BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047581
         (308 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B8H8L3|ARC_ARTCA Proteasome-associated ATPase OS=Arthrobacter chlorophenolicus
           (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=arc
           PE=3 SV=1
          Length = 583

 Score = 33.5 bits (75), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 170 SFGTRAKFDERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNLQWKFRGNQTVLVDK 229
           S   RA     +R  ++ ++S  L  K PE+     G    H+R +  + R   +   D 
Sbjct: 284 SLAARAA----ERSGNVDLKSYFLNIKGPELLDKYVGETERHIRLIFARAREKAS---DG 336

Query: 230 QPVQVFWDVHDWLFSTPGTG 249
            PV VF+D  D LF T GTG
Sbjct: 337 SPVVVFFDEMDSLFRTRGTG 356


>sp|A0JWY3|ARC_ARTS2 Proteasome-associated ATPase OS=Arthrobacter sp. (strain FB24)
           GN=arc PE=3 SV=1
          Length = 594

 Score = 33.1 bits (74), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 170 SFGTRAKFDERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNLQWKFRGNQTVLVDK 229
           S   RA     +R  ++ ++S  L  K PE+     G    H+R +  + R   +   D 
Sbjct: 295 SLAARAA----ERTGNVDLKSYFLNIKGPELLDKYVGETERHIRLIFSRAREKAS---DG 347

Query: 230 QPVQVFWDVHDWLFSTPGTG 249
            PV VF+D  D LF T GTG
Sbjct: 348 SPVVVFFDEMDSLFRTRGTG 367


>sp|C6KTD2|HKNMT_PLAF7 Putative histone-lysine N-methyltransferase PFF1440w OS=Plasmodium
            falciparum (isolate 3D7) GN=PFF1440w PE=3 SV=1
          Length = 6753

 Score = 32.0 bits (71), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 16/88 (18%)

Query: 68   LEGDYHYSCKVDLKPWHFWSKKGYKSLDVEGNQVEIYWDLRSAKFSGGPEPCGDFYVALV 127
            ++G  HYSC +    +   S+   K +D E N ++IYW ++          C   Y A  
Sbjct: 1400 MKGHDHYSCSLSSAIYDMCSEAEKKEID-ENNCIDIYWGIKCFT-------CEKKYHANC 1451

Query: 128  WEEEVV--------LLLGDYKKKAYKRT 147
             E++V+        +L+ +YKK  YK +
Sbjct: 1452 LEDDVLITKWFDKNILMKEYKKFIYKNS 1479


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.134    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,795,112
Number of Sequences: 539616
Number of extensions: 5342460
Number of successful extensions: 14519
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 14470
Number of HSP's gapped (non-prelim): 52
length of query: 308
length of database: 191,569,459
effective HSP length: 117
effective length of query: 191
effective length of database: 128,434,387
effective search space: 24530967917
effective search space used: 24530967917
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)