Query 047575
Match_columns 176
No_of_seqs 123 out of 659
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 22:00:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_N S27A, YS15, 40S ribosom 95.0 0.07 2.4E-06 37.5 6.1 34 31-64 25-59 (151)
2 2xzm_O RPS13E; ribosome, trans 92.3 0.28 9.6E-06 34.5 5.3 35 30-64 26-61 (153)
3 3j20_Q 30S ribosomal protein S 90.7 0.35 1.2E-05 34.2 4.6 35 30-64 24-59 (158)
4 3kks_A Integrase, IN; beta-str 86.9 3.6 0.00012 27.6 7.7 62 102-174 2-63 (152)
5 1tc3_C Protein (TC3 transposas 80.8 4 0.00014 21.5 4.8 42 32-80 4-45 (51)
6 1je8_A Nitrate/nitrite respons 80.3 2 6.9E-05 26.5 3.7 64 15-82 3-66 (82)
7 3hph_A Integrase, IN; protein- 77.3 12 0.00041 26.9 7.8 61 103-174 61-121 (219)
8 3l3u_A POL polyprotein; DNA in 72.8 17 0.0006 24.5 7.3 62 102-174 9-70 (163)
9 1cxq_A Avian sarcoma virus int 72.5 20 0.00067 24.4 8.4 67 102-174 11-77 (162)
10 1c0m_A Protein (integrase); HI 71.6 26 0.00089 25.7 8.5 67 102-174 10-76 (238)
11 2xv9_A ABA-1A1 repeat UNIT; li 68.0 6.5 0.00022 27.0 4.0 47 16-64 5-51 (134)
12 1bco_A MUA domain II, bacterio 67.5 28 0.00095 27.0 8.2 71 101-175 15-93 (327)
13 3beg_B Splicing factor, argini 65.9 8 0.00027 25.1 4.1 46 91-159 30-75 (115)
14 2kw0_A CCMH protein; oxidoredu 65.7 1.8 6.1E-05 27.7 0.7 34 33-66 40-73 (90)
15 3f9k_A Integrase; protein-prot 64.4 26 0.00089 24.9 7.1 62 103-175 60-121 (210)
16 2hl7_A Cytochrome C-type bioge 62.7 2.1 7.1E-05 27.1 0.6 34 33-66 43-76 (84)
17 1c6v_A Protein (SIV integrase) 61.1 33 0.0011 22.8 6.9 63 102-175 9-71 (164)
18 1u78_A TC3 transposase, transp 59.9 17 0.00058 23.9 5.0 42 32-80 5-46 (141)
19 2fq3_A Transcription regulator 56.5 28 0.00094 22.7 5.2 61 15-75 6-75 (104)
20 1x4c_A Splicing factor, argini 55.7 8.3 0.00028 24.6 2.7 41 93-156 31-71 (108)
21 2x78_A Integrase; viral protei 54.3 52 0.0018 22.9 8.3 66 102-174 13-79 (200)
22 1pdn_C Protein (PRD paired); p 54.2 17 0.00058 23.3 4.1 43 32-81 16-58 (128)
23 4adn_A FAR1; antibiotic resist 54.1 33 0.0011 25.6 5.9 67 33-99 59-141 (222)
24 4fxv_A ELAV-like protein 1; RN 53.6 36 0.0012 21.2 5.5 49 92-156 34-82 (99)
25 2glo_A Brinker CG9653-PA; prot 52.1 13 0.00044 21.0 2.8 48 31-81 3-50 (59)
26 4f25_A Polyadenylate-binding p 50.8 25 0.00087 22.5 4.5 51 91-159 19-69 (115)
27 1k78_A Paired box protein PAX5 50.0 21 0.00071 24.0 4.1 44 31-81 30-73 (149)
28 3ulq_B Transcriptional regulat 48.3 27 0.00092 21.7 4.2 29 31-60 27-55 (90)
29 2kvc_A Putative uncharacterize 47.7 27 0.00093 22.7 4.1 50 31-81 36-87 (103)
30 3av9_A Integrase, IN; protein- 47.5 62 0.0021 22.3 6.5 61 102-173 29-89 (183)
31 1p4w_A RCSB; solution structur 46.7 33 0.0011 21.8 4.4 29 31-60 32-60 (99)
32 1wgn_A UBAP1, ubiquitin associ 46.1 11 0.00037 22.3 1.7 38 28-65 9-46 (63)
33 3s8s_A Histone-lysine N-methyl 46.1 46 0.0016 21.2 5.2 62 92-169 21-82 (110)
34 1jko_C HIN recombinase, DNA-in 44.9 11 0.00037 20.0 1.7 41 32-79 4-44 (52)
35 1ex4_A Integrase; SH3-like dom 44.8 71 0.0024 23.1 6.7 62 102-174 9-70 (239)
36 2m0n_A Putative uncharacterize 43.5 52 0.0018 21.7 5.0 49 31-80 38-95 (112)
37 2lky_A Uncharacterized protein 42.6 26 0.0009 23.2 3.4 50 31-81 38-89 (112)
38 3p5t_L Cleavage and polyadenyl 41.9 36 0.0012 20.6 4.0 34 134-167 44-77 (90)
39 2k27_A Paired box protein PAX- 40.5 20 0.00067 24.5 2.8 44 31-81 23-66 (159)
40 2elh_A CG11849-PA, LD40883P; s 40.1 33 0.0011 21.0 3.6 44 31-81 20-63 (87)
41 2cpf_A RNA binding motif prote 39.7 57 0.002 19.8 4.8 53 92-157 20-72 (98)
42 2jrs_A RNA-binding protein 39; 39.0 71 0.0024 20.1 5.4 27 133-159 66-92 (108)
43 2nlw_A Eukaryotic translation 38.8 49 0.0017 20.6 4.4 47 93-157 37-83 (105)
44 2krb_A Eukaryotic translation 38.7 32 0.0011 20.2 3.3 44 93-154 23-66 (81)
45 2dgv_A HnRNP M, heterogeneous 38.5 63 0.0021 19.3 4.9 49 93-159 24-72 (92)
46 1k6y_A Integrase; HIV-1, domai 38.1 1E+02 0.0035 21.6 7.8 64 101-175 57-120 (212)
47 2j8a_A Histone-lysine N-methyl 36.8 75 0.0026 21.7 5.1 50 92-157 21-75 (136)
48 2dnz_A Probable RNA-binding pr 36.4 37 0.0013 20.5 3.4 60 92-167 20-79 (95)
49 1k78_A Paired box protein PAX5 35.6 54 0.0019 21.8 4.4 50 31-80 88-142 (149)
50 2wbr_A GW182, gawky, LD47780P; 35.2 54 0.0018 20.6 3.9 45 91-157 21-65 (89)
51 2d9o_A DNAJ (HSP40) homolog, s 33.9 58 0.002 20.6 4.1 41 93-154 33-73 (100)
52 1mus_A TN5 transposase; hairpi 33.8 2E+02 0.007 23.8 8.6 59 115-175 121-192 (477)
53 2o8x_A Probable RNA polymerase 33.6 66 0.0022 18.0 4.1 29 32-60 14-42 (70)
54 4ae4_A Ubiquitin-associated pr 33.4 32 0.0011 22.9 2.8 32 33-64 3-34 (118)
55 2e5j_A Methenyltetrahydrofolat 32.9 41 0.0014 20.6 3.2 33 136-168 57-89 (97)
56 1dv0_A DNA repair protein HHR2 32.9 29 0.001 18.9 2.2 30 35-64 1-30 (47)
57 2dgo_A Cytotoxic granule-assoc 32.1 75 0.0026 19.9 4.5 51 92-158 30-80 (115)
58 2jvr_A Nucleolar protein 3; RN 32.1 27 0.00092 22.6 2.2 22 136-157 68-89 (111)
59 3bs9_A Nucleolysin TIA-1 isofo 31.9 79 0.0027 18.5 5.3 51 92-158 21-71 (87)
60 2jml_A DNA binding domain/tran 31.8 27 0.00092 21.1 2.1 35 30-64 41-79 (81)
61 1b0n_B Protein (SINI protein); 31.6 51 0.0017 19.0 3.1 31 32-62 9-39 (57)
62 1p27_B RNA-binding protein 8A; 31.3 93 0.0032 19.1 5.3 51 93-159 39-89 (106)
63 2k27_A Paired box protein PAX- 31.2 50 0.0017 22.4 3.7 52 31-82 81-137 (159)
64 3ns6_A Eukaryotic translation 31.1 76 0.0026 19.5 4.3 51 93-159 28-78 (100)
65 1z96_A DNA-damage, UBA-domain 31.0 37 0.0013 17.3 2.3 28 38-65 4-31 (40)
66 2cq3_A RNA-binding protein 9; 30.8 60 0.0021 19.9 3.8 48 93-158 31-78 (103)
67 3c57_A Two component transcrip 30.7 70 0.0024 19.7 4.1 30 31-61 25-54 (95)
68 1u04_A Argonaute, hypothetical 30.6 2.7E+02 0.0091 24.7 8.8 70 104-174 555-630 (771)
69 2do0_A HnRNP M, heterogeneous 30.3 97 0.0033 19.3 4.8 62 92-170 30-91 (114)
70 2yb5_A FUSC, putative fusidic 29.9 44 0.0015 24.7 3.3 65 33-97 51-131 (215)
71 1sjr_A Polypyrimidine tract-bi 29.8 63 0.0021 22.7 4.0 43 94-156 63-105 (164)
72 1g2y_A Hepatocyte nuclear fact 29.7 18 0.00061 18.2 0.8 28 33-60 4-31 (32)
73 3md1_A Nuclear and cytoplasmic 29.2 86 0.003 18.1 5.2 50 92-157 16-65 (83)
74 2cqi_A Nucleolysin TIAR; RNA r 29.0 96 0.0033 18.9 4.5 49 92-158 30-78 (103)
75 2d9p_A Polyadenylate-binding p 28.9 78 0.0027 19.4 4.1 58 93-168 31-88 (103)
76 1mzb_A Ferric uptake regulatio 28.9 1E+02 0.0035 20.4 4.9 49 32-82 14-65 (136)
77 3n9u_C Cleavage and polyadenyl 28.7 1E+02 0.0034 21.0 4.9 50 92-157 70-121 (156)
78 4a8x_A RNA-binding protein wit 28.4 65 0.0022 18.9 3.5 53 92-159 19-71 (88)
79 2jn6_A Protein CGL2762, transp 28.3 95 0.0032 19.0 4.4 43 32-81 4-48 (97)
80 2div_A TRNA selenocysteine ass 28.2 78 0.0027 19.1 4.0 51 92-158 24-75 (99)
81 2dit_A HIV TAT specific factor 27.7 35 0.0012 21.7 2.2 22 136-157 65-86 (112)
82 2do4_A Squamous cell carcinoma 27.5 1.1E+02 0.0036 18.6 5.0 50 93-159 33-82 (100)
83 3ulh_A THO complex subunit 4; 27.2 1.1E+02 0.0038 18.7 5.4 50 93-159 45-94 (107)
84 3e1k_B Lactose regulatory prot 27.2 29 0.001 15.6 1.2 10 68-77 8-17 (22)
85 2cqc_A Arginine/serine-rich sp 27.2 1E+02 0.0035 18.3 5.3 50 92-157 30-79 (95)
86 2cph_A RNA binding motif prote 26.6 1.1E+02 0.0037 18.7 4.5 49 92-155 30-78 (107)
87 2hvz_A Splicing factor, argini 26.6 1.1E+02 0.0038 18.5 4.9 54 93-167 16-69 (101)
88 2cpz_A CUG triplet repeat RNA- 26.6 1E+02 0.0034 19.3 4.4 25 134-158 66-90 (115)
89 4f02_A Polyadenylate-binding p 26.5 1.3E+02 0.0043 21.3 5.3 51 92-158 30-80 (213)
90 3hot_A Transposable element ma 26.4 76 0.0026 24.3 4.4 43 37-79 10-52 (345)
91 2ba3_A NIKA; dimer, bacterial 26.4 29 0.001 18.9 1.4 26 33-58 21-47 (51)
92 2yha_A Post-transcriptional ge 25.7 1.5E+02 0.0051 23.8 6.0 69 104-173 159-244 (388)
93 2rpr_A Flywch-type zinc finger 25.2 32 0.0011 21.2 1.6 10 13-22 65-74 (87)
94 2kt5_A RNA and export factor-b 25.2 56 0.0019 21.0 2.9 36 135-170 76-111 (124)
95 3bts_E Regulatory protein GAL4 24.6 36 0.0012 16.0 1.3 10 68-77 6-15 (26)
96 2kxn_B Transformer-2 protein h 24.4 99 0.0034 20.2 4.1 50 94-159 63-112 (129)
97 2ywk_A Putative RNA-binding pr 24.3 1.2E+02 0.0041 18.0 6.1 50 93-159 32-81 (95)
98 2x1f_A MRNA 3'-END-processing 24.0 89 0.003 18.8 3.6 51 92-158 17-67 (96)
99 1x5s_A Cold-inducible RNA-bind 23.8 95 0.0032 18.9 3.8 36 135-170 54-89 (102)
100 3q2s_C Cleavage and polyadenyl 23.6 82 0.0028 23.0 3.9 60 92-167 83-144 (229)
101 1u6f_A Tcubp1, RNA-binding pro 23.6 1.2E+02 0.0042 19.6 4.5 50 93-158 58-107 (139)
102 3d2w_A TAR DNA-binding protein 23.3 71 0.0024 19.3 3.0 36 93-149 27-62 (89)
103 1yb3_A Hypothetical protein; s 23.1 1.4E+02 0.0048 21.1 4.6 49 101-149 48-99 (175)
104 2yhb_A QDE-2, post-transcripti 23.1 1.6E+02 0.0055 24.0 5.8 68 104-173 159-244 (437)
105 3r27_A HnRNP L, heterogeneous 23.0 1.2E+02 0.004 19.2 4.1 44 93-158 37-80 (100)
106 1wf1_A RNA-binding protein RAL 23.0 47 0.0016 20.8 2.1 42 93-158 44-85 (110)
107 2fy1_A RNA-binding motif prote 22.8 65 0.0022 20.6 2.8 48 93-157 23-70 (116)
108 1sjq_A Polypyrimidine tract-bi 22.8 1.1E+02 0.0037 19.6 3.9 42 93-156 32-73 (105)
109 2ad9_A Polypyrimidine tract-bi 22.7 1.3E+02 0.0045 19.6 4.4 22 136-157 68-89 (119)
110 2w57_A Ferric uptake regulatio 22.7 1.1E+02 0.0037 20.7 4.1 49 32-82 13-64 (150)
111 1whw_A Hypothetical protein ri 22.7 1.2E+02 0.0039 18.3 4.0 50 92-157 23-72 (99)
112 2dnh_A Bruno-like 5, RNA bindi 22.4 1.4E+02 0.0048 18.1 5.2 50 92-158 30-79 (105)
113 2err_A Ataxin-2-binding protei 22.3 73 0.0025 20.0 3.0 24 135-158 69-92 (109)
114 2dnm_A SRP46 splicing factor; 22.1 81 0.0028 19.3 3.2 63 92-170 28-90 (103)
115 1x4a_A Splicing factor, argini 22.1 93 0.0032 19.3 3.5 47 93-158 38-84 (109)
116 3hot_A Transposable element ma 22.0 2.6E+02 0.0089 21.1 6.9 55 117-174 188-252 (345)
117 2g3q_A Protein YBL047C; endocy 21.9 81 0.0028 16.4 2.7 26 40-65 6-31 (43)
118 2dh8_A DAZ-associated protein 21.7 1.5E+02 0.005 18.1 5.7 46 93-154 32-77 (105)
119 2pe8_A Splicing factor 45; RRM 21.6 1.1E+02 0.0039 19.2 3.8 50 93-157 29-78 (105)
120 2dnq_A RNA-binding protein 4B; 21.6 59 0.002 19.4 2.3 42 92-157 23-64 (90)
121 2i2y_A Fusion protein consists 21.6 64 0.0022 21.5 2.7 57 90-167 86-142 (150)
122 1rk8_A CG8781-PA, CG8781-PA pr 21.5 1.9E+02 0.0066 19.4 5.7 50 93-158 88-137 (165)
123 1irz_A ARR10-B; helix-turn-hel 21.5 1.3E+02 0.0043 17.7 3.6 46 33-82 9-58 (64)
124 3hug_A RNA polymerase sigma fa 21.5 89 0.003 18.9 3.2 28 33-60 37-64 (92)
125 1p1t_A Cleavage stimulation fa 21.4 1.1E+02 0.0037 18.6 3.7 49 93-157 24-72 (104)
126 1ify_A HHR23A, UV excision rep 21.0 1.1E+02 0.0037 16.6 3.1 29 37-65 7-35 (49)
127 1vcc_A DNA topoisomerase I; DN 21.0 93 0.0032 18.8 2.9 31 102-135 41-71 (77)
128 2xnq_A Nuclear polyadenylated 20.8 71 0.0024 19.6 2.6 42 93-158 39-80 (97)
129 2cqg_A TDP-43, TAR DNA-binding 20.8 1.5E+02 0.0052 17.9 4.9 46 93-154 31-76 (103)
130 3ol3_A Putative uncharacterize 20.7 81 0.0028 20.6 2.9 49 31-80 41-95 (107)
131 1x5p_A Negative elongation fac 20.7 75 0.0026 19.3 2.7 43 92-156 28-70 (97)
132 1x5o_A RNA binding motif, sing 20.7 1.4E+02 0.0047 18.6 4.1 46 94-156 42-87 (114)
133 2fe3_A Peroxide operon regulat 20.6 1.8E+02 0.0063 19.3 4.9 47 33-81 19-67 (145)
134 3mdf_A Peptidyl-prolyl CIS-tra 20.6 1.2E+02 0.004 17.5 3.6 49 93-157 23-71 (85)
135 1x4g_A Nucleolysin TIAR; struc 20.4 65 0.0022 20.1 2.4 45 92-158 40-84 (109)
136 1h2v_Z 20 kDa nuclear CAP bind 20.3 1.8E+02 0.006 19.3 4.8 50 92-157 54-103 (156)
137 2diu_A KIAA0430 protein; struc 20.2 64 0.0022 20.6 2.3 36 96-157 32-68 (96)
No 1
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=94.96 E-value=0.07 Score=37.51 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=29.3
Q ss_pred CCCCCHHHH-HhhhhhccCCCChhHHHHHhhhcCC
Q 047575 31 AGRLTNEEV-STLVDLSKNNVRPKEIFHTLKTRDT 64 (176)
Q Consensus 31 ~r~ls~~~~-~~i~~l~~~g~~~~~I~~~l~~~~~ 64 (176)
.-++++++. +.|.+|.+.|+.|+||-.+|++++|
T Consensus 25 W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~G 59 (151)
T 3u5c_N 25 WFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHG 59 (151)
T ss_dssp SCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCC
Confidence 346787664 8899999999999999999999985
No 2
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=92.28 E-value=0.28 Score=34.47 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=29.8
Q ss_pred cCCCCCHHHH-HhhhhhccCCCChhHHHHHhhhcCC
Q 047575 30 FAGRLTNEEV-STLVDLSKNNVRPKEIFHTLKTRDT 64 (176)
Q Consensus 30 ~~r~ls~~~~-~~i~~l~~~g~~~~~I~~~l~~~~~ 64 (176)
..-++++++. +.|.+|.+.|+.|+||-.+|++++|
T Consensus 26 ~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~G 61 (153)
T 2xzm_O 26 KWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHG 61 (153)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSC
T ss_pred ccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCC
Confidence 3346787664 8899999999999999999999986
No 3
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.73 E-value=0.35 Score=34.25 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=29.7
Q ss_pred cCCCCCHHHH-HhhhhhccCCCChhHHHHHhhhcCC
Q 047575 30 FAGRLTNEEV-STLVDLSKNNVRPKEIFHTLKTRDT 64 (176)
Q Consensus 30 ~~r~ls~~~~-~~i~~l~~~g~~~~~I~~~l~~~~~ 64 (176)
..-++++++. +.|.+|.+.|+.|+||-.+|++++|
T Consensus 24 ~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~g 59 (158)
T 3j20_Q 24 IWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYG 59 (158)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCC
Confidence 3346787775 8899999999999999999999886
No 4
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=86.94 E-value=3.6 Score=27.60 Aligned_cols=62 Identities=10% Similarity=-0.048 Sum_probs=38.7
Q ss_pred CcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCC
Q 047575 102 TNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKREL 174 (176)
Q Consensus 102 ~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~ 174 (176)
.++..+|.|+..++ +.++.+|...+-. ++. .+.+++.+...-++..+...+ + |++|.+|+..
T Consensus 2 n~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~-~~~~~~~~~~~~~l~~~~~~~--g--p~~i~sDnG~ 63 (152)
T 3kks_A 2 SHLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQ-VIPEETALQVALCILQLIQRY--T--VLHLHSDNGP 63 (152)
T ss_dssp CCEEEEEEEEETTE-----EEEEEEETTTCCE-EEE-EESSSCHHHHHHHHHHHHHHS--C--CSEEEECSCH
T ss_pred CcEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEE-EeCCcCHHHHHHHHHHHHHHh--C--CcEEecCCch
Confidence 36788999987443 4466667666644 444 345666665555554433332 3 9999999863
No 5
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=80.84 E-value=4 Score=21.54 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=31.1
Q ss_pred CCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhhc
Q 047575 32 GRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKY 80 (176)
Q Consensus 32 r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~ 80 (176)
++++++++..|..+...|.+.++|...+. +....|+++..+.
T Consensus 4 ~~l~~~~~~~i~~~~~~g~s~~~IA~~lg-------is~~Tv~~~~~~~ 45 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLNVSLHEMSRKIS-------RSRHCIRVYLKDP 45 (51)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHT-------CCHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHC-------cCHHHHHHHHhhH
Confidence 46899998888888889999999988764 2345566665544
No 6
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=80.28 E-value=2 Score=26.49 Aligned_cols=64 Identities=22% Similarity=0.174 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCccccCCCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhhccc
Q 047575 15 GLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKV 82 (176)
Q Consensus 15 ~~HNH~~~~~~~~h~~~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r~ 82 (176)
..++|++..+........+|++.+++.+.. ...|.+.++|-+.|.-.. ......+.+.+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~l-~~~g~s~~eIA~~l~is~---~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 3 GSHHHHHHGSATTERDVNQLTPRERDILKL-IAQGLPNKMIARRLDITE---STVKVHVKHMLKKMKL 66 (82)
T ss_dssp --------------CCGGGSCHHHHHHHHH-HTTTCCHHHHHHHHTSCH---HHHHHHHHHHHHHTTC
T ss_pred CccCCCCCCchHHHHHHccCCHHHHHHHHH-HHcCCCHHHHHHHHCcCH---HHHHHHHHHHHHHHcC
Confidence 356666655444444557899999876666 478999999999985321 1123344455555543
No 7
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=77.27 E-value=12 Score=26.94 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=39.2
Q ss_pred cEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCC
Q 047575 103 NVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKREL 174 (176)
Q Consensus 103 dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~ 174 (176)
+++.+|.|+..++ +.++.+|...+-. .+. .+.+++.+...-++..+.... + |++|.+|+..
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~-~~~~~~~~~~~~~l~~~~~~~--g--p~~i~sDnG~ 121 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAE-RVKGETGQEFRVQTMKWYAMF--A--PKSLQSDNGP 121 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEE-EESCCCHHHHHHHHHHHHHHH--C--CCEEEECCCH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEE-EeCCCCHHHHHHHHHHHHHHh--C--CcEEEeCCCc
Confidence 7888999976544 4456667666644 344 456666666655555433333 3 9999999864
No 8
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=72.77 E-value=17 Score=24.53 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=40.1
Q ss_pred CcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCC
Q 047575 102 TNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKREL 174 (176)
Q Consensus 102 ~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~ 174 (176)
.+++.+|.||..++ +.++.+|...+-. .++ .+.+++.+...-++..+...++ |++|.+|+..
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~-~~~~~~~~~~~~~l~~~~~~~~----~~~i~sD~G~ 70 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAE-VIPAETGQETAYFLLKLAGRWP----VKTVHTDNGS 70 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEE-EESSCCHHHHHHHHHHHHHHSC----CCEEEECCCG
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEE-EeCCCcHHHHHHHHHHHHHHcC----CcEEeecChH
Confidence 46889999997653 3566677766643 444 3466666666666555444332 4899999865
No 9
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=72.51 E-value=20 Score=24.35 Aligned_cols=67 Identities=10% Similarity=-0.066 Sum_probs=41.0
Q ss_pred CcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCC
Q 047575 102 TNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKREL 174 (176)
Q Consensus 102 ~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~ 174 (176)
.+++.+|.||-....+. .+.++.+|...+-. +++.+ .+++.+...-+|+...... ..|++|.+|+..
T Consensus 11 ~~~~~~D~~~~~~~~g~-~yl~~~iD~~Sr~i-~~~~~-~~~~~~~v~~~l~~~~~~~---g~p~~i~sDnG~ 77 (162)
T 1cxq_A 11 LQIWQTDFTLEPRMAPR-SWLAVTVDTASSAI-VVTQH-GRVTSVAAQHHWATAIAVL---GRPKAIKTDNGS 77 (162)
T ss_dssp CCEEEEEEEECGGGTTS-CEEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHH---CCCSEEECCSCH
T ss_pred CCEEEeeeeecccCCCC-EEEEEEEEcCCCeE-EEEEC-CCccHHHHHHHHHHHHHHH---CCCeEEEeCCch
Confidence 36889999986544333 44567777776654 45544 4555555544444443333 358899999863
No 10
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=71.55 E-value=26 Score=25.65 Aligned_cols=67 Identities=10% Similarity=-0.067 Sum_probs=42.2
Q ss_pred CcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCC
Q 047575 102 TNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKREL 174 (176)
Q Consensus 102 ~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~ 174 (176)
.+++.+|.||.....+. .+.++.+|...+- .+++.+ .+++.+...-+|+......+ .|++|.+|+..
T Consensus 10 ~~~w~~D~~~~~~~~g~-~yl~~~iD~~Sr~-i~~~~~-~~~~~~~v~~~l~~~~~~~g---~p~~i~sDnG~ 76 (238)
T 1c0m_A 10 LQIWQTDFTLEPRMAPR-SWLAVTVDTASSA-IVVTQH-GRVTSVAVQHHWATAIAVLG---RPKAIKTDNGS 76 (238)
T ss_dssp TSEEEEEEEECGGGCSS-CEEEEEEETTTCC-EEEEEE-SSCCHHHHHHHHHHHHHHHC---CCSEEEECSCH
T ss_pred CCEEEEeeccccccCCC-EEEEEEEECCCCC-EEEEEc-cCCCHHHHHHHHHHHHHHhC---CCcEEEECCCC
Confidence 36889999986543333 4556667766654 446654 46666666555555444443 48999999864
No 11
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=68.00 E-value=6.5 Score=27.02 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCccccCCCCCHHHHHhhhhhccCCCChhHHHHHhhhcCC
Q 047575 16 LHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDT 64 (176)
Q Consensus 16 ~HNH~~~~~~~~h~~~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~ 64 (176)
.|.|.+......|. .=||++|+..|..|.+.|-+..+|+..+-.-+.
T Consensus 5 ~~~~~le~~~~~~L--sWLt~eQk~EI~kMk~~gksk~~v~~KI~efye 51 (134)
T 2xv9_A 5 FHHFTLESSLDTHL--KWLSQEQKDELLKMKKDGKAKKELEAKILHYYD 51 (134)
T ss_dssp TSSSCSGGGTTTTT--TTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHH--HHCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45566554333333 468999999999999999989888887765543
No 12
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=67.47 E-value=28 Score=27.00 Aligned_cols=71 Identities=11% Similarity=-0.100 Sum_probs=46.1
Q ss_pred CCcEEEEeccccccc----cCc--ceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCe--EEEecC
Q 047575 101 FTNVLIMDCTYKVNK----YKF--PLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPS--VIVIKR 172 (176)
Q Consensus 101 f~dvv~~D~ty~tn~----~~~--pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~--~iitD~ 172 (176)
-++++.+|.|+-.-. -+. .....+.+|...+ .++|+.+...|+.++..-+|.......+ .|. .|.+|+
T Consensus 15 p~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G---~P~~~~i~sDn 90 (327)
T 1bco_A 15 AMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG---IPEDFHITIDN 90 (327)
T ss_dssp TTTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC---EESSCEEECCC
T ss_pred CCcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC---CCCCcEEEeeC
Confidence 357899999874221 121 2344666776665 4578888888877777666665544433 688 999998
Q ss_pred CCC
Q 047575 173 ELT 175 (176)
Q Consensus 173 d~a 175 (176)
-..
T Consensus 91 G~~ 93 (327)
T 1bco_A 91 TRG 93 (327)
T ss_dssp TTS
T ss_pred chh
Confidence 643
No 13
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=65.91 E-value=8 Score=25.10 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=33.3
Q ss_pred ChHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHh
Q 047575 91 YPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIM 159 (176)
Q Consensus 91 ~~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~ 159 (176)
.....++|..|++|..++... + +||||.-++.+.-.-+++.+....
T Consensus 30 ~~~l~~~F~~~G~v~~~~i~~---------------~--------g~afV~f~~~~~a~~Ai~~l~g~~ 75 (115)
T 3beg_B 30 WQDLKDHMREAGDVCYADVYR---------------D--------GTGVVEFVRKEDMTYAVRKLDNTK 75 (115)
T ss_dssp TTHHHHHHGGGSCEEEEEECT---------------T--------SEEEEEESSHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHhcCCeEEEEEec---------------C--------CEEEEEECCHHHHHHHHHHhCCCE
Confidence 345677899999987654221 1 789999999999888887765544
No 14
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=65.70 E-value=1.8 Score=27.74 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=29.4
Q ss_pred CCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCc
Q 047575 33 RLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFS 66 (176)
Q Consensus 33 ~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~ 66 (176)
.+..+++..|.++.+.|-+..+|+.+|..++|+.
T Consensus 40 ~iA~dlR~~Vre~l~~G~Sd~eI~~~mv~RYGdf 73 (90)
T 2kw0_A 40 MIATDLRQKVYELMQEGKSKKEIVDYMVARYGNF 73 (90)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCe
Confidence 4556778899999999999999999999999874
No 15
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=64.45 E-value=26 Score=24.95 Aligned_cols=62 Identities=16% Similarity=0.097 Sum_probs=38.2
Q ss_pred cEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCCC
Q 047575 103 NVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELT 175 (176)
Q Consensus 103 dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~a 175 (176)
.++.+|.|+..++| .++.+|...+ +..+. .+.+++.+...-++. ++... ..|++|.+|+...
T Consensus 60 ~~w~~D~~~~~~~y-----~l~~vD~~sr-~~~~~-~~~~~~~~~~~~~l~---~~~~~-~g~~~i~sDnG~~ 121 (210)
T 3f9k_A 60 GTWQMDCTHLEGKI-----IIVAVHVASG-FIEAE-VIPQESGRQTALFLL---KLASR-WPITHLHTDNGAN 121 (210)
T ss_dssp TEEEEEEEEETTEE-----EEEEEETTTT-EEEEE-EESSCCHHHHHHHHH---HHHTT-SCCSEEEECCCTT
T ss_pred CeEeEeecccCCeE-----EEEEEEcCCC-cEEEE-EeCCcchHHHHHHHH---HHHHH-cCCCEEEeCCCch
Confidence 57889998876543 4666677666 34444 556666666654444 34431 2245699999764
No 16
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=62.70 E-value=2.1 Score=27.06 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=29.6
Q ss_pred CCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCc
Q 047575 33 RLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFS 66 (176)
Q Consensus 33 ~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~ 66 (176)
.+..+++..|.++.+.|-+..+|+.+|..++|+.
T Consensus 43 ~iA~dlR~~V~~~l~~G~sd~eI~~~~v~RYG~f 76 (84)
T 2hl7_A 43 PIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDF 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCe
Confidence 4556778899999999999999999999999874
No 17
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=61.13 E-value=33 Score=22.79 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=36.4
Q ss_pred CcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCCC
Q 047575 102 TNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELT 175 (176)
Q Consensus 102 ~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~a 175 (176)
.+++.+|.++-.++ +.++.+|...+- .+++ .+.+++.+... ..+.+.... ..|++|.+|+...
T Consensus 9 ~~~w~~D~~~~~g~-----~~l~~iD~~Sr~-~~~~-~~~~~~~~~~~---~~~~~~~~~-~~~~~i~sDnG~~ 71 (164)
T 1c6v_A 9 LGTWQMDCTHLEGK-----IVIVAVHVASGF-IEAE-VIPQETGRQTA---LFLLKLAGR-WPITHLHTDNGAN 71 (164)
T ss_dssp TTEEEEEEEEETTE-----EEEEEECTTSCC-EEEE-ECSSCSHHHHH---HHHHHHHTT-SCCCEEECCCCSS
T ss_pred CCEEEEeecccCCE-----EEEEEEEccCCE-EEEE-EcCCCchHHHH---HHHHHHHHh-cCCCEEEeCCchh
Confidence 35788999887222 234447776663 4455 44555554444 333444432 2479999998754
No 18
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=59.95 E-value=17 Score=23.93 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=31.2
Q ss_pred CCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhhc
Q 047575 32 GRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKY 80 (176)
Q Consensus 32 r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~ 80 (176)
++++++++..|..+.+.|.+.++|...+. +....|+++..+.
T Consensus 5 ~~~s~~~r~~i~~~~~~G~s~~~ia~~lg-------is~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNVSLHEMSRKIS-------RSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHT-------CCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcCCCHHHHHHHHC-------cCHHHHHHHHHcc
Confidence 57899999999999899999999888763 2345555555443
No 19
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=56.50 E-value=28 Score=22.74 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCCccccCCCCCHHHHHhhhhhccC--CCChhHHHHHhhh-------cCCCccchHHHHHH
Q 047575 15 GLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKN--NVRPKEIFHTLKT-------RDTFSVTMMKAICN 75 (176)
Q Consensus 15 ~~HNH~~~~~~~~h~~~r~ls~~~~~~i~~l~~~--g~~~~~I~~~l~~-------~~~~~~~t~kdi~N 75 (176)
..|.|++.+..+..-..-++++.|++...+.... +.+..+++..+|+ .+|...+|..++..
T Consensus 6 ~~~~~~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~ 75 (104)
T 2fq3_A 6 HHHHHGMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARR 75 (104)
T ss_dssp -----------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHH
T ss_pred ccccCCCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHH
Confidence 3567888876555555678999999988887654 3444444444443 34655666666543
No 20
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.67 E-value=8.3 Score=24.60 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=28.8
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLK 156 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~ 156 (176)
....+|..|++|..+.--. + +||||.-++.++-.-+++.+.
T Consensus 31 ~l~~~F~~~G~i~~~~i~~---------------~--------g~afV~f~~~~~a~~Ai~~l~ 71 (108)
T 1x4c_A 31 DLKDHMREAGDVCYADVYR---------------D--------GTGVVEFVRKEDMTYAVRKLD 71 (108)
T ss_dssp HHHHHHGGGSCEEEEEEET---------------T--------TEEEEEESSHHHHHHHHHHSS
T ss_pred HHHHHHHhcCCEeEEEEec---------------C--------CEEEEEECCHHHHHHHHHHHC
Confidence 4556888899886553211 1 789999999888887776543
No 21
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=54.26 E-value=52 Score=22.89 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=40.2
Q ss_pred CcEEEEec-cccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCC
Q 047575 102 TNVLIMDC-TYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKREL 174 (176)
Q Consensus 102 ~dvv~~D~-ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~ 174 (176)
.+++.+|. ++.....| ..+.++.+|...+- .+++.+ .+.+.+.. ++.+..+.. ...|++|.+|+..
T Consensus 13 ~~~~~~D~~~~~~~~~g-~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~---~~~l~~~~~-~g~p~~i~sDnG~ 79 (200)
T 2x78_A 13 FDKFFIDYIGPLPPSQG-YLYVLVVVDGMTGF-TWLYPT-KAPSTSAT---VKSLNVLTS-IAIPRVIHSDQGA 79 (200)
T ss_dssp TSEEEEEEECCCSCBTT-BCEEEEEEETTTCC-EEEEEE-SSSCHHHH---HHHHHHHTT-TCCCSEEEECSCH
T ss_pred ccEEEEEEeCCCccCCC-CeEEEEEEeCCCCc-EEEEEC-CCCCHHHH---HHHHHHHHH-hCCCcEEEecCCc
Confidence 36888997 55433333 45556777776654 445554 55555543 445555554 3679999999863
No 22
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=54.20 E-value=17 Score=23.29 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=33.0
Q ss_pred CCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhhcc
Q 047575 32 GRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYK 81 (176)
Q Consensus 32 r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r 81 (176)
++++.+++..|..+.+.|.+.++|...+. +....|+++..+++
T Consensus 16 ~~~s~~~r~~i~~~~~~g~s~~~ia~~lg-------is~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAADGIRPCVISRQLR-------VSHGCVSKILNRYQ 58 (128)
T ss_dssp SCCCHHHHHHHHHHHHTTCCHHHHHHHHT-------CCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHcCCCHHHHHHHHC-------cCHHHHHHHHHHHH
Confidence 57899999999998889999998887764 34566777766544
No 23
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=54.06 E-value=33 Score=25.58 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=52.4
Q ss_pred CCCHHHHHhhhhhccCCCChhHHHHHhhhcC----CCccchHHHHHHHHhhccc------------cccceEEeChHhHH
Q 047575 33 RLTNEEVSTLVDLSKNNVRPKEIFHTLKTRD----TFSVTMMKAICNARYKYKV------------CELDIFWAYPLTFE 96 (176)
Q Consensus 33 ~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~----~~~~~t~kdi~N~~~k~r~------------~i~~if~~~~~~~~ 96 (176)
.+++++++.+..+.+..+.+.++-.+|.+-. |-.++|.++|.....+.++ .+.-+-|.|+.+.+
T Consensus 59 ~~~~eq~~lL~~i~~~~lt~~~~e~~L~~Lk~yV~pm~~lTe~qIrk~F~kaKkLklPdl~~~dw~~l~yLGW~D~~~~R 138 (222)
T 4adn_A 59 HIDDDIEESLKVLMNIRLSNKEIEAILNKFLEYVVPFELPSPQKLQKVFKKVKKIKIPQFEEYDLKVSSFVGWNELASNR 138 (222)
T ss_dssp SCCHHHHHHHHHHTSTTCCHHHHHHHHHHHHTTBCCCCCCCHHHHHHHTTTSTTCCCCCCCHHHHHTCSEEEEEEGGGTE
T ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhhhhhccCCCCcccCCcccCceEeeecCCCCc
Confidence 6788998888889888888988888887643 4456789999988887666 45668899999855
Q ss_pred HHH
Q 047575 97 LLK 99 (176)
Q Consensus 97 ~~~ 99 (176)
.|-
T Consensus 139 ~Yl 141 (222)
T 4adn_A 139 KYI 141 (222)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=53.55 E-value=36 Score=21.22 Aligned_cols=49 Identities=8% Similarity=0.085 Sum_probs=32.3
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLK 156 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~ 156 (176)
...+++|..||+|..+.-. .+ ...+..-|||||.=++.++-.-+++.+.
T Consensus 34 ~~L~~~F~~~G~I~~v~i~---------------~d-~~tg~~kG~afV~f~~~~~A~~Ai~~ln 82 (99)
T 4fxv_A 34 DELRSLFSSIGEVESAKLI---------------RD-KVAGHSLGYGFVNYVTAKDAERAINTLN 82 (99)
T ss_dssp HHHHHHHHTTSCEEEEEEE---------------EC-SSSCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCEEEeEee---------------ec-CCCCcccccEEEEECCHHHHHHHHHHhC
Confidence 3456688899998654321 11 1122346899999999998888877664
No 25
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=52.06 E-value=13 Score=21.03 Aligned_cols=48 Identities=8% Similarity=-0.117 Sum_probs=28.9
Q ss_pred CCCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhhcc
Q 047575 31 AGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYK 81 (176)
Q Consensus 31 ~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r 81 (176)
.++.|++.|..+..+.+.|.++..-...+..+++ +....|++.+.+.+
T Consensus 3 r~~ys~efK~~~~~~~~~g~s~~~~~~~vA~~~g---Is~~tl~~W~~~~~ 50 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRNDNDCKGNQRATARKYN---IHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTTTTCHHHHHHHTT---SCHHHHHHHHTTHH
T ss_pred CCcCCHHHHHHHHHHHHcCCCcchHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 3678999998887777777762222233334444 24566777765543
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=50.76 E-value=25 Score=22.53 Aligned_cols=51 Identities=10% Similarity=0.282 Sum_probs=34.4
Q ss_pred ChHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHh
Q 047575 91 YPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIM 159 (176)
Q Consensus 91 ~~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~ 159 (176)
....+++|..||.|..+.-- .+ .+. .-|||||.=++.++-.-+++.+....
T Consensus 19 e~~L~~~F~~~G~v~~v~i~---------------~d-~~~--~kg~afV~f~~~~~A~~Ai~~l~~~~ 69 (115)
T 4f25_A 19 NKALYDTFSAFGNILSCKVV---------------CD-ENG--SKGYGFVHFETQEAAERAIEKMNGML 69 (115)
T ss_dssp HHHHHHHHGGGSCEEEEEEE---------------EE-TTE--EEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhccCCEEEEEEe---------------ec-CCC--CCceEEEEECCHHHHHHHHHHcCCCE
Confidence 34566789999998654211 11 122 35899999999999998887765443
No 27
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=50.02 E-value=21 Score=24.04 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=33.6
Q ss_pred CCCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhhcc
Q 047575 31 AGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYK 81 (176)
Q Consensus 31 ~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r 81 (176)
.++++.+++..|..+.+.|.+.++|...+. +....|+++..+++
T Consensus 30 ~~~~s~e~r~~iv~~~~~G~s~~~iA~~lg-------is~~TV~rw~~~~~ 73 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAHQGVRPCDISRQLR-------VSHGCVSKILGRYY 73 (149)
T ss_dssp TSCCCHHHHHHHHHHHHTTCCHHHHHHHHT-------CCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHC-------cCHHHHHHHHHHHH
Confidence 467999999999998889999999888763 34566777666544
No 28
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=48.33 E-value=27 Score=21.71 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=22.4
Q ss_pred CCCCCHHHHHhhhhhccCCCChhHHHHHhh
Q 047575 31 AGRLTNEEVSTLVDLSKNNVRPKEIFHTLK 60 (176)
Q Consensus 31 ~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~ 60 (176)
...||+.+++.+..+. .|.+.++|-..|.
T Consensus 27 ~~~Lt~rE~~Vl~l~~-~G~s~~eIA~~L~ 55 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-KGFTNQEIADALH 55 (90)
T ss_dssp --CCCHHHHHHHHHHH-TTCCHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH-cCCCHHHHHHHHC
Confidence 3579999977666555 9999999999885
No 29
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=47.68 E-value=27 Score=22.74 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=36.5
Q ss_pred CCCCCHHHHHhhhh-hccC-CCChhHHHHHhhhcCCCccchHHHHHHHHhhcc
Q 047575 31 AGRLTNEEVSTLVD-LSKN-NVRPKEIFHTLKTRDTFSVTMMKAICNARYKYK 81 (176)
Q Consensus 31 ~r~ls~~~~~~i~~-l~~~-g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r 81 (176)
.|+||+++..+|.. |.+. .+.+-+|...+.+-.. ...+..||...+.++.
T Consensus 36 ~r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~-~~Ps~eDI~RV~arLa 87 (103)
T 2kvc_A 36 CRRLSHDEVKAVANELMRLGDFDQIDIGVVITHFTD-ELPSPEDVERVRARLA 87 (103)
T ss_dssp TTTSCHHHHHHHHHHHHHHTSSCSSCHHHHHHSCCS-SCSCHHHHHHHHHHHG
T ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 48999999755554 5444 4888899998887554 4567889988877654
No 30
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=47.54 E-value=62 Score=22.33 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=35.6
Q ss_pred CcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCC
Q 047575 102 TNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRE 173 (176)
Q Consensus 102 ~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d 173 (176)
.+++.+|.++..++| + ++.+|...+-. +++ .+.+++.....-++..+...+ .+++|.+|+.
T Consensus 29 ~~~w~~D~~~~~g~~---~--l~~vD~~Sr~~-~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~i~sDnG 89 (183)
T 3av9_A 29 PGIWQLDCTHLEGKV---I--LVAVHVASGYI-EAE-VIPAETGQETAYFLLKLAGRW----PVKTVHTDNG 89 (183)
T ss_dssp TTEEEEEEEEETTEE---E--EEEEETTTTEE-EEE-EESSCCHHHHHHHHHHHHHHS----CCCEEECSSH
T ss_pred CCEEEEeccccCCcE---E--EEEEECCCCCE-EEE-EeCCccchHHHHHHHHHHHHc----CCcEEEecCc
Confidence 478899999873332 3 44556666544 555 455665555544443333222 2489999975
No 31
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=46.66 E-value=33 Score=21.82 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=23.0
Q ss_pred CCCCCHHHHHhhhhhccCCCChhHHHHHhh
Q 047575 31 AGRLTNEEVSTLVDLSKNNVRPKEIFHTLK 60 (176)
Q Consensus 31 ~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~ 60 (176)
..+|++.+++.+.. ...|.+.++|-..|.
T Consensus 32 ~~~Lt~re~~Vl~l-~~~G~s~~EIA~~L~ 60 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-FAEGFLVTEIAKKLN 60 (99)
T ss_dssp SSSCCHHHHHHHHH-HHHTCCHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH-HHcCCCHHHHHHHHC
Confidence 46799999866654 558999999999885
No 32
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.14 E-value=11 Score=22.28 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=32.3
Q ss_pred cccCCCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCC
Q 047575 28 HSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTF 65 (176)
Q Consensus 28 h~~~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~ 65 (176)
.+.-+.|++.+.+-|..+...|+...+....|+...++
T Consensus 9 ~~~l~~ls~se~e~V~~LvsMGFs~~qA~kALKat~~N 46 (63)
T 1wgn_A 9 YSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGEN 46 (63)
T ss_dssp THHHHTCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCSC
T ss_pred hHHHHhhCcchHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 33347899999889999999999999999999987764
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=46.14 E-value=46 Score=21.22 Aligned_cols=62 Identities=6% Similarity=-0.022 Sum_probs=37.9
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEE
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIV 169 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~ii 169 (176)
...+++|..||.|.-+.--+ +. .....-|||||.=++.++-.-+++.+....-.++..+|-+
T Consensus 21 ~~L~~~F~~~G~i~~v~i~~---------------d~-~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 21 TFLKDMCRKYGEVEEVEILL---------------HP-RTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp HHHHHHHTTTSCEEEEEEEE---------------CT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHHHHHHHhcCCeeEEEEEE---------------CC-CCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34566889999986543211 11 1123468999999999998888876654332234444433
No 34
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=44.93 E-value=11 Score=19.97 Aligned_cols=41 Identities=5% Similarity=0.010 Sum_probs=27.4
Q ss_pred CCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhh
Q 047575 32 GRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYK 79 (176)
Q Consensus 32 r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k 79 (176)
++++++++..+..+.+.|.+..+|...+. +....||++..+
T Consensus 4 ~~~~~~~~~~i~~l~~~g~s~~~ia~~lg-------vs~~Tv~r~l~~ 44 (52)
T 1jko_C 4 RAINKHEQEQISRLLEKGHPRQQLAIIFG-------IGVSTLYRYFPA 44 (52)
T ss_dssp CSSCTTHHHHHHHHHHTTCCHHHHHHTTS-------CCHHHHHHHSCT
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHC-------CCHHHHHHHHHH
Confidence 46777887888888778887777765542 345566666443
No 35
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=44.85 E-value=71 Score=23.14 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=36.1
Q ss_pred CcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCC
Q 047575 102 TNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKREL 174 (176)
Q Consensus 102 ~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~ 174 (176)
..++.+|.||-.++| .++.+|...+ +.+++ .+.+++.....-++..+.. . ..|++|.||+..
T Consensus 9 ~~~w~~D~t~~~g~~-----~l~~vD~~Sr-~i~~~-~~~~~~~~~~~~~~~~~~~--~--~~~~~i~sDnG~ 70 (239)
T 1ex4_A 9 PGIWQLDCTHLEGKV-----ILVAVHVASG-YIEAE-VIPAETGQETAYFLLKLAG--R--WPVKTIHTDNGS 70 (239)
T ss_dssp GGEEEEEEEEETTEE-----EEEEECTTTC-CEEEE-CCSSSSTTHHHHHHHHHHH--H--SCCCEEEECCCH
T ss_pred CCEEEEeccccCCeE-----EEEEEECCCC-eEEEE-EeCCCCHHHHHHHHHHHHH--h--cCCcEEEecCcH
Confidence 358899999983332 3445555544 44555 5556666555544433322 2 236999999863
No 36
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=43.54 E-value=52 Score=21.71 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=33.9
Q ss_pred CCCCCHHHHHhhh-hhccCC--------CChhHHHHHhhhcCCCccchHHHHHHHHhhc
Q 047575 31 AGRLTNEEVSTLV-DLSKNN--------VRPKEIFHTLKTRDTFSVTMMKAICNARYKY 80 (176)
Q Consensus 31 ~r~ls~~~~~~i~-~l~~~g--------~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~ 80 (176)
.|+||+++..+|. .|.+.| +...+|...+.+-.. ..++..||...+.++
T Consensus 38 ~R~LtdeEV~~Va~~L~~~~~~~~~~~~i~~~dI~v~It~VT~-e~P~peDI~RV~arL 95 (112)
T 2m0n_A 38 RRTLTEEQVQEVVAKLTDPESSAQIDGVVSKDEIEKFIADVTK-DEPTAQDISRVASRL 95 (112)
T ss_dssp CSSCCHHHHHHHHHHHTCTTTHHHHTSCCCTTHHHHHHHHTTT-CCCCHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHhc-cCcCHHHHHHHHHHH
Confidence 5889999875554 454443 555888888876544 356788988887765
No 37
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=42.61 E-value=26 Score=23.17 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=35.8
Q ss_pred CCCCCHHHHHhhhh-hccC-CCChhHHHHHhhhcCCCccchHHHHHHHHhhcc
Q 047575 31 AGRLTNEEVSTLVD-LSKN-NVRPKEIFHTLKTRDTFSVTMMKAICNARYKYK 81 (176)
Q Consensus 31 ~r~ls~~~~~~i~~-l~~~-g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r 81 (176)
.|+||+++..+|.. |.+. .+.+.+|...+.+-.. ...+..||...+.++.
T Consensus 38 ~r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~-~~Ps~eDI~RV~arLa 89 (112)
T 2lky_A 38 TRRLTNDEIKAIAEDLEKRAHFDHIDIGVLITQMTD-EMPREEDIERVRRHLA 89 (112)
T ss_dssp TTTCCHHHHHHHHHHHHHHCCCSCCCSHHHHHHHTT-CCCCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 48999999755554 5443 4888888888876554 3457889988877654
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=41.89 E-value=36 Score=20.55 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=22.3
Q ss_pred EEEEEeecCCccchHHHHHHHHHHHhcCCCCCeE
Q 047575 134 NVDFAYLESKREDNYIWALKRLKTIMQDDMLPSV 167 (176)
Q Consensus 134 ~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~ 167 (176)
.-||||+.=++.++-.-+++.+....-+++..+|
T Consensus 44 ~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V 77 (90)
T 3p5t_L 44 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 77 (90)
T ss_dssp EEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEE
T ss_pred cCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEE
Confidence 4589999999999988887766543322444333
No 39
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=40.53 E-value=20 Score=24.55 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=33.1
Q ss_pred CCCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhhcc
Q 047575 31 AGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYK 81 (176)
Q Consensus 31 ~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r 81 (176)
.++++.+++..|..+.+.|.+.++|...+. +....|+++.++++
T Consensus 23 ~~~~s~e~r~~ii~l~~~G~s~~~IA~~lg-------is~~TV~rwl~r~~ 66 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAHQGVRPCDISRQLR-------VSHGCVSKILGRYY 66 (159)
T ss_dssp SCSSCHHHHHHHHHHHHHTCCHHHHHHHHT-------CCSHHHHHHHCCSS
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHC-------cCHHHHHHHHHHHH
Confidence 367999999999988888999999888764 23456666666554
No 40
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=40.09 E-value=33 Score=20.96 Aligned_cols=44 Identities=5% Similarity=-0.053 Sum_probs=30.1
Q ss_pred CCCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhhcc
Q 047575 31 AGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYK 81 (176)
Q Consensus 31 ~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r 81 (176)
.++.+++.+..+..+.+.|.+..+|...+. +....||+++.+++
T Consensus 20 ~~~ys~e~k~~~v~~~~~g~s~~~iA~~~g-------Is~sTl~rW~k~~~ 63 (87)
T 2elh_A 20 LRSLTPRDKIHAIQRIHDGESKASVARDIG-------VPESTLRGWCKNED 63 (87)
T ss_dssp CSSCCHHHHHHHHHHHHHTCCHHHHHHHHT-------CCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHC-------cCHHHHHHHHHHHH
Confidence 357899998888777777888777766543 24556677765443
No 41
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.66 E-value=57 Score=19.76 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=33.6
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
...+++|..||+|..+.-.. .-+..|....-|||||.=++.++-.-+++.+..
T Consensus 20 ~~l~~~F~~~G~i~~v~i~~-------------~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g 72 (98)
T 2cpf_A 20 ETLKGVFSKVGAIKSCTISK-------------KKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG 72 (98)
T ss_dssp HHHHHHHHTTSCEEEEEEEE-------------EECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcCCeEEEEEEe-------------cCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC
Confidence 34566889999886543211 111223445678999999988887777665443
No 42
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=38.99 E-value=71 Score=20.06 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=20.2
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHh
Q 047575 133 FNVDFAYLESKREDNYIWALKRLKTIM 159 (176)
Q Consensus 133 ~~~~~~~~~~E~~~s~~w~l~~~~~~~ 159 (176)
..-|||||.=++.++-.-+++.+....
T Consensus 66 ~~~g~afV~F~~~~~A~~Ai~~l~g~~ 92 (108)
T 2jrs_A 66 RSKGYGFITFSDSECAKKALEQLNGFE 92 (108)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHTTCC
T ss_pred ccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 356899999999998887777655433
No 43
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=38.79 E-value=49 Score=20.62 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=30.8
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
..+.+|..||.|..+.-. ...| .+-|||||.=++.++-.-+++.+..
T Consensus 37 ~l~~~F~~~G~v~~v~i~----------------~~~g--~~~G~afV~f~~~~~A~~Ai~~l~g 83 (105)
T 2nlw_A 37 VIHKIFSKFGKITNDFYP----------------EEDG--KTKGYIFLEYASPAHAVDAVKNADG 83 (105)
T ss_dssp HHHHHHGGGSCEEEEECC----------------CBTT--BSCCEEEEEECSSSHHHHHHHHCSS
T ss_pred HHHHHHhcCCCEEEEEee----------------CCCC--CeeeEEEEEECCHHHHHHHHHHhCC
Confidence 356788999998765322 1112 2237889998988888777765433
No 44
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=38.75 E-value=32 Score=20.23 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=28.3
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKR 154 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~ 154 (176)
..+.+|..||+|..+.-- ...| .+-||||+.-++.++-.-+++.
T Consensus 23 ~l~~~F~~~G~i~~v~i~----------------~~~g--~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 23 VIHKIFSKFGKITNDFYP----------------EEDG--KTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp HHHHHHHTTCCEEEEECC----------------CBTT--BCCCEEEEEESSHHHHHHHHTT
T ss_pred HHHHHHhhcCCeEEEEec----------------CCCC--cEeEEEEEEECCHHHHHHHHHH
Confidence 456789999998765321 1112 2247889988888877666553
No 45
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=38.45 E-value=63 Score=19.26 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=32.0
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHh
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIM 159 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~ 159 (176)
..+.+|..||+|..+.-.. ..+ ..-|||||.=++.+.-.-+++.+....
T Consensus 24 ~l~~~f~~~G~v~~~~i~~----------------~~g--~~~g~afV~f~~~~~a~~a~~~l~g~~ 72 (92)
T 2dgv_A 24 MLKDKFNECGHVLYADIKM----------------ENG--KSKGCGVVKFESPEVAERACRMMNGMK 72 (92)
T ss_dssp HHHHHHHTTSCEEEEEEEE----------------SSS--CEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCEEEEEEEc----------------cCC--CcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 4566888999886543211 122 245889999988888887777655443
No 46
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Probab=38.14 E-value=1e+02 Score=21.60 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=36.7
Q ss_pred CCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCCC
Q 047575 101 FTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELT 175 (176)
Q Consensus 101 f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~a 175 (176)
-.+++.+|.++-.++| .++.+|...+-. +++ .+.+++.+...-++..+... ..|++|.+|+...
T Consensus 57 p~~~w~~D~~~~~~~~-----~l~~vD~~Sr~~-~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~i~sDnG~~ 120 (212)
T 1k6y_A 57 SPGIWQLDCTHLEGKV-----ILVAVHVASGYI-EAE-VIPAETGQETAYFLLKLAGR----WPVKTVHTDNGSN 120 (212)
T ss_dssp CTTEEEEEEEEETTEE-----EEEEEETTTTEE-EEE-EESSCCHHHHHHHHHHHHHH----SCCCEEECCCSTT
T ss_pred CCCeeeEEEecCCCeE-----EEEEEEccCCcE-EEE-EecCcchHHHHHHHHHHHHh----cCCeEEEcCCCcc
Confidence 3478899999873332 344556655543 343 45566555554443332222 2258999999764
No 47
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=36.78 E-value=75 Score=21.73 Aligned_cols=50 Identities=6% Similarity=0.038 Sum_probs=33.5
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCc-----cchHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKR-----EDNYIWALKRLKT 157 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~-----~~s~~w~l~~~~~ 157 (176)
..-+.+|..||+|.. +.-++.-..+.+.||||+.-.+ .+...-+.+.+.+
T Consensus 21 ~~Lk~~Fs~fGeV~~----------------~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~ 75 (136)
T 2j8a_A 21 ISIKNYFKKYGEISH----------------FEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRK 75 (136)
T ss_dssp HHHHHHHHTTSCCSE----------------EEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEE----------------EEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHH
Confidence 455678899998854 3334455566778999998885 5666666666664
No 48
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.40 E-value=37 Score=20.49 Aligned_cols=60 Identities=8% Similarity=0.044 Sum_probs=35.8
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeE
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSV 167 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~ 167 (176)
...+++|..|++|..+.--... .....-|||||.=++.++-.-+++.+....-.++..++
T Consensus 20 ~~l~~~f~~~G~v~~v~i~~~~----------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 79 (95)
T 2dnz_A 20 DMLRGIFEPFGKIDNIVLMKDS----------------DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 79 (95)
T ss_dssp HHHHHHHTTTSCEEEEEEECCS----------------SSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred HHHHHHHHhcCCEeEEEEeecC----------------CCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3456688899988654322111 11123478899999999888887766544323344343
No 49
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=35.58 E-value=54 Score=21.84 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=35.4
Q ss_pred CCCCCHHHHHhhhhhcc--CCCChhHHHHHhhhcCC---CccchHHHHHHHHhhc
Q 047575 31 AGRLTNEEVSTLVDLSK--NNVRPKEIFHTLKTRDT---FSVTMMKAICNARYKY 80 (176)
Q Consensus 31 ~r~ls~~~~~~i~~l~~--~g~~~~~I~~~l~~~~~---~~~~t~kdi~N~~~k~ 80 (176)
.++++++.++.|..+.+ .+..+.+|...|.+... +..+....|+++..+.
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 45789888888888753 46888999998876541 3345677788876654
No 50
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=35.22 E-value=54 Score=20.63 Aligned_cols=45 Identities=13% Similarity=-0.019 Sum_probs=32.6
Q ss_pred ChHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 91 YPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 91 ~~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
...-+++|.+||+|..+.-- . +=||||++-.+.+.-.-+++.+..
T Consensus 21 e~~L~~lF~q~G~V~~~~l~----------------~------~kGfaFVey~~~~eA~~Ai~~Ln~ 65 (89)
T 2wbr_A 21 GPTLRTLCMQHGPLVSFHPY----------------L------NQGIALCKYTTREEANKAQMALNN 65 (89)
T ss_dssp CHHHHHHHHHHSCEEEEEEE----------------T------TTTEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCEEEEEEc----------------C------CCcEEEEEECCHHHHHHHHHHhcC
Confidence 34567899999999876421 0 138999999998888877775543
No 51
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.88 E-value=58 Score=20.57 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=28.6
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKR 154 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~ 154 (176)
..+.+|.+||+|.-+.-. + ..-|||||.=++.++-.-+++.
T Consensus 33 ~L~~~F~~~G~V~~v~i~--------------~-------~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 33 VLLRLLQKYGEVLNLVLS--------------S-------KKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp HHHHHHHTTSCEEEEEEE--------------S-------SSSSEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHhcCCEEEEEEc--------------c-------CCCCEEEEEECCHHHHHHHHHh
Confidence 456689999998755311 1 1237899999998887777765
No 52
>1mus_A TN5 transposase; hairpin, DNA binding, transcription/DNA complex; HET: DNA; 1.90A {Escherichia coli} SCOP: c.55.3.4 PDB: 1mur_A* 4dm0_A* 1mm8_A 1muh_A* 3ecp_A* 1b7e_A*
Probab=33.79 E-value=2e+02 Score=23.82 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=34.4
Q ss_pred ccCcceeEEEeecc-CCCeEEEEEEeec--------CCccchHHHHHHHHHHH---hcCCCC-CeEEEecCCCC
Q 047575 115 KYKFPLLEIVGVTL-TTMTFNVDFAYLE--------SKREDNYIWALKRLKTI---MQDDML-PSVIVIKRELT 175 (176)
Q Consensus 115 ~~~~pl~~~~g~~~-~~~~~~~~~~~~~--------~E~~~s~~w~l~~~~~~---~~~~~~-p~~iitD~d~a 175 (176)
..|+.+-..+.++. .|.+.-+.-.-+. -|..||+.|+=. +... .. ... ..+.|.|++..
T Consensus 121 ~~G~~lHstLavtp~~g~pLGl~~~~~W~R~~~~~pieeKES~rWle~-~~~~~~~~~-~~~~rvV~V~DRE~D 192 (477)
T 1mus_A 121 SRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAA-AATSRLRMG-SMMSNVIAVCDREAD 192 (477)
T ss_dssp CEEEEEEEEEEEETTTCCEEEEEEEEEECCCSSGGGCSSCGGGHHHHH-HHHHHHHHG-GGGGGEEEEECGGGC
T ss_pred ccceEEEEEEEEcCCCCceeeeeeeeEeecccccCCcccchhHHHHHH-HHHHHHhcC-CCcceEEEEechhhh
Confidence 35788888888887 6554332222221 366899998643 3332 22 122 45689999753
No 53
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=33.57 E-value=66 Score=18.04 Aligned_cols=29 Identities=10% Similarity=0.011 Sum_probs=22.8
Q ss_pred CCCCHHHHHhhhhhccCCCChhHHHHHhh
Q 047575 32 GRLTNEEVSTLVDLSKNNVRPKEIFHTLK 60 (176)
Q Consensus 32 r~ls~~~~~~i~~l~~~g~~~~~I~~~l~ 60 (176)
.+|++.++..+....-.|.+..+|-..+.
T Consensus 14 ~~L~~~~r~il~l~~~~g~s~~eIA~~lg 42 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLGLSYADAAAVCG 42 (70)
T ss_dssp TSSCHHHHHHHHHHHTSCCCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 57888887766665678999999998874
No 54
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=33.38 E-value=32 Score=22.85 Aligned_cols=32 Identities=6% Similarity=0.127 Sum_probs=28.1
Q ss_pred CCCHHHHHhhhhhccCCCChhHHHHHhhhcCC
Q 047575 33 RLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDT 64 (176)
Q Consensus 33 ~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~ 64 (176)
-|++++++.+..|...|.+...+...|+....
T Consensus 3 ~l~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~ 34 (118)
T 4ae4_A 3 HMSPSERQCVETVVNMGYSYECVLRAMKAAGA 34 (118)
T ss_dssp CSCHHHHHHHHHHHHTTCCHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCc
Confidence 47999999999999999999999999987543
No 55
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.93 E-value=41 Score=20.56 Aligned_cols=33 Identities=15% Similarity=0.006 Sum_probs=21.8
Q ss_pred EEEeecCCccchHHHHHHHHHHHhcCCCCCeEE
Q 047575 136 DFAYLESKREDNYIWALKRLKTIMQDDMLPSVI 168 (176)
Q Consensus 136 ~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~i 168 (176)
|||||.=++.++-.-+++.+....-.++..++=
T Consensus 57 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 57 RRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred cEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 688999999888888777665443234444443
No 56
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=32.92 E-value=29 Score=18.91 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=22.9
Q ss_pred CHHHHHhhhhhccCCCChhHHHHHhhhcCC
Q 047575 35 TNEEVSTLVDLSKNNVRPKEIFHTLKTRDT 64 (176)
Q Consensus 35 s~~~~~~i~~l~~~g~~~~~I~~~l~~~~~ 64 (176)
|+++.+.|..|...|++..+.++.|.....
T Consensus 1 ~~~e~eaI~rL~~mGF~~~~a~~Al~a~~~ 30 (47)
T 1dv0_A 1 GSQEKEAIERLKALGFPESLVIQAYFACEK 30 (47)
T ss_dssp --CCHHHHTTTTTTTCCHHHHHHHHTTTTS
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 356667788999999999999998876543
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=32.09 E-value=75 Score=19.91 Aligned_cols=51 Identities=4% Similarity=-0.060 Sum_probs=32.5
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
...+.+|..||.|.-+.--. + ......-|||||.=++.+.-.-+++.+...
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~---------------~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (115)
T 2dgo_A 30 EDIKAAFAPFGRISDARVVK---------------D-MATGKSKGYGFVSFFNKWDAENAIQQMGGQ 80 (115)
T ss_dssp HHHHHHHGGGSCEEEEEEEE---------------C-TTTCCEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCCeEEEEEEE---------------c-CCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 34566888999886543211 1 112234589999999998888777765443
No 58
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=32.06 E-value=27 Score=22.64 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=17.0
Q ss_pred EEEeecCCccchHHHHHHHHHH
Q 047575 136 DFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 136 ~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
|||||.=++.+.-.-+++.+-.
T Consensus 68 GfaFV~F~~~e~A~~Ai~~lng 89 (111)
T 2jvr_A 68 GTGALEFPSEEILVEALERLNN 89 (111)
T ss_dssp CCEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEEECCHHHHHHHHHHcCC
Confidence 6889999988888877766543
No 59
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=31.94 E-value=79 Score=18.48 Aligned_cols=51 Identities=4% Similarity=-0.030 Sum_probs=32.5
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
...+.+|..||.|.-+.-.. + ......-|||||.=++.++-.-+++.+...
T Consensus 21 ~~l~~~F~~~G~i~~v~i~~---------------~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (87)
T 3bs9_A 21 AAIAAAFAPFGRISDARVVK---------------D-MATGKSKGYGFVSFFNKWDAENAIQQMGGQ 71 (87)
T ss_dssp HHHHHHHGGGSCEEEEEEEE---------------C-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCEeEEEEEe---------------c-CCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 34566888899876543211 1 112234688999999988888777766543
No 60
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=31.80 E-value=27 Score=21.09 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=27.3
Q ss_pred cCCCCCHHHH---Hhhhhhc-cCCCChhHHHHHhhhcCC
Q 047575 30 FAGRLTNEEV---STLVDLS-KNNVRPKEIFHTLKTRDT 64 (176)
Q Consensus 30 ~~r~ls~~~~---~~i~~l~-~~g~~~~~I~~~l~~~~~ 64 (176)
.+|.-++++. ..|..|. +.|++..+|...|....+
T Consensus 41 g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~~~~ 79 (81)
T 2jml_A 41 NYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTEPP 79 (81)
T ss_dssp SSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHSCC
T ss_pred CeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHccCC
Confidence 4577788776 4566788 899999999999987654
No 61
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=31.61 E-value=51 Score=18.95 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=26.8
Q ss_pred CCCCHHHHHhhhhhccCCCChhHHHHHhhhc
Q 047575 32 GRLTNEEVSTLVDLSKNNVRPKEIFHTLKTR 62 (176)
Q Consensus 32 r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~ 62 (176)
..+..+-...|....+.|++..+|.++|.-.
T Consensus 9 ~~~d~ewl~LI~~Ak~lGlsleEIrefL~l~ 39 (57)
T 1b0n_B 9 FELDQEWVELMVEAKEANISPEEIRKYLLLN 39 (57)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4677788899999999999999999998754
No 62
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=31.25 E-value=93 Score=19.07 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=32.4
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHh
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIM 159 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~ 159 (176)
....+|..||.|.-+.-. .+ ......-|||||.=++.+.-.-+++.+....
T Consensus 39 ~l~~~f~~~G~i~~v~i~---------------~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 89 (106)
T 1p27_B 39 DIHDKFAEYGEIKNIHLN---------------LD-RRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 89 (106)
T ss_dssp HHHHHHGGGSCEEEEEEE---------------EC-TTTSSEEEEEEEEESCHHHHHHHHHHHTTCB
T ss_pred HHHHHHhccCCeEEEEEE---------------ec-CCCCceeeEEEEEECCHHHHHHHHHHhcCCE
Confidence 455688889988654311 11 1112345889999999888887777665443
No 63
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=31.25 E-value=50 Score=22.37 Aligned_cols=52 Identities=15% Similarity=0.029 Sum_probs=36.4
Q ss_pred CCCCCHHHHHhhhhhcc--CCCChhHHHHHhhhcCC---CccchHHHHHHHHhhccc
Q 047575 31 AGRLTNEEVSTLVDLSK--NNVRPKEIFHTLKTRDT---FSVTMMKAICNARYKYKV 82 (176)
Q Consensus 31 ~r~ls~~~~~~i~~l~~--~g~~~~~I~~~l~~~~~---~~~~t~kdi~N~~~k~r~ 82 (176)
.++++++.++.|..+.+ .+..+.+|...|.+... +..+....|+++..+.+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 35788888888887643 46889999998875431 234567788888776554
No 64
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=31.08 E-value=76 Score=19.51 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=33.4
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHh
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIM 159 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~ 159 (176)
..+++|..||.|.-+.--+ +. ..+.+-||||+.-++.++-.-+++.+....
T Consensus 28 ~L~~~F~~~G~i~~v~i~~---------------d~-~tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 28 ALTSLFSKAGKVVNMEFPI---------------DE-ATGKTKGFLFVECGSMNDAKKIIKSFHGKR 78 (100)
T ss_dssp HHHHHHHTTSCEEEEECCE---------------ET-TTTEECSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred HHHHHHHhcCCEeEEEEEE---------------cC-CCCccceEEEEEECCHHHHHHHHHHhCCcc
Confidence 3456889999987543211 11 112345899999999999888887665443
No 65
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=31.01 E-value=37 Score=17.26 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=21.5
Q ss_pred HHHhhhhhccCCCChhHHHHHhhhcCCC
Q 047575 38 EVSTLVDLSKNNVRPKEIFHTLKTRDTF 65 (176)
Q Consensus 38 ~~~~i~~l~~~g~~~~~I~~~l~~~~~~ 65 (176)
..+.|..|.+.|++..+....|+..+++
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n 31 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGD 31 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 3456777888899999999999876543
No 66
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.82 E-value=60 Score=19.92 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=30.9
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
..+++|..||.|.-+.-....+ + .-+||||.=++.+.-.-+++.+...
T Consensus 31 ~l~~~f~~~G~v~~v~i~~~~~---------------~---~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cq3_A 31 DLRQMFGQFGKILDVEIIFNER---------------G---SKGFGFVTFENSADADRAREKLHGT 78 (103)
T ss_dssp HHHHHGGGTSCEEEEEEECCTT---------------T---TCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCeEEEEEEecCC---------------C---CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4456788899886543222111 1 2478899989888888777765443
No 67
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=30.73 E-value=70 Score=19.74 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=23.3
Q ss_pred CCCCCHHHHHhhhhhccCCCChhHHHHHhhh
Q 047575 31 AGRLTNEEVSTLVDLSKNNVRPKEIFHTLKT 61 (176)
Q Consensus 31 ~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~ 61 (176)
-.+|++.+++.+..+ ..|.+.++|-..|.-
T Consensus 25 l~~Lt~~e~~vl~l~-~~g~s~~eIA~~l~i 54 (95)
T 3c57_A 25 LSGLTDQERTLLGLL-SEGLTNKQIADRMFL 54 (95)
T ss_dssp --CCCHHHHHHHHHH-HTTCCHHHHHHHHTC
T ss_pred HhcCCHHHHHHHHHH-HcCCCHHHHHHHHCc
Confidence 457999998777665 889999999999853
No 68
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=30.61 E-value=2.7e+02 Score=24.72 Aligned_cols=70 Identities=9% Similarity=-0.061 Sum_probs=34.5
Q ss_pred EEEEeccccccccCcceeEEEeeccCCCeE-EEEEEe-ec-CCccchHHHHHHHHHHHh-c--CCCCCeEEEecCCC
Q 047575 104 VLIMDCTYKVNKYKFPLLEIVGVTLTTMTF-NVDFAY-LE-SKREDNYIWALKRLKTIM-Q--DDMLPSVIVIKREL 174 (176)
Q Consensus 104 vv~~D~ty~tn~~~~pl~~~~g~~~~~~~~-~~~~~~-~~-~E~~~s~~w~l~~~~~~~-~--~~~~p~~iitD~d~ 174 (176)
++.+|.++....-+.+...++..+..+... ..+... .. .|.. +..-++...++.+ . .+..|.-||.-||-
T Consensus 555 iIGiDV~H~~~~~~svs~~A~V~s~dg~~~~~~s~~~~~~~~E~i-~l~~~l~~~L~~y~~~n~~~lP~RIIiyRDG 630 (771)
T 1u04_A 555 IIGIDVAPMKRSEGYIGGSAVMFDSQGYIRKIVPIKIGEQRGESV-DMNEFFKEMVDKFKEFNIKLDNKKILLLRDG 630 (771)
T ss_dssp EEEEEEEEECCTTTCEEEEEEEEETTSCEEEEEEEECCCCSSSSC-CHHHHHHHHHHHHHHTTCCCTTCEEEEECSB
T ss_pred EEEEEEEcCCCCCCceEEEEEEECCCCCEEEEEEEEeecCCccEE-cHHHHHHHHHHHHHHHhCCCCCCEEEEEcCC
Confidence 478999987543334444333345555443 222222 21 2222 2333333333222 1 25789988887774
No 69
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.30 E-value=97 Score=19.26 Aligned_cols=62 Identities=10% Similarity=-0.106 Sum_probs=36.6
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEe
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVI 170 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iit 170 (176)
...+++|..|+.|.-+.- -.+..+ ..-+||||.=++.+.-.-+++.+....-.++..++-+.
T Consensus 30 ~~l~~~f~~~G~i~~~~i---------------~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 30 KKLKEVFSMAGVVVRADI---------------LEDKDG--KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp HHHHHHHTTTSCEEEEEE---------------EECTTC--SEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHhcCCeEEEEE---------------EECCCC--CeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345567888888864421 112222 34588999999988888877766544322333344333
No 70
>2yb5_A FUSC, putative fusidic acid resistance protein; translation, antibiotic resistance, zinc finger; 2.10A {Staphylococcus aureus}
Probab=29.88 E-value=44 Score=24.74 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=47.7
Q ss_pred CCCHHHHHhhhhhccCCCChhHHHHHhhhcC----CCccchHHHHHHHHhhccc------------cccceEEeChHhHH
Q 047575 33 RLTNEEVSTLVDLSKNNVRPKEIFHTLKTRD----TFSVTMMKAICNARYKYKV------------CELDIFWAYPLTFE 96 (176)
Q Consensus 33 ~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~----~~~~~t~kdi~N~~~k~r~------------~i~~if~~~~~~~~ 96 (176)
.+++++++.+..+.+..+.+.++-.+|.+-. |-.++|.++|.....|.++ .+.-+-|.|+.+.+
T Consensus 51 ~~~~e~~~lL~~i~~~~l~~~~~e~~L~~Lk~yV~pm~~lTe~qIrk~F~KaKkLklPdl~~~dw~~ldyLGW~D~~~~R 130 (215)
T 2yb5_A 51 EKDIDISDFITSIDDVKLTKKKAEHLLNELKVYIQDFEIPSSSQLEKIFRKVKKLKRPDINLIDTKEISYLGWNDNSSNR 130 (215)
T ss_dssp TTTCCCTTHHHHHCCTTCCHHHHHHHHHHHGGGBCCCCCCCHHHHHHHTTTCSSCCCCCGGGCCTTSCSSEEEEETTTTE
T ss_pred cCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCCCCCHHHHHHHhhhHHhcCCCCcccCCcccCceeeeccCCCCc
Confidence 4566777777777778888888888887643 4446789999998887666 35567899998854
Q ss_pred H
Q 047575 97 L 97 (176)
Q Consensus 97 ~ 97 (176)
.
T Consensus 131 ~ 131 (215)
T 2yb5_A 131 K 131 (215)
T ss_dssp E
T ss_pred e
Confidence 4
No 71
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=29.84 E-value=63 Score=22.71 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=28.1
Q ss_pred hHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHH
Q 047575 94 TFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLK 156 (176)
Q Consensus 94 ~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~ 156 (176)
..++|..||+|.-+.. +.. . .-+||||+=++.++=.-+++.+-
T Consensus 63 L~~~Fs~fG~V~~V~i-~~k---------------~----~rgfAFVeF~d~~~A~~Ai~~Ln 105 (164)
T 1sjr_A 63 LHQIFSKFGTVLKIIT-FTK---------------N----NQFQALLQYADPVSAQHAKLSLD 105 (164)
T ss_dssp HHHHHHHHSCEEEEEE-EES---------------S----SCEEEEEEESCHHHHHHHHHHST
T ss_pred HHHHHHhcCCEEEEEE-EeC---------------C----CCCEEEEEECCHHHHHHHHHHhC
Confidence 4457889999865542 110 0 12788999888888777766543
No 72
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=29.75 E-value=18 Score=18.18 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=22.2
Q ss_pred CCCHHHHHhhhhhccCCCChhHHHHHhh
Q 047575 33 RLTNEEVSTLVDLSKNNVRPKEIFHTLK 60 (176)
Q Consensus 33 ~ls~~~~~~i~~l~~~g~~~~~I~~~l~ 60 (176)
+||+-|.+.+-.|..+|+.....++.|.
T Consensus 4 kLs~LQ~eLL~aLL~SGlsKe~LiqaL~ 31 (32)
T 1g2y_A 4 KLSQLQTEMLAALLESGLSKEALIQALG 31 (32)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHhc
Confidence 5677788888889999998877776653
No 73
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=29.24 E-value=86 Score=18.09 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=31.5
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
...++.|..||+|..+.-- .+ ......-||||+.=++.++-.-+++.+..
T Consensus 16 ~~l~~~f~~~G~i~~~~i~---------------~~-~~~~~~~g~afV~f~~~~~a~~a~~~l~g 65 (83)
T 3md1_A 16 ETLRNAFKDFPSYLSGHVM---------------WD-MQTGSSRGYGFVSFTSQDDAQNAMDSMQG 65 (83)
T ss_dssp HHHHHHHTTSTTEEEEEEE---------------EC-TTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCeeEEEEE---------------Ec-CCCCCccceEEEEECCHHHHHHHHHHhcC
Confidence 3456678889888654211 11 11223468899999998888877766543
No 74
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.99 E-value=96 Score=18.92 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=31.1
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
...+++|..||.|..+.-....+ . .-+||||.=++.+.-.-+++.+...
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~----------------~--~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cqi_A 30 VLILQLFSQIGPCKSCKMITEHT----------------S--NDPYCFVEFYEHRDAAAALAAMNGR 78 (103)
T ss_dssp HHHHHHHHHHSCEEEEEEECCCC----------------S--SCCEEEEEESSHHHHHHHHHHHTTE
T ss_pred HHHHHHHHhcCCEeEEEEEecCC----------------C--CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34566888999886543222111 1 1268899989888888877766543
No 75
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.94 E-value=78 Score=19.36 Aligned_cols=58 Identities=7% Similarity=0.015 Sum_probs=34.8
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEE
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVI 168 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~i 168 (176)
..+++|..||+|.-+.-- .+ .+ ..-+||||.=++.++-.-+++.+....-.++..++-
T Consensus 31 ~l~~~F~~~G~i~~v~i~---------------~~-~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 31 RLRKAFSPFGTITSAKVM---------------ME-GG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp HHHHTTTTTSCEEEEEEE---------------EC-SS--SEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred HHHHHHHhcCCEEEEEEE---------------cC-CC--CcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 345577788887654311 11 22 345889999999888888777665443223433443
No 76
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.87 E-value=1e+02 Score=20.41 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=32.5
Q ss_pred CCCCHHHHHhhhhhccC---CCChhHHHHHhhhcCCCccchHHHHHHHHhhccc
Q 047575 32 GRLTNEEVSTLVDLSKN---NVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKV 82 (176)
Q Consensus 32 r~ls~~~~~~i~~l~~~---g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r~ 82 (176)
.|+|+.-...+..|.++ .+++.+|...|+++.|. +..-.||+....+.+
T Consensus 14 ~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~--is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 14 LKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGED--VGLATVYRVLTQFEA 65 (136)
T ss_dssp CCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCC--CCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCC--CCHHHHHHHHHHHHH
Confidence 36776665666666543 47788999999887764 346677777665443
No 77
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=28.71 E-value=1e+02 Score=21.02 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=32.6
Q ss_pred hHhHHHHHhCC--cEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 92 PLTFELLKAFT--NVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 92 ~~~~~~~~~f~--dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
...+.+|..|| +|.-+.-- .| ...+..-|||||.=++.++-.-+++.+..
T Consensus 70 ~~L~~~F~~~G~i~v~~v~i~---------------~d-~~tg~skGfaFV~f~~~~~A~~Ai~~lng 121 (156)
T 3n9u_C 70 QQLIQVIRSIGVYDVVELKFA---------------EN-RANGQSKGYAEVVVASENSVHKLLELLPG 121 (156)
T ss_dssp HHHHHHHHHTTCCCEEEEEEE---------------EC-TTTCCEEEEEEEEESCHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHCCccEEEEEEE---------------ec-CCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 45667899999 77543211 11 11123468999999999998888776543
No 78
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=28.38 E-value=65 Score=18.89 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=33.3
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHh
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIM 159 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~ 159 (176)
....++|..||+|..+.--... ......-|+||+.=++.++-.-+++.+....
T Consensus 19 ~~l~~~F~~~G~i~~~~i~~~~---------------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (88)
T 4a8x_A 19 DHIMEIFSTYGKIKMIDMPVER---------------MHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 71 (88)
T ss_dssp HHHHHHHHTTSCEEEEECCEET---------------TEEEEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhCCCEEEEEEEeCC---------------CCCCCCCcEEEEEEecHHHHHHHHHHcCCCe
Confidence 3456688999988654322111 1111245789999999998888777655443
No 79
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=28.28 E-value=95 Score=18.96 Aligned_cols=43 Identities=19% Similarity=0.103 Sum_probs=28.1
Q ss_pred CCCCHHHHHhhhhhc-cC-CCChhHHHHHhhhcCCCccchHHHHHHHHhhcc
Q 047575 32 GRLTNEEVSTLVDLS-KN-NVRPKEIFHTLKTRDTFSVTMMKAICNARYKYK 81 (176)
Q Consensus 32 r~ls~~~~~~i~~l~-~~-g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r 81 (176)
++.|++.+..+..+. +. |.+..+|...+. +....||+++.+++
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~g-------Is~~tl~rW~~~~~ 48 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLG-------INRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHT-------SCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHC-------cCHHHHHHHHHHHh
Confidence 578899987777654 45 777777766542 23566777766554
No 80
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.21 E-value=78 Score=19.14 Aligned_cols=51 Identities=4% Similarity=0.045 Sum_probs=32.1
Q ss_pred hHhHHHHHhCCcEE-EEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVL-IMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 92 ~~~~~~~~~f~dvv-~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
...+.+|..||+|. .+.-.. + ......-|||||.=++.+.-.-+++.+...
T Consensus 24 ~~l~~~F~~~G~i~~~v~i~~---------------~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 24 NFISRAFATMGETVMSVKIIR---------------N-RLTGIPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp HHHHHHHHHTTCCCCEEEEEE---------------C-SSSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHhCCcceEEEEee---------------c-CCCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 34566888899875 432111 1 112234589999999999888777655443
No 81
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.70 E-value=35 Score=21.68 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=17.1
Q ss_pred EEEeecCCccchHHHHHHHHHH
Q 047575 136 DFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 136 ~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
|||||.=++.++-.-+++.+..
T Consensus 65 G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 65 GVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CEEEEECSCHHHHHHHHHHSTT
T ss_pred EEEEEEECCHHHHHHHHHHcCC
Confidence 7889999999888877765543
No 82
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.52 E-value=1.1e+02 Score=18.57 Aligned_cols=50 Identities=18% Similarity=0.086 Sum_probs=32.0
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHh
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIM 159 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~ 159 (176)
.-+.+|..||.|.-+.- -.+. ....-|||||.=++.+.-.-+++.+....
T Consensus 33 ~l~~~F~~~G~i~~v~i---------------~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 82 (100)
T 2do4_A 33 ELEEICKAHGTVKDLRL---------------VTNR--AGKPKGLAYVEYENESQASQAVMKMDGMT 82 (100)
T ss_dssp HHHHHHTTTSCEEEEEE---------------EECT--TSCEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred HHHHHHHhCCCeEEEEE---------------EECC--CCCEEeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567888888754321 1122 22345889999999988888777665443
No 83
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=27.22 E-value=1.1e+02 Score=18.71 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=31.9
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHh
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIM 159 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~ 159 (176)
...++|..||.|.-+.- -.+..| ..-|||||.=++.+.-.-+++.+....
T Consensus 45 ~l~~~F~~~G~i~~v~i---------------~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~ 94 (107)
T 3ulh_A 45 DIQELFAEFGTLKKAAV---------------HYDRSG--RSLGTADVHFERKADALKAMKQYNGVP 94 (107)
T ss_dssp HHHHHHHTTSCEEEEEE---------------EECTTS--CEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHhcCCeEEEEE---------------EECCCC--CcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567888988854321 112222 345889999998888888877665443
No 84
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=27.20 E-value=29 Score=15.63 Aligned_cols=10 Identities=30% Similarity=0.275 Sum_probs=8.1
Q ss_pred chHHHHHHHH
Q 047575 68 TMMKAICNAR 77 (176)
Q Consensus 68 ~t~kdi~N~~ 77 (176)
.|..|+||+.
T Consensus 8 ttmddvynyl 17 (22)
T 3e1k_B 8 TTMDDVYNYI 17 (26)
T ss_pred ccHHHHHHHh
Confidence 4788999985
No 85
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.18 E-value=1e+02 Score=18.29 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=31.6
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
...+++|..||.|.-+.-.. +. .....-|||||.=++.++-.-+++.+..
T Consensus 30 ~~l~~~f~~~G~v~~v~i~~---------------~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g 79 (95)
T 2cqc_A 30 RDLREVFSKYGPIADVSIVY---------------DQ-QSRRSRGFAFVYFENVDDAKEAKERANG 79 (95)
T ss_dssp HHHHHHHHTTSCEEEEEEEE---------------CS-SSSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCeeEEEEEE---------------cC-CCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 34566888899886543211 11 1122458899999998888877776643
No 86
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.65 E-value=1.1e+02 Score=18.73 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=32.0
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRL 155 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~ 155 (176)
...+.+|..||+|..+.-.... ......-|||||.=++.++-.-+++.+
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~---------------~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 30 REIRELFSTFGELKTVRLPKKM---------------TGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp HHHHHHHHTTSCEEEEECCCCC---------------SSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHccCCeEEEEEecCC---------------CCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 3456688999998765432220 011122478899999999988888777
No 87
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=26.62 E-value=1.1e+02 Score=18.50 Aligned_cols=54 Identities=11% Similarity=-0.020 Sum_probs=34.6
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeE
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSV 167 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~ 167 (176)
..+++|..||+|..+.-... .-|||||.=++.++-.-+++.+....-.++..++
T Consensus 16 ~l~~~F~~~G~i~~v~i~~~---------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 69 (101)
T 2hvz_A 16 ELERAFSYYGPLRTVWIARN---------------------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRV 69 (101)
T ss_dssp HHHHHHHHHCCCSEEEEESS---------------------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEE
T ss_pred HHHHHHHhcCCeEEEEEeeC---------------------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEE
Confidence 45568888888754332111 2368999999999988888877665433444344
No 88
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=26.61 E-value=1e+02 Score=19.32 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=19.6
Q ss_pred EEEEEeecCCccchHHHHHHHHHHH
Q 047575 134 NVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 134 ~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
.-|||||.=++.+.-.-+++.+...
T Consensus 66 ~~g~afV~f~~~~~a~~A~~~l~g~ 90 (115)
T 2cpz_A 66 SKCFGFVSYDNPVSAQAAIQSMNGF 90 (115)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred cCccEEEEECCHHHHHHHHHHcCCC
Confidence 4589999999999988887766443
No 89
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=26.50 E-value=1.3e+02 Score=21.28 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=33.3
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
...+++|..||+|..+.-. . .......-|||||.=++.++-.-+++.+...
T Consensus 30 ~~L~~~F~~~G~I~~v~i~---------------~-d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~ 80 (213)
T 4f02_A 30 AMLYEKFSPAGPILSIRVC---------------R-DMITRRSLGYAYVNFQQPADAERALDTMNFD 80 (213)
T ss_dssp HHHHHHHGGGSCEEEEEEE---------------E-CTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCCEEEEEEe---------------c-ccCCCCccccccceeCCHHHHHHHHHHhhhh
Confidence 3456688899998654311 1 1112234689999999999988888765443
No 90
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=26.37 E-value=76 Score=24.25 Aligned_cols=43 Identities=12% Similarity=-0.086 Sum_probs=31.2
Q ss_pred HHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhh
Q 047575 37 EEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYK 79 (176)
Q Consensus 37 ~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k 79 (176)
+.+..|..+.+.|.+..+|...|.+.+|........+++..++
T Consensus 10 ~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r 52 (345)
T 3hot_A 10 QTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQR 52 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 4456777788889999999988887777544556666666554
No 91
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=26.36 E-value=29 Score=18.92 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=20.1
Q ss_pred CCCHHHHHhhhhhcc-CCCChhHHHHH
Q 047575 33 RLTNEEVSTLVDLSK-NNVRPKEIFHT 58 (176)
Q Consensus 33 ~ls~~~~~~i~~l~~-~g~~~~~I~~~ 58 (176)
++++++.+.|....+ +|++..+.+..
T Consensus 21 Rlt~eE~~~l~~~A~~~g~s~SeyiR~ 47 (51)
T 2ba3_A 21 RFSPVEDETIRKKAEDSGLTVSAYIRN 47 (51)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred EECHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 789999999998754 68887666543
No 92
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=25.72 E-value=1.5e+02 Score=23.75 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=36.2
Q ss_pred EEEEecccccc------ccCcceeEEEeec-cCCCeEEEEEEeecC----Ccc----chHHHHHHHHHH--HhcCCCCCe
Q 047575 104 VLIMDCTYKVN------KYKFPLLEIVGVT-LTTMTFNVDFAYLES----KRE----DNYIWALKRLKT--IMQDDMLPS 166 (176)
Q Consensus 104 vv~~D~ty~tn------~~~~pl~~~~g~~-~~~~~~~~~~~~~~~----E~~----~s~~w~l~~~~~--~~~~~~~p~ 166 (176)
++.+|.|+..+ ..+.|-...+..+ +..-+...+..-+.. |.. +-+..+|+.|.+ .. .+..|.
T Consensus 159 iiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~-~~~~P~ 237 (388)
T 2yha_A 159 VVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPAN-NRSLPE 237 (388)
T ss_dssp EEEEEEECSCCCSSSSCCTTSCEEEEEEECCSTTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHHSGGG-TTCCCS
T ss_pred EEEEEEecccccCCCCcCCCCCEEEEEEEEcCCCCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHhhhh-cCCCCc
Confidence 67899999872 3344544333222 122233334444554 222 334445555555 12 257898
Q ss_pred EEEecCC
Q 047575 167 VIVIKRE 173 (176)
Q Consensus 167 ~iitD~d 173 (176)
-||..||
T Consensus 238 rIiiyRD 244 (388)
T 2yha_A 238 NILIFRD 244 (388)
T ss_dssp EEEEEEE
T ss_pred eEEEEec
Confidence 8887766
No 93
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=25.21 E-value=32 Score=21.17 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=7.3
Q ss_pred ecCCCCCCCC
Q 047575 13 ICGLHNHHVA 22 (176)
Q Consensus 13 ~~~~HNH~~~ 22 (176)
....|||++.
T Consensus 65 ~~~~HnH~p~ 74 (87)
T 2rpr_A 65 VMRSHCHQPD 74 (87)
T ss_dssp ECSCCSSCCC
T ss_pred CCCCcCCCCc
Confidence 5678999753
No 94
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=25.16 E-value=56 Score=20.96 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=22.9
Q ss_pred EEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEe
Q 047575 135 VDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVI 170 (176)
Q Consensus 135 ~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iit 170 (176)
-|||||.-++.++-.-+++.+....-+++..++-..
T Consensus 76 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 76 LGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 478899999988888777766544323443344333
No 95
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=24.56 E-value=36 Score=15.96 Aligned_cols=10 Identities=30% Similarity=0.282 Sum_probs=8.0
Q ss_pred chHHHHHHHH
Q 047575 68 TMMKAICNAR 77 (176)
Q Consensus 68 ~t~kdi~N~~ 77 (176)
.|..||||+.
T Consensus 6 TTMDDvyNyl 15 (26)
T 3bts_E 6 TTMDDVYNYL 15 (26)
T ss_pred ccHHHHHHHh
Confidence 4788999984
No 96
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=24.44 E-value=99 Score=20.18 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=31.0
Q ss_pred hHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHh
Q 047575 94 TFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIM 159 (176)
Q Consensus 94 ~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~ 159 (176)
..++|..||.|.-+.-.... .....-|||||.=++.+.-.-+++.+....
T Consensus 63 L~~~F~~~G~I~~v~i~~d~----------------~tg~~~G~afV~F~~~~~A~~Ai~~lng~~ 112 (129)
T 2kxn_B 63 LREVFSKYGPIADVSIVYDQ----------------QSRRSRGFAFVYFENVDDAKEAKERANGME 112 (129)
T ss_dssp HHHHHTTTSCEEEEEEECCS----------------SSSCCCCEEEEEESCHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCeEEEEEEecC----------------CCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 44577888888655432211 011224788999999998888777665443
No 97
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=24.35 E-value=1.2e+02 Score=18.04 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=32.5
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHh
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIM 159 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~ 159 (176)
..+++|..||.|.-+.- -.+.. ...-|||||.=++.+.-.-+++.+....
T Consensus 32 ~l~~~F~~~G~i~~v~i---------------~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (95)
T 2ywk_A 32 ILYELFLQAGPLTKVTI---------------CKDRE--GKPKSFGFVCFKHPESVSYAIALLNGIR 81 (95)
T ss_dssp HHHHHHGGGSCEEEEEE---------------EECTT--SCEEEEEEEEESSTHHHHHHHHHHTTCE
T ss_pred HHHHHHHhcCCEEEEEE---------------EECCC--CCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 44567888888864321 11222 2346899999999999888877665433
No 98
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=23.99 E-value=89 Score=18.82 Aligned_cols=51 Identities=12% Similarity=0.194 Sum_probs=32.2
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
.....+|..||.|.-+.--... .....-|||||.=++.++-.-+++.+...
T Consensus 17 ~~l~~~F~~~G~i~~v~i~~~~----------------~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 67 (96)
T 2x1f_A 17 EQILDLCSNVGPVINLKMMFDP----------------QTGRSKGYAFIEFRDLESSASAVRNLNGY 67 (96)
T ss_dssp HHHHHHHHTTSCEEEEECCBCT----------------TTCCBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCEEEEEEEeCC----------------CCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3456688999988765432211 11123478899888888887777765543
No 99
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.80 E-value=95 Score=18.85 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=24.2
Q ss_pred EEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEe
Q 047575 135 VDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVI 170 (176)
Q Consensus 135 ~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iit 170 (176)
-|||||.=++.+.-.-+++.+....-.++..++-..
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 54 RGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 478999999999888888776544323445455443
No 100
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=23.63 E-value=82 Score=23.01 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=36.1
Q ss_pred hHhHHHHHhCC--cEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeE
Q 047575 92 PLTFELLKAFT--NVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSV 167 (176)
Q Consensus 92 ~~~~~~~~~f~--dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~ 167 (176)
...+++|..|+ .|.-+.-... + ..+ ..-|||||.=++.++-.-+++.+....-.++..+|
T Consensus 83 ~~L~~~F~~~G~~~v~~v~i~~d--~------------~tg--~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V 144 (229)
T 3q2s_C 83 EDLTEAVHSLGVNDILEIKFFEN--R------------ANG--QSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 144 (229)
T ss_dssp HHHHHHHHTTTCCCEEEEEEEEC--T------------TTC--CEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEE
T ss_pred HHHHHHHHHHCCcceEEEEEEec--C------------CCC--ccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEE
Confidence 45677999999 7754432111 0 122 34589999999999988777755433322344444
No 101
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=23.58 E-value=1.2e+02 Score=19.58 Aligned_cols=50 Identities=6% Similarity=0.086 Sum_probs=31.4
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
..+++|..||+|..+.-- .+. .....-|||||.=++.++-.-+++.+...
T Consensus 58 ~l~~~F~~~G~i~~v~i~---------------~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 107 (139)
T 1u6f_A 58 QLRQLFERYGPIESVKIV---------------CDR-ETRQSRGYGFVKFQSGSSAQQAIAGLNGF 107 (139)
T ss_dssp HHHHHHHHHSCEEEEEEE---------------EET-TTTEEEEEEEEEESSHHHHHHHHHHTTTE
T ss_pred HHHHHHHhcCCeEEEEEE---------------EcC-CCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 345678888887654311 111 11234589999999998888777765443
No 102
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=23.26 E-value=71 Score=19.26 Aligned_cols=36 Identities=8% Similarity=0.008 Sum_probs=24.3
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYI 149 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~ 149 (176)
..++.|..||.|.-+.-.. + .=|||||.=++.++-.
T Consensus 27 ~L~~~F~~~G~i~~v~i~~---------------~------srGfaFV~F~~~~~A~ 62 (89)
T 3d2w_A 27 ELQQFFCQYGEVVDVFIPK---------------P------FRAFAFVTFADDKVAQ 62 (89)
T ss_dssp HHHHHHTTTSCEEEEECCS---------------S------CCSEEEEEESCHHHHH
T ss_pred HHHHHHhccCCEEEEEEee---------------C------CCCEEEEEECCHHHHH
Confidence 4566899999987664322 1 2268888888777755
No 103
>1yb3_A Hypothetical protein; structural genomics, protein structure initiative, PSI; 1.60A {Pyrococcus furiosus} SCOP: d.296.1.2
Probab=23.11 E-value=1.4e+02 Score=21.07 Aligned_cols=49 Identities=22% Similarity=0.378 Sum_probs=36.5
Q ss_pred CCcEEEEeccccccccCcceeEEEee---ccCCCeEEEEEEeecCCccchHH
Q 047575 101 FTNVLIMDCTYKVNKYKFPLLEIVGV---TLTTMTFNVDFAYLESKREDNYI 149 (176)
Q Consensus 101 f~dvv~~D~ty~tn~~~~pl~~~~g~---~~~~~~~~~~~~~~~~E~~~s~~ 149 (176)
|+--+.+|+-+..-+|..|.+.+-+. -..-+++.+-+|+..++-.+.|.
T Consensus 48 f~aY~~~dGeW~~m~YPhPafti~p~gevgat~~~~yfv~~v~Ke~ls~~Fi 99 (175)
T 1yb3_A 48 FNAYLYIDGKWEEMKYPHPAFAVKPGGEVGATPQGFYFVFAFPKEELSKEFI 99 (175)
T ss_dssp CSCEEEETTEEEECCSCEEEEEEETTEEEEEETTEEEEEEEEEGGGCCHHHH
T ss_pred cceEEEEcCEEeEccCCcceEEecccceeeeccceEEEEEEecHHHHhHHHH
Confidence 45568899999999999999987543 23346677888888866665554
No 104
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=23.07 E-value=1.6e+02 Score=23.99 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=34.2
Q ss_pred EEEEecccccc------ccCcceeE-EEee-ccCCCeEEEEEEeecC----CccchHH----HHHHHHHH--HhcCCCCC
Q 047575 104 VLIMDCTYKVN------KYKFPLLE-IVGV-TLTTMTFNVDFAYLES----KREDNYI----WALKRLKT--IMQDDMLP 165 (176)
Q Consensus 104 vv~~D~ty~tn------~~~~pl~~-~~g~-~~~~~~~~~~~~~~~~----E~~~s~~----w~l~~~~~--~~~~~~~p 165 (176)
++.+|.|+..+ ..+.|-.. +++- |.+. +...+..-+.. |..+.+. .+|+.|.+ .. .+..|
T Consensus 159 iiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~~~-~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~-~~~~P 236 (437)
T 2yhb_A 159 VVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQHL-GQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPAN-NRSLP 236 (437)
T ss_dssp EEEEEECCCSCCCTTCCSTTSCEEEEEEECCSTTC-CCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCGGG-TTCCC
T ss_pred EEEEEEeccccccCCCcCCCCCEEEEEEEecCCCc-CeeeeEEEEcCCcchhHHHHHHHHHHHHHHHHHhhhhh-cCCCC
Confidence 67899999872 22345433 3332 2232 33334444444 2223333 33344443 12 25789
Q ss_pred eEEEecCC
Q 047575 166 SVIVIKRE 173 (176)
Q Consensus 166 ~~iitD~d 173 (176)
.-||..||
T Consensus 237 ~rIiiyRD 244 (437)
T 2yhb_A 237 ENILIFRD 244 (437)
T ss_dssp SEEEEEEE
T ss_pred ceEEEEeC
Confidence 88887765
No 105
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=23.00 E-value=1.2e+02 Score=19.23 Aligned_cols=44 Identities=14% Similarity=-0.041 Sum_probs=30.7
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
..+.+|..||.|.-+.-. . .+ |||||.=|+.++-.-+++.+...
T Consensus 37 ~L~~lF~~fG~V~~v~i~----------------~--~k----g~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 37 DLVEALQEFGPISYVVVM----------------P--KK----RQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp HHHHHHGGGSCEEEEEEE----------------T--TT----TEEEEEESSHHHHHHHHHHHHHS
T ss_pred HHHHHHhccCCEEEEEEE----------------c--CC----CEEEEEECCHHHHHHHHHHhcCC
Confidence 345678889988644210 0 12 68999999999999888887653
No 106
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=22.95 E-value=47 Score=20.84 Aligned_cols=42 Identities=10% Similarity=0.036 Sum_probs=29.1
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
..+.+|..||+|.-+.- .-+||||.-++.+.-.-+++.+...
T Consensus 44 ~l~~~F~~~G~v~~v~i------------------------~~g~afV~f~~~~~A~~A~~~l~g~ 85 (110)
T 1wf1_A 44 DVETIFSKYGRVAGCSV------------------------HKGYAFVQYSNERHARAAVLGENGR 85 (110)
T ss_dssp HHHHHHGGGSCCSEEEE------------------------ETTEEEEECSSSHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCeEEEEE------------------------eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 44567888888754432 1278999999999888777765443
No 107
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=22.81 E-value=65 Score=20.57 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=29.5
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
...++|..||.|..+.-- .+..| ..-|||||.=++.++-.-+++.+..
T Consensus 23 ~l~~~F~~~G~i~~v~i~---------------~~~~g--~~~g~afV~F~~~~~A~~Ai~~l~g 70 (116)
T 2fy1_A 23 MLKAVFGKHGPISEVLLI---------------KDRTS--KSRGFAFITFENPADAKNAAKDMNG 70 (116)
T ss_dssp HHHHHHHTSSCCSEEEEE---------------CSTTT--TCCCEEEEECSSHHHHHHHHHHCSS
T ss_pred HHHHHHHhcCCEEEEEEE---------------ECCCC--CcccEEEEEECCHHHHHHHHHHhCC
Confidence 455688889887443211 11111 2347889999988888777765443
No 108
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.80 E-value=1.1e+02 Score=19.60 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=29.7
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLK 156 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~ 156 (176)
..+.+|..||.|.-+.--. ++ |||||.=|+.++-.-+++.+.
T Consensus 32 dL~~lF~~fG~V~~v~i~~------------------~k----GfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 32 EVISLGLPFGKVTNLLMLK------------------GK----NQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp HHHHHHHHHCCEEEEEEET------------------TT----TEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCEEEEEEEc------------------CC----CEEEEEECCHHHHHHHHHHhc
Confidence 4566889999886543110 12 789999999998888777664
No 109
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.72 E-value=1.3e+02 Score=19.61 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.0
Q ss_pred EEEeecCCccchHHHHHHHHHH
Q 047575 136 DFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 136 ~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
|||||.=|+.++-.-+++.+..
T Consensus 68 G~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 68 NQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp TEEEEECSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHhcc
Confidence 7899999999999988887764
No 110
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.67 E-value=1.1e+02 Score=20.75 Aligned_cols=49 Identities=10% Similarity=0.144 Sum_probs=31.8
Q ss_pred CCCCHHHHHhhhhhccC---CCChhHHHHHhhhcCCCccchHHHHHHHHhhccc
Q 047575 32 GRLTNEEVSTLVDLSKN---NVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKV 82 (176)
Q Consensus 32 r~ls~~~~~~i~~l~~~---g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r~ 82 (176)
-|+|+.-...+..|.++ .+++.+|...|+++.|. +.+-.||+....+..
T Consensus 13 ~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~--is~aTVYR~L~~L~e 64 (150)
T 2w57_A 13 LKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEE--IGLATVYRVLNQFDD 64 (150)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCC--CCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence 36776665556666443 47778999998887764 345677777665443
No 111
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.65 E-value=1.2e+02 Score=18.31 Aligned_cols=50 Identities=10% Similarity=0.051 Sum_probs=31.7
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
...+++|..||.|.-+.-.... .....-|||||.=++.++-.-+++.+..
T Consensus 23 ~~l~~~F~~~G~i~~v~i~~~~----------------~~~~~~g~afV~f~~~~~a~~A~~~l~g 72 (99)
T 1whw_A 23 EDLEKLFSAYGPLSELHYPIDS----------------LTKKPKGFAFVTFMFPEHAVKAYAEVDG 72 (99)
T ss_dssp HHHHHHHHTTSCEEEEECCCCT----------------TTCCCCSEEEEEESSHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCEeEEEEEecC----------------CCCCcCeEEEEEECCHHHHHHHHHHhCC
Confidence 3456688999988665432211 0112247888988888888777765543
No 112
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=22.44 E-value=1.4e+02 Score=18.15 Aligned_cols=50 Identities=10% Similarity=-0.012 Sum_probs=32.2
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
.....+|..||.|.-+.- -.+..+ ..-|||||.=++.+.-.-+++.+...
T Consensus 30 ~~l~~~F~~~G~i~~v~i---------------~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g~ 79 (105)
T 2dnh_A 30 EDVLRLFQPFGVIDECTV---------------LRGPDG--SSKGCAFVKFSSHTEAQAAIHALHGS 79 (105)
T ss_dssp HHHHHHHTTTSCEEEEEE---------------EECSSS--CEEEEEEEEESSHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhcCCeEEEEE---------------EECCCC--CcCcEEEEEeCCHHHHHHHHHHHcCC
Confidence 345568888998765431 112222 34588999999988888777765543
No 113
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.34 E-value=73 Score=19.99 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=18.3
Q ss_pred EEEEeecCCccchHHHHHHHHHHH
Q 047575 135 VDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 135 ~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
-|||||.=++.++-.-+++.+...
T Consensus 69 kg~afV~f~~~~~A~~Ai~~l~g~ 92 (109)
T 2err_A 69 KGFGFVTFENSADADRAREKLHGT 92 (109)
T ss_dssp TTEEEEECCCSHHHHHHHHHHTTC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCC
Confidence 378999999999888777765443
No 114
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.10 E-value=81 Score=19.27 Aligned_cols=63 Identities=13% Similarity=-0.014 Sum_probs=37.0
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEe
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVI 170 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iit 170 (176)
.....+|..||.|.-+.--.... .+ ..-|||||.=++.++-.-+++.+....-.++..++-..
T Consensus 28 ~~l~~~f~~~G~i~~v~i~~~~~--------------~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 28 DSLRRVFEKYGRVGDVYIPREPH--------------TK--APRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp HHHHHHHTTTSCEEEEECCBCSS--------------SC--SBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEEeCCC--------------CC--CCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 34556788899886554322110 01 23478889888888888887766544333444444443
No 115
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.10 E-value=93 Score=19.25 Aligned_cols=47 Identities=11% Similarity=0.008 Sum_probs=30.5
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
..+++|..|+.|..+.-. . + ++ .-+||||.=++.+.-.-+++.+...
T Consensus 38 ~l~~~F~~~G~v~~~~i~--~-------------~--~~--~~g~afV~f~~~~~A~~A~~~l~g~ 84 (109)
T 1x4a_A 38 DIEDVFYKYGAIRDIDLK--N-------------R--RG--GPPFAFVEFEDPRDAEDAVYGRDGY 84 (109)
T ss_dssp HHHHHHGGGSCEEEEEEC--C-------------S--SS--SSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCeEEEEEE--E-------------C--CC--CCcEEEEEECCHHHHHHHHHHcCCC
Confidence 455688889988655421 1 1 11 2368889889888888877766543
No 116
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=22.05 E-value=2.6e+02 Score=21.12 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=31.9
Q ss_pred CcceeEEEeeccCCCeEEEEEEeec---CCccchHHHHHHHHHHHhc---CC----CCCeEEEecCCC
Q 047575 117 KFPLLEIVGVTLTTMTFNVDFAYLE---SKREDNYIWALKRLKTIMQ---DD----MLPSVIVIKREL 174 (176)
Q Consensus 117 ~~pl~~~~g~~~~~~~~~~~~~~~~---~E~~~s~~w~l~~~~~~~~---~~----~~p~~iitD~d~ 174 (176)
+..+..+.+++..| .+++.++. .-+.+.|.-+|+.+...+. .. ..+.+++.|...
T Consensus 188 ~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 188 GKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp CCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred CCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 33444455555555 45667776 3467777777777665542 11 224588888754
No 117
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=21.90 E-value=81 Score=16.38 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=21.5
Q ss_pred HhhhhhccCCCChhHHHHHhhhcCCC
Q 047575 40 STLVDLSKNNVRPKEIFHTLKTRDTF 65 (176)
Q Consensus 40 ~~i~~l~~~g~~~~~I~~~l~~~~~~ 65 (176)
+.|..|.+.|++..+....|+..+++
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~~~n 31 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKCNWD 31 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcC
Confidence 56888889999999999999876543
No 118
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.75 E-value=1.5e+02 Score=18.10 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=29.5
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKR 154 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~ 154 (176)
..+.+|..|++|.-+.--. + ......-|||||.=++.++-.-+++.
T Consensus 32 ~l~~~F~~~G~v~~v~i~~---------------~-~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 32 TLRSYFSQYGEVVDCVIMK---------------D-KTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp HHHHHHHTTSCEEEEEEEE---------------C-SSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEee---------------C-CCCCCcceEEEEEECCHHHHHHHHHh
Confidence 4556888999886543211 1 11223458899999988888777665
No 119
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=21.63 E-value=1.1e+02 Score=19.20 Aligned_cols=50 Identities=18% Similarity=-0.053 Sum_probs=28.9
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
..++.|..||.|.-+.- -.+.......-|||||.=++.++-.-+++.+..
T Consensus 29 dl~~~f~~~G~V~~v~i---------------~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 29 ETKEECEKYGKVGKCVI---------------FEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp HHHHHGGGGSCEEEEEE---------------EECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCEEEEEE---------------ecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence 44567888998865421 111100011248889998888887766665443
No 120
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.59 E-value=59 Score=19.40 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=29.6
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
...+.+|..||+|.-+.-. -+||||.=++.++-.-+++.+..
T Consensus 23 ~~l~~~F~~~G~i~~v~~~------------------------~g~afV~f~~~~~A~~A~~~l~g 64 (90)
T 2dnq_A 23 QEIRSLFEQYGKVLECDII------------------------KNYGFVHIEDKTAAEDAIRNLHH 64 (90)
T ss_dssp HHHHHHHHTSSCEEEEEEE------------------------TTEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCEEEEEEE------------------------CCEEEEEECCHHHHHHHHHHhcC
Confidence 3456688899988655321 15788988888888877776554
No 121
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=21.58 E-value=64 Score=21.49 Aligned_cols=57 Identities=11% Similarity=-0.030 Sum_probs=36.2
Q ss_pred eChHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeE
Q 047575 90 AYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSV 167 (176)
Q Consensus 90 ~~~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~ 167 (176)
.....+.+|..||+|..+.-... .-|||||.=++.++-.-+++.+....-.++..++
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~---------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN---------------------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS---------------------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC---------------------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456779999999865542211 1368999999998888777765544322343333
No 122
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=21.53 E-value=1.9e+02 Score=19.43 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=32.2
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
....+|..||.|..+.--. ....+..-|||||.-++.+.-.-+++.+...
T Consensus 88 ~L~~~F~~~G~i~~v~i~~----------------~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 137 (165)
T 1rk8_A 88 EIQEKFCDYGEIKNIHLNL----------------DRRTGFSKGYALVEYETHKQALAAKEALNGA 137 (165)
T ss_dssp HHHHHHGGGSCEEEEEEEE----------------CTTTSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCCEEEEEEEe----------------cCCCCcEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 4566889999886543211 1112234588999999988888777765443
No 123
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=21.49 E-value=1.3e+02 Score=17.68 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=29.3
Q ss_pred CCCHHHH-Hh---hhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhhccc
Q 047575 33 RLTNEEV-ST---LVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKV 82 (176)
Q Consensus 33 ~ls~~~~-~~---i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r~ 82 (176)
+.|+|.- .. +..|.-....|+.|++.|.. ++ .|...|....||+|.
T Consensus 9 ~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v--~g--LT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 9 LWTHELHNKFLAAVDHLGVERAVPKKILDLMNV--DK--LTRENVASHLQKFRV 58 (64)
T ss_dssp SSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCC--TT--CCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCC--CC--CCHHHHHHHHHHHHH
Confidence 4455543 33 33344345679999999864 22 678888888887764
No 124
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=21.48 E-value=89 Score=18.93 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=19.6
Q ss_pred CCCHHHHHhhhhhccCCCChhHHHHHhh
Q 047575 33 RLTNEEVSTLVDLSKNNVRPKEIFHTLK 60 (176)
Q Consensus 33 ~ls~~~~~~i~~l~~~g~~~~~I~~~l~ 60 (176)
+|++.+++.+....-.|.+.++|-..|.
T Consensus 37 ~L~~~~r~vl~l~~~~g~s~~eIA~~lg 64 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGWSTAQIATDLG 64 (92)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 6777776555554667888888887774
No 125
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.44 E-value=1.1e+02 Score=18.59 Aligned_cols=49 Identities=8% Similarity=0.138 Sum_probs=30.7
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
..+++|..||.|..+.-. .+ ......-|||||.=++.++-.-+++.+..
T Consensus 24 ~l~~~f~~~G~i~~~~i~---------------~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g 72 (104)
T 1p1t_A 24 QLKDIFSEVGPVVSFRLV---------------YD-RETGKPKGYGFCEYQDQETALSAMRNLNG 72 (104)
T ss_dssp HHHHHHHTTSCCSEEEEE---------------EE-TTTTEEEEEEEEECSCHHHHHHHHHHSSS
T ss_pred HHHHHHHhcCCeeEEEEE---------------eC-CCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 455688888877443211 11 11223468999999999988877766543
No 126
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.99 E-value=1.1e+02 Score=16.59 Aligned_cols=29 Identities=10% Similarity=0.129 Sum_probs=23.6
Q ss_pred HHHHhhhhhccCCCChhHHHHHhhhcCCC
Q 047575 37 EEVSTLVDLSKNNVRPKEIFHTLKTRDTF 65 (176)
Q Consensus 37 ~~~~~i~~l~~~g~~~~~I~~~l~~~~~~ 65 (176)
+..+.|..|.+.|.+..++...|+..+++
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n 35 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYNN 35 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTSC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 34467888999999999999999986654
No 127
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1
Probab=20.96 E-value=93 Score=18.79 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=23.0
Q ss_pred CcEEEEeccccccccCcceeEEEeeccCCCeEEE
Q 047575 102 TNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNV 135 (176)
Q Consensus 102 ~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~ 135 (176)
.||+++.-||....-+ +.|+|.|+-|+-+.|
T Consensus 41 ~dV~vyeqt~eea~~~---lIfvG~DSKgrkQYF 71 (77)
T 1vcc_A 41 TDVVVYEQTWEEALTR---LIFVGSDSKGRRQYF 71 (77)
T ss_dssp EEEEEECCCHHHHTTS---EEEEEECTTSCEEEE
T ss_pred ceEEEeeecHHHhhCc---eEEEeecCCCceeee
Confidence 3677777777665543 469999999998774
No 128
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=20.81 E-value=71 Score=19.56 Aligned_cols=42 Identities=7% Similarity=0.209 Sum_probs=29.6
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
..+.+|..||+|..+.-. -|||||.-++.++-.-+++.+...
T Consensus 39 ~L~~~F~~~G~v~~v~i~------------------------~g~afV~f~~~~~A~~Ai~~l~g~ 80 (97)
T 2xnq_A 39 DLFRIFSPYGHIMQINIK------------------------NAFGFIQFDNPQSVRDAIEXESQE 80 (97)
T ss_dssp HHHHHHGGGSCEEEEEEC------------------------SSEEEEEESSHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCEEEEEEe------------------------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 455688889988655320 268899999888888777765443
No 129
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.80 E-value=1.5e+02 Score=17.93 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=29.4
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKR 154 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~ 154 (176)
....+|..||+|.-+.--. + ......-|||||.-++.++-.-+++.
T Consensus 31 ~l~~~F~~~G~i~~v~i~~---------------~-~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 31 DLKEYFSTFGEVLMVQVKK---------------D-LKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp HHHHHHGGGSCEEEEEEEE---------------C-SSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred HHHHHHHhcCCeEEEEEEe---------------c-CCCCCccceEEEEECCHHHHHHHHHc
Confidence 4566888999886543211 1 11123458899998888888777763
No 130
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=20.75 E-value=81 Score=20.61 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=31.7
Q ss_pred CCCCCHHHHHhhh-hhccCC-----CChhHHHHHhhhcCCCccchHHHHHHHHhhc
Q 047575 31 AGRLTNEEVSTLV-DLSKNN-----VRPKEIFHTLKTRDTFSVTMMKAICNARYKY 80 (176)
Q Consensus 31 ~r~ls~~~~~~i~-~l~~~g-----~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~ 80 (176)
.|+||+++..+|. .|.+.| +..-+|...+.+-.. ...+..||...+.++
T Consensus 41 ~R~Ltddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~-~~P~~eDi~RV~arL 95 (107)
T 3ol3_A 41 KRSLTEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIE-KEPTAEEINQVAARL 95 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHS-SCCCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhc-CCcCHHHHHHHHHHH
Confidence 5889998875544 454432 555778777766433 345678888777654
No 131
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.75 E-value=75 Score=19.28 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=28.0
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLK 156 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~ 156 (176)
...+.+|..||+|.-+.- + .. -|||||.-++.++-.-+++.+.
T Consensus 28 ~~l~~~F~~~G~i~~v~i---------------~---~~----~g~afV~f~~~~~a~~Ai~~l~ 70 (97)
T 1x5p_A 28 TLLRGAFSPFGNIIDLSM---------------D---PP----RNCAFVTYEKMESADQAVAELN 70 (97)
T ss_dssp HHHHHHHTTTSCEEEEEE---------------E---TT----TTEEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCCEEEEEe---------------c---CC----CCEEEEEECCHHHHHHHHHHhC
Confidence 445668889998865432 1 11 1578888888887776666543
No 132
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.75 E-value=1.4e+02 Score=18.56 Aligned_cols=46 Identities=9% Similarity=0.075 Sum_probs=28.4
Q ss_pred hHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHH
Q 047575 94 TFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLK 156 (176)
Q Consensus 94 ~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~ 156 (176)
.+.+|..||+|..+.- -.+.. ...-|||||.-++.+.-.-+++.+.
T Consensus 42 l~~~F~~~G~i~~~~i---------------~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~ 87 (114)
T 1x5o_A 42 LENMLKPFGQVISTRI---------------LRDSS--GTSRGVGFARMESTEKCEAVIGHFN 87 (114)
T ss_dssp HHHTTTTTSCEEEEEE---------------EECSS--SCEEEEEEEEESCHHHHHHHHHHHB
T ss_pred HHHHHHhcCCEEEEEE---------------EECCC--CCcceEEEEEECCHHHHHHHHHHhC
Confidence 4456777888764431 11222 2345889999888888777766543
No 133
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.63 E-value=1.8e+02 Score=19.34 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=28.1
Q ss_pred CCCHHHHHhhhhhccC--CCChhHHHHHhhhcCCCccchHHHHHHHHhhcc
Q 047575 33 RLTNEEVSTLVDLSKN--NVRPKEIFHTLKTRDTFSVTMMKAICNARYKYK 81 (176)
Q Consensus 33 ~ls~~~~~~i~~l~~~--g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r 81 (176)
|+|+.-...+..|.++ .+++.+|...|+++.|+ +..-.||+....+.
T Consensus 19 r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~--is~aTVYR~L~~L~ 67 (145)
T 2fe3_A 19 RITPQRHAILEYLVNSMAHPTADDIYKALEGKFPN--MSVATVYNNLRVFR 67 (145)
T ss_dssp CCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTT--CCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCC--CChhhHHHHHHHHH
Confidence 5666555555555433 46777888888776654 34556666655443
No 134
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=20.58 E-value=1.2e+02 Score=17.54 Aligned_cols=49 Identities=10% Similarity=0.176 Sum_probs=30.7
Q ss_pred HhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 93 LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 93 ~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
...++|..||.|..+.--.. ......-|+||+.=++.++-.-+++.+..
T Consensus 23 ~l~~~f~~~G~i~~v~i~~~----------------~~~~~~~g~afV~f~~~~~a~~A~~~l~g 71 (85)
T 3mdf_A 23 VLHAAFIPFGDITDIQIPLD----------------YETEKHRGFAFVEFELAEDAAAAIDNMNE 71 (85)
T ss_dssp HHHHHHGGGSCEEEEECCEE----------------TTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCEEEEEEEEC----------------CCCCccccEEEEEECCHHHHHHHHHHhCC
Confidence 45567888998865532111 01122347889998988888777765543
No 135
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.45 E-value=65 Score=20.07 Aligned_cols=45 Identities=7% Similarity=0.180 Sum_probs=30.3
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTI 158 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~ 158 (176)
...+.+|..||.|..+.-... -|||||.=++.+.-.-+++.+...
T Consensus 40 ~~l~~~F~~~G~i~~v~i~~~----------------------~g~afV~f~~~~~a~~A~~~l~g~ 84 (109)
T 1x4g_A 40 QLMRQTFSPFGQIMEIRVFPE----------------------KGYSFVRFSTHESAAHAIVSVNGT 84 (109)
T ss_dssp HHHHHHHHHHSCEEEEEEETT----------------------TTEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCeEEEEEeCC----------------------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 345568889998865532211 268899988888888777766443
No 136
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=20.25 E-value=1.8e+02 Score=19.32 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=31.9
Q ss_pred hHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 92 PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 92 ~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
.....+|..|+.|..+.-... ......-+||||.=++.++-.-+++.+..
T Consensus 54 ~~l~~~F~~~G~i~~v~i~~~----------------~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 103 (156)
T 1h2v_Z 54 EQIYELFSKSGDIKKIIMGLD----------------KMKKTACGFCFVEYYSRADAENAMRYING 103 (156)
T ss_dssp HHHHHHHGGGSCEEEEEEEEC----------------TTTCCEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCeEEEEEEec----------------CCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 345668889998865432111 11122458899999998888877776543
No 137
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.23 E-value=64 Score=20.63 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=26.3
Q ss_pred HHHHhCC-cEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHH
Q 047575 96 ELLKAFT-NVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKT 157 (176)
Q Consensus 96 ~~~~~f~-dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~ 157 (176)
++|..|| .|+-+ +| |+|||.=++.++=.-+++.+..
T Consensus 32 ~lF~~yGG~Vl~V----------------tg----------G~AfV~F~~~esA~~A~~~l~G 68 (96)
T 2diu_A 32 RLSDNCGGKVLSI----------------TG----------CSAILRFINQDSAERAQKRMEN 68 (96)
T ss_dssp HHHHTTTCCEEEC----------------CT----------TCEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHcCCeeEEE----------------ec----------CEEEEEECCHHHHHHHHHHhcC
Confidence 5889994 88765 11 8889988888888766665543
Done!