Query 047577
Match_columns 194
No_of_seqs 148 out of 227
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 12:26:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08597 eIF3_subunit: Transla 100.0 2.5E-50 5.4E-55 345.7 9.9 192 1-193 1-210 (245)
2 KOG4813 Translation initiation 100.0 3.5E-45 7.7E-50 310.0 16.0 184 1-185 1-201 (248)
3 KOG4813 Translation initiation 76.4 2.8 6E-05 36.7 3.2 23 1-28 21-43 (248)
4 PF08679 DsrD: Dissimilatory s 65.3 11 0.00023 26.8 3.6 44 129-179 2-47 (67)
5 PF10211 Ax_dynein_light: Axon 62.2 14 0.00031 30.7 4.5 48 115-162 24-80 (189)
6 PF08597 eIF3_subunit: Transla 58.4 3.6 7.9E-05 35.3 0.3 17 121-137 158-174 (245)
7 PF11155 DUF2935: Domain of un 53.2 31 0.00068 26.3 4.8 37 122-158 79-116 (124)
8 PF05794 Tcp11: T-complex prot 51.8 23 0.00049 32.6 4.4 73 97-173 49-127 (441)
9 PRK10947 global DNA-binding tr 50.7 38 0.00082 27.0 4.9 33 154-186 14-46 (135)
10 PF08700 Vps51: Vps51/Vps67; 50.1 58 0.0013 22.8 5.5 37 150-186 8-44 (87)
11 PF15508 NAAA-beta: beta subun 47.2 48 0.001 24.2 4.8 51 124-174 27-80 (95)
12 PF01991 vATP-synt_E: ATP synt 44.8 28 0.00061 27.9 3.5 36 128-163 76-112 (198)
13 PF03750 DUF310: Protein of un 43.2 82 0.0018 24.1 5.7 37 146-182 13-50 (119)
14 PRK10328 DNA binding protein, 42.9 60 0.0013 25.8 5.0 33 154-186 14-46 (134)
15 cd07439 FANCE_c-term Fanconi a 41.8 65 0.0014 28.3 5.5 54 120-173 184-237 (254)
16 PRK09379 membrane-bound transc 41.5 62 0.0013 28.9 5.4 48 128-175 210-257 (303)
17 KOG4001 Axonemal dynein light 38.6 23 0.00049 30.7 2.0 44 117-160 91-143 (259)
18 PF11510 FA_FANCE: Fanconi Ana 35.0 99 0.0021 27.4 5.6 55 119-173 190-244 (263)
19 cd04755 Commd7 COMM_Domain con 32.0 2.7E+02 0.0059 23.2 7.4 60 118-179 4-63 (180)
20 PF04778 LMP: LMP repeated reg 30.1 66 0.0014 26.4 3.3 68 91-158 19-106 (157)
21 PRK11166 chemotaxis regulator 28.9 1.3E+02 0.0028 25.9 5.1 62 119-180 100-163 (214)
22 PHA02729 hypothetical protein; 27.4 64 0.0014 24.2 2.6 38 98-135 6-55 (94)
23 KOG1981 SOK1 kinase belonging 26.6 70 0.0015 31.0 3.4 91 85-175 100-209 (513)
24 PF08708 PriCT_1: Primase C te 23.1 2.5E+02 0.0053 18.9 5.1 26 149-174 41-66 (71)
25 PF10264 Stork_head: Winged he 23.0 99 0.0021 22.6 2.9 62 118-180 1-65 (80)
26 PF03790 KNOX1: KNOX1 domain ; 22.6 1.9E+02 0.004 19.0 3.8 31 143-173 10-40 (45)
27 PHA03253 UL35; Provisional 21.5 1.2E+02 0.0027 29.7 4.0 39 119-157 283-324 (609)
28 PF08236 SRI: SRI (Set2 Rpb1 i 21.3 3.1E+02 0.0067 19.8 5.3 7 136-142 20-26 (88)
29 PRK12798 chemotaxis protein; R 20.6 1.8E+02 0.0039 27.6 4.7 57 118-174 193-249 (421)
30 PF14394 DUF4423: Domain of un 20.5 1.2E+02 0.0026 24.7 3.3 58 118-175 10-67 (171)
31 PF14213 DUF4325: Domain of un 20.0 2.1E+02 0.0045 19.7 4.0 43 128-170 5-55 (74)
No 1
>PF08597 eIF3_subunit: Translation initiation factor eIF3 subunit; InterPro: IPR013906 This shows protein subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae (Baker's yeast) protein Q05775 from SWISSPROT has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p []. ; PDB: 3BPJ_D 2KRB_B.
Probab=100.00 E-value=2.5e-50 Score=345.67 Aligned_cols=192 Identities=46% Similarity=0.700 Sum_probs=71.2
Q ss_pred CCCcccCCCCCCCc--hhhhcCCCCcccCCCcccccCCCCCC-CCCCCC---CCCCCCCCcCCCCCCCCccchhcccchh
Q 047577 1 MEDWEDEQIPPLAS--KVVAESKWDDEDVDESDVKESWEDDD-EPTPAP---PVKPPEKAEKAPSKPASKAPEKKGKTTE 74 (194)
Q Consensus 1 m~dWd~ed~~~~~~--~~~~~~kWe~Ed~dd~~vkdsWddee-e~k~~~---~~~~~~~~~~~~kk~~~K~~~~~~~~~~ 74 (194)
|+|||+++|+|+++ ..++.++|+||++++ +|+|||++++ ++.+.+ +++++++....+++++++...++.+..+
T Consensus 1 M~~Wd~e~~~~~~~~~~~~~~~kwddE~ed~-~v~dsWe~ee~~e~~~e~~~~~~~~k~k~~~~~k~~ek~~~~~~~~~~ 79 (245)
T PF08597_consen 1 MDDWDDEDFEPPAAPPKAAVKNKWDDEDEDD-DVKDSWEDEEDEEEEEEKAKEAAKAKKKKKLKQKIAEKEKKKREEEEE 79 (245)
T ss_dssp --------------------------------SS--TT------------------------------------------
T ss_pred CCCCcccccCCCccccccccccCCCCccccc-cccccccccccccccccccccccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 89999999998644 335799999997554 8999999654 221111 1111111112222222222211111111
Q ss_pred -----hhhccCCCHHHHHHHHHHHHHHhhhHHHHHhhCCC-------CCCCCCccCCCCCHHHHHHHHHHHHHhhcCCCC
Q 047577 75 -----ERKEEVLDPLAEKLRQQRLVEEADYKSTKELFGKG-------GDEKNLDNFIPKSESDFMEYAELISHKLRPYEK 142 (194)
Q Consensus 75 -----~~~~~~~d~~~ek~r~~~~~eeaDL~~A~dLFG~~-------~~~~~l~~~~P~Tk~DF~~~~~~L~~kl~~~~k 142 (194)
....++++|+++|+|+|++|++|||.+|++||||. +...+|+.|+|+|+.||++|+.+|+.+|++|++
T Consensus 80 ~~~~~~~~~~~~d~~~ek~r~q~~~eeaDl~~A~dLFGg~~~~~~~~~~~~~l~~~~pkTk~DF~~~~~~l~~kl~~~~k 159 (245)
T PF08597_consen 80 KAAEEEEDMTPEDPAAEKLRQQRLQEEADLANAKDLFGGVPADPTKDDDSDSLDSFNPKTKEDFEEFAEALAKKLTSFEK 159 (245)
T ss_dssp --------------------------------------------------SSTTT----SHHHHHHHHHHHHHHHGGGTT
T ss_pred HhhhcccccCccCHHHHHHHHHHHHHhhhHHHHHHHhcccccccccCCCcccccccCCCCHHHHHHHHHHHHHHHHcccC
Confidence 11236899999999999999999999999999952 245789999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 047577 143 SYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKLKAEKEAAAGKKK 193 (194)
Q Consensus 143 s~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nEK~K~EK~a~~gkKK 193 (194)
|+||+.||+.|||+||.+|++++||+|+++||+|+|||+|+||++.+||||
T Consensus 160 s~~y~~fl~~l~r~l~~~L~~~~ikki~s~l~~l~nEK~K~EK~~~~~kKK 210 (245)
T PF08597_consen 160 SPHYPSFLKELIRDLCKNLTSEDIKKISSSLTVLANEKQKAEKAAKKKKKK 210 (245)
T ss_dssp STTHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 999999999999999999999999999999999999999999997755544
No 2
>KOG4813 consensus Translation initiation factor eIF3, p35 subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-45 Score=310.00 Aligned_cols=184 Identities=45% Similarity=0.667 Sum_probs=144.7
Q ss_pred CCCcccCCCCCCCc--hhhhcCCCCcccCCCcccccCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccchhcc--------
Q 047577 1 MEDWEDEQIPPLAS--KVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPSKPASKAPEKKG-------- 70 (194)
Q Consensus 1 m~dWd~ed~~~~~~--~~~~~~kWe~Ed~dd~~vkdsWddeee~k~~~~~~~~~~~~~~~kk~~~K~~~~~~-------- 70 (194)
|+||++++..+.++ ..+.+++|+|||+|+ +|++||+|+|+++..+.+..+..+.+.+++.+.+..++.+
T Consensus 1 ~ddwed~d~~~~~~~~~~~~~~~w~~ed~de-~v~dsWeDdDeEk~~e~~~k~eap~k~Kk~~a~k~~qk~~~~~~~~~k 79 (248)
T KOG4813|consen 1 MDDWEDEDEVRAVGPGGAALGDKWDGEDEDE-DVKDSWEDDDEEKKEEAKVKPEAPEKVKKKKASKADQKERKAKERQEK 79 (248)
T ss_pred CcchhhcccccccCcccccccccccccccch-hhhccccccccccccccCCCCCCcCccCccccCccchhhhccchhhHh
Confidence 89999887776543 556899999999887 5999999887432211111111222223333333211111
Q ss_pred ---cchhhhh---ccCCCHHHHHHHHHHHHHHhhhHHHHHhhCCCCCC-CCCccCCCCCHHHHHHHHHHHHHhhcCCCCc
Q 047577 71 ---KTTEERK---EEVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDE-KNLDNFIPKSESDFMEYAELISHKLRPYEKS 143 (194)
Q Consensus 71 ---~~~~~~~---~~~~d~~~ek~r~~~~~eeaDL~~A~dLFG~~~~~-~~l~~~~P~Tk~DF~~~~~~L~~kl~~~~ks 143 (194)
++++.+. ..++.++++++|+|++|++|||++|++|||+.+.. .+++.|||+|+.||++||++|+.+|++|++|
T Consensus 80 a~krkae~es~~~~~~l~~~aek~r~r~lqeesDl~~a~elFgv~d~~~~~~d~fn~~sK~Df~efg~~l~~ki~~~~ks 159 (248)
T KOG4813|consen 80 AKKRKAEPESPAALKPLGQEAEKLRLRALQEESDLALAKELFGVKDTVDEGLDAFNPKSKADFTEFGKLLSDKITPYEKS 159 (248)
T ss_pred hhhhhccccchhhcCccchhhhhHHHHHHHHHhHHHHHHHhcCCcCcccccccccCcccHHHHHHHHHHHHHHhhcccch
Confidence 0111111 24778899999999999999999999999998866 8999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHHHHHHHH
Q 047577 144 YHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKLKAEK 185 (194)
Q Consensus 144 ~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nEK~K~EK 185 (194)
.||++|+++|||++|.+|++++||+|.++||+|+++|+++|+
T Consensus 160 ~~Y~~f~~dLir~~~~~l~a~~lK~V~~s~~vl~~eK~keE~ 201 (248)
T KOG4813|consen 160 LHYASFLKDLIRDVLTNLSAEDLKKVTNSLNVLASEKEKEET 201 (248)
T ss_pred hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999993
No 3
>KOG4813 consensus Translation initiation factor eIF3, p35 subunit [Translation, ribosomal structure and biogenesis]
Probab=76.44 E-value=2.8 Score=36.67 Aligned_cols=23 Identities=22% Similarity=0.669 Sum_probs=17.1
Q ss_pred CCCcccCCCCCCCchhhhcCCCCcccCC
Q 047577 1 MEDWEDEQIPPLASKVVAESKWDDEDVD 28 (194)
Q Consensus 1 m~dWd~ed~~~~~~~~~~~~kWe~Ed~d 28 (194)
|+.|+.++..+ . .+++|+|||++
T Consensus 21 ~~~w~~ed~de----~-v~dsWeDdDeE 43 (248)
T KOG4813|consen 21 GDKWDGEDEDE----D-VKDSWEDDDEE 43 (248)
T ss_pred cccccccccch----h-hhccccccccc
Confidence 56899887554 1 68999999754
No 4
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=65.27 E-value=11 Score=26.80 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=25.9
Q ss_pred HHHHHHHhhc--CCCCccchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHH
Q 047577 129 YAELISHKLR--PYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANE 179 (194)
Q Consensus 129 ~~~~L~~kl~--~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nE 179 (194)
.-+.|...|. +-.+|.+|- +|++.-++...-|.|...+|.|+||
T Consensus 2 ~K~~Ile~L~~k~~~KskfYf-------kD~~k~~pd~k~R~vKKi~~~LV~E 47 (67)
T PF08679_consen 2 AKQKILEFLEAKKKKKSKFYF-------KDFYKAFPDAKPREVKKIVNELVNE 47 (67)
T ss_dssp HHHHHHHHHSSCCCHSS-EEH-------HHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCCceeH-------HHHHHHCCCcCHHHHHHHHHHHHhh
Confidence 3466777765 334688886 4444446666666666667777775
No 5
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=62.20 E-value=14 Score=30.73 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=38.2
Q ss_pred CccCCCCCHHHHHHHHHHHHHhhcCC-CC--------ccchHHHHHHHHHHHhccCC
Q 047577 115 LDNFIPKSESDFMEYAELISHKLRPY-EK--------SYHYIGLLKAVMRLSMTSLK 162 (194)
Q Consensus 115 l~~~~P~Tk~DF~~~~~~L~~kl~~~-~k--------s~~Y~~fl~~lir~l~~~L~ 162 (194)
..+..|.|..|...|.+.|-..|... +. .-.|+.++.+|||.++.+=+
T Consensus 24 ~vS~~p~tR~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~ly~~~F~ELIRQVTi~C~ 80 (189)
T PF10211_consen 24 FVSSAPATRQDVIQLQEWLDKMLQQRQARETGICPVREELYSQCFDELIRQVTIDCP 80 (189)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCcH
Confidence 34678999999999999998877533 22 23699999999999998654
No 6
>PF08597 eIF3_subunit: Translation initiation factor eIF3 subunit; InterPro: IPR013906 This shows protein subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae (Baker's yeast) protein Q05775 from SWISSPROT has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p []. ; PDB: 3BPJ_D 2KRB_B.
Probab=58.44 E-value=3.6 Score=35.34 Aligned_cols=17 Identities=6% Similarity=0.268 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHHHhh
Q 047577 121 KSESDFMEYAELISHKL 137 (194)
Q Consensus 121 ~Tk~DF~~~~~~L~~kl 137 (194)
.+..-|..|-..|...|
T Consensus 158 ~ks~~y~~fl~~l~r~l 174 (245)
T PF08597_consen 158 EKSPHYPSFLKELIRDL 174 (245)
T ss_dssp TTSTTHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHH
Confidence 33345555555555544
No 7
>PF11155 DUF2935: Domain of unknown function (DUF2935); InterPro: IPR021328 This family of proteins with unknown function appears to be restricted to Firmicutes. ; PDB: 3D19_B 3DBY_P.
Probab=53.23 E-value=31 Score=26.27 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHhhcCCC-CccchHHHHHHHHHHHh
Q 047577 122 SESDFMEYAELISHKLRPYE-KSYHYIGLLKAVMRLSM 158 (194)
Q Consensus 122 Tk~DF~~~~~~L~~kl~~~~-ks~~Y~~fl~~lir~l~ 158 (194)
--..|..|-..|...+.++. .+..||.|+.+.+|..+
T Consensus 79 ~~~~~~~Fk~~l~~~~~~~~i~~~l~P~l~~Hi~rEa~ 116 (124)
T PF11155_consen 79 ASQEFINFKKELLELILSCKIFSNLYPLLIDHIIREAE 116 (124)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSTBSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccccchHHHHHHHHHHH
Confidence 34577888888888777766 79999999999999875
No 8
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=51.81 E-value=23 Score=32.59 Aligned_cols=73 Identities=12% Similarity=0.210 Sum_probs=43.7
Q ss_pred hhhHHHHHhhCCCCCCCCCccCCCCCHHHHHHHHHHHHH-hhc-CC-CCcc---chHHHHHHHHHHHhccCChHhHHHHH
Q 047577 97 ADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISH-KLR-PY-EKSY---HYIGLLKAVMRLSMTSLKAADAKDVA 170 (194)
Q Consensus 97 aDL~~A~dLFG~~~~~~~l~~~~P~Tk~DF~~~~~~L~~-kl~-~~-~ks~---~Y~~fl~~lir~l~~~L~~~~ikki~ 170 (194)
.++..+-.||+..- ..|-.+- ...+.+.+...|=. .|. +. .+.. +|..|+..+++.+|+||..+.++++.
T Consensus 49 ~~~~~~~~Ll~~ik--e~L~~ll--~~~~~~~I~e~LD~~li~Qq~~~g~~D~~~l~~~i~~~l~~~CAP~RD~~v~~l~ 124 (441)
T PF05794_consen 49 PDYSRLPQLLEEIK--EILLSLL--PSRLRQEIEEVLDLELIRQQLEHGVLDLVKLARFIISLLKKLCAPMRDEEVKALV 124 (441)
T ss_pred CChhHHHHHHHHHH--HHHHHhc--CHHHHHHHHHHCChHHHHHHHhcCCcCHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 44555555555431 1122222 33344555554444 232 22 2233 56679999999999999999999998
Q ss_pred HHH
Q 047577 171 SSI 173 (194)
Q Consensus 171 ssL 173 (194)
..+
T Consensus 125 ~~~ 127 (441)
T PF05794_consen 125 EKI 127 (441)
T ss_pred HHH
Confidence 866
No 9
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=50.66 E-value=38 Score=27.00 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=29.4
Q ss_pred HHHHhccCChHhHHHHHHHHHHHHHHHHHHHHH
Q 047577 154 MRLSMTSLKAADAKDVASSITAIANEKLKAEKE 186 (194)
Q Consensus 154 ir~l~~~L~~~~ikki~ssL~~l~nEK~K~EK~ 186 (194)
+|-.+..|+.+++..+..-|+++++|+..++.+
T Consensus 14 lra~~re~~~e~Lee~~ekl~~vv~er~ee~~~ 46 (135)
T PRK10947 14 LRAQARECTLETLEEMLEKLEVVVNERREEESA 46 (135)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888999999999999999999999887654
No 10
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=50.07 E-value=58 Score=22.80 Aligned_cols=37 Identities=5% Similarity=0.121 Sum_probs=30.6
Q ss_pred HHHHHHHHhccCChHhHHHHHHHHHHHHHHHHHHHHH
Q 047577 150 LKAVMRLSMTSLKAADAKDVASSITAIANEKLKAEKE 186 (194)
Q Consensus 150 l~~lir~l~~~L~~~~ikki~ssL~~l~nEK~K~EK~ 186 (194)
++.++++++.+++..+|+.+...|...+..+..+=|.
T Consensus 8 ~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~ 44 (87)
T PF08700_consen 8 VDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRK 44 (87)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999988888776553
No 11
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=47.21 E-value=48 Score=24.25 Aligned_cols=51 Identities=14% Similarity=0.267 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCC---hHhHHHHHHHHH
Q 047577 124 SDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLK---AADAKDVASSIT 174 (194)
Q Consensus 124 ~DF~~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~---~~~ikki~ssL~ 174 (194)
.++..+...+...|..+-.+..+..|+..+++.+...++ .++||-|+..+.
T Consensus 27 ~~i~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~EirGIA~~~g 80 (95)
T PF15508_consen 27 DEIRELIEVLKDLLQSFVPSGKVLDFVDKLLPHLLRYLPQPYAEEIRGIAKAAG 80 (95)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 445555555566665554454566788888888777775 477777776543
No 12
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=44.82 E-value=28 Score=27.92 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCCcc-chHHHHHHHHHHHhccCCh
Q 047577 128 EYAELISHKLRPYEKSY-HYIGLLKAVMRLSMTSLKA 163 (194)
Q Consensus 128 ~~~~~L~~kl~~~~ks~-~Y~~fl~~lir~l~~~L~~ 163 (194)
.+-..+...|..|..++ .|..||..||..++..+..
T Consensus 76 ~v~~~~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~ 112 (198)
T PF01991_consen 76 EVFEEVKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGE 112 (198)
T ss_dssp HHHHHHHHHHHCTTCCC-THHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcC
Confidence 44455666788999998 9999999999998877653
No 13
>PF03750 DUF310: Protein of unknown function (DUF310); InterPro: IPR010149 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the C-terminal domain of a minor family of CRISPR-associated proteins. These proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.
Probab=43.20 E-value=82 Score=24.14 Aligned_cols=37 Identities=8% Similarity=0.175 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHhc-cCChHhHHHHHHHHHHHHHHHHH
Q 047577 146 YIGLLKAVMRLSMT-SLKAADAKDVASSITAIANEKLK 182 (194)
Q Consensus 146 Y~~fl~~lir~l~~-~L~~~~ikki~ssL~~l~nEK~K 182 (194)
|..+++.+.+.+.. .|+..+||++=+.++.|.++...
T Consensus 13 ~~~~Ae~~~k~l~~~~lttsQlRkf~~~v~~i~~~~~~ 50 (119)
T PF03750_consen 13 LVDYAEKIAKELKKNKLTTSQLRKFYDEVKRIENKIKR 50 (119)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444 79999999999999998887655
No 14
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=42.87 E-value=60 Score=25.83 Aligned_cols=33 Identities=9% Similarity=0.233 Sum_probs=28.9
Q ss_pred HHHHhccCChHhHHHHHHHHHHHHHHHHHHHHH
Q 047577 154 MRLSMTSLKAADAKDVASSITAIANEKLKAEKE 186 (194)
Q Consensus 154 ir~l~~~L~~~~ikki~ssL~~l~nEK~K~EK~ 186 (194)
+|-.+..|+.+++..+..-|+++++|+..++.+
T Consensus 14 lra~~re~~~e~Lee~~ekl~~vv~er~~~~~~ 46 (134)
T PRK10328 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQ 46 (134)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999999999999999999876554
No 15
>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain. Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.
Probab=41.76 E-value=65 Score=28.27 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHHHHHH
Q 047577 120 PKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSI 173 (194)
Q Consensus 120 P~Tk~DF~~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL 173 (194)
+=|..-|..|...|...--.|++|..|+.|+-.||...-..|.......+...+
T Consensus 184 ~lte~~~~~Lv~~L~~~a~~~skSlkFa~lll~~itky~~~~~~~~~~~L~~~~ 237 (254)
T cd07439 184 PLSEESFSELVSKLQEQAEAFSKSLKFAKLLLAVITKYGPQMSPAHKQSLSEAL 237 (254)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHccHhhcHHHHHHHHHHH
Confidence 478899999999999998899999999999999999999887777666555444
No 16
>PRK09379 membrane-bound transcriptional regulator LytR; Provisional
Probab=41.52 E-value=62 Score=28.88 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHHHHHHHH
Q 047577 128 EYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITA 175 (194)
Q Consensus 128 ~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~ 175 (194)
+|-.+|..++.+...-..|+.++..+-..+..+|+..++..+++.+..
T Consensus 210 ~~i~al~~k~~s~~~~~~~~~i~~~~~~~v~Tnl~~~~~~~l~~~~~~ 257 (303)
T PRK09379 210 QVIQGVIKKGASFSSLTNYGDVLKAIEKNVKTNLTQDQMFDIQKNYKD 257 (303)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHhheeeCCCHHHHHHHHHHHhc
Confidence 556667777776666678999999999999999999999999877654
No 17
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=38.62 E-value=23 Score=30.69 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=34.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhhcCCCC---------ccchHHHHHHHHHHHhcc
Q 047577 117 NFIPKSESDFMEYAELISHKLRPYEK---------SYHYIGLLKAVMRLSMTS 160 (194)
Q Consensus 117 ~~~P~Tk~DF~~~~~~L~~kl~~~~k---------s~~Y~~fl~~lir~l~~~ 160 (194)
+..|-|..|-..+-..|...|..... --.|+.|+.+|||.++.+
T Consensus 91 SstPaTrqD~inl~e~l~~rLk~~~A~~~GicP~rreLYsQcFDElIRqvs~s 143 (259)
T KOG4001|consen 91 SSTPATRQDMINLEEKLESRLKDRGAKPFGICPIRRELYSQCFDELIRQVSVS 143 (259)
T ss_pred ccCcchhhhhccCcHHHHHHHHHhccCCCCcCCCcHHHHHHHHHHHHHHcchh
Confidence 45789999999999888887754322 227999999999996654
No 18
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=35.05 E-value=99 Score=27.37 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHHHHHH
Q 047577 119 IPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSI 173 (194)
Q Consensus 119 ~P~Tk~DF~~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL 173 (194)
.+-+.+.|..|...|...--.|.+|..|..|+-.+|...-..|+..+-.-+...+
T Consensus 190 ~~l~~~~~~~l~~~L~~~a~~~skSlkFakLlLtvltKy~~~it~~~~~~L~~~l 244 (263)
T PF11510_consen 190 VELSQELFSLLVELLCEQAPQFSKSLKFAKLLLTVLTKYQSQITEAHKLSLAEAL 244 (263)
T ss_dssp ----HHHHHHHHHHHH--------SHHHHHHHHHHHHHTGGG--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhHhhhcchHHHHHHHHHHHHcchhccHHHHHHHHHHH
Confidence 3567899999999999988889999999999999999999999988765555444
No 19
>cd04755 Commd7 COMM_Domain containing protein 7. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=31.99 E-value=2.7e+02 Score=23.19 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHH
Q 047577 118 FIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANE 179 (194)
Q Consensus 118 ~~P~Tk~DF~~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nE 179 (194)
.|.-.-+.|..+-..|..+|+....+......+++| .....++..+|+-|+.+|.-|.+.
T Consensus 4 in~l~~~~f~~l~~~i~~~L~~~k~~~~~~~~~~ef--~~~~~~~~~dlk~vi~~l~fi~~~ 63 (180)
T cd04755 4 LNQLSEQQFSRLTEILFEFLLEPKESERLLNQLDEF--AGENGISLGPLKNIVKSILLVPNG 63 (180)
T ss_pred cccCCHHHHHHHHHHHHHHHhccchHhHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHH
Confidence 455667889999999999997666656666777786 777889999999999999777653
No 20
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=30.12 E-value=66 Score=26.42 Aligned_cols=68 Identities=15% Similarity=0.257 Sum_probs=49.8
Q ss_pred HHHHHHhhhHHHHHhhCCCCC-----------------CCCCccCCCCCHHHHHHHHH---HHHHhhcCCCCccchHHHH
Q 047577 91 QRLVEEADYKSTKELFGKGGD-----------------EKNLDNFIPKSESDFMEYAE---LISHKLRPYEKSYHYIGLL 150 (194)
Q Consensus 91 ~~~~eeaDL~~A~dLFG~~~~-----------------~~~l~~~~P~Tk~DF~~~~~---~L~~kl~~~~ks~~Y~~fl 150 (194)
-+.+++..+..|-..|...+. ..-|+.|+-.-...|.+|.+ .|-..|......|+|..++
T Consensus 19 aK~~L~~ei~kA~q~~~snnt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~eLq~tr~~I~eFi~~~K~NpnY~~li 98 (157)
T PF04778_consen 19 AKTELDKEIQKANQAVASNNTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFNELQQTRKQIDEFINKNKNNPNYAELI 98 (157)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCCccHHHHH
Confidence 345677777788887765441 12367899999999988755 5556788888899999888
Q ss_pred HHHHHHHh
Q 047577 151 KAVMRLSM 158 (194)
Q Consensus 151 ~~lir~l~ 158 (194)
..|.+..-
T Consensus 99 ~~Lt~~kd 106 (157)
T PF04778_consen 99 KKLTQKKD 106 (157)
T ss_pred HHHHHHHH
Confidence 88876543
No 21
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=28.94 E-value=1.3e+02 Score=25.89 Aligned_cols=62 Identities=19% Similarity=0.160 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCC--ccchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHHH
Q 047577 119 IPKSESDFMEYAELISHKLRPYEK--SYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEK 180 (194)
Q Consensus 119 ~P~Tk~DF~~~~~~L~~kl~~~~k--s~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nEK 180 (194)
+|-+..+|..|...+..+|..... ......+++=++-+-...|+..-|+||+..|.-|-..=
T Consensus 100 ~~~~~~e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI~mAqdFQDLTGQvI~kVi~~v~~vE~~L 163 (214)
T PRK11166 100 NPIELADARELVTDTRAFLADVPEHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQL 163 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHccchHhHhHHHHHHHHHHHHHHHHH
Confidence 578899999999999998876654 33444577777777789999999999999887665443
No 22
>PHA02729 hypothetical protein; Provisional
Probab=27.40 E-value=64 Score=24.17 Aligned_cols=38 Identities=26% Similarity=0.516 Sum_probs=26.5
Q ss_pred hhHHHHHhhCCCCC-C-----------CCCccCCCCCHHHHHHHHHHHHH
Q 047577 98 DYKSTKELFGKGGD-E-----------KNLDNFIPKSESDFMEYAELISH 135 (194)
Q Consensus 98 DL~~A~dLFG~~~~-~-----------~~l~~~~P~Tk~DF~~~~~~L~~ 135 (194)
+|-.|++||.-.+. + ..-+.+.|.|..||.=|++++--
T Consensus 6 ~~~~~~elf~L~N~dgkniAW~~~k~~~~~diW~P~tedDYkFL~~LV~~ 55 (94)
T PHA02729 6 DFSEARELFSLTNDDNRNIAWDTDKLDDDTDIWTPVTEDDYKFLSRLVLM 55 (94)
T ss_pred eccchhhhheeeccCCccccccccccccCCceeecCcchHHHHHHHHHHH
Confidence 45678999986541 1 12356899999999877776544
No 23
>KOG1981 consensus SOK1 kinase belonging to the STE20/SPS1/GC kinase family [Signal transduction mechanisms]
Probab=26.56 E-value=70 Score=30.97 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhCCCCCC------------CCCccC-CCCCHHHHHHHHHHHHH-hhcCCC--Cc---cc
Q 047577 85 AEKLRQQRLVEEADYKSTKELFGKGGDE------------KNLDNF-IPKSESDFMEYAELISH-KLRPYE--KS---YH 145 (194)
Q Consensus 85 ~ek~r~~~~~eeaDL~~A~dLFG~~~~~------------~~l~~~-~P~Tk~DF~~~~~~L~~-kl~~~~--ks---~~ 145 (194)
..+.|.++....|=.++-+.-+...... ..|-.+ -|..-.-=.+.-+.|=. .|++.. ++ .+
T Consensus 100 sL~~~vKetmhkAFWD~l~~qls~~PPdfs~~i~ll~Evkd~L~~~llp~~~r~r~eInevLD~dll~Qele~G~Ldi~~ 179 (513)
T KOG1981|consen 100 SLQGRVKETMHKAFWDDLREQLSKDPPDFSYAISLLKEVKDTLLDLLLPVHTRLRAEINEVLDTDLLRQELESGTLDISY 179 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence 4566667776666555555433332110 011112 15554444444444444 333321 22 25
Q ss_pred hHHHHHHHHHHHhccCChHhHHHHHHHHHH
Q 047577 146 YIGLLKAVMRLSMTSLKAADAKDVASSITA 175 (194)
Q Consensus 146 Y~~fl~~lir~l~~~L~~~~ikki~ssL~~ 175 (194)
|+.|+.++++.+|.|+..+.++++.+...+
T Consensus 180 L~~fvl~ll~~lCAPaRDe~V~~l~~itdv 209 (513)
T KOG1981|consen 180 LSEFVLDLLSRLCAPARDEEVAKLRSITDV 209 (513)
T ss_pred HHHHHHHHHHHhcCCcccHHHhhhhhHHHH
Confidence 668999999999999999998877655443
No 24
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=23.08 E-value=2.5e+02 Score=18.95 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=18.4
Q ss_pred HHHHHHHHHhccCChHhHHHHHHHHH
Q 047577 149 LLKAVMRLSMTSLKAADAKDVASSIT 174 (194)
Q Consensus 149 fl~~lir~l~~~L~~~~ikki~ssL~ 174 (194)
++..+-..+..||+..+|+.|+.|+-
T Consensus 41 ~~~~~N~~~~~PL~~~Ev~~i~kSi~ 66 (71)
T PF08708_consen 41 LAQAINSNFSPPLPESEVKAIAKSIA 66 (71)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 33334444467999999999988863
No 25
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=23.03 E-value=99 Score=22.62 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCC---ccchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHHH
Q 047577 118 FIPKSESDFMEYAELISHKLRPYEK---SYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEK 180 (194)
Q Consensus 118 ~~P~Tk~DF~~~~~~L~~kl~~~~k---s~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nEK 180 (194)
|+|-+--.|.-|++.|...|..+.. +..--.+++.| +..+..|..=...-|-.+|.+|..|+
T Consensus 1 m~pi~Q~qfiPL~EvlC~~I~dln~~~~~at~E~l~~~L-~~~yp~i~~Ps~e~l~~~L~~Li~er 65 (80)
T PF10264_consen 1 MSPISQSQFIPLPEVLCWVISDLNAAGQPATQETLREHL-RKHYPGIAIPSQEVLYNTLGTLIKER 65 (80)
T ss_pred CcccccccceeHHHHHHHHHHHHhccCCcchHHHHHHHH-HHhCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5778888999999999998865543 33444444444 34444564444455777788877653
No 26
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=22.60 E-value=1.9e+02 Score=18.96 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=25.2
Q ss_pred ccchHHHHHHHHHHHhccCChHhHHHHHHHH
Q 047577 143 SYHYIGLLKAVMRLSMTSLKAADAKDVASSI 173 (194)
Q Consensus 143 s~~Y~~fl~~lir~l~~~L~~~~ikki~ssL 173 (194)
.|+|+.+|...|...=+.=+.+.+-.|...+
T Consensus 10 HP~Y~~Ll~Ayi~C~KVGAP~e~~~~L~e~~ 40 (45)
T PF03790_consen 10 HPLYPRLLAAYIDCQKVGAPPEVVARLDEIL 40 (45)
T ss_pred CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5999999999999888888888776665544
No 27
>PHA03253 UL35; Provisional
Probab=21.54 E-value=1.2e+02 Score=29.72 Aligned_cols=39 Identities=23% Similarity=0.468 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHHh--hcCC-CCccchHHHHHHHHHHH
Q 047577 119 IPKSESDFMEYAELISHK--LRPY-EKSYHYIGLLKAVMRLS 157 (194)
Q Consensus 119 ~P~Tk~DF~~~~~~L~~k--l~~~-~ks~~Y~~fl~~lir~l 157 (194)
.|.|+++|-+|+..+... ++++ ..+|||.-+|-.|+.-+
T Consensus 283 vPelR~tfldLa~lv~~l~lv~~~~~~~P~FkP~L~~Lf~~~ 324 (609)
T PHA03253 283 LPDLKETILDLAALISNMNLVKPDKDLFPHYKLILNKLFEIG 324 (609)
T ss_pred CchHHHHHHHHHHHHhhcccccCCCCCCcchhHHHHHHHHHH
Confidence 599999999999999997 7764 45899998777776544
No 28
>PF08236 SRI: SRI (Set2 Rpb1 interacting) domain; InterPro: IPR013257 The SRI (Set2 Rpb1 interacting) domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. This domain is conserved from yeast to humans. Members of this family form a compact, closed three-helix bundle, with an up-down-up topology. The first and second helices are antiparallel to each other and are of similar length; the third helix, which is packed across helices alpha1 and alpha2 is slightly shorter, consisting of only 15 amino acids. Most conserved hydrophobic residues are largely buried in the interior of the structure and form an extensive and contiguous hydrophobic core that stabilises the packing of the three-helix bundle. This domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. ; GO: 0018024 histone-lysine N-methyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0034968 histone lysine methylation, 0005694 chromosome; PDB: 2A7O_A 2C5Z_A.
Probab=21.27 E-value=3.1e+02 Score=19.84 Aligned_cols=7 Identities=43% Similarity=0.619 Sum_probs=3.0
Q ss_pred hhcCCCC
Q 047577 136 KLRPYEK 142 (194)
Q Consensus 136 kl~~~~k 142 (194)
.|.+|.+
T Consensus 20 ~l~~y~~ 26 (88)
T PF08236_consen 20 LLNKYRK 26 (88)
T ss_dssp HHCTTTT
T ss_pred HHHHccc
Confidence 3444443
No 29
>PRK12798 chemotaxis protein; Reviewed
Probab=20.59 E-value=1.8e+02 Score=27.61 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHHHHHHH
Q 047577 118 FIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSIT 174 (194)
Q Consensus 118 ~~P~Tk~DF~~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~ 174 (194)
|.-....+++.|.-....+++.|..|++-.+|...|+--++.--.....-.|...|.
T Consensus 193 ~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls 249 (421)
T PRK12798 193 FIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILS 249 (421)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 334455678889888889999999999888888877766664333333333444443
No 30
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=20.45 E-value=1.2e+02 Score=24.73 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHHHHHHHH
Q 047577 118 FIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITA 175 (194)
Q Consensus 118 ~~P~Tk~DF~~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~ 175 (194)
+..-+.+.|.-|..-....|+....-..|..=...|.+.|+..++.+++++....|.-
T Consensus 10 ~~~l~~~~~~~~~~W~~~~ir~l~~l~~~~~d~~~iak~l~p~is~~ev~~sL~~L~~ 67 (171)
T PF14394_consen 10 VRVLDEDEFEYYSSWYHPAIRELLPLMPFAPDPEWIAKRLRPKISAEEVRDSLEFLEK 67 (171)
T ss_pred eeeccHHHHHHHhhhHHHHHHHHhhcCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4566788999999888887776665555555567788999999999999988777754
No 31
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=20.03 E-value=2.1e+02 Score=19.70 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=29.2
Q ss_pred HHHHHHHHhhc-------CCCCccchH-HHHHHHHHHHhccCChHhHHHHH
Q 047577 128 EYAELISHKLR-------PYEKSYHYI-GLLKAVMRLSMTSLKAADAKDVA 170 (194)
Q Consensus 128 ~~~~~L~~kl~-------~~~ks~~Y~-~fl~~lir~l~~~L~~~~ikki~ 170 (194)
.|++.|.+.|. .|+.-.-|+ +|+..+++.|....+.+.+++..
T Consensus 5 ~~~~~i~~~l~~~~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~~~~~l 55 (74)
T PF14213_consen 5 RLRDEIEPALKEGEKVVLDFEGVESITSSFLNEAFGQLVREFGEEEIKKRL 55 (74)
T ss_pred HHHHHHHHHHhcCCeEEEECCCcccccHHHHHHHHHHHHHHcCHHHHhhee
Confidence 34444555443 455544455 69999999999999877777654
Done!