Query 047577
Match_columns 194
No_of_seqs 148 out of 227
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 22:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bpj_A Eukaryotic translation 100.0 1.4E-28 4.7E-33 178.4 8.9 76 113-188 3-78 (80)
2 1ucr_A Protein DSVD; dissimila 66.5 4.7 0.00016 28.4 3.1 45 128-179 3-49 (78)
3 1ov9_A VICH protein; dimer, he 65.1 9.8 0.00033 24.4 4.2 34 153-186 12-45 (50)
4 3lys_A Prophage PI2 protein 01 49.5 50 0.0017 22.4 6.2 60 119-178 25-84 (112)
5 3nr7_A DNA-binding protein H-N 45.9 42 0.0014 23.7 5.3 33 154-186 17-49 (86)
6 2khq_A Integrase; all-alpha, s 39.4 70 0.0024 21.1 5.6 28 151-178 53-80 (110)
7 2izy_A CAMP-dependent protein 37.3 79 0.0027 20.1 5.4 45 140-184 4-48 (54)
8 3aj1_A Cellulose synthase oper 36.7 17 0.0006 28.9 2.2 34 137-170 12-45 (167)
9 2z9e_A Cellulose synthase oper 30.1 26 0.00089 27.9 2.2 35 137-171 12-46 (167)
10 4de9_A Putative transcriptiona 27.5 48 0.0017 28.0 3.6 46 127-172 188-233 (286)
11 2vy8_A Polymerase basic protei 27.3 26 0.00091 27.0 1.7 41 124-169 39-82 (157)
12 2ilr_A Protein FACE, fanconi a 26.1 1.2E+02 0.0042 25.6 5.9 52 118-169 189-240 (264)
13 3nxh_A Transcriptional regulat 25.8 29 0.00099 29.1 1.9 47 127-173 165-211 (269)
14 3pe5_A Uncharacterized protein 25.6 45 0.0016 29.9 3.2 49 128-176 266-314 (403)
15 3v6i_A V-type ATP synthase sub 23.9 55 0.0019 25.4 3.1 30 132-161 85-114 (187)
16 2oxo_A Integrase; DNA-binding 23.5 1.4E+02 0.0049 18.7 6.0 12 122-133 47-58 (103)
17 3r15_A Factor H binding protei 23.4 1.1E+02 0.0037 22.0 4.2 35 143-177 23-58 (93)
18 2w6a_A ARF GTPase-activating p 22.1 1E+02 0.0034 20.6 3.6 50 119-180 8-57 (63)
19 3r2v_A PB2 C-terminal subunit; 20.9 23 0.0008 28.5 0.3 28 142-169 51-81 (216)
No 1
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=99.95 E-value=1.4e-28 Score=178.37 Aligned_cols=76 Identities=34% Similarity=0.561 Sum_probs=69.4
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHHHHHHHHHHh
Q 047577 113 KNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKLKAEKEAA 188 (194)
Q Consensus 113 ~~l~~~~P~Tk~DF~~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nEK~K~EK~a~ 188 (194)
.+|+.|+|+|++||++||++|+++|++|++|+||+.|+++|||+||.+|++++||+|+++||+|+|||+|+||+++
T Consensus 3 ~~l~~f~P~Tk~dF~~~~~~l~~kl~~~~ks~~y~~f~~~lir~l~~~L~~~dikkv~s~l~~l~nEK~K~EK~~k 78 (80)
T 3bpj_A 3 YGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKITNSLTVLCSEKQKQEKQSK 78 (80)
T ss_dssp -CTTTCCCCSHHHHHHHHHHHHHHHGGGTTSTTHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999854
No 2
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=66.53 E-value=4.7 Score=28.43 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCC--CCccchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHH
Q 047577 128 EYAELISHKLRPY--EKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANE 179 (194)
Q Consensus 128 ~~~~~L~~kl~~~--~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nE 179 (194)
++.+.|...|..- .+|.+|- ++++.-++...-|.|...||.|+||
T Consensus 3 e~K~~Ile~l~~k~~~KskfYf-------~D~~k~~P~~k~r~vKK~~~~LV~E 49 (78)
T 1ucr_A 3 EAKQKVVDFLNSKSGSKSKFYF-------NDFTDLFPDMKQREVKKILTALVND 49 (78)
T ss_dssp HHHHHHHHHHSSHHHHSSCEEH-------HHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccchH-------HHHHHHccccCHHHHHHHHHHHHhc
Confidence 4567788888776 6788886 4555445555555555556667765
No 3
>1ov9_A VICH protein; dimer, helix, coiled-coil, DNA binding protein; 2.30A {Vibrio cholerae} SCOP: a.155.1.1
Probab=65.09 E-value=9.8 Score=24.38 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=30.5
Q ss_pred HHHHHhccCChHhHHHHHHHHHHHHHHHHHHHHH
Q 047577 153 VMRLSMTSLKAADAKDVASSITAIANEKLKAEKE 186 (194)
Q Consensus 153 lir~l~~~L~~~~ikki~ssL~~l~nEK~K~EK~ 186 (194)
-+|-.+..|+.+++..+..-|+++.+|+..++.+
T Consensus 12 sLRA~arelsle~Lee~~eKl~~Vv~Erree~~~ 45 (50)
T 1ov9_A 12 SLRAYARELTIEQLEEALDKLTTVVQERKEAEAE 45 (50)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688899999999999999999999999887765
No 4
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=49.49 E-value=50 Score=22.39 Aligned_cols=60 Identities=7% Similarity=-0.038 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHH
Q 047577 119 IPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIAN 178 (194)
Q Consensus 119 ~P~Tk~DF~~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~n 178 (194)
.|.|...|...-+-|.+.|....=+-.=+..++.++..+...++..-++.+.+.|..+.+
T Consensus 25 ~~~T~~~y~~~~~~i~p~~g~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~i~~ 84 (112)
T 3lys_A 25 DEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAKASTKGFHTRVRASIQ 84 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSCBTTTCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCHHhCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 345555444433344444322111112224555555666666777777777777777665
No 5
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=45.95 E-value=42 Score=23.71 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=29.3
Q ss_pred HHHHhccCChHhHHHHHHHHHHHHHHHHHHHHH
Q 047577 154 MRLSMTSLKAADAKDVASSITAIANEKLKAEKE 186 (194)
Q Consensus 154 ir~l~~~L~~~~ikki~ssL~~l~nEK~K~EK~ 186 (194)
+|-.+..|+.+++..+..-|++++.|+..++.+
T Consensus 17 LRA~arel~le~Lee~leKl~~VveERree~~~ 49 (86)
T 3nr7_A 17 LRAQARESTLETLEEMLEKLEVVVNERREEESA 49 (86)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888999999999999999999999877543
No 6
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=39.43 E-value=70 Score=21.11 Aligned_cols=28 Identities=7% Similarity=-0.008 Sum_probs=14.9
Q ss_pred HHHHHHHhccCChHhHHHHHHHHHHHHH
Q 047577 151 KAVMRLSMTSLKAADAKDVASSITAIAN 178 (194)
Q Consensus 151 ~~lir~l~~~L~~~~ikki~ssL~~l~n 178 (194)
..++..+...++..-++.+.+.|..+.+
T Consensus 53 ~~~~~~l~~~~s~~t~~~~~~~l~~~~~ 80 (110)
T 2khq_A 53 QKFLNEYGLTHSYETIRKLNSYIRNAFD 80 (110)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333333344566666666666666554
No 7
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=37.30 E-value=79 Score=20.11 Aligned_cols=45 Identities=9% Similarity=-0.035 Sum_probs=35.1
Q ss_pred CCCccchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHHHHHHH
Q 047577 140 YEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKLKAE 184 (194)
Q Consensus 140 ~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nEK~K~E 184 (194)
+.-.+.+..+|.+|++.+|..=+.+=+.=.+..++.|...+.+.|
T Consensus 4 ~~ip~~l~~lL~~f~~evlr~qP~Di~~Faa~YF~~L~~~~~~~~ 48 (54)
T 2izy_A 4 IQIPPGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREARRGLE 48 (54)
T ss_dssp -CCCTTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhHHHHh
Confidence 444677889999999999988888778888888888887665544
No 8
>3aj1_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule R cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj2_A 3a8e_A
Probab=36.68 E-value=17 Score=28.93 Aligned_cols=34 Identities=9% Similarity=0.094 Sum_probs=26.3
Q ss_pred hcCCCCccchHHHHHHHHHHHhccCChHhHHHHH
Q 047577 137 LRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVA 170 (194)
Q Consensus 137 l~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ 170 (194)
++.|++.|.+..||..|.-.++.++..++.+-+-
T Consensus 12 ~~~~~~~P~~~~Fl~aLa~Ei~~~ag~ee~~~fL 45 (167)
T 3aj1_A 12 MTIFEKKPDFTLFLQTLSWEIDDQVGIEVRNELL 45 (167)
T ss_dssp -----CCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeccCcchHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5778999999999999999999999999887653
No 9
>2z9e_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule ring, cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj1_A 3aj2_A 3a8e_A 2z9f_A
Probab=30.12 E-value=26 Score=27.92 Aligned_cols=35 Identities=9% Similarity=0.090 Sum_probs=27.0
Q ss_pred hcCCCCccchHHHHHHHHHHHhccCChHhHHHHHH
Q 047577 137 LRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVAS 171 (194)
Q Consensus 137 l~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~s 171 (194)
++-|+.|+.+..||..|+-.++.++..++++.+--
T Consensus 12 ~~~~~~~~~W~~FL~aLa~E~~~~ag~~e~~~fLr 46 (167)
T 2z9e_A 12 MTIFEKKPDFTLFLQTLSWEIDDQVGIEVRNELLR 46 (167)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 56788999999999999999999999999887643
No 10
>4de9_A Putative transcriptional regulator YWTF; possible role in WALL techoic acid synthesis, membrane prote; HET: VTP; 1.79A {Bacillus subtilis} PDB: 3mej_A*
Probab=27.47 E-value=48 Score=28.03 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHHHHH
Q 047577 127 MEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASS 172 (194)
Q Consensus 127 ~~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ss 172 (194)
+.|-.+|..++.+...-..|+.++..+...+..+|+..+|..++..
T Consensus 188 q~vl~al~~k~~s~~~l~~~~~l~~~~~~~v~Tnls~~~i~~l~~~ 233 (286)
T 4de9_A 188 MEVLSAIIDKSKSLSSIPAYDDIVDTMGQNLKMNLSLKDAIGLFPF 233 (286)
T ss_dssp HHHHHHHHHHHHCC-----------------EESSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHhcceEeCCCHHHHHHHHHh
Confidence 4566777777777666668899999999999999999999988765
No 11
>2vy8_A Polymerase basic protein 2; viral protein, transcription, mRNA capping, mitochondrion, mRNA processing; 1.2A {Influenza a virus} PDB: 2vy7_A*
Probab=27.28 E-value=26 Score=27.00 Aligned_cols=41 Identities=10% Similarity=0.369 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhcCCCCccchHHHHHHHHH---HHhccCChHhHHHH
Q 047577 124 SDFMEYAELISHKLRPYEKSYHYIGLLKAVMR---LSMTSLKAADAKDV 169 (194)
Q Consensus 124 ~DF~~~~~~L~~kl~~~~ks~~Y~~fl~~lir---~l~~~L~~~~ikki 169 (194)
..|+-|...|-.+| ..+|++|+..+++ +....|..++|-++
T Consensus 39 ~~fe~f~s~ip~~~-----~gqysgf~r~~~~qmrd~~~~~~t~q~ikL 82 (157)
T 2vy8_A 39 MEFEPFQSLVPKAI-----RGQYSGFVRTLFQQMRDVLGTFDTTQIIKL 82 (157)
T ss_dssp GGGHHHHHHSCTTT-----HHHHHHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred hhhhhHHHhhhHHH-----hhhhhHHHHHHHHHHHHHHccccHHHHHHh
Confidence 45666766555555 5789999998864 55555666665443
No 12
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=26.05 E-value=1.2e+02 Score=25.57 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHH
Q 047577 118 FIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDV 169 (194)
Q Consensus 118 ~~P~Tk~DF~~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki 169 (194)
=.+-|.+-|..|...|...--.|++|..|..|+-.||...-.+|+..+---+
T Consensus 189 k~~L~~~~i~~Lv~~L~~~a~~~skSlkFakLll~~itky~~~i~~~~~~~L 240 (264)
T 2ilr_A 189 QVEMTPEKFSVLMEKLCKKGLAATTSMAYAKLMLTVMTKYQANITETQRLGL 240 (264)
T ss_dssp CCCCCHHHHHHHHHHHHC-----CCSHHHHHHHHHHHHHTGGGCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhHHhhcccHHHHHHHHHHHHhHHhcCHHHHHHH
Confidence 3467789999999999998889999999999999999999888887654433
No 13
>3nxh_A Transcriptional regulator YVHJ; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; 2.58A {Bacillus subtilis subsp}
Probab=25.75 E-value=29 Score=29.13 Aligned_cols=47 Identities=2% Similarity=-0.002 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHHHHHH
Q 047577 127 MEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSI 173 (194)
Q Consensus 127 ~~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL 173 (194)
+.|-.+|..++.+...-..|+.++..+...+..+|+..+|..++..+
T Consensus 165 q~vl~al~~k~~s~~~l~~~~~l~~~~~~~v~Tnl~~~~~~~l~~~~ 211 (269)
T 3nxh_A 165 KQILNALIDRMSSASNIAKIDKIAEKASENVETNIRITEGLALQQIY 211 (269)
T ss_dssp HHHHHHHHHTTC--------CCHHHHHHTTSEECCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHhccEEECCCHHHHHHHHHHH
Confidence 45556666666665555678889999999999999999998887664
No 14
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.38A {Clostridium leptum}
Probab=25.59 E-value=45 Score=29.92 Aligned_cols=49 Identities=10% Similarity=0.164 Sum_probs=39.9
Q ss_pred HHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHHHHHHHHH
Q 047577 128 EYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAI 176 (194)
Q Consensus 128 ~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l 176 (194)
.|-.+|..++.+...-..|+.++..+...+..+|+..+|..++..+-.+
T Consensus 266 ~vL~Al~~K~~s~~~l~kl~~ll~~v~~~V~TnLs~~di~~La~~~~~~ 314 (403)
T 3pe5_A 266 DFMLQVLNKVKGTRDVGTLLTLLTKILPGVTTNISVNEMAGLAGGAISS 314 (403)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHGGGEEECCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCccchhhHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc
Confidence 5667777777666566789999999999999999999999998876443
No 15
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=23.88 E-value=55 Score=25.37 Aligned_cols=30 Identities=7% Similarity=0.173 Sum_probs=20.9
Q ss_pred HHHHhhcCCCCccchHHHHHHHHHHHhccC
Q 047577 132 LISHKLRPYEKSYHYIGLLKAVMRLSMTSL 161 (194)
Q Consensus 132 ~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L 161 (194)
.+...|..+...+.|..||..||...+..|
T Consensus 85 ~a~~~L~~~~~~~~Y~~~L~~Li~ea~~~l 114 (187)
T 3v6i_A 85 RVREALEALPQKPEWPEVVRKLALEALEAL 114 (187)
T ss_dssp HHHHHHHHGGGSTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHHHc
Confidence 334455556555779999999999865444
No 16
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=23.46 E-value=1.4e+02 Score=18.66 Aligned_cols=12 Identities=0% Similarity=-0.028 Sum_probs=5.7
Q ss_pred CHHHHHHHHHHH
Q 047577 122 SESDFMEYAELI 133 (194)
Q Consensus 122 Tk~DF~~~~~~L 133 (194)
|..+++.|-..|
T Consensus 47 t~~~i~~~~~~l 58 (103)
T 2oxo_A 47 TTKEIAAMLNGY 58 (103)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444555544444
No 17
>3r15_A Factor H binding protein; protein binding; 1.70A {Treponema denticola} PDB: 3qz0_A
Probab=23.39 E-value=1.1e+02 Score=22.04 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=28.7
Q ss_pred ccchHHHHHHHHHHHh-ccCChHhHHHHHHHHHHHH
Q 047577 143 SYHYIGLLKAVMRLSM-TSLKAADAKDVASSITAIA 177 (194)
Q Consensus 143 s~~Y~~fl~~lir~l~-~~L~~~~ikki~ssL~~l~ 177 (194)
..||-.|+.+|-+.+- .+|+++.+......+|...
T Consensus 23 k~~Yd~FI~~Le~~ak~~~~~Ad~V~~~v~~an~~~ 58 (93)
T 3r15_A 23 KAHYEKFINALENELKTRHIPAGAVIDMLAEINTEA 58 (93)
T ss_dssp HHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 5699999999999887 4599999988887777654
No 18
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.05 E-value=1e+02 Score=20.56 Aligned_cols=50 Identities=12% Similarity=0.305 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHHH
Q 047577 119 IPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEK 180 (194)
Q Consensus 119 ~P~Tk~DF~~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nEK 180 (194)
-|-|-++|-++-++|+.-= .=++.|++-= .+| ++++|.+.+.|..|.+|-
T Consensus 8 gpit~qeylevK~ALaaSe----------AkiQQLmkVN-~~l-s~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSE----------AKVQQLMKVN-SSL-SDELRKLQREIHKLQAEN 57 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHH----------HHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhH----------HHHHHHHHHh-Hhh-hHHHHHHHHHHHHHHhhh
Confidence 4899999999999998721 1122333211 122 678888888888887764
No 19
>3r2v_A PB2 C-terminal subunit; structural genomics, seattle structural genomics center for infectious disease, ssgcid, polymerase BASI H3N2, H1N1; 1.30A {Influenza a virus} PDB: 2vy6_A 3cw4_A 3l56_A 3kc6_A 3khw_A 2gmo_A 2jdq_D
Probab=20.89 E-value=23 Score=28.46 Aligned_cols=28 Identities=11% Similarity=0.323 Sum_probs=19.6
Q ss_pred CccchHHHHHHHH---HHHhccCChHhHHHH
Q 047577 142 KSYHYIGLLKAVM---RLSMTSLKAADAKDV 169 (194)
Q Consensus 142 ks~~Y~~fl~~li---r~l~~~L~~~~ikki 169 (194)
--.+|++|+..|+ |++...++..+|=|+
T Consensus 51 ~r~qYSGFvRtlfqQMRDvlgtf~T~QiIKL 81 (216)
T 3r2v_A 51 IRSQYSGFVRTLFQQMRDVLGTFDTTQIIKL 81 (216)
T ss_dssp THHHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHHccchhhhhhhh
Confidence 3568999999886 555566666666554
Done!