Query 047583
Match_columns 77
No_of_seqs 115 out of 579
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 22:10:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2al3_A TUG long isoform; TUG U 70.7 7 0.00024 24.3 4.2 44 24-70 9-52 (90)
2 1und_A Advillin, P92; actin bi 62.9 1.4 4.9E-05 23.4 -0.1 20 43-62 1-20 (37)
3 1y74_B MLIN-2/CASK, peripheral 60.3 3.5 0.00012 22.3 1.2 20 43-62 26-49 (50)
4 2xko_C PIPX, global nitrogen r 49.2 1.8 6.2E-05 27.3 -1.4 10 43-52 5-14 (89)
5 1vd2_A Protein kinase C, IOTA 41.0 56 0.0019 19.9 4.6 34 34-72 16-49 (89)
6 1ujs_A Actin-binding LIM prote 40.6 7.9 0.00027 24.1 0.6 20 43-62 46-65 (88)
7 1yu8_X Villin; alpha helix, 3- 39.9 5.8 0.0002 23.5 -0.1 20 43-62 31-50 (67)
8 3qli_A Coenzyme A transferase; 38.5 19 0.00066 27.8 2.6 19 45-63 436-454 (455)
9 3n5b_B ASR0485 protein; PII, P 35.9 4 0.00014 26.7 -1.4 9 44-52 29-37 (112)
10 1qzp_A Dematin; villin headpie 35.1 5.1 0.00017 23.7 -0.9 20 43-62 32-51 (68)
11 2k6m_S Supervillin; SVHP, HP, 33.6 6.4 0.00022 23.2 -0.6 20 43-62 31-50 (67)
12 1w8x_N Protein P31, protein C, 33.4 8.4 0.00029 25.3 -0.1 28 22-51 86-123 (126)
13 3ezo_A Malonyl COA-acyl carrie 32.7 30 0.001 24.6 2.7 19 46-64 31-49 (318)
14 1zo0_A ODC-AZ, ornithine decar 32.5 28 0.00096 22.8 2.3 40 23-65 35-78 (126)
15 1zav_U 50S ribosomal protein L 30.0 29 0.001 17.3 1.7 13 50-62 18-30 (30)
16 3eh7_A 4-hydroxybutyrate COA-t 29.9 31 0.0011 26.2 2.5 18 45-62 416-434 (434)
17 3pmi_A PWWP domain-containing 28.7 17 0.00059 24.3 0.8 29 34-62 47-78 (134)
18 1j26_A Immature colon carcinom 26.8 34 0.0012 21.7 1.9 39 35-76 45-84 (112)
19 1y6i_A Mg-chelatase cofactor G 25.9 4.1 0.00014 29.3 -2.9 31 18-51 199-229 (233)
20 1wy3_A Villin; structural prot 25.6 13 0.00044 19.3 -0.2 17 45-61 1-17 (35)
21 1pzq_A Erythronolide synthase; 23.3 31 0.001 19.7 1.1 13 3-15 35-47 (60)
22 1oey_J P40-PHOX, neutrophil cy 23.2 88 0.003 20.0 3.4 29 34-62 19-47 (107)
23 3tqe_A Malonyl-COA-[acyl-carri 22.3 18 0.00062 25.6 -0.0 44 20-64 3-47 (316)
24 2lkt_A Retinoic acid receptor 22.3 37 0.0013 20.9 1.5 9 25-33 23-31 (125)
25 1xc0_A Pardaxin P-4, PA4; BEND 21.3 46 0.0016 16.9 1.4 19 43-61 8-26 (33)
26 3lft_A Uncharacterized protein 21.0 1E+02 0.0034 20.4 3.5 20 44-63 10-32 (295)
27 2ybf_B E3 ubiquitin-protein li 20.0 52 0.0018 16.3 1.4 14 48-61 9-22 (27)
No 1
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=70.67 E-value=7 Score=24.33 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=31.0
Q ss_pred ceEEEEEccCCceEEEEecccCCChhHHHHHHHHHHhhCCCCCCCcE
Q 047583 24 GHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGAL 70 (77)
Q Consensus 24 G~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L 70 (77)
|--.+++.. ..+|+.|++ -..-.+.++|++|.+.||++.++..|
T Consensus 9 ~m~v~Vl~~-n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~~~~~L 52 (90)
T 2al3_A 9 GSAVSVLAP-NGRRHTVKV--TPSTVLLQVLEDTCRRQDFNPSEYDL 52 (90)
T ss_dssp -CCEEEECT-TSCEEEECC--CTTSBHHHHHHHHHHHTTCCGGGCEE
T ss_pred ccEEEEEcC-CCcEEEEEE--CCCCCHHHHHHHHHHHhCCChhhCeE
Confidence 333444444 468999988 34457889999999999998664444
No 2
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=62.88 E-value=1.4 Score=23.36 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=17.4
Q ss_pred ccCCChhHHHHHHHHHHhhC
Q 047583 43 SYLSPPPFVDLLKRAEEELG 62 (77)
Q Consensus 43 ~~L~hP~F~~LL~~aeeEfG 62 (77)
.||+.-.|++++.++.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999983
No 3
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=60.30 E-value=3.5 Score=22.33 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=15.5
Q ss_pred ccCCChhHHHHHH----HHHHhhC
Q 047583 43 SYLSPPPFVDLLK----RAEEELG 62 (77)
Q Consensus 43 ~~L~hP~F~~LL~----~aeeEfG 62 (77)
..|+.|-||+||+ -|.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 5688999999997 4556664
No 4
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=49.19 E-value=1.8 Score=27.27 Aligned_cols=10 Identities=40% Similarity=0.663 Sum_probs=7.9
Q ss_pred ccCCChhHHH
Q 047583 43 SYLSPPPFVD 52 (77)
Q Consensus 43 ~~L~hP~F~~ 52 (77)
.|||||.|--
T Consensus 5 ~YLNHPtFGl 14 (89)
T 2xko_C 5 NYLNHPTFGL 14 (89)
T ss_dssp CEEEETTTEE
T ss_pred ccccCCccch
Confidence 4999999853
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=40.97 E-value=56 Score=19.88 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=27.7
Q ss_pred CceEEEEecccCCChhHHHHHHHHHHhhCCCCCCCcEEe
Q 047583 34 EKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTI 72 (77)
Q Consensus 34 e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~I 72 (77)
+..|+-||. ...|++|.++-.+-|++..+ .++++
T Consensus 16 di~~~~v~~----~i~~~~L~~kv~~~~~~~~~-~~f~l 49 (89)
T 1vd2_A 16 DIMITHFEP----SISFEGLCNEVRDMCSFDNE-QLFTM 49 (89)
T ss_dssp CEEEEEECT----TCCHHHHHHHHHHHTTCCSS-CCEEE
T ss_pred eEEEEECCC----CCCHHHHHHHHHHHhCCCCC-CeEEE
Confidence 478888887 46999999999999999754 56665
No 6
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=40.59 E-value=7.9 Score=24.05 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=18.7
Q ss_pred ccCCChhHHHHHHHHHHhhC
Q 047583 43 SYLSPPPFVDLLKRAEEELG 62 (77)
Q Consensus 43 ~~L~hP~F~~LL~~aeeEfG 62 (77)
.||+.-.|++++.++.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 7
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=39.87 E-value=5.8 Score=23.46 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=18.4
Q ss_pred ccCCChhHHHHHHHHHHhhC
Q 047583 43 SYLSPPPFVDLLKRAEEELG 62 (77)
Q Consensus 43 ~~L~hP~F~~LL~~aeeEfG 62 (77)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 8
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=38.47 E-value=19 Score=27.83 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.7
Q ss_pred CCChhHHHHHHHHHHhhCC
Q 047583 45 LSPPPFVDLLKRAEEELGF 63 (77)
Q Consensus 45 L~hP~F~~LL~~aeeEfG~ 63 (77)
+-||.||+.|.+++++.|+
T Consensus 436 iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 436 LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp TSCHHHHHHHHHHHHHTTC
T ss_pred ccCcchHHHHHHHHHHcCC
Confidence 8999999999988888764
No 9
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=35.90 E-value=4 Score=26.66 Aligned_cols=9 Identities=22% Similarity=0.534 Sum_probs=7.5
Q ss_pred cCCChhHHH
Q 047583 44 YLSPPPFVD 52 (77)
Q Consensus 44 ~L~hP~F~~ 52 (77)
|||||.|--
T Consensus 29 YLNHPTFGL 37 (112)
T 3n5b_B 29 YINHPTWGL 37 (112)
T ss_dssp EEEETTTEE
T ss_pred hccCCccch
Confidence 999999853
No 10
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=35.12 E-value=5.1 Score=23.66 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.3
Q ss_pred ccCCChhHHHHHHHHHHhhC
Q 047583 43 SYLSPPPFVDLLKRAEEELG 62 (77)
Q Consensus 43 ~~L~hP~F~~LL~~aeeEfG 62 (77)
.||+.-.|++++.++.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 11
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=33.56 E-value=6.4 Score=23.20 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.6
Q ss_pred ccCCChhHHHHHHHHHHhhC
Q 047583 43 SYLSPPPFVDLLKRAEEELG 62 (77)
Q Consensus 43 ~~L~hP~F~~LL~~aeeEfG 62 (77)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999985
No 12
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=33.36 E-value=8.4 Score=25.25 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=17.3
Q ss_pred CcceEEEEEccCCceEEE----------EecccCCChhHH
Q 047583 22 PKGHVAVYVGELEKKRFV----------VPISYLSPPPFV 51 (77)
Q Consensus 22 pkG~~aVyVG~~e~~Rfv----------Vp~~~L~hP~F~ 51 (77)
.+||+|+.|-. +-.|+ +|+-+||.|+-|
T Consensus 86 ~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPG--RAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECC--SSSSEEEEEEEESSCCCCSCCC-----
T ss_pred Ccccceeeccc--hhhhhhhhhcCCCcceeeEEEeceeee
Confidence 58999999943 34454 688899988755
No 13
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=32.65 E-value=30 Score=24.56 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=17.6
Q ss_pred CChhHHHHHHHHHHhhCCC
Q 047583 46 SPPPFVDLLKRAEEELGFH 64 (77)
Q Consensus 46 ~hP~F~~LL~~aeeEfG~~ 64 (77)
++|.|++.++++.+.+|++
T Consensus 31 ~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 31 DVAVVRETLDEASDALGQD 49 (318)
T ss_dssp TCHHHHHHHHHHHHHHSSC
T ss_pred hCHHHHHHHHHHHHHhCCC
Confidence 9999999999999998875
No 14
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7
Probab=32.49 E-value=28 Score=22.77 Aligned_cols=40 Identities=33% Similarity=0.391 Sum_probs=28.8
Q ss_pred cceEEEEEccCCceEEE-Eeccc---CCChhHHHHHHHHHHhhCCCC
Q 047583 23 KGHVAVYVGELEKKRFV-VPISY---LSPPPFVDLLKRAEEELGFHH 65 (77)
Q Consensus 23 kG~~aVyVG~~e~~Rfv-Vp~~~---L~hP~F~~LL~~aeeEfG~~~ 65 (77)
--+-+|..|+ .=|+ ||..- .+--.|.+||+-|||+.+.++
T Consensus 35 ~~W~~Vl~~~---~Lyv~iP~~~~~~gsKe~fv~LLEfAEe~L~~~~ 78 (126)
T 1zo0_A 35 VTWRAVWNGG---GLYIELPAGPLPEGSKDSFAALLEFAEEQLRADH 78 (126)
T ss_dssp EEEEEEEETT---EEEEECSSCCCSSCCSHHHHHHHHHHHHHHCCCC
T ss_pred ceEEEEEeCC---eEEEEcCCccccccchHHHHHHHHHHHHhcCCCE
Confidence 4455666654 5566 67544 366789999999999999864
No 15
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=30.05 E-value=29 Score=17.28 Aligned_cols=13 Identities=31% Similarity=0.805 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhC
Q 047583 50 FVDLLKRAEEELG 62 (77)
Q Consensus 50 F~~LL~~aeeEfG 62 (77)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4578888899998
No 16
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=29.91 E-value=31 Score=26.19 Aligned_cols=18 Identities=22% Similarity=0.578 Sum_probs=13.8
Q ss_pred CCChhHHHHHHHH-HHhhC
Q 047583 45 LSPPPFVDLLKRA-EEELG 62 (77)
Q Consensus 45 L~hP~F~~LL~~a-eeEfG 62 (77)
+.||.|++.|.+. ++.||
T Consensus 416 iAhpdfr~~L~~~a~~~~~ 434 (434)
T 3eh7_A 416 IAHPDFREELTKHLRKRFG 434 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcHHHHHHHHHHhhC
Confidence 9999999977654 45565
No 17
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=28.72 E-value=17 Score=24.27 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=25.1
Q ss_pred CceEEEEecccCCC---hhHHHHHHHHHHhhC
Q 047583 34 EKKRFVVPISYLSP---PPFVDLLKRAEEELG 62 (77)
Q Consensus 34 e~~RfvVp~~~L~h---P~F~~LL~~aeeEfG 62 (77)
+++=|-||+.-|+| -.-|+|+++|.|.||
T Consensus 47 ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 47 KMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred ccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 67889999988876 568999999999987
No 18
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=26.82 E-value=34 Score=21.68 Aligned_cols=39 Identities=13% Similarity=0.287 Sum_probs=26.9
Q ss_pred ceEEEEecc-cCCChhHHHHHHHHHHhhCCCCCCCcEEecCCC
Q 047583 35 KKRFVVPIS-YLSPPPFVDLLKRAEEELGFHHPMGALTIPCRE 76 (77)
Q Consensus 35 ~~RfvVp~~-~L~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~ 76 (77)
+-||-+|.. .|....-..|++.+.. -.. .+|.|+|-|+.
T Consensus 45 ~Lrf~i~t~~~Lp~~~k~rl~~~~~~--ri~-~~G~ivv~~q~ 84 (112)
T 1j26_A 45 EVRFHLASADWIEEPVRQKIALTHKN--KIN-KAGELVLTSES 84 (112)
T ss_dssp EEEEEGGGCTTSCHHHHHHHHHHTTT--TBC-SSSEEEEEECC
T ss_pred EEEEeccccccCCHHHHHHHHHhhcc--ccc-cCCeEEEEECC
Confidence 457888884 7777777777776433 223 35899999985
No 19
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=25.85 E-value=4.1 Score=29.32 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=20.2
Q ss_pred CCCCCcceEEEEEccCCceEEEEecccCCChhHH
Q 047583 18 QCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFV 51 (77)
Q Consensus 18 ~~~vpkG~~aVyVG~~e~~RfvVp~~~L~hP~F~ 51 (77)
+..+|+||+|+.-.- ..-| +=-+.|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~l-rG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQL-RGVR--VAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCT-TCTH--HHHHHHTSTHHH
T ss_pred eCCCCCCCCCCcccc-chHH--HHHHHHCCcccc
Confidence 346899999986421 1111 445788999884
No 20
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=25.64 E-value=13 Score=19.33 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=14.0
Q ss_pred CCChhHHHHHHHHHHhh
Q 047583 45 LSPPPFVDLLKRAEEEL 61 (77)
Q Consensus 45 L~hP~F~~LL~~aeeEf 61 (77)
|+.-.|+.++.++.+||
T Consensus 1 Lsd~dF~~vFgmsr~eF 17 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp CCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 45667999999999887
No 21
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=23.29 E-value=31 Score=19.72 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=11.0
Q ss_pred hhHHHHHhhhhcc
Q 047583 3 SNAKQVLKLQNNA 15 (77)
Q Consensus 3 ~~~k~~l~~~~s~ 15 (77)
.+|.++|+||+|.
T Consensus 35 qrlesllrrwnsr 47 (60)
T 1pzq_A 35 QRLESLLRRWNSR 47 (60)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 4688999999986
No 22
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=23.19 E-value=88 Score=20.04 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=25.3
Q ss_pred CceEEEEecccCCChhHHHHHHHHHHhhC
Q 047583 34 EKKRFVVPISYLSPPPFVDLLKRAEEELG 62 (77)
Q Consensus 34 e~~RfvVp~~~L~hP~F~~LL~~aeeEfG 62 (77)
..+-..|.-+.-..|.|.+||.+-..+|.
T Consensus 19 ~irdI~veedl~~~P~ykdLl~lmr~~F~ 47 (107)
T 1oey_J 19 TIKDIAVEEDLSSTPLLKDLLELTRREFQ 47 (107)
T ss_dssp EEEEEEECSCTTCCCCHHHHHHHHHHHHC
T ss_pred eeeeEEEccccccCCCHHHHHHHHHHHhc
Confidence 34667778888999999999999999998
No 23
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii}
Probab=22.32 E-value=18 Score=25.60 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=27.4
Q ss_pred CCCcceEEEEEccCCceEEEEe-cccCCChhHHHHHHHHHHhhCCC
Q 047583 20 GVPKGHVAVYVGELEKKRFVVP-ISYLSPPPFVDLLKRAEEELGFH 64 (77)
Q Consensus 20 ~vpkG~~aVyVG~~e~~RfvVp-~~~L~hP~F~~LL~~aeeEfG~~ 64 (77)
.+|+...-|+-|.+.+ +.=.- -=|-++|.|++.++++.+.+|++
T Consensus 3 ~m~~~~afvF~GQGsq-~~gMg~~L~~~~p~fr~~~~~~~~~l~~~ 47 (316)
T 3tqe_A 3 VMPQSFAFVFPGQGSQ-HLGMLAELGLQQPIVLETFQQASSALAYD 47 (316)
T ss_dssp CCCCCCEEEECCTTCC-CTTTTHHHHHHCHHHHHHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCcchh-hHhHHHHHHHcCHHHHHHHHHHHHHhCcC
Confidence 3455666677776321 11000 11346899999999999988864
No 24
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=22.29 E-value=37 Score=20.85 Aligned_cols=9 Identities=44% Similarity=0.866 Sum_probs=7.8
Q ss_pred eEEEEEccC
Q 047583 25 HVAVYVGEL 33 (77)
Q Consensus 25 ~~aVyVG~~ 33 (77)
|.+||||++
T Consensus 23 H~gIYvGdg 31 (125)
T 2lkt_A 23 HWALYIGDG 31 (125)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeCCC
Confidence 899999973
No 25
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=21.31 E-value=46 Score=16.93 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=14.5
Q ss_pred ccCCChhHHHHHHHHHHhh
Q 047583 43 SYLSPPPFVDLLKRAEEEL 61 (77)
Q Consensus 43 ~~L~hP~F~~LL~~aeeEf 61 (77)
..++.|+|+.||.......
T Consensus 8 kiissplfktllsavgsal 26 (33)
T 1xc0_A 8 KIISSPLFKTLLSAVGSAL 26 (33)
T ss_dssp HHTTTTTHHHHHHHHHHHT
T ss_pred HHHccHHHHHHHHHHHHHh
Confidence 3578999999998765543
No 26
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=21.00 E-value=1e+02 Score=20.45 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=16.2
Q ss_pred cCCChhHHHHHHHHHH---hhCC
Q 047583 44 YLSPPPFVDLLKRAEE---ELGF 63 (77)
Q Consensus 44 ~L~hP~F~~LL~~aee---EfG~ 63 (77)
.++||.|-++++-.++ +.||
T Consensus 10 ~~~~p~~~~i~~gi~~~l~~~gy 32 (295)
T 3lft_A 10 FVSHPSLDLIYKGIQDGLAEEGY 32 (295)
T ss_dssp CSCCHHHHHHHHHHHHHHHHTTC
T ss_pred ccCChhHHHHHHHHHHHHHHcCC
Confidence 5899999999876654 6788
No 27
>2ybf_B E3 ubiquitin-protein ligase RAD18; E2 ubiquitin conjugating enzyme, E3 ubiquitin ligase translesion synthesis, PCNA ubiquitination; 2.00A {Homo sapiens}
Probab=20.01 E-value=52 Score=16.27 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHhh
Q 047583 48 PPFVDLLKRAEEEL 61 (77)
Q Consensus 48 P~F~~LL~~aeeEf 61 (77)
-.||-|+++|...|
T Consensus 9 neFq~LVDqakk~y 22 (27)
T 2ybf_B 9 SEFQLLVDQARKGY 22 (27)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH
Confidence 47999999998754
Done!