Query 047577
Match_columns 194
No_of_seqs 148 out of 227
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 22:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047577.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047577hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ucra_ a.4.5.45 (A:) Dissimil 45.8 4.2 0.00031 26.6 1.6 45 128-179 3-49 (74)
2 d1lr1a_ a.155.1.1 (A:) H1 prot 43.0 28 0.0021 21.4 5.3 36 153-188 12-47 (57)
3 d1ov9a_ a.155.1.1 (A:) H-NS-li 39.8 31 0.0022 20.1 4.8 31 154-184 12-42 (45)
4 d3d19a2 a.29.13.1 (A:145-274) 37.5 21 0.0015 25.1 4.5 36 124-159 82-118 (130)
5 d3d19a1 a.29.13.1 (A:11-144) U 32.1 28 0.002 24.6 4.5 37 123-159 83-121 (134)
6 d1h1oa2 a.3.1.4 (A:94-183) Cyt 29.9 17 0.0013 23.7 2.8 24 153-176 67-90 (90)
7 d3dbya2 a.29.13.1 (A:126-260) 28.7 27 0.002 24.7 3.9 37 123-159 79-116 (135)
8 d3dbya1 a.29.13.1 (A:5-125) Un 26.5 41 0.003 23.3 4.5 36 124-159 70-106 (121)
9 d1ls1a1 a.24.13.1 (A:1-88) Sig 26.4 13 0.00095 24.6 1.6 36 126-161 2-38 (88)
10 d1m70a2 a.3.1.4 (A:93-190) Cyt 25.4 19 0.0014 23.6 2.3 24 153-176 74-97 (98)
11 d1cnoa_ a.3.1.1 (A:) Cytochrom 23.9 30 0.0022 21.3 3.1 23 154-176 60-82 (86)
12 d2pq3a1 a.39.1.5 (A:3-75) Calm 22.1 76 0.0055 18.8 5.6 10 142-151 59-68 (73)
13 d1h1oa1 a.3.1.4 (A:12-93) Cyto 20.5 26 0.0019 21.4 2.2 23 154-176 53-75 (82)
No 1
>d1ucra_ a.4.5.45 (A:) Dissimilatory sulfite reductase DsvD {Desulfovibrio vulgaris [TaxId: 881]}
Probab=45.80 E-value=4.2 Score=26.64 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcC--CCCccchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHH
Q 047577 128 EYAELISHKLRP--YEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANE 179 (194)
Q Consensus 128 ~~~~~L~~kl~~--~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nE 179 (194)
+..++|...|.. -.++.+|- .|++.-++..-.|.|...+|.|.||
T Consensus 3 e~k~~Ive~l~~k~~~KsKfYf-------kDf~k~~Pd~k~R~vKK~~~~lV~e 49 (74)
T d1ucra_ 3 EAKQKVVDFLNSKSGSKSKFYF-------NDFTDLFPDMKQREVKKILTALVND 49 (74)
T ss_dssp HHHHHHHHHHSSHHHHSSCEEH-------HHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCcCceeH-------HHHHHHCCCccHHHHHHHHHHHhcc
Confidence 445677777743 35677775 3334335555555555556666664
No 2
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=42.99 E-value=28 Score=21.36 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=31.9
Q ss_pred HHHHHhccCChHhHHHHHHHHHHHHHHHHHHHHHHh
Q 047577 153 VMRLSMTSLKAADAKDVASSITAIANEKLKAEKEAA 188 (194)
Q Consensus 153 lir~l~~~L~~~~ikki~ssL~~l~nEK~K~EK~a~ 188 (194)
-+|-.+..|+.+++-.+---|+++.+|+..++.+..
T Consensus 12 sLRA~aRE~slE~LEe~lEKl~~Vv~Erreee~~~~ 47 (57)
T d1lr1a_ 12 TLRAQARESTLETLEEMLEKLEVVVNERREEESAAA 47 (57)
T ss_dssp HHHHHTTTSCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368889999999999999999999999999887643
No 3
>d1ov9a_ a.155.1.1 (A:) H-NS-like protein VicH {Vibrio cholerae [TaxId: 666]}
Probab=39.83 E-value=31 Score=20.15 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=27.3
Q ss_pred HHHHhccCChHhHHHHHHHHHHHHHHHHHHH
Q 047577 154 MRLSMTSLKAADAKDVASSITAIANEKLKAE 184 (194)
Q Consensus 154 ir~l~~~L~~~~ikki~ssL~~l~nEK~K~E 184 (194)
+|-++..|+.+++-.+---|+++..|+...|
T Consensus 12 LRA~~ReltlEQLee~LeKl~~vV~er~eae 42 (45)
T d1ov9a_ 12 LRAYARELTIEQLEEALDKLTTVVQERKEAE 42 (45)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHhh
Confidence 5888999999999999999999999995544
No 4
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=37.45 E-value=21 Score=25.10 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhcCC-CCccchHHHHHHHHHHHhc
Q 047577 124 SDFMEYAELISHKLRPY-EKSYHYIGLLKAVMRLSMT 159 (194)
Q Consensus 124 ~DF~~~~~~L~~kl~~~-~ks~~Y~~fl~~lir~l~~ 159 (194)
..|..|-..+-..+..+ -.+..||.|+.+++|..+-
T Consensus 82 ~~~~~FK~~~~~~~l~cki~s~~~Pll~dH~~REa~~ 118 (130)
T d3d19a2 82 ASLRDFKKTARDLIEQCKIKSIIHPLLADHVFREADR 118 (130)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhcccCchHHHHHHHHHHH
Confidence 46777777777765544 4699999999999999874
No 5
>d3d19a1 a.29.13.1 (A:11-144) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=32.07 E-value=28 Score=24.59 Aligned_cols=37 Identities=8% Similarity=0.050 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhcCCC-Ccc-chHHHHHHHHHHHhc
Q 047577 123 ESDFMEYAELISHKLRPYE-KSY-HYIGLLKAVMRLSMT 159 (194)
Q Consensus 123 k~DF~~~~~~L~~kl~~~~-ks~-~Y~~fl~~lir~l~~ 159 (194)
-..|..|-..|-..+..+. .+. .||.|+.+.+|..+-
T Consensus 83 ~~~~~~FK~~ll~~il~ckI~~~~~~Pll~dH~~REae~ 121 (134)
T d3d19a1 83 ATNIWGFKRKILGLILTCKLPGQNNFPLLVDHTSREADY 121 (134)
T ss_dssp HHHHHHHHHHHHHHHHTTCSTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhcCCCcchHHHHHHHHHHH
Confidence 3456667777777666666 454 799999999998764
No 6
>d1h1oa2 a.3.1.4 (A:94-183) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=29.95 E-value=17 Score=23.67 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.7
Q ss_pred HHHHHhccCChHhHHHHHHHHHHH
Q 047577 153 VMRLSMTSLKAADAKDVASSITAI 176 (194)
Q Consensus 153 lir~l~~~L~~~~ikki~ssL~~l 176 (194)
++..++..|+.+||+.|+..+..|
T Consensus 67 ~M~~~a~~lsd~ei~~la~Y~asL 90 (90)
T d1h1oa2 67 LMNQIAKNITVAQMKDVAAYLSSL 90 (90)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 578888999999999999988754
No 7
>d3dbya2 a.29.13.1 (A:126-260) Uncharacterized protein BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
Probab=28.72 E-value=27 Score=24.68 Aligned_cols=37 Identities=8% Similarity=-0.093 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhcCC-CCccchHHHHHHHHHHHhc
Q 047577 123 ESDFMEYAELISHKLRPY-EKSYHYIGLLKAVMRLSMT 159 (194)
Q Consensus 123 k~DF~~~~~~L~~kl~~~-~ks~~Y~~fl~~lir~l~~ 159 (194)
-..|..|-..|-..+..+ -.|..||.|+.+.+|..+-
T Consensus 79 ~~~~~~FK~~l~~~il~ckI~s~~~PLl~dH~~REa~~ 116 (135)
T d3dbya2 79 LKLFSHFLHEVEELELSNEVLSVLSARMADHMAREECY 116 (135)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCBSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchhhcccCchHHHHHHHHHHH
Confidence 345666766777755444 4689999999999999874
No 8
>d3dbya1 a.29.13.1 (A:5-125) Uncharacterized protein BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
Probab=26.47 E-value=41 Score=23.26 Aligned_cols=36 Identities=6% Similarity=-0.095 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhcCC-CCccchHHHHHHHHHHHhc
Q 047577 124 SDFMEYAELISHKLRPY-EKSYHYIGLLKAVMRLSMT 159 (194)
Q Consensus 124 ~DF~~~~~~L~~kl~~~-~ks~~Y~~fl~~lir~l~~ 159 (194)
..|..|-..|...+..+ -.+..||.|+.+.+|..|-
T Consensus 70 ~~~~~FK~~l~~~il~cki~~~~~Pll~dH~~REa~~ 106 (121)
T d3dbya1 70 KEIRAFKLNIIQKQLEGKITIHFTPTFINHMVNEVEE 106 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCCBSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhcccCchHHHHHHHHHHH
Confidence 44566666666655554 3689999999999998874
No 9
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=26.42 E-value=13 Score=24.60 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhcCCCCccc-hHHHHHHHHHHHhccC
Q 047577 126 FMEYAELISHKLRPYEKSYH-YIGLLKAVMRLSMTSL 161 (194)
Q Consensus 126 F~~~~~~L~~kl~~~~ks~~-Y~~fl~~lir~l~~~L 161 (194)
|+.|++.|...|..+.++.. .-.=+.+++|+++..|
T Consensus 2 F~~L~~~l~~a~~~l~g~~~i~E~~i~~~l~eir~AL 38 (88)
T d1ls1a1 2 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRAL 38 (88)
T ss_dssp CHHHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 78899999999988876553 3357777777777654
No 10
>d1m70a2 a.3.1.4 (A:93-190) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}
Probab=25.37 E-value=19 Score=23.60 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.8
Q ss_pred HHHHHhccCChHhHHHHHHHHHHH
Q 047577 153 VMRLSMTSLKAADAKDVASSITAI 176 (194)
Q Consensus 153 lir~l~~~L~~~~ikki~ssL~~l 176 (194)
++..++..|+.+||+.|++.|..|
T Consensus 74 ~M~~~~~~lsd~di~~la~YiasL 97 (98)
T d1m70a2 74 IMRGVAAKLSNKDIEALSSYIQGL 97 (98)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHTC
T ss_pred hHHHHHHhCCHHHHHHHHHHHHHc
Confidence 356777899999999999988654
No 11
>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]}
Probab=23.95 E-value=30 Score=21.28 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=18.8
Q ss_pred HHHHhccCChHhHHHHHHHHHHH
Q 047577 154 MRLSMTSLKAADAKDVASSITAI 176 (194)
Q Consensus 154 ir~l~~~L~~~~ikki~ssL~~l 176 (194)
+......|+.+||+.|+..|..|
T Consensus 60 m~~~~~~Lsd~di~~laaYi~sl 82 (86)
T d1cnoa_ 60 MQGQATALSDADIANLAAYYASN 82 (86)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHS
T ss_pred hHHHHccCCHHHHHHHHHHHHhC
Confidence 45556789999999999998765
No 12
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}
Probab=22.14 E-value=76 Score=18.79 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=4.9
Q ss_pred CccchHHHHH
Q 047577 142 KSYHYIGLLK 151 (194)
Q Consensus 142 ks~~Y~~fl~ 151 (194)
....|..|+.
T Consensus 59 g~I~f~eF~~ 68 (73)
T d2pq3a1 59 GTIDFPEFLT 68 (73)
T ss_dssp SEEEHHHHHH
T ss_pred CeEeHHHHHH
Confidence 3445555544
No 13
>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=20.52 E-value=26 Score=21.44 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=18.5
Q ss_pred HHHHhccCChHhHHHHHHHHHHH
Q 047577 154 MRLSMTSLKAADAKDVASSITAI 176 (194)
Q Consensus 154 ir~l~~~L~~~~ikki~ssL~~l 176 (194)
+......|+.+||..|+..|..|
T Consensus 53 M~~~~~~LSd~eI~~la~Yi~sl 75 (82)
T d1h1oa1 53 MWPVAQALDSAKITALADYFNAQ 75 (82)
T ss_dssp THHHHHTCCHHHHHHHHHHHHHC
T ss_pred chHHHhhCCHHHHHHHHHHHHhC
Confidence 44445689999999999998765
Done!