Query 047581
Match_columns 308
No_of_seqs 124 out of 134
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 22:07:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gne_A Val-1; alginate lyase, 80.3 1.4 4.8E-05 40.9 4.1 54 179-235 161-220 (252)
2 2zzj_A Glucuronan lyase A; bet 66.2 14 0.00048 33.9 7.0 45 170-215 139-183 (238)
3 1d2s_A SHBG, sex hormone-bindi 65.5 11 0.00037 31.3 5.7 79 119-231 51-129 (170)
4 1pz7_A Agrin; structural prote 64.4 50 0.0017 27.7 9.8 50 178-232 106-157 (204)
5 1f5f_A SHBG, sex hormone-bindi 60.2 16 0.00056 30.8 6.0 49 179-232 96-148 (205)
6 3sh4_A LG3 peptide; actin disa 59.5 68 0.0023 26.8 9.7 49 178-231 92-142 (195)
7 3bod_A Neurexin-1-alpha; neure 49.1 21 0.00073 29.5 4.8 49 179-232 89-140 (178)
8 2jd4_A Laminin subunit alpha-1 47.3 79 0.0027 28.8 8.7 78 120-231 69-150 (383)
9 3v64_A Low-density lipoprotein 44.6 1.3E+02 0.0046 24.8 10.0 50 178-232 93-144 (191)
10 1h30_A GAS6, growth-arrest-spe 44.3 1.8E+02 0.0061 27.1 10.8 50 178-232 118-172 (422)
11 3asi_A Neurexin-1-alpha; beta- 43.1 37 0.0013 31.5 5.9 50 179-232 85-134 (410)
12 2p24_A H-2 class II histocompa 41.7 31 0.001 30.2 4.8 29 99-133 206-234 (236)
13 1p9k_A ORF, hypothetical prote 37.9 16 0.00056 26.8 2.1 30 202-234 48-77 (79)
14 1dyk_A Laminin alpha 2 chain; 37.8 2E+02 0.0069 26.3 10.0 79 119-231 82-163 (394)
15 3pve_A Agrin, AGRN protein; mR 36.5 43 0.0015 27.8 4.8 46 179-231 94-143 (189)
16 1dyk_A Laminin alpha 2 chain; 36.1 51 0.0017 30.4 5.6 49 179-232 293-343 (394)
17 2jd4_A Laminin subunit alpha-1 32.9 66 0.0023 29.3 5.8 48 179-231 281-330 (383)
18 2h0b_A Neurexin-1-alpha; B-san 32.7 69 0.0024 26.2 5.4 28 179-211 87-114 (184)
19 3zr5_A Galactocerebrosidase; h 32.5 1.5E+02 0.005 30.5 8.7 35 178-217 595-629 (656)
20 4b1m_A Levanase; hydrolase, CB 31.1 63 0.0022 27.1 5.0 31 179-214 129-159 (185)
21 2r1b_A Neurexin-1-beta, neurex 28.8 48 0.0016 28.6 3.9 29 178-211 94-122 (220)
22 3asi_A Neurexin-1-alpha; beta- 27.0 62 0.0021 30.0 4.5 48 179-231 309-359 (410)
23 2r16_A Neurexin-1-alpha; beta- 25.6 2.8E+02 0.0094 22.7 8.1 61 118-212 51-113 (182)
24 2r1d_A Neurexin-1-beta, neurex 23.9 83 0.0028 27.4 4.5 48 179-231 123-173 (226)
25 2cua_A Protein (CUA); CUA cent 23.6 1.8E+02 0.0061 23.5 6.2 45 200-244 38-86 (135)
26 2k54_A Protein ATU0742; protei 22.3 2.4E+02 0.0081 20.8 6.5 16 228-243 103-120 (123)
27 1zps_A PRA-CH, phosphoribosyl- 20.8 1.3E+02 0.0044 25.6 4.9 31 120-150 21-53 (138)
28 1a78_A Galectin-1; S-lectin, c 20.3 2E+02 0.0067 23.1 5.8 48 179-234 81-128 (134)
No 1
>3gne_A Val-1; alginate lyase, polysaccharide lyase family 14, chlorella VI lyase; HET: FLC; 1.20A {Chlorella virus} PDB: 3a0n_A* 3im0_A*
Probab=80.27 E-value=1.4 Score=40.87 Aligned_cols=54 Identities=15% Similarity=0.332 Sum_probs=42.6
Q ss_pred CCCceEEEEEEecC--C----CCCCCcEEEEEcCeEEEEEeeeccccccceEEEeCCeeEEEE
Q 047581 179 ERKREHDIVVESST--L----GPKDPEMWISIDGIVLVHVRNLQWKFRGNQTVLVDKQPVQVF 235 (308)
Q Consensus 179 ~~g~eHeI~Iec~~--~----G~~dp~L~V~VDgk~v~qVKrL~WkFRGNqtI~vdg~~V~V~ 235 (308)
..|+.+.|.+.+.. . |..|.++.|.|||+.|+ ...|+|. .+..+.|+|+..+.|
T Consensus 161 ~~G~W~~V~q~VkLNT~~~G~g~aDG~v~v~VNG~~v~-~~~i~~r--~~~~~~I~gi~fsTF 220 (252)
T 3gne_A 161 KYDVWNRIEIGTKMNTFKNGIPQLDGESYVIVNGKKEV-LKRINWS--RSPDLLISRFDWNTF 220 (252)
T ss_dssp CBTSCEEEEEEEECCCEETTEECSCEEEEEEETTEEEE-EEEECCC--SSTTCCEEEEEEEEE
T ss_pred cCCceEEEEEEEEcCCCCCCCccCCceEEEEECCEEEE-ECCEEEE--ecCCccEeEEEEEEE
Confidence 67888888887663 2 45789999999999997 7888875 566677788877765
No 2
>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma reesei}
Probab=66.24 E-value=14 Score=33.88 Aligned_cols=45 Identities=16% Similarity=0.057 Sum_probs=34.3
Q ss_pred EEEEeEEEcCCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeee
Q 047581 170 SFGTRAKFDERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNL 215 (308)
Q Consensus 170 ~y~TkA~F~~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL 215 (308)
.|...+.. .+|+.|+|+|...=+..++.-+.|-+||++|+.-+..
T Consensus 139 ~~~~l~~v-~~G~Wh~iVihvkWs~d~~Gf~~vW~dG~~v~~~~g~ 183 (238)
T 2zzj_A 139 TRPNLATV-SAGAWHRVVLQIKWASDNTGYFKIWFDGAKVHEEYNV 183 (238)
T ss_dssp EEEEEEEC-CTTSCEEEEEEEEECSSTTEEEEEEETTEEEEEEEEE
T ss_pred eccccccc-cCCceEEEEEEEEEeCCCCcEEEEEECCEEEEeecCc
Confidence 34444443 6899999999987444467799999999999987654
No 3
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=65.49 E-value=11 Score=31.25 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=49.2
Q ss_pred CcCcEEEEEECceEEEEecCcchhHHHhhhcCCcccceeeeeeeeeEeeeeEEEEeEEEcCCCceEEEEEEecCCCCCCC
Q 047581 119 CGDFYVALVWEEEVVLLLGDYKKKAYKRTKARPALVEALQYYKKENVFAKKSFGTRAKFDERKREHDIVVESSTLGPKDP 198 (308)
Q Consensus 119 ~sgfYVAVV~d~EvvLlLGDl~kea~~r~~~~p~~~~a~LvsRrEhv~G~k~y~TkA~F~~~g~eHeI~Iec~~~G~~dp 198 (308)
-.+|...-+.|+.+.+.+.-.. . .+.+ .+..+ -..|+.|.|.|+-.. .
T Consensus 51 ~~df~~l~L~~G~l~~~~~~g~---------~-----~~~~------------~s~~~-vnDG~WH~V~v~~~~-----~ 98 (170)
T 1d2s_A 51 KDDWFMLGLRDGRPEIQLHNHW---------A-----QLTV------------GAGPR-LDDGRWHQVEVKMEG-----D 98 (170)
T ss_dssp TTEEEEEEEETTEEEEEEESSS---------C-----EEEE------------ECSCC-CCSSSCEEEEEEEET-----T
T ss_pred CCCEEEEEEeCCEEEEEEECCC---------c-----eEEE------------eCCCc-cCCCCCEEEEEEEeC-----C
Confidence 3577777778999888763211 0 1111 11112 356799999998762 4
Q ss_pred cEEEEEcCeEEEEEeeeccccccceEEEeCCee
Q 047581 199 EMWISIDGIVLVHVRNLQWKFRGNQTVLVDKQP 231 (308)
Q Consensus 199 ~L~V~VDgk~v~qVKrL~WkFRGNqtI~vdg~~ 231 (308)
.+.+.|||..+..+..+.- .- ...++|.|+|
T Consensus 99 ~~~L~VD~~~~~~~~~~~~-l~-~~~lylGG~p 129 (170)
T 1d2s_A 99 SVLLEVDGEEVLRLRQVSG-HP-IMRIALGGLL 129 (170)
T ss_dssp EEEEEETTEEEEEETTCCC-CC-EEEEEESSCS
T ss_pred EEEEEECCeeeeeeccCCC-cc-cccEEEECcc
Confidence 7999999999887765431 00 1357777766
No 4
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A
Probab=64.37 E-value=50 Score=27.67 Aligned_cols=50 Identities=4% Similarity=-0.086 Sum_probs=31.5
Q ss_pred cCCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeee--ccccccceEEEeCCeeE
Q 047581 178 DERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNL--QWKFRGNQTVLVDKQPV 232 (308)
Q Consensus 178 ~~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL--~WkFRGNqtI~vdg~~V 232 (308)
-..|+.|.|.|+-.. ..+.+.||+.......-. .-.+--+..++|.|+|.
T Consensus 106 lnDg~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 157 (204)
T 1pz7_A 106 INTNHWTHIKAYRVQ-----REGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMER 157 (204)
T ss_dssp CCSSSCEEEEEEEET-----TEEEEEETTSCCEEEECCSSCCCEEECCEEEESSCSC
T ss_pred cCCCCeEEEEEEEeC-----CEEEEEECCcceEEEECCCCCceEcCCCCEEEecCCC
Confidence 356789999998763 268999999876543311 01112244677777753
No 5
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=60.21 E-value=16 Score=30.82 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=34.5
Q ss_pred CCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeeec-c--cccc-ceEEEeCCeeE
Q 047581 179 ERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNLQ-W--KFRG-NQTVLVDKQPV 232 (308)
Q Consensus 179 ~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL~-W--kFRG-NqtI~vdg~~V 232 (308)
..|+.|.|.|+-.. ..+.+.|||..+..+.++. - +.-. +..|+|.|+|.
T Consensus 96 nDG~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~~~~~~~~~~~~~~lyiGG~p~ 148 (205)
T 1f5f_A 96 DDGRWHQVEVKMEG-----DSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLF 148 (205)
T ss_dssp CSSSCEEEEEEEET-----TEEEEEETTEEEEEECSCCCCC----CCEEEEEESSCSS
T ss_pred CCCCCEEEEEEEeC-----CEEEEEECCeeeeeeeccCCCcccccCCCceEEEeCccC
Confidence 66799999998763 3799999999988775432 1 1222 24699999873
No 6
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Probab=59.55 E-value=68 Score=26.78 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=32.2
Q ss_pred cCCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeeec--cccccceEEEeCCee
Q 047581 178 DERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNLQ--WKFRGNQTVLVDKQP 231 (308)
Q Consensus 178 ~~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL~--WkFRGNqtI~vdg~~ 231 (308)
-..|+.|.|.|+-.. -.+.+.|||..+....--. -.+.=+..|+|.|+|
T Consensus 92 l~Dg~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lyvGG~p 142 (195)
T 3sh4_A 92 INDGEWHRVTALREG-----RRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAP 142 (195)
T ss_dssp CCSSSCEEEEEEEET-----TEEEEEETTCCCEEEECCSSCCCCCCCSCEEESCCT
T ss_pred eCCCCeEEEEEEEeC-----CEEEEEECCeeeeeeeCCCCcccccCCCCEEECCCC
Confidence 356799999998763 3789999998765443110 111223468999986
No 7
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=49.08 E-value=21 Score=29.49 Aligned_cols=49 Identities=10% Similarity=0.164 Sum_probs=33.5
Q ss_pred CCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeeeccc---cccceEEEeCCeeE
Q 047581 179 ERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNLQWK---FRGNQTVLVDKQPV 232 (308)
Q Consensus 179 ~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL~Wk---FRGNqtI~vdg~~V 232 (308)
..|+.|.|.|+-.. ..+.+.||+..........=. +--+..|+|.|+|.
T Consensus 89 nDg~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 140 (178)
T 3bod_A 89 NDGKYHVVRFTRSG-----GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ 140 (178)
T ss_dssp CSSSCEEEEEEEET-----TEEEEEETTSCCEEECCCSCCCCCBCCEEEEEESCCTT
T ss_pred cCCCeEEEEEEEeC-----CEEEEEEeCCceeeeecCCCcceEEeCCCcEEEecccC
Confidence 56899999998763 378999999876654322111 23344688998874
No 8
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=47.26 E-value=79 Score=28.76 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=46.4
Q ss_pred cCcEEEEEECceEEEEe--cCcchhHHHhhhcCCcccceeeeeeeeeEeeeeEEEEeEEEcCCCceEEEEEEecCCCCCC
Q 047581 120 GDFYVALVWEEEVVLLL--GDYKKKAYKRTKARPALVEALQYYKKENVFAKKSFGTRAKFDERKREHDIVVESSTLGPKD 197 (308)
Q Consensus 120 sgfYVAVV~d~EvvLlL--GDl~kea~~r~~~~p~~~~a~LvsRrEhv~G~k~y~TkA~F~~~g~eHeI~Iec~~~G~~d 197 (308)
.+|...-+.|+.+.|.+ |+.. ..+.+ + .--..|+.|.|.|+-..
T Consensus 69 ~d~~~l~L~~G~l~~~~~~g~~~---------------~~~~~------~--------~~~~Dg~WH~V~v~r~~----- 114 (383)
T 2jd4_A 69 MDYATLQLQEGRLHFMFDLGKGR---------------TKVSH------P--------ALLSDGKWHTVKTEYIK----- 114 (383)
T ss_dssp SSEEEEEEETTEEEEEEECSSCE---------------EEEEC------C--------CCCTTSSCEEEEEEEET-----
T ss_pred CcEEEEEEECCEEEEEEECCCCe---------------EEEeC------c--------ceecCCCcEEEEEEEeC-----
Confidence 56777777899988875 5521 11111 1 11367889999998763
Q ss_pred CcEEEEEcCeEEEEEeee--ccccccceEEEeCCee
Q 047581 198 PEMWISIDGIVLVHVRNL--QWKFRGNQTVLVDKQP 231 (308)
Q Consensus 198 p~L~V~VDgk~v~qVKrL--~WkFRGNqtI~vdg~~ 231 (308)
-.+.+.|||+........ .-.+.-+..++|.|+|
T Consensus 115 ~~~~L~VD~~~~~~~~~~g~~~~l~~~~~l~vGG~p 150 (383)
T 2jd4_A 115 RKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLP 150 (383)
T ss_dssp TEEEEEETTEECCCEECCSSCCCCCCCSEEEESSCC
T ss_pred CEEEEEEcCccccceecCCCcceecCCCCeEEeccC
Confidence 268889999876544321 1112223456676665
No 9
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A
Probab=44.62 E-value=1.3e+02 Score=24.84 Aligned_cols=50 Identities=8% Similarity=-0.041 Sum_probs=31.3
Q ss_pred cCCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeee--ccccccceEEEeCCeeE
Q 047581 178 DERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNL--QWKFRGNQTVLVDKQPV 232 (308)
Q Consensus 178 ~~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL--~WkFRGNqtI~vdg~~V 232 (308)
-..|+.|.|.|+-.. ..+.+.|||.......-- .-.+.-+..|+|.|.|-
T Consensus 93 v~Dg~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 144 (191)
T 3v64_A 93 VNTNRWLRIRAHREH-----REGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGLQK 144 (191)
T ss_dssp CTTSSCEEEEEEEET-----TEEEEEETTSCCEEEECCTTCCCEEECSEEEESCCSS
T ss_pred ccCCCCEEEEEEEeC-----CEEEEEECCeeeEeEECCCCcceeccCCceEEcccCc
Confidence 466899999998763 379999999865443210 11122234577777653
No 10
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=44.34 E-value=1.8e+02 Score=27.09 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=33.8
Q ss_pred cCCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeee--cccc-cc--ceEEEeCCeeE
Q 047581 178 DERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNL--QWKF-RG--NQTVLVDKQPV 232 (308)
Q Consensus 178 ~~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL--~WkF-RG--NqtI~vdg~~V 232 (308)
-..|+.|.|.|+-.. -.+.++||+..+....-- .... +| +..|+|.|.|-
T Consensus 118 ~nDg~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~g~~~~l~~~~~~~~lyvGG~p~ 172 (422)
T 1h30_A 118 INHGMWQTISVEELA-----RNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPF 172 (422)
T ss_dssp CCSSCCEEEEEEECS-----SEEEEEETTEEEEEEECCSCSSEEETTEEECEEEESSCSS
T ss_pred ecCCCCEEEEEEEcC-----CEEEEEECCeeeEEeecCCcccccccccccceEEEecCcc
Confidence 356799999998763 379999999987765211 1111 23 45788888763
No 11
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=43.12 E-value=37 Score=31.47 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=33.0
Q ss_pred CCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeeeccccccceEEEeCCeeE
Q 047581 179 ERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNLQWKFRGNQTVLVDKQPV 232 (308)
Q Consensus 179 ~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL~WkFRGNqtI~vdg~~V 232 (308)
..|+.|.|.|+-... -.+.+.||++.+.++..-.-.+.-+..++|.|+|-
T Consensus 85 nDg~WH~V~v~r~~~----~~~~l~VD~~~~~~~~~~~~~l~~~~~lyvGG~p~ 134 (410)
T 3asi_A 85 NDNQWHNVMISRDTS----NLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAK 134 (410)
T ss_dssp CSSSCEEEEEEECTT----CEEEEEETTEEEEEECTTCCCCCBCSCEEESCCCG
T ss_pred CCCCeEEEEEEEcCC----ceEEEEECCEeceeccCCccceecCCceEECcccc
Confidence 568899999988631 13789999998877632111222344688888764
No 12
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU, immunoglobulin fold, MBP, immune system; 2.15A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=41.65 E-value=31 Score=30.18 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=7.4
Q ss_pred CeEEEEecCCCcccCCCCCcCcCcEEEEEECceEE
Q 047581 99 NQVEIYWDLRSAKFSGGPEPCGDFYVALVWEEEVV 133 (308)
Q Consensus 99 ~~V~v~WDLs~Akf~~gPEP~sgfYVAVV~d~Evv 133 (308)
..+.+.||. ..|+|.++=..+|+|.-+|.
T Consensus 206 ~p~~~~w~~------~~~~~~~~~~~~~~c~~~~~ 234 (236)
T 2p24_A 206 EPVLKHWEP------EIPAPMSELTETSGSRLEVL 234 (236)
T ss_dssp SCEEEEECC------C-------------------
T ss_pred CcEEEEecC------CCCCCCCCccceEEEEEEeE
Confidence 568899984 46888888899999987764
No 13
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=37.95 E-value=16 Score=26.81 Aligned_cols=30 Identities=33% Similarity=0.393 Sum_probs=18.1
Q ss_pred EEEcCeEEEEEeeeccccccceEEEeCCeeEEE
Q 047581 202 ISIDGIVLVHVRNLQWKFRGNQTVLVDKQPVQV 234 (308)
Q Consensus 202 V~VDgk~v~qVKrL~WkFRGNqtI~vdg~~V~V 234 (308)
|+|||+.+ +...-+...++.|.|+|.++++
T Consensus 48 V~VNG~~v---~~~~~~v~~gd~I~v~~~~~~~ 77 (79)
T 1p9k_A 48 VKVDGAVE---TRKRCKIVAGQTVSFAGHSVQV 77 (79)
T ss_dssp HEETTBCC---CCSSCCCCSSEEEEETTEEEEE
T ss_pred EEECCEEe---cCCCCCCCCCCEEEECCEEEEE
Confidence 56677653 3344455556677777776654
No 14
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=37.77 E-value=2e+02 Score=26.33 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=46.9
Q ss_pred CcCcEEEEEECceEEEEe--cCcchhHHHhhhcCCcccceeeeeeeeeEeeeeEEEEeEEEcCCCceEEEEEEecCCCCC
Q 047581 119 CGDFYVALVWEEEVVLLL--GDYKKKAYKRTKARPALVEALQYYKKENVFAKKSFGTRAKFDERKREHDIVVESSTLGPK 196 (308)
Q Consensus 119 ~sgfYVAVV~d~EvvLlL--GDl~kea~~r~~~~p~~~~a~LvsRrEhv~G~k~y~TkA~F~~~g~eHeI~Iec~~~G~~ 196 (308)
..+|...-+.|+.+.|.+ |+.. ..+.+ + .--..|+.|.|.|+-..
T Consensus 82 ~~dfi~l~L~~G~l~~~~~~g~g~---------------~~~~~------~--------~~~~Dg~WH~V~v~r~~---- 128 (394)
T 1dyk_A 82 HADFATVQLRNGFPYFSYDLGSGD---------------TSTMI------P--------TKINDGQWHKIKIVRVK---- 128 (394)
T ss_dssp SSSEEEEEEETTEEEEEEESSSCE---------------EEEEC------C--------SCCCSSSCEEEEEEEET----
T ss_pred CCceEEEEEECCEEEEEEECCCCc---------------eEEEc------c--------cccCCCCEEEEEEEEeC----
Confidence 356777777899988865 5521 11111 1 11367889999998763
Q ss_pred CCcEEEEEcCeEEEEEeee-ccccccceEEEeCCee
Q 047581 197 DPEMWISIDGIVLVHVRNL-QWKFRGNQTVLVDKQP 231 (308)
Q Consensus 197 dp~L~V~VDgk~v~qVKrL-~WkFRGNqtI~vdg~~ 231 (308)
-.+.+.|||+.+.....- .-.+.-+..++|.|+|
T Consensus 129 -~~~~L~VD~~~~~~~~~g~~~~l~~~~~l~vGG~p 163 (394)
T 1dyk_A 129 -QEGILYVDDASSQTISPKKADILDVVGILYVGGLP 163 (394)
T ss_dssp -TEEEEEETTEEEEEECSTTCCCCCCCSEEEESSCC
T ss_pred -CEEEEEEcCcccceecCCCCceecCCCCEEEcccC
Confidence 368899999987665310 0011113456677665
No 15
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}
Probab=36.53 E-value=43 Score=27.80 Aligned_cols=46 Identities=9% Similarity=0.014 Sum_probs=30.4
Q ss_pred CCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeee----ccccccceEEEeCCee
Q 047581 179 ERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNL----QWKFRGNQTVLVDKQP 231 (308)
Q Consensus 179 ~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL----~WkFRGNqtI~vdg~~ 231 (308)
..|+.|.|.|+-.. ..+.+.|||.......-. ..+. +..|+|.|.|
T Consensus 94 ~Dg~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~~~~~~l~~--~~~lyvGG~p 143 (189)
T 3pve_A 94 ALGTWVRVFLERNG-----RKGALQVGDGPRVLGESPVPHTMLNL--KEPLYVGGAP 143 (189)
T ss_dssp CTTSEEEEEEEEET-----TEEEEEETTSCCEEEECCSSCCCCCC--CSCEEESCCS
T ss_pred CCCCEEEEEEEEeC-----CEEEEEECCceeEeEEcCCCcceecC--CCCEEECCcC
Confidence 45899999998763 368999999865443211 1222 2458888876
No 16
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=36.06 E-value=51 Score=30.41 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=28.4
Q ss_pred CCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeee--ccccccceEEEeCCeeE
Q 047581 179 ERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNL--QWKFRGNQTVLVDKQPV 232 (308)
Q Consensus 179 ~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL--~WkFRGNqtI~vdg~~V 232 (308)
..|+.|.|.|+-.. -.+.+.|||..+...... ...+.-+..|+|.|.|-
T Consensus 293 ~DG~WH~V~v~~~~-----~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 343 (394)
T 1dyk_A 293 CNGQWHKVTAKKIK-----NRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPG 343 (394)
T ss_dssp TSSSCEEEEEEEET-----TEEEEEETTEEEEEECCCTTCCCBCCCBCCEESCCCT
T ss_pred cCCceEEEEEEEeC-----CEEEEEECCcccccccCCCcceecccCCCEEEcCCCc
Confidence 45678888886652 257888888765433211 12233344577777653
No 17
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=32.93 E-value=66 Score=29.28 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=27.6
Q ss_pred CCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEee-ecc-ccccceEEEeCCee
Q 047581 179 ERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRN-LQW-KFRGNQTVLVDKQP 231 (308)
Q Consensus 179 ~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKr-L~W-kFRGNqtI~vdg~~ 231 (308)
..|+.|.|.|+-.. -.+.+.|||..+..... ... .+.-+..|+|.|.|
T Consensus 281 ~DG~WH~V~l~~~~-----~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p 330 (383)
T 2jd4_A 281 CDGKWHTLQAHKSK-----HRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYP 330 (383)
T ss_dssp GSSSCEEEEEEEET-----TEEEEEETTEEEEEC----CCCCBCCCEEEEESCCC
T ss_pred cCCCcEEEEEEEcC-----CEEEEEECCeecccccCCCCcccccCCCCEEEeccc
Confidence 45788888887652 26788888886543211 111 22334457777765
No 18
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Probab=32.70 E-value=69 Score=26.16 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=22.1
Q ss_pred CCCceEEEEEEecCCCCCCCcEEEEEcCeEEEE
Q 047581 179 ERKREHDIVVESSTLGPKDPEMWISIDGIVLVH 211 (308)
Q Consensus 179 ~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~q 211 (308)
..|+.|.|.|+-.. ..+.+.|||.....
T Consensus 87 ~Dg~WH~V~v~r~~-----~~~~L~VD~~~~~~ 114 (184)
T 2h0b_A 87 NDNAWHDVKVTRNL-----RQVTISVDGILTTT 114 (184)
T ss_dssp SSSSCEEEEEEEET-----TEEEEEETTTEEEE
T ss_pred CCCCeEEEEEEEeC-----CEEEEEEcCceeee
Confidence 56799999998752 36899999987654
No 19
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A*
Probab=32.46 E-value=1.5e+02 Score=30.55 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=29.2
Q ss_pred cCCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeeecc
Q 047581 178 DERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNLQW 217 (308)
Q Consensus 178 ~~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL~W 217 (308)
-+.++.|.+.|++.+ ..+.+.+||+.++.+.--..
T Consensus 595 ~~~~~w~~L~l~~~G-----~~i~~~ldG~~v~~~~D~~~ 629 (656)
T 3zr5_A 595 VTAKRWYTLTLGIKG-----YFAFGMLNGTILWKNVRVKY 629 (656)
T ss_dssp CCTTCEEEEEEEEET-----TEEEEEETTEEEEEEEECCS
T ss_pred CCCCceEEEEEEEEC-----CEEEEEECCEEEEEEecCCC
Confidence 477889999999983 38999999999998877655
No 20
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=31.14 E-value=63 Score=27.12 Aligned_cols=31 Identities=10% Similarity=0.256 Sum_probs=26.3
Q ss_pred CCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEee
Q 047581 179 ERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRN 214 (308)
Q Consensus 179 ~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKr 214 (308)
..++.|.|.|++.+ ..+.+.|||+.++.+.-
T Consensus 129 ~~g~w~~l~I~~~G-----~~i~~~vnG~~v~~~~D 159 (185)
T 4b1m_A 129 DVNKKYHLKTEAEG-----DRFKIYLDDRLVIDAHD 159 (185)
T ss_dssp CSSCCEEEEEEEET-----TEEEEEETTEEEEEEEC
T ss_pred CCCCeEEEEEEEEC-----CEEEEEECCEEEEEEEC
Confidence 45889999999973 38999999999998865
No 21
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*
Probab=28.79 E-value=48 Score=28.61 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=23.1
Q ss_pred cCCCceEEEEEEecCCCCCCCcEEEEEcCeEEEE
Q 047581 178 DERKREHDIVVESSTLGPKDPEMWISIDGIVLVH 211 (308)
Q Consensus 178 ~~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~q 211 (308)
-..|+.|.|.|+-.. ..+.+.||+..+..
T Consensus 94 vnDG~WH~V~v~r~~-----~~~~L~VD~~~~~~ 122 (220)
T 2r1b_A 94 INDGKYHVVRFTRSG-----GNATLQVDSWPVIE 122 (220)
T ss_dssp CCSSSCEEEEEEEET-----TEEEEEETTSCCEE
T ss_pred ecCCceEEEEEEEeC-----CEEEEEECCcceee
Confidence 367899999998763 37899999997654
No 22
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=26.97 E-value=62 Score=29.99 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=31.0
Q ss_pred CCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeee--ccc-cccceEEEeCCee
Q 047581 179 ERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNL--QWK-FRGNQTVLVDKQP 231 (308)
Q Consensus 179 ~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL--~Wk-FRGNqtI~vdg~~ 231 (308)
..|+.|.|.|+-.. ..+.+.||+..+....-- +.+ |..+..|+|.|.|
T Consensus 309 ~DG~wH~V~v~r~~-----~~~~L~VD~~~~~~~~~~g~~~~~~~~~~~lylGG~p 359 (410)
T 3asi_A 309 NDGKYHVVRFTRSG-----GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 359 (410)
T ss_dssp CSSSCEEEEEEEET-----TEEEEEETTSCCEEECCSSCCCCCBCCEEEEEESSTT
T ss_pred CCCCeEEEEEEEEC-----CEEEEEECCcceecccCCCccceeeeccceEEECCcc
Confidence 45788888887652 268888998776544211 122 4456678888865
No 23
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}
Probab=25.56 E-value=2.8e+02 Score=22.69 Aligned_cols=61 Identities=11% Similarity=0.025 Sum_probs=40.1
Q ss_pred cCcCcEEEEEECceEEEEe--cCcchhHHHhhhcCCcccceeeeeeeeeEeeeeEEEEeEEEcCCCceEEEEEEecCCCC
Q 047581 118 PCGDFYVALVWEEEVVLLL--GDYKKKAYKRTKARPALVEALQYYKKENVFAKKSFGTRAKFDERKREHDIVVESSTLGP 195 (308)
Q Consensus 118 P~sgfYVAVV~d~EvvLlL--GDl~kea~~r~~~~p~~~~a~LvsRrEhv~G~k~y~TkA~F~~~g~eHeI~Iec~~~G~ 195 (308)
...+|...-+.|+.+.|.+ |+.. .. + .+...+ ..|+.|.|.|+-..
T Consensus 51 ~~~d~l~L~L~~G~l~~~~~~G~~~---------------~~-~------------~~~~~l-nDg~WH~V~v~r~~--- 98 (182)
T 2r16_A 51 DSADTLRLELDAGRVKLTVNLGKGP---------------ET-L------------FAGYNL-NDNEWHTVRVVRRG--- 98 (182)
T ss_dssp SSCCEEEEEEETTEEEEEEESSSCC---------------EE-E------------EECSSC-CSSSCEEEEEEEET---
T ss_pred CCCCEEEEEEECCEEEEEEECCCCc---------------eE-E------------EcCccc-CCCCeEEEEEEEEC---
Confidence 3456777777899988865 4311 01 1 122233 56789999998863
Q ss_pred CCCcEEEEEcCeEEEEE
Q 047581 196 KDPEMWISIDGIVLVHV 212 (308)
Q Consensus 196 ~dp~L~V~VDgk~v~qV 212 (308)
-.+.+.||+..+.+.
T Consensus 99 --~~~~L~VD~~~~~~~ 113 (182)
T 2r16_A 99 --KSLKLTVDDQQAMTG 113 (182)
T ss_dssp --TEEEEEETTCCEEEE
T ss_pred --CEEEEEECCceeEeE
Confidence 379999999987653
No 24
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*
Probab=23.89 E-value=83 Score=27.38 Aligned_cols=48 Identities=10% Similarity=0.140 Sum_probs=31.9
Q ss_pred CCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeeec---cccccceEEEeCCee
Q 047581 179 ERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNLQ---WKFRGNQTVLVDKQP 231 (308)
Q Consensus 179 ~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL~---WkFRGNqtI~vdg~~ 231 (308)
..|+.|.|.|+-.. ..+.+.||+..+..-.... -.+.-+..|+|.|+|
T Consensus 123 nDG~WH~V~v~r~~-----~~~~L~VD~~~~~~~~~~~~~~~~l~~~~~lylGG~p 173 (226)
T 2r1d_A 123 NDGKYHVVRFTRSG-----GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 173 (226)
T ss_dssp CSSSCEEEEEEEET-----TEEEEEETTSCCEEECCSSCCCCCBCSEEEEEESSTT
T ss_pred cCCCCEEEEEEEeC-----CEEEEEEcCccceEEecCCCcceeccCCCeEEEcccc
Confidence 67899999998763 3789999998644321111 112234568999987
No 25
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=23.59 E-value=1.8e+02 Score=23.54 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=34.2
Q ss_pred EEEEEcCeEEEEEeeeccccccceEEEeCCeeEEEEE---ee-eeeccC
Q 047581 200 MWISIDGIVLVHVRNLQWKFRGNQTVLVDKQPVQVFW---DV-HDWLFS 244 (308)
Q Consensus 200 L~V~VDgk~v~qVKrL~WkFRGNqtI~vdg~~V~V~W---DV-HdWlF~ 244 (308)
+.-..++...++|.--+|+|.=|+.+.=-|.+|.+.. || |+|...
T Consensus 38 ~~~~~~~~~~V~v~~~~~~f~P~~l~Vp~G~~V~~~vts~DV~Hsf~ip 86 (135)
T 2cua_A 38 VVQTGPNQYTVYVLAFAFGYQPNPIEVPQGAEIVFKITSPDVIHGFHVE 86 (135)
T ss_dssp EEEEETTEEEEEEEEETTEEESSSEEEETTSEEEEEEEBSSSCEEEEET
T ss_pred cccCCCCCEEEEEEEEeCEEECCEEEEcCCCEEEEEEEeCCccceEEec
Confidence 5555666777777777999998876666699999988 54 999875
No 26
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=22.35 E-value=2.4e+02 Score=20.77 Aligned_cols=16 Identities=0% Similarity=-0.238 Sum_probs=11.1
Q ss_pred CCe--eEEEEEeeeeecc
Q 047581 228 DKQ--PVQVFWDVHDWLF 243 (308)
Q Consensus 228 dg~--~V~V~WDVHdWlF 243 (308)
||. .+..+||..+|+-
T Consensus 103 dGkI~~~~~~~d~~~~~~ 120 (123)
T 2k54_A 103 NGRIAKAWFKIGEPRIVS 120 (123)
T ss_dssp TTEEEEEEEEEEEEECGG
T ss_pred CCEEEEEEEEcCChhhhh
Confidence 663 5677888888863
No 27
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=20.84 E-value=1.3e+02 Score=25.59 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=25.6
Q ss_pred cCcEEEEEEC--ceEEEEecCcchhHHHhhhcC
Q 047581 120 GDFYVALVWE--EEVVLLLGDYKKKAYKRTKAR 150 (308)
Q Consensus 120 sgfYVAVV~d--~EvvLlLGDl~kea~~r~~~~ 150 (308)
.|-.-|||-| .--||+||=|.+||+++|-..
T Consensus 21 ~GLipaIvQd~~tg~VLMlayMN~EAl~~Tl~t 53 (138)
T 1zps_A 21 EDLIIAVAQDHETGEVLMVAYMNREALRRTLET 53 (138)
T ss_dssp CCCEEEEEEETTTCCEEEEEEECHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCCEEEEEecCHHHHHHHHhc
Confidence 5888888887 357899999999999998553
No 28
>1a78_A Galectin-1; S-lectin, carbohydrate binding, complex (lectin/saccharide); HET: TDG; 2.00A {Bufo arenarum} SCOP: b.29.1.3 PDB: 1gan_A*
Probab=20.26 E-value=2e+02 Score=23.12 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=34.9
Q ss_pred CCCceEEEEEEecCCCCCCCcEEEEEcCeEEEEEeeeccccccceEEEeCCeeEEE
Q 047581 179 ERKREHDIVVESSTLGPKDPEMWISIDGIVLVHVRNLQWKFRGNQTVLVDKQPVQV 234 (308)
Q Consensus 179 ~~g~eHeI~Iec~~~G~~dp~L~V~VDgk~v~qVKrL~WkFRGNqtI~vdg~~V~V 234 (308)
..|+.-+|.|-|.. .+..|.|||+...+-++-. ....=.+|.|+| |++
T Consensus 81 ~~G~~F~l~i~~~~-----~~f~V~Vng~~~~~F~hR~-~~~~i~~l~I~G--v~l 128 (134)
T 1a78_A 81 QQGAEVMVCFEYQT-----QKIIIKFSSGDQFSFPVRK-VLPSIPFLSLEG--LAF 128 (134)
T ss_dssp CTTSEEEEEEEECS-----SEEEEEETTSCEEEEECSS-CCSSEEEEEEES--SEE
T ss_pred cCCCcEEEEEEEcC-----CEEEEEECCEEEEEecCCC-CHhhCCEEEEEe--EEE
Confidence 46777899999863 4799999999888775432 344455788888 554
Done!