Query 047574
Match_columns 163
No_of_seqs 126 out of 442
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 12:23:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 1.8E-45 4E-50 284.1 16.1 145 10-154 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 6.4E-40 1.4E-44 251.2 15.1 140 3-142 1-149 (149)
3 PF01284 MARVEL: Membrane-asso 98.5 6E-06 1.3E-10 61.1 13.1 134 6-148 3-143 (144)
4 PF05702 Herpes_UL49_5: Herpes 36.0 44 0.00096 24.1 2.9 54 107-160 37-90 (98)
5 PF06376 DUF1070: Protein of u 19.3 1.5E+02 0.0032 17.3 2.5 15 83-97 13-27 (34)
6 PF07584 BatA: Aerotolerance r 16.4 1.6E+02 0.0034 19.5 2.6 21 5-25 55-75 (77)
7 PF14147 Spore_YhaL: Sporulati 14.7 2.3E+02 0.005 18.1 2.8 23 49-71 2-24 (52)
8 KOG4016 Synaptic vesicle prote 13.9 7.3E+02 0.016 20.5 13.5 136 6-153 22-169 (233)
9 KOG3088 Secretory carrier memb 12.0 9.6E+02 0.021 20.8 9.6 64 77-154 200-263 (313)
10 COG5515 Uncharacterized conser 11.6 1.3E+02 0.0028 20.0 1.1 10 124-133 16-25 (70)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=1.8e-45 Score=284.15 Aligned_cols=145 Identities=48% Similarity=0.772 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccceeee--eeeeeEecccchHHHHHHHHHHHHHHHHHHHHh------hccc-hHHHH
Q 047574 10 NLLRLIALGATVAAIVVMVTSHQSAEVFN--LTFTAKFSNEPVFKYFVVAEAIACGYTLVVLIL------SSRS-LLWRL 80 (163)
Q Consensus 10 l~LR~~a~~~sl~a~~vM~t~~q~~~~~~--~~~~~~f~~~~af~ylv~an~i~~~Ysllql~~------~~~~-~~~~~ 80 (163)
++||+++++++++|+++|+||+|+.++++ +++++||+|+++|+|+|++|+|+++|+++|++. ++++ ...|+
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~~~~~ 80 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFFKLIA 80 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 47999999999999999999999999988 899999999999999999999999999999987 2222 34799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047574 81 IVILDAVMTAVLTSSISAALAIARVGKKGNSHAGWLPICGQVPKFCDHVTGALVCGFVAAIVYALLLVFSLYSA 154 (163)
Q Consensus 81 ~f~~Dqv~ayLl~saaaAA~~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsf~A~~~~~~~s~lSa~~l 154 (163)
+|.+||+++|+++||++||+++++++|+||+|.+|+|+|+++++||||+++|++++|+|++++++++++|++++
T Consensus 81 ~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~ 154 (154)
T TIGR01569 81 LFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL 154 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=6.4e-40 Score=251.17 Aligned_cols=140 Identities=43% Similarity=0.721 Sum_probs=131.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeeeEecccchHHHHHHHHHHHHHHHHHHHHh------hc---
Q 047574 3 MTKRIITNLLRLIALGATVAAIVVMVTSHQSAEVFNLTFTAKFSNEPVFKYFVVAEAIACGYTLVVLIL------SS--- 73 (163)
Q Consensus 3 ~~~~~~~l~LR~~a~~~sl~a~~vM~t~~q~~~~~~~~~~~~f~~~~af~ylv~an~i~~~Ysllql~~------~~--- 73 (163)
|+.+..+++||+++++++++|+++|++|+|+.++.+++.++||+|+++|+|++++|+|+++|+++|++. ++
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~~~ 80 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGKLR 80 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 467899999999999999999999999999999988899999999999999999999999999999986 11
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcccccCCccchhhhHHHHHHHHHHHHHH
Q 047574 74 RSLLWRLIVILDAVMTAVLTSSISAALAIARVGKKGNSHAGWLPICGQVPKFCDHVTGALVCGFVAAIV 142 (163)
Q Consensus 74 ~~~~~~~~f~~Dqv~ayLl~saaaAA~~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsf~A~~~ 142 (163)
++...|++|++||+++|+++||++||+++++++++||++.+|+++|+.+++||+|+++|++++|+|+++
T Consensus 81 ~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 81 SKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 224688999999999999999999999999999999999999999999999999999999999999874
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.49 E-value=6e-06 Score=61.10 Aligned_cols=134 Identities=18% Similarity=0.167 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeeeEecccchHHHHHHHHHHHHHHHHHHHHh---h--c--cchHH
Q 047574 6 RIITNLLRLIALGATVAAIVVMVTSHQSAEVFNLTFTAKFSNEPVFKYFVVAEAIACGYTLVVLIL---S--S--RSLLW 78 (163)
Q Consensus 6 ~~~~l~LR~~a~~~sl~a~~vM~t~~q~~~~~~~~~~~~f~~~~af~ylv~an~i~~~Ysllql~~---~--~--~~~~~ 78 (163)
|..+.++|+++++++++...+++....+.. .......++..|.+.+.++...+++.-+.. + . +....
T Consensus 3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 76 (144)
T PF01284_consen 3 RSPSGILRILQLVFALIIFGLVASSIATGS------QIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFSLKYRPRIPWP 76 (144)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhccc------cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 446789999999999999999998764221 124566777889999999998888776655 1 1 12335
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcccccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 047574 79 RLIVILDAVMTAVLTSSISAALAIARVGKKGNSHAGWLPICGQVPKFCDHVTGALVCGFVAAIVYALLLV 148 (163)
Q Consensus 79 ~~~f~~Dqv~ayLl~saaaAA~~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsf~A~~~~~~~s~ 148 (163)
+..+..|.+++.+-+.+...-+.-....+.+++ +++.+...++-|+...++.++++++++.+..+.+
T Consensus 77 ~~~~~~~~v~~il~l~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 77 LVEFIFDAVFAILWLAAFIALAAYLSDHSCSNT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCcccccC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999988876555432211112211 2334455567899999999999999999987754
No 4
>PF05702 Herpes_UL49_5: Herpesvirus UL49.5 envelope/tegument protein; InterPro: IPR008647 UL49.5 protein consists of 98 amino acids with a calculated molecular mass of 10,155 Da. It contains putative signal peptide and transmembrane domains but lacks a consensus sequence for N glycosylation. UL49.5 protein is an O-glycosylated structural component of the viral envelope [].
Probab=36.02 E-value=44 Score=24.07 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=40.8
Q ss_pred hcCCCcCCcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccC
Q 047574 107 KKGNSHAGWLPICGQVPKFCDHVTGALVCGFVAAIVYALLLVFSLYSALGPVFG 160 (163)
Q Consensus 107 ~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsf~A~~~~~~~s~lSa~~l~~~~~~ 160 (163)
+.++.+.-|.+-|+.-|-.-+.-.++.++=+++.+.-.+..+.-+||.+=|++.
T Consensus 37 ~~e~~~~FW~a~CSArGv~i~~~s~asV~FY~sL~aV~vall~~aY~aCfRlft 90 (98)
T PF05702_consen 37 REESRRDFWSAACSARGVPIDFPSAASVLFYVSLLAVCVALLAYAYRACFRLFT 90 (98)
T ss_pred HhHHHhcccccccccCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444579999998887788888888887888777777777788887766653
No 5
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=19.31 E-value=1.5e+02 Score=17.29 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q 047574 83 ILDAVMTAVLTSSIS 97 (163)
Q Consensus 83 ~~Dqv~ayLl~saaa 97 (163)
..||..+|+|+-++-
T Consensus 13 aiDqgiay~Lm~~Al 27 (34)
T PF06376_consen 13 AIDQGIAYMLMLVAL 27 (34)
T ss_pred hhhHHHHHHHHHHHH
Confidence 469999999987643
No 6
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=16.37 E-value=1.6e+02 Score=19.45 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 047574 5 KRIITNLLRLIALGATVAAIV 25 (163)
Q Consensus 5 ~~~~~l~LR~~a~~~sl~a~~ 25 (163)
.+...++||++++++.+++++
T Consensus 55 ~~~l~l~L~lLal~lli~AlA 75 (77)
T PF07584_consen 55 RRHLLLLLRLLALALLILALA 75 (77)
T ss_pred hhhHHHHHHHHHHHHHHHHHc
Confidence 356788899999988887763
No 7
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=14.73 E-value=2.3e+02 Score=18.06 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh
Q 047574 49 PVFKYFVVAEAIACGYTLVVLIL 71 (163)
Q Consensus 49 ~af~ylv~an~i~~~Ysllql~~ 71 (163)
|=++|++++.++.++|-.+....
T Consensus 2 PwWvY~vi~gI~~S~ym~v~t~~ 24 (52)
T PF14147_consen 2 PWWVYFVIAGIIFSGYMAVKTAK 24 (52)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999998776554
No 8
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=13.92 E-value=7.3e+02 Score=20.51 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccceee-eeeeeeEecccchHHHHHHHHHHHHHHHHHHHHh----------hcc
Q 047574 6 RIITNLLRLIALGATVAAIVVMVTSHQSAEVF-NLTFTAKFSNEPVFKYFVVAEAIACGYTLVVLIL----------SSR 74 (163)
Q Consensus 6 ~~~~l~LR~~a~~~sl~a~~vM~t~~q~~~~~-~~~~~~~f~~~~af~ylv~an~i~~~Ysllql~~----------~~~ 74 (163)
|.-..++|++..+|+++-.--+.+.-=.+.-- +.+.=.==+|..+.+|=+++-..++.=++.-+.+ +.|
T Consensus 22 rkP~ti~R~~~~lFsliVf~si~~eGy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f~qISsv~~R 101 (233)
T KOG4016|consen 22 RKPQTILRVVSWLFSLIVFGSIVNEGYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYFPQISSVKDR 101 (233)
T ss_pred cCchhHHHHHHHHHHHhheeeeccccccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchh
Confidence 45678999999999887655444322111100 1112222367889999999988887777766665 112
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCccccc-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047574 75 SLLWRLIVILDAVMTAVLTSSISAALAIARVGKKGNSHAGWLPIC-GQVPKFCDHVTGALVCGFVAAIVYALLLVFSLYS 153 (163)
Q Consensus 75 ~~~~~~~f~~Dqv~ayLl~saaaAA~~i~~l~~~G~~~~~W~~vC-~~~~~FC~~~~~Si~lsf~A~~~~~~~s~lSa~~ 153 (163)
+.. .+.|.++..|-.--== .+-.++.. ||..-- +...-=-+.+.++|+.+|++++.-.....+.-.|
T Consensus 102 kra----Vl~Dl~~Salwtflwf--vGFc~l~n------qwqvs~p~~~~~~a~saraaIafsffSilsW~~~A~lA~qR 169 (233)
T KOG4016|consen 102 KRA----VLADLGVSALWAFLWF--VGFCFLAN------QWQVSKPKENPLGAGSARAAIAFSFFSILSWGGQAVLAFQR 169 (233)
T ss_pred HHH----HHHHHHHHHHHHHHHH--HHHHHHHH------HhhccCCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3445444432211100 01123322 342111 0111113478899999999988888887775544
No 9
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=11.95 E-value=9.6e+02 Score=20.77 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047574 77 LWRLIVILDAVMTAVLTSSISAALAIARVGKKGNSHAGWLPICGQVPKFCDHVTGALVCGFVAAIVYALLLVFSLYSA 154 (163)
Q Consensus 77 ~~~~~f~~Dqv~ayLl~saaaAA~~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsf~A~~~~~~~s~lSa~~l 154 (163)
.+.|.+.++|..-+++-+.+ -+|....+|.+-=+.++ ...+.-++-++.++++-+.+++|.+-+
T Consensus 200 ~~FFF~y~~q~~~~v~qAvg----------f~g~~~~G~i~ai~~~~----~~i~v~i~m~i~a~~Ft~~av~~i~~i 263 (313)
T KOG3088|consen 200 GAFFFTYFFQIVFCVFQAVG----------FPGWGLCGWIPAIDVLS----GNIAVGILMLIGAGLFTLEAVLSIWVL 263 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHc----------cCCcchhhhhhHhhccC----cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888776664332 35655567776444444 444445566777788888888887654
No 10
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=11.59 E-value=1.3e+02 Score=19.99 Aligned_cols=10 Identities=60% Similarity=1.079 Sum_probs=8.6
Q ss_pred chhhhHHHHH
Q 047574 124 KFCDHVTGAL 133 (163)
Q Consensus 124 ~FC~~~~~Si 133 (163)
.||+|+.+++
T Consensus 16 sFChrvta~L 25 (70)
T COG5515 16 SFCHRVTAAL 25 (70)
T ss_pred HHHHHHHHHH
Confidence 7999999875
Done!