BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047575
(176 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6
PE=2 SV=1
Length = 703
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 86 DIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKRE 145
++FWA + F +V+ +D +Y K++ PL+ GV T + +L +
Sbjct: 279 NVFWADAFSKVSCSYFGDVIFIDSSYISGKFEIPLVTFTGVNHHGKTTLLSCGFLAGETM 338
Query: 146 DNYIWALKRLKTIMQDDMLPSVIVIKR 172
++Y W LK ++M+ P IV R
Sbjct: 339 ESYHWLLKVWLSVMKRS--PQTIVTDR 363
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5
PE=2 SV=1
Length = 788
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 86 DIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKRE 145
++FWA P F + + D TY+ N+Y+ P GV A++ ++ E
Sbjct: 281 NVFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETE 340
Query: 146 DNYIW 150
+++W
Sbjct: 341 ASFVW 345
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3
PE=2 SV=2
Length = 851
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 86 DIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKRE 145
++FWA + F + + +D Y+ N+++ P GV A + + +
Sbjct: 228 NVFWADSRSRVAYTHFGDTVTLDTRYRCNQFRVPFAPFTGVNHHGQAILFGCALILDESD 287
Query: 146 DNYIWALKRLKTIMQDDMLPSVIVI 170
++IW K T M+D P V ++
Sbjct: 288 TSFIWLFKTFLTAMRDQ--PPVSLV 310
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4
PE=2 SV=2
Length = 732
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 86 DIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGV 126
++FW E K+F++V+ + +Y V+KYK PL+ VGV
Sbjct: 194 NVFWVDAKGIEDYKSFSDVVSFETSYFVSKYKVPLVLFVGV 234
>sp|Q9S793|FRS8_ARATH Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8
PE=2 SV=2
Length = 725
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 86 DIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKRE 145
++FW F +VL+ D T N Y+ PL+ VG+ T + L +
Sbjct: 303 NVFWIDARARAAYSHFGDVLLFDTTCLSNAYELPLVAFVGINHHGDTILLGCGLLADQSF 362
Query: 146 DNYIWALKRLKTIM 159
+ Y+W + T M
Sbjct: 363 ETYVWLFRAWLTCM 376
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana
GN=FHY3 PE=1 SV=1
Length = 839
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 86 DIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKRE 145
++FW + +F +V+ +D TY NKYK PL VGV + A + +
Sbjct: 266 NVFWVDAKSRHNYGSFCDVVSLDTTYVRNKYKMPLAIFVGVNQHYQYMVLGCALISDESA 325
Query: 146 DNYIWALK 153
Y W ++
Sbjct: 326 ATYSWLME 333
>sp|P57784|RU2A_MOUSE U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1
PE=1 SV=2
Length = 255
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 93 LTFELLKA---FTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYI 149
LT EL++ +TN + D + YK P++E +G TL +DF+ E ++ D +
Sbjct: 4 LTAELIEQAAQYTNA-VRDRELDLRGYKIPVIENLGATLDQFDA-IDFSDNEIRKLDGFP 61
Query: 150 WALKRLKTIM 159
L+RLKT++
Sbjct: 62 L-LRRLKTLL 70
>sp|Q4R8Y8|RU2A_MACFA U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis
GN=SNRPA1 PE=2 SV=1
Length = 255
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 93 LTFELLKA---FTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYI 149
LT EL++ +TN + D + YK P++E +G TL +DF+ E ++ D +
Sbjct: 4 LTAELIEQAAQYTNA-VRDRELDLRGYKIPVIENLGATLDQFDA-IDFSDNEIRKLDGFP 61
Query: 150 WALKRLKTIM 159
L+RLKT++
Sbjct: 62 L-LRRLKTLL 70
>sp|P09661|RU2A_HUMAN U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1
PE=1 SV=2
Length = 255
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 93 LTFELLKA---FTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYI 149
LT EL++ +TN + D + YK P++E +G TL +DF+ E ++ D +
Sbjct: 4 LTAELIEQAAQYTNA-VRDRELDLRGYKIPVIENLGATLDQFDA-IDFSDNEIRKLDGFP 61
Query: 150 WALKRLKTIM 159
L+RLKT++
Sbjct: 62 L-LRRLKTLL 70
>sp|A2RHJ5|SECA_LACLM Protein translocase subunit SecA OS=Lactococcus lactis subsp.
cremoris (strain MG1363) GN=secA PE=3 SV=1
Length = 865
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 9 MLKVICGLHNHHVAQHLEGHSFAGRLTNEE-VSTLVDLSKNNVRPKE 54
M V+ G+ + + ++GH AG L +EE V L+ +N + P+E
Sbjct: 643 MTPVLMGMFKRTIDRQVDGHELAGNLKDEETVKDLLQTVQNTMLPEE 689
>sp|Q032Z6|SECA_LACLS Protein translocase subunit SecA OS=Lactococcus lactis subsp.
cremoris (strain SK11) GN=secA PE=3 SV=1
Length = 865
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 9 MLKVICGLHNHHVAQHLEGHSFAGRLTNEE-VSTLVDLSKNNVRPKE 54
M V+ G+ + + ++GH AG L +EE V L+ +N + P+E
Sbjct: 643 MTPVLMGMFKRTIDRQVDGHELAGNLKDEETVKDLLQTVQNTMLPEE 689
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12
PE=2 SV=1
Length = 788
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 85 LDIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKR 144
+ IFWA F + ++ D +Y+ Y P I+G + A + +
Sbjct: 380 MSIFWADSRARFACSQFGDSVVFDTSYRKGSYSVPFATIIGFNHHRQPVLLGCAMVADES 439
Query: 145 EDNYIWAL---------KRLKTIMQDDMLP 165
++ ++W +R ++I+ D LP
Sbjct: 440 KEAFLWLFQTWLRAMSGRRPRSIVADQDLP 469
>sp|A5IM09|TRUA_THEP1 tRNA pseudouridine synthase A OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=truA PE=3 SV=1
Length = 245
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 13 ICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKA 72
I L N V +EG SF R+ V+ LV + P+++ L+ RD S A
Sbjct: 175 ILRLKNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDR-SAAAGTA 233
Query: 73 ICNARYKYKV 82
+ Y YKV
Sbjct: 234 PAHGLYFYKV 243
>sp|Q9X1R0|TRUA_THEMA tRNA pseudouridine synthase A OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=truA PE=3 SV=1
Length = 245
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 13 ICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKA 72
I L N V +EG SF R+ V+ LV + P+++ L+ RD S A
Sbjct: 175 ILRLKNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDR-SAAAGTA 233
Query: 73 ICNARYKYKV 82
+ Y YKV
Sbjct: 234 PAHGLYFYKV 243
>sp|A8BFN4|OGT1_GIAIC UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
OS=Giardia intestinalis (strain ATCC 50803 / WB clone
C6) GN=GL50803_12081 PE=1 SV=1
Length = 1480
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 23 QHLEGHSFAGRLTNEEVSTLVDLSKN---NVRP-KEIFHTLKTRDTFSVTMMK--AICNA 76
++ E + S + LSK ++ P KE+F L T DTF T++ AICN+
Sbjct: 128 RYSEAEKLLSSIVESSTSNTITLSKQFKEDIGPFKELFGVLDTYDTFLATILNNLAICNS 187
Query: 77 RYKYKVCELDIF 88
+ D F
Sbjct: 188 KLGNHTLAFDQF 199
>sp|B1LB83|TRUA_THESQ tRNA pseudouridine synthase A OS=Thermotoga sp. (strain RQ2)
GN=truA PE=3 SV=1
Length = 245
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 13 ICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKA 72
I L N V +EG SF R+ V+ LV + P+++ L+ RD S A
Sbjct: 175 ILRLKNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDR-SAAAGTA 233
Query: 73 ICNARYKYKV 82
+ Y YKV
Sbjct: 234 PAHGLYFYKV 243
>sp|Q57081|HMW3_MYCGE Cytadherence high molecular weight protein 3 OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=hmw3 PE=3 SV=1
Length = 599
Score = 29.6 bits (65), Expect = 9.3, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 111 YKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNY 148
Y KY PL +LT+ F++DF Y R +NY
Sbjct: 481 YVATKYSDPLYSDTNQSLTSDRFSLDFDYTPKSRVNNY 518
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,164,178
Number of Sequences: 539616
Number of extensions: 2228217
Number of successful extensions: 6251
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6239
Number of HSP's gapped (non-prelim): 22
length of query: 176
length of database: 191,569,459
effective HSP length: 110
effective length of query: 66
effective length of database: 132,211,699
effective search space: 8725972134
effective search space used: 8725972134
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)