Query 047574
Match_columns 163
No_of_seqs 126 out of 442
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 21:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047574.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047574hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0x_ f.23.20.1 (X:) Subunit 6.4 1.6E+02 0.011 14.1 1.9 14 53-66 12-25 (29)
2 d1ppje2 f.23.12.1 (E:1-69) Iro 5.9 2.5E+02 0.018 16.3 3.2 21 85-107 32-52 (69)
3 d2jnea1 g.41.18.1 (A:1-71) Hyp 3.9 67 0.0049 19.2 -0.7 15 116-130 44-58 (71)
4 d2bbga_ g.6.1.1 (A:) Amb V all 3.2 1.3E+02 0.0098 15.3 0.2 10 118-127 18-27 (40)
5 d2ysca1 b.72.1.1 (A:8-33) Amyl 2.8 1.2E+02 0.009 14.4 -0.3 14 113-126 4-17 (26)
6 d1oede_ f.36.1.1 (E:) Acetylch 2.8 4.6E+02 0.033 17.6 2.9 14 114-127 221-234 (260)
7 d3cx5e2 f.23.12.1 (E:31-86) Ir 2.7 5.1E+02 0.037 14.2 3.0 15 86-100 23-37 (56)
8 d1svba2 f.10.1.1 (A:1-302) Env 2.5 1.4E+02 0.01 22.6 -0.5 18 107-124 93-110 (302)
9 d1tbrr2 g.68.1.1 (R:52-103) Bl 2.4 2.1E+02 0.015 15.3 0.4 11 113-123 12-22 (52)
10 d1bdsa_ g.9.1.1 (A:) BDs-I def 2.2 2E+02 0.014 14.8 0.1 6 114-119 34-39 (43)
No 1
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=6.36 E-value=1.6e+02 Score=14.09 Aligned_cols=14 Identities=7% Similarity=0.323 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHH
Q 047574 53 YFVVAEAIACGYTL 66 (163)
Q Consensus 53 ylv~an~i~~~Ysl 66 (163)
-++++|-+++.|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46778888887754
No 2
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.93 E-value=2.5e+02 Score=16.27 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 047574 85 DAVMTAVLTSSISAALAIARVGK 107 (163)
Q Consensus 85 Dqv~ayLl~saaaAA~~i~~l~~ 107 (163)
.+.+.|++.++++.+. +|-+|
T Consensus 32 Rk~fsYl~~g~~~v~~--ay~AK 52 (69)
T d1ppje2 32 RKGFSYLVTATTTVGV--AYAAK 52 (69)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHH
T ss_pred hceehhhhhhhHHHHH--HHHHH
Confidence 3677887777755554 34444
No 3
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=3.90 E-value=67 Score=19.24 Aligned_cols=15 Identities=47% Similarity=0.953 Sum_probs=11.4
Q ss_pred ccccCCccchhhhHH
Q 047574 116 LPICGQVPKFCDHVT 130 (163)
Q Consensus 116 ~~vC~~~~~FC~~~~ 130 (163)
.+-|+..|-||++.+
T Consensus 44 LkACGAvdYFC~~cn 58 (71)
T d2jnea1 44 LKACGAVDYFCQHGH 58 (71)
T ss_dssp EEETTEEEEEETTTT
T ss_pred HHhccchhhhhccCC
Confidence 457888889998754
No 4
>d2bbga_ g.6.1.1 (A:) Amb V allergen {Giant ragweed (Ambrosia trifida), pollen [TaxId: 4214]}
Probab=3.23 E-value=1.3e+02 Score=15.31 Aligned_cols=10 Identities=30% Similarity=0.966 Sum_probs=6.2
Q ss_pred ccCCccchhh
Q 047574 118 ICGQVPKFCD 127 (163)
Q Consensus 118 vC~~~~~FC~ 127 (163)
-|++.+++|-
T Consensus 18 ccspigkycv 27 (40)
T d2bbga_ 18 CCSPIGKYCV 27 (40)
T ss_dssp EECSSSSSCE
T ss_pred ecccccCEEE
Confidence 3666677663
No 5
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.79 E-value=1.2e+02 Score=14.35 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=10.2
Q ss_pred CCcccccCCccchh
Q 047574 113 AGWLPICGQVPKFC 126 (163)
Q Consensus 113 ~~W~~vC~~~~~FC 126 (163)
.+|.++++..+.|.
T Consensus 4 pGW~~i~D~ag~Yy 17 (26)
T d2ysca1 4 PGWRKIHDAAGTYY 17 (26)
T ss_dssp TTEEEEEETTEEEE
T ss_pred ccceeeeccCceEE
Confidence 47999988776553
No 6
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.75 E-value=4.6e+02 Score=17.63 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=6.9
Q ss_pred CcccccCCccchhh
Q 047574 114 GWLPICGQVPKFCD 127 (163)
Q Consensus 114 ~W~~vC~~~~~FC~ 127 (163)
.|..+-...||+|-
T Consensus 221 eW~~vA~viDR~~l 234 (260)
T d1oede_ 221 NWVLIGKVIDKACF 234 (260)
T ss_dssp -----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58888888888774
No 7
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.69 E-value=5.1e+02 Score=14.21 Aligned_cols=15 Identities=0% Similarity=-0.011 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 047574 86 AVMTAVLTSSISAAL 100 (163)
Q Consensus 86 qv~ayLl~saaaAA~ 100 (163)
+.+.|++.++.+...
T Consensus 23 r~fsY~mvGs~g~~~ 37 (56)
T d3cx5e2 23 RSYAYFMVGAMGLLS 37 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ceEEEEeeehhHHHH
Confidence 456677666655444
No 8
>d1svba2 f.10.1.1 (A:1-302) Envelope glycoprotein {Tick-borne encephalitis virus [TaxId: 11084]}
Probab=2.47 E-value=1.4e+02 Score=22.62 Aligned_cols=18 Identities=39% Similarity=0.745 Sum_probs=13.7
Q ss_pred hcCCCcCCcccccCCccc
Q 047574 107 KKGNSHAGWLPICGQVPK 124 (163)
Q Consensus 107 ~~G~~~~~W~~vC~~~~~ 124 (163)
|+|.++-+|..-|+.|+|
T Consensus 93 Kr~~sDRGWGNGCGLFGK 110 (302)
T d1svba2 93 KRDQSDRGWGNHCGLFGK 110 (302)
T ss_dssp EEEEEEESGGGTCSSCEE
T ss_pred ccCCcCcccccccccccC
Confidence 456666789999998875
No 9
>d1tbrr2 g.68.1.1 (R:52-103) Blood-sucking insect-derived tryptase inhibitor {Bug (Rhodnius prolixus), rhodniin [TaxId: 13249]}
Probab=2.38 E-value=2.1e+02 Score=15.26 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=8.0
Q ss_pred CCcccccCCcc
Q 047574 113 AGWLPICGQVP 123 (163)
Q Consensus 113 ~~W~~vC~~~~ 123 (163)
..|.+||+..+
T Consensus 12 ~~~~PVCGsDg 22 (52)
T d1tbrr2 12 DEYKPVCGSDD 22 (52)
T ss_dssp CCCCCEEETTT
T ss_pred cCCcccCCCCC
Confidence 45889998554
No 10
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=2.23 E-value=2e+02 Score=14.82 Aligned_cols=6 Identities=50% Similarity=1.409 Sum_probs=4.3
Q ss_pred Cccccc
Q 047574 114 GWLPIC 119 (163)
Q Consensus 114 ~W~~vC 119 (163)
.|+.+|
T Consensus 34 kwpnic 39 (43)
T d1bdsa_ 34 KWPNIC 39 (43)
T ss_dssp ETTEEE
T ss_pred cCCccc
Confidence 577777
Done!