSLLNEPLLKERYSPEPPILMKGLVACTGSQFCGQAIIETK 501

Query: 488 ARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVF 547
           ARALKVT+EV+RLV VT+PVRMHWTGCPNSC QVQVADIGFMGCMTRDE+GK CEGADVF
Sbjct: 502 ARALKVTEEVQRLVSVTRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVF 561

Query: 548 LGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVLREREEAE 594
           +GGRIGSDSHLGDIYKK VPCKDLVP+VA+IL+  FGAV REREEAE
Sbjct: 562 VGGRIGSDSHLGDIYKKAVPCKDLVPVVAEILINQFGAVPREREEAE 608


>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite,
           siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in
           europe; HET: SRM; 2.80A {Mycobacterium tuberculosis}
           SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB:
           1zj9_A*
          Length = 566

 Score =  592 bits (1529), Expect = 0.0
 Identities = 163/564 (28%), Positives = 264/564 (46%), Gaps = 46/564 (8%)

Query: 53  AERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQA 112
                P     +G + L    R+ +N  E++K    P+ +  E      AK   + ID  
Sbjct: 12  MATARPAKARNEGQWALGH--REPLNANEELKKAGNPLDVR-ERIENIYAKQGFDSID-- 66

Query: 113 KNTKDDIDVRLKWLGLFHRRKHHY---------------GRFMMRLKLPNGVTTSEQTRY 157
              K D+  R +W GL+ +R+  Y                 FMMR++   G  ++   R 
Sbjct: 67  ---KTDLRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRVRCDGGALSAAALRT 123

Query: 158 LASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSGMDNVRNPVGN 217
           L  +  ++ +   AD++ RQN Q   + + +VPEI + L  VGL + ++  D  R  +G+
Sbjct: 124 LGQISTEFAR-DTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQTTEACGDCPRVVLGS 182

Query: 218 PLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDL 277
           PLAG   +E++D       +         G P   +LPRK+   + G  D+     IND+
Sbjct: 183 PLAGESLDEVLDPTWAIEEIVRRYI----GKPDFADLPRKYKTAISGLQDV--AHEINDV 236

Query: 278 AYMPATK-DGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRG 336
           A++     +   G +L VGG  S      A  + AWV   +V  V  AV   +RD G+R 
Sbjct: 237 AFIGVNHPEHGPGLDLWVGGGLSTNPML-AQRVGAWVPLGEVPEVWAAVTSVFRDYGYRR 295

Query: 337 NRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEG 396
            R K R+ +LI + GI  FR  +      + L  G + + V       D++GV   K  G
Sbjct: 296 LRAKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAPEPV---KHPIDHVGVQRLKN-G 351

Query: 397 FSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLL 456
            + VG+    GRV    +  +A L    GS  +R T  Q ++I ++ ++ L+ L+     
Sbjct: 352 LNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDA 411

Query: 457 EKFSPQPSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVD-----VTKPVRMHW 511
                +PS   + L+AC+G +FC  +  ET+ RA  +  E+ER ++     +  P+ ++ 
Sbjct: 412 LGLQSRPSHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNI 471

Query: 512 TGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGD-IYKKGVPCKD 570
            GCPNSCA++Q+ADIGF G M  D  G + EG  V LGG +G D+  G  + +  V   +
Sbjct: 472 NGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDE 531

Query: 571 LVPLVADILVEHFGAVLREREEAE 594
           L   + D +V +F   ++ R E E
Sbjct: 532 LGDYI-DRVVRNF---VKHRSEGE 551


>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme,
           [4Fe-4S], snirr, six-electron REDU phosphate complex;
           HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1
           d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A*
           3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A*
           7gep_A* 8gep_A*
          Length = 497

 Score =  502 bits (1296), Expect = e-174
 Identities = 114/493 (23%), Positives = 201/493 (40%), Gaps = 53/493 (10%)

Query: 133 KHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEI 192
             H    ++R +LP GV T++Q + +     +    G   +T RQ +Q  G++  +V  +
Sbjct: 3   PRHA--MLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPV 60

Query: 193 LKGLAQVGLTSLQSGMDNVRNPV--GNPLAGIDPEEIVD------------TRPYTNLL- 237
            + L  VGL +L +  D  RN +   NP       E  +            TR Y  +  
Sbjct: 61  HQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWL 120

Query: 238 --SHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGR-FGFNLLV 294
                 T + +     T LPRK+   VV         H ND+ ++   ++G+  GFNLLV
Sbjct: 121 DQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLV 180

Query: 295 GGFFS-----PKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDE 349
           GG  S      K  A       ++  +  + V +AV+   RD G R +R+  +  + ++ 
Sbjct: 181 GGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLER 240

Query: 350 LGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRV 409
           +G+E F+AEV +R  G + +     +       R D +G          ++ L I  GR+
Sbjct: 241 VGVETFKAEVERRA-GIKFEPIRPYEF----TGRGDRIGWVKGID-DNWHLTLFIENGRI 294

Query: 410 QADDMDE----LARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSI 465
                      L  +A     G+ R+T  QN+II  V  S+   + K           + 
Sbjct: 295 LDYPARPLKTGLLEIAK-IHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTP 353

Query: 466 LMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVD----VTKPVRMHWTGCPNSCAQV 521
             +  +AC     C  A+ E +         ++ L+       + + M  TGCPN C + 
Sbjct: 354 QRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRA 413

Query: 522 QVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVE 581
            +A++G +        GK     ++ LGG     + +  +YK+ +   +++  + ++   
Sbjct: 414 MLAEVGLV--------GKAPGRYNLHLGGN-RIGTRIPRMYKENITEPEILASLDEL--- 461

Query: 582 HFGAVLREREEAE 594
             G   +ERE  E
Sbjct: 462 -IGRWAKEREAGE 473


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 71.2 bits (174), Expect = 6e-13
 Identities = 95/609 (15%), Positives = 181/609 (29%), Gaps = 200/609 (32%)

Query: 66  YF---VLKEKFRKGI-NPQEKVKIEKEPMKLFMENGIEDLAK-LS--MEEIDQAKNTKDD 118
           +F    L+E+F K +  P E    + EP         E + K L      ++ +K  + D
Sbjct: 27  FFIASQLQEQFNKILPEPTEGFAADDEP-----TTPAELVGKFLGYVSSLVEPSKVGQFD 81

Query: 119 IDVRLKWLGLFHRRKHHYGRFM-------MRLKLPNGVTTSEQTRYLASVIKKYGKDGCA 171
             V    L  F         ++       +  KL     T+        +IK Y     A
Sbjct: 82  -QVLNLCLTEFENC------YLEGNDIHALAAKLLQENDTTLVKTK--ELIKNYIT---A 129

Query: 172 DVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSL------QSGMDNVRNPVGNPLAGIDPE 225
            +  +     R         + +     G   L      Q          GN     + E
Sbjct: 130 RIMAK-----RPFDKKSNSALFRA-VGEGNAQLVAIFGGQ----------GNTDDYFE-E 172

Query: 226 --EIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEH------------ 271
             ++  T  Y  L+   I  +A+   T++ L R      + +  ++              
Sbjct: 173 LRDLYQT--YHVLVGDLIKFSAE---TLSELIR----TTLDAEKVFTQGLNILEWLENPS 223

Query: 272 --PHINDLAYMPATKDGRFGFNLL-------------VGGFFSPKR----------CAEA 306
             P  + L  +P +        L+             + GF +P             ++ 
Sbjct: 224 NTPDKDYLLSIPIS------CPLIGVIQLAHYVVTAKLLGF-TPGELRSYLKGATGHSQG 276

Query: 307 IPLDAWVA-ADDVIPVCKAVLEAYRDL---GFRGNRQKTRMMWLIDELGIEGFRAEVVKR 362
           +     +A  D       +V +A   L   G R    +                  +++ 
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC--YEAY--------PNTSLPPSILE- 325

Query: 363 MPGQELD------------RGSSEDLVQRQWDR-RDYLGVYPQKQEGFSYVGLHIPVGRV 409
                L+               +++ VQ   ++   +L   P  +         + +  V
Sbjct: 326 ---DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL---PAGK--------QVEISLV 371

Query: 410 QADDMDELARLADA-YGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQ------ 462
                  ++    + YG   L LT+ +      +D S++    ++    KFS +      
Sbjct: 372 NGAKNLVVSGPPQSLYG---LNLTLRKAKAPSGLDQSRIPFSERKL---KFSNRFLPVAS 425

Query: 463 P--SILMKGLVACTGNQFCGQAIIETKARALKV----TKE-----------VERLVD--V 503
           P  S L+               +    A+ +++    T +            ER+VD  +
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNV-SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484

Query: 504 TKPVRMHWTGCPNSCAQVQVADIG-----FMGCMT-RDEDGKTCEGADVFLGGRI--GSD 555
             PV   W       A   + D G      +G +T R++DG    G  V + G +    D
Sbjct: 485 RLPV--KWETTTQFKAT-HILDFGPGGASGLGVLTHRNKDGT---GVRVIVAGTLDINPD 538

Query: 556 SHLGDIYKK 564
              G  +K+
Sbjct: 539 DDYG--FKQ 545



 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 53/338 (15%), Positives = 83/338 (24%), Gaps = 147/338 (43%)

Query: 21  AAATSASPKTW-------------------RVHATTP--AVAPVTTTSAPE--------- 50
            A   A   +W                   R +   P  ++ P     + E         
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338

Query: 51  -----VDAERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENG-------- 97
                +  E+++  V           K    +   ++V+I      L   NG        
Sbjct: 339 LSISNLTQEQVQDYV----------NKTNSHLPAGKQVEI-----SLV--NGAKNLVVSG 381

Query: 98  -IEDLAKLSME--------EIDQAKNTKDDIDVRLKWLGLFHRRKHHYG-RFMMRLKLPN 147
             + L  L++          +DQ++     I         F  RK  +  RF     LP 
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSR-----I--------PFSERKLKFSNRF-----LP- 422

Query: 148 GVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSG 207
            V +   +  L        KD       + N                         +Q  
Sbjct: 423 -VASPFHSHLLVPASDLINKD-----LVKNNVSFNA------------------KDIQI- 457

Query: 208 MDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHD 267
                 PV +   G       D R  +  +S  I         +  LP KW         
Sbjct: 458 ------PVYDTFDG------SDLRVLSGSISERIV------DCIIRLPVKWETTTQFK-- 497

Query: 268 LYEHPHINDL---------AYMPATKDGRFGFNLLVGG 296
                HI D                KDG  G  ++V G
Sbjct: 498 ---ATHILDFGPGGASGLGVLTHRNKDGT-GVRVIVAG 531



 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 43/294 (14%), Positives = 82/294 (27%), Gaps = 98/294 (33%)

Query: 363  MPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLAD 422
            M G +L   +S    Q  W+R D    + +   GFS   L I    V  ++   L     
Sbjct: 1631 M-GMDL-YKTS-KAAQDVWNRAD---NHFKDTYGFSI--LDI----VI-NNPVNLTIHFG 1677

Query: 423  AYGSGELR-----LTVEQNI--------IIPNVDNSKLEALLKEP--LLEK--FSPQPSI 465
                  +R     +  E  +        I   ++        +    LL    F+ QP++
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-QPAL 1736

Query: 466  L---------MK------------G--------LVACTGNQFCGQAI-IET-----KARA 490
                      +K            G        L +          + IE+       R 
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD------VMSIESLVEVVFYRG 1790

Query: 491  LKVTKEVER---------LVDVTKPVRMHWTGCPNSCAQVQVADIGFMGCMTRDEDGKTC 541
            + +   V R         ++ +  P R+  +    +   V V  +G          G   
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAIN-PGRVAASFSQEALQYV-VERVG-------KRTGWLV 1841

Query: 542  E-------GADVFLGGRIGSDSHLGDIYKK-GVPCKDLVPLVADILVEHFGAVL 587
            E              G + +   + ++     +   D++ L   + +E     L
Sbjct: 1842 EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 79/520 (15%), Positives = 162/520 (31%), Gaps = 181/520 (34%)

Query: 51  VDAERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAK--LSMEE 108
           +D E  E + + +D   V ++ F    + ++                ++D+ K  LS EE
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKD----------------VQDMPKSILSKEE 50

Query: 109 IDQAKNTKDDID--VRLKWLGLFHRRKHHYGRFM----------------MRLKLPNGVT 150
           ID    +KD +   +RL W  L  +++    +F+                   + P+ +T
Sbjct: 51  IDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 151 T--SEQTRYLASVIKKYGKDGCADVTTRQN-WQIRGVVLPDVPE---ILKGLAQVGLTSL 204
               EQ   L +  + + K    +V+  Q   ++R  +L   P    ++ G+   G T +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKY---NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 205 ----------QSGMD------NVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGN 248
                     Q  MD      N++N          PE +++      LL          +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNC-------NSPETVLE--MLQKLLYQIDPNWTSRS 217

Query: 249 PTVTNLPRKWNVCVVGSHDLY-EHPHINDLAYMPATKDGR----FGFN--LLV------- 294
              +N+  + +        L    P+ N L  +   ++ +    F  +  +L+       
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 295 ------------------GGF--------FS----------PKRCAEAIPL--------- 309
                                                    P+      P          
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 310 -------DAW--VAAD---DVIPVCKAVLEA------YRDLG-FRGN----RQKTRMMWL 346
                  D W  V  D    +I     VLE       +  L  F  +         ++W 
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 347 IDELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRDYLGVYPQKQEGFSYVGLHIPV 406
                 +  +++V+  +   +L + S   LV++Q                 S   +++ +
Sbjct: 398 ------DVIKSDVMVVV--NKLHKYS---LVEKQPKESTI-----------SIPSIYLEL 435

Query: 407 GRVQADDMDEL-ARLADAYGSGELRLTVEQN-IIIPNVDN 444
            +V+ ++   L   + D Y    +  T + + +I P +D 
Sbjct: 436 -KVKLENEYALHRSIVDHY---NIPKTFDSDDLIPPYLDQ 471


>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate
           reduction, oxidored sulfite reduction; HET: SRM; 1.76A
           {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
          Length = 386

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 37/166 (22%), Positives = 59/166 (35%), Gaps = 15/166 (9%)

Query: 380 QWDRRDYL--GVYPQKQE-GFSYVGLHIPVGR-VQADDMDELARLADAYGSGELRLTVEQ 435
            WD  + L  G+     + G     +     R +    + E   +A  + +G LR T   
Sbjct: 40  NWDYHEILEPGILVHVAKNGDKVFTVRCGAARLMSTSHIREACEIAKKFCNGHLRFTTRN 99

Query: 436 NIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKG--------LVACTGNQFCGQAIIETK 487
           NI     +   L+AL+ +    KF+        G        +V   G  +C     +  
Sbjct: 100 NIEFMVDNEETLKALVADLKTRKFAAGSFKFPIGGTGASISNIVHTQGWVYCHTPATDAS 159

Query: 488 ARALKVTKEV-ERLVDVTKP--VRMHWTGCPNSCAQVQVADIGFMG 530
                V  E+ E    +  P  VR+    C N C  V  +DIG +G
Sbjct: 160 GPVKAVMDELFEEFTSMRLPAIVRVSLACCINMCGAVHCSDIGLVG 205


>3mm5_B Sulfite reductase, dissimilatory-type subunit BET;
           alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A
           {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B*
           3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
          Length = 366

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 13/127 (10%)

Query: 416 ELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKF---------SPQPSIL 466
           EL  +AD Y  G LR T   N+     D SK++ L+ E + E+          + +    
Sbjct: 69  ELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINE-VQERVGFPCGGTWDAVKGEYG 127

Query: 467 MKGLVACTGNQFCGQAIIETKARALKVTKEV-ERLVDVTKP--VRMHWTGCPNSCAQVQV 523
           +  +V   G   C    I+       V  E+ E   D   P   R+    C N C  V  
Sbjct: 128 LSNIVHTQGWIHCHTPAIDASGIVKAVMDELYEYFTDHKLPAMCRISLACCANMCGAVHA 187

Query: 524 ADIGFMG 530
           +DI  +G
Sbjct: 188 SDIAIVG 194


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.4 bits (75), Expect = 0.089
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 14/40 (35%)

Query: 434 EQNIIIPNVDNSKLEALLKEPLLEKFSPQ--PSILMKGLV 471
           +Q +        KL+A LK      ++    P++ +K  +
Sbjct: 19  KQAL-------KKLQASLK-----LYADDSAPALAIKATM 46



 Score = 31.1 bits (69), Expect = 0.53
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 81  EKVKIEK--EPMKLFMENGIEDLA-KLSME 107
           EK  ++K    +KL+ ++    LA K +ME
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIKATME 47


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 31.3 bits (70), Expect = 0.52
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 15/86 (17%)

Query: 41  APVTTTSAPEVD---AERLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENG 97
                T  PE      E    R++E D       K  +    QE  +  K+ ++ + +  
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDA----ASKVME----QEWREKAKKDLEEWNQRQ 127

Query: 98  IEDLAK--LSMEEIDQA--KNTKDDI 119
            E + K  ++    D+A  +    DI
Sbjct: 128 SEQVEKNKINNRIADKAFYQQPDADI 153


>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
           alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
           {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
           2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
          Length = 485

 Score = 31.8 bits (72), Expect = 0.62
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 343 MMWLIDELGIEGFRAEVVKRMPG-------QELDRGSSEDL--VQRQWD-RRDYLGVYPQ 392
            +W  + LG++GFR + VK +           +   + +++  V   W      +  Y Q
Sbjct: 221 GVWYTNTLGLDGFRIDAVKHIKYSFTRDWINHVRSATGKNMFAVAEFWKNDLGAIENYLQ 280

Query: 393 KQEGFSYVGLHIPVGR--VQADDMDELARLADAYG 425
           K      V   +P+      A        + + + 
Sbjct: 281 KTNWNHSV-FDVPLHYNLYNASKSGGNYDMRNIFN 314


>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
           chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
          Length = 123

 Score = 29.1 bits (66), Expect = 1.8
 Identities = 6/52 (11%), Positives = 11/52 (21%), Gaps = 13/52 (25%)

Query: 116 KDDIDVRLKWLGL-------------FHRRKHHYGRFMMRLKLPNGVTTSEQ 154
           K+ I  R+                                ++LP  V    +
Sbjct: 47  KEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAE 98


>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
           halophilic, N domain, starch binding, hydrolase; HET:
           G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
           3bcd_A* 3bcf_A
          Length = 599

 Score = 30.3 bits (68), Expect = 2.1
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 343 MMWLIDELGIEGFRAEVVKRMPG 365
             W+I+ +  +GFR + VK +  
Sbjct: 335 GQWIINNIDFDGFRLDAVKHIDY 357


>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A
           {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A
           1ud6_A 1ud8_A 1ud3_A
          Length = 480

 Score = 30.2 bits (68), Expect = 2.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 343 MMWLIDELGIEGFRAEVVKRMPGQEL 368
             W  DEL ++G+R + +K +P    
Sbjct: 216 GSWFTDELDLDGYRLDAIKHIPFWYT 241


>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
          consortium, transferase; HET: EPE; 2.18A {Plasmodium
          falciparum}
          Length = 218

 Score = 29.4 bits (67), Expect = 2.4
 Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 3/25 (12%)

Query: 57 EPRVEERDG---YFVLKEKFRKGIN 78
          + R +E++G   YF+ K  F   + 
Sbjct: 61 KKREKEKEGVDYYFIDKTIFEDKLK 85


>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
           2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
           c.1.8.1
          Length = 515

 Score = 29.8 bits (67), Expect = 2.6
 Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 7/41 (17%)

Query: 343 MMWLIDELGIEGFRAEVVKRMPG-------QELDRGSSEDL 376
             W ++   I+GFR + VK +           +   + + L
Sbjct: 219 GKWYVNTTNIDGFRLDAVKHIKFSFFPDWLSYVRSQTGKPL 259


>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
          structural genomics, structural genomics of pathogenic
          protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
          vivax}
          Length = 204

 Score = 29.4 bits (67), Expect = 2.7
 Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 57 EPRVEERDG---YFVLKEKFRKGINPQE 81
            R +E +G   YFV K+ F + +   +
Sbjct: 50 NKREKETNGVDYYFVDKDDFERKLKEGQ 77


>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
           hydrolase, metal-binding, secreted; 1.40A {Bacillus
           amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
           1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
          Length = 483

 Score = 29.8 bits (67), Expect = 2.9
 Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 7/41 (17%)

Query: 343 MMWLIDELGIEGFRAEVVKRMPG-------QELDRGSSEDL 376
            +W  +EL ++GFR +  K +         Q + + + +++
Sbjct: 216 GIWYANELSLDGFRIDAAKHIKFSFLRDWVQAVRQATGKEM 256


>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II,
           amidohydrolase, sargasso SEA, enviro sample, structural
           genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9
          Length = 492

 Score = 29.6 bits (67), Expect = 3.1
 Identities = 14/102 (13%), Positives = 22/102 (21%), Gaps = 11/102 (10%)

Query: 324 AVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDR 383
            + E    LG R      R                +        +     E L  R  D 
Sbjct: 152 ILFEEAEKLGLRFV--LLRGGATQTRQLEADLPTALRPETLDAYVAD--IERLAARYHDA 207

Query: 384 RDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYG 425
                           +     +  +   +M E A +A   G
Sbjct: 208 SPRAMRRVV-------MAPTTVLYSISPREMRETAAVARRLG 242


>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding
          protein, SMOM; trap transporter, periplasmic subunit,
          ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB:
          2hzk_A
          Length = 365

 Score = 29.3 bits (66), Expect = 3.3
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 13 ASPLLPSPAAATSASPKTWRVHATTPAVAPVTTTSAPEVDAERLE 57
          A+  L +PA A SA   TWR+ ++ P         A  + ++ L 
Sbjct: 16 AASALAAPALAQSAPKVTWRLASSFPKSLDTIFGGAEVL-SKMLS 59


>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
           resolution, stress response, chaperone; 1.64A
           {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
          Length = 100

 Score = 27.8 bits (63), Expect = 3.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 129 FHRRKHHYGRFMMRLKLPNGV 149
           F R +  YG F  R  LP+  
Sbjct: 56  FSRIERRYGSFHRRFALPDSA 76


>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease,
            double strand DNA repair, protein-DNA CO hydrolase-DNA
            complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
          Length = 1166

 Score = 29.7 bits (66), Expect = 3.7
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 66   YFVLKEKFRKGINPQEKVKIEKEPMKLFMENGI--EDLAKLSMEEIDQAKNTKDDIDVRL 123
            YF + +   +   P    +IE+E  K F   G+   D   + + +    +   + I+  L
Sbjct: 1008 YFHIHDPMIQSNLPLGLDEIEQEIFKKFKMKGLLLGDQEVVRLMDTTLQEGRSNIINAGL 1067

Query: 124  KWLGLFHRR 132
            K  G     
Sbjct: 1068 KKDGSLRSD 1076


>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics,
           center for structural genomics of infec diseases, csgid;
           HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii}
           PDB: 3roi_A* 4egr_A* 3tr1_A
          Length = 441

 Score = 29.1 bits (66), Expect = 4.2
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 322 CKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSS 373
             A++ A + +G      +   + +++ +G+ G +A      P + LD G+S
Sbjct: 52  NLAMVSALQQMGASIQVIEDENILVVEGVGMTGLQA------PPEALDCGNS 97


>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
          acetylation, ATP-binding, nucleotide-binding,
          phosphoprotein, transferase; 1.80A {Saccharomyces
          cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
          2zzy_A
          Length = 186

 Score = 28.2 bits (64), Expect = 4.8
 Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 3/25 (12%)

Query: 57 EPRVEERDG---YFVLKEKFRKGIN 78
           PR  E +G    FV  ++F+  I 
Sbjct: 39 TPRAGEVNGKDYNFVSVDEFKSMIK 63


>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase,
           transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
          Length = 147

 Score = 28.2 bits (62), Expect = 5.2
 Identities = 9/49 (18%), Positives = 22/49 (44%)

Query: 71  EKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDI 119
            +        +K+  + E +KL  +  +++  K ++  ID +   +D I
Sbjct: 16  NRLTSRYPFFKKIAFDAEIIKLVDDLNVDENVKCAIVAIDTSMRMQDFI 64


>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
          like domain, protein binding; 1.31A {Homo sapiens}
          SCOP: c.37.1.1
          Length = 180

 Score = 28.2 bits (64), Expect = 5.5
 Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 3/23 (13%)

Query: 58 PRVEERDG---YFVLKEKFRKGI 77
          P+ +E +G   YFV  ++  + I
Sbjct: 44 PKKDEENGKNYYFVSHDQMMQDI 66


>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET,
           lysine, alternative splicing, cell cycle, cell division,
           chromatin regulator, chromosomal protein, coiled coil;
           HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A*
           3f9z_A* 1zkk_A* 2bqz_A*
          Length = 166

 Score = 28.1 bits (63), Expect = 5.8
 Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 6/40 (15%)

Query: 222 IDPEEIVDTRPYTNLLSHFITANAQGNPTVTNL-PRKWNV 260
           +     VD    TN L   I  N        N   +  ++
Sbjct: 92  LSKTYCVDATRETNRLGRLI--NHSKCG---NCQTKLHDI 126


>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured
           murine large bowel bacteriuorganism_taxid}
          Length = 234

 Score = 28.2 bits (63), Expect = 6.0
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 131 RRKHHYGRFMMRLKLPNG 148
           R K  YG + +R+K    
Sbjct: 87  RDKFGYGLYQVRMKPAKN 104


>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
           alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
           b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
          Length = 151

 Score = 27.7 bits (62), Expect = 6.0
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 129 FHRRKHHYGRFMMRLKLPNGVTTSE 153
           +HR +   G+F+ R +L       E
Sbjct: 96  WHRVERSSGKFVRRFRLLEDAKVEE 120


>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta
           sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1
           c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A*
           1qi4_A* 2amg_A 1qpk_A*
          Length = 527

 Score = 28.1 bits (62), Expect = 9.4
 Identities = 6/27 (22%), Positives = 11/27 (40%)

Query: 340 KTRMMWLIDELGIEGFRAEVVKRMPGQ 366
           +     L  + G  GFR + V+    +
Sbjct: 175 RDEFTNLRSQYGAGGFRFDFVRGYAPE 201


>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
          nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
          burnetii}
          Length = 205

 Score = 27.5 bits (62), Expect = 9.9
 Identities = 4/25 (16%), Positives = 13/25 (52%), Gaps = 3/25 (12%)

Query: 57 EPRVEERDG---YFVLKEKFRKGIN 78
            R  +++G   +F+ + +F+  + 
Sbjct: 44 PKRPGDQEGVDYFFIDETRFQAMVK 68


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,677,678
Number of extensions: 626458
Number of successful extensions: 1653
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1602
Number of HSP's successfully gapped: 49
Length of query: 595
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 496
Effective length of database: 3,937,614
Effective search space: 1953056544
Effective search space used: 1953056544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)