BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047584
(883 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 130/297 (43%), Gaps = 46/297 (15%)
Query: 197 KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKA------- 249
+K++V + + S+ G + I GM G GK+ LA + V+DH L+
Sbjct: 135 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAA-----EAVRDHSLLEGCFPGGVH 189
Query: 250 WTCVSEDFDVKGLTRTILSSITKQTVDNN-------DLNFLQEELKKQLSRK--KFLLVL 300
W V + D GL + + T+ D + ++ ++ L+ + RK + LL+L
Sbjct: 190 WVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLIL 248
Query: 301 DDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVA-KIMSLDQAYELKS-LSTEDCLS 358
DDVW+ S +A +I++TTR++ V +M ++S L E L
Sbjct: 249 DDVWD---------SWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE 299
Query: 359 VLAQH-SLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREW--KGVLS 415
+L+ +++ D L E I+ +C G PL +G LL P + E+ K + +
Sbjct: 300 ILSLFVNMKKAD------LPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQN 353
Query: 416 SKIWELPE----DRCPIIPALAVSYYYLPPILKQCFAYCSLFPKDYEFDEEEIILLW 468
+ + + D + A+++S L +K + S+ KD + + + +LW
Sbjct: 354 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW 410
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 130/297 (43%), Gaps = 46/297 (15%)
Query: 197 KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKA------- 249
+K++V + + S+ G + I GM G GK+ LA + V+DH L+
Sbjct: 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAA-----EAVRDHSLLEGCFPGGVH 183
Query: 250 WTCVSEDFDVKGLTRTILSSITKQTVDNN-------DLNFLQEELKKQLSRK--KFLLVL 300
W V + D GL + + T+ D + ++ ++ L+ + RK + LL+L
Sbjct: 184 WVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLIL 242
Query: 301 DDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVA-KIMSLDQAYELKS-LSTEDCLS 358
DDVW+ S +A +I++TTR++ V +M ++S L E L
Sbjct: 243 DDVWD---------SWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE 293
Query: 359 VLAQH-SLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREW--KGVLS 415
+L+ +++ D L E I+ +C G PL +G LL P + E+ K + +
Sbjct: 294 ILSLFVNMKKAD------LPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQN 347
Query: 416 SKIWELPE----DRCPIIPALAVSYYYLPPILKQCFAYCSLFPKDYEFDEEEIILLW 468
+ + + D + A+++S L +K + S+ KD + + + +LW
Sbjct: 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW 404
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 124/297 (41%), Gaps = 46/297 (15%)
Query: 197 KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKA------- 249
+K++V + + + +G + I GM G GK+ LA + V+DH L+
Sbjct: 129 RKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAA-----EAVRDHSLLEGCFSGGVH 183
Query: 250 WTCVSEDFDVKGLT---RTILSSITKQTVDNNDLNFLQEELKKQL------SRKKFLLVL 300
W + + D GL + + + ++ + L EE K +L + LL+L
Sbjct: 184 WVSIGKQ-DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLIL 242
Query: 301 DDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVA-KIMSLDQAYELKS-LSTEDCLS 358
DDVW+ W +A +I++TTR++ V +M ++S L E L
Sbjct: 243 DDVWDP----WV-----LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLE 293
Query: 359 VLAQH-SLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKP-----YKREWKG 412
+L+ +++ D + I+ +C G PL +G LL P Y R+ +
Sbjct: 294 ILSLFVNMKKEDLPAE------AHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQN 347
Query: 413 VLSSKIWELPE-DRCPIIPALAVSYYYLPPILKQCFAYCSLFPKDYEFDEEEIILLW 468
+I + D + A+++S L +K + S+ KD + + + +LW
Sbjct: 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 404
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 597 LLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLED 656
L+ LQ LR L I LP S+ +L+ L+ L + + + +L +++ L L L L
Sbjct: 182 LVNLQSLR---LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
Query: 657 CDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTL 700
C L+ G L L + +L +PL I RLT L+ L
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 12/136 (8%)
Query: 605 VFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLC 664
LR +P+ PD L +L++ + + LP++ + L +L L + L+ L
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALP 143
Query: 665 ADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTC---LQTLCNFVVAKDSGSGLRELKSLTH 721
A + +L +L L L E+P + Q L N + +G+R L +
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA--- 200
Query: 722 LERTLKISKLENVKCV 737
I+ L+N+K +
Sbjct: 201 -----SIANLQNLKSL 211
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 785 NLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKHLVVCGMSS 844
NL+ ++ G P + + NL +LK N + P++ LP L+ L + G ++
Sbjct: 184 NLQSLRLEWTGIRSLPASIAN--LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 845 VRRLDPEFYGK 855
+R P F G+
Sbjct: 242 LRNYPPIFGGR 252
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 599 KLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCD 658
+L L+ ++ + ELPD+ L L L+ +R+LP S+ L L L + C
Sbjct: 102 RLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP 161
Query: 659 RLKKLCADMGN---------LIKLHHLKNSNTDSLEEMPLGIVRLTCLQTL 700
L +L + + L+ L L+ T + +P I L L++L
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSL 211
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 123/297 (41%), Gaps = 46/297 (15%)
Query: 197 KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKA------- 249
+K++V + + + +G + I GM G GK+ LA + V+DH L+
Sbjct: 136 RKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAA-----EAVRDHSLLEGCFSGGVH 190
Query: 250 WTCVSEDFDVKGLT---RTILSSITKQTVDNNDLNFLQEELKKQL------SRKKFLLVL 300
W + + D GL + + + ++ + L EE K +L + LL+L
Sbjct: 191 WVSIGKQ-DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLIL 249
Query: 301 DDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVA-KIMSLDQAYELKS-LSTEDCLS 358
DDVW+ W +A +I++TT ++ V +M ++S L E L
Sbjct: 250 DDVWDP----WV-----LKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLE 300
Query: 359 VLAQH-SLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKP-----YKREWKG 412
+L+ +++ D + I+ +C G PL +G LL P Y R+ +
Sbjct: 301 ILSLFVNMKKEDLPAE------AHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQN 354
Query: 413 VLSSKIWELPE-DRCPIIPALAVSYYYLPPILKQCFAYCSLFPKDYEFDEEEIILLW 468
+I + D + A+++S L +K + S+ KD + + + +LW
Sbjct: 355 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 411
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 23/175 (13%)
Query: 600 LQRLRVFSLRGYCIPE--LPDSVGDLRYLRYLNLSGTVIRSL-PESVNKLYNLHSLLLE- 655
L L V + G E LPD +LR L +L+LS + L P + N L +L L +
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 656 ----DCDRLKKLCADMGNLI--KLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDS 709
D C + ++ L+H+ S L+ P + L Q +F +
Sbjct: 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN--DFACTCEH 585
Query: 710 GSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDG 764
S L+ +K +R L + ++E ++C A K+ + LSLN TC G
Sbjct: 586 QSFLQWIKD----QRQLLV-EVERMEC------ATPSDKQGMPVLSLNITCQMTG 629
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 592 SILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHS 651
+I + K L L G + ELP + +L LR L+LS + SLP + + L
Sbjct: 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297
Query: 652 LLLEDCDRLKKLCADMGNLIKLHHL 676
D + + L + GNL L L
Sbjct: 298 FYFFD-NMVTTLPWEFGNLCNLQFL 321
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 23/174 (13%)
Query: 600 LQRLRVFSLRGYCIPE--LPDSVGDLRYLRYLNLSGTVIRSL-PESVNKLYNLHSLLLE- 655
L L V + G E LPD +LR L +L+LS + L P + N L +L L +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 656 ----DCDRLKKLCADMGNLI--KLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDS 709
D C + ++ L+H+ S L+ P + L Q +F +
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN--DFACTCEH 561
Query: 710 GSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTD 763
S L+ +K +R L + ++E ++C A K+ + LSLN TC +
Sbjct: 562 QSFLQWIKD----QRQLLV-EVERMEC------ATPSDKQGMPVLSLNITCQMN 604
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 600 LQRLRVFSLRGYCIPE--LPDSVGDLRYLRYLNLSGTVIRSL-PESVNKLYNLHSLLLE- 655
L L V + G E LPD +LR L +L+LS + L P + N L +L L +
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 656 ----DCDRLKKLCADMGNLI--KLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDS 709
D C + ++ L+H+ S L+ P + L Q +F +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN--DFACTCEH 266
Query: 710 GSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTC 760
S L+ +K +R L + ++E ++C A K+ + LSLN TC
Sbjct: 267 QSFLQWIKD----QRQLLV-EVERMEC------ATPSDKQGMPVLSLNITC 306
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 23/116 (19%)
Query: 194 ETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN----DKRVQDHFDLKA 249
E KK + KD S G F + G G+GKTT A LV D Q+ D++
Sbjct: 59 ENSKKNSFKHAGKDGS---GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR- 114
Query: 250 WTCVSEDFDVKGLTRTILSSITKQTVDNNDL--NFLQEELKKQLSRKKFLLVLDDV 303
++T+L++ K +DN + F E + L+ K F++++D+V
Sbjct: 115 -------------SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEV 157
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 592 SILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESV-NKLYNLH 650
S+L +LL+LQ +++ G P + L YLR LN+SG + +L ESV + + NL
Sbjct: 266 SMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323
Query: 651 SLLLED----CD 658
+L+L+ CD
Sbjct: 324 TLILDSNPLACD 335
>pdb|1YQ3|A Chain A, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|A Chain A, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
pdb|2FBW|A Chain A, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|N Chain N, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2H88|A Chain A, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H88|N Chain N, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H89|A Chain A, Avian Respiratory Complex Ii With Malonate Bound
pdb|2WQY|A Chain A, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|N Chain N, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 621
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 585 GPCYLAPSILPKLLKLQRLRVFSLRGYCIPELP----------DSVGDLRYLRYLNLSGT 634
G L + L L+ R ++ C P P +SV +L LR+ + GT
Sbjct: 405 GANRLGANSLLDLVVFGRACALTIAETCKPGEPVPSIKPNAGEESVANLDKLRFAD--GT 462
Query: 635 V--------IRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEE 686
+ ++ +S ++ S+L E C++L ++ D+ +L NTD +E
Sbjct: 463 IRTSEARLNMQKTMQSHAAVFRTGSILQEGCEKLSQIYRDLAHLKTFDRGIVWNTDLVET 522
Query: 687 MPLGIVRLTCLQTLCNFVVAKDS-GSGLRE 715
+ L + L LQT+ K+S G+ RE
Sbjct: 523 LELQNLMLCALQTIYGAEARKESRGAHARE 552
>pdb|1ZOY|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3ABV|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
pdb|3SFD|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 622
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 618 DSVGDLRYLRYLNLSGTV--------IRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGN 669
+SV +L LR+ N GT+ ++ +S ++ + S+L E C+++ +L D+ +
Sbjct: 449 ESVMNLDKLRFAN--GTIRTSELRLSMQKSMQSHAAVFRVGSVLQEGCEKILRLYGDLQH 506
Query: 670 LIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDS-GSGLRE 715
L NTD +E + L + L LQT+ K+S G+ RE
Sbjct: 507 LKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHARE 553
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 599 KLQRLRVFSLRGYCIPELPDSV-GDLRYLRYLNLSGTVIRSLPESV-NKLYNLHSLLLED 656
+L L L G + LP+ V L L YLNLS ++SLP V +KL L L L +
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-N 108
Query: 657 CDRLKKLCADMGNLIKLHHLKNSN--TDSLEEMPLGIV-RLTCLQ 698
++L+ L G KL LK+ + L+ +P G+ RLT LQ
Sbjct: 109 TNQLQSL--PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
>pdb|2PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant D198e
Length = 298
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 722 LERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSS 767
++ K+S E VK + D M+ M+ ++L L +N+T + G ++
Sbjct: 196 VQEKYKVSYDEKVKSIKDTMDETMNNSEDLNHLYINFTSLSSGGTA 241
>pdb|3UQS|A Chain A, Crystal Structures Of Murine Norovirus Rna-Dependent Rna
Polymerase
pdb|3UQS|B Chain B, Crystal Structures Of Murine Norovirus Rna-Dependent Rna
Polymerase
pdb|3UQS|C Chain C, Crystal Structures Of Murine Norovirus Rna-Dependent Rna
Polymerase
pdb|3UR0|A Chain A, Crystal Structures Of Murine Norovirus Rna-Dependent Rna
Polymerase In Complex With Suramin
pdb|3UR0|B Chain B, Crystal Structures Of Murine Norovirus Rna-Dependent Rna
Polymerase In Complex With Suramin
pdb|3UR0|C Chain C, Crystal Structures Of Murine Norovirus Rna-Dependent Rna
Polymerase In Complex With Suramin
Length = 515
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 820 GICTALPSVGQLPSLKH--LVVCGMSSVRRLDPE---------FYGKDASI 859
G+ + P QL SL H L +C M V R+DP+ FYG D +
Sbjct: 297 GLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVV 347
>pdb|3UPF|A Chain A, Crystal Structure Of Murine Norovirus Rna-Dependent Rna
Polymerase Bound To Nf023
pdb|3UPF|B Chain B, Crystal Structure Of Murine Norovirus Rna-Dependent Rna
Polymerase Bound To Nf023
pdb|3UPF|C Chain C, Crystal Structure Of Murine Norovirus Rna-Dependent Rna
Polymerase Bound To Nf023
Length = 525
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 820 GICTALPSVGQLPSLKH--LVVCGMSSVRRLDPE---------FYGKDASI 859
G+ + P QL SL H L +C M V R+DP+ FYG D +
Sbjct: 307 GLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVV 357
>pdb|3NAH|A Chain A, Crystal Structures And Functional Analysis Of Murine
Norovirus Rna- Dependent Rna Polymerase
pdb|3NAH|B Chain B, Crystal Structures And Functional Analysis Of Murine
Norovirus Rna- Dependent Rna Polymerase
pdb|3NAH|C Chain C, Crystal Structures And Functional Analysis Of Murine
Norovirus Rna- Dependent Rna Polymerase
pdb|3NAI|A Chain A, Crystal Structures And Functional Analysis Of Murine
Norovirus Rna- Dependent Rna Polymerase
pdb|3NAI|B Chain B, Crystal Structures And Functional Analysis Of Murine
Norovirus Rna- Dependent Rna Polymerase
pdb|3NAI|C Chain C, Crystal Structures And Functional Analysis Of Murine
Norovirus Rna- Dependent Rna Polymerase
pdb|3QID|A Chain A, Crystal Structures And Functional Analysis Of Murine
Norovirus Rna- Dependent Rna Polymerase
pdb|3QID|B Chain B, Crystal Structures And Functional Analysis Of Murine
Norovirus Rna- Dependent Rna Polymerase
pdb|3QID|C Chain C, Crystal Structures And Functional Analysis Of Murine
Norovirus Rna- Dependent Rna Polymerase
pdb|3SFG|A Chain A, Crystal Structure Of Murine Norovirus Rna Dependent Rna
Polymerase In Complex With 2thiouridine(2tu)
pdb|3SFG|B Chain B, Crystal Structure Of Murine Norovirus Rna Dependent Rna
Polymerase In Complex With 2thiouridine(2tu)
pdb|3SFG|C Chain C, Crystal Structure Of Murine Norovirus Rna Dependent Rna
Polymerase In Complex With 2thiouridine(2tu)
pdb|3SFU|A Chain A, Crystal Structure Of Murine Norovirus Rna Dependent Rna
Polymerase In Complex With Ribavirin
pdb|3SFU|B Chain B, Crystal Structure Of Murine Norovirus Rna Dependent Rna
Polymerase In Complex With Ribavirin
pdb|3SFU|C Chain C, Crystal Structure Of Murine Norovirus Rna Dependent Rna
Polymerase In Complex With Ribavirin
Length = 517
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 820 GICTALPSVGQLPSLKH--LVVCGMSSVRRLDPE---------FYGKDASI 859
G+ + P QL SL H L +C M V R+DP+ FYG D +
Sbjct: 297 GLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVV 347
>pdb|3ECC|A Chain A, Crystal Structure Of The Dnac Helicase Loader In Complex
With Adp-Bef3
Length = 185
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 35/144 (24%)
Query: 218 IPIIGMGGLGKTTLA----QLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQ 273
+ +G G+GKT LA + +Y K ++ +F FD K L + K
Sbjct: 41 LTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-----------FDTKDLIFRL-----KH 84
Query: 274 TVD-NNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWAR----LSLPFQAGAQGSKIV 328
+D D FL+ L + LVLDD+ +E +DW R + ++ S I+
Sbjct: 85 LMDEGKDTKFLKTVLNSPV------LVLDDLGSERLSDWQRELISYIITYRYNNLKSTII 138
Query: 329 VTT----RNEEVAKIMSLDQAYEL 348
T R EE + +S D A L
Sbjct: 139 TTNYSLQREEESSVRISADLASRL 162
>pdb|1GYM|A Chain A, Phosphatidylinositol-Specific Phospholipase C In Complex
With Glucosamine-(Alpha-1-6)-Myo-Inositol
pdb|1PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C
pdb|1PTG|A Chain A, Phosphatidylinositol-specific Phospholipase C In Complex
With Myo-inositol
Length = 298
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 722 LERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSS 767
++ K+S E VK + D M+ M+ ++L L +N+T + G ++
Sbjct: 196 VQDKYKVSYDEKVKSIKDTMDETMNNSEDLNHLYINFTSLSSGGTA 241
>pdb|6PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant H32l
Length = 298
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 722 LERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSS 767
++ K+S E VK + D M+ M+ ++L L +N+T + G ++
Sbjct: 196 VQDKYKVSYDEKVKSIKDTMDETMNNSEDLNHLYINFTSLSSGGTA 241
>pdb|4PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant D274n
Length = 298
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 722 LERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSS 767
++ K+S E VK + D M+ M+ ++L L +N+T + G ++
Sbjct: 196 VQDKYKVSYDEKVKSIKDTMDETMNNSEDLNHLYINFTSLSSGGTA 241
>pdb|7PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant R163k
Length = 298
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 722 LERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSS 767
++ K+S E VK + D M+ M+ ++L L +N+T + G ++
Sbjct: 196 VQDKYKVSYDEKVKSIKDTMDETMNNSEDLNHLYINFTSLSSGGTA 241
>pdb|3PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant D274s
Length = 298
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 722 LERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSS 767
++ K+S E VK + D M+ M+ ++L L +N+T + G ++
Sbjct: 196 VQDKYKVSYDEKVKSIKDTMDETMNNSEDLNHLYINFTSLSSGGTA 241
>pdb|5PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant H32a
Length = 298
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 722 LERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSS 767
++ K+S E VK + D M+ M+ ++L L +N+T + G ++
Sbjct: 196 VQDKYKVSYDEKVKSIKDTMDETMNNSEDLNHLYINFTSLSSGGTA 241
>pdb|3EC2|A Chain A, Crystal Structure Of The Dnac Helicase Loader
Length = 180
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 33/143 (23%)
Query: 218 IPIIGMGGLGKTTLA----QLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQ 273
+ +G G+GKT LA + +Y K ++ +F FD K L + +
Sbjct: 41 LTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-----------FDTKDL----IFRLKHL 85
Query: 274 TVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWAR----LSLPFQAGAQGSKIVV 329
+ D FL+ L + LVLDD+ +E +DW R + ++ S I+
Sbjct: 86 XDEGKDTKFLKTVLNSPV------LVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT 139
Query: 330 TT----RNEEVAKIMSLDQAYEL 348
T R EE + +S D A L
Sbjct: 140 TNYSLQREEESSVRISADLASRL 162
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 602 RLRVFSLRGYCIPE---LPDSVGDLRYLRYLNLSG--TVIRSLPESVNKLYNLHSLLL 654
R+ L G +P+ +P S+ +L YL +L + G ++ +P ++ KL LH L +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
>pdb|3IL5|A Chain A, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|B Chain B, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|C Chain C, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|D Chain D, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
Length = 343
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 256 DFDVKGLTRTILSSITKQTVD-----NNDLNFLQEELKK-QLSRKKFLLVLDDVWN 305
DF +K +++ ILS +T +TVD ++ + + +K ++SR+KFL +D N
Sbjct: 241 DFAIKDVSQNILSLVTDETVDYLLLHQANVRIIDKIARKTKISREKFLTNMDKYGN 296
>pdb|3IL6|A Chain A, Structure Of E. Faecalis Fabh In Complex With 2-({4-[(3r,
5s)-3,5-Dimethylpiperidin-1-Yl]-3-Phenoxybenzoyl}amino)
Benzoic Acid
Length = 321
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 256 DFDVKGLTRTILSSITKQTVD-----NNDLNFLQEELKK-QLSRKKFLLVLDDVWN 305
DF +K +++ ILS +T +TVD ++ + + +K ++SR+KFL +D N
Sbjct: 221 DFAIKDVSQNILSLVTDETVDYLLLHQANVRIIDKIARKTKISREKFLTNMDKYGN 276
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 555 RGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIP 614
+G + G FGDL I+ + N + + L KL +R+
Sbjct: 47 KGAFSG---FGDLEKIE--------ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95
Query: 615 ELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLK 661
P++ +L L+YL +S T I+ LP+ V+K+++L +LL+ D +
Sbjct: 96 N-PEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNIN 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,290,409
Number of Sequences: 62578
Number of extensions: 1106629
Number of successful extensions: 3105
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 3077
Number of HSP's gapped (non-prelim): 58
length of query: 883
length of database: 14,973,337
effective HSP length: 107
effective length of query: 776
effective length of database: 8,277,491
effective search space: 6423333016
effective search space used: 6423333016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)