BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047575
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
           Complex Bound To A Fragment Of U2 Small Nuclear Rna
 pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
           Complex Bound To A Fragment Of U2 Small Nuclear Rna
          Length = 176

 Score = 30.8 bits (68), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 93  LTFELLKA---FTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYI 149
           LT EL++    +TN  + D    +  YK P++E +G TL      +DF+  E ++ D + 
Sbjct: 4   LTAELIEQAAQYTNA-VRDRELDLRGYKIPVIENLGATLDQFDA-IDFSDNEIRKLDGFP 61

Query: 150 WALKRLKTIM 159
             L+RLKT++
Sbjct: 62  L-LRRLKTLL 70


>pdb|2QR4|A Chain A, Crystal Structure Of Oligoendopeptidase-F From
           Enterococcus Faecium
 pdb|2QR4|B Chain B, Crystal Structure Of Oligoendopeptidase-F From
           Enterococcus Faecium
          Length = 587

 Score = 27.3 bits (59), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 21  VAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTL 59
           +  H++GH+F  ++ N   +    LS N++ P+ ++ TL
Sbjct: 215 LGTHIKGHNFKAKVRNYSSAREASLSNNHI-PESVYDTL 252


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,037,339
Number of Sequences: 62578
Number of extensions: 182074
Number of successful extensions: 707
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 707
Number of HSP's gapped (non-prelim): 4
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)