RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 047572
(595 letters)
>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 153
Score = 199 bits (507), Expect = 7e-62
Identities = 135/153 (88%), Positives = 146/153 (95%)
Query: 55 RLEPRVEERDGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKN 114
RLEPRVEERDG++VLKE+FR GINP EKVKIEK+PMKLF+E+GI DLA LSMEE+D++K+
Sbjct: 1 RLEPRVEERDGFWVLKEEFRSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDKSKH 60
Query: 115 TKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVT 174
KDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVT
Sbjct: 61 NKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVT 120
Query: 175 TRQNWQIRGVVLPDVPEILKGLAQVGLTSLQSG 207
TRQNWQIRGVVLPDVPEI+KGL VGLTSLQSG
Sbjct: 121 TRQNWQIRGVVLPDVPEIIKGLESVGLTSLQSG 153
Score = 64.1 bits (156), Expect = 7e-13
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 362 RMPGQELDRGSS--EDLVQRQWDRRDYLGVYPQK--QEGFSYVGLHIPVGRVQADDMDEL 417
+ +E+D+ +D+ R +LG++ ++ G + L +P G ++ L
Sbjct: 49 TLSMEEVDKSKHNKDDIDVR----LKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYL 104
Query: 418 ARLADAYGS-GELRLTVEQNIIIPNVDNSKLEALLKE 453
A + YG G +T QN I V + ++K
Sbjct: 105 ASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKG 141
>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 171
Score = 189 bits (482), Expect = 6e-58
Identities = 140/171 (81%), Positives = 158/171 (92%)
Query: 208 MDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHD 267
MDNVRNPVGNPLAGIDP EIVDTRP+TNL+S F+TAN++GN ++TNLPRKWN CV+GSHD
Sbjct: 1 MDNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHD 60
Query: 268 LYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLE 327
LYEHPHINDLAYMPATK+G+FGFNLLVGGFFS KRC EAIPLDAWV+A+DV+PVCKA+LE
Sbjct: 61 LYEHPHINDLAYMPATKNGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLE 120
Query: 328 AYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQ 378
A+RDLGFRGNRQK RMMWLIDELG+E FR EV KRMP Q L+R SSE+LVQ
Sbjct: 121 AFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRMPEQVLERASSEELVQ 171
Score = 40.0 bits (93), Expect = 3e-04
Identities = 15/120 (12%), Positives = 35/120 (29%), Gaps = 12/120 (10%)
Query: 471 VACTGNQFCGQAIIETKARALKVTKEVER-------LVDVTKPVRMHWTGCPNSCAQVQV 523
V I++T+ +++ V + ++ + G + +
Sbjct: 8 VGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDLYEHPHI 67
Query: 524 ADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHF 583
D+ +M G ++ +GG I + V V ++E F
Sbjct: 68 NDLAYMP-----ATKNGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEAF 122
>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 142 bits (359), Expect = 2e-40
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 8/171 (4%)
Query: 209 DNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDL 268
D R +G+PLAG +E++D + G P +LPRK+ + G D+
Sbjct: 2 DCPRVVLGSPLAGESLDEVLDPTWAIEEIVRRYI----GKPDFADLPRKYKTAISGLQDV 57
Query: 269 YEHPHINDLAYMPATKDGR-FGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLE 327
IND+A++ G +L VGG S A + AWV +V V AV
Sbjct: 58 --AHEINDVAFIGVNHPEHGPGLDLWVGGGLS-TNPMLAQRVGAWVPLGEVPEVWAAVTS 114
Query: 328 AYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQ 378
+RD G+R R K R+ +LI + GI FR + + L G + + V+
Sbjct: 115 VFRDYGYRRLRAKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAPEPVK 165
>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 126
Score = 132 bits (333), Expect = 3e-37
Identities = 109/126 (86%), Positives = 118/126 (93%)
Query: 463 PSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVTKPVRMHWTGCPNSCAQVQ 522
P ILMKGLVACTG+QFCGQAIIETKARALKVT+EV+RLV VT+PVRMHWTGCPNSC QVQ
Sbjct: 1 PPILMKGLVACTGSQFCGQAIIETKARALKVTEEVQRLVSVTRPVRMHWTGCPNSCGQVQ 60
Query: 523 VADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEH 582
VADIGFMGCMTRDE+GK CEGADVF+GGRIGSDSHLGDIYKK VPCKDLVP+VA+IL+
Sbjct: 61 VADIGFMGCMTRDENGKPCEGADVFVGGRIGSDSHLGDIYKKAVPCKDLVPVVAEILINQ 120
Query: 583 FGAVLR 588
FGAV R
Sbjct: 121 FGAVPR 126
>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 152
Score = 128 bits (324), Expect = 1e-35
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 64 DGYFVLKEKFRKGINPQEKVKIEKEPMKLFMENGIEDLAKLSMEEIDQAKNTKDDIDVRL 123
+G + L R+ +N E++K P+ + E AK + ID K D+ R
Sbjct: 3 EGQWALGH--REPLNANEELKKAGNPLDVR-ERIENIYAKQGFDSID-----KTDLRGRF 54
Query: 124 KWLGLFHRRKHHY---------------GRFMMRLKLPNGVTTSEQTRYLASVIKKYGKD 168
+W GL+ +R+ Y FMMR++ G ++ R L + ++
Sbjct: 55 RWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRVRCDGGALSAAALRTLGQISTEFA-R 113
Query: 169 GCADVTTRQNWQIRGVVLPDVPEILKGLAQVGLTSLQS 206
AD++ RQN Q + + +VPEI + L VGL + ++
Sbjct: 114 DTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQTTEA 151
Score = 59.6 bits (144), Expect = 3e-11
Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 13/111 (11%)
Query: 356 RAEVVKRMPGQELDRGSSEDLVQR-------QWDRRDYLG------VYPQKQEGFSYVGL 402
R + Q D DL R + Y G + + + + +
Sbjct: 30 RERIENIYAKQGFDSIDKTDLRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRV 89
Query: 403 HIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKE 453
G + A + L +++ + ++ QN+ ++ + + +
Sbjct: 90 RCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRR 140
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 85
Score = 119 bits (299), Expect = 6e-33
Identities = 63/85 (74%), Positives = 80/85 (94%), Gaps = 1/85 (1%)
Query: 379 RQWDRRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNII 438
+ W+RR+YLGV+PQKQ+G S+VGLHIPVGR+QAD+M+ELAR+AD YGSGELRLTVEQNII
Sbjct: 1 KDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNII 60
Query: 439 IPNVDNSKLEALLKEPLL-EKFSPQ 462
IPNV+NSK+++LL EPLL E++SP+
Sbjct: 61 IPNVENSKIDSLLNEPLLKERYSPE 85
Score = 74.0 bits (182), Expect = 4e-17
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 122 RLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQI 181
R ++LG+ +++ G + L +P G +++ LA + YG G +T QN I
Sbjct: 5 RREYLGVHPQKQQ--GLSFVGLHIPVGRLQADEMEELARIADVYG-SGELRLTVEQNIII 61
Query: 182 RGVVLPDVPEILK 194
V + +L
Sbjct: 62 PNVENSKIDSLLN 74
>d1aopa3 d.134.1.1 (A:149-345) Sulfite reductase hemoprotein
(SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}
Length = 197
Score = 121 bits (306), Expect = 1e-32
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 27/199 (13%)
Query: 209 DNVRNPVGNPLAGIDPEEIVDTRPYTNLLSHFIT----------------ANAQGNP--T 250
D RN + + + + + +S + A P
Sbjct: 2 DMNRNVLCTS-NPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILG 60
Query: 251 VTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGR-FGFNLLVGGFFS-----PKRCA 304
T LPRK+ VV H ND+ ++ ++G+ GFNLLVGG S K A
Sbjct: 61 QTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYA 120
Query: 305 EAIPLDAWVAADDVIPVCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEGFRAEVVKRMP 364
++ + + V +AV+ RD G R +R+ + + ++ +G+E F+AEV +R
Sbjct: 121 RTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRA- 179
Query: 365 GQELDRGSSEDLVQRQWDR 383
G + + + R DR
Sbjct: 180 GIKFEPIRPYEFTGRG-DR 197
Score = 33.4 bits (76), Expect = 0.038
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Query: 512 TGCPNSCAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDL 571
P + + D+ F+ + G ++ +GG + + Y + +
Sbjct: 73 VIPPQNDIDLHANDMNFVAI----AENGKLVGFNLLVGGGLSIEHGNKKTYARTA--SEF 126
Query: 572 VPLVADILVEHFGAVLR 588
L + + AV+
Sbjct: 127 GYLPLEHTLAVAEAVVT 143
>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 149
Score = 97.2 bits (241), Expect = 2e-24
Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 8/137 (5%)
Query: 463 PSILMKGLVACTGNQFCGQAIIETKARALKVTKEVERLVD-----VTKPVRMHWTGCPNS 517
PS + L+AC+G +FC + ET+ RA + E+ER ++ + P+ ++ GCPNS
Sbjct: 1 PSHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNS 60
Query: 518 CAQVQVADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVAD 577
CA++Q+ADIGF G M D G + EG V LGG +G D+ G ++ D + D
Sbjct: 61 CARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYID 120
Query: 578 ILVEHFGAVLREREEAE 594
+V +F ++ R E E
Sbjct: 121 RVVRNF---VKHRSEGE 134
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3
{Escherichia coli [TaxId: 562]}
Length = 65
Score = 85.9 bits (213), Expect = 2e-21
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 140 MMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQV 199
++R +LP GV T++Q + + + G +T RQ +Q G++ +V + + L V
Sbjct: 1 LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSV 60
Query: 200 GLTSL 204
GL +L
Sbjct: 61 GLDAL 65
Score = 49.3 bits (118), Expect = 2e-08
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 402 LHIPVGRVQADDMDELARLADAYGS-GELRLTVEQNIIIPNVDNSKLEALLKE 453
+P G + + + A G +RLT Q + ++ + +
Sbjct: 4 CRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQM 56
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 80
Score = 84.0 bits (208), Expect = 1e-20
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 383 RRDYLGVYPQKQEGFSYVGLHIPVGRVQADDMDELARLADAYGSGELRLTVEQNIIIPNV 442
D++GV K G + VG+ GRV + +A L GS +R T Q ++I ++
Sbjct: 2 PIDHVGVQRLKN-GLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDI 60
Query: 443 DNSKLEALLKE 453
++ L+ L+
Sbjct: 61 PDALLDDLIAG 71
Score = 75.2 bits (185), Expect = 2e-17
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 130 HRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDV 189
R K+ G + + G + +A ++ + G T Q I + +
Sbjct: 9 QRLKN--GLNAVGVAPIAGRVSGTILTAVADLMARAG-SDRIRFTPYQKLVILDIPDALL 65
Query: 190 PEILKGLAQVGLTS 203
+++ GL +GL S
Sbjct: 66 DDLIAGLDALGLQS 79
>d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein
(SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}
Length = 145
Score = 83.1 bits (205), Expect = 2e-19
Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 17/132 (12%)
Query: 468 KGLVACTGNQFCGQAIIETKARALKVTKEVERLVD----VTKPVRMHWTGCPNSCAQVQV 523
+ +AC C A+ E + ++ L+ + + M TGCPN C + +
Sbjct: 4 ENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAML 63
Query: 524 ADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHF 583
A++G +G G G + + +YK+ + +++ + +++
Sbjct: 64 AEVGLVGKA---------PGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELI---- 110
Query: 584 GAVLREREEAED 595
G +ERE E
Sbjct: 111 GRWAKEREAGEG 122
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 71.7 bits (176), Expect = 2e-16
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 387 LGVYPQKQEGFSYVGLHIPVGRVQADD----MDELARLADAYGSGELRLTVEQNIIIPNV 442
+G + ++ L I GR+ L +A + G+ R+T QN+II V
Sbjct: 1 IGWVKGI-DDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK-GDFRITANQNLIIAGV 58
Query: 443 DNSKLEALLKEPLLEKF 459
S+ + E + ++
Sbjct: 59 PESEKAKI--EKIAKES 73
Score = 51.6 bits (124), Expect = 3e-09
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 132 RKHHYGRFMMRLKLPNGVTT----SEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLP 187
K + + L + NG L + K + G +T QN I GV
Sbjct: 4 VKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK--GDFRITANQNLIIAGVPES 61
Query: 188 DVPEILKGLAQVGLTS 203
+ +I K + GL +
Sbjct: 62 EKAKIEKIAKESGLMN 77
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit
beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Length = 134
Score = 50.4 bits (121), Expect = 3e-08
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 380 QWDRRDYL--GVYPQKQE-GFSYVGLHIPVGR-VQADDMDELARLADAYGSGELRLTVEQ 435
W + L GV E G + + R + + E+ +AD Y G LR T
Sbjct: 39 SWLYHEILEPGVLMHVAESGDKVYTVRVGAARLMSITHIREMCDIADKYCGGHLRFTTRN 98
Query: 436 NIIIPNVDNSKLEALLKEPLLEKF 459
N+ D + L+AL ++ KF
Sbjct: 99 NVEFMVADEASLKALKEDLASRKF 122
Score = 46.5 bits (111), Expect = 8e-07
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 7/78 (8%)
Query: 139 FMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQ 198
+ +R+ + + R + + KY G TTR N + + + + LA
Sbjct: 62 YTVRVGAA-RLMSITHIREMCDIADKYC-GGHLRFTTRNNVEFMVADEASLKALKEDLAS 119
Query: 199 VGLTSLQSGMDNVRNPVG 216
P+G
Sbjct: 120 RKFDGGSLKF-----PIG 132
>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite
reductase subunit beta, DsrB {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 177
Score = 48.1 bits (114), Expect = 5e-07
Identities = 22/124 (17%), Positives = 34/124 (27%), Gaps = 3/124 (2%)
Query: 471 VACTGNQFCGQAIIETKARALKVTKEVERLVDVTK---PVRMHWTGCPNSCAQVQVADIG 527
V G C + + EV + PVR+ C N C V +DIG
Sbjct: 8 VHTQGWVHCHTPATDASGPVKAIMDEVFEDFQSMRLPAPVRISLACCINMCGAVHCSDIG 67
Query: 528 FMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVL 587
+G D G + P + ++E + A
Sbjct: 68 VVGIHRGDGVVIMVGGKVSNRISMPKFSKVVVAYIPNEPPRWPSLTKTIKHIIEVYSANA 127
Query: 588 RERE 591
+ E
Sbjct: 128 YKYE 131
>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite
reductase subunit beta, DsrB {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 179
Score = 45.0 bits (106), Expect = 5e-06
Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 12/125 (9%)
Query: 471 VACTGNQFCGQAIIETKARALKVTKEVERL---VDVTKPVRMHWTGCPNSCAQVQVADIG 527
V G C I+ V E+ + R+ C N C V +DI
Sbjct: 10 VHTQGWIHCHTPAIDASGIVKAVMDELYEYFTDHKLPAMCRISLACCANMCGAVHASDIA 69
Query: 528 FMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADILVEHFGAVL 587
+G GA + +GG++ + ++ K VP P LV++ +L
Sbjct: 70 IVGIHD---------GAAIMVGGKLSEARRMPELSKVVVPWVPNEPPRWPTLVKYVKQIL 120
Query: 588 REREE 592
Sbjct: 121 EAWAA 125
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite
reductase subunit alpha, DsrA {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 185
Score = 42.0 bits (98), Expect = 6e-05
Identities = 15/111 (13%), Positives = 27/111 (24%), Gaps = 5/111 (4%)
Query: 472 ACTGNQFCGQAIIETKARALKVTKEVERL---VDVTKPVRMHWTGCPNSCAQVQVADIGF 528
AC G C A +T +T + ++ GCPN C +
Sbjct: 8 ACMGPALCEFACYDTLELCYDLTMTYQDELHRPMWPYKFKIKCAGCPNDCVASKA--RSD 65
Query: 529 MGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADIL 579
+ G + P ++ ++ I
Sbjct: 66 FAIIGTWRGATILIGGKAPFVEGAVIGWVAVPFVEVEKPYDEIKEILEAIW 116
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit
beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 119
Score = 38.8 bits (91), Expect = 2e-04
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 416 ELARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKF 459
EL +AD Y G LR T N+ D SK++ L+ E + E+
Sbjct: 66 ELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINE-VQERV 108
Score = 33.0 bits (76), Expect = 0.028
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 151 TSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLAQVG 200
+ R L + KY DG T+R N + + +++ + +
Sbjct: 60 SIYTVRELCDIADKYS-DGYLRWTSRNNVEFFVTDESKIDDLINEVQERV 108
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite
reductase subunit alpha, DsrA {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 189
Score = 31.1 bits (70), Expect = 0.24
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 6/117 (5%)
Query: 467 MKGLVACTGNQFCGQAIIETKARALKVTKEVERLVDVT---KPVRMHWTGCPN-SCAQVQ 522
++ +C G C A +++A ++T E + + + + CPN A +
Sbjct: 4 LRTPESCLGKSRCEFACYDSQAACYELTMEYQDELHRPAFPYKFKFKFDACPNGCVASIA 63
Query: 523 VADIGFMGCMTRDEDGKTCEGADVFLGGRIGSDSHLGDIYKKGVPCKDLVPLVADIL 579
+D +G R A + G ++G S L P ++ +V I
Sbjct: 64 RSDFSVIGTWKRGASILCGAKAPILDGAQMG--SLLVPFVAAEEPFDEIKEVVEKIW 118
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter
succinogenes [TaxId: 833]}
Length = 243
Score = 29.3 bits (65), Expect = 1.2
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 131 RRKHHYGRFMMRLKLPNG 148
+ YG+F R+K+
Sbjct: 15 LEEVQYGKFEARMKMAAA 32
>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo
sapiens), 1B [TaxId: 9606]}
Length = 297
Score = 28.6 bits (63), Expect = 2.2
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 140 MMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQ 180
MR + T++Q R+ + + K D + + W+
Sbjct: 251 EMRKFRMGLIQTADQLRFSYLAVIEGAKFIMGDSSVQDQWK 291
>d1lhta_ a.1.1.2 (A:) Myoglobin {Loggerhead sea turtle (Caretta
caretta) [TaxId: 8467]}
Length = 153
Score = 26.6 bits (58), Expect = 6.2
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 310 DAWVAADDVIPVCKAVLEAYRDLGFRG 336
A A ++ + Y++ GF+G
Sbjct: 129 AAMKKALEL--FRNDMASKYKEFGFQG 153
>d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis
[TaxId: 1423]}
Length = 186
Score = 26.6 bits (57), Expect = 6.5
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 333 GFRGNRQKTRMMWLIDELGIEGFRAEVVKRMPGQELDRGSSEDLVQRQWDRRD 385
G+R + WL L +G +A+++ + D +
Sbjct: 9 GYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQPRLEDWLDTLSLYQHTLH 61
>d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier
protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId:
1902]}
Length = 86
Score = 25.3 bits (55), Expect = 7.5
Identities = 3/58 (5%), Positives = 9/58 (15%), Gaps = 5/58 (8%)
Query: 221 GIDPEEIVDTRPYTNLLSHFITANAQGNPTVTNLPRKWNVCVVGSHDLYEHPHINDLA 278
G D + ++ + + +L
Sbjct: 23 GTDLSGDFLDLRFEDIGYDSLALM-----ETAARLESRYGVSIPDDVAGRVDTPRELL 75
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 27.0 bits (59), Expect = 7.7
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 64 DGYFVLKEKFRKGINPQEKVKIEKE-PMKLFMENGIEDLAKLS 105
D + LK K + V ++ P+K +G+ED+++LS
Sbjct: 9 DYHKYLKVKQGDSDLFKLTVSDKRRNPIKF---DGVEDMSELS 48
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing
protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 26.3 bits (57), Expect = 9.5
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 418 ARLADAYGSGELRLTVEQNIIIPNVDNSKLEALLKEPLLEKFSPQPSILMKGLVACTGNQ 477
L + +G L + + +IP V E L+ S L +G+ TG
Sbjct: 17 TLLREDFG---LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGAS 73
Query: 478 FCGQAI 483
+
Sbjct: 74 CIYPLL 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.410
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,335,508
Number of extensions: 115959
Number of successful extensions: 388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 37
Length of query: 595
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 505
Effective length of database: 1,171,896
Effective search space: 591807480
Effective search space used: 591807480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)