Query 047574
Match_columns 163
No_of_seqs 126 out of 442
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 21:58:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_J Cytochrome C oxidase po 11.2 2.2E+02 0.0076 17.4 3.0 26 46-71 27-52 (59)
2 2y69_J Cytochrome C oxidase po 8.0 3.1E+02 0.011 17.9 2.9 27 45-71 47-73 (80)
3 2e2s_A Agelenin; cystine knot, 7.7 87 0.003 17.4 0.0 10 119-128 3-12 (36)
4 1jb0_X Photosystem I subunit P 5.7 3.7E+02 0.013 14.8 1.9 14 52-65 17-30 (35)
5 2lg4_A Aurelin; antimicrobial 6.6 1.6E+02 0.0055 16.8 0.0 13 117-129 10-22 (40)
6 3qoe_A Heterocyst differentiat 4.5 2.1E+02 0.0071 22.9 0.5 13 83-95 18-30 (302)
7 2kse_A Sensor protein QSEC; me 4.2 1.7E+02 0.0058 19.9 -0.2 16 1-16 1-16 (186)
8 2i2j_A Signaling peptide UA159 3.4 3E+02 0.01 13.9 0.3 10 150-159 6-15 (26)
9 1q2h_A APS, adaptor protein wi 3.1 2E+02 0.0068 18.4 -0.7 15 124-138 9-23 (69)
10 3ns4_A Vacuolar protein sortin 3.0 8.1E+02 0.028 19.6 2.8 20 123-142 25-44 (271)
No 1
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=11.19 E-value=2.2e+02 Score=17.45 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=21.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHh
Q 047574 46 SNEPVFKYFVVAEAIACGYTLVVLIL 71 (163)
Q Consensus 46 ~~~~af~ylv~an~i~~~Ysllql~~ 71 (163)
+|.--|++..+..+++.+|++-.+..
T Consensus 27 sd~~Ly~~t~~l~~~g~~~~~y~l~~ 52 (59)
T 1v54_J 27 TDNILYRVTMTLCLGGTLYSLYCLGW 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667888889999999998887764
No 2
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=8.02 E-value=3.1e+02 Score=17.91 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=21.9
Q ss_pred ecccchHHHHHHHHHHHHHHHHHHHHh
Q 047574 45 FSNEPVFKYFVVAEAIACGYTLVVLIL 71 (163)
Q Consensus 45 f~~~~af~ylv~an~i~~~Ysllql~~ 71 (163)
=+|.--|.+..+..+++.+|++-.+..
T Consensus 47 rsd~~Ly~~t~~l~~~G~~~~ly~l~~ 73 (80)
T 2y69_J 47 ATDNILYRVTMTLCLGGTLYSLYCLGW 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677899999999999998888764
No 3
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=7.72 E-value=87 Score=17.43 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=6.7
Q ss_pred cCCccchhhh
Q 047574 119 CGQVPKFCDH 128 (163)
Q Consensus 119 C~~~~~FC~~ 128 (163)
|-..++||+-
T Consensus 3 Clp~n~fCn~ 12 (36)
T 2e2s_A 3 CLPHNRFCNA 12 (36)
T ss_dssp SBCTTSCCCS
T ss_pred ccCCCCCccc
Confidence 6667777763
No 4
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=5.67 E-value=3.7e+02 Score=14.80 Aligned_cols=14 Identities=7% Similarity=0.235 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 047574 52 KYFVVAEAIACGYT 65 (163)
Q Consensus 52 ~ylv~an~i~~~Ys 65 (163)
..++++|-++++|=
T Consensus 17 lllLaINflVAayY 30 (35)
T 1jb0_X 17 VLLLAINFLVAAYY 30 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36888999998874
No 5
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=6.61 E-value=1.6e+02 Score=16.84 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=10.4
Q ss_pred cccCCccchhhhH
Q 047574 117 PICGQVPKFCDHV 129 (163)
Q Consensus 117 ~vC~~~~~FC~~~ 129 (163)
.+|.++..||+..
T Consensus 10 h~C~~f~e~C~d~ 22 (40)
T 2lg4_A 10 HICESFKSFCKDS 22 (40)
Confidence 4688888888876
No 6
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=4.52 E-value=2.1e+02 Score=22.91 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHH
Q 047574 83 ILDAVMTAVLTSS 95 (163)
Q Consensus 83 ~~Dqv~ayLl~sa 95 (163)
.+||++.||-+||
T Consensus 18 AmDqimlyLAFsA 30 (302)
T 3qoe_A 18 AMDQIMLYLAFSA 30 (302)
T ss_dssp HHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999998886
No 7
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=4.21 E-value=1.7e+02 Score=19.92 Aligned_cols=16 Identities=19% Similarity=0.139 Sum_probs=7.9
Q ss_pred CccchhhHHHHHHHHH
Q 047574 1 MTMTKRIITNLLRLIA 16 (163)
Q Consensus 1 ~~~~~~~~~l~LR~~a 16 (163)
|+|-.|..++-.|+..
T Consensus 1 ~~~m~~~~SLr~RL~l 16 (186)
T 2kse_A 1 MGKFTQRLSLRVRLTL 16 (186)
T ss_dssp CCSTTTCSSCCCCSHH
T ss_pred CCCCCCcccHHHHHHH
Confidence 5555444455555443
No 8
>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic}
Probab=3.40 E-value=3e+02 Score=13.90 Aligned_cols=10 Identities=10% Similarity=0.491 Sum_probs=6.4
Q ss_pred HHHHhhcCcc
Q 047574 150 SLYSALGPVF 159 (163)
Q Consensus 150 Sa~~l~~~~~ 159 (163)
..++||++.+
T Consensus 6 tffrlfnrsf 15 (26)
T 2i2j_A 6 TFFRLFNRSF 15 (26)
T ss_pred HHHHHHhHHH
Confidence 4567777664
No 9
>1q2h_A APS, adaptor protein with pleckstrin homology and SRC homology 2 domains; signal transduction, signaling protein; 1.70A {Homo sapiens} SCOP: a.34.4.1
Probab=3.11 E-value=2e+02 Score=18.43 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=8.5
Q ss_pred chhhhHHHHHHHHHH
Q 047574 124 KFCDHVTGALVCGFV 138 (163)
Q Consensus 124 ~FC~~~~~Si~lsf~ 138 (163)
.||++=..+.+--|.
T Consensus 9 EFCE~HAraAA~DfA 23 (69)
T 1q2h_A 9 QFCELHAQAAAVDFA 23 (69)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466666655555444
No 10
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=3.03 E-value=8.1e+02 Score=19.63 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=17.4
Q ss_pred cchhhhHHHHHHHHHHHHHH
Q 047574 123 PKFCDHVTGALVCGFVAAIV 142 (163)
Q Consensus 123 ~~FC~~~~~Si~lsf~A~~~ 142 (163)
..||++...+++-.|+.-+.
T Consensus 25 rnFcDK~ve~~~~~Fi~~Ii 44 (271)
T 3ns4_A 25 WNFLDKVIDIMTTNFVSNTI 44 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999988774
Done!