Query 047581
Match_columns 308
No_of_seqs 124 out of 134
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 12:28:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05910 DUF868: Plant protein 100.0 2E-119 4E-124 842.1 32.9 271 27-307 1-274 (274)
2 cd00110 LamG Laminin G domain; 90.5 3.5 7.6E-05 33.3 9.7 81 119-231 45-127 (151)
3 PF05910 DUF868: Plant protein 88.3 2.4 5.3E-05 41.0 8.3 74 35-116 143-223 (274)
4 smart00282 LamG Laminin G doma 66.4 66 0.0014 25.8 9.0 30 179-213 60-89 (135)
5 PF02210 Laminin_G_2: Laminin 66.2 22 0.00048 27.5 6.0 49 178-231 51-102 (128)
6 PF14099 Polysacc_lyase: Polys 64.3 9.6 0.00021 33.8 4.1 36 178-213 149-184 (224)
7 PRK00051 hisI phosphoribosyl-A 53.9 54 0.0012 28.6 6.7 67 120-205 12-87 (125)
8 COG0139 HisI Phosphoribosyl-AM 51.9 46 0.00099 28.6 5.8 73 120-205 16-91 (111)
9 PF06905 FAIM1: Fas apoptotic 49.3 86 0.0019 28.7 7.6 43 180-228 14-58 (177)
10 PF06439 DUF1080: Domain of Un 40.3 65 0.0014 27.2 5.1 36 178-218 124-159 (185)
11 PF05506 DUF756: Domain of unk 39.7 89 0.0019 24.4 5.5 19 89-107 46-65 (89)
12 PF05506 DUF756: Domain of unk 37.9 1.4E+02 0.003 23.3 6.3 35 209-243 35-73 (89)
13 PF00054 Laminin_G_1: Laminin 37.6 2.3E+02 0.005 23.2 10.3 49 178-231 50-101 (131)
14 KOG0289 mRNA splicing factor [ 32.6 39 0.00085 35.3 3.0 44 101-145 370-425 (506)
15 KOG0273 Beta-transducin family 28.3 51 0.0011 34.7 3.0 51 212-262 279-351 (524)
16 TIGR02148 Fibro_Slime fibro-sl 26.0 63 0.0014 26.8 2.6 20 196-215 26-45 (90)
17 KOG2463 Predicted RNA-binding 24.6 54 0.0012 33.2 2.3 25 200-224 273-298 (376)
18 PRK02759 bifunctional phosphor 23.3 2.7E+02 0.0058 26.2 6.5 66 121-205 15-89 (203)
19 PLN02346 histidine biosynthesi 22.1 2.3E+02 0.005 27.8 6.0 31 121-151 53-85 (271)
20 smart00210 TSPN Thrombospondin 21.8 1.5E+02 0.0032 26.1 4.3 44 179-230 115-158 (184)
21 PF12101 DUF3577: Protein of u 20.4 2E+02 0.0044 25.5 4.8 12 200-211 117-128 (137)
22 PF10694 DUF2500: Protein of u 20.2 1.5E+02 0.0033 24.3 3.8 39 152-191 35-73 (110)
No 1
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=100.00 E-value=1.9e-119 Score=842.08 Aligned_cols=271 Identities=54% Similarity=0.961 Sum_probs=246.4
Q ss_pred CCCcceEEEEEEeeecCeeeEEEEEecCCCCCCeeEEEEcCCCCCccceeeecccccceeeecCeeeEEecCCeEEEEec
Q 047581 27 KTAQSTVTCGYQTHIAGYLRNVTVLWCKNLMNHSLSIMINSLEGDYHYSCKVDLKPWHFWSKKGYKSLDVEGNQVEIYWD 106 (308)
Q Consensus 27 ~s~q~~vT~vY~t~L~g~~~litvTWsk~l~g~~Lsv~i~~~~~~~~~~ckv~lkPw~fwkkkGsK~f~~~~~~V~v~WD 106 (308)
+++||+|||||||+|+|++++||||||||+|||||+|+|+++.++++++||++++||+||||||||+|+++|++|+||||
T Consensus 1 ~s~q~~vT~vY~~~l~g~~~litvTWsk~~~g~~Lsv~v~~~~~~~~~~~k~~~~p~~fwkkkGsKsf~~~~~~v~v~WD 80 (274)
T PF05910_consen 1 PSPQNSVTCVYQTKLSGKPRLITVTWSKNLLGQSLSVSVDDASGSSSSSCKVDLKPWLFWKKKGSKSFEVDGPKVDVFWD 80 (274)
T ss_pred CCCCceEEEEEEEEecCCceEEEEEEeCCccCCeEEEEEeCccccccccccccCccceeEecCCccccccCCceEEEEeC
Confidence 58999999999999999999999999999999999999999887789999999999999999999999999999999999
Q ss_pred CCCcccCCCCCcCcCcEEEEEECceEEEEecCcchhHHHhhhcCCcccceeeeeeeeeEeeeeEEEEeEEEcCCCceEEE
Q 047581 107 LRSAKFSGGPEPCGDFYVALVWEEEVVLLLGDYKKKAYKRTKARPALVEALQYYKKENVFAKKSFGTRAKFDERKREHDI 186 (308)
Q Consensus 107 Ls~Akf~~gPEP~sgfYVAVV~d~EvvLlLGDl~kea~~r~~~~p~~~~a~LvsRrEhv~G~k~y~TkA~F~~~g~eHeI 186 (308)
||+|||+++|||++|||||||+|+|||||||||++|||+|++++|++.+++||+|||||||++.|+|||||+|+|++|||
T Consensus 81 Ls~Akf~s~PEP~sgfYVavv~d~EvvLllGDl~~ea~~rt~~~~~~~~~~LvsRrEhv~G~~~~~Tka~F~e~G~~HeI 160 (274)
T PF05910_consen 81 LSSAKFGSGPEPVSGFYVAVVVDGEVVLLLGDLKKEAYKRTKSRPSPSEAVLVSRREHVFGKKVYSTKARFCEGGKEHEI 160 (274)
T ss_pred ccccccCCCCCCCCccEEEEEECCEEEEEecCchhHHHhhccCCCCccceeEEEEEEEEEEEEEEeeEEEEcCCCcEEEE
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred EEEe--cCCCCCCCcEEEEEcCeEEEEEeeeccccccceEEEeCCeeEEEEEeeeeeccC-CCCCccEEEEEecCCCCCC
Q 047581 187 VVES--STLGPKDPEMWISIDGIVLVHVRNLQWKFRGNQTVLVDKQPVQVFWDVHDWLFS-TPGTGHGLFIFKPNAPEIS 263 (308)
Q Consensus 187 ~Iec--~~~G~~dp~L~V~VDgk~v~qVKrL~WkFRGNqtI~vdg~~V~V~WDVHdWlF~-~~~~g~AVFmFr~~~~~~~ 263 (308)
+||| ..+|.+||+|||+||||+|||||||||||||||||+|||+|||||||||||||+ ++++|||||||||+++.+.
T Consensus 161 ~Iec~~~~~g~~dp~l~V~VDgk~v~~VkrL~WkFRGNqti~vdg~~V~V~WDVHdWlF~~~~~~~~AVFmFr~~~~~e~ 240 (274)
T PF05910_consen 161 SIECGGETGGPKDPELWVSVDGKKVVQVKRLRWKFRGNQTIFVDGLPVQVFWDVHDWLFNNGPGSGHAVFMFRPRSGLES 240 (274)
T ss_pred EEEEeccCCCCCCceEEEEECCEEEEEEEEeeecccCceEEEECCeEEEEEEEhhhhhhccCCCCCceEEEEEecCCccc
Confidence 9999 567788999999999999999999999999999999999999999999999998 4567899999999976543
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccCCCCCCCCceEEEEEEecc
Q 047581 264 ESEGSSQGGGDSDNSNGSKYHSSRNSSRSNTAPEFCLFLYAWKI 307 (308)
Q Consensus 264 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~f~l~LyAwk~ 307 (308)
. .+.. . .. ...++.+++.+.++.||||||||||+
T Consensus 241 ~--~~~~--~--~~----~~~~~~~~~~~~~~~gFsLllyAwK~ 274 (274)
T PF05910_consen 241 R--LWLE--E--SS----SSSSSRFSSSSSSGSGFSLLLYAWKN 274 (274)
T ss_pred c--cccc--c--cc----cccccccccccCCCCCEEEEEEEEcC
Confidence 1 1111 0 11 11222333344568999999999996
No 2
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=90.51 E-value=3.5 Score=33.28 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=54.2
Q ss_pred CcCcEEEEEECceEEEEecCcchhHHHhhhcCCcccceeeeeeeeeEeeeeEEEEeEEEcCCCceEEEEEEecCCCCCCC
Q 047581 119 CGDFYVALVWEEEVVLLLGDYKKKAYKRTKARPALVEALQYYKKENVFAKKSFGTRAKFDERKREHDIVVESSTLGPKDP 198 (308)
Q Consensus 119 ~sgfYVAVV~d~EvvLlLGDl~kea~~r~~~~p~~~~a~LvsRrEhv~G~k~y~TkA~F~~~g~eHeI~Iec~~~G~~dp 198 (308)
...|+.+-+.++.+.+.+....+. ..+.+..++ ..|+.|.|.|+... .
T Consensus 45 ~~~~~~l~l~~g~l~~~~~~g~~~--------------------------~~~~~~~~v-~dg~Wh~v~i~~~~-----~ 92 (151)
T cd00110 45 GGDFLALELEDGRLVLRYDLGSGS--------------------------LVLSSKTPL-NDGQWHSVSVERNG-----R 92 (151)
T ss_pred CCCEEEEEEECCEEEEEEcCCccc--------------------------EEEEccCcc-CCCCEEEEEEEECC-----C
Confidence 556766666788888887764110 122222233 56789999999873 3
Q ss_pred cEEEEEcCeEEEEEeeecc--ccccceEEEeCCee
Q 047581 199 EMWISIDGIVLVHVRNLQW--KFRGNQTVLVDKQP 231 (308)
Q Consensus 199 ~L~V~VDgk~v~qVKrL~W--kFRGNqtI~vdg~~ 231 (308)
.+.+.|||+.+++...-.. ....+..|++.|.|
T Consensus 93 ~~~l~VD~~~~~~~~~~~~~~~~~~~~~~~iGg~~ 127 (151)
T cd00110 93 SVTLSVDGERVVESGSPGGSALLNLDGPLYLGGLP 127 (151)
T ss_pred EEEEEECCccEEeeeCCCCceeecCCCCeEEcCCC
Confidence 7999999997776655444 35666677787765
No 3
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=88.28 E-value=2.4 Score=41.03 Aligned_cols=74 Identities=22% Similarity=0.416 Sum_probs=48.5
Q ss_pred EEEEee--e--cCeeeEEEEEecCCCCC---CeeEEEEcCCCCCccceeeecccccceeeecCeeeEEecCCeEEEEecC
Q 047581 35 CGYQTH--I--AGYLRNVTVLWCKNLMN---HSLSIMINSLEGDYHYSCKVDLKPWHFWSKKGYKSLDVEGNQVEIYWDL 107 (308)
Q Consensus 35 ~vY~t~--L--~g~~~litvTWsk~l~g---~~Lsv~i~~~~~~~~~~ckv~lkPw~fwkkkGsK~f~~~~~~V~v~WDL 107 (308)
.+|.|+ + .|+..-|.|-=....-| ..|.|.||+- -..+| | .|=||=||+.++.++|-.|+|+||+
T Consensus 143 ~~~~Tka~F~e~G~~HeI~Iec~~~~~g~~dp~l~V~VDgk-----~v~~V--k-rL~WkFRGNqti~vdg~~V~V~WDV 214 (274)
T PF05910_consen 143 KVYSTKARFCEGGKEHEISIECGGETGGPKDPELWVSVDGK-----KVVQV--K-RLRWKFRGNQTIFVDGLPVQVFWDV 214 (274)
T ss_pred EEEeeEEEEcCCCcEEEEEEEEeccCCCCCCceEEEEECCE-----EEEEE--E-EeeecccCceEEEECCeEEEEEEEh
Confidence 455444 4 35555555554222232 4788888852 11122 2 4568889999999999999999999
Q ss_pred CCcccCCCC
Q 047581 108 RSAKFSGGP 116 (308)
Q Consensus 108 s~Akf~~gP 116 (308)
..==|+++|
T Consensus 215 HdWlF~~~~ 223 (274)
T PF05910_consen 215 HDWLFNNGP 223 (274)
T ss_pred hhhhhccCC
Confidence 998887433
No 4
>smart00282 LamG Laminin G domain.
Probab=66.44 E-value=66 Score=25.82 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=22.7
Q ss_pred CCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEe
Q 047581 179 ERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVR 213 (308)
Q Consensus 179 ~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVK 213 (308)
..|+.|.|.|+... -.+.+.|||+....++
T Consensus 60 ~dg~WH~v~i~~~~-----~~~~l~VD~~~~~~~~ 89 (135)
T smart00282 60 NDGQWHRVAVERNG-----RRVTLSVDGENPVSGE 89 (135)
T ss_pred CCCCEEEEEEEEeC-----CEEEEEECCCccccEE
Confidence 45689999999863 3799999997655443
No 5
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=66.18 E-value=22 Score=27.49 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=36.3
Q ss_pred cCCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeeeccc--cc-cceEEEeCCee
Q 047581 178 DERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNLQWK--FR-GNQTVLVDKQP 231 (308)
Q Consensus 178 ~~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL~Wk--FR-GNqtI~vdg~~ 231 (308)
-..|+.|.|.|.... ..+.+.||+....+....... .- ....|++.|.|
T Consensus 51 ~~dg~wh~v~i~~~~-----~~~~l~Vd~~~~~~~~~~~~~~~~~~~~~~l~iGg~~ 102 (128)
T PF02210_consen 51 LNDGQWHKVSISRDG-----NRVTLTVDGQSVSSESLPSSSSDSLDPDGSLYIGGLP 102 (128)
T ss_dssp STSSSEEEEEEEEET-----TEEEEEETTSEEEEEESSSTTHHCBESEEEEEESSTT
T ss_pred ccccceeEEEEEEee-----eeEEEEecCccceEEeccccceecccCCCCEEEeccc
Confidence 367889999998873 369999999999999888775 22 33346666653
No 6
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=64.34 E-value=9.6 Score=33.85 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=28.7
Q ss_pred cCCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEe
Q 047581 178 DERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVR 213 (308)
Q Consensus 178 ~~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVK 213 (308)
...|+.|+|+|+..-+...+..+.|.+||+.|+..+
T Consensus 149 ~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~ 184 (224)
T PF14099_consen 149 VERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYK 184 (224)
T ss_dssp S-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEE
T ss_pred cCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEe
Confidence 367999999999886544778999999999888765
No 7
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=53.86 E-value=54 Score=28.64 Aligned_cols=67 Identities=13% Similarity=0.249 Sum_probs=42.8
Q ss_pred cCcEEEEEEC--ceEEEEecCcchhHHHhhhcCCcccceeeeeeeeeEeeeeEEEEeEEEcCCC-------ceEEEEEEe
Q 047581 120 GDFYVALVWE--EEVVLLLGDYKKKAYKRTKARPALVEALQYYKKENVFAKKSFGTRAKFDERK-------REHDIVVES 190 (308)
Q Consensus 120 sgfYVAVV~d--~EvvLlLGDl~kea~~r~~~~p~~~~a~LvsRrEhv~G~k~y~TkA~F~~~g-------~eHeI~Iec 190 (308)
.|-.-|||-| ..-||+||=|.+||.++|-..- .+...||. |-+.--+| +..+|.++|
T Consensus 12 ~GLipaivqd~~tg~VLMlaymn~eAl~~Tl~tg---~~~y~SRS-----------R~~lW~KGetSG~~q~v~~i~~DC 77 (125)
T PRK00051 12 DGLVPAIAQDAETGEVLMVAWMNEEALAKTLETG---RAHYWSRS-----------RQKLWRKGETSGHVQKVHEVRLDC 77 (125)
T ss_pred CCcEEEEEEECCCCCEEEEEEcCHHHHHHHHhcC---cEEEEeCc-----------cCcccCCCCCcCCeEEEEEEEecC
Confidence 4778888887 5678999999999999876543 23444441 11232333 446888888
Q ss_pred cCCCCCCCcEEEEEc
Q 047581 191 STLGPKDPEMWISID 205 (308)
Q Consensus 191 ~~~G~~dp~L~V~VD 205 (308)
+. ..|.+.|+
T Consensus 78 D~-----D~Ll~~V~ 87 (125)
T PRK00051 78 DG-----DAVLLKVE 87 (125)
T ss_pred CC-----CEEEEEEE
Confidence 73 24555553
No 8
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=51.89 E-value=46 Score=28.59 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=44.2
Q ss_pred cCcEEEEEECceE--EEEecCcchhHHHhhhcCCcccceeeeeeeeeEeeeeEEEEeEEEcC-CCceEEEEEEecCCCCC
Q 047581 120 GDFYVALVWEEEV--VLLLGDYKKKAYKRTKARPALVEALQYYKKENVFAKKSFGTRAKFDE-RKREHDIVVESSTLGPK 196 (308)
Q Consensus 120 sgfYVAVV~d~Ev--vLlLGDl~kea~~r~~~~p~~~~a~LvsRrEhv~G~k~y~TkA~F~~-~g~eHeI~Iec~~~G~~ 196 (308)
.|-+.|||-|.+- ||+||=|.+||++||-..- .+...||.-+= .+ +|-.=.+ --+.++|.++|+.
T Consensus 16 ~gLvpaIvQd~~t~eVLMlaymN~eAl~kTleTg---~~~y~SRSR~~----lW-~KGetSG~~q~v~~i~~DCD~---- 83 (111)
T COG0139 16 DGLVPAIVQDAETGEVLMLAYMNEEALAKTLETG---EAHYYSRSRQE----LW-TKGETSGHTQKVVEIRLDCDG---- 83 (111)
T ss_pred CCeEEEEEEecCCCcEEEEEecCHHHHHHHHhcC---eEEEEEcchhh----he-ccccccCceEEEEEEEcCCCC----
Confidence 7889999987654 7999999999999986543 23444443221 11 1111011 1145889999973
Q ss_pred CCcEEEEEc
Q 047581 197 DPEMWISID 205 (308)
Q Consensus 197 dp~L~V~VD 205 (308)
..|.+.|+
T Consensus 84 -Dall~~V~ 91 (111)
T COG0139 84 -DALLLLVE 91 (111)
T ss_pred -CEEEEEEE
Confidence 24555554
No 9
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=49.27 E-value=86 Score=28.69 Aligned_cols=43 Identities=30% Similarity=0.550 Sum_probs=25.8
Q ss_pred CCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeeeccccc--cceEEEeC
Q 047581 180 RKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNLQWKFR--GNQTVLVD 228 (308)
Q Consensus 180 ~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL~WkFR--GNqtI~vd 228 (308)
+...|.|.+|=.+ .-....|+||||.+++ | .|.|+ |-++-.|+
T Consensus 14 ~d~~h~IefeHgt---ttGkrvI~VDGkei~r-~--~wmfklvg~e~F~ig 58 (177)
T PF06905_consen 14 SDGVHKIEFEHGT---TTGKRVIKVDGKEIVR-R--DWMFKLVGKETFTIG 58 (177)
T ss_dssp TTEEEEEEEEE-T---TT--EEEEETTEEEEE-E-----S---EEEEEEET
T ss_pred CCCEEEEEEEeCC---ccCeEEEEECCcEEEE-e--cceeeeCcccEEEEC
Confidence 4678999999763 2237999999997776 3 57776 55555554
No 10
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=40.25 E-value=65 Score=27.18 Aligned_cols=36 Identities=3% Similarity=0.029 Sum_probs=28.6
Q ss_pred cCCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeeeccc
Q 047581 178 DERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNLQWK 218 (308)
Q Consensus 178 ~~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL~Wk 218 (308)
...++.|.|.|+|.+ +.+.|.|||+.|+......=.
T Consensus 124 ~~~~~W~~~~I~~~g-----~~i~v~vnG~~v~~~~d~~~~ 159 (185)
T PF06439_consen 124 IPPGEWNTVRIVVKG-----NRITVWVNGKPVADFTDPSFP 159 (185)
T ss_dssp --TTSEEEEEEEEET-----TEEEEEETTEEEEEEETTSHH
T ss_pred CCCCceEEEEEEEEC-----CEEEEEECCEEEEEEEcCCCC
Confidence 477899999999973 479999999999998876543
No 11
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=39.68 E-value=89 Score=24.36 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=14.4
Q ss_pred cCeeeEEe-cCCeEEEEecC
Q 047581 89 KGYKSLDV-EGNQVEIYWDL 107 (308)
Q Consensus 89 kGsK~f~~-~~~~V~v~WDL 107 (308)
.+..++.+ .|..+.+.|||
T Consensus 46 ~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 46 GGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCCEEEEECCCCEEEEEEee
Confidence 44566666 47889999999
No 12
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=37.88 E-value=1.4e+02 Score=23.26 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=25.1
Q ss_pred EEEEeeeccccccceEEEeC-CeeEEEEEee---eeecc
Q 047581 209 LVHVRNLQWKFRGNQTVLVD-KQPVQVFWDV---HDWLF 243 (308)
Q Consensus 209 v~qVKrL~WkFRGNqtI~vd-g~~V~V~WDV---HdWlF 243 (308)
.++|....=.-.+.+++.|. |..+++.|++ |+|+.
T Consensus 35 ~~~v~~~~y~~~~~~~~~v~ag~~~~~~w~l~~s~gwYD 73 (89)
T PF05506_consen 35 TFTVYDNAYGGGGPWTYTVAAGQTVSLTWPLAASGGWYD 73 (89)
T ss_pred EEEEEeCCcCCCCCEEEEECCCCEEEEEEeecCCCCcEE
Confidence 34444433333567888886 8999999998 88876
No 13
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=37.58 E-value=2.3e+02 Score=23.23 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=33.4
Q ss_pred cCCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeee-cc--ccccceEEEeCCee
Q 047581 178 DERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNL-QW--KFRGNQTVLVDKQP 231 (308)
Q Consensus 178 ~~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL-~W--kFRGNqtI~vdg~~ 231 (308)
-..|+.|.|.++-.. -...++||+..++...-- .= ...-+..|+|.|+|
T Consensus 50 i~dg~wh~v~~~r~~-----~~~~L~Vd~~~~~~~~s~~~~~~~l~~~~~lyvGG~p 101 (131)
T PF00054_consen 50 INDGKWHTVSVSRNG-----RNGSLSVDGEEVVTGESPSGATQSLDVDGPLYVGGLP 101 (131)
T ss_dssp TTSSSEEEEEEEEET-----TEEEEEETTSEEEEEEECSSSSSSCEECSEEEESSSS
T ss_pred cCCCcceEEEEEEcC-----cEEEEEECCccceeeecCCccccccccccCEEEccCC
Confidence 578899999998753 379999999998444332 11 12333448888887
No 14
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=32.63 E-value=39 Score=35.28 Aligned_cols=44 Identities=36% Similarity=0.650 Sum_probs=29.6
Q ss_pred EEEEecCCC----cccCCCCCcC-------cCcEEEEEECceEEEEecCcch-hHHH
Q 047581 101 VEIYWDLRS----AKFSGGPEPC-------GDFYVALVWEEEVVLLLGDYKK-KAYK 145 (308)
Q Consensus 101 V~v~WDLs~----Akf~~gPEP~-------sgfYVAVV~d~EvvLlLGDl~k-ea~~ 145 (308)
+-=+|||++ |||++-.-|+ .|||+|+-+|.-- ..|=||+| ++|+
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFK 425 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccc
Confidence 344799986 8998644443 6999999996552 33458876 4443
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=28.31 E-value=51 Score=34.72 Aligned_cols=51 Identities=20% Similarity=0.452 Sum_probs=36.0
Q ss_pred EeeeccccccceEEEeCCeeEEEEEeee------------------eeccCC----CCCccEEEEEecCCCCC
Q 047581 212 VRNLQWKFRGNQTVLVDKQPVQVFWDVH------------------DWLFST----PGTGHGLFIFKPNAPEI 262 (308)
Q Consensus 212 VKrL~WkFRGNqtI~vdg~~V~V~WDVH------------------dWlF~~----~~~g~AVFmFr~~~~~~ 262 (308)
|-+|+||=+||..+--+-..+-|+||+| +|.-+. ++.-.++|++|.....+
T Consensus 279 I~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P 351 (524)
T KOG0273|consen 279 IFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRP 351 (524)
T ss_pred eEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCc
Confidence 5689999999998886666788999995 454332 23345677777666443
No 16
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=25.98 E-value=63 Score=26.77 Aligned_cols=20 Identities=20% Similarity=0.576 Sum_probs=16.0
Q ss_pred CCCcEEEEEcCeEEEEEeee
Q 047581 196 KDPEMWISIDGIVLVHVRNL 215 (308)
Q Consensus 196 ~dp~L~V~VDgk~v~qVKrL 215 (308)
+|..+||-||||.|+-+=-+
T Consensus 26 GDDDvWVFIn~kLv~DlGG~ 45 (90)
T TIGR02148 26 GDDDVWVFINNKLVVDIGGQ 45 (90)
T ss_pred cCCeEEEEECCEEEEEccCc
Confidence 37789999999999876533
No 17
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=24.56 E-value=54 Score=33.22 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=19.9
Q ss_pred EEEEEcCeEEEEEe-eeccccccceE
Q 047581 200 MWISIDGIVLVHVR-NLQWKFRGNQT 224 (308)
Q Consensus 200 L~V~VDgk~v~qVK-rL~WkFRGNqt 224 (308)
..|.=||..-+|.| |.+||=||+|-
T Consensus 273 Vsv~~dG~~~~h~k~r~~~n~RG~~Y 298 (376)
T KOG2463|consen 273 VSVDEDGNGQTHFKKRFQWNNRGLQY 298 (376)
T ss_pred EEecCCCceeEEeecccccccCccee
Confidence 33444677889998 99999999994
No 18
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=23.32 E-value=2.7e+02 Score=26.15 Aligned_cols=66 Identities=15% Similarity=0.290 Sum_probs=41.6
Q ss_pred CcEEEEEEC--ceEEEEecCcchhHHHhhhcCCcccceeeeeeeeeEeeeeEEEEeEEEcCCC-------ceEEEEEEec
Q 047581 121 DFYVALVWE--EEVVLLLGDYKKKAYKRTKARPALVEALQYYKKENVFAKKSFGTRAKFDERK-------REHDIVVESS 191 (308)
Q Consensus 121 gfYVAVV~d--~EvvLlLGDl~kea~~r~~~~p~~~~a~LvsRrEhv~G~k~y~TkA~F~~~g-------~eHeI~Iec~ 191 (308)
|-.-|||-| .--||+||=|.+||+++|-... .+...||. |-+.--+| +..+|.++|+
T Consensus 15 gLip~ivqd~~tg~vLml~ymn~eal~~Tl~tg---~~~~~SRS-----------r~~lW~KGetSG~~q~v~~i~~DCD 80 (203)
T PRK02759 15 GLIPAIVQDALTGEVLMLGYMNREALEKTLETG---EVTFFSRS-----------KQRLWTKGETSGNTQKVVSIRLDCD 80 (203)
T ss_pred CcEEEEEEECCCCCEEEEEecCHHHHHHHHhcC---cEEEEeCC-----------CCcccCCCCCCCCeEEEEEEEecCC
Confidence 667778876 4468999999999999986544 23444442 11222333 4568888887
Q ss_pred CCCCCCCcEEEEEc
Q 047581 192 TLGPKDPEMWISID 205 (308)
Q Consensus 192 ~~G~~dp~L~V~VD 205 (308)
. ..|.|.|+
T Consensus 81 ~-----D~ll~~V~ 89 (203)
T PRK02759 81 N-----DTLLVLVE 89 (203)
T ss_pred C-----CeEEEEEE
Confidence 3 24555554
No 19
>PLN02346 histidine biosynthesis bifunctional protein hisIE
Probab=22.12 E-value=2.3e+02 Score=27.79 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=23.2
Q ss_pred CcEEEEEEC--ceEEEEecCcchhHHHhhhcCC
Q 047581 121 DFYVALVWE--EEVVLLLGDYKKKAYKRTKARP 151 (308)
Q Consensus 121 gfYVAVV~d--~EvvLlLGDl~kea~~r~~~~p 151 (308)
|---|||.| ..-||+||=|.+||+++|-...
T Consensus 53 gLipaivQd~~tg~VLml~ymn~eal~~Tl~tg 85 (271)
T PLN02346 53 GLAVAIAQNVDTGAILMQGFANREAISATISSR 85 (271)
T ss_pred CCEEEEEEECCCCCEEEEEecCHHHHHHHHhcC
Confidence 555556654 5678999999999999986543
No 20
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=21.79 E-value=1.5e+02 Score=26.09 Aligned_cols=44 Identities=11% Similarity=0.000 Sum_probs=29.7
Q ss_pred CCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeeeccccccceEEEeCCe
Q 047581 179 ERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNLQWKFRGNQTVLVDKQ 230 (308)
Q Consensus 179 ~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL~WkFRGNqtI~vdg~ 230 (308)
..|+.|-|.|..... .+.+.||++.+-.+. |...+. +.+..+|.
T Consensus 115 ~dg~WH~lal~V~~~-----~v~LyvDC~~~~~~~-l~~~~~--~~~~~~g~ 158 (184)
T smart00210 115 ADGQWHKLALSVSGS-----SATLYVDCNEIDSRP-LDRPGQ--PPIDTDGI 158 (184)
T ss_pred ccCCceEEEEEEeCC-----EEEEEECCcccccee-cCCccc--ccccccce
Confidence 567899999987632 688999999876553 766554 34444443
No 21
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=20.40 E-value=2e+02 Score=25.50 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=8.8
Q ss_pred EEEEEcCeEEEE
Q 047581 200 MWISIDGIVLVH 211 (308)
Q Consensus 200 L~V~VDgk~v~q 211 (308)
-||+|||+.|.+
T Consensus 117 ~~iKVdge~Vy~ 128 (137)
T PF12101_consen 117 KWIKVDGELVYK 128 (137)
T ss_pred EEEEECCEEEec
Confidence 468888887765
No 22
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=20.17 E-value=1.5e+02 Score=24.33 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=21.2
Q ss_pred cccceeeeeeeeeEeeeeEEEEeEEEcCCCceEEEEEEec
Q 047581 152 ALVEALQYYKKENVFAKKSFGTRAKFDERKREHDIVVESS 191 (308)
Q Consensus 152 ~~~~a~LvsRrEhv~G~k~y~TkA~F~~~g~eHeI~Iec~ 191 (308)
-...|.++.||+++..++.-..+.. .....+-.|..|..
T Consensus 35 ~sv~a~Vv~Kr~~~~~~~~~~~~~~-~~~~~~YyvtFe~e 73 (110)
T PF10694_consen 35 RSVPATVVDKRTEVSTHRRSRQREV-GSESTEYYVTFEFE 73 (110)
T ss_dssp EEEEEEEEEEEEEEEEESGG--SS--SS-EEEEEEEEEES
T ss_pred EEEEEEEEEeEeEEeCCCCCCCCcc-CCCceEEEEEEEEC
Confidence 3457889999999987653222222 22334445555554
Done!