Query 047584
Match_columns 883
No_of_seqs 574 out of 3887
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 12:31:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.8E-87 8.2E-92 783.9 46.9 755 24-836 16-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.6E-59 7.8E-64 579.9 45.4 478 188-702 184-711 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.2E-44 1.3E-48 381.4 13.5 278 193-477 1-285 (287)
4 KOG0444 Cytoskeletal regulator 99.8 3.6E-22 7.9E-27 212.0 -3.5 304 546-876 55-376 (1255)
5 PLN00113 leucine-rich repeat r 99.8 9E-20 2E-24 228.1 14.9 248 600-872 139-390 (968)
6 PLN00113 leucine-rich repeat r 99.8 1.5E-19 3.2E-24 226.2 13.8 294 546-873 118-415 (968)
7 KOG0444 Cytoskeletal regulator 99.7 3.5E-20 7.6E-25 197.1 -6.8 271 566-871 50-348 (1255)
8 PLN03210 Resistant to P. syrin 99.7 4.2E-16 9.1E-21 195.2 24.4 95 594-690 627-723 (1153)
9 KOG4194 Membrane glycoprotein 99.7 1.7E-17 3.7E-22 176.0 4.8 250 595-871 143-425 (873)
10 KOG0472 Leucine-rich repeat pr 99.6 1.3E-17 2.9E-22 169.5 -9.3 234 597-843 64-308 (565)
11 KOG0472 Leucine-rich repeat pr 99.6 2.2E-16 4.8E-21 160.7 -2.4 106 591-700 196-302 (565)
12 KOG4194 Membrane glycoprotein 99.5 2.8E-15 6.1E-20 159.5 3.3 242 599-871 123-374 (873)
13 PRK04841 transcriptional regul 99.5 1.8E-12 3.8E-17 161.7 26.1 292 188-524 14-332 (903)
14 KOG0618 Serine/threonine phosp 99.4 3.7E-15 7.9E-20 167.2 -6.8 245 600-874 240-488 (1081)
15 KOG0617 Ras suppressor protein 99.4 7.5E-15 1.6E-19 132.5 -4.5 156 564-730 26-182 (264)
16 KOG0618 Serine/threonine phosp 99.4 2.4E-14 5.1E-19 160.8 -2.6 251 599-871 43-319 (1081)
17 PRK00411 cdc6 cell division co 99.3 3.8E-10 8.3E-15 126.2 25.8 302 185-503 27-358 (394)
18 PRK15370 E3 ubiquitin-protein 99.3 2.4E-12 5.3E-17 150.8 8.3 83 601-691 220-302 (754)
19 PRK15387 E3 ubiquitin-protein 99.3 8.8E-12 1.9E-16 145.1 12.7 230 601-873 222-456 (788)
20 KOG0617 Ras suppressor protein 99.3 4.4E-14 9.6E-19 127.6 -6.2 88 594-682 26-113 (264)
21 KOG4658 Apoptotic ATPase [Sign 99.3 1.1E-12 2.3E-17 156.2 3.3 235 599-849 543-787 (889)
22 TIGR02928 orc1/cdc6 family rep 99.2 4.4E-09 9.6E-14 116.4 27.8 305 184-504 11-351 (365)
23 KOG4237 Extracellular matrix p 99.2 7E-13 1.5E-17 135.5 -3.0 85 780-873 270-357 (498)
24 TIGR03015 pepcterm_ATPase puta 99.2 1.6E-09 3.4E-14 114.5 21.5 182 215-401 43-242 (269)
25 PRK15370 E3 ubiquitin-protein 99.2 4.8E-11 1E-15 140.0 10.5 198 601-871 199-397 (754)
26 PRK15387 E3 ubiquitin-protein 99.1 3.7E-10 8E-15 131.7 14.3 239 545-847 221-460 (788)
27 PF01637 Arch_ATPase: Archaeal 99.1 2.1E-10 4.7E-15 118.4 9.9 194 190-396 1-233 (234)
28 TIGR00635 ruvB Holliday juncti 99.1 2.1E-09 4.5E-14 115.7 16.5 277 188-504 4-290 (305)
29 PRK00080 ruvB Holliday junctio 99.1 3.2E-09 6.9E-14 114.9 17.3 277 188-504 25-311 (328)
30 COG2909 MalT ATP-dependent tra 99.1 1E-08 2.3E-13 116.0 21.1 288 198-524 25-338 (894)
31 cd00116 LRR_RI Leucine-rich re 99.0 3.9E-11 8.5E-16 130.5 -0.7 120 743-872 187-317 (319)
32 KOG4237 Extracellular matrix p 99.0 1.5E-11 3.3E-16 125.8 -5.0 106 593-700 82-193 (498)
33 PTZ00112 origin recognition co 98.9 1.9E-07 4E-12 106.8 24.8 306 184-504 751-1087(1164)
34 cd00116 LRR_RI Leucine-rich re 98.9 8.2E-11 1.8E-15 127.9 -1.9 241 599-872 21-288 (319)
35 PF05729 NACHT: NACHT domain 98.9 6E-09 1.3E-13 101.2 11.2 142 216-363 1-162 (166)
36 COG3899 Predicted ATPase [Gene 98.9 4.3E-08 9.4E-13 117.7 18.1 309 189-522 1-384 (849)
37 COG4886 Leucine-rich repeat (L 98.7 7.9E-09 1.7E-13 115.8 4.8 185 595-827 110-295 (394)
38 PRK06893 DNA replication initi 98.7 2.9E-07 6.3E-12 93.9 15.2 153 215-398 39-204 (229)
39 KOG0532 Leucine-rich repeat (L 98.6 1.1E-09 2.3E-14 117.6 -5.2 105 593-700 90-194 (722)
40 PF13401 AAA_22: AAA domain; P 98.6 1.1E-07 2.4E-12 88.1 7.8 117 215-333 4-125 (131)
41 PF14580 LRR_9: Leucine-rich r 98.6 3.4E-08 7.3E-13 94.5 4.3 105 599-706 40-151 (175)
42 PRK13342 recombination factor 98.6 1.2E-06 2.7E-11 97.8 16.8 177 188-398 12-197 (413)
43 COG2256 MGS1 ATPase related to 98.6 9.5E-07 2.1E-11 92.3 14.3 153 214-392 47-207 (436)
44 PRK05564 DNA polymerase III su 98.6 2E-06 4.3E-11 92.5 17.1 180 188-397 4-190 (313)
45 PF14580 LRR_9: Leucine-rich r 98.6 3.3E-08 7.1E-13 94.6 2.9 84 599-686 17-102 (175)
46 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.2E-06 2.7E-11 89.7 14.2 169 193-398 22-202 (226)
47 PF13191 AAA_16: AAA ATPase do 98.5 1.6E-07 3.4E-12 93.0 7.3 48 189-239 1-48 (185)
48 KOG1259 Nischarin, modulator o 98.5 1.6E-08 3.4E-13 100.2 -0.7 110 743-873 301-410 (490)
49 PRK14961 DNA polymerase III su 98.5 5.7E-06 1.2E-10 90.7 18.6 190 188-394 16-217 (363)
50 KOG0532 Leucine-rich repeat (L 98.5 4.5E-09 9.8E-14 112.9 -6.4 193 600-842 74-270 (722)
51 cd00009 AAA The AAA+ (ATPases 98.4 1.5E-06 3.3E-11 82.2 11.3 125 191-335 1-131 (151)
52 PF13173 AAA_14: AAA domain 98.4 5.8E-07 1.3E-11 82.7 7.8 119 216-356 3-127 (128)
53 PRK07003 DNA polymerase III su 98.4 8.6E-06 1.9E-10 93.2 18.6 180 188-397 16-221 (830)
54 PRK14960 DNA polymerase III su 98.4 5.7E-06 1.2E-10 93.6 16.6 192 188-395 15-217 (702)
55 PRK12402 replication factor C 98.4 5.6E-06 1.2E-10 90.7 16.4 197 188-395 15-224 (337)
56 PRK14949 DNA polymerase III su 98.4 6E-06 1.3E-10 96.4 17.0 182 188-396 16-219 (944)
57 COG4886 Leucine-rich repeat (L 98.4 2.2E-07 4.8E-12 104.1 5.1 200 604-851 96-296 (394)
58 COG3903 Predicted ATPase [Gene 98.4 4.6E-07 9.9E-12 95.4 6.9 291 214-524 13-314 (414)
59 PRK04195 replication factor C 98.4 3.8E-05 8.3E-10 87.7 23.1 247 188-476 14-271 (482)
60 KOG3207 Beta-tubulin folding c 98.4 7.3E-08 1.6E-12 100.8 0.8 61 621-682 118-183 (505)
61 PRK14963 DNA polymerase III su 98.4 1.3E-06 2.8E-11 98.8 10.6 194 188-394 14-214 (504)
62 TIGR02903 spore_lon_C ATP-depe 98.4 9.1E-06 2E-10 94.7 17.4 201 188-399 154-397 (615)
63 COG1474 CDC6 Cdc6-related prot 98.4 1.4E-05 3E-10 86.5 17.6 209 184-396 13-237 (366)
64 PRK12323 DNA polymerase III su 98.3 9.4E-06 2E-10 91.7 16.0 199 188-397 16-225 (700)
65 PTZ00202 tuzin; Provisional 98.3 4.3E-05 9.3E-10 81.6 19.9 165 187-363 261-433 (550)
66 PLN03025 replication factor C 98.3 9.3E-06 2E-10 87.6 14.8 181 188-393 13-196 (319)
67 cd01128 rho_factor Transcripti 98.3 9.6E-07 2.1E-11 90.2 6.6 89 215-304 16-113 (249)
68 PRK00440 rfc replication facto 98.3 2.3E-05 4.9E-10 85.1 17.2 180 188-394 17-200 (319)
69 PF13855 LRR_8: Leucine rich r 98.3 9E-07 1.9E-11 69.3 4.5 56 602-657 2-59 (61)
70 PRK09376 rho transcription ter 98.3 2.3E-06 4.9E-11 90.9 8.5 100 199-304 158-266 (416)
71 PRK06645 DNA polymerase III su 98.3 3.1E-05 6.6E-10 87.3 17.9 194 188-394 21-226 (507)
72 PRK14957 DNA polymerase III su 98.3 2.4E-05 5.2E-10 88.7 17.1 184 188-398 16-222 (546)
73 PRK08727 hypothetical protein; 98.3 2.7E-05 5.7E-10 79.7 16.0 148 216-394 42-201 (233)
74 PF05496 RuvB_N: Holliday junc 98.3 1.6E-05 3.5E-10 77.8 13.4 181 188-401 24-225 (233)
75 PRK07940 DNA polymerase III su 98.2 2.9E-05 6.2E-10 85.0 16.9 192 188-397 5-213 (394)
76 PRK07471 DNA polymerase III su 98.2 4.2E-05 9.2E-10 83.0 17.8 196 188-397 19-238 (365)
77 PRK08691 DNA polymerase III su 98.2 1.8E-05 3.9E-10 90.6 15.5 178 188-395 16-218 (709)
78 KOG1909 Ran GTPase-activating 98.2 6.6E-08 1.4E-12 98.5 -3.7 251 598-873 27-309 (382)
79 PRK07994 DNA polymerase III su 98.2 2.5E-05 5.4E-10 89.9 16.3 194 188-397 16-220 (647)
80 PRK13341 recombination factor 98.2 1.1E-05 2.4E-10 94.8 13.7 172 188-392 28-212 (725)
81 KOG3207 Beta-tubulin folding c 98.2 2.9E-07 6.4E-12 96.4 0.5 84 599-682 170-257 (505)
82 PRK08084 DNA replication initi 98.2 3.4E-05 7.4E-10 79.0 15.7 153 215-398 45-210 (235)
83 TIGR02397 dnaX_nterm DNA polym 98.2 5.8E-05 1.3E-09 83.3 18.6 183 188-397 14-218 (355)
84 TIGR00678 holB DNA polymerase 98.2 4.8E-05 1E-09 75.3 16.2 90 293-392 95-186 (188)
85 PRK14951 DNA polymerase III su 98.2 3.6E-05 7.8E-10 88.5 17.3 196 188-396 16-224 (618)
86 PRK05896 DNA polymerase III su 98.2 3.9E-05 8.4E-10 87.0 17.1 195 188-398 16-222 (605)
87 PRK14964 DNA polymerase III su 98.2 4.5E-05 9.8E-10 85.2 17.4 181 188-394 13-214 (491)
88 KOG1259 Nischarin, modulator o 98.2 4.1E-07 9E-12 90.3 0.9 85 597-682 210-318 (490)
89 PRK14962 DNA polymerase III su 98.2 2.6E-05 5.6E-10 87.5 15.3 186 188-400 14-222 (472)
90 PLN03150 hypothetical protein; 98.2 1.8E-06 4E-11 101.4 6.4 93 602-694 419-513 (623)
91 PRK14956 DNA polymerase III su 98.2 2.5E-05 5.4E-10 86.1 14.6 191 188-394 18-219 (484)
92 PLN03150 hypothetical protein; 98.2 3E-06 6.4E-11 99.6 8.0 99 589-687 430-531 (623)
93 PRK09112 DNA polymerase III su 98.2 9.3E-05 2E-09 79.9 18.7 195 188-397 23-240 (351)
94 PRK14958 DNA polymerase III su 98.2 4.1E-05 8.8E-10 87.0 16.3 182 188-395 16-218 (509)
95 PRK08903 DnaA regulatory inact 98.1 4.5E-05 9.9E-10 78.1 14.8 152 215-401 42-203 (227)
96 KOG2028 ATPase related to the 98.1 4.2E-05 9E-10 78.5 13.3 157 214-392 161-331 (554)
97 PRK09087 hypothetical protein; 98.1 2.4E-05 5.2E-10 79.3 11.8 141 215-397 44-195 (226)
98 KOG2120 SCF ubiquitin ligase, 98.1 1.1E-07 2.4E-12 94.4 -5.0 82 601-682 185-271 (419)
99 KOG0531 Protein phosphatase 1, 98.1 4E-07 8.6E-12 102.2 -1.4 103 594-700 88-191 (414)
100 PRK05642 DNA replication initi 98.1 7.2E-05 1.6E-09 76.5 15.2 152 216-398 46-209 (234)
101 PF13855 LRR_8: Leucine rich r 98.1 3E-06 6.5E-11 66.4 3.8 58 624-682 1-60 (61)
102 PRK14955 DNA polymerase III su 98.1 5.1E-05 1.1E-09 84.2 14.6 197 188-394 16-225 (397)
103 PRK09111 DNA polymerase III su 98.1 8E-05 1.7E-09 85.9 16.5 196 188-396 24-232 (598)
104 PRK14969 DNA polymerase III su 98.1 8E-05 1.7E-09 85.2 16.0 180 188-393 16-216 (527)
105 TIGR00767 rho transcription te 98.0 2.1E-05 4.4E-10 84.3 9.6 90 215-305 168-266 (415)
106 PRK11331 5-methylcytosine-spec 98.0 2.8E-05 6.1E-10 84.7 10.2 117 188-316 175-295 (459)
107 PRK14950 DNA polymerase III su 98.0 0.00023 4.9E-09 83.0 18.5 194 188-397 16-221 (585)
108 TIGR01242 26Sp45 26S proteasom 98.0 6.3E-05 1.4E-09 82.8 13.2 179 188-391 122-328 (364)
109 KOG2120 SCF ubiquitin ligase, 98.0 1.8E-07 3.9E-12 92.9 -6.3 58 625-682 186-245 (419)
110 PRK14970 DNA polymerase III su 98.0 0.00026 5.6E-09 78.3 17.8 180 188-393 17-205 (367)
111 PRK14952 DNA polymerase III su 98.0 0.00026 5.6E-09 81.3 18.0 197 188-400 13-223 (584)
112 KOG2227 Pre-initiation complex 98.0 0.00026 5.7E-09 75.7 16.6 200 187-391 149-362 (529)
113 PF12799 LRR_4: Leucine Rich r 98.0 7.1E-06 1.5E-10 58.8 3.5 39 602-640 2-40 (44)
114 PRK15386 type III secretion pr 98.0 1.9E-05 4E-10 85.1 8.0 61 599-664 50-111 (426)
115 PF00308 Bac_DnaA: Bacterial d 97.9 0.00015 3.3E-09 73.2 14.0 161 215-397 34-208 (219)
116 KOG4341 F-box protein containi 97.9 2.9E-07 6.3E-12 95.9 -5.7 263 589-868 177-458 (483)
117 PRK14959 DNA polymerase III su 97.9 0.00023 5E-09 81.3 16.9 197 188-401 16-225 (624)
118 PF05621 TniB: Bacterial TniB 97.9 0.00025 5.5E-09 73.0 15.4 195 195-394 44-258 (302)
119 PRK07764 DNA polymerase III su 97.9 0.00023 5.1E-09 84.9 17.4 190 188-394 15-218 (824)
120 PRK14954 DNA polymerase III su 97.9 0.00025 5.5E-09 81.9 17.1 196 188-392 16-223 (620)
121 PRK07133 DNA polymerase III su 97.9 0.00036 7.9E-09 81.0 18.3 188 188-394 18-216 (725)
122 PRK14953 DNA polymerase III su 97.9 0.0005 1.1E-08 77.7 18.8 183 188-397 16-220 (486)
123 CHL00181 cbbX CbbX; Provisiona 97.9 0.00043 9.3E-09 72.9 16.9 134 216-365 60-210 (287)
124 TIGR02881 spore_V_K stage V sp 97.9 0.00018 3.9E-09 75.2 13.9 162 188-365 6-192 (261)
125 COG2255 RuvB Holliday junction 97.9 0.00017 3.7E-09 72.1 12.6 174 188-394 26-220 (332)
126 PRK14971 DNA polymerase III su 97.9 0.0005 1.1E-08 80.0 18.1 176 188-394 17-219 (614)
127 PRK14087 dnaA chromosomal repl 97.9 0.00028 6.1E-09 79.2 15.4 165 216-398 142-320 (450)
128 KOG1909 Ran GTPase-activating 97.9 1.8E-06 3.9E-11 88.2 -1.9 227 618-872 24-280 (382)
129 KOG0531 Protein phosphatase 1, 97.8 3.8E-06 8.3E-11 94.3 0.3 83 597-682 114-197 (414)
130 PHA02544 44 clamp loader, smal 97.8 0.00023 5.1E-09 77.0 14.2 148 188-362 21-171 (316)
131 KOG1859 Leucine-rich repeat pr 97.8 7.2E-07 1.6E-11 98.8 -5.9 91 594-688 102-225 (1096)
132 PRK08451 DNA polymerase III su 97.8 0.00073 1.6E-08 76.4 17.7 180 188-397 14-218 (535)
133 PRK14948 DNA polymerase III su 97.8 0.00076 1.6E-08 78.5 18.2 196 188-397 16-222 (620)
134 KOG2982 Uncharacterized conser 97.8 9E-06 2E-10 81.1 1.8 202 599-840 69-287 (418)
135 PF12799 LRR_4: Leucine Rich r 97.8 2.3E-05 4.9E-10 56.2 3.3 40 624-664 1-40 (44)
136 PRK06305 DNA polymerase III su 97.8 0.00065 1.4E-08 76.3 16.6 181 188-396 17-222 (451)
137 TIGR02880 cbbX_cfxQ probable R 97.8 0.0007 1.5E-08 71.4 15.6 133 217-365 60-209 (284)
138 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00026 5.7E-09 85.6 13.6 181 188-391 187-390 (852)
139 PRK06647 DNA polymerase III su 97.7 0.0012 2.5E-08 76.1 18.2 192 188-395 16-218 (563)
140 PF14516 AAA_35: AAA-like doma 97.7 0.0072 1.6E-07 65.4 23.2 200 188-404 11-246 (331)
141 TIGR02639 ClpA ATP-dependent C 97.7 0.00026 5.6E-09 85.1 13.0 156 188-364 182-358 (731)
142 KOG2543 Origin recognition com 97.7 0.00021 4.6E-09 74.4 10.3 167 187-363 5-192 (438)
143 PRK06620 hypothetical protein; 97.7 0.00057 1.2E-08 68.7 13.2 135 216-394 45-186 (214)
144 PRK03992 proteasome-activating 97.7 0.00036 7.8E-09 77.2 12.8 178 188-390 131-336 (389)
145 KOG0989 Replication factor C, 97.7 0.00032 7E-09 71.0 10.9 184 188-392 36-225 (346)
146 KOG4341 F-box protein containi 97.7 1.9E-06 4.1E-11 90.0 -5.1 257 599-875 162-439 (483)
147 KOG4579 Leucine-rich repeat (L 97.7 3.7E-06 8.1E-11 74.2 -2.6 93 603-697 29-125 (177)
148 CHL00095 clpC Clp protease ATP 97.7 0.0004 8.6E-09 84.5 13.5 156 188-363 179-353 (821)
149 PRK14965 DNA polymerase III su 97.6 0.0012 2.5E-08 76.7 16.8 194 188-397 16-221 (576)
150 PRK05563 DNA polymerase III su 97.6 0.002 4.3E-08 74.5 18.4 192 188-395 16-218 (559)
151 PRK05707 DNA polymerase III su 97.6 0.0012 2.6E-08 70.8 15.5 97 293-397 105-203 (328)
152 TIGR00362 DnaA chromosomal rep 97.6 0.00078 1.7E-08 75.4 14.8 158 215-394 136-307 (405)
153 PF05673 DUF815: Protein of un 97.6 0.0014 2.9E-08 65.5 14.4 105 188-319 27-132 (249)
154 KOG3665 ZYG-1-like serine/thre 97.6 3.3E-05 7.1E-10 90.5 2.6 129 546-682 122-261 (699)
155 PRK14088 dnaA chromosomal repl 97.6 0.0016 3.4E-08 73.2 15.8 158 216-394 131-302 (440)
156 PRK12422 chromosomal replicati 97.6 0.00068 1.5E-08 75.9 12.7 154 215-390 141-306 (445)
157 PRK07399 DNA polymerase III su 97.5 0.0033 7.1E-08 67.1 17.1 197 188-397 4-221 (314)
158 KOG2982 Uncharacterized conser 97.5 2.2E-05 4.9E-10 78.4 0.6 232 600-868 44-285 (418)
159 PRK14086 dnaA chromosomal repl 97.5 0.0015 3.4E-08 74.4 15.3 156 216-393 315-484 (617)
160 PRK00149 dnaA chromosomal repl 97.5 0.0011 2.4E-08 75.2 14.2 158 215-394 148-319 (450)
161 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00098 2.1E-08 81.4 14.6 154 188-363 173-348 (852)
162 KOG3665 ZYG-1-like serine/thre 97.5 4E-05 8.6E-10 89.8 2.4 132 624-758 122-259 (699)
163 PRK11034 clpA ATP-dependent Cl 97.5 0.00072 1.6E-08 80.2 12.5 156 188-364 186-362 (758)
164 COG0466 Lon ATP-dependent Lon 97.5 0.00065 1.4E-08 76.7 10.5 167 187-365 322-509 (782)
165 smart00382 AAA ATPases associa 97.4 0.0006 1.3E-08 63.6 9.0 88 216-307 3-91 (148)
166 PRK08058 DNA polymerase III su 97.4 0.0021 4.6E-08 69.4 14.2 163 189-363 6-181 (329)
167 TIGR00763 lon ATP-dependent pr 97.4 0.0042 9.2E-08 75.2 18.1 164 188-363 320-504 (775)
168 KOG4579 Leucine-rich repeat (L 97.4 2.1E-05 4.5E-10 69.6 -1.3 95 594-690 46-141 (177)
169 PF00004 AAA: ATPase family as 97.4 0.00025 5.5E-09 65.5 6.0 21 218-238 1-21 (132)
170 COG0593 DnaA ATPase involved i 97.4 0.0018 3.9E-08 70.2 12.8 137 214-367 112-260 (408)
171 PRK15386 type III secretion pr 97.4 0.00059 1.3E-08 73.7 9.1 66 620-690 48-113 (426)
172 PRK08116 hypothetical protein; 97.4 0.0007 1.5E-08 70.6 9.3 103 216-333 115-220 (268)
173 PRK10865 protein disaggregatio 97.4 0.0019 4.2E-08 78.5 14.4 154 188-364 178-354 (857)
174 PRK08769 DNA polymerase III su 97.4 0.007 1.5E-07 64.4 16.5 181 196-398 12-209 (319)
175 PRK10536 hypothetical protein; 97.3 0.0014 2.9E-08 66.4 10.5 136 188-334 55-213 (262)
176 KOG2004 Mitochondrial ATP-depe 97.3 0.0077 1.7E-07 68.0 17.0 107 186-304 409-515 (906)
177 PRK10787 DNA-binding ATP-depen 97.3 0.0018 3.8E-08 77.7 12.6 166 187-364 321-506 (784)
178 COG3267 ExeA Type II secretory 97.3 0.013 2.7E-07 58.5 16.1 181 214-399 50-247 (269)
179 PRK06090 DNA polymerase III su 97.3 0.009 1.9E-07 63.4 16.3 176 196-397 11-201 (319)
180 TIGR00602 rad24 checkpoint pro 97.3 0.0014 3.1E-08 75.7 11.2 50 188-238 84-133 (637)
181 COG1373 Predicted ATPase (AAA+ 97.2 0.0051 1.1E-07 68.1 14.1 224 217-502 39-269 (398)
182 PRK08118 topology modulation p 97.2 0.00058 1.3E-08 65.8 5.8 34 217-250 3-37 (167)
183 PF13177 DNA_pol3_delta2: DNA 97.2 0.0045 9.8E-08 59.3 11.9 139 192-352 1-162 (162)
184 PRK06871 DNA polymerase III su 97.2 0.017 3.6E-07 61.6 17.0 175 197-394 11-200 (325)
185 TIGR03689 pup_AAA proteasome A 97.2 0.003 6.4E-08 71.2 11.9 165 188-364 182-378 (512)
186 KOG1859 Leucine-rich repeat pr 97.1 6.1E-05 1.3E-09 84.1 -1.8 84 596-682 204-290 (1096)
187 PTZ00361 26 proteosome regulat 97.1 0.0029 6.4E-08 70.1 11.2 158 188-365 183-368 (438)
188 PF04665 Pox_A32: Poxvirus A32 97.1 0.00079 1.7E-08 67.7 5.8 36 216-253 14-49 (241)
189 PRK07993 DNA polymerase III su 97.1 0.021 4.5E-07 61.5 16.9 177 196-395 10-202 (334)
190 PRK08181 transposase; Validate 97.0 0.0017 3.8E-08 67.2 7.8 100 216-333 107-208 (269)
191 KOG0741 AAA+-type ATPase [Post 97.0 0.019 4.1E-07 62.6 15.6 150 212-388 535-705 (744)
192 TIGR01241 FtsH_fam ATP-depende 97.0 0.016 3.4E-07 66.7 16.3 178 188-390 55-259 (495)
193 PF01695 IstB_IS21: IstB-like 97.0 0.0013 2.7E-08 64.0 6.3 99 216-333 48-149 (178)
194 PTZ00454 26S protease regulato 97.0 0.0049 1.1E-07 67.9 11.5 179 188-391 145-351 (398)
195 PRK08939 primosomal protein Dn 97.0 0.0034 7.4E-08 66.6 9.9 122 192-333 135-260 (306)
196 CHL00176 ftsH cell division pr 97.0 0.0091 2E-07 69.7 14.2 177 188-389 183-386 (638)
197 TIGR02640 gas_vesic_GvpN gas v 97.0 0.018 3.9E-07 60.1 14.9 54 197-263 11-64 (262)
198 COG5238 RNA1 Ran GTPase-activa 97.0 0.00025 5.4E-09 70.2 0.9 220 597-843 26-283 (388)
199 PF02562 PhoH: PhoH-like prote 96.9 0.0018 3.9E-08 63.7 6.4 131 192-334 4-156 (205)
200 PRK06526 transposase; Provisio 96.9 0.0019 4.1E-08 66.6 7.0 99 216-333 99-200 (254)
201 PRK09183 transposase/IS protei 96.9 0.0033 7.1E-08 65.3 8.7 100 216-333 103-205 (259)
202 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00079 1.7E-08 71.6 4.2 55 185-239 48-102 (361)
203 PRK13531 regulatory ATPase Rav 96.9 0.0043 9.4E-08 68.6 9.9 42 189-238 21-62 (498)
204 PRK06964 DNA polymerase III su 96.9 0.025 5.4E-07 60.8 15.2 93 293-397 131-225 (342)
205 PRK06921 hypothetical protein; 96.8 0.004 8.7E-08 64.8 8.7 99 215-333 117-224 (266)
206 KOG1644 U2-associated snRNP A' 96.8 0.0011 2.4E-08 63.1 4.0 96 773-872 53-150 (233)
207 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0041 8.8E-08 75.5 10.0 124 188-321 566-695 (852)
208 PRK04296 thymidine kinase; Pro 96.8 0.003 6.6E-08 62.3 7.2 113 216-335 3-117 (190)
209 TIGR02237 recomb_radB DNA repa 96.8 0.0046 1E-07 62.3 8.8 49 213-264 10-58 (209)
210 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0059 1.3E-07 74.7 11.2 122 188-320 565-693 (852)
211 PRK12608 transcription termina 96.8 0.0079 1.7E-07 64.4 10.5 102 196-303 119-229 (380)
212 PRK07952 DNA replication prote 96.8 0.0062 1.3E-07 62.2 9.3 103 215-333 99-204 (244)
213 PRK07261 topology modulation p 96.8 0.0031 6.7E-08 61.1 6.6 66 217-305 2-68 (171)
214 KOG1644 U2-associated snRNP A' 96.7 0.0019 4.2E-08 61.5 4.8 98 600-700 41-145 (233)
215 PRK09361 radB DNA repair and r 96.7 0.0082 1.8E-07 61.3 9.7 46 214-262 22-67 (225)
216 PRK10865 protein disaggregatio 96.7 0.0069 1.5E-07 73.8 10.6 125 188-320 568-696 (857)
217 PF10443 RNA12: RNA12 protein; 96.7 0.056 1.2E-06 58.6 15.8 207 193-415 1-297 (431)
218 PRK12377 putative replication 96.7 0.0038 8.2E-08 63.9 6.7 101 216-333 102-205 (248)
219 COG1222 RPT1 ATP-dependent 26S 96.7 0.019 4.2E-07 59.8 11.7 189 188-402 151-372 (406)
220 cd01393 recA_like RecA is a b 96.6 0.014 3.1E-07 59.5 10.7 88 214-304 18-124 (226)
221 TIGR02639 ClpA ATP-dependent C 96.6 0.012 2.5E-07 71.0 11.2 120 188-320 454-579 (731)
222 COG2607 Predicted ATPase (AAA+ 96.5 0.013 2.9E-07 57.5 9.0 119 188-333 60-182 (287)
223 COG0542 clpA ATP-binding subun 96.5 0.0074 1.6E-07 70.4 8.6 122 188-321 491-620 (786)
224 KOG0991 Replication factor C, 96.5 0.029 6.3E-07 54.7 11.1 44 188-237 27-70 (333)
225 PRK05541 adenylylsulfate kinas 96.5 0.0046 1E-07 60.4 6.1 36 214-251 6-41 (176)
226 CHL00095 clpC Clp protease ATP 96.5 0.012 2.5E-07 72.0 10.5 123 188-320 509-637 (821)
227 PF13207 AAA_17: AAA domain; P 96.5 0.002 4.4E-08 58.4 3.0 22 217-238 1-22 (121)
228 PRK04132 replication factor C 96.5 0.067 1.4E-06 64.0 16.2 155 221-395 570-729 (846)
229 PRK11889 flhF flagellar biosyn 96.5 0.03 6.5E-07 60.3 12.0 89 214-305 240-331 (436)
230 PF07728 AAA_5: AAA domain (dy 96.4 0.0017 3.7E-08 60.6 2.4 88 218-318 2-89 (139)
231 PRK06835 DNA replication prote 96.4 0.0037 8E-08 66.9 5.1 102 216-333 184-288 (329)
232 KOG1969 DNA replication checkp 96.4 0.0087 1.9E-07 67.7 8.1 79 211-307 322-400 (877)
233 PRK08699 DNA polymerase III su 96.4 0.047 1E-06 58.6 13.4 71 293-363 112-184 (325)
234 TIGR02902 spore_lonB ATP-depen 96.4 0.012 2.5E-07 67.9 9.1 44 188-237 65-108 (531)
235 COG2812 DnaX DNA polymerase II 96.4 0.015 3.2E-07 65.3 9.5 190 188-393 16-216 (515)
236 cd01394 radB RadB. The archaea 96.4 0.018 3.8E-07 58.5 9.5 43 214-258 18-60 (218)
237 COG0470 HolB ATPase involved i 96.3 0.021 4.5E-07 62.1 10.6 142 189-350 2-167 (325)
238 KOG2228 Origin recognition com 96.3 0.037 8E-07 57.2 11.2 172 188-364 24-219 (408)
239 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.015 3.3E-07 59.7 9.0 51 213-263 17-71 (235)
240 cd01133 F1-ATPase_beta F1 ATP 96.3 0.018 3.9E-07 59.3 9.2 87 215-303 69-172 (274)
241 KOG2123 Uncharacterized conser 96.3 0.00035 7.5E-09 69.5 -3.1 100 601-703 19-125 (388)
242 KOG1514 Origin recognition com 96.3 0.18 3.8E-06 57.5 17.3 208 187-400 395-624 (767)
243 KOG0733 Nuclear AAA ATPase (VC 96.2 0.089 1.9E-06 58.7 14.3 189 188-401 190-410 (802)
244 PHA00729 NTP-binding motif con 96.2 0.011 2.3E-07 59.0 6.7 24 215-238 17-40 (226)
245 TIGR03499 FlhF flagellar biosy 96.2 0.021 4.6E-07 60.1 9.3 87 214-303 193-281 (282)
246 PRK06696 uridine kinase; Valid 96.2 0.0054 1.2E-07 62.4 4.7 44 192-238 2-45 (223)
247 cd03214 ABC_Iron-Siderophores_ 96.2 0.041 9E-07 53.8 10.6 119 215-337 25-161 (180)
248 PF07693 KAP_NTPase: KAP famil 96.1 0.2 4.3E-06 54.4 16.9 42 194-238 2-43 (325)
249 PF00448 SRP54: SRP54-type pro 96.1 0.023 5.1E-07 56.1 8.5 88 215-304 1-93 (196)
250 PRK15455 PrkA family serine pr 96.1 0.0036 7.7E-08 70.1 2.9 50 188-237 76-125 (644)
251 PRK11034 clpA ATP-dependent Cl 96.1 0.025 5.4E-07 67.4 10.1 121 188-319 458-582 (758)
252 cd01131 PilT Pilus retraction 96.1 0.01 2.2E-07 59.0 5.8 112 216-338 2-113 (198)
253 TIGR01243 CDC48 AAA family ATP 96.0 0.034 7.4E-07 67.2 11.3 180 188-392 178-382 (733)
254 KOG2739 Leucine-rich acidic nu 96.0 0.0014 3.1E-08 65.2 -0.4 91 776-871 57-152 (260)
255 COG1875 NYN ribonuclease and A 96.0 0.023 4.9E-07 59.4 8.1 134 190-334 226-388 (436)
256 COG1484 DnaC DNA replication p 96.0 0.029 6.4E-07 57.9 9.1 81 215-312 105-185 (254)
257 PF13604 AAA_30: AAA domain; P 96.0 0.014 3E-07 58.0 6.5 105 216-335 19-132 (196)
258 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.041 8.8E-07 51.6 9.3 104 216-338 27-131 (144)
259 PRK12724 flagellar biosynthesi 96.0 0.027 5.9E-07 61.4 9.0 25 214-238 222-246 (432)
260 TIGR01243 CDC48 AAA family ATP 96.0 0.093 2E-06 63.5 14.6 179 188-391 453-657 (733)
261 KOG2035 Replication factor C, 96.0 0.098 2.1E-06 52.7 11.9 241 189-439 14-282 (351)
262 PRK06067 flagellar accessory p 96.0 0.032 6.9E-07 57.3 9.1 87 213-304 23-130 (234)
263 KOG2739 Leucine-rich acidic nu 96.0 0.0038 8.2E-08 62.3 2.1 81 600-682 42-127 (260)
264 COG1136 SalX ABC-type antimicr 96.0 0.057 1.2E-06 53.8 10.3 60 282-341 148-210 (226)
265 TIGR02012 tigrfam_recA protein 95.9 0.027 6E-07 59.7 8.6 85 213-304 53-143 (321)
266 PF00560 LRR_1: Leucine Rich R 95.9 0.0034 7.4E-08 37.3 1.1 19 626-644 2-20 (22)
267 KOG1947 Leucine rich repeat pr 95.9 0.0017 3.6E-08 75.0 -0.6 61 622-682 186-254 (482)
268 PRK13695 putative NTPase; Prov 95.9 0.01 2.3E-07 57.7 4.8 22 217-238 2-23 (174)
269 cd01120 RecA-like_NTPases RecA 95.9 0.044 9.5E-07 52.4 9.2 39 217-257 1-39 (165)
270 cd00983 recA RecA is a bacter 95.9 0.031 6.7E-07 59.3 8.5 85 213-304 53-143 (325)
271 PRK08233 hypothetical protein; 95.8 0.024 5.1E-07 55.6 7.3 24 215-238 3-26 (182)
272 PF00158 Sigma54_activat: Sigm 95.8 0.023 4.9E-07 54.7 6.8 131 190-333 1-143 (168)
273 COG2884 FtsE Predicted ATPase 95.8 0.091 2E-06 50.0 10.1 60 281-340 142-203 (223)
274 PF08423 Rad51: Rad51; InterP 95.8 0.029 6.4E-07 58.1 7.8 89 214-303 37-142 (256)
275 COG5238 RNA1 Ran GTPase-activa 95.7 0.0014 3.1E-08 65.0 -1.8 222 619-871 25-281 (388)
276 COG0468 RecA RecA/RadA recombi 95.7 0.045 9.7E-07 56.7 9.0 89 213-304 58-151 (279)
277 CHL00195 ycf46 Ycf46; Provisio 95.7 0.063 1.4E-06 60.7 10.9 181 188-391 228-429 (489)
278 PRK09354 recA recombinase A; P 95.7 0.042 9E-07 58.8 8.9 85 213-304 58-148 (349)
279 PRK14722 flhF flagellar biosyn 95.7 0.041 9E-07 59.6 9.0 88 215-306 137-227 (374)
280 COG0542 clpA ATP-binding subun 95.7 0.029 6.2E-07 65.7 8.1 155 188-363 170-345 (786)
281 PRK12727 flagellar biosynthesi 95.7 0.058 1.2E-06 60.5 10.1 89 214-305 349-439 (559)
282 PF14532 Sigma54_activ_2: Sigm 95.7 0.0097 2.1E-07 55.4 3.5 107 191-333 1-109 (138)
283 TIGR01650 PD_CobS cobaltochela 95.6 0.28 6.1E-06 52.0 14.6 64 186-262 43-106 (327)
284 COG1618 Predicted nucleotide k 95.6 0.012 2.7E-07 54.1 3.8 24 215-238 5-28 (179)
285 TIGR02238 recomb_DMC1 meiotic 95.6 0.045 9.7E-07 58.3 8.8 58 213-271 94-155 (313)
286 PRK05703 flhF flagellar biosyn 95.6 0.094 2E-06 58.5 11.7 88 215-305 221-310 (424)
287 cd02025 PanK Pantothenate kina 95.6 0.043 9.3E-07 55.5 8.2 73 217-292 1-76 (220)
288 cd03238 ABC_UvrA The excision 95.6 0.046 1E-06 53.0 8.1 114 215-338 21-153 (176)
289 cd03228 ABCC_MRP_Like The MRP 95.6 0.065 1.4E-06 51.9 9.2 118 215-339 28-160 (171)
290 cd03216 ABC_Carb_Monos_I This 95.6 0.048 1E-06 52.4 8.2 115 216-337 27-145 (163)
291 PHA02244 ATPase-like protein 95.6 0.081 1.7E-06 56.7 10.4 45 186-238 94-142 (383)
292 cd03222 ABC_RNaseL_inhibitor T 95.6 0.07 1.5E-06 51.8 9.3 103 215-338 25-136 (177)
293 PRK10867 signal recognition pa 95.6 0.074 1.6E-06 59.1 10.6 24 214-237 99-122 (433)
294 PF00485 PRK: Phosphoribulokin 95.6 0.041 8.9E-07 54.6 7.9 80 217-298 1-87 (194)
295 TIGR00959 ffh signal recogniti 95.6 0.075 1.6E-06 59.0 10.5 25 214-238 98-122 (428)
296 cd01122 GP4d_helicase GP4d_hel 95.6 0.12 2.6E-06 54.5 11.8 53 215-270 30-82 (271)
297 cd03247 ABCC_cytochrome_bd The 95.6 0.072 1.6E-06 52.0 9.4 117 216-338 29-161 (178)
298 PRK00771 signal recognition pa 95.6 0.11 2.5E-06 57.7 11.9 87 214-304 94-185 (437)
299 PF05659 RPW8: Arabidopsis bro 95.6 0.21 4.5E-06 46.5 11.7 82 5-86 3-85 (147)
300 cd03223 ABCD_peroxisomal_ALDP 95.5 0.099 2.1E-06 50.4 10.2 117 215-338 27-152 (166)
301 COG1223 Predicted ATPase (AAA+ 95.5 0.18 3.9E-06 50.3 11.7 178 188-390 121-318 (368)
302 PRK05439 pantothenate kinase; 95.5 0.08 1.7E-06 55.9 9.8 80 213-295 84-166 (311)
303 COG0572 Udk Uridine kinase [Nu 95.5 0.03 6.4E-07 55.2 6.1 77 214-295 7-85 (218)
304 PRK12726 flagellar biosynthesi 95.5 0.12 2.5E-06 55.6 11.0 90 214-305 205-296 (407)
305 PRK04301 radA DNA repair and r 95.5 0.047 1E-06 58.8 8.3 56 214-270 101-160 (317)
306 cd03115 SRP The signal recogni 95.4 0.1 2.2E-06 50.6 10.0 22 217-238 2-23 (173)
307 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.077 1.7E-06 50.0 8.4 117 216-335 3-139 (159)
308 PRK09270 nucleoside triphospha 95.4 0.069 1.5E-06 54.6 8.9 26 213-238 31-56 (229)
309 cd03246 ABCC_Protease_Secretio 95.3 0.06 1.3E-06 52.3 7.8 118 216-338 29-160 (173)
310 PRK07132 DNA polymerase III su 95.3 0.85 1.8E-05 48.2 16.8 157 215-397 18-185 (299)
311 PRK12723 flagellar biosynthesi 95.3 0.12 2.6E-06 56.6 10.8 90 214-306 173-266 (388)
312 PRK07667 uridine kinase; Provi 95.3 0.021 4.5E-07 56.6 4.6 38 197-238 3-40 (193)
313 cd03230 ABC_DR_subfamily_A Thi 95.3 0.057 1.2E-06 52.4 7.7 118 215-338 26-159 (173)
314 TIGR00554 panK_bact pantothena 95.3 0.081 1.7E-06 55.5 9.1 78 214-294 61-141 (290)
315 PLN03187 meiotic recombination 95.2 0.15 3.3E-06 54.8 10.9 58 213-271 124-185 (344)
316 PF13238 AAA_18: AAA domain; P 95.1 0.014 3.1E-07 53.3 2.8 21 218-238 1-21 (129)
317 PTZ00494 tuzin-like protein; P 95.1 0.91 2E-05 49.3 16.1 166 186-363 369-543 (664)
318 PRK14974 cell division protein 95.1 0.17 3.7E-06 54.3 11.1 90 214-306 139-234 (336)
319 cd01125 repA Hexameric Replica 95.1 0.13 2.9E-06 52.9 10.1 22 217-238 3-24 (239)
320 PTZ00301 uridine kinase; Provi 95.1 0.029 6.2E-07 56.1 4.9 23 215-237 3-25 (210)
321 KOG0734 AAA+-type ATPase conta 95.1 0.068 1.5E-06 58.5 7.9 51 188-238 304-360 (752)
322 TIGR02236 recomb_radA DNA repa 95.1 0.11 2.3E-06 55.9 9.7 56 214-270 94-153 (310)
323 cd02019 NK Nucleoside/nucleoti 95.1 0.015 3.2E-07 46.6 2.3 22 217-238 1-22 (69)
324 PF13671 AAA_33: AAA domain; P 95.0 0.018 3.9E-07 53.9 3.2 21 217-237 1-21 (143)
325 KOG0731 AAA+-type ATPase conta 95.0 0.25 5.4E-06 57.7 12.6 181 188-393 311-520 (774)
326 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.05 1.1E-06 54.7 6.3 121 215-340 29-160 (213)
327 PF00006 ATP-synt_ab: ATP synt 95.0 0.071 1.5E-06 53.3 7.3 84 216-303 16-114 (215)
328 TIGR01817 nifA Nif-specific re 95.0 0.12 2.6E-06 60.2 10.4 133 188-333 196-340 (534)
329 KOG0735 AAA+-type ATPase [Post 95.0 0.047 1E-06 61.8 6.5 161 215-397 431-616 (952)
330 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.13 2.9E-06 52.7 9.6 49 214-266 20-68 (237)
331 PLN03186 DNA repair protein RA 94.9 0.15 3.3E-06 54.9 10.2 57 214-271 122-182 (342)
332 TIGR00390 hslU ATP-dependent p 94.9 0.069 1.5E-06 58.1 7.4 80 188-269 12-103 (441)
333 COG0563 Adk Adenylate kinase a 94.9 0.034 7.4E-07 53.9 4.6 22 217-238 2-23 (178)
334 cd03229 ABC_Class3 This class 94.9 0.069 1.5E-06 52.1 6.9 23 215-237 26-48 (178)
335 PF08298 AAA_PrkA: PrkA AAA do 94.9 0.03 6.5E-07 59.2 4.4 51 187-237 60-110 (358)
336 TIGR00064 ftsY signal recognit 94.8 0.17 3.6E-06 53.0 9.9 89 214-305 71-165 (272)
337 TIGR00235 udk uridine kinase. 94.8 0.021 4.7E-07 57.3 3.2 25 214-238 5-29 (207)
338 PRK05480 uridine/cytidine kina 94.8 0.023 4.9E-07 57.3 3.4 25 214-238 5-29 (209)
339 PLN00020 ribulose bisphosphate 94.8 0.046 1E-06 58.1 5.7 26 213-238 146-171 (413)
340 PRK15429 formate hydrogenlyase 94.8 0.1 2.2E-06 62.7 9.4 135 188-334 376-521 (686)
341 COG4608 AppF ABC-type oligopep 94.8 0.13 2.9E-06 52.2 8.6 123 215-341 39-177 (268)
342 KOG0730 AAA+-type ATPase [Post 94.8 0.39 8.5E-06 54.5 13.0 160 188-367 434-618 (693)
343 PF00560 LRR_1: Leucine Rich R 94.8 0.012 2.7E-07 34.9 0.8 22 602-623 1-22 (22)
344 PF01583 APS_kinase: Adenylyls 94.8 0.045 9.7E-07 51.4 4.9 36 215-252 2-37 (156)
345 PRK11608 pspF phage shock prot 94.7 0.078 1.7E-06 57.2 7.5 134 188-333 6-150 (326)
346 COG1121 ZnuC ABC-type Mn/Zn tr 94.7 0.074 1.6E-06 53.9 6.7 121 216-338 31-203 (254)
347 KOG1051 Chaperone HSP104 and r 94.7 0.17 3.7E-06 60.3 10.6 122 188-320 562-686 (898)
348 TIGR01069 mutS2 MutS2 family p 94.7 0.033 7.1E-07 66.9 4.7 187 215-415 322-518 (771)
349 PRK00889 adenylylsulfate kinas 94.7 0.082 1.8E-06 51.4 6.8 24 215-238 4-27 (175)
350 cd02028 UMPK_like Uridine mono 94.6 0.057 1.2E-06 52.6 5.6 22 217-238 1-22 (179)
351 TIGR02239 recomb_RAD51 DNA rep 94.6 0.19 4E-06 53.8 9.8 56 214-270 95-154 (316)
352 PRK06547 hypothetical protein; 94.6 0.046 9.9E-07 52.8 4.6 25 214-238 14-38 (172)
353 PRK06762 hypothetical protein; 94.6 0.026 5.7E-07 54.4 3.0 23 215-237 2-24 (166)
354 PTZ00035 Rad51 protein; Provis 94.6 0.27 5.9E-06 53.1 11.0 57 213-270 116-176 (337)
355 PTZ00088 adenylate kinase 1; P 94.5 0.03 6.6E-07 56.7 3.5 22 217-238 8-29 (229)
356 cd02027 APSK Adenosine 5'-phos 94.5 0.088 1.9E-06 49.6 6.4 22 217-238 1-22 (149)
357 PF00154 RecA: recA bacterial 94.5 0.095 2.1E-06 55.5 7.1 86 213-305 51-142 (322)
358 KOG2123 Uncharacterized conser 94.5 0.0048 1E-07 61.7 -2.3 78 599-677 39-123 (388)
359 PRK06002 fliI flagellum-specif 94.5 0.16 3.5E-06 56.2 9.1 86 215-303 165-263 (450)
360 PF08433 KTI12: Chromatin asso 94.5 0.089 1.9E-06 54.7 6.8 23 216-238 2-24 (270)
361 cd03282 ABC_MSH4_euk MutS4 hom 94.4 0.084 1.8E-06 52.6 6.3 120 215-341 29-158 (204)
362 PRK08972 fliI flagellum-specif 94.4 0.14 3E-06 56.4 8.4 85 215-303 162-261 (444)
363 KOG1947 Leucine rich repeat pr 94.4 0.0043 9.3E-08 71.6 -3.4 84 599-682 186-280 (482)
364 cd00267 ABC_ATPase ABC (ATP-bi 94.4 0.11 2.4E-06 49.5 7.0 116 216-339 26-145 (157)
365 PRK03839 putative kinase; Prov 94.4 0.027 5.9E-07 55.1 2.8 22 217-238 2-23 (180)
366 PRK14723 flhF flagellar biosyn 94.4 0.3 6.5E-06 57.7 11.6 87 215-304 185-273 (767)
367 KOG0744 AAA+-type ATPase [Post 94.4 0.097 2.1E-06 53.8 6.5 79 215-303 177-259 (423)
368 COG0464 SpoVK ATPases of the A 94.3 0.39 8.4E-06 55.5 12.5 158 188-365 242-424 (494)
369 COG0467 RAD55 RecA-superfamily 94.3 0.093 2E-06 54.8 6.7 50 213-266 21-70 (260)
370 PRK05201 hslU ATP-dependent pr 94.3 0.085 1.8E-06 57.5 6.4 81 188-270 15-107 (443)
371 cd03369 ABCC_NFT1 Domain 2 of 94.2 0.44 9.6E-06 47.8 11.2 23 215-237 34-56 (207)
372 TIGR01360 aden_kin_iso1 adenyl 94.2 0.036 7.7E-07 54.7 3.2 23 215-237 3-25 (188)
373 cd03217 ABC_FeS_Assembly ABC-t 94.2 0.2 4.4E-06 49.9 8.6 120 215-338 26-168 (200)
374 PRK06731 flhF flagellar biosyn 94.2 0.35 7.5E-06 50.2 10.4 89 215-306 75-166 (270)
375 TIGR02858 spore_III_AA stage I 94.2 0.18 3.9E-06 52.5 8.4 126 196-339 97-234 (270)
376 PRK10733 hflB ATP-dependent me 94.2 0.29 6.4E-06 58.0 11.2 158 188-365 152-336 (644)
377 KOG0733 Nuclear AAA ATPase (VC 94.2 0.23 5E-06 55.5 9.4 182 188-391 511-718 (802)
378 PRK14721 flhF flagellar biosyn 94.1 0.28 6E-06 54.2 10.1 87 214-303 190-278 (420)
379 PF07726 AAA_3: ATPase family 94.1 0.027 5.9E-07 50.3 1.9 27 218-246 2-28 (131)
380 PRK09280 F0F1 ATP synthase sub 94.1 0.22 4.7E-06 55.4 9.2 88 215-303 144-247 (463)
381 PRK04040 adenylate kinase; Pro 94.1 0.038 8.3E-07 54.3 3.1 22 216-237 3-24 (188)
382 COG4088 Predicted nucleotide k 94.1 0.18 3.9E-06 48.6 7.3 22 216-237 2-23 (261)
383 cd03215 ABC_Carb_Monos_II This 94.1 0.17 3.7E-06 49.5 7.8 24 215-238 26-49 (182)
384 PF12775 AAA_7: P-loop contain 94.1 0.031 6.7E-07 58.4 2.6 95 198-311 23-117 (272)
385 TIGR02974 phageshock_pspF psp 94.1 0.13 2.9E-06 55.4 7.5 44 190-237 1-44 (329)
386 PRK00625 shikimate kinase; Pro 94.1 0.034 7.3E-07 53.7 2.6 21 217-237 2-22 (173)
387 PRK12597 F0F1 ATP synthase sub 94.1 0.11 2.3E-06 58.1 6.7 88 215-303 143-246 (461)
388 PRK10463 hydrogenase nickel in 94.0 0.23 4.9E-06 51.8 8.7 86 214-305 103-195 (290)
389 KOG0743 AAA+-type ATPase [Post 94.0 4.9 0.00011 44.1 18.8 23 216-238 236-258 (457)
390 cd01135 V_A-ATPase_B V/A-type 94.0 0.25 5.4E-06 50.9 8.8 89 215-303 69-175 (276)
391 PF13481 AAA_25: AAA domain; P 94.0 0.26 5.6E-06 48.8 9.0 41 216-256 33-81 (193)
392 PRK15453 phosphoribulokinase; 94.0 0.29 6.3E-06 50.5 9.3 77 214-293 4-89 (290)
393 PRK04328 hypothetical protein; 94.0 0.19 4.1E-06 52.0 8.0 41 214-256 22-62 (249)
394 cd03245 ABCC_bacteriocin_expor 94.0 0.41 8.9E-06 48.5 10.5 23 215-237 30-52 (220)
395 cd03240 ABC_Rad50 The catalyti 94.0 0.3 6.5E-06 48.8 9.2 54 286-339 131-188 (204)
396 PRK05022 anaerobic nitric oxid 93.9 0.17 3.6E-06 58.4 8.4 134 188-333 187-331 (509)
397 PRK06995 flhF flagellar biosyn 93.9 0.41 8.9E-06 53.8 11.0 24 215-238 256-279 (484)
398 cd00544 CobU Adenosylcobinamid 93.9 0.15 3.1E-06 49.1 6.6 79 218-303 2-82 (169)
399 TIGR03881 KaiC_arch_4 KaiC dom 93.9 0.33 7.2E-06 49.6 9.7 41 214-256 19-59 (229)
400 TIGR03575 selen_PSTK_euk L-ser 93.9 0.18 3.9E-06 54.1 7.8 21 218-238 2-22 (340)
401 TIGR02868 CydC thiol reductant 93.9 0.23 4.9E-06 58.0 9.5 24 214-237 360-383 (529)
402 COG1428 Deoxynucleoside kinase 93.9 0.04 8.6E-07 53.6 2.6 25 215-239 4-28 (216)
403 COG1066 Sms Predicted ATP-depe 93.9 0.18 3.8E-06 54.1 7.5 83 215-306 93-180 (456)
404 TIGR01420 pilT_fam pilus retra 93.8 0.1 2.2E-06 56.8 6.1 111 216-337 123-233 (343)
405 PTZ00185 ATPase alpha subunit; 93.8 0.37 8E-06 53.7 10.1 90 215-304 189-299 (574)
406 cd03251 ABCC_MsbA MsbA is an e 93.8 0.61 1.3E-05 47.8 11.6 23 215-237 28-50 (234)
407 PF00910 RNA_helicase: RNA hel 93.8 0.034 7.3E-07 49.0 1.9 21 218-238 1-21 (107)
408 PRK05917 DNA polymerase III su 93.8 1.2 2.7E-05 46.5 13.6 134 197-351 6-154 (290)
409 TIGR02322 phosphon_PhnN phosph 93.8 0.043 9.4E-07 53.7 2.8 23 216-238 2-24 (179)
410 TIGR01425 SRP54_euk signal rec 93.8 0.37 8.1E-06 53.2 10.3 24 214-237 99-122 (429)
411 TIGR01359 UMP_CMP_kin_fam UMP- 93.8 0.036 7.8E-07 54.4 2.3 21 217-237 1-21 (183)
412 PF07724 AAA_2: AAA domain (Cd 93.8 0.035 7.7E-07 53.5 2.1 42 215-258 3-45 (171)
413 PF06745 KaiC: KaiC; InterPro 93.8 0.16 3.5E-06 51.8 7.0 49 214-265 18-66 (226)
414 cd03232 ABC_PDR_domain2 The pl 93.7 0.23 5.1E-06 49.1 7.9 23 215-237 33-55 (192)
415 PF03205 MobB: Molybdopterin g 93.7 0.099 2.1E-06 48.5 4.9 39 216-255 1-39 (140)
416 cd02023 UMPK Uridine monophosp 93.7 0.039 8.4E-07 55.0 2.3 21 217-237 1-21 (198)
417 TIGR00150 HI0065_YjeE ATPase, 93.7 0.086 1.9E-06 48.0 4.3 40 195-238 6-45 (133)
418 PRK10751 molybdopterin-guanine 93.7 0.066 1.4E-06 51.3 3.7 25 214-238 5-29 (173)
419 cd01121 Sms Sms (bacterial rad 93.6 0.13 2.9E-06 56.1 6.5 82 214-303 81-167 (372)
420 PF03969 AFG1_ATPase: AFG1-lik 93.6 0.21 4.5E-06 54.4 7.9 104 214-336 61-169 (362)
421 PF03308 ArgK: ArgK protein; 93.6 0.13 2.7E-06 52.1 5.6 40 196-239 14-53 (266)
422 TIGR03522 GldA_ABC_ATP gliding 93.6 0.48 1E-05 50.6 10.6 24 215-238 28-51 (301)
423 PRK00131 aroK shikimate kinase 93.6 0.052 1.1E-06 52.7 3.0 24 215-238 4-27 (175)
424 COG2019 AdkA Archaeal adenylat 93.6 0.058 1.2E-06 50.1 2.9 23 215-237 4-26 (189)
425 cd02024 NRK1 Nicotinamide ribo 93.6 0.043 9.3E-07 53.6 2.2 22 217-238 1-22 (187)
426 PLN02348 phosphoribulokinase 93.5 0.37 7.9E-06 52.3 9.4 25 214-238 48-72 (395)
427 cd02021 GntK Gluconate kinase 93.5 0.045 9.8E-07 51.7 2.4 22 217-238 1-22 (150)
428 PRK08533 flagellar accessory p 93.5 0.36 7.7E-06 49.2 9.0 48 215-266 24-71 (230)
429 TIGR03498 FliI_clade3 flagella 93.5 0.24 5.1E-06 54.8 8.1 85 215-303 140-239 (418)
430 PRK10416 signal recognition pa 93.5 0.3 6.5E-06 52.2 8.7 25 214-238 113-137 (318)
431 cd00227 CPT Chloramphenicol (C 93.5 0.052 1.1E-06 52.8 2.7 23 216-238 3-25 (175)
432 PRK05973 replicative DNA helic 93.4 0.18 4E-06 51.1 6.6 48 215-266 64-111 (237)
433 TIGR03878 thermo_KaiC_2 KaiC d 93.4 0.34 7.5E-06 50.4 8.9 40 214-255 35-74 (259)
434 cd03213 ABCG_EPDR ABCG transpo 93.4 0.4 8.8E-06 47.5 9.1 24 215-238 35-58 (194)
435 cd01136 ATPase_flagellum-secre 93.4 0.43 9.4E-06 50.8 9.7 85 215-303 69-168 (326)
436 PF06309 Torsin: Torsin; Inte 93.4 0.13 2.9E-06 45.9 4.8 51 188-238 25-76 (127)
437 COG1936 Predicted nucleotide k 93.4 0.057 1.2E-06 50.6 2.6 20 217-236 2-21 (180)
438 COG0003 ArsA Predicted ATPase 93.4 0.14 3E-06 54.4 5.9 48 215-264 2-49 (322)
439 PRK10875 recD exonuclease V su 93.4 0.24 5.3E-06 57.7 8.3 115 216-335 168-303 (615)
440 COG0714 MoxR-like ATPases [Gen 93.3 0.14 3.1E-06 55.5 6.1 65 188-265 24-88 (329)
441 PRK06217 hypothetical protein; 93.3 0.053 1.2E-06 53.2 2.5 22 217-238 3-24 (183)
442 cd02029 PRK_like Phosphoribulo 93.3 0.23 4.9E-06 50.8 7.0 76 217-294 1-84 (277)
443 KOG1532 GTPase XAB1, interacts 93.3 0.074 1.6E-06 53.3 3.4 26 213-238 17-42 (366)
444 TIGR03263 guanyl_kin guanylate 93.3 0.06 1.3E-06 52.7 2.9 22 216-237 2-23 (180)
445 COG1102 Cmk Cytidylate kinase 93.2 0.054 1.2E-06 50.0 2.2 43 217-272 2-44 (179)
446 TIGR03305 alt_F1F0_F1_bet alte 93.2 0.29 6.2E-06 54.3 8.2 88 215-303 138-241 (449)
447 PRK00409 recombination and DNA 93.2 0.075 1.6E-06 64.0 4.1 175 214-404 326-513 (782)
448 cd03243 ABC_MutS_homologs The 93.2 0.15 3.2E-06 51.0 5.5 22 216-237 30-51 (202)
449 smart00534 MUTSac ATPase domai 93.2 0.43 9.3E-06 46.9 8.7 119 217-341 1-129 (185)
450 PRK13949 shikimate kinase; Pro 93.2 0.06 1.3E-06 51.9 2.6 22 217-238 3-24 (169)
451 cd01134 V_A-ATPase_A V/A-type 93.1 0.53 1.2E-05 50.1 9.6 59 199-266 146-205 (369)
452 PF13504 LRR_7: Leucine rich r 93.1 0.057 1.2E-06 29.7 1.3 14 626-639 3-16 (17)
453 PF08477 Miro: Miro-like prote 93.1 0.066 1.4E-06 48.1 2.6 22 218-239 2-23 (119)
454 cd00984 DnaB_C DnaB helicase C 93.1 0.63 1.4E-05 47.9 10.3 52 215-269 13-64 (242)
455 PRK07594 type III secretion sy 93.1 0.43 9.3E-06 52.9 9.3 85 215-303 155-254 (433)
456 KOG0736 Peroxisome assembly fa 93.1 2.5 5.3E-05 49.2 15.2 98 188-305 672-775 (953)
457 TIGR00708 cobA cob(I)alamin ad 93.1 0.69 1.5E-05 44.2 9.5 118 215-334 5-140 (173)
458 PF00625 Guanylate_kin: Guanyl 93.1 0.086 1.9E-06 51.7 3.6 36 215-252 2-37 (183)
459 COG1703 ArgK Putative periplas 93.0 0.14 3.1E-06 52.4 5.1 64 198-265 38-101 (323)
460 TIGR00041 DTMP_kinase thymidyl 93.0 0.41 8.9E-06 47.4 8.5 23 216-238 4-26 (195)
461 cd02020 CMPK Cytidine monophos 93.0 0.062 1.3E-06 50.5 2.4 21 217-237 1-21 (147)
462 COG3640 CooC CO dehydrogenase 93.0 0.17 3.6E-06 50.0 5.3 42 217-260 2-44 (255)
463 PF13245 AAA_19: Part of AAA d 93.0 0.17 3.7E-06 41.2 4.6 22 216-237 11-32 (76)
464 PRK08149 ATP synthase SpaL; Va 92.9 0.41 9E-06 52.9 8.9 85 215-303 151-250 (428)
465 PRK13765 ATP-dependent proteas 92.9 0.14 3.1E-06 59.8 5.6 75 188-272 31-105 (637)
466 PRK14530 adenylate kinase; Pro 92.9 0.069 1.5E-06 54.0 2.7 22 216-237 4-25 (215)
467 PRK13947 shikimate kinase; Pro 92.9 0.066 1.4E-06 51.9 2.4 21 217-237 3-23 (171)
468 KOG3864 Uncharacterized conser 92.8 0.013 2.9E-07 56.1 -2.4 61 808-873 124-187 (221)
469 PRK08927 fliI flagellum-specif 92.8 0.46 9.9E-06 52.7 9.0 85 215-303 158-257 (442)
470 PRK03846 adenylylsulfate kinas 92.8 0.092 2E-06 52.2 3.4 24 214-237 23-46 (198)
471 cd01129 PulE-GspE PulE/GspE Th 92.8 0.27 5.8E-06 51.3 6.9 81 216-306 81-161 (264)
472 COG4181 Predicted ABC-type tra 92.8 1.6 3.4E-05 41.1 10.9 125 216-341 37-214 (228)
473 PRK10078 ribose 1,5-bisphospho 92.7 0.082 1.8E-06 52.0 2.9 23 216-238 3-25 (186)
474 PRK00300 gmk guanylate kinase; 92.7 0.084 1.8E-06 52.9 3.1 24 215-238 5-28 (205)
475 PF03193 DUF258: Protein of un 92.7 0.15 3.3E-06 48.1 4.4 35 195-238 24-58 (161)
476 PRK12339 2-phosphoglycerate ki 92.7 0.095 2.1E-06 51.8 3.3 24 215-238 3-26 (197)
477 cd00820 PEPCK_HprK Phosphoenol 92.7 0.098 2.1E-06 45.5 2.9 22 215-236 15-36 (107)
478 PRK09519 recA DNA recombinatio 92.7 0.43 9.3E-06 56.7 9.0 84 214-304 59-148 (790)
479 cd03287 ABC_MSH3_euk MutS3 hom 92.7 0.56 1.2E-05 47.3 8.8 118 215-340 31-160 (222)
480 PRK09099 type III secretion sy 92.6 0.41 8.8E-06 53.2 8.4 85 215-303 163-262 (441)
481 PRK14737 gmk guanylate kinase; 92.6 0.1 2.2E-06 51.2 3.4 25 214-238 3-27 (186)
482 TIGR00176 mobB molybdopterin-g 92.6 0.12 2.5E-06 49.0 3.6 22 217-238 1-22 (155)
483 PRK06936 type III secretion sy 92.6 0.47 1E-05 52.5 8.7 85 215-303 162-261 (439)
484 PF01078 Mg_chelatase: Magnesi 92.6 0.16 3.4E-06 49.9 4.5 42 188-237 3-44 (206)
485 cd01132 F1_ATPase_alpha F1 ATP 92.6 0.23 5E-06 51.2 5.9 85 215-303 69-170 (274)
486 PF03266 NTPase_1: NTPase; In 92.6 0.08 1.7E-06 50.9 2.5 21 218-238 2-22 (168)
487 cd00071 GMPK Guanosine monopho 92.5 0.08 1.7E-06 49.1 2.4 21 218-238 2-22 (137)
488 PRK12678 transcription termina 92.5 0.2 4.3E-06 56.5 5.7 96 199-303 405-512 (672)
489 TIGR02788 VirB11 P-type DNA tr 92.5 0.23 5.1E-06 53.1 6.3 112 216-338 145-257 (308)
490 PF02374 ArsA_ATPase: Anion-tr 92.5 0.18 3.8E-06 53.8 5.3 45 216-262 2-46 (305)
491 TIGR00764 lon_rel lon-related 92.5 0.25 5.5E-06 57.8 7.0 75 188-272 18-92 (608)
492 CHL00060 atpB ATP synthase CF1 92.5 0.44 9.5E-06 53.3 8.4 88 215-303 161-271 (494)
493 cd01672 TMPK Thymidine monopho 92.5 0.26 5.6E-06 49.0 6.3 22 217-238 2-23 (200)
494 PF10236 DAP3: Mitochondrial r 92.5 0.87 1.9E-05 48.7 10.5 49 345-394 258-306 (309)
495 TIGR01313 therm_gnt_kin carboh 92.4 0.073 1.6E-06 51.1 2.1 21 218-238 1-21 (163)
496 PRK11823 DNA repair protein Ra 92.4 0.72 1.6E-05 52.0 10.2 82 214-303 79-165 (446)
497 cd00464 SK Shikimate kinase (S 92.4 0.088 1.9E-06 49.9 2.6 20 218-237 2-21 (154)
498 PRK05922 type III secretion sy 92.4 0.76 1.6E-05 50.9 10.0 84 216-303 158-256 (434)
499 KOG0728 26S proteasome regulat 92.4 4.3 9.3E-05 40.4 13.9 154 189-364 147-331 (404)
500 COG1100 GTPase SAR1 and relate 92.4 0.3 6.5E-06 49.4 6.6 24 216-239 6-29 (219)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-87 Score=783.90 Aligned_cols=755 Identities=30% Similarity=0.446 Sum_probs=569.0
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhCCCCCC
Q 047584 24 GIRLFARQGRIQADLVKWKNKLVTIKAVLDDAEEKKTTNDAVKLWLGELQNLVYDVEDLLDEFQTEAFRRKLLLGNGEPA 103 (883)
Q Consensus 24 ~~~~~~~~~~v~~~~~~L~~~L~~i~~~L~~a~~~~~~~~~~~~wl~~lrd~ayd~eD~lD~~~~~~~~~~~~~~~~~~~ 103 (883)
+..++....++++.+..|++.|..++.+++||+.++.....+..|...+++++|++||.++.|.......+..+..
T Consensus 16 l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l---- 91 (889)
T KOG4658|consen 16 LNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLL---- 91 (889)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh----
Confidence 3345555678888999999999999999999999988888899999999999999999999999887665433200
Q ss_pred ccCCCCCCcccccccccccccccccccCCCCchhhhHHHHHHHHHHHHHHHHHHhccccccccccCC--CCCcccccCCC
Q 047584 104 AAHDQPSSSRTSTKSKFRKLIPTCCTTLTPRSIQFDYAMMSKIKKINDRFQDIEEGILPLNLIKSSA--GGSKKARQRRD 181 (883)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~ 181 (883)
. ......+... + ..+.+..+..+..+.+++..+.+....++...... +.....++..+
T Consensus 92 ----~-------~~~~~~~~~c-~--------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e 151 (889)
T KOG4658|consen 92 ----S-------TRSVERQRLC-L--------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVE 151 (889)
T ss_pred ----h-------hhHHHHHHHh-h--------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcc
Confidence 0 0001111110 0 02334444455555555555554444443222111 11011222333
Q ss_pred cCCCcc-cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchh-hhccCCeEEEEEeCCCCCH
Q 047584 182 TTSLVE-AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKR-VQDHFDLKAWTCVSEDFDV 259 (883)
Q Consensus 182 ~~~~~~-~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~ 259 (883)
+.+..+ .. ||.+..++++.+.|..++ ..+++|+||||+||||||++++|+.. ++.+||.++||+||+.++.
T Consensus 152 ~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~ 224 (889)
T KOG4658|consen 152 TRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTT 224 (889)
T ss_pred cCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccH
Confidence 443333 34 999999999999998764 28999999999999999999999987 9999999999999999999
Q ss_pred HHHHHHHHHHhccCCC--CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHH
Q 047584 260 KGLTRTILSSITKQTV--DNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVA 337 (883)
Q Consensus 260 ~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va 337 (883)
..++.+|++.++.... ...+.++++..|.+.|++|||+|||||||+. .+|+.+..++|...+||||++|||++.|+
T Consensus 225 ~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~ 302 (889)
T KOG4658|consen 225 RKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVC 302 (889)
T ss_pred HhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhh
Confidence 9999999999876443 2334578899999999999999999999998 77999999999999999999999999999
Q ss_pred Hh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCCChHHHHHHHhc
Q 047584 338 KI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREWKGVLSS 416 (883)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~ 416 (883)
.. +++...+++++|+++|||.||.+.+|.... ..++.++++|++|+++|+|+|||++++|+.|+.+++..+|+++.+.
T Consensus 303 ~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~ 381 (889)
T KOG4658|consen 303 GRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNV 381 (889)
T ss_pred hccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcc
Confidence 98 777889999999999999999999987643 2344599999999999999999999999999999999999999988
Q ss_pred ccccCC----CCCCCchhHHHHhhcCCChhHHHHhhHhccCCCCceeCHHHHHHHHHhCCCCcCCCCCCChHHHHHHHHH
Q 047584 417 KIWELP----EDRCPIIPALAVSYYYLPPILKQCFAYCSLFPKDYEFDEEEIILLWCASGFLDHKESGNPNEDLGRKFFQ 492 (883)
Q Consensus 417 ~~~~~~----~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~ 492 (883)
..+... ...+.+.++|.+||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+...+.+.+++|..|+.
T Consensus 382 l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~ 461 (889)
T KOG4658|consen 382 LKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIE 461 (889)
T ss_pred ccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHH
Confidence 766533 2345789999999999999999999999999999999999999999999999987778899999999999
Q ss_pred HHHhcCcccccC--CCCCcEEecchHHHHHHHHhc-----CCceEEeec-ccccccccccCCCeeEEEeEecCCcccccc
Q 047584 493 ELRSRSFFQQSA--TDASRFVMHDLINDLARWAAG-----GETYFTLEY-TSEVNKRQCFSRNLRHLSYIRGDYDGVQRF 564 (883)
Q Consensus 493 ~L~~~sllq~~~--~~~~~~~~Hdlv~~~a~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~ 564 (883)
+|++++|++... +....|+|||+|||+|.++|+ .+.++.... .............+|++++..+... ..
T Consensus 462 ~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~---~~ 538 (889)
T KOG4658|consen 462 ELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIE---HI 538 (889)
T ss_pred HHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchh---hc
Confidence 999999999876 355789999999999999996 344332221 1111112223467899999876543 23
Q ss_pred ccccCCCCceEeeeccccCCCCCCCCCCchhhhc-CCCceeEEeeCCCC-CCCcCccccCCCcccEEeccCCCccccccc
Q 047584 565 GDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLL-KLQRLRVFSLRGYC-IPELPDSVGDLRYLRYLNLSGTVIRSLPES 642 (883)
Q Consensus 565 ~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~-~l~~Lr~L~L~~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~ 642 (883)
.....+++|+||.+..+.. ....+...++ .+++||+|||++|. +.++|+.|+.|.|||||+|++|.|+.+|.+
T Consensus 539 ~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~ 613 (889)
T KOG4658|consen 539 AGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG 613 (889)
T ss_pred cCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH
Confidence 3445666899999887642 1233444445 79999999999876 789999999999999999999999999999
Q ss_pred cccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccC
Q 047584 643 VNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHL 722 (883)
Q Consensus 643 i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L 722 (883)
+.+|+.|++||+..+..+..+|..+..|++||+|.+.... ...-...++.+.+|++|..+.+...+...+..+..++.|
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L 692 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRL 692 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHH
Confidence 9999999999999977777777777779999999987654 222222456667777776666654443233444444444
Q ss_pred C---CeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCC---CCCCcceEEEEecCC
Q 047584 723 E---RTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLK---PHANLEQFCIKGYGG 796 (883)
Q Consensus 723 ~---~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~L~~L~l~~~~~ 796 (883)
+ ..+.+.. .......+.+..+.+|+.|.+..|...+.. ........ .++++..+.+.++..
T Consensus 693 ~~~~~~l~~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~--------~~~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 693 RSLLQSLSIEG-----CSKRTLISSLGSLGNLEELSILDCGISEIV--------IEWEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred HHHhHhhhhcc-----cccceeecccccccCcceEEEEcCCCchhh--------cccccccchhhhHHHHHHHHhhcccc
Confidence 4 1122211 222334566788999999999886432110 00111111 134667777777777
Q ss_pred CCCCcCCCcCCCCCeeEEEEecCCCCCC-CCCCCCcCcccc
Q 047584 797 MKFPTWLGDSLFSNLVTLKFENCGICTA-LPSVGQLPSLKH 836 (883)
Q Consensus 797 ~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~lp~L~~ 836 (883)
...+.|... .++|+.|++..|....+ +|....+..++.
T Consensus 760 ~r~l~~~~f--~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 760 LRDLTWLLF--APHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred ccccchhhc--cCcccEEEEecccccccCCCHHHHhhhccc
Confidence 778888754 68999999999987665 444444444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.6e-59 Score=579.92 Aligned_cols=478 Identities=22% Similarity=0.316 Sum_probs=348.0
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEe---CCC--------
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCV---SED-------- 256 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~-------- 256 (883)
..+|||+..++++..+|.-. ...+++|+|+||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred ccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccc
Confidence 67999999999999988533 23589999999999999999999998 67889998888742 111
Q ss_pred ---CC-HHHHHHHHHHHhccCCC-CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeC
Q 047584 257 ---FD-VKGLTRTILSSITKQTV-DNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTT 331 (883)
Q Consensus 257 ---~~-~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT 331 (883)
++ ...+..+++.++..... .... ...+++.++++|+||||||||+. ..|+.+.......++||+|||||
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTT 331 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVIT 331 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEe
Confidence 01 12344555555433221 1111 14577889999999999999876 77888876666667899999999
Q ss_pred CChhHHHhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCCChHHHH
Q 047584 332 RNEEVAKIMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREWK 411 (883)
Q Consensus 332 R~~~va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~ 411 (883)
|+..++..++..+.|+++.|++++||+||+++||+.. .+++.+.+++++|+++|+|+|||++++|++|++++ ..+|+
T Consensus 332 rd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~-~~~W~ 408 (1153)
T PLN03210 332 KDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRD-KEDWM 408 (1153)
T ss_pred CcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCC-HHHHH
Confidence 9999998777778999999999999999999999764 23456889999999999999999999999999875 78999
Q ss_pred HHHhcccccCCCCCCCchhHHHHhhcCCCh-hHHHHhhHhccCCCCceeCHHHHHHHHHhCCCCcCCCCCCChHHHHHHH
Q 047584 412 GVLSSKIWELPEDRCPIIPALAVSYYYLPP-ILKQCFAYCSLFPKDYEFDEEEIILLWCASGFLDHKESGNPNEDLGRKF 490 (883)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~ 490 (883)
.++.+...... ..+..+|++||+.|++ ..|.||+++|+||.++.++ .+..|++.+.... +.-
T Consensus 409 ~~l~~L~~~~~---~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~ 471 (1153)
T PLN03210 409 DMLPRLRNGLD---GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIG 471 (1153)
T ss_pred HHHHHHHhCcc---HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhC
Confidence 99988655432 3699999999999987 5999999999999987554 4677888765432 122
Q ss_pred HHHHHhcCcccccCCCCCcEEecchHHHHHHHHhcCCc-------eEEeeccc-ccccccccCCCeeEEEeEecCCcccc
Q 047584 491 FQELRSRSFFQQSATDASRFVMHDLINDLARWAAGGET-------YFTLEYTS-EVNKRQCFSRNLRHLSYIRGDYDGVQ 562 (883)
Q Consensus 491 l~~L~~~sllq~~~~~~~~~~~Hdlv~~~a~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~r~l~~~~~~~~~~~ 562 (883)
++.|+++||++... .++.|||++|++|++++..+. +.....+. ..-.......+++++++.........
T Consensus 472 l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~ 548 (1153)
T PLN03210 472 LKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELH 548 (1153)
T ss_pred hHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceee
Confidence 88999999998754 379999999999999984331 11100000 00001111245566655432221110
Q ss_pred -ccccccCCCCceEeeeccccCC-----------CC------------CCCCCCchhhhcCCCceeEEeeCCCCCCCcCc
Q 047584 563 -RFGDLYDIQHLRTFLPVMLTNS-----------GP------------CYLAPSILPKLLKLQRLRVFSLRGYCIPELPD 618 (883)
Q Consensus 563 -~~~~~~~~~~lrsl~~~~~~~~-----------~~------------~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~ 618 (883)
....+..+++|+.|.+...... ++ ...+...++.-+.+.+|+.|++++|.+..+|.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccc
Confidence 1123455667776655332100 00 00111122222356788888888888888888
Q ss_pred cccCCCcccEEeccCC-CccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCC
Q 047584 619 SVGDLRYLRYLNLSGT-VIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCL 697 (883)
Q Consensus 619 ~i~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L 697 (883)
.+..+++|++|+|+++ .++.+| .++.+++|++|++++|..+..+|..+.++++|++|++++|..+..+|..+ ++++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 8888889999999876 456676 47888899999999988888899889999999999999888788888766 67777
Q ss_pred CccCc
Q 047584 698 QTLCN 702 (883)
Q Consensus 698 ~~L~~ 702 (883)
+.|..
T Consensus 707 ~~L~L 711 (1153)
T PLN03210 707 YRLNL 711 (1153)
T ss_pred CEEeC
Confidence 77744
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.2e-44 Score=381.40 Aligned_cols=278 Identities=38% Similarity=0.630 Sum_probs=226.4
Q ss_pred chhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhcc
Q 047584 193 RETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITK 272 (883)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 272 (883)
||.++++|.++|.... ...++|+|+||||+||||||++++++..++.+|+.++||.++...+...++..|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 367999999999999999999999987799999999999999999999999999999987
Q ss_pred CCC---CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHHHhcCC-CccEeC
Q 047584 273 QTV---DNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAKIMSL-DQAYEL 348 (883)
Q Consensus 273 ~~~---~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~~-~~~~~l 348 (883)
... ...+.+.+...+.+.|.++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 633 4567888999999999999999999999987 6888888888877789999999999988876543 578999
Q ss_pred CCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCCChHHHHHHHhcccccCCC---CC
Q 047584 349 KSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREWKGVLSSKIWELPE---DR 425 (883)
Q Consensus 349 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~---~~ 425 (883)
++|+.++|++||.+.++... ...++.+++.+++|+++|+|+||||+++|++|+.+.+..+|...+++....... ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 223455577899999999999999999999997766678899988765554432 23
Q ss_pred CCchhHHHHhhcCCChhHHHHhhHhccCCCCceeCHHHHHHHHHhCCCCcCC
Q 047584 426 CPIIPALAVSYYYLPPILKQCFAYCSLFPKDYEFDEEEIILLWCASGFLDHK 477 (883)
Q Consensus 426 ~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~ 477 (883)
..+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|++||||...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 5789999999999999999999999999999999999999999999999763
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=3.6e-22 Score=212.01 Aligned_cols=304 Identities=20% Similarity=0.241 Sum_probs=194.5
Q ss_pred CCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCCc
Q 047584 546 RNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRY 625 (883)
Q Consensus 546 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~ 625 (883)
.++.||++..+... .....+..++.||++++..+.- -...+|++++++.-|.+|||++|.+.+.|..+..-++
T Consensus 55 qkLEHLs~~HN~L~--~vhGELs~Lp~LRsv~~R~N~L-----KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn 127 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLI--SVHGELSDLPRLRSVIVRDNNL-----KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKN 127 (1255)
T ss_pred hhhhhhhhhhhhhH--hhhhhhccchhhHHHhhhcccc-----ccCCCCchhcccccceeeecchhhhhhcchhhhhhcC
Confidence 46778887655432 2245677889999999877653 2345788899999999999999999999999999999
Q ss_pred ccEEeccCCCccccccccc-cCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccC-ccCCCCCCCCccCce
Q 047584 626 LRYLNLSGTVIRSLPESVN-KLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMP-LGIVRLTCLQTLCNF 703 (883)
Q Consensus 626 L~~L~L~~~~i~~lp~~i~-~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~ 703 (883)
+-.|+||+|+|..+|..+. +|..|-+|||++ |.+..+|+.+..|.+|+.|.|++|. +..+. ..+-.|++|++|..-
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcc
Confidence 9999999999999998765 899999999999 7899999999999999999999997 43321 223345666666433
Q ss_pred EeCcCCCCCcccccccccCCCeeEE--eccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcch----------h
Q 047584 704 VVAKDSGSGLRELKSLTHLERTLKI--SKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREA----------E 771 (883)
Q Consensus 704 ~~~~~~~~~~~~l~~L~~L~~~L~i--~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----------~ 771 (883)
.....-......+..|.+|+ .+.+ +++.. .+..+-++.+|+.|+|+.|........... .
T Consensus 206 ~TqRTl~N~Ptsld~l~NL~-dvDlS~N~Lp~-------vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 206 NTQRTLDNIPTSLDDLHNLR-DVDLSENNLPI-------VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSR 277 (1255)
T ss_pred cccchhhcCCCchhhhhhhh-hccccccCCCc-------chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcccc
Confidence 32222122233344444444 3333 33322 456677788899999987532211100000 0
Q ss_pred hHHh-hhcCCCCCCCcceEEEEecCCC--CCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCccccee
Q 047584 772 TEMG-VLDVLKPHANLEQFCIKGYGGM--KFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMSSVRR 847 (883)
Q Consensus 772 ~~~~-~l~~l~~~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~ 847 (883)
+... ....+..++.|+.|.+.+|... .+|+.++. +.+|+.+...+|. +.-+| .+..++.|+.|.|+.| .+-.
T Consensus 278 NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK--L~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~N-rLiT 353 (1255)
T KOG0444|consen 278 NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK--LIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHN-RLIT 353 (1255)
T ss_pred chhccchHHHhhhHHHHHHHhccCcccccCCccchhh--hhhhHHHHhhccc-cccCchhhhhhHHHHHhccccc-ceee
Confidence 0000 1112233445555555554422 45555543 5555555555542 33333 5555666666666543 4445
Q ss_pred cCCCccCCCCCCCCCCcceeecccccccc
Q 047584 848 LDPEFYGKDASIPFPYLETLRFEDMEEWE 876 (883)
Q Consensus 848 i~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 876 (883)
+|..+. .+|.|+.|++.+.|+|.
T Consensus 354 LPeaIH------lL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 354 LPEAIH------LLPDLKVLDLRENPNLV 376 (1255)
T ss_pred chhhhh------hcCCcceeeccCCcCcc
Confidence 554433 48899999999988873
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=9e-20 Score=228.14 Aligned_cols=248 Identities=19% Similarity=0.250 Sum_probs=134.3
Q ss_pred CCceeEEeeCCCCCC-CcCccccCCCcccEEeccCCCcc-ccccccccCCCccEEecCCCCchhhchhhhcCcCCCCcee
Q 047584 600 LQRLRVFSLRGYCIP-ELPDSVGDLRYLRYLNLSGTVIR-SLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLK 677 (883)
Q Consensus 600 l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~ 677 (883)
+++|++|+|++|.+. .+|..++++.+|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 444455555554443 34445555555555555555543 4455555555555555555444444555555555555555
Q ss_pred cCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEE
Q 047584 678 NSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLN 757 (883)
Q Consensus 678 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 757 (883)
+++|.....+|..++++++|++|.... +...+.....+.++++|+ .|.+.+.. .....+..+.++++|+.|+++
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVY-NNLTGPIPSSLGNLKNLQ-YLFLYQNK----LSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcC-ceeccccChhHhCCCCCC-EEECcCCe----eeccCchhHhhccCcCEEECc
Confidence 555543334555555555555552211 111122233444445554 44443221 111233344555666666665
Q ss_pred eccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCC-CCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCccc
Q 047584 758 WTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGM-KFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLK 835 (883)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~ 835 (883)
+|... ......+..+++|+.|++++|... .+|.++.. +++|+.|+|++|.....+| .++.+++|+
T Consensus 293 ~n~l~-----------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 359 (968)
T PLN00113 293 DNSLS-----------GEIPELVIQLQNLEILHLFSNNFTGKIPVALTS--LPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359 (968)
T ss_pred CCeec-----------cCCChhHcCCCCCcEEECCCCccCCcCChhHhc--CCCCCEEECcCCCCcCcCChHHhCCCCCc
Confidence 53111 112233445677888888777655 45666643 7888888888887666666 677788888
Q ss_pred ceeccCcccceecCCCccCCCCCCCCCCcceeecccc
Q 047584 836 HLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 836 ~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
.|++++|.....+|..+.. +++|+.|++.++
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~------~~~L~~L~l~~n 390 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCS------SGNLFKLILFSN 390 (968)
T ss_pred EEECCCCeeEeeCChhHhC------cCCCCEEECcCC
Confidence 8888877554556655544 678888877654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=1.5e-19 Score=226.20 Aligned_cols=294 Identities=20% Similarity=0.242 Sum_probs=209.5
Q ss_pred CCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCC-CcCccccCCC
Q 047584 546 RNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIP-ELPDSVGDLR 624 (883)
Q Consensus 546 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~-~lp~~i~~l~ 624 (883)
..+|+|.+..+..... .....+++|++|.+..+. +....+..+.++++|++|+|++|.+. .+|..+++++
T Consensus 118 ~~L~~L~Ls~n~l~~~---~p~~~l~~L~~L~Ls~n~------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 188 (968)
T PLN00113 118 SSLRYLNLSNNNFTGS---IPRGSIPNLETLDLSNNM------LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188 (968)
T ss_pred CCCCEEECcCCccccc---cCccccCCCCEEECcCCc------ccccCChHHhcCCCCCEEECccCcccccCChhhhhCc
Confidence 4566666554433211 112346667777654433 34455666778899999999999875 5788889999
Q ss_pred cccEEeccCCCcc-ccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCce
Q 047584 625 YLRYLNLSGTVIR-SLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNF 703 (883)
Q Consensus 625 ~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 703 (883)
+|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|...
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 9999999998887 578889999999999999876666788889999999999999887445778888888888888432
Q ss_pred EeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCC
Q 047584 704 VVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPH 783 (883)
Q Consensus 704 ~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~ 783 (883)
. +...+.....+.++++|+ .|.+.+.. .....+..+.++++|+.|+++.|... ......+..+
T Consensus 269 ~-n~l~~~~p~~l~~l~~L~-~L~Ls~n~----l~~~~p~~~~~l~~L~~L~l~~n~~~-----------~~~~~~~~~l 331 (968)
T PLN00113 269 Q-NKLSGPIPPSIFSLQKLI-SLDLSDNS----LSGEIPELVIQLQNLEILHLFSNNFT-----------GKIPVALTSL 331 (968)
T ss_pred C-CeeeccCchhHhhccCcC-EEECcCCe----eccCCChhHcCCCCCcEEECCCCccC-----------CcCChhHhcC
Confidence 2 222233445566777777 67665432 22234556778889999998774221 1123345567
Q ss_pred CCcceEEEEecCCC-CCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCcccceecCCCccCCCCCCCC
Q 047584 784 ANLEQFCIKGYGGM-KFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPF 861 (883)
Q Consensus 784 ~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~ 861 (883)
++|+.|++++|... .+|.++.. +++|+.|+|++|.....+| .+..+++|+.|++++|.....+|..+.. +
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~--~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~------~ 403 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGK--HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA------C 403 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhC--CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC------C
Confidence 88999999988876 57777754 7899999999987766666 6777889999999888655556654433 8
Q ss_pred CCcceeeccccc
Q 047584 862 PYLETLRFEDME 873 (883)
Q Consensus 862 p~L~~L~l~~~~ 873 (883)
++|+.|++.+|.
T Consensus 404 ~~L~~L~L~~n~ 415 (968)
T PLN00113 404 RSLRRVRLQDNS 415 (968)
T ss_pred CCCCEEECcCCE
Confidence 899999888764
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=3.5e-20 Score=197.08 Aligned_cols=271 Identities=24% Similarity=0.283 Sum_probs=194.5
Q ss_pred cccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCC--CcCccccCCCcccEEeccCCCcccccccc
Q 047584 566 DLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIP--ELPDSVGDLRYLRYLNLSGTVIRSLPESV 643 (883)
Q Consensus 566 ~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~i 643 (883)
.+..+.+|..|.+..++- .++...+..++.||.+++..|++. .+|..|.+|..|..||||+|.+++.|..+
T Consensus 50 EL~~lqkLEHLs~~HN~L-------~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L 122 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAHNQL-------ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL 122 (1255)
T ss_pred HHHHHhhhhhhhhhhhhh-------HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh
Confidence 445555666555444331 233344557899999999999874 68999999999999999999999999999
Q ss_pred ccCCCccEEecCCCCchhhchhh-hcCcCCCCceecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccC
Q 047584 644 NKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHL 722 (883)
Q Consensus 644 ~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L 722 (883)
..-+++-+|+|++ |++..+|.. +.+|+.|-+|+||+|. +..+|+.+..|..||+|.. +.+......+..|..|+.|
T Consensus 123 E~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~L-s~NPL~hfQLrQLPsmtsL 199 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKL-SNNPLNHFQLRQLPSMTSL 199 (1255)
T ss_pred hhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhc-CCChhhHHHHhcCccchhh
Confidence 9999999999999 678999975 6799999999999998 9999999999999999943 2222334445556666655
Q ss_pred CCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCC------------------
Q 047584 723 ERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHA------------------ 784 (883)
Q Consensus 723 ~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~------------------ 784 (883)
. .|.++ +.......++.++..+.||..++++.|.... +.+.+-.++
T Consensus 200 ~-vLhms---~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~------------vPecly~l~~LrrLNLS~N~iteL~~~ 263 (1255)
T KOG0444|consen 200 S-VLHMS---NTQRTLDNIPTSLDDLHNLRDVDLSENNLPI------------VPECLYKLRNLRRLNLSGNKITELNMT 263 (1255)
T ss_pred h-hhhcc---cccchhhcCCCchhhhhhhhhccccccCCCc------------chHHHhhhhhhheeccCcCceeeeecc
Confidence 5 45444 4444455678888999999999998753221 122222233
Q ss_pred -----CcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCC-CCCCC-CCCCcCcccceeccCcccceecCCCccCCCC
Q 047584 785 -----NLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGI-CTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDA 857 (883)
Q Consensus 785 -----~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~-~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~ 857 (883)
+|++|+++.|..+.+|..+.. ++.|++|.+.+|+. ...+| .+|.|.+|+++..++| +++-+|..++.
T Consensus 264 ~~~W~~lEtLNlSrNQLt~LP~avcK--L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcR--- 337 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQLTVLPDAVCK--LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCR--- 337 (1255)
T ss_pred HHHHhhhhhhccccchhccchHHHhh--hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhh---
Confidence 455555566665556665543 67777777777654 23355 6777777777777654 67777776665
Q ss_pred CCCCCCcceeeccc
Q 047584 858 SIPFPYLETLRFED 871 (883)
Q Consensus 858 ~~~~p~L~~L~l~~ 871 (883)
+++|+.|.|+.
T Consensus 338 ---C~kL~kL~L~~ 348 (1255)
T KOG0444|consen 338 ---CVKLQKLKLDH 348 (1255)
T ss_pred ---hHHHHHhcccc
Confidence 78888887765
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=4.2e-16 Score=195.21 Aligned_cols=95 Identities=29% Similarity=0.395 Sum_probs=81.9
Q ss_pred hhhhcCCCceeEEeeCCCC-CCCcCccccCCCcccEEeccCC-CccccccccccCCCccEEecCCCCchhhchhhhcCcC
Q 047584 594 LPKLLKLQRLRVFSLRGYC-IPELPDSVGDLRYLRYLNLSGT-VIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLI 671 (883)
Q Consensus 594 ~~~l~~l~~Lr~L~L~~~~-~~~lp~~i~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~ 671 (883)
+..+..+++|++|+|+++. +..+| .++.+++|++|+|++| .+..+|..++++++|++|++++|+.+..+|..+ +++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 3445579999999999876 66777 4889999999999986 577999999999999999999999999999876 799
Q ss_pred CCCceecCCCCCccccCcc
Q 047584 672 KLHHLKNSNTDSLEEMPLG 690 (883)
Q Consensus 672 ~L~~L~l~~~~~~~~~p~~ 690 (883)
+|++|++++|..+..+|..
T Consensus 705 sL~~L~Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI 723 (1153)
T ss_pred CCCEEeCCCCCCccccccc
Confidence 9999999999877776643
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=1.7e-17 Score=176.04 Aligned_cols=250 Identities=22% Similarity=0.292 Sum_probs=156.4
Q ss_pred hhhcCCCceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCccccc-cccccCCCccEEecCCCCchhhchh-hhcCcC
Q 047584 595 PKLLKLQRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLI 671 (883)
Q Consensus 595 ~~l~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~-~i~~L~ 671 (883)
..+.-++.||+|||+.|.|+++|. ++..-.++++|+|++|.|+.+- ..|..|.+|-+|.|++ |.+..+|. .|.+|+
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLP 221 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcc
Confidence 344567889999999999988864 4566678999999999999874 5678888999999998 67888885 467799
Q ss_pred CCCceecCCCCCcccc-CccCCCCCCCCccCceE--eCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCC
Q 047584 672 KLHHLKNSNTDSLEEM-PLGIVRLTCLQTLCNFV--VAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGK 748 (883)
Q Consensus 672 ~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~--~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~ 748 (883)
+|+.|+|..|. +..+ -..|..|.+|+.|+.-. +.+...-.+-.+.++..|. |..+.+..++ ..++-++
T Consensus 222 ~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~--L~~N~l~~vn------~g~lfgL 292 (873)
T KOG4194|consen 222 KLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN--LETNRLQAVN------EGWLFGL 292 (873)
T ss_pred hhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee--cccchhhhhh------ccccccc
Confidence 99999999887 4433 23467777887774322 2233333344455555552 4444443332 2346677
Q ss_pred CCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCc-----------------------
Q 047584 749 KNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGD----------------------- 805 (883)
Q Consensus 749 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~----------------------- 805 (883)
+.|+.|++++|. ......+++..+++|+.|+|+.|.+.++++.-..
T Consensus 293 t~L~~L~lS~Na-----------I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 293 TSLEQLDLSYNA-----------IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred chhhhhccchhh-----------hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence 778888887642 1222345566667777777777777766542110
Q ss_pred CCCCCeeEEEEecCCCCCCCC----CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccc
Q 047584 806 SLFSNLVTLKFENCGICTALP----SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFED 871 (883)
Q Consensus 806 ~~l~~L~~L~L~~~~~~~~l~----~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~ 871 (883)
..+++|++|+|++|.....+. .+..||+|+.|.+.+| +++.|+..-+. +|++|+.|+|.+
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfs-----gl~~LE~LdL~~ 425 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFS-----GLEALEHLDLGD 425 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhc-----cCcccceecCCC
Confidence 013555555555554321111 3444666666666555 55555543222 366666666655
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.57 E-value=1.3e-17 Score=169.52 Aligned_cols=234 Identities=24% Similarity=0.288 Sum_probs=103.4
Q ss_pred hcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCce
Q 047584 597 LLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHL 676 (883)
Q Consensus 597 l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L 676 (883)
+.++..|.+|++++|.+..+|..|+.+..++.|+.+.|++.++|+.++.+.+|..|+.+. +.+.++|.+++.+..|..|
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDL 142 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhh
Confidence 334555555555555555555555555555555555555555555555555555555555 3444555555555555555
Q ss_pred ecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEE
Q 047584 677 KNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSL 756 (883)
Q Consensus 677 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 756 (883)
+..+|+ +.++|.+++.+.+|..|..-.. +.. ......-+++.|+ .+..+ .+.-+.++..++.+.+|..|++
T Consensus 143 ~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~-~l~~~~i~m~~L~-~ld~~-----~N~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 143 DATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLK-ALPENHIAMKRLK-HLDCN-----SNLLETLPPELGGLESLELLYL 213 (565)
T ss_pred hccccc-cccCchHHHHHHHHHHhhcccc-chh-hCCHHHHHHHHHH-hcccc-----hhhhhcCChhhcchhhhHHHHh
Confidence 554444 4555555554444444411110 000 0011111122222 11111 1122223444455555555555
Q ss_pred EeccCCCCCCC-----------cchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCC
Q 047584 757 NWTCSTDGSSS-----------REAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTAL 825 (883)
Q Consensus 757 ~~~~~~~~~~~-----------~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l 825 (883)
..|.....+.. ..+..+.-.-+.+..+++|..|++..|...++|..+.- +.+|.+|++++|....-.
T Consensus 214 ~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 214 RRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDISSLP 291 (565)
T ss_pred hhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCccccCC
Confidence 44211100000 00011111112233445566666666666666655532 555666666665433222
Q ss_pred CCCCCcCcccceeccCcc
Q 047584 826 PSVGQLPSLKHLVVCGMS 843 (883)
Q Consensus 826 ~~l~~lp~L~~L~L~~~~ 843 (883)
+.+|++ .|+.|.+.+|+
T Consensus 292 ~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccccc-eeeehhhcCCc
Confidence 356666 66666666553
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.55 E-value=2.2e-16 Score=160.73 Aligned_cols=106 Identities=29% Similarity=0.381 Sum_probs=63.3
Q ss_pred CCchhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccc-cCCCccEEecCCCCchhhchhhhcC
Q 047584 591 PSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVN-KLYNLHSLLLEDCDRLKKLCADMGN 669 (883)
Q Consensus 591 ~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~l~~c~~l~~lp~~i~~ 669 (883)
..+|+.++.+..|..|+|..|.+..+| .|+.|..|..|.+..|.|+.+|..++ .|.+|.+||++. ++++++|.+++.
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~cl 273 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICL 273 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHH
Confidence 344555556666666666666666665 55566666666666666666665554 566666666666 456666666666
Q ss_pred cCCCCceecCCCCCccccCccCCCCCCCCcc
Q 047584 670 LIKLHHLKNSNTDSLEEMPLGIVRLTCLQTL 700 (883)
Q Consensus 670 L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 700 (883)
|.+|.+|++++|. +..+|..+|+| .|+.|
T Consensus 274 LrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 274 LRSLERLDLSNND-ISSLPYSLGNL-HLKFL 302 (565)
T ss_pred hhhhhhhcccCCc-cccCCcccccc-eeeeh
Confidence 6666666666555 56666666655 44443
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.53 E-value=2.8e-15 Score=159.46 Aligned_cols=242 Identities=23% Similarity=0.273 Sum_probs=139.5
Q ss_pred CCCceeEEeeCCCCCCCcC-ccccCCCcccEEeccCCCcccccc-ccccCCCccEEecCCCCchhhch-hhhcCcCCCCc
Q 047584 599 KLQRLRVFSLRGYCIPELP-DSVGDLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLKKLC-ADMGNLIKLHH 675 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp-~~i~~L~~L~~ 675 (883)
...||+.|+|.+|.|+++. +.+..++.||.|||+.|.|+++|. ++..=.++++|+|++ |.+..+- ..|..|.+|-.
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~t 201 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLT 201 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchhee
Confidence 3445666666666655542 344555566666666666665553 344445566666666 3444432 23555666666
Q ss_pred eecCCCCCccccCcc-CCCCCCCCccCceEe--CcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCC
Q 047584 676 LKNSNTDSLEEMPLG-IVRLTCLQTLCNFVV--AKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLK 752 (883)
Q Consensus 676 L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~--~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~ 752 (883)
|.|++|. ++.+|.. |.+|+.|+.|..... ....+..+..|..|.+|+ |.-+++.... ...|-.+.+++
T Consensus 202 lkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk--lqrN~I~kL~------DG~Fy~l~kme 272 (873)
T KOG4194|consen 202 LKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK--LQRNDISKLD------DGAFYGLEKME 272 (873)
T ss_pred eecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh--hhhcCccccc------Ccceeeecccc
Confidence 6666665 5555543 344666655532111 111122333333333332 2222222221 12355667778
Q ss_pred ceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCC--CcCCCcCCCCCeeEEEEecCCCCCCCC--CC
Q 047584 753 ELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKF--PTWLGDSLFSNLVTLKFENCGICTALP--SV 828 (883)
Q Consensus 753 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~--p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l 828 (883)
.|+|..|... .-.-..+-.++.|+.|+++.|.+..+ ..|-. .++|+.|+|++|.. +.++ .+
T Consensus 273 ~l~L~~N~l~-----------~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf---tqkL~~LdLs~N~i-~~l~~~sf 337 (873)
T KOG4194|consen 273 HLNLETNRLQ-----------AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF---TQKLKELDLSSNRI-TRLDEGSF 337 (873)
T ss_pred eeecccchhh-----------hhhcccccccchhhhhccchhhhheeecchhhh---cccceeEecccccc-ccCChhHH
Confidence 8887663211 11223455678999999999988764 45654 68999999999854 4444 67
Q ss_pred CCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccc
Q 047584 829 GQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFED 871 (883)
Q Consensus 829 ~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~ 871 (883)
..|..|+.|.|++| .+..+...-+ .++.+|++|+|.+
T Consensus 338 ~~L~~Le~LnLs~N-si~~l~e~af-----~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 338 RVLSQLEELNLSHN-SIDHLAEGAF-----VGLSSLHKLDLRS 374 (873)
T ss_pred HHHHHhhhhccccc-chHHHHhhHH-----HHhhhhhhhcCcC
Confidence 78899999999988 6666654322 3588999999876
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.51 E-value=1.8e-12 Score=161.72 Aligned_cols=292 Identities=16% Similarity=0.206 Sum_probs=182.9
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCC-CCCHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSE-DFDVKGLTRTI 266 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i 266 (883)
..+|-|.. |.+.|... ...+++.|+|++|.||||++.++... ++.++|+++.. +.+...+...+
T Consensus 14 ~~~~~R~r----l~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRER----LLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchH----HHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 34555654 44444322 24689999999999999999998752 23689999964 44666677777
Q ss_pred HHHhccCCCC-------------CCChHHHHHHHHHHhC--CCcEEEEEeCCCCCChhhHhhhccccc-CCCCCcEEEEe
Q 047584 267 LSSITKQTVD-------------NNDLNFLQEELKKQLS--RKKFLLVLDDVWNENYTDWARLSLPFQ-AGAQGSKIVVT 330 (883)
Q Consensus 267 l~~l~~~~~~-------------~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilvT 330 (883)
+..+...... ..+...+...+...+. +.+++|||||+...+......+...+. ....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7776421111 1222333333333333 679999999998765444343333333 33456788899
Q ss_pred CCChh---HHHhcCCCccEeCC----CCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcC
Q 047584 331 TRNEE---VAKIMSLDQAYELK----SLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHG 403 (883)
Q Consensus 331 TR~~~---va~~~~~~~~~~l~----~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~ 403 (883)
||... ............+. +|+.+|+..+|........ -.+.+.+|.+.|+|.|+++..++..++.
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99842 12211122345555 9999999999987543211 1456788999999999999999877754
Q ss_pred CCChHHHHHHHhcccccCCC-CCCCchhHHHH-hhcCCChhHHHHhhHhccCCCCceeCHHHHHHHHHhCCCCcCCCCCC
Q 047584 404 KPYKREWKGVLSSKIWELPE-DRCPIIPALAV-SYYYLPPILKQCFAYCSLFPKDYEFDEEEIILLWCASGFLDHKESGN 481 (883)
Q Consensus 404 ~~~~~~w~~~~~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~ 481 (883)
.+.... ... +.+.. ....+...+.- .++.||++.+..+...|+++ .|+.+.+-.. ..
T Consensus 232 ~~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~------ 290 (903)
T PRK04841 232 NNSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TG------ 290 (903)
T ss_pred CCCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cC------
Confidence 432100 000 11111 11235554433 48999999999999999997 3443322211 11
Q ss_pred ChHHHHHHHHHHHHhcCcccc-cCCCCCcEEecchHHHHHHHHh
Q 047584 482 PNEDLGRKFFQELRSRSFFQQ-SATDASRFVMHDLINDLARWAA 524 (883)
Q Consensus 482 ~~e~~~~~~l~~L~~~sllq~-~~~~~~~~~~Hdlv~~~a~~~~ 524 (883)
.+.+...+++|.+.+++.. .+++...|+.|++++++++...
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1124677999999999753 3434457999999999998654
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=3.7e-15 Score=167.20 Aligned_cols=245 Identities=22% Similarity=0.266 Sum_probs=154.4
Q ss_pred CCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecC
Q 047584 600 LQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNS 679 (883)
Q Consensus 600 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~ 679 (883)
-.+|.+++++.+.+..+|++++.+.+|..|++.+|.++.+|..+....+|+.|.+.+ +.++.+|.....++.|++|+|.
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeeh
Confidence 356777777777777777777777777777777777777777777777777777776 4667777777777777777777
Q ss_pred CCCCccccCccCCCCC--CCCccCceEeCcCCCCCcccc--cccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceE
Q 047584 680 NTDSLEEMPLGIVRLT--CLQTLCNFVVAKDSGSGLREL--KSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELS 755 (883)
Q Consensus 680 ~~~~~~~~p~~i~~L~--~L~~L~~~~~~~~~~~~~~~l--~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 755 (883)
.|+ +..+|+.+-... +|..| +++.......... ..+..|+ .|. +.+ +...+.....+.++++|+.|+
T Consensus 319 ~N~-L~~lp~~~l~v~~~~l~~l---n~s~n~l~~lp~~~e~~~~~Lq-~Ly---lan-N~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 319 SNN-LPSLPDNFLAVLNASLNTL---NVSSNKLSTLPSYEENNHAALQ-ELY---LAN-NHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred hcc-ccccchHHHhhhhHHHHHH---hhhhccccccccccchhhHHHH-HHH---Hhc-Ccccccchhhhccccceeeee
Confidence 776 666665321110 12222 1111100000000 0011111 111 111 123344445577889999999
Q ss_pred EEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCccc
Q 047584 756 LNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLK 835 (883)
Q Consensus 756 l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~ 835 (883)
|++|.....+ -..+..++.|++|+|+||...++|..+.. ++.|++|...+| .+..+|.+.++|.|+
T Consensus 390 LsyNrL~~fp-----------as~~~kle~LeeL~LSGNkL~~Lp~tva~--~~~L~tL~ahsN-~l~~fPe~~~l~qL~ 455 (1081)
T KOG0618|consen 390 LSYNRLNSFP-----------ASKLRKLEELEELNLSGNKLTTLPDTVAN--LGRLHTLRAHSN-QLLSFPELAQLPQLK 455 (1081)
T ss_pred ecccccccCC-----------HHHHhchHHhHHHhcccchhhhhhHHHHh--hhhhHHHhhcCC-ceeechhhhhcCcce
Confidence 9886433211 11234557889999999999999987765 888999888777 455678888999999
Q ss_pred ceeccCcccceecCCCccCCCCCCCCCCcceeecccccc
Q 047584 836 HLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDMEE 874 (883)
Q Consensus 836 ~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~ 874 (883)
.+||+.| .++.+...+.. .-|+|++|++++.+.
T Consensus 456 ~lDlS~N-~L~~~~l~~~~-----p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 456 VLDLSCN-NLSEVTLPEAL-----PSPNLKYLDLSGNTR 488 (1081)
T ss_pred EEecccc-hhhhhhhhhhC-----CCcccceeeccCCcc
Confidence 9999855 66665443332 238999999998774
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=7.5e-15 Score=132.53 Aligned_cols=156 Identities=26% Similarity=0.302 Sum_probs=124.6
Q ss_pred cccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCcccccccc
Q 047584 564 FGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESV 643 (883)
Q Consensus 564 ~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i 643 (883)
++.+.++++...|.+..+. + ...++.+..+++|++|++++|+++++|.+|+.|+.|+.|++.-|++..+|..|
T Consensus 26 ~~gLf~~s~ITrLtLSHNK------l-~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNK------L-TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cccccchhhhhhhhcccCc------e-eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 3445556666666554432 1 34577788999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEecCCCCch-hhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccC
Q 047584 644 NKLYNLHSLLLEDCDRL-KKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHL 722 (883)
Q Consensus 644 ~~l~~L~~L~l~~c~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L 722 (883)
+.++-|++|||++|+.- ..+|..|..+..|+-|+++.|. ...+|+.+++|++||.|..-+.+- .....+++.|++|
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt~l 175 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLTRL 175 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCch--hhCcHHHHHHHHH
Confidence 99999999999996533 5689889999999999999998 889999999999999994432221 2345677777777
Q ss_pred CCeeEEec
Q 047584 723 ERTLKISK 730 (883)
Q Consensus 723 ~~~L~i~~ 730 (883)
+ .|+|.+
T Consensus 176 r-elhiqg 182 (264)
T KOG0617|consen 176 R-ELHIQG 182 (264)
T ss_pred H-HHhccc
Confidence 7 666654
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.39 E-value=2.4e-14 Score=160.83 Aligned_cols=251 Identities=27% Similarity=0.336 Sum_probs=154.7
Q ss_pred CCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceec
Q 047584 599 KLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKN 678 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l 678 (883)
+..+|++||+++|.+..+|..|..+.+|+.|+++.|.|...|.+++++.+|++|+|.+ +.+..+|.++..+++|++|++
T Consensus 43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred heeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhccccccc
Confidence 3444888888888888888888888888888888888888888888888888888875 677788888888888888888
Q ss_pred CCCCCccccCccCCCCCCCCccCceE------------------eCcCCCCCcccccccccCCCeeEEeccCCCCCccch
Q 047584 679 SNTDSLEEMPLGIVRLTCLQTLCNFV------------------VAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDA 740 (883)
Q Consensus 679 ~~~~~~~~~p~~i~~L~~L~~L~~~~------------------~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~ 740 (883)
++|. +..+|..+..++.+..+.... .+...+..+.++.++++ .+.++..+-
T Consensus 122 S~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~---~ldLr~N~~------- 190 (1081)
T KOG0618|consen 122 SFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH---QLDLRYNEM------- 190 (1081)
T ss_pred chhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe---eeecccchh-------
Confidence 8877 666666555444433331111 01111222233333333 122211100
Q ss_pred HhhhcCCCCCCCceEEEeccCCCC-------CCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeE
Q 047584 741 MEAQMDGKKNLKELSLNWTCSTDG-------SSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVT 813 (883)
Q Consensus 741 ~~~~l~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~ 813 (883)
....+..+.+|+.|....+..... .......+....+.....+.+|++++++.+.+..+|+|+.. +.+|+.
T Consensus 191 ~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~--~~nle~ 268 (1081)
T KOG0618|consen 191 EVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGA--CANLEA 268 (1081)
T ss_pred hhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHh--cccceE
Confidence 011122233333332221110000 00000001111222334467999999999999999999976 999999
Q ss_pred EEEecCCCCCCCC-CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccc
Q 047584 814 LKFENCGICTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFED 871 (883)
Q Consensus 814 L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~ 871 (883)
|.+.+|.. ..+| .+....+|+.|.+..| .++++|....+ +.+|++|+|..
T Consensus 269 l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~------~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 269 LNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEG------LKSLRTLDLQS 319 (1081)
T ss_pred ecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccc------cceeeeeeehh
Confidence 99999976 4455 6777889999999877 78888865443 78888887764
No 17
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.32 E-value=3.8e-10 Score=126.24 Aligned_cols=302 Identities=13% Similarity=0.074 Sum_probs=177.0
Q ss_pred CcccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 185 LVEAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
+.+..++||++++++|...|...-. ......+.|+|++|+|||++++.++++.......-..+++++....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3557899999999999998854311 12335678999999999999999998543322223467777777778888999
Q ss_pred HHHHHhccCCC--CCCChHHHHHHHHHHhC--CCcEEEEEeCCCCCC----hhhHhhhcccccCCCCCcE--EEEeCCCh
Q 047584 265 TILSSITKQTV--DNNDLNFLQEELKKQLS--RKKFLLVLDDVWNEN----YTDWARLSLPFQAGAQGSK--IVVTTRNE 334 (883)
Q Consensus 265 ~il~~l~~~~~--~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--ilvTTR~~ 334 (883)
.++.++..... ...+.+++...+.+.+. +++.+||||+++... .+.+..+...+.. ..+++ +|.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 99999875322 23355667777777775 456899999997632 1223333222221 12333 55555554
Q ss_pred hHHHhcC-------CCccEeCCCCCHHhHHHHHHhhhcCCC--CCCCCccHHHHHHHHHHhcCCChHHHHHHHhhh--c-
Q 047584 335 EVAKIMS-------LDQAYELKSLSTEDCLSVLAQHSLETT--DFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLL--H- 402 (883)
Q Consensus 335 ~va~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~--~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l--~- 402 (883)
.+..... ....+.+++++.++...++..++-... ..-.+..++.+++......|..+.|+.++-.+. +
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3332211 124678999999999999987763211 111222233333333333466777776654321 1
Q ss_pred --CCC--ChHHHHHHHhcccccCCCCCCCchhHHHHhhcCCChhHHHHhhHhccC-CC-CceeCHHHHHHH--HHhCCCC
Q 047584 403 --GKP--YKREWKGVLSSKIWELPEDRCPIIPALAVSYYYLPPILKQCFAYCSLF-PK-DYEFDEEEIILL--WCASGFL 474 (883)
Q Consensus 403 --~~~--~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f-p~-~~~i~~~~li~~--Wiaeg~i 474 (883)
+.. +.+......+.. -.....-.+..||.+.|..+..++.. .. ...+....+... .+++.+-
T Consensus 264 ~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 111 234444444322 11234556889999888776655532 21 134555555532 3332211
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCccccc
Q 047584 475 DHKESGNPNEDLGRKFFQELRSRSFFQQS 503 (883)
Q Consensus 475 ~~~~~~~~~e~~~~~~l~~L~~~sllq~~ 503 (883)
. ..........|+.+|...++|+..
T Consensus 334 ~----~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 Y----EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred C----CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 0 111234456689999999999854
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=2.4e-12 Score=150.76 Aligned_cols=83 Identities=18% Similarity=0.289 Sum_probs=56.5
Q ss_pred CceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCC
Q 047584 601 QRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSN 680 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~ 680 (883)
.+|++|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|++|++++ +.+..+|..+. ++|++|++++
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCC
Confidence 467777777777777776553 367777777777777776654 4677777775 45666776543 4777777777
Q ss_pred CCCccccCccC
Q 047584 681 TDSLEEMPLGI 691 (883)
Q Consensus 681 ~~~~~~~p~~i 691 (883)
|. +..+|..+
T Consensus 293 N~-Lt~LP~~l 302 (754)
T PRK15370 293 NS-IRTLPAHL 302 (754)
T ss_pred Cc-cccCcccc
Confidence 76 66666543
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.31 E-value=8.8e-12 Score=145.11 Aligned_cols=230 Identities=21% Similarity=0.183 Sum_probs=127.9
Q ss_pred CceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCC
Q 047584 601 QRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSN 680 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~ 680 (883)
.+|+.|++.+|.++.+|.. +++|++|+|++|.++.+|.. .++|+.|++++| .+..+|.. .++|+.|++++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~l---p~~L~~L~Ls~ 291 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN-PLTHLPAL---PSGLCKLWIFG 291 (788)
T ss_pred cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC-chhhhhhc---hhhcCEEECcC
Confidence 4788999999999988863 57899999999999998864 357888888874 56666652 24566667776
Q ss_pred CCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEecc
Q 047584 681 TDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTC 760 (883)
Q Consensus 681 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 760 (883)
|. +..+|.. +++|+.| +++.+....+..+. ..|+ .|.+.+.. . ..++. -..+|+.|+|+.|.
T Consensus 292 N~-Lt~LP~~---p~~L~~L---dLS~N~L~~Lp~lp--~~L~-~L~Ls~N~----L-~~LP~---lp~~Lq~LdLS~N~ 353 (788)
T PRK15387 292 NQ-LTSLPVL---PPGLQEL---SVSDNQLASLPALP--SELC-KLWAYNNQ----L-TSLPT---LPSGLQELSVSDNQ 353 (788)
T ss_pred Cc-ccccccc---cccccee---ECCCCccccCCCCc--cccc-ccccccCc----c-ccccc---cccccceEecCCCc
Confidence 65 5666542 2344444 22211111111110 1122 22221100 0 00110 01245556655542
Q ss_pred CCCCCCCcchh----hHHhhhcCCC-CCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCccc
Q 047584 761 STDGSSSREAE----TEMGVLDVLK-PHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLK 835 (883)
Q Consensus 761 ~~~~~~~~~~~----~~~~~l~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~ 835 (883)
....+...... .....+..++ .+.+|+.|++++|.+..+|.. .++|+.|+|++|.. ..+|.+ ..+|+
T Consensus 354 Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l-----~s~L~~LdLS~N~L-ssIP~l--~~~L~ 425 (788)
T PRK15387 354 LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL-----PSELKELMVSGNRL-TSLPML--PSGLL 425 (788)
T ss_pred cCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc-----ccCCCEEEccCCcC-CCCCcc--hhhhh
Confidence 22111000000 0000011111 124678888888877777743 35788888888753 446643 34678
Q ss_pred ceeccCcccceecCCCccCCCCCCCCCCcceeeccccc
Q 047584 836 HLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 836 ~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
.|++++| .++.+|..+.. +++|+.|+|++++
T Consensus 426 ~L~Ls~N-qLt~LP~sl~~------L~~L~~LdLs~N~ 456 (788)
T PRK15387 426 SLSVYRN-QLTRLPESLIH------LSSETTVNLEGNP 456 (788)
T ss_pred hhhhccC-cccccChHHhh------ccCCCeEECCCCC
Confidence 8888766 57777766544 7888888888865
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=4.4e-14 Score=127.59 Aligned_cols=88 Identities=27% Similarity=0.427 Sum_probs=67.2
Q ss_pred hhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCC
Q 047584 594 LPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKL 673 (883)
Q Consensus 594 ~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L 673 (883)
.+.++++.+..-|.|++|.++.+|+.|..|.+|+.|++++|.|+++|.+++.+++|+.|+++- +.+..+|.+|+.++.|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchh
Confidence 345566777777778888887777778888888888888888888888888888888887776 5677777777777777
Q ss_pred CceecCCCC
Q 047584 674 HHLKNSNTD 682 (883)
Q Consensus 674 ~~L~l~~~~ 682 (883)
+.|++..|+
T Consensus 105 evldltynn 113 (264)
T KOG0617|consen 105 EVLDLTYNN 113 (264)
T ss_pred hhhhccccc
Confidence 777777765
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.29 E-value=1.1e-12 Score=156.17 Aligned_cols=235 Identities=27% Similarity=0.347 Sum_probs=167.9
Q ss_pred CCCceeEEeeCCCC--CCCcCcc-ccCCCcccEEeccCC-CccccccccccCCCccEEecCCCCchhhchhhhcCcCCCC
Q 047584 599 KLQRLRVFSLRGYC--IPELPDS-VGDLRYLRYLNLSGT-VIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLH 674 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~--~~~lp~~-i~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~ 674 (883)
+++.|+.|-+.+|. +..++.. +..++.|++|||++| .+.++|.+|++|.+|++|++++ +.+..+|.++.+|.+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhh
Confidence 45579999898886 5666543 678999999999976 5789999999999999999999 68999999999999999
Q ss_pred ceecCCCCCccccCccCCCCCCCCccCceEeC-cCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCc
Q 047584 675 HLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVA-KDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKE 753 (883)
Q Consensus 675 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~-~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~ 753 (883)
||++..+..+..+|..+..|++|++|..+... ..+...+.++.+|.+|+ .+++..... .....+..+.+|.+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~~~s~------~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSITISSV------LLLEDLLGMTRLRS 694 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheeecchh------HhHhhhhhhHHHHH
Confidence 99999988666666556669999999776654 34455677788888887 666643211 11112333444443
Q ss_pred eEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCC-cCCCc---CC-CCCeeEEEEecCCCCCCCCCC
Q 047584 754 LSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFP-TWLGD---SL-FSNLVTLKFENCGICTALPSV 828 (883)
Q Consensus 754 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~---~~-l~~L~~L~L~~~~~~~~l~~l 828 (883)
+...-+... .........+..+.+|+.|.+.++.+.+.+ .|... .. |++|.++.+.+|.....+.+.
T Consensus 695 ~~~~l~~~~--------~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 695 LLQSLSIEG--------CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred HhHhhhhcc--------cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 322211000 011223445667789999999999876432 23221 12 568888888888877777777
Q ss_pred CCcCcccceeccCcccceecC
Q 047584 829 GQLPSLKHLVVCGMSSVRRLD 849 (883)
Q Consensus 829 ~~lp~L~~L~L~~~~~l~~i~ 849 (883)
.-.|+|+.|.+..|..++.+.
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred hccCcccEEEEecccccccCC
Confidence 778999999999998777654
No 22
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.23 E-value=4.4e-09 Score=116.43 Aligned_cols=305 Identities=11% Similarity=0.074 Sum_probs=174.8
Q ss_pred CCcccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhh-ccC---CeEEEEEeCCCCCH
Q 047584 184 SLVEAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ-DHF---DLKAWTCVSEDFDV 259 (883)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~s~~~~~ 259 (883)
.+.|..++||+.++++|..+|..... ......+.|+|++|+|||++++.+++...-. ... -..+|+++....+.
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~ 88 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTL 88 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCH
Confidence 34557899999999999999864211 1234578999999999999999999853211 111 14577888777778
Q ss_pred HHHHHHHHHHhcc---CCC-CCCChHHHHHHHHHHhC--CCcEEEEEeCCCCCC---hhhHhhhcccc-cCCC--CCcEE
Q 047584 260 KGLTRTILSSITK---QTV-DNNDLNFLQEELKKQLS--RKKFLLVLDDVWNEN---YTDWARLSLPF-QAGA--QGSKI 327 (883)
Q Consensus 260 ~~~~~~il~~l~~---~~~-~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~i 327 (883)
..++..|+.++.. ... ...+..+....+.+.+. +++++||||+++... ......+.... .... ....+
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence 8899999999842 111 12244455555666553 568899999996651 11122222110 1111 22334
Q ss_pred EEeCCChhHHHhc-----C--CCccEeCCCCCHHhHHHHHHhhhcCC-CCCCCCccHHHHHHHHHHhcCCChHHH-HHHH
Q 047584 328 VVTTRNEEVAKIM-----S--LDQAYELKSLSTEDCLSVLAQHSLET-TDFSSHKSLEEIGKEIVIKCNGLPLAA-KTLG 398 (883)
Q Consensus 328 lvTTR~~~va~~~-----~--~~~~~~l~~L~~~~~~~Lf~~~a~~~-~~~~~~~~l~~~~~~I~~~c~GlPLai-~~~~ 398 (883)
|.+|......... . ....+.+++++.++..+++..++-.. ......++..+...+++..+.|.|-.+ .++-
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~ 248 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 248 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4455433322111 1 12468899999999999998876311 111122333345566777777888433 3222
Q ss_pred hhh--c---CC--CChHHHHHHHhcccccCCCCCCCchhHHHHhhcCCChhHHHHhhHhccCC--CCceeCHHHHHHHH-
Q 047584 399 GLL--H---GK--PYKREWKGVLSSKIWELPEDRCPIIPALAVSYYYLPPILKQCFAYCSLFP--KDYEFDEEEIILLW- 468 (883)
Q Consensus 399 ~~l--~---~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~~~~li~~W- 468 (883)
... + +. -+.+......+.. -.....-+...||.+.+..+..+...- ++..+....+...+
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 111 1 11 1223333322221 113344567899998887666654221 33446666666633
Q ss_pred -HhCCCCcCCCCCCChHHHHHHHHHHHHhcCcccccC
Q 047584 469 -CASGFLDHKESGNPNEDLGRKFFQELRSRSFFQQSA 504 (883)
Q Consensus 469 -iaeg~i~~~~~~~~~e~~~~~~l~~L~~~sllq~~~ 504 (883)
+++.+ . .....+.....++.+|...|++....
T Consensus 319 ~~~~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 319 EVCEDI-G---VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHhc-C---CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 12211 1 11234566788899999999998643
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=7e-13 Score=135.50 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=64.1
Q ss_pred CCCCCCcceEEEEecCCCCC-CcCCCcCCCCCeeEEEEecCCCCCCCC--CCCCcCcccceeccCcccceecCCCccCCC
Q 047584 780 LKPHANLEQFCIKGYGGMKF-PTWLGDSLFSNLVTLKFENCGICTALP--SVGQLPSLKHLVVCGMSSVRRLDPEFYGKD 856 (883)
Q Consensus 780 l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~ 856 (883)
+..+++|++|++++|.++.+ +.|+.. ...|+.|.|..|+. ..+. .+..+..|+.|+|++| .|+.+....+.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~--~a~l~eL~L~~N~l-~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~-- 343 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEG--AAELQELYLTRNKL-EFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQ-- 343 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcc--hhhhhhhhcCcchH-HHHHHHhhhccccceeeeecCC-eeEEEeccccc--
Confidence 55678999999999998876 567765 88999999999854 3333 6778999999999998 66666544333
Q ss_pred CCCCCCCcceeeccccc
Q 047584 857 ASIPFPYLETLRFEDME 873 (883)
Q Consensus 857 ~~~~~p~L~~L~l~~~~ 873 (883)
...+|.+|.+-..|
T Consensus 344 ---~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 344 ---TLFSLSTLNLLSNP 357 (498)
T ss_pred ---ccceeeeeehccCc
Confidence 36677777776544
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.20 E-value=1.6e-09 Score=114.50 Aligned_cols=182 Identities=21% Similarity=0.191 Sum_probs=115.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHH----H
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKK----Q 290 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~----~ 290 (883)
..++.|+|++|+|||||++.+++.... ..+ ..+|+ +....+..+++..++..++.... ..+.......+.+ .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHH
Confidence 358999999999999999999985331 111 12333 33345778888888888765432 2222233333332 2
Q ss_pred -hCCCcEEEEEeCCCCCChhhHhhhccccc---CCCCCcEEEEeCCChhHHHhcC----------CCccEeCCCCCHHhH
Q 047584 291 -LSRKKFLLVLDDVWNENYTDWARLSLPFQ---AGAQGSKIVVTTRNEEVAKIMS----------LDQAYELKSLSTEDC 356 (883)
Q Consensus 291 -L~~kr~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTTR~~~va~~~~----------~~~~~~l~~L~~~~~ 356 (883)
..+++.+||+||+|..+...++.+..... .......|++|.... ...... ....+.+++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 26788999999999887666666543221 111223445555432 222111 124578999999999
Q ss_pred HHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhh
Q 047584 357 LSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLL 401 (883)
Q Consensus 357 ~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 401 (883)
..++..............-.++..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999887654322111112235789999999999999999888765
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.19 E-value=4.8e-11 Score=140.02 Aligned_cols=198 Identities=16% Similarity=0.246 Sum_probs=118.8
Q ss_pred CceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCC
Q 047584 601 QRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSN 680 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~ 680 (883)
++|+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++| .+..+|..+. .+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence 356666676666666665543 366667776666666665443 35666666663 4556665543 4666666666
Q ss_pred CCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEecc
Q 047584 681 TDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTC 760 (883)
Q Consensus 681 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 760 (883)
|. +..+|..+. ++|++| .+.+.. +.. ++..+ .++|+.|++++|.
T Consensus 272 N~-L~~LP~~l~--~sL~~L--------------------------~Ls~N~-Lt~----LP~~l--p~sL~~L~Ls~N~ 315 (754)
T PRK15370 272 NK-ISCLPENLP--EELRYL--------------------------SVYDNS-IRT----LPAHL--PSGITHLNVQSNS 315 (754)
T ss_pred Cc-cCccccccC--CCCcEE--------------------------ECCCCc-ccc----Ccccc--hhhHHHHHhcCCc
Confidence 55 555655432 234443 221110 000 01111 1357778887642
Q ss_pred CCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceec
Q 047584 761 STDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVV 839 (883)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L 839 (883)
... ... ..+++|+.|++++|.+..+|..+ .++|+.|+|++|.. ..+| .+ .++|+.|+|
T Consensus 316 Lt~------------LP~--~l~~sL~~L~Ls~N~Lt~LP~~l----~~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdL 374 (754)
T PRK15370 316 LTA------------LPE--TLPPGLKTLEAGENALTSLPASL----PPELQVLDVSKNQI-TVLPETL--PPTITTLDV 374 (754)
T ss_pred ccc------------CCc--cccccceeccccCCccccCChhh----cCcccEEECCCCCC-CcCChhh--cCCcCEEEC
Confidence 211 001 12368999999999999898765 47999999999964 4566 33 379999999
Q ss_pred cCcccceecCCCccCCCCCCCCCCcceeeccc
Q 047584 840 CGMSSVRRLDPEFYGKDASIPFPYLETLRFED 871 (883)
Q Consensus 840 ~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~ 871 (883)
++| .+..+|..+ .++|+.|++++
T Consensus 375 s~N-~Lt~LP~~l--------~~sL~~LdLs~ 397 (754)
T PRK15370 375 SRN-ALTNLPENL--------PAALQIMQASR 397 (754)
T ss_pred CCC-cCCCCCHhH--------HHHHHHHhhcc
Confidence 988 677777543 23566666665
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.14 E-value=3.7e-10 Score=131.74 Aligned_cols=239 Identities=23% Similarity=0.177 Sum_probs=133.0
Q ss_pred CCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCC
Q 047584 545 SRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLR 624 (883)
Q Consensus 545 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~ 624 (883)
+..+++|.+..+.... ++. .+++|++|.+..+.. . .++ . ..++|+.|+|++|.+..+|... .
T Consensus 221 ~~~L~~L~L~~N~Lt~---LP~--lp~~Lk~LdLs~N~L------t-sLP-~--lp~sL~~L~Ls~N~L~~Lp~lp---~ 282 (788)
T PRK15387 221 PAHITTLVIPDNNLTS---LPA--LPPELRTLEVSGNQL------T-SLP-V--LPPGLLELSIFSNPLTHLPALP---S 282 (788)
T ss_pred hcCCCEEEccCCcCCC---CCC--CCCCCcEEEecCCcc------C-ccc-C--cccccceeeccCCchhhhhhch---h
Confidence 3455666655443322 222 245666666544331 1 111 1 1356677777777776666532 4
Q ss_pred cccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCceE
Q 047584 625 YLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFV 704 (883)
Q Consensus 625 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 704 (883)
.|+.|++++|.++.+|.. +++|+.|++++| .+..+|.. ..+|+.|++++|. +..+|... .+|+.|.
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~lp---~~Lq~Ld--- 348 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNNQ-LTSLPTLP---SGLQELS--- 348 (788)
T ss_pred hcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC---cccccccccccCc-cccccccc---cccceEe---
Confidence 566777777777777653 356777777773 55566542 2346666777665 56666321 3455552
Q ss_pred eCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCC
Q 047584 705 VAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHA 784 (883)
Q Consensus 705 ~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 784 (883)
++.+.-..+..+ ..+|+ .|.+.+.. . ..++. ...+|+.|+++.|... .+.. .++
T Consensus 349 LS~N~Ls~LP~l--p~~L~-~L~Ls~N~----L-~~LP~---l~~~L~~LdLs~N~Lt-------------~LP~--l~s 402 (788)
T PRK15387 349 VSDNQLASLPTL--PSELY-KLWAYNNR----L-TSLPA---LPSGLKELIVSGNRLT-------------SLPV--LPS 402 (788)
T ss_pred cCCCccCCCCCC--Ccccc-eehhhccc----c-ccCcc---cccccceEEecCCccc-------------CCCC--ccc
Confidence 222111111111 11222 22222110 0 01121 1246888888764211 1111 136
Q ss_pred CcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCccccee
Q 047584 785 NLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMSSVRR 847 (883)
Q Consensus 785 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~ 847 (883)
+|+.|++++|.+..+|.. +.+|+.|+|++|.. +.+| .++.+++|+.|+|++|+.-+.
T Consensus 403 ~L~~LdLS~N~LssIP~l-----~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 403 ELKELMVSGNRLTSLPML-----PSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCCEEEccCCcCCCCCcc-----hhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCCCCch
Confidence 899999999999888863 35788999999864 4677 688899999999998864333
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.11 E-value=2.1e-10 Score=118.43 Aligned_cols=194 Identities=23% Similarity=0.212 Sum_probs=100.0
Q ss_pred eecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHH---
Q 047584 190 VYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTI--- 266 (883)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i--- 266 (883)
|+||+.|+++|.+++..+. .+.+.|+|+.|+|||+|++.+.+..+ ...+ ..+|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~-~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINELK-EKGY-KVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHHhh-hcCC-cEEEEecccchhh-hHHHHHHHH
Confidence 7899999999999996542 47899999999999999999998421 1112 3444444443322 222222
Q ss_pred -------HHHhc----cCCC------CCCChHHHHHHHHHHh--CCCcEEEEEeCCCCCC------hhhHhhhcccccC-
Q 047584 267 -------LSSIT----KQTV------DNNDLNFLQEELKKQL--SRKKFLLVLDDVWNEN------YTDWARLSLPFQA- 320 (883)
Q Consensus 267 -------l~~l~----~~~~------~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~- 320 (883)
...+. .... ...........+.+.+ .+++++||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11111 1100 0111122222333333 2346999999996543 1111222222222
Q ss_pred --CCCCcEEEEeCCChhHHHh--------cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCC
Q 047584 321 --GAQGSKIVVTTRNEEVAKI--------MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGL 390 (883)
Q Consensus 321 --~~~gs~ilvTTR~~~va~~--------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl 390 (883)
..+.+ +|+++....+... .+....+.+++|+.+++++++....-... .. +.-.+..++|+..+||+
T Consensus 152 ~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~--~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 152 LSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELI--KL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ---TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred cccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhh--cc-cCCHHHHHHHHHHhCCC
Confidence 33344 4444444444332 12234599999999999999998643321 11 12255679999999999
Q ss_pred hHHHHH
Q 047584 391 PLAAKT 396 (883)
Q Consensus 391 PLai~~ 396 (883)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988764
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.09 E-value=2.1e-09 Score=115.68 Aligned_cols=277 Identities=16% Similarity=0.149 Sum_probs=152.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+|+|++..++.|..++..... .......+.++|++|+|||+||+.+++. ....| ..+..+...... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCch-hHHHHH
Confidence 4699999999999988863211 1123456889999999999999999874 22222 112211111111 222223
Q ss_pred HHhccCCC-CCCCh----HHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHHHhc--
Q 047584 268 SSITKQTV-DNNDL----NFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAKIM-- 340 (883)
Q Consensus 268 ~~l~~~~~-~~~~~----~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~-- 340 (883)
..+..... -.++. ......+...+.+.+..+|+++.... ..| ...+ .+.+-|..||+...+....
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RLDL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cce---eecC---CCeEEEEecCCccccCHHHHh
Confidence 33322110 00010 12234455556666666677665433 111 1111 1245566777765443321
Q ss_pred CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCCChHHHHHHHhccccc
Q 047584 341 SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREWKGVLSSKIWE 420 (883)
Q Consensus 341 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~ 420 (883)
.....+.+++++.++..+++.+.+..... .--++.+..|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 12346789999999999999987753221 1125667889999999997655444322 11100000000
Q ss_pred CCCC-CCCchhHHHHhhcCCChhHHHHhh-HhccCCCCceeCHHHHHHHHHhCCCCcCCCCCCChHHHHHHHHH-HHHhc
Q 047584 421 LPED-RCPIIPALAVSYYYLPPILKQCFA-YCSLFPKDYEFDEEEIILLWCASGFLDHKESGNPNEDLGRKFFQ-ELRSR 497 (883)
Q Consensus 421 ~~~~-~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~-~L~~~ 497 (883)
.... -......+...|..|+++.+..+. .++.++.+ .+..+.+.... + .....++..++ .|+++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-----------g-~~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-----------G-EDADTIEDVYEPYLLQI 283 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-----------C-CCcchHHHhhhHHHHHc
Confidence 0000 001222245678889988887776 55777544 45555544432 1 12345666678 69999
Q ss_pred CcccccC
Q 047584 498 SFFQQSA 504 (883)
Q Consensus 498 sllq~~~ 504 (883)
+||+...
T Consensus 284 ~li~~~~ 290 (305)
T TIGR00635 284 GFLQRTP 290 (305)
T ss_pred CCcccCC
Confidence 9997544
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.08 E-value=3.2e-09 Score=114.94 Aligned_cols=277 Identities=16% Similarity=0.183 Sum_probs=151.7
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+|+|++..++.+..++..... .......+.|+|++|+|||+||+.+++.. ...+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHHH
Confidence 6799999999999888753211 12235678899999999999999999843 2221 112211 112222233333
Q ss_pred HHhccCCC-CCCCh----HHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHHHhc--
Q 047584 268 SSITKQTV-DNNDL----NFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAKIM-- 340 (883)
Q Consensus 268 ~~l~~~~~-~~~~~----~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~-- 340 (883)
..+..... -.++. ....+.+...+.+.+..+|+|+..+.. .+...+ .+.+-|..||+...+....
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHHHHH
Confidence 33321110 00011 112223444444555555555543321 011111 1245566677754433321
Q ss_pred CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCCChHHHHHHHhccccc
Q 047584 341 SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREWKGVLSSKIWE 420 (883)
Q Consensus 341 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~ 420 (883)
.....+.+++++.++..+++.+.+..... .--++.+..|++.|+|.|-.+..+...+ ..|...... ..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~--~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD--GV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC--CC
Confidence 12356899999999999999987654321 1124678999999999996544444322 122211100 00
Q ss_pred CCCC-CCCchhHHHHhhcCCChhHHHHhh-HhccCCCCceeCHHHHHHHHHhCCCCcCCCCCCChHHHHHHHHH-HHHhc
Q 047584 421 LPED-RCPIIPALAVSYYYLPPILKQCFA-YCSLFPKDYEFDEEEIILLWCASGFLDHKESGNPNEDLGRKFFQ-ELRSR 497 (883)
Q Consensus 421 ~~~~-~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~-~L~~~ 497 (883)
+... -......+...+..|++..+..+. ....|+.+ .+..+.+.... ....+.++..++ .|++.
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------------g~~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------------GEERDTIEDVYEPYLIQQ 304 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------------CCCcchHHHHhhHHHHHc
Confidence 0000 012233455667889888888776 77778766 57776665433 112234555566 89999
Q ss_pred CcccccC
Q 047584 498 SFFQQSA 504 (883)
Q Consensus 498 sllq~~~ 504 (883)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9998654
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.07 E-value=1e-08 Score=115.98 Aligned_cols=288 Identities=19% Similarity=0.239 Sum_probs=185.6
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC-CCHHHHHHHHHHHhccCCC-
Q 047584 198 KEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED-FDVKGLTRTILSSITKQTV- 275 (883)
Q Consensus 198 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~- 275 (883)
.+|++.|... ...+++.|..++|.|||||+.+.+. .. ..=..+.|.++.+. -++....+.++..+..-.+
T Consensus 25 ~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 4566666443 2479999999999999999999874 11 12246899998765 5677888888877763221
Q ss_pred ------------CCCChHHHHHHHHHHhC--CCcEEEEEeCCCCCChhhHhh-hcccccCCCCCcEEEEeCCChhH---H
Q 047584 276 ------------DNNDLNFLQEELKKQLS--RKKFLLVLDDVWNENYTDWAR-LSLPFQAGAQGSKIVVTTRNEEV---A 337 (883)
Q Consensus 276 ------------~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~ilvTTR~~~v---a 337 (883)
...+...+...+...+. .++..+||||..-........ +...+.....+-.+|||||...- +
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 12233444444544443 568999999986554333333 34444455567889999998642 2
Q ss_pred HhcCCCccEeC----CCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCCChHHHHHH
Q 047584 338 KIMSLDQAYEL----KSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREWKGV 413 (883)
Q Consensus 338 ~~~~~~~~~~l----~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~ 413 (883)
+..-.....++ =.++.+|+-.+|....... -.+..++.|.+..+|=+-|+..++-.++.+.+.+.-...
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~-------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~ 249 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP-------LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRG 249 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC-------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhh
Confidence 22111122222 3588999999998864221 114558899999999999999998888744322221111
Q ss_pred HhcccccCCCCCCCchh-HHHHhhcCCChhHHHHhhHhccCCCCceeCHHHHHHHHHhCCCCcCCCCCCChHHHHHHHHH
Q 047584 414 LSSKIWELPEDRCPIIP-ALAVSYYYLPPILKQCFAYCSLFPKDYEFDEEEIILLWCASGFLDHKESGNPNEDLGRKFFQ 492 (883)
Q Consensus 414 ~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~ 492 (883)
+ ....+.+.. ...--++.||+++|..+.-||+++.- -+.|+..- +-++-+...++
T Consensus 250 L-------sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-------------tg~~ng~amLe 305 (894)
T COG2909 250 L-------SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-------------TGEENGQAMLE 305 (894)
T ss_pred c-------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-------------hcCCcHHHHHH
Confidence 1 111111111 23446789999999999999999632 23333322 12234667899
Q ss_pred HHHhcCccc-ccCCCCCcEEecchHHHHHHHHh
Q 047584 493 ELRSRSFFQ-QSATDASRFVMHDLINDLARWAA 524 (883)
Q Consensus 493 ~L~~~sllq-~~~~~~~~~~~Hdlv~~~a~~~~ 524 (883)
+|.+++|+- +-++....|+.|.++.||.+.--
T Consensus 306 ~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 306 ELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred HHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 999999874 45566679999999999988544
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=3.9e-11 Score=130.45 Aligned_cols=120 Identities=20% Similarity=0.156 Sum_probs=65.6
Q ss_pred hhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCC-----CcCCCcCCCCCeeEEEEe
Q 047584 743 AQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKF-----PTWLGDSLFSNLVTLKFE 817 (883)
Q Consensus 743 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~L~ 817 (883)
..+..+++|+.|+++.|... ..........+..+++|++|++++|..... ...+.. ..+.|++|+++
T Consensus 187 ~~l~~~~~L~~L~L~~n~i~-------~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~-~~~~L~~L~l~ 258 (319)
T cd00116 187 EGLKANCNLEVLDLNNNGLT-------DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS-PNISLLTLSLS 258 (319)
T ss_pred HHHHhCCCCCEEeccCCccC-------hHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc-cCCCceEEEcc
Confidence 34555678888888775221 111122334455668888888888776531 111110 13788999998
Q ss_pred cCCCCC----CC-CCCCCcCcccceeccCcccceecCCCccCCCCCCCC-CCcceeecccc
Q 047584 818 NCGICT----AL-PSVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPF-PYLETLRFEDM 872 (883)
Q Consensus 818 ~~~~~~----~l-~~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~-p~L~~L~l~~~ 872 (883)
+|.... .+ ..+..+++|++|++++| .+..-+..... .....+ +.|++|++.+-
T Consensus 259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLA-ESLLEPGNELESLWVKDD 317 (319)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHH-HHHhhcCCchhhcccCCC
Confidence 886531 11 14455688899999877 33322111000 011224 67777766553
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.98 E-value=1.5e-11 Score=125.85 Aligned_cols=106 Identities=27% Similarity=0.369 Sum_probs=73.1
Q ss_pred chhhhc-CCCceeEEeeCCCCCCCc-CccccCCCcccEEeccC-CCcccccc-ccccCCCccEEecCCCCchhhch-hhh
Q 047584 593 ILPKLL-KLQRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSG-TVIRSLPE-SVNKLYNLHSLLLEDCDRLKKLC-ADM 667 (883)
Q Consensus 593 ~~~~l~-~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~-~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp-~~i 667 (883)
+++..| .+++||.|||+.|.|+.+ |+.+.+|..|-.|-+.+ |+|+.+|. .|.+|..||-|.+.-| .+..++ ..+
T Consensus 82 iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~al 160 (498)
T KOG4237|consen 82 IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDAL 160 (498)
T ss_pred CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHH
Confidence 344444 778888888888888776 67777777766665544 78888875 4667888888777663 444443 457
Q ss_pred cCcCCCCceecCCCCCccccCc-cCCCCCCCCcc
Q 047584 668 GNLIKLHHLKNSNTDSLEEMPL-GIVRLTCLQTL 700 (883)
Q Consensus 668 ~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L 700 (883)
..|++|..|.+..|. +..++. .+..+.+++++
T Consensus 161 ~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 161 RDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTL 193 (498)
T ss_pred HHhhhcchhcccchh-hhhhccccccchhccchH
Confidence 778888888887776 666665 46666666666
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.94 E-value=1.9e-07 Score=106.76 Aligned_cols=306 Identities=14% Similarity=0.119 Sum_probs=164.2
Q ss_pred CCcccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhh---hccCC--eEEEEEeCCCCC
Q 047584 184 SLVEAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRV---QDHFD--LKAWTCVSEDFD 258 (883)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~s~~~~ 258 (883)
.++|..+.|||+|+++|...|...-. +.....++.|+|++|.|||++++.|.+.... ....+ .+++|++....+
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 34567899999999999988865321 1223468899999999999999999874321 11122 357788777778
Q ss_pred HHHHHHHHHHHhccCCC-CCCChHHHHHHHHHHhC---CCcEEEEEeCCCCCChhhHhhhccccc-CCCCCcEEEE--eC
Q 047584 259 VKGLTRTILSSITKQTV-DNNDLNFLQEELKKQLS---RKKFLLVLDDVWNENYTDWARLSLPFQ-AGAQGSKIVV--TT 331 (883)
Q Consensus 259 ~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~L~---~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilv--TT 331 (883)
...++..|..++....+ ...........+...+. +...+||||++..-....-+.+...+. ....+++|+| +|
T Consensus 830 p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEec
Confidence 88899999988854432 22223334444444442 224689999996432111111221111 1123555544 33
Q ss_pred CChhHH----HhcC---CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCC
Q 047584 332 RNEEVA----KIMS---LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGK 404 (883)
Q Consensus 332 R~~~va----~~~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~ 404 (883)
...+.. ..+. ....+...|++.++-..++..++-.....-.+..++-+|+.++...|..=.||.++-.+....
T Consensus 910 NdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik 989 (1164)
T PTZ00112 910 NTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK 989 (1164)
T ss_pred CchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc
Confidence 221111 1111 123477899999999999998875322222233344444544444455556666554443321
Q ss_pred CC----hHHHHHHHhcccccCCCCCCCchhHHHHhhcCCChhHHHHhhHhccC-C--CCceeCHHHHHHHH--HhC--C-
Q 047584 405 PY----KREWKGVLSSKIWELPEDRCPIIPALAVSYYYLPPILKQCFAYCSLF-P--KDYEFDEEEIILLW--CAS--G- 472 (883)
Q Consensus 405 ~~----~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f-p--~~~~i~~~~li~~W--iae--g- 472 (883)
.. .++-..+.... -...+.-....||.+.|-.+..+... - ....++...+.... +++ |
T Consensus 990 egskVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk 1059 (1164)
T PTZ00112 990 RGQKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGK 1059 (1164)
T ss_pred CCCccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhh
Confidence 11 11111111110 01123344567898877655533322 1 12235555554432 333 1
Q ss_pred CCcCCCCCCChHHHHHHHHHHHHhcCcccccC
Q 047584 473 FLDHKESGNPNEDLGRKFFQELRSRSFFQQSA 504 (883)
Q Consensus 473 ~i~~~~~~~~~e~~~~~~l~~L~~~sllq~~~ 504 (883)
.+. .....+ ....++.+|...|+|-...
T Consensus 1060 ~iG---v~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1060 YIG---MCSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred hcC---CCCcHH-HHHHHHHHHHhcCeEEecC
Confidence 111 111223 6677788888888886543
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.94 E-value=8.2e-11 Score=127.94 Aligned_cols=241 Identities=22% Similarity=0.210 Sum_probs=142.4
Q ss_pred CCCceeEEeeCCCCCC-----CcCccccCCCcccEEeccCCCccc-------cccccccCCCccEEecCCCCchhhchhh
Q 047584 599 KLQRLRVFSLRGYCIP-----ELPDSVGDLRYLRYLNLSGTVIRS-------LPESVNKLYNLHSLLLEDCDRLKKLCAD 666 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~L~~~~i~~-------lp~~i~~l~~L~~L~l~~c~~l~~lp~~ 666 (883)
.+.+|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|......+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 6677899999998874 355666777788888888876653 2345667888888888886654444555
Q ss_pred hcCcCC---CCceecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCccccccc-ccCCCeeEEeccCCCCCccchHh
Q 047584 667 MGNLIK---LHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSL-THLERTLKISKLENVKCVGDAME 742 (883)
Q Consensus 667 i~~L~~---L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L-~~L~~~L~i~~l~~~~~~~~~~~ 742 (883)
+..+.+ |++|++++|. +...+ .. .....+..+ ++|+ .|.+.+..-.......+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~-~~~~~--~~------------------~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 101 LESLLRSSSLQELKLNNNG-LGDRG--LR------------------LLAKGLKDLPPALE-KLVLGRNRLEGASCEALA 158 (319)
T ss_pred HHHHhccCcccEEEeeCCc-cchHH--HH------------------HHHHHHHhCCCCce-EEEcCCCcCCchHHHHHH
Confidence 544444 8888888876 32100 00 001112222 3444 444443322111122344
Q ss_pred hhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCC-----CCcCCCcCCCCCeeEEEEe
Q 047584 743 AQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMK-----FPTWLGDSLFSNLVTLKFE 817 (883)
Q Consensus 743 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~ 817 (883)
..+..+++|+.|++++|.... .........+..+++|+.|++++|.+.. ++..+. .+++|+.|+++
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~-------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~--~~~~L~~L~ls 229 (319)
T cd00116 159 KALRANRDLKELNLANNGIGD-------AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA--SLKSLEVLNLG 229 (319)
T ss_pred HHHHhCCCcCEEECcCCCCch-------HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc--ccCCCCEEecC
Confidence 456677899999998753221 1111233344555899999999987653 233333 37899999999
Q ss_pred cCCCCCC-CCCCC-----CcCcccceeccCcccceecCCCccCCCCCCCCCCcceeecccc
Q 047584 818 NCGICTA-LPSVG-----QLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 818 ~~~~~~~-l~~l~-----~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
+|...+. +..+. ..+.|+.|++++| .++..+..... .....+++|+.|+++++
T Consensus 230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~-~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 230 DNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLA-EVLAEKESLLELDLRGN 288 (319)
T ss_pred CCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHH-HHHhcCCCccEEECCCC
Confidence 9965431 11111 2489999999988 33311100000 01123689999998873
No 35
>PF05729 NACHT: NACHT domain
Probab=98.93 E-value=6e-09 Score=101.19 Aligned_cols=142 Identities=20% Similarity=0.250 Sum_probs=87.6
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhcc----CCeEEEEEeCCCCCHH---HHHHHHHHHhccCCCCCCChHHHHHHHH
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDH----FDLKAWTCVSEDFDVK---GLTRTILSSITKQTVDNNDLNFLQEELK 288 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l~ 288 (883)
|++.|+|.+|+||||+++.++........ +...+|++.....+.. .+...+..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 58999999999999999999975332222 4466777766544332 23333333332111 11111 222
Q ss_pred HH-hCCCcEEEEEeCCCCCChh-------hHhhhcccccC--CCCCcEEEEeCCChhH---HHhcCCCccEeCCCCCHHh
Q 047584 289 KQ-LSRKKFLLVLDDVWNENYT-------DWARLSLPFQA--GAQGSKIVVTTRNEEV---AKIMSLDQAYELKSLSTED 355 (883)
Q Consensus 289 ~~-L~~kr~LlVlDdv~~~~~~-------~~~~l~~~l~~--~~~gs~ilvTTR~~~v---a~~~~~~~~~~l~~L~~~~ 355 (883)
.. -+.++++||+|++.+.... .+..+...+.. ..++.++|||+|.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 2578999999999654321 12222222222 2568999999999766 3333444679999999999
Q ss_pred HHHHHHhh
Q 047584 356 CLSVLAQH 363 (883)
Q Consensus 356 ~~~Lf~~~ 363 (883)
..+++.++
T Consensus 155 ~~~~~~~~ 162 (166)
T PF05729_consen 155 IKQYLRKY 162 (166)
T ss_pred HHHHHHHH
Confidence 99998775
No 36
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.88 E-value=4.3e-08 Score=117.70 Aligned_cols=309 Identities=16% Similarity=0.165 Sum_probs=179.6
Q ss_pred ceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeC---CC---CCHHHH
Q 047584 189 KVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVS---ED---FDVKGL 262 (883)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s---~~---~~~~~~ 262 (883)
.++||+.+.+.|...+.... .+...++.+.|..|||||+|+++|.. .+.+.+...+-..+. .. ....+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 37899999999999986542 34457999999999999999999987 333332111111111 11 112334
Q ss_pred HHHHHHHhccC-------------------C-----------------CC-----CCChHH-----HHHHHHHHh-CCCc
Q 047584 263 TRTILSSITKQ-------------------T-----------------VD-----NNDLNF-----LQEELKKQL-SRKK 295 (883)
Q Consensus 263 ~~~il~~l~~~-------------------~-----------------~~-----~~~~~~-----~~~~l~~~L-~~kr 295 (883)
++++..++... . .+ +...+. .+..+.-.. +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 44444444110 0 00 000111 122233333 3569
Q ss_pred EEEEEeCCCCCChhhHhhhcccccCCC------CCcEEEEeCCCh--hHHHhcCCCccEeCCCCCHHhHHHHHHhhhcCC
Q 047584 296 FLLVLDDVWNENYTDWARLSLPFQAGA------QGSKIVVTTRNE--EVAKIMSLDQAYELKSLSTEDCLSVLAQHSLET 367 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~------~gs~ilvTTR~~--~va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~ 367 (883)
.++|+||+.+.|....+-+........ +..-.+.|.+.. .+.........+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999998877655544433222221 111122333332 222222344789999999999999988765432
Q ss_pred CCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCC------ChHHHHHHHhcccccCCCCCCCchhHHHHhhcCCCh
Q 047584 368 TDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKP------YKREWKGVLSSKIWELPEDRCPIIPALAVSYYYLPP 441 (883)
Q Consensus 368 ~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~------~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~ 441 (883)
. ....+....|++|..|+|+.+..+-..+.... +...|..-..+ .. .....+.+...+..-.+.||.
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~-~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LG-ILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cC-CchhhHHHHHHHHHHHhcCCH
Confidence 2 22356788999999999999998888877642 23334322211 11 111111244468889999999
Q ss_pred hHHHHhhHhccCCCCceeCHHHHHHHHHhCCCCcCCCCCCChHHHHHHHHHHHHhcCcccccC-----C--CCC-cEEec
Q 047584 442 ILKQCFAYCSLFPKDYEFDEEEIILLWCASGFLDHKESGNPNEDLGRKFFQELRSRSFFQQSA-----T--DAS-RFVMH 513 (883)
Q Consensus 442 ~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~~sllq~~~-----~--~~~-~~~~H 513 (883)
..|..+...|++-. .|+.+.|...|- +.....+....+.|....++-..+ . ... +-..|
T Consensus 309 ~t~~Vl~~AA~iG~--~F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 TTREVLKAAACIGN--RFDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHhCc--cCCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 99999999999964 456666666541 234556666566655555443211 1 111 12468
Q ss_pred chHHHHHHH
Q 047584 514 DLINDLARW 522 (883)
Q Consensus 514 dlv~~~a~~ 522 (883)
+.|++.|-.
T Consensus 376 ~~vqqaaY~ 384 (849)
T COG3899 376 DRVQQAAYN 384 (849)
T ss_pred HHHHHHHhc
Confidence 888877753
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.73 E-value=7.9e-09 Score=115.76 Aligned_cols=185 Identities=28% Similarity=0.369 Sum_probs=136.6
Q ss_pred hhhcCCCceeEEeeCCCCCCCcCccccCCC-cccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCC
Q 047584 595 PKLLKLQRLRVFSLRGYCIPELPDSVGDLR-YLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKL 673 (883)
Q Consensus 595 ~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L 673 (883)
..+..++.+..|++.++.+..+|..++.+. +|++|++++|.+..+|..+..+++|+.|++++ +.+..+|...+.+++|
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L 188 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNL 188 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhh
Confidence 344466889999999999999999888885 99999999999999998899999999999999 5789999877799999
Q ss_pred CceecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCc
Q 047584 674 HHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKE 753 (883)
Q Consensus 674 ~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~ 753 (883)
+.|++++|. +..+|..++.+..|++|..- .+. .+. ....+.++.++..
T Consensus 189 ~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~---~N~--~~~--------------------------~~~~~~~~~~l~~ 236 (394)
T COG4886 189 NNLDLSGNK-ISDLPPEIELLSALEELDLS---NNS--IIE--------------------------LLSSLSNLKNLSG 236 (394)
T ss_pred hheeccCCc-cccCchhhhhhhhhhhhhhc---CCc--cee--------------------------cchhhhhcccccc
Confidence 999999998 88888776666667776221 110 000 1112333344444
Q ss_pred eEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCC
Q 047584 754 LSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPS 827 (883)
Q Consensus 754 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~ 827 (883)
|.+..+... .....+..+++|+.|++++|.+..++. +. .+.+|+.|+++++.....+|.
T Consensus 237 l~l~~n~~~------------~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~--~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 237 LELSNNKLE------------DLPESIGNLSNLETLDLSNNQISSISS-LG--SLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccCCceee------------eccchhccccccceecccccccccccc-cc--ccCccCEEeccCccccccchh
Confidence 444332110 013445666789999999999988887 43 389999999999877666663
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.71 E-value=2.9e-07 Score=93.88 Aligned_cols=153 Identities=16% Similarity=0.192 Sum_probs=95.7
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRK 294 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~k 294 (883)
.+.+.|+|++|+|||+||+++++. .......+.|+++... ..... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 367899999999999999999984 3333445667766421 00000 1111121 3
Q ss_pred cEEEEEeCCCCCC-hhhHhh-hcccccCC-CCCcEEEE-eCCC---------hhHHHhcCCCccEeCCCCCHHhHHHHHH
Q 047584 295 KFLLVLDDVWNEN-YTDWAR-LSLPFQAG-AQGSKIVV-TTRN---------EEVAKIMSLDQAYELKSLSTEDCLSVLA 361 (883)
Q Consensus 295 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ilv-TTR~---------~~va~~~~~~~~~~l~~L~~~~~~~Lf~ 361 (883)
.-+||+||+|... ...|.. +...+... ..|..+|| |+.. ..+...+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3589999998742 234543 22223222 23555654 4443 3555555666789999999999999999
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHH
Q 047584 362 QHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLG 398 (883)
Q Consensus 362 ~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 398 (883)
+.+....- ..+ +++..-|++.+.|..-++..+-
T Consensus 172 ~~a~~~~l-~l~---~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 172 RNAYQRGI-ELS---DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 88864321 112 5778889999998776655443
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.64 E-value=1.1e-09 Score=117.65 Aligned_cols=105 Identities=27% Similarity=0.487 Sum_probs=86.9
Q ss_pred chhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCC
Q 047584 593 ILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIK 672 (883)
Q Consensus 593 ~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~ 672 (883)
++..++.|..|..|.|..|.+..+|..+++|..|.||+|+.|.+..+|..++.|+ |+.|.+++ +++..+|..++.+.+
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~t 167 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPT 167 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchh
Confidence 4445556777888888888888888888888888888888888888888888887 88888887 678888888888888
Q ss_pred CCceecCCCCCccccCccCCCCCCCCcc
Q 047584 673 LHHLKNSNTDSLEEMPLGIVRLTCLQTL 700 (883)
Q Consensus 673 L~~L~l~~~~~~~~~p~~i~~L~~L~~L 700 (883)
|.+|+.+.|. +..+|..++.|.+|+.|
T Consensus 168 l~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 168 LAHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred HHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 8888888887 77888888887777777
No 40
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.60 E-value=1.1e-07 Score=88.14 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=81.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhc---cCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQD---HFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQL 291 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L 291 (883)
.+++.|+|.+|+|||++++.+.++..... .-..++|+.+....+...+...++.++........+.+++...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 47899999999999999999998532110 134567999988889999999999999877655566777778888888
Q ss_pred CCCc-EEEEEeCCCCC-ChhhHhhhcccccCCCCCcEEEEeCCC
Q 047584 292 SRKK-FLLVLDDVWNE-NYTDWARLSLPFQAGAQGSKIVVTTRN 333 (883)
Q Consensus 292 ~~kr-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~ 333 (883)
...+ .+||+|++..- +...++.+..... ..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6554 59999999665 4444455543333 456667766554
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=3.4e-08 Score=94.52 Aligned_cols=105 Identities=29% Similarity=0.363 Sum_probs=43.6
Q ss_pred CCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCcccccccc-ccCCCccEEecCCCCchhhch--hhhcCcCCCCc
Q 047584 599 KLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESV-NKLYNLHSLLLEDCDRLKKLC--ADMGNLIKLHH 675 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~l~~c~~l~~lp--~~i~~L~~L~~ 675 (883)
.+.+|++|+|++|.|+.++ .+..+++|++|++++|.|+.+++.+ ..+++|++|++++ |.+..+- ..+..+++|++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcce
Confidence 4677788888888877774 4667788888888888888776555 3577888888877 4554432 23566778888
Q ss_pred eecCCCCCccccCc----cCCCCCCCCccCceEeC
Q 047584 676 LKNSNTDSLEEMPL----GIVRLTCLQTLCNFVVA 706 (883)
Q Consensus 676 L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 706 (883)
|++.+|+ +...+. -+..+++|+.|....+.
T Consensus 118 L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 118 LSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred eeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 8887776 443331 14456666666544443
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.58 E-value=1.2e-06 Score=97.78 Aligned_cols=177 Identities=21% Similarity=0.251 Sum_probs=106.2
Q ss_pred cceecchhhHHH---HHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKKE---IVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
.++||++..+.. |.+++... ....+.++|++|+||||||+.+++. ....| +.++.......-.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHH
Confidence 468888877655 77777443 3457888999999999999999873 22222 33322211111122
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEE--eCCChh--H-HH
Q 047584 265 TILSSITKQTVDNNDLNFLQEELKKQ-LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVV--TTRNEE--V-AK 338 (883)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TTR~~~--v-a~ 338 (883)
.++.. .... ..+++.+|++|+++.......+.+...+.. |..+++ ||.+.. + ..
T Consensus 79 ~ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 22221 1111 246788999999988765566665554432 444444 344432 1 11
Q ss_pred hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHH
Q 047584 339 IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLG 398 (883)
Q Consensus 339 ~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 398 (883)
.......+.+.+++.++.+.++.+....... ....-.++....|++.|+|.|..+..+.
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 2223367899999999999999876432110 0001225667889999999987664443
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.57 E-value=9.5e-07 Score=92.27 Aligned_cols=153 Identities=27% Similarity=0.318 Sum_probs=93.9
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCC
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSR 293 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~ 293 (883)
.+.-+..||++|+||||||+.+.. .....| ..++...+-.+-++.+++.- -+....+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e~a----------------~~~~~~g 103 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIEEA----------------RKNRLLG 103 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHHHH----------------HHHHhcC
Confidence 467788999999999999999987 344444 33343333222223332221 1223358
Q ss_pred CcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEE--eCCChhH---HHhcCCCccEeCCCCCHHhHHHHHHhhhcCCC
Q 047584 294 KKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVV--TTRNEEV---AKIMSLDQAYELKSLSTEDCLSVLAQHSLETT 368 (883)
Q Consensus 294 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TTR~~~v---a~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~ 368 (883)
++.+|++|.|+.-+..+-+.+ ||...+|.-|+| ||.+..- ....+...++.+++|+.++-.+++.+.+....
T Consensus 104 r~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred CceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhh
Confidence 999999999977654443433 444456777776 6665431 22334557899999999999999988432221
Q ss_pred C-CC-CCccH-HHHHHHHHHhcCCChH
Q 047584 369 D-FS-SHKSL-EEIGKEIVIKCNGLPL 392 (883)
Q Consensus 369 ~-~~-~~~~l-~~~~~~I~~~c~GlPL 392 (883)
. .. ....+ +++...|+..++|---
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHH
Confidence 1 11 11112 4466778888888543
No 44
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2e-06 Score=92.54 Aligned_cols=180 Identities=19% Similarity=0.263 Sum_probs=118.3
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcch----hhhccCCeEEEEEe-CCCCCHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDK----RVQDHFDLKAWTCV-SEDFDVKGL 262 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~-s~~~~~~~~ 262 (883)
.+++|-+..++.+..++.... -.....++|+.|+||||+|+.++... ....|+|...|... +....+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357898898999999986542 24677899999999999999998732 12345666555542 23333333
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHH--Hhc
Q 047584 263 TRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVA--KIM 340 (883)
Q Consensus 263 ~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va--~~~ 340 (883)
.+++.+.+...+ ..+++=++|+|++...+...+..+...+.....++.+|++|.+.+.. +..
T Consensus 78 ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 223333322111 12455677778877676678889988888878889988888664321 112
Q ss_pred CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 341 SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 341 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
.....+.+.++++++....+.+...+. . .+.+..++..++|.|.-+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~~-----~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYNDI-----K---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 234689999999999988776543111 1 344778899999998755433
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=3.3e-08 Score=94.62 Aligned_cols=84 Identities=30% Similarity=0.448 Sum_probs=29.8
Q ss_pred CCCceeEEeeCCCCCCCcCcccc-CCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhh-cCcCCCCce
Q 047584 599 KLQRLRVFSLRGYCIPELPDSVG-DLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLIKLHHL 676 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i-~~L~~L~~L 676 (883)
+...++.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++ |.+..++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEE
Confidence 5667899999999998874 565 6889999999999999985 588899999999999 6788886555 468999999
Q ss_pred ecCCCCCccc
Q 047584 677 KNSNTDSLEE 686 (883)
Q Consensus 677 ~l~~~~~~~~ 686 (883)
++++|. +..
T Consensus 94 ~L~~N~-I~~ 102 (175)
T PF14580_consen 94 YLSNNK-ISD 102 (175)
T ss_dssp E-TTS----S
T ss_pred ECcCCc-CCC
Confidence 999987 443
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.53 E-value=1.2e-06 Score=89.72 Aligned_cols=169 Identities=16% Similarity=0.190 Sum_probs=100.0
Q ss_pred chhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhcc
Q 047584 193 RETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITK 272 (883)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 272 (883)
.+..++.+.+++... ....+.|+|++|+|||+||+.+++. ........++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH------
Confidence 345666777765322 2468999999999999999999974 323334456665543211 00
Q ss_pred CCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChh-hHh-hhcccccC-CCCCcEEEEeCCChh---------HHHhc
Q 047584 273 QTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYT-DWA-RLSLPFQA-GAQGSKIVVTTRNEE---------VAKIM 340 (883)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~-~~~-~l~~~l~~-~~~gs~ilvTTR~~~---------va~~~ 340 (883)
. .+...+.+ .-+||+||++..... .|. .+...+.. ...+.++|+||+... +...+
T Consensus 82 --------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0 01111222 238999999765322 232 33333222 123457888887532 12222
Q ss_pred CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHH
Q 047584 341 SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLG 398 (883)
Q Consensus 341 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 398 (883)
.....+++.+++.++...++...+-... . +--++....|++.+.|.|..+.-+-
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~---~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRG-L---QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 2245789999999999999887543211 1 1124667888888999998776554
No 47
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.53 E-value=1.6e-07 Score=93.02 Aligned_cols=48 Identities=27% Similarity=0.401 Sum_probs=32.6
Q ss_pred ceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcch
Q 047584 189 KVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDK 239 (883)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 239 (883)
+||||+.+.+++...|... .....+.+.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999521 23356899999999999999999998843
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=1.6e-08 Score=100.17 Aligned_cols=110 Identities=22% Similarity=0.223 Sum_probs=80.9
Q ss_pred hhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCC
Q 047584 743 AQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGIC 822 (883)
Q Consensus 743 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~ 822 (883)
.++.-.++++.|+++.|.. .....+..+++|..|++++|....+-.|-.. +-|.++|.|++| .+
T Consensus 301 ESvKL~Pkir~L~lS~N~i-------------~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~K--LGNIKtL~La~N-~i 364 (490)
T KOG1259|consen 301 ESVKLAPKLRRLILSQNRI-------------RTVQNLAELPQLQLLDLSGNLLAECVGWHLK--LGNIKTLKLAQN-KI 364 (490)
T ss_pred hhhhhccceeEEeccccce-------------eeehhhhhcccceEeecccchhHhhhhhHhh--hcCEeeeehhhh-hH
Confidence 3455568888888887422 2344466778899999999988888888754 889999999988 56
Q ss_pred CCCCCCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccccc
Q 047584 823 TALPSVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 823 ~~l~~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
.++..++.|-+|..|++++| .++.+..- . ..+.+|.|+.|.+.+.|
T Consensus 365 E~LSGL~KLYSLvnLDl~~N-~Ie~ldeV-~---~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 365 ETLSGLRKLYSLVNLDLSSN-QIEELDEV-N---HIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhhHhhhhheecccccc-chhhHHHh-c---ccccccHHHHHhhcCCC
Confidence 67888888889999999877 55554321 1 13568899988888766
No 49
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=5.7e-06 Score=90.67 Aligned_cols=190 Identities=18% Similarity=0.198 Sum_probs=110.3
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|-+..++.+...+.... -...+.++|+.|+||||+|+.+.+.......+. ..++..-....++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 568999999999999886542 245678999999999999999987421110000 00000000111111
Q ss_pred HHhccC-----CCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC-hhH
Q 047584 268 SSITKQ-----TVDNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN-EEV 336 (883)
Q Consensus 268 ~~l~~~-----~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~v 336 (883)
...... .......++... +.+.+ .+++-++|+|++.......++.+...+.......++|++|.+ ..+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 110000 000011222221 11221 245569999999887666677777777665566667766654 333
Q ss_pred HHh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 337 AKI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 337 a~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
... .+....+++.+++.++....+...+-.... .--++.+..|++.++|.|-.+
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 322 223468999999999998888775532211 112456788999999988643
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=4.5e-09 Score=112.92 Aligned_cols=193 Identities=23% Similarity=0.246 Sum_probs=143.5
Q ss_pred CCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecC
Q 047584 600 LQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNS 679 (883)
Q Consensus 600 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~ 679 (883)
+.--...||+.|.+.++|..++.+..|..|.|..|.+..+|..+++|..|.+|||+. +.+..+|..++.|+ |+.|.++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEe
Confidence 344456789999999999999999999999999999999999999999999999998 68999999988876 8999999
Q ss_pred CCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEec
Q 047584 680 NTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWT 759 (883)
Q Consensus 680 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 759 (883)
+|+ ++.+|.+|+.+..|..| +++.+.. ..+++.++.+..|+.|.+..|
T Consensus 152 NNk-l~~lp~~ig~~~tl~~l---d~s~nei----------------------------~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 152 NNK-LTSLPEEIGLLPTLAHL---DVSKNEI----------------------------QSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred cCc-cccCCcccccchhHHHh---hhhhhhh----------------------------hhchHHhhhHHHHHHHHHhhh
Confidence 887 89999999855555544 2222110 012333444555555555432
Q ss_pred cCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC----CCCCcCccc
Q 047584 760 CSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP----SVGQLPSLK 835 (883)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~----~l~~lp~L~ 835 (883)
. -...++.+. .-.|..|++++|+...+|-.|.. |..|+.|.|.+|+... .| .-|...=.|
T Consensus 200 ~------------l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~--m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 200 H------------LEDLPEELC-SLPLIRLDFSCNKISYLPVDFRK--MRHLQVLQLENNPLQS-PPAQICEKGKVHIFK 263 (722)
T ss_pred h------------hhhCCHHHh-CCceeeeecccCceeecchhhhh--hhhheeeeeccCCCCC-ChHHHHhccceeeee
Confidence 1 111223333 23588999999999999998875 9999999999997643 33 445566678
Q ss_pred ceeccCc
Q 047584 836 HLVVCGM 842 (883)
Q Consensus 836 ~L~L~~~ 842 (883)
+|++..|
T Consensus 264 yL~~qA~ 270 (722)
T KOG0532|consen 264 YLSTQAC 270 (722)
T ss_pred eecchhc
Confidence 8888877
No 51
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.44 E-value=1.5e-06 Score=82.23 Aligned_cols=125 Identities=15% Similarity=0.070 Sum_probs=72.7
Q ss_pred ecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 047584 191 YGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSI 270 (883)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (883)
+|++..+..+...+... ..+.+.|+|++|+|||++|+++++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888899998888543 236899999999999999999998432 222345666665443322221111000
Q ss_pred ccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhh---HhhhcccccCC---CCCcEEEEeCCChh
Q 047584 271 TKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTD---WARLSLPFQAG---AQGSKIVVTTRNEE 335 (883)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~---~~~l~~~l~~~---~~gs~ilvTTR~~~ 335 (883)
............++.+||+||++...... +......+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00111122234568899999998642222 22222222221 35778888887643
No 52
>PF13173 AAA_14: AAA domain
Probab=98.44 E-value=5.8e-07 Score=82.69 Aligned_cols=119 Identities=19% Similarity=0.189 Sum_probs=78.9
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
+++.|.|+.|+|||||+++++.+.. ....+++++............ + +.+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccCC
Confidence 6899999999999999999997432 334567776654322110000 0 2233334444478
Q ss_pred EEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHHHhc------CCCccEeCCCCCHHhH
Q 047584 296 FLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAKIM------SLDQAYELKSLSTEDC 356 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~------~~~~~~~l~~L~~~~~ 356 (883)
.+|+||++... .+|......+.+..+..+|++|+........- +....+++.||+..|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999776 67877776776665668999999886555321 2234688999988764
No 53
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=8.6e-06 Score=93.24 Aligned_cols=180 Identities=14% Similarity=0.153 Sum_probs=113.9
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhc-------------------cCCeE
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQD-------------------HFDLK 248 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 248 (883)
.++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+...... .|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 578999999999999986542 235667999999999999998876321111 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCC
Q 047584 249 AWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQ----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQG 324 (883)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 324 (883)
+++..+.. ...+++...+... ..++.-++|||++.......|..+...+......
T Consensus 91 iEIDAas~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEeccccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 22222111 1122222222221 1245568889999888777788887777665567
Q ss_pred cEEEEeCCCh-hHH-HhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChH-HHHHH
Q 047584 325 SKIVVTTRNE-EVA-KIMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPL-AAKTL 397 (883)
Q Consensus 325 s~ilvTTR~~-~va-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 397 (883)
.++|++|.+. .+. ...+.-..+.++.++.++..+.+.+...... . .-..+....|++.++|..- |+..+
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I---~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-I---AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7777766653 332 2222336799999999999998887653221 1 1125667889999998664 55443
No 54
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=5.7e-06 Score=93.63 Aligned_cols=192 Identities=13% Similarity=0.135 Sum_probs=112.8
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...... ++.. ..+..-...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 579999999999999996542 246789999999999999999976321100 1100 0000000111111
Q ss_pred HHhcc-----CCCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC-hhHH
Q 047584 268 SSITK-----QTVDNNDLNFLQEELKKQ----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN-EEVA 337 (883)
Q Consensus 268 ~~l~~-----~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~va 337 (883)
..-.. ........+++...+... ..+++-++|+|++...+......+...+.....+.++|++|.+ ..+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 00000 000011222222222111 1356678999999887767777777666665556677776654 2232
Q ss_pred -HhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHH
Q 047584 338 -KIMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAK 395 (883)
Q Consensus 338 -~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 395 (883)
........+++.+++.++....+.+.+-.... .--.+....|++.++|.+-.+.
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 22233468999999999998888776533221 1125667889999999885443
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.42 E-value=5.6e-06 Score=90.66 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=108.8
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCC-eEEEEEeCCCCCH-HHHHH-
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVSEDFDV-KGLTR- 264 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~-~~~~~- 264 (883)
..++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+... ...+. ..+.++++...+. .....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 56889999999999988543 234688999999999999999987321 11222 2334444321100 00000
Q ss_pred --HHHHHhccC-CCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChh-
Q 047584 265 --TILSSITKQ-TVDNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEE- 335 (883)
Q Consensus 265 --~il~~l~~~-~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~- 335 (883)
.....+... .......+.....++... .+.+-+||+||+..........+...+......+++|+||....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 000011222222222221 13455899999976654444455554444444567777775422
Q ss_pred HHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHH
Q 047584 336 VAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAK 395 (883)
Q Consensus 336 va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 395 (883)
+.. .......+.+.+++.++...++...+..... . --.+.+..|++.++|.+-.+.
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-D---YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 212 2223357889999999998888876532221 1 125678889999988765543
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=6e-06 Score=96.37 Aligned_cols=182 Identities=16% Similarity=0.164 Sum_probs=113.4
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhcc-------------------CCeE
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH-------------------FDLK 248 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 248 (883)
.++||-+..++.|.+++.... -...+.++|+.|+||||+|+.+++....... |...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 578999999999999986542 2355689999999999999999874211100 1111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEE
Q 047584 249 AWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKK-QLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKI 327 (883)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 327 (883)
+++..+....+.. .++| ...+.. -..+++-++|||++..........+...+.......++
T Consensus 91 iEidAas~~kVDd-IReL-----------------ie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKVDD-TREL-----------------LDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCHHH-HHHH-----------------HHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 2221111111111 1122 111111 12467789999999988877888887777665556666
Q ss_pred EEeC-CChhHHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHH
Q 047584 328 VVTT-RNEEVAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKT 396 (883)
Q Consensus 328 lvTT-R~~~va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 396 (883)
|++| ....+.. .......|++.+|+.++....+.+.+-... ..--.+.+..|++.++|.|--+..
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 5555 4444432 223346899999999999998887553211 111256788899999998864433
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=2.2e-07 Score=104.10 Aligned_cols=200 Identities=25% Similarity=0.321 Sum_probs=147.7
Q ss_pred eEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCC-CccEEecCCCCchhhchhhhcCcCCCCceecCCCC
Q 047584 604 RVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLY-NLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 604 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~ 682 (883)
..|++..+.+...+..+..+..+..|++.++.++++|+....+. +|+.|++++ +.+..+|..++.+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCch
Confidence 46788888875555667777899999999999999999999885 999999999 6889998889999999999999998
Q ss_pred CccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCC
Q 047584 683 SLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCST 762 (883)
Q Consensus 683 ~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 762 (883)
+..+|...+.+++|+.|.. +.+ .+..+ +..+....+|++|.++.|.
T Consensus 175 -l~~l~~~~~~~~~L~~L~l---s~N---~i~~l-------------------------~~~~~~~~~L~~l~~~~N~-- 220 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDL---SGN---KISDL-------------------------PPEIELLSALEELDLSNNS-- 220 (394)
T ss_pred -hhhhhhhhhhhhhhhheec---cCC---ccccC-------------------------chhhhhhhhhhhhhhcCCc--
Confidence 8888877666777766621 111 11111 1111233457777776531
Q ss_pred CCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeccCc
Q 047584 763 DGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKHLVVCGM 842 (883)
Q Consensus 763 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~ 842 (883)
....+..+....++..|.+.++....+|..+.. +++|+.|++++|. +..++.++.+.+|+.|+++++
T Consensus 221 ----------~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~--l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 221 ----------IIELLSSLSNLKNLSGLELSNNKLEDLPESIGN--LSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ----------ceecchhhhhcccccccccCCceeeeccchhcc--ccccceecccccc-ccccccccccCccCEEeccCc
Confidence 112344455567777777888888777888865 8889999999995 455666999999999999988
Q ss_pred ccceecCCC
Q 047584 843 SSVRRLDPE 851 (883)
Q Consensus 843 ~~l~~i~~~ 851 (883)
......+..
T Consensus 288 ~~~~~~~~~ 296 (394)
T COG4886 288 SLSNALPLI 296 (394)
T ss_pred cccccchhh
Confidence 655544443
No 58
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=4.6e-07 Score=95.35 Aligned_cols=291 Identities=16% Similarity=0.163 Sum_probs=180.0
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCC-eEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhC
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 292 (883)
..+.+.++|.|||||||++-.+.. +..-|. .+.++....-.|...+.-.+...+.-...+ -+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 358899999999999999988876 566775 555666666666666655555545433222 1223345667778
Q ss_pred CCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHHHhcCCCccEeCCCCCHH-hHHHHHHhhhcCCC-CC
Q 047584 293 RKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAKIMSLDQAYELKSLSTE-DCLSVLAQHSLETT-DF 370 (883)
Q Consensus 293 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~~~~~~~l~~L~~~-~~~~Lf~~~a~~~~-~~ 370 (883)
++|.++|+||-.+. .+.-..+.-.+..+...-.|+.|+|..... .......+++|+.. ++.++|...+.... ..
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999997322 112222333344444555688888864322 23456677777765 68888887664222 11
Q ss_pred CCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCh-------HHHHHHHhcccccCCCCCCCchhHHHHhhcCCChhH
Q 047584 371 SSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYK-------REWKGVLSSKIWELPEDRCPIIPALAVSYYYLPPIL 443 (883)
Q Consensus 371 ~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~-------~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 443 (883)
.....-.....+|.++.+|.|++|..+++..+.-... +.|...-.- ............+.+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhHH
Confidence 1223336778999999999999999999888775421 222222111 11111122467789999999999999
Q ss_pred HHHhhHhccCCCCceeCHHHHHHHHHhCCCCcCCCCCCChHHHHHHHHHHHHhcCcccccC-CCCCcEEecchHHHHHHH
Q 047584 444 KQCFAYCSLFPKDYEFDEEEIILLWCASGFLDHKESGNPNEDLGRKFFQELRSRSFFQQSA-TDASRFVMHDLINDLARW 522 (883)
Q Consensus 444 k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~~sllq~~~-~~~~~~~~Hdlv~~~a~~ 522 (883)
+-.|.-++.|...+.-. ...|.+-|-.. ..+.-.....+..+++.+++-..+ .....|+.-+-++.|+..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999998876544 23454443211 112233444567788888876544 223456666666666654
Q ss_pred Hh
Q 047584 523 AA 524 (883)
Q Consensus 523 ~~ 524 (883)
+-
T Consensus 313 eL 314 (414)
T COG3903 313 EL 314 (414)
T ss_pred HH
Confidence 43
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=98.40 E-value=3.8e-05 Score=87.66 Aligned_cols=247 Identities=16% Similarity=0.130 Sum_probs=137.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|.+..++++.+|+..... ....+.+.|+|++|+||||+|+.+++.. .|+ .+-++++...+.. ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHHH
Confidence 5799999999999999865321 1125789999999999999999999843 122 3334444432222 223332
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh----hhHhhhcccccCCCCCcEEEEeCCC-hhHH--Hhc
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY----TDWARLSLPFQAGAQGSKIVVTTRN-EEVA--KIM 340 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTTR~-~~va--~~~ 340 (883)
....... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.. .... ...
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2221100 01113678999999976432 224444444432 23345555543 2221 112
Q ss_pred CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCC-C--ChHHHHHHHhcc
Q 047584 341 SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGK-P--YKREWKGVLSSK 417 (883)
Q Consensus 341 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~-~--~~~~w~~~~~~~ 417 (883)
.....+.+.+++.++....+.+.+..... ..+ .++...|++.++|-.-.+......+... . +.+.-..+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGI-ECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 23467899999999998888776543221 111 5678899999999776554433333322 2 1222222221
Q ss_pred cccCCCCCCCchhHHHHhhc-CCChhHHHHhhHhccCCCCceeCHHHHHHHHHhCCCCcC
Q 047584 418 IWELPEDRCPIIPALAVSYY-YLPPILKQCFAYCSLFPKDYEFDEEEIILLWCASGFLDH 476 (883)
Q Consensus 418 ~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~ 476 (883)
......++.++..-+. .-+..+...+.. ..++. ..+..|+.|.+...
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1122356777665554 323333332222 12333 35778999999754
No 60
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=7.3e-08 Score=100.80 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=29.1
Q ss_pred cCCCcccEEeccCCCccccc--cccccCCCccEEecCCCCchh---hchhhhcCcCCCCceecCCCC
Q 047584 621 GDLRYLRYLNLSGTVIRSLP--ESVNKLYNLHSLLLEDCDRLK---KLCADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 621 ~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~l~~c~~l~---~lp~~i~~L~~L~~L~l~~~~ 682 (883)
.++..||...|.++.+...+ .....|++++.|||++| .+. .+-.-...|++|+.|+++.|.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc
Confidence 34445555555555544443 23445555555555552 221 222223455666666666554
No 61
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.3e-06 Score=98.78 Aligned_cols=194 Identities=17% Similarity=0.174 Sum_probs=114.7
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|-+..++.|..++.... -...+.++|++|+||||+|+.+++.....+.+....|.|.+.. .+.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 568999999999988886542 2356799999999999999999874322222222333332110 0000000000
Q ss_pred HHhccCCCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCC-ChhHHHhc-
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTR-NEEVAKIM- 340 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR-~~~va~~~- 340 (883)
..+... .....+.+.. +.+.+ .+++-++|+|+++......+..+...+........+|++|. ...+....
T Consensus 88 ~el~~~--~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 88 LEIDAA--SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred EEeccc--ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 001100 1112222222 22222 34567899999988776778888777766555555555554 33332222
Q ss_pred CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 341 SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 341 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
.....+++.+++.++....+.+.+-.... .--++.+..|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi----~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGR----EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 23467999999999999999887643221 112567888999999988544
No 62
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.37 E-value=9.1e-06 Score=94.68 Aligned_cols=201 Identities=19% Similarity=0.193 Sum_probs=120.0
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC---CeEEEEEeCCC---CCHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF---DLKAWTCVSED---FDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~---~~~~~ 261 (883)
+.++|++..+..+.+.+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 46899999999988887433 24579999999999999999998754333322 12345554321 12222
Q ss_pred HHHHH---------------HHHhccC------------------CCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh
Q 047584 262 LTRTI---------------LSSITKQ------------------TVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY 308 (883)
Q Consensus 262 ~~~~i---------------l~~l~~~------------------~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~ 308 (883)
+...+ +...+.. ..+..+ ...+..|.+.+.++++.++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 21111 1111100 001111 2356788889999999999888887766
Q ss_pred hhHhhhcccccCCCCCcEEEE--eCCChh-HHHh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHH
Q 047584 309 TDWARLSLPFQAGAQGSKIVV--TTRNEE-VAKI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIV 384 (883)
Q Consensus 309 ~~~~~l~~~l~~~~~gs~ilv--TTR~~~-va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~ 384 (883)
..|..+...+....+...+++ ||++.. +... ......+.+.+++.+|.+.++.+.+-... .... +++...|.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~ls---~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VHLA---AGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHH
Confidence 778888776666655555655 566432 1111 12234678899999999999998654211 1111 34445555
Q ss_pred HhcCCChHHHHHHHh
Q 047584 385 IKCNGLPLAAKTLGG 399 (883)
Q Consensus 385 ~~c~GlPLai~~~~~ 399 (883)
+.+..-+-|+..++.
T Consensus 383 ~ys~~gRraln~L~~ 397 (615)
T TIGR02903 383 RYTIEGRKAVNILAD 397 (615)
T ss_pred HCCCcHHHHHHHHHH
Confidence 555444555555543
No 63
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.4e-05 Score=86.55 Aligned_cols=209 Identities=16% Similarity=0.155 Sum_probs=129.6
Q ss_pred CCcccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCC-e-EEEEEeCCCCCHHH
Q 047584 184 SLVEAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-L-KAWTCVSEDFDVKG 261 (883)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~~s~~~~~~~ 261 (883)
++.|..+.+|+.+++++...|...-. .....-+.|+|.+|.|||+.++.+... +..... . .++|++-...+..+
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHH
Confidence 34555689999999999988865322 112234999999999999999999984 433322 2 78999999999999
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhC--CCcEEEEEeCCCCCChhhHhhhcccccCCC-CCcEE--EEeCCChhH
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLS--RKKFLLVLDDVWNENYTDWARLSLPFQAGA-QGSKI--VVTTRNEEV 336 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~i--lvTTR~~~v 336 (883)
++..|+.++...+.......+....+.+.+. ++.+++|||++.......-+.+...+.... ..++| |..+-+...
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~ 168 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHH
Confidence 9999999997544444556666677777764 578999999995432111022222222221 13443 333333333
Q ss_pred HHhcC-------CCccEeCCCCCHHhHHHHHHhhhcCCC-CCCCCccHHHHHHHHHHhcCC-ChHHHHH
Q 047584 337 AKIMS-------LDQAYELKSLSTEDCLSVLAQHSLETT-DFSSHKSLEEIGKEIVIKCNG-LPLAAKT 396 (883)
Q Consensus 337 a~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~-~~~~~~~l~~~~~~I~~~c~G-lPLai~~ 396 (883)
...+. ....+..+|-+.+|-..++..++-... +....+..-+.+..++..-+| .=.||..
T Consensus 169 ~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 169 LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 22221 123478899999999999988764221 112233334444444444444 3344443
No 64
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=9.4e-06 Score=91.70 Aligned_cols=199 Identities=15% Similarity=0.150 Sum_probs=113.8
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.++||-+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-... +..--+. +..+..-...+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~~-~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGIT-AQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccCC-CCCCcccHHHHHHH
Confidence 579999999999999996542 2456788999999999999999763211000 0000000 00000000111110
Q ss_pred HH-----hccCCCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEE-EEeCCChhHH
Q 047584 268 SS-----ITKQTVDNNDLNFLQEELKKQ----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKI-VVTTRNEEVA 337 (883)
Q Consensus 268 ~~-----l~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i-lvTTR~~~va 337 (883)
.. +..........+++.+.+... ..++.-++|||++.......++.+...+.......++ ++||....+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 00 000000112233333322221 1356679999999988777888887777665455554 4555544443
Q ss_pred Hh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 338 KI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
.. .+.-..+.+..++.++..+.+.+.+.... . ....+....|++.++|.|..+..+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i---~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-I---AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 32 22236799999999999988886653221 1 111455688999999999754433
No 65
>PTZ00202 tuzin; Provisional
Probab=98.35 E-value=4.3e-05 Score=81.63 Aligned_cols=165 Identities=15% Similarity=0.211 Sum_probs=100.8
Q ss_pred ccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 047584 187 EAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (883)
.+.|+||+.+.+.|...|.+.+. ...+++.|+|++|+|||||++.+..... + ...+++.. +..++++.+
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~L 329 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRSV 329 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHHH
Confidence 37899999999999999965432 2346999999999999999999996322 2 13333333 679999999
Q ss_pred HHHhccCCCCC--CChHHHHHHHHHHh-C-CCcEEEEEeCCCCCChh-hHhhhcccccCCCCCcEEEEeCCChhHHHhc-
Q 047584 267 LSSITKQTVDN--NDLNFLQEELKKQL-S-RKKFLLVLDDVWNENYT-DWARLSLPFQAGAQGSKIVVTTRNEEVAKIM- 340 (883)
Q Consensus 267 l~~l~~~~~~~--~~~~~~~~~l~~~L-~-~kr~LlVlDdv~~~~~~-~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~- 340 (883)
+.+|+.+.... +-.+.+++.+.+.- . +++.+||+-==...+.. .+.+ ...|.....-|.|++-.-.+.+-...
T Consensus 330 L~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne-~v~la~drr~ch~v~evpleslt~~~~ 408 (550)
T PTZ00202 330 VKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNE-VVALACDRRLCHVVIEVPLESLTIANT 408 (550)
T ss_pred HHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHH-HHHHHccchhheeeeeehHhhcchhcc
Confidence 99999632211 11233444444322 3 66777776532111111 1111 11233334456777655444332211
Q ss_pred --CCCccEeCCCCCHHhHHHHHHhh
Q 047584 341 --SLDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 341 --~~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
..-..|.+++++.++|..+-.+.
T Consensus 409 ~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 409 LLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cCccceeEecCCCCHHHHHHHHhhc
Confidence 11246889999999998876654
No 66
>PLN03025 replication factor C subunit; Provisional
Probab=98.31 E-value=9.3e-06 Score=87.56 Aligned_cols=181 Identities=13% Similarity=0.144 Sum_probs=105.6
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCC-eEEEEEeCCCCCHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 266 (883)
.+++|.++.++.|..++... ..+.+.++|++|+||||+|+.+++.. ....|. ..+-++.+...... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 56889998888888877543 23457799999999999999998732 122232 11222222222221 22222
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCCh-hHH-HhcCCCc
Q 047584 267 LSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNE-EVA-KIMSLDQ 344 (883)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~va-~~~~~~~ 344 (883)
+..+...... .-.++.-++|+|++..........+...+......+++|+++... .+- .......
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2221110000 002456789999998776555555555554434556777766442 221 1112235
Q ss_pred cEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHH
Q 047584 345 AYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLA 393 (883)
Q Consensus 345 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 393 (883)
.+++.++++++....+...+-...- .. -++....|++.++|-.-.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi-~i---~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKV-PY---VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHH
Confidence 7899999999998888876543221 11 145678899999987643
No 67
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.31 E-value=9.6e-07 Score=90.15 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=63.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC--CCHHHHHHHHHHHhccCCCCCCChH------HHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED--FDVKGLTRTILSSITKQTVDNNDLN------FLQEE 286 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~~~ 286 (883)
...+.|+|++|+|||||+++++++.... +|+..+|+.+.+. +++.++++.+...+-..+.+..... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999975444 8999999998777 7899999988444433333222111 11122
Q ss_pred HHHH-hCCCcEEEEEeCCC
Q 047584 287 LKKQ-LSRKKFLLVLDDVW 304 (883)
Q Consensus 287 l~~~-L~~kr~LlVlDdv~ 304 (883)
.... -++++.++++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 2222 25899999999994
No 68
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.28 E-value=2.3e-05 Score=85.11 Aligned_cols=180 Identities=13% Similarity=0.151 Sum_probs=105.3
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEe--CCCCCHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCV--SEDFDVKGLTRT 265 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~ 265 (883)
.+++|++..++.+..++... ..+.+.|+|.+|+||||+|+.+.+.. ....+. ..++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHH
Confidence 56899999999999998543 23457999999999999999998742 111121 122222 2211111 1111
Q ss_pred HHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCCh-hH-HHhcCCC
Q 047584 266 ILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNE-EV-AKIMSLD 343 (883)
Q Consensus 266 il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v-a~~~~~~ 343 (883)
.+..+....+ .....+-++++|++..........+...+......+++|+++... .+ .......
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 001235689999987655445555555555444556777766432 11 1111223
Q ss_pred ccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 344 QAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 344 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
..+++.+++.++....+...+-.... . --++.+..+++.++|.+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~-~---i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGI-E---ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 46899999999998888876643221 1 11567888999999987653
No 69
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=9e-07 Score=69.33 Aligned_cols=56 Identities=30% Similarity=0.431 Sum_probs=36.6
Q ss_pred ceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCcccccc-ccccCCCccEEecCCC
Q 047584 602 RLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDC 657 (883)
Q Consensus 602 ~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c 657 (883)
+|++|++++|.+..+|. .+.++++|++|++++|.++.+|+ .+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 56667777776666653 45667777777777777666643 5566666666666664
No 70
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.27 E-value=2.3e-06 Score=90.89 Aligned_cols=100 Identities=21% Similarity=0.249 Sum_probs=67.2
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCC--CHHHHHHHHHHHhccCCCC
Q 047584 199 EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDF--DVKGLTRTILSSITKQTVD 276 (883)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~ 276 (883)
++++++..- +.-....|+|++|+||||||+++|++.... +|+..+||.+++.. ++.++++.+...+-..+.+
T Consensus 158 rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 455666432 234568899999999999999999975444 89999999999887 7777777776433333333
Q ss_pred CCChHHHH-----HHHHHH--hCCCcEEEEEeCCC
Q 047584 277 NNDLNFLQ-----EELKKQ--LSRKKFLLVLDDVW 304 (883)
Q Consensus 277 ~~~~~~~~-----~~l~~~--L~~kr~LlVlDdv~ 304 (883)
........ -...++ -.++..+|++|++.
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 22222111 111122 26799999999993
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=3.1e-05 Score=87.28 Aligned_cols=194 Identities=18% Similarity=0.185 Sum_probs=114.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCe-EEEEEeCCCCCHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDL-KAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i 266 (883)
.+++|-+..+..|...+.... -...+.++|+.|+||||+|+.+++.......... .-+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 578999999998888775442 2357889999999999999999874211110000 000000000 001111
Q ss_pred HHHhcc-----CCCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEE-EeCCChhH
Q 047584 267 LSSITK-----QTVDNNDLNFLQEELKKQ----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIV-VTTRNEEV 336 (883)
Q Consensus 267 l~~l~~-----~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTTR~~~v 336 (883)
...... ........+++...+... ..+++-++|+|+++......+..+...+......+.+| +||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 100000 000112233333322221 23567789999999887778888877777655566655 45555555
Q ss_pred HHhc-CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 337 AKIM-SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 337 a~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
.... .....+.+.+++.++....+.+.+-.... .-..+....|++.++|.+--+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 4432 33467999999999999999877643221 111456778999999987544
No 72
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.4e-05 Score=88.68 Aligned_cols=184 Identities=18% Similarity=0.148 Sum_probs=112.8
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhh-------------------hccCCeE
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRV-------------------QDHFDLK 248 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 248 (883)
.+++|-+..++.|...+.... ....+.++|+.|+||||+|+.+++...- ...|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 568999999999999986532 2356789999999999999999863210 0112222
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEE
Q 047584 249 AWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQ-LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKI 327 (883)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 327 (883)
+++.......+++ ..++...+... ..+++-++|+|++.......++.+...+......+.+
T Consensus 91 ieidaas~~gvd~------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVEE------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHHH------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 3332222222211 11222222211 2356679999999877777777787777765556655
Q ss_pred E-EeCCChhHHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChH-HHHHHH
Q 047584 328 V-VTTRNEEVAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPL-AAKTLG 398 (883)
Q Consensus 328 l-vTTR~~~va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~ 398 (883)
| +||....+.. .......+++.+++.++....+.+.+-... ..--++....|++.++|.+- |+..+-
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg----i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN----INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5 5554444432 233347899999999998877776442211 11125567889999999774 444443
No 73
>PRK08727 hypothetical protein; Validated
Probab=98.26 E-value=2.7e-05 Score=79.71 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=89.2
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
..+.|+|..|+|||+|++++++. .......+.|+++.+ ....+. ..+.. + .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~~-l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALEA-L-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHHH-H-hcC
Confidence 46999999999999999999884 333334556776432 111111 11111 1 234
Q ss_pred EEEEEeCCCCCCh-hhHhhhcccccC--CCCCcEEEEeCCChh---------HHHhcCCCccEeCCCCCHHhHHHHHHhh
Q 047584 296 FLLVLDDVWNENY-TDWARLSLPFQA--GAQGSKIVVTTRNEE---------VAKIMSLDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 296 ~LlVlDdv~~~~~-~~~~~l~~~l~~--~~~gs~ilvTTR~~~---------va~~~~~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
-+||+||+..... ..|......+.+ ...|..||+|++... +...+.....+++++++.++-..++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 5899999964321 223322212221 124567999998521 2222233568999999999999999987
Q ss_pred hcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 364 SLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 364 a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
+.... .. --+++..-|++.++|-.-.+
T Consensus 175 a~~~~-l~---l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRG-LA---LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcC-CC---CCHHHHHHHHHhCCCCHHHH
Confidence 65322 11 12567788888888766544
No 74
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.26 E-value=1.6e-05 Score=77.84 Aligned_cols=181 Identities=22% Similarity=0.235 Sum_probs=94.3
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+|||-+.-++.+.-++..... ....+.-+.++|++|+||||||+-+.+. ....|. +++...-....++ ..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~i~k~~dl-~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPAIEKAGDL-AAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC--SCHHH-HHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchhhhhHHHH-HHHH
Confidence 6799999888876555432111 1234678899999999999999999983 444442 2222110011111 1122
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCC--------C-----------CCcEEE
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAG--------A-----------QGSKIV 328 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~-----------~gs~il 328 (883)
.. + +++-+|++|.++......-+.+..++.++ + +=+-|=
T Consensus 97 ~~---------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 97 TN---------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp HT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred Hh---------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 11 1 24457777888765443333333222211 1 112345
Q ss_pred EeCCChhHHHhcCC--CccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhh
Q 047584 329 VTTRNEEVAKIMSL--DQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLL 401 (883)
Q Consensus 329 vTTR~~~va~~~~~--~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 401 (883)
.|||...+...+.. .-..+++..+.+|-..+..+.+..-. -+-.++.+.+|+++|.|-|--+.-+-..+
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 68887555443332 23458999999999999987764322 22336789999999999996554444433
No 75
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=2.9e-05 Score=85.05 Aligned_cols=192 Identities=16% Similarity=0.096 Sum_probs=108.4
Q ss_pred cceecchhhHHHHHHHHcCCCCC----CCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSR----NDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLT 263 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 263 (883)
.+++|-+..++.|.+++...... ...-..-+.++|++|+|||++|+.+.+...-... . +..+... ...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~--~--~~~Cg~C----~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP--D--EPGCGEC----RAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC--C--CCCCCCC----HHH
Confidence 46889999999999999654210 0012456889999999999999998752110000 0 0000000 000
Q ss_pred HHHHHHhccC------CCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCC
Q 047584 264 RTILSSITKQ------TVDNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTR 332 (883)
Q Consensus 264 ~~il~~l~~~------~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR 332 (883)
+.+...-++. .......+++.. +.+.+ .+++-++|+|++..........+...+.....+..+|++|.
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 0000000000 000111222222 11211 24555888899988776666666666665555666666555
Q ss_pred C-hhHHHh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 333 N-EEVAKI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 333 ~-~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
+ ..+... .+....+.+.+++.++....+..... .. ++.+..++..++|.|.....+
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 5 344332 23346899999999999888874321 11 355788999999999765444
No 76
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=4.2e-05 Score=83.04 Aligned_cols=196 Identities=14% Similarity=0.069 Sum_probs=115.0
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEE---EEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAW---TCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---v~~s~~~~~~~~~~ 264 (883)
.+++|-+..++.|.+.+.... -...+.++|+.|+||+|+|..+.+..--......... .........-...+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 579999999999999986542 2456889999999999999888763211110000000 00000000001111
Q ss_pred HHHHHhccC---------C-----CCCCChHHHHHHHHHHhC-----CCcEEEEEeCCCCCChhhHhhhcccccCCCCCc
Q 047584 265 TILSSITKQ---------T-----VDNNDLNFLQEELKKQLS-----RKKFLLVLDDVWNENYTDWARLSLPFQAGAQGS 325 (883)
Q Consensus 265 ~il~~l~~~---------~-----~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 325 (883)
.+...-.+. . .....++++. .+.+.+. +.+-++|+||+...+......+...+.....++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 111111100 0 0112234432 3334432 556799999998888777777777776655566
Q ss_pred EEEEeCCCh-hHHHh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 326 KIVVTTRNE-EVAKI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 326 ~ilvTTR~~-~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
.+|++|... .+... ......+.+.+++.++...++....... . .+....++..++|.|+.+..+
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----P---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 666666654 33222 2334689999999999999998753211 1 122367899999999866544
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.8e-05 Score=90.58 Aligned_cols=178 Identities=15% Similarity=0.162 Sum_probs=108.9
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhc-------------------cCCeE
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQD-------------------HFDLK 248 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 248 (883)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+.+...... .|...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 579999999999999996542 245789999999999999999876321110 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCC
Q 047584 249 AWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQ----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQG 324 (883)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 324 (883)
+.+..+.. ...+.+...+... ..+++-++|+|++...+......+...+......
T Consensus 91 lEidaAs~---------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDAASN---------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEecccc---------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 12221111 1122222222110 1356678999999877655566666666554455
Q ss_pred cEEEEeCCC-hhHH-HhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHH
Q 047584 325 SKIVVTTRN-EEVA-KIMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAK 395 (883)
Q Consensus 325 s~ilvTTR~-~~va-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 395 (883)
.++|++|.+ ..+- ...+....+.+.+++.++....+.+.+-.... .-..+.+..|++.++|.+.-+.
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHH
Confidence 666666643 3222 11222356888999999998888876543221 1125678899999999985443
No 78
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.23 E-value=6.6e-08 Score=98.50 Aligned_cols=251 Identities=19% Similarity=0.181 Sum_probs=131.1
Q ss_pred cCCCceeEEeeCCCCCCC-----cCccccCCCcccEEeccCC----Cccccccc-------cccCCCccEEecCCCCchh
Q 047584 598 LKLQRLRVFSLRGYCIPE-----LPDSVGDLRYLRYLNLSGT----VIRSLPES-------VNKLYNLHSLLLEDCDRLK 661 (883)
Q Consensus 598 ~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~~----~i~~lp~~-------i~~l~~L~~L~l~~c~~l~ 661 (883)
..+..+..++|+||.+.. +-+.+.+.++|+..++++- ...++|+. +-.+++|++||||+|-.-.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 367889999999998642 4455677778999998863 22355543 3467799999999864332
Q ss_pred ----hchhhhcCcCCCCceecCCCCCccccC-ccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCC
Q 047584 662 ----KLCADMGNLIKLHHLKNSNTDSLEEMP-LGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKC 736 (883)
Q Consensus 662 ----~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~ 736 (883)
.+-.-+..+..|+||+|.+|. +...- .-++ ..|+.|. ++ ...++=+.|+ .+.+..-.--+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~--~al~~l~---~~-------kk~~~~~~Lr-v~i~~rNrlen~ 172 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLG--RALFELA---VN-------KKAASKPKLR-VFICGRNRLENG 172 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHH--HHHHHHH---HH-------hccCCCcceE-EEEeeccccccc
Confidence 233336778999999999886 33111 0011 1122221 00 1111222333 222211111111
Q ss_pred ccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCC-----CCcCCCcCCCCCe
Q 047584 737 VGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMK-----FPTWLGDSLFSNL 811 (883)
Q Consensus 737 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L 811 (883)
...++...+...+.|+.+.+..|... ..........+..+++|+.|+|..|.++. +..-+ +.+++|
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~-------~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL--~s~~~L 243 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIR-------PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL--SSWPHL 243 (382)
T ss_pred cHHHHHHHHHhccccceEEEeccccc-------CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh--cccchh
Confidence 12233444555677777777664221 11112334566677777777777776542 11111 125677
Q ss_pred eEEEEecCCCCCC----C-C-CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccccc
Q 047584 812 VTLKFENCGICTA----L-P-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 812 ~~L~L~~~~~~~~----l-~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
+.|++++|..-+. + . .-...|+|+.|.+.+|. ++.-...... .+...-|.|+.|+|++|.
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la-~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALA-ACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHH-HHHhcchhhHHhcCCccc
Confidence 7777777753221 1 1 12236777777777772 2211000000 011236777777777653
No 79
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=2.5e-05 Score=89.92 Aligned_cols=194 Identities=17% Similarity=0.138 Sum_probs=112.9
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.++||-+..++.|...+.... -...+.++|..|+||||+|+.+.+...-...+. ...+..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 578999999999999886542 234578999999999999999986421111000 00000001111111
Q ss_pred HHhcc-----CCCCCCChHHHHHHHHH----HhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEE-eCCChhHH
Q 047584 268 SSITK-----QTVDNNDLNFLQEELKK----QLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVV-TTRNEEVA 337 (883)
Q Consensus 268 ~~l~~-----~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TTR~~~va 337 (883)
..-.. ........+++...+.. -..+++-++|+|++........+.+...+.......++|+ ||....+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10000 00001122222222111 1245677999999988877778887777766555555555 44444443
Q ss_pred H-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 338 K-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 338 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
. .......+.+.+++.++....+.+..-... ....++....|++.++|.+-.+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~----i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQ----IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 223346899999999999988887542211 1112456788999999988644433
No 80
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.22 E-value=1.1e-05 Score=94.84 Aligned_cols=172 Identities=26% Similarity=0.278 Sum_probs=98.9
Q ss_pred cceecchhhHH---HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKK---EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
.+++|.+..+. .+.+.+... ....+.++|++|+||||||+.+++. ...+|. .++.+. ....+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~d--- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVKD--- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhHH---
Confidence 56889888774 455666433 3456789999999999999999973 334441 111110 00111
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHh--CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEE--eCCChh--HHH
Q 047584 265 TILSSITKQTVDNNDLNFLQEELKKQL--SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVV--TTRNEE--VAK 338 (883)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TTR~~~--va~ 338 (883)
..+......+.+ .+++.+|||||++......++.+...+. .|+.+++ ||.+.. +..
T Consensus 93 ---------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 93 ---------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred ---------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 111111121222 2467899999998766556666554332 3555555 344421 222
Q ss_pred -hcCCCccEeCCCCCHHhHHHHHHhhhcCCC---CCCCCccHHHHHHHHHHhcCCChH
Q 047584 339 -IMSLDQAYELKSLSTEDCLSVLAQHSLETT---DFSSHKSLEEIGKEIVIKCNGLPL 392 (883)
Q Consensus 339 -~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~---~~~~~~~l~~~~~~I~~~c~GlPL 392 (883)
.......+.+++|+.++...++.+.+-... ......--++....|++.+.|..-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 222346799999999999999987653100 000111125567888888888643
No 81
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.9e-07 Score=96.39 Aligned_cols=84 Identities=20% Similarity=0.154 Sum_probs=34.8
Q ss_pred CCCceeEEeeCCCCCCCcCccc--cCCCcccEEeccCCCcc--ccccccccCCCccEEecCCCCchhhchhhhcCcCCCC
Q 047584 599 KLQRLRVFSLRGYCIPELPDSV--GDLRYLRYLNLSGTVIR--SLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLH 674 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~i--~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~ 674 (883)
.|++|+.|+|+.|.+....++. ..+.+|+.|.|+.|.++ .+-.....+++|+.|+|..|+.+...-.....+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 4555555555555443222111 23445555555555444 2222233444555555554322211111122344455
Q ss_pred ceecCCCC
Q 047584 675 HLKNSNTD 682 (883)
Q Consensus 675 ~L~l~~~~ 682 (883)
.|+|++|+
T Consensus 250 ~LdLs~N~ 257 (505)
T KOG3207|consen 250 ELDLSNNN 257 (505)
T ss_pred hccccCCc
Confidence 55555544
No 82
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.22 E-value=3.4e-05 Score=79.03 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=91.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRK 294 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~k 294 (883)
...+.|+|++|+|||+|++.+++. ....-..+.++++..... ...+..+.+ . +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~----~-~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLEGM----E-Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHHHh----h-h
Confidence 357899999999999999999983 333333456666532100 001111111 1 1
Q ss_pred cEEEEEeCCCCCCh-hhHhhh-cccccCC-CCC-cEEEEeCCCh---------hHHHhcCCCccEeCCCCCHHhHHHHHH
Q 047584 295 KFLLVLDDVWNENY-TDWARL-SLPFQAG-AQG-SKIVVTTRNE---------EVAKIMSLDQAYELKSLSTEDCLSVLA 361 (883)
Q Consensus 295 r~LlVlDdv~~~~~-~~~~~l-~~~l~~~-~~g-s~ilvTTR~~---------~va~~~~~~~~~~l~~L~~~~~~~Lf~ 361 (883)
--+|++||+..... ..|... ...+... ..| .++|+||+.. ++...+.....++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 24789999965321 334332 1222211 123 3688988753 233344556789999999999999998
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHH
Q 047584 362 QHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLG 398 (883)
Q Consensus 362 ~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 398 (883)
+++.... .. --+++..-|++.+.|..-++..+-
T Consensus 178 ~~a~~~~-~~---l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 178 LRARLRG-FE---LPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHcC-CC---CCHHHHHHHHHhhcCCHHHHHHHH
Confidence 7664321 11 126778889999988766554443
No 83
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.21 E-value=5.8e-05 Score=83.26 Aligned_cols=183 Identities=18% Similarity=0.180 Sum_probs=109.6
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhh--------------------ccCCe
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ--------------------DHFDL 247 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~ 247 (883)
.+++|.+..++.+.+++.... -...+.++|++|+||||+|+.+.....-. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 568999999999999986542 24578899999999999999887632100 12221
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEE
Q 047584 248 KAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKI 327 (883)
Q Consensus 248 ~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 327 (883)
+++..+...... -.+++...+... -..+++-++|+|++..........+...+......+.+
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred -EEeeccccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 222221111111 111222221110 01234558889998666555566666666554456666
Q ss_pred EEeCCChh-HHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 328 VVTTRNEE-VAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 328 lvTTR~~~-va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
|++|.+.. +.. .......+++.+++.++....+...+-.... .. -++.+..|++.++|.|..+...
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i---~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KI---EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCChHHHHHH
Confidence 66665433 222 2223357889999999988888876532211 11 1467888999999998755443
No 84
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.21 E-value=4.8e-05 Score=75.31 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=63.9
Q ss_pred CCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCCh-hHHHh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCC
Q 047584 293 RKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNE-EVAKI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDF 370 (883)
Q Consensus 293 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 370 (883)
+.+-++|+||+.......++.+...+......+.+|++|++. .+... ......+.+.+++.++....+.+. + -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 456689999997776666777777776655566677766543 22221 223468999999999998888876 1 1
Q ss_pred CCCccHHHHHHHHHHhcCCChH
Q 047584 371 SSHKSLEEIGKEIVIKCNGLPL 392 (883)
Q Consensus 371 ~~~~~l~~~~~~I~~~c~GlPL 392 (883)
. ++.+..|++.++|.|.
T Consensus 170 --~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 --S---EEAAELLLALAGGSPG 186 (188)
T ss_pred --C---HHHHHHHHHHcCCCcc
Confidence 1 4668899999999885
No 85
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3.6e-05 Score=88.45 Aligned_cols=196 Identities=16% Similarity=0.165 Sum_probs=112.4
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC--CeEEEEEeCCCCCHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--DLKAWTCVSEDFDVKGLTRT 265 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~ 265 (883)
.++||-+..++.|.+++.... -...+.++|+.|+||||+|+.+.+...-.... ...-. ..+..-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 568999998899999886542 24667899999999999999996531110000 00000 00011111111
Q ss_pred HHHHhcc-----CCCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEe-CCChh
Q 047584 266 ILSSITK-----QTVDNNDLNFLQEELKKQ----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVT-TRNEE 335 (883)
Q Consensus 266 il~~l~~-----~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT-TR~~~ 335 (883)
|...-.. ........+++.+.+... ..++.-++|||+++......+..+...+.......++|++ |....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 1000000 000111223332222211 1244568899999988888888887777665555565554 44444
Q ss_pred HH-HhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHH
Q 047584 336 VA-KIMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKT 396 (883)
Q Consensus 336 va-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 396 (883)
+- ........+++++++.++....+.+.+..... .-..+....|++.++|.+-.+..
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi----~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV----PAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 33 22334478999999999998888876532211 11146678899999998854443
No 86
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=3.9e-05 Score=87.05 Aligned_cols=195 Identities=15% Similarity=0.175 Sum_probs=110.8
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|.+..++.+.+++.... ..+.+.++|+.|+||||+|+.+.+... |.-|... ..+..-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCC-CCCcccHHHHHHH
Confidence 578999999999999985542 235788999999999999999986321 1111110 0111111111111
Q ss_pred HHhccC-----CCCCCChHHHHHH---HHHH-hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeC-CChhHH
Q 047584 268 SSITKQ-----TVDNNDLNFLQEE---LKKQ-LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTT-RNEEVA 337 (883)
Q Consensus 268 ~~l~~~-----~~~~~~~~~~~~~---l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~~va 337 (883)
...... .......+++... +... ..+++=++|+|++.......+..+...+........+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 111000 0001112222211 1110 12334469999998776677777777666554555555544 444443
Q ss_pred H-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChH-HHHHHH
Q 047584 338 K-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPL-AAKTLG 398 (883)
Q Consensus 338 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~ 398 (883)
. .......+++.+++.++....+...+-.... .. -.+.+..|++.++|.+- |+..+-
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~I---s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KI---EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 2 2333468999999999998888875532211 11 14567889999999764 444443
No 87
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=4.5e-05 Score=85.19 Aligned_cols=181 Identities=17% Similarity=0.182 Sum_probs=112.9
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchh------------------h-hccCCeE
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKR------------------V-QDHFDLK 248 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------------------~-~~~F~~~ 248 (883)
.++||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++... + .+.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 578999999988888885442 235788999999999999998875210 0 0111223
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEE
Q 047584 249 AWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIV 328 (883)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 328 (883)
+.++.+....++++ +++++..... -..+++-++|+|++........+.+...+......+++|
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 33433332222221 2222221100 012456689999998776667777777777666667666
Q ss_pred EeC-CChhHHHh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 329 VTT-RNEEVAKI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 329 vTT-R~~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
++| ....+... ......+.+.+++.++....+.+.+..... .--++.+..|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 555 44444432 234467999999999998888876643221 112566788999999988543
No 88
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.19 E-value=4.1e-07 Score=90.33 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=49.8
Q ss_pred hcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccc----c--------------------ccccCCCccEE
Q 047584 597 LLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLP----E--------------------SVNKLYNLHSL 652 (883)
Q Consensus 597 l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp----~--------------------~i~~l~~L~~L 652 (883)
+.-+++|..+.++.|.-..+-.....-+.|+++..+++.+...| . .+-..+.|.+|
T Consensus 210 l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred hHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence 33567778888888764444332223356777877776554322 1 11224556666
Q ss_pred ecCCCCchhhchhhhcCcCCCCceecCCCC
Q 047584 653 LLEDCDRLKKLCADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 653 ~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~ 682 (883)
||++ |.++.+-.++.-+|+++.|+++.|.
T Consensus 290 DLS~-N~I~~iDESvKL~Pkir~L~lS~N~ 318 (490)
T KOG1259|consen 290 DLSG-NLITQIDESVKLAPKLRRLILSQNR 318 (490)
T ss_pred cccc-cchhhhhhhhhhccceeEEeccccc
Confidence 6666 4566666666666666666666665
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.6e-05 Score=87.53 Aligned_cols=186 Identities=20% Similarity=0.187 Sum_probs=107.6
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhcc-------------------CCeE
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH-------------------FDLK 248 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 248 (883)
.++||.+.....|...+..+. -...+.++|++|+||||+|+.+++....... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 579999988888888875442 2356889999999999999999864211100 0011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEE
Q 047584 249 AWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKK-QLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKI 327 (883)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 327 (883)
+.+..+....+..+ +.+... ... -..+++-++|+|+++.......+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~~~-----------------~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDA-----------------VGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHH-----------------HhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22222211111111 111111 110 12345679999999765545556666665544334444
Q ss_pred EE-eCCChhHHHh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCC-ChHHHHHHHhh
Q 047584 328 VV-TTRNEEVAKI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNG-LPLAAKTLGGL 400 (883)
Q Consensus 328 lv-TTR~~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~~~ 400 (883)
|+ ||....+... ......+.+.+++.++....+.+.+..... .--+++...|++.++| ++.|+..+-.+
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44 4433444332 233468899999999988888876642211 1114567788888865 46666666543
No 90
>PLN03150 hypothetical protein; Provisional
Probab=98.19 E-value=1.8e-06 Score=101.38 Aligned_cols=93 Identities=23% Similarity=0.308 Sum_probs=81.2
Q ss_pred ceeEEeeCCCCCC-CcCccccCCCcccEEeccCCCcc-ccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecC
Q 047584 602 RLRVFSLRGYCIP-ELPDSVGDLRYLRYLNLSGTVIR-SLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNS 679 (883)
Q Consensus 602 ~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~ 679 (883)
.++.|+|++|.+. .+|..+++|.+|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999986 57888999999999999999997 789899999999999999976666889999999999999999
Q ss_pred CCCCccccCccCCCC
Q 047584 680 NTDSLEEMPLGIVRL 694 (883)
Q Consensus 680 ~~~~~~~~p~~i~~L 694 (883)
+|.....+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 998556788777653
No 91
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.5e-05 Score=86.15 Aligned_cols=191 Identities=15% Similarity=0.073 Sum_probs=112.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|-+..+..|..++.... -...+.++|+.|+||||+|+.+++...-. .... ...+..... ...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~s----C~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTS----CLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcH----HHHHH
Confidence 578999999999999886542 13468999999999999999998732111 1000 000111111 11111
Q ss_pred HHhccC--------CCCCCChHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEE-EeCCChhHH
Q 047584 268 SSITKQ--------TVDNNDLNFLQEELKKQ-LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIV-VTTRNEEVA 337 (883)
Q Consensus 268 ~~l~~~--------~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTTR~~~va 337 (883)
...... ....+++.++.+.+... ..++.-++|+|++.......+..+...+........+| .||....+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 111100 00111122222222211 24566799999999888788888877775544455544 455544443
Q ss_pred H-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 338 K-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 338 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
. .......|.+.+++.++....+.+.+-... . .--++....|++.++|.+--+
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-i---~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-V---QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCChHHHH
Confidence 2 223346799999999999888877653221 1 112567889999999998533
No 92
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=3e-06 Score=99.62 Aligned_cols=99 Identities=26% Similarity=0.368 Sum_probs=84.6
Q ss_pred CCCCchhhhcCCCceeEEeeCCCCCC-CcCccccCCCcccEEeccCCCcc-ccccccccCCCccEEecCCCCchhhchhh
Q 047584 589 LAPSILPKLLKLQRLRVFSLRGYCIP-ELPDSVGDLRYLRYLNLSGTVIR-SLPESVNKLYNLHSLLLEDCDRLKKLCAD 666 (883)
Q Consensus 589 ~~~~~~~~l~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~ 666 (883)
+.+.++..+.++++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|..+++|++|++|+|++|.....+|..
T Consensus 430 L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 55667778889999999999999987 68989999999999999999998 78999999999999999998776789988
Q ss_pred hcCc-CCCCceecCCCCCcccc
Q 047584 667 MGNL-IKLHHLKNSNTDSLEEM 687 (883)
Q Consensus 667 i~~L-~~L~~L~l~~~~~~~~~ 687 (883)
+..+ .++..+++.+|..+...
T Consensus 510 l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 510 LGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred HhhccccCceEEecCCccccCC
Confidence 7764 56778888888644433
No 93
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=9.3e-05 Score=79.94 Aligned_cols=195 Identities=14% Similarity=0.142 Sum_probs=116.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhc--cCCeEEEEEeCCCCCHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQD--HFDLKAWTCVSEDFDVKGLTRT 265 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~~~~~~~~~ 265 (883)
..++|-+...+.+...+.... ....+.|+|+.|+||||+|..+.+..--.. .+... .....+..-...+.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 679999999999999996542 245689999999999999998886321100 01111 00011111112233
Q ss_pred HHHHhc-------cC--C-----CCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcE
Q 047584 266 ILSSIT-------KQ--T-----VDNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSK 326 (883)
Q Consensus 266 il~~l~-------~~--~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 326 (883)
+...-. .+ . .....++++. .+.+++ .+++-++|+|++...+......+...+........
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 322211 00 0 0112234433 344444 35667999999988877777777666665444455
Q ss_pred E-EEeCCChhHHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 327 I-VVTTRNEEVAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 327 i-lvTTR~~~va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
+ ++|++...+.. ..+....+++.+++.++...++.+..... . -.++.+..|++.++|.|..+..+
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-----~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-----G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-----C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4 45544433322 22233689999999999999998743211 1 11445778999999999866544
No 94
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=4.1e-05 Score=86.97 Aligned_cols=182 Identities=14% Similarity=0.120 Sum_probs=109.6
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhh-------------------ccCCeE
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ-------------------DHFDLK 248 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 248 (883)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-. +.|...
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 578999999999999996542 23567899999999999999998632111 111112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEE
Q 047584 249 AWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIV 328 (883)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 328 (883)
+.+..+....++++ ++++..+.-. -..++.-++|+|++..........+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 22322222222221 1222211100 013566789999998887777777777776655566666
Q ss_pred EeC-CChhHHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHH
Q 047584 329 VTT-RNEEVAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAK 395 (883)
Q Consensus 329 vTT-R~~~va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 395 (883)
++| ....+.. .......+++.+++.++....+...+-.... .-..+....|++.++|.+-.+.
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi----~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV----EFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHH
Confidence 554 4333332 2223367889999999877766555432111 1114557789999999886443
No 95
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.14 E-value=4.5e-05 Score=78.05 Aligned_cols=152 Identities=18% Similarity=0.152 Sum_probs=87.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRK 294 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~k 294 (883)
...+.|+|..|+|||+||+.+++... ... ....+++..... .. + ... ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~------------------~~~-~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F------------------DFD-PE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H------------------hhc-cc
Confidence 45789999999999999999998421 222 234455443211 00 0 011 23
Q ss_pred cEEEEEeCCCCCChhhHhhhcccccCC-CCCc-EEEEeCCChhHHH--------hcCCCccEeCCCCCHHhHHHHHHhhh
Q 047584 295 KFLLVLDDVWNENYTDWARLSLPFQAG-AQGS-KIVVTTRNEEVAK--------IMSLDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 295 r~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTTR~~~va~--------~~~~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
.-+||+||+...+...-..+...+... ..+. .+|+|++...... .+.....+++.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 347889999654333323333333221 1333 4667766533221 22224678999999988777776543
Q ss_pred cCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhh
Q 047584 365 LETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLL 401 (883)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 401 (883)
-... .. --+++...|++.+.|.+..+..+-..+
T Consensus 171 ~~~~-v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERG-LQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcC-CC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2211 11 125678888899999998887665544
No 96
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.11 E-value=4.2e-05 Score=78.52 Aligned_cols=157 Identities=18% Similarity=0.245 Sum_probs=99.1
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCC
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSR 293 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~ 293 (883)
...-+.+||++|.||||||+.+.+..+-.. ..||..|....-..-.++|+++-.. ...+.+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~k 221 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLTK 221 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhhc
Confidence 467788999999999999999997543222 5577777655444445555554321 123457
Q ss_pred CcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEE--eCCChhH---HHhcCCCccEeCCCCCHHhHHHHHHhhhc--C
Q 047584 294 KKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVV--TTRNEEV---AKIMSLDQAYELKSLSTEDCLSVLAQHSL--E 366 (883)
Q Consensus 294 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TTR~~~v---a~~~~~~~~~~l~~L~~~~~~~Lf~~~a~--~ 366 (883)
+|.+|++|.|..-+..+-+ ..||...+|+-++| ||.+... +.....-.++.|++|..++-..++.+..- +
T Consensus 222 rkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred ceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhc
Confidence 8999999999654322222 34566677887776 6766432 22233446899999999999999887432 2
Q ss_pred CCC----CCCCc---cHHHHHHHHHHhcCCChH
Q 047584 367 TTD----FSSHK---SLEEIGKEIVIKCNGLPL 392 (883)
Q Consensus 367 ~~~----~~~~~---~l~~~~~~I~~~c~GlPL 392 (883)
+.. ..+.+ -...+..-++..|+|-.-
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 211 11111 123456667778888653
No 97
>PRK09087 hypothetical protein; Validated
Probab=98.11 E-value=2.4e-05 Score=79.26 Aligned_cols=141 Identities=14% Similarity=0.134 Sum_probs=87.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRK 294 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~k 294 (883)
.+.+.|+|+.|+|||+|++.++.... ..+++.. .+..+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh---------------------hc-
Confidence 36789999999999999998886321 1233321 1111111111 11
Q ss_pred cEEEEEeCCCCCC--hhhHhhhcccccCCCCCcEEEEeCCC---------hhHHHhcCCCccEeCCCCCHHhHHHHHHhh
Q 047584 295 KFLLVLDDVWNEN--YTDWARLSLPFQAGAQGSKIVVTTRN---------EEVAKIMSLDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 295 r~LlVlDdv~~~~--~~~~~~l~~~l~~~~~gs~ilvTTR~---------~~va~~~~~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
-+|++||+.... ...+-.+...+. ..|..||+|++. .++...+.....+++++++.++-.+++.++
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 278889995431 222222322222 236678888874 334444456678999999999999999988
Q ss_pred hcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 364 SLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 364 a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
+-... ...+ +++..-|++.+.|..-++..+
T Consensus 166 ~~~~~-~~l~---~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 166 FADRQ-LYVD---PHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHcC-CCCC---HHHHHHHHHHhhhhHHHHHHH
Confidence 74321 1112 577888888888887766543
No 98
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.1e-07 Score=94.42 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=61.4
Q ss_pred CceeEEeeCCCCCCC--cCccccCCCcccEEeccCCCcc-ccccccccCCCccEEecCCCCchhhch--hhhcCcCCCCc
Q 047584 601 QRLRVFSLRGYCIPE--LPDSVGDLRYLRYLNLSGTVIR-SLPESVNKLYNLHSLLLEDCDRLKKLC--ADMGNLIKLHH 675 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~--lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp--~~i~~L~~L~~ 675 (883)
..|++|||+...|+. +-..+..|.+|+.|.|.++.+. .+-..|.+-.+|+.||++.|+.+.+.. --+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358888999888752 3344577888888999888776 345667778889999999888776543 23678888888
Q ss_pred eecCCCC
Q 047584 676 LKNSNTD 682 (883)
Q Consensus 676 L~l~~~~ 682 (883)
|+++.|.
T Consensus 265 LNlsWc~ 271 (419)
T KOG2120|consen 265 LNLSWCF 271 (419)
T ss_pred cCchHhh
Confidence 8888876
No 99
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=4e-07 Score=102.19 Aligned_cols=103 Identities=25% Similarity=0.320 Sum_probs=74.7
Q ss_pred hhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCC
Q 047584 594 LPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKL 673 (883)
Q Consensus 594 ~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L 673 (883)
...+..+++|.+|++.+|.|..+...+..+.+|++|++++|.|+++ ..+..+..|+.|++++ |.+..++ .+..+++|
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~L 164 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG-NLISDIS-GLESLKSL 164 (414)
T ss_pred hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc-Ccchhcc-CCccchhh
Confidence 3345678888888898888888866578888888999988888887 3467777788888888 4666653 45668888
Q ss_pred CceecCCCCCccccCcc-CCCCCCCCcc
Q 047584 674 HHLKNSNTDSLEEMPLG-IVRLTCLQTL 700 (883)
Q Consensus 674 ~~L~l~~~~~~~~~p~~-i~~L~~L~~L 700 (883)
+.+++++|. +..+... ...+.+|..+
T Consensus 165 ~~l~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 165 KLLDLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred hcccCCcch-hhhhhhhhhhhccchHHH
Confidence 888888887 5555432 3445555544
No 100
>PRK05642 DNA replication initiation factor; Validated
Probab=98.10 E-value=7.2e-05 Score=76.50 Aligned_cols=152 Identities=21% Similarity=0.295 Sum_probs=91.7
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
..+.|+|..|+|||.|++++++. ....-..++|++..+ +... .. .+.+.+.+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhCC
Confidence 67899999999999999999873 332223566776432 2111 01 1222222222
Q ss_pred EEEEEeCCCCCC-hhhHhh-hcccccC-CCCCcEEEEeCCChh---------HHHhcCCCccEeCCCCCHHhHHHHHHhh
Q 047584 296 FLLVLDDVWNEN-YTDWAR-LSLPFQA-GAQGSKIVVTTRNEE---------VAKIMSLDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 296 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTTR~~~---------va~~~~~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
+||+||+.... ...|.. +...+.. ...|..+|+|++... +...+.....++++++++++-..++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 67899996432 134443 3333322 124667888887533 1222234467899999999999999976
Q ss_pred hcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHH
Q 047584 364 SLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLG 398 (883)
Q Consensus 364 a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 398 (883)
+.... ...+ +++..-|++.+.|..-.+..+-
T Consensus 179 a~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 179 ASRRG-LHLT---DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 64321 1112 5778889999998876554443
No 101
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.09 E-value=3e-06 Score=66.36 Aligned_cols=58 Identities=31% Similarity=0.418 Sum_probs=51.2
Q ss_pred CcccEEeccCCCcccccc-ccccCCCccEEecCCCCchhhchh-hhcCcCCCCceecCCCC
Q 047584 624 RYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 624 ~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~ 682 (883)
++|++|++++|+++.+|+ .+.++++|++|++++ +.+..+|. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 778999999999998 56777765 68999999999999986
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=5.1e-05 Score=84.24 Aligned_cols=197 Identities=16% Similarity=0.126 Sum_probs=111.3
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEE-eCCCCCHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTC-VSEDFDVKGLTRTI 266 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i 266 (883)
.+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-...++...|.. ....+..=...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 578999999999999886432 234588899999999999999886321111111111110 00011000111111
Q ss_pred HHHhccC-----CCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeC-CChh
Q 047584 267 LSSITKQ-----TVDNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTT-RNEE 335 (883)
Q Consensus 267 l~~l~~~-----~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~~ 335 (883)
....... .......+++.+ +.+.+ .+++-++|+|++.......+..+...+......+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1110000 001112333332 22222 2455688999998776667888877777665666666555 4444
Q ss_pred HHHh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 336 VAKI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 336 va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
+... ......+++.+++.++....+...+-.... .--++.+..|++.++|.+--+
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 4332 122357889999999988877765532111 112567889999999987543
No 103
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=8e-05 Score=85.87 Aligned_cols=196 Identities=13% Similarity=0.149 Sum_probs=113.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCC--eEEEEEeCCCCCHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD--LKAWTCVSEDFDVKGLTRT 265 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~ 265 (883)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+......... ...+-.+. .-.-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg----~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG----VGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc----ccHHHHH
Confidence 579999999999999996542 245688999999999999999987321111100 00000000 0011111
Q ss_pred HHHHhccC-----CCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeC-CChh
Q 047584 266 ILSSITKQ-----TVDNNDLNFLQEELKKQ----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTT-RNEE 335 (883)
Q Consensus 266 il~~l~~~-----~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~~ 335 (883)
|...-+.. .......+++...+... ..+++-++|+|++........+.+...+......+++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 11111100 00112233332222111 12455678999998776666777777776655666666544 4433
Q ss_pred HHHh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHH
Q 047584 336 VAKI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKT 396 (883)
Q Consensus 336 va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 396 (883)
+... ......+.+..++.++....+.+.+-.... .--.+.+..|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3322 223467999999999998888876532211 11146778899999999865543
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=8e-05 Score=85.20 Aligned_cols=180 Identities=14% Similarity=0.156 Sum_probs=107.0
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhh-------------------ccCCeE
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ-------------------DHFDLK 248 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 248 (883)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+.+..... +.|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 578999999999999986542 23567899999999999999997632110 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEE
Q 047584 249 AWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIV 328 (883)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 328 (883)
+++..+....++. .++++..+... -..+++-++|+|++..........+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 2222221111111 11222111100 013566799999998776666777776666655556665
Q ss_pred EeC-CChhHHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHH
Q 047584 329 VTT-RNEEVAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLA 393 (883)
Q Consensus 329 vTT-R~~~va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 393 (883)
++| ..+.+.. .......+++++++.++....+.+.+-... . .--++.+..|++.++|.+--
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i---~~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-I---PFDATALQLLARAAAGSMRD 216 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHH
Confidence 555 3333321 112235789999999998888776543211 1 11245678899999998753
No 105
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.02 E-value=2.1e-05 Score=84.26 Aligned_cols=90 Identities=18% Similarity=0.219 Sum_probs=63.7
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC--CCHHHHHHHHHHHhccCCCCCCChHH------HHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED--FDVKGLTRTILSSITKQTVDNNDLNF------LQEE 286 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~il~~l~~~~~~~~~~~~------~~~~ 286 (883)
-..+.|+|++|+|||||++.+++.... .+|+..+||.+.+. .++.++++.+...+-..+.+...... +.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 467999999999999999999986433 37999999999866 78899999886655444333222111 1111
Q ss_pred HHHH-hCCCcEEEEEeCCCC
Q 047584 287 LKKQ-LSRKKFLLVLDDVWN 305 (883)
Q Consensus 287 l~~~-L~~kr~LlVlDdv~~ 305 (883)
.... -++++.+|++|.+..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 1122 368999999999943
No 106
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.99 E-value=2.8e-05 Score=84.68 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=77.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
..+++.+...+.++..|... +.|.++|++|+|||++|+.+++.......|+.+.||.+++.++..++...+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 46888999999999999643 468889999999999999999854444567888999999988877665422
Q ss_pred HHhccCCCCCC-ChHHHHHHHHHHhC--CCcEEEEEeCCCCCChhh-Hhhhcc
Q 047584 268 SSITKQTVDNN-DLNFLQEELKKQLS--RKKFLLVLDDVWNENYTD-WARLSL 316 (883)
Q Consensus 268 ~~l~~~~~~~~-~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~-~~~l~~ 316 (883)
.+....-. ......+.+.+... +++++||+|++...+.+. +..+..
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~ 295 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMM 295 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhh
Confidence 11111100 00112222333222 468999999997765443 344433
No 107
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00023 Score=83.03 Aligned_cols=194 Identities=14% Similarity=0.153 Sum_probs=112.7
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+.+......... ....+..-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 578999999999988886442 235678999999999999999986321100000 001111112223332
Q ss_pred HHhccC-----CCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC-hhH
Q 047584 268 SSITKQ-----TVDNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN-EEV 336 (883)
Q Consensus 268 ~~l~~~-----~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~v 336 (883)
...+.. .......+++.. +.+.+ .+++-++|+|++........+.+...+......+.+|++|.. ..+
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 221110 001122233222 22221 245678999999776666677776666655556666665543 333
Q ss_pred HH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 337 AK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 337 a~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
.. .......+.+..++.++....+...+..... . --.+.+..|++.++|.+..+...
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~---i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-N---LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 32 2223457889999999988888776543221 1 11467889999999998655433
No 108
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.99 E-value=6.3e-05 Score=82.80 Aligned_cols=179 Identities=17% Similarity=0.182 Sum_probs=98.8
Q ss_pred cceecchhhHHHHHHHHcCCCCC-------CCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSR-------NDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++.|++..+++|.+.+...-.. +-...+-+.++|++|+|||++|+++++. ....| +.+.. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~----~ 190 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG----S 190 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----H
Confidence 68999999999998877432100 1122456899999999999999999983 33333 22211 1
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hh---hHhhhccccc--CCCCC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN-----------YT---DWARLSLPFQ--AGAQG 324 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~--~~~~g 324 (883)
.+...... .....+...+...-...+.+|++||++... .. .+..+...+. ....+
T Consensus 191 ~l~~~~~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 191 ELVRKYIG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHHhhh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 11111100 011111122222223467899999985421 11 1222221121 11245
Q ss_pred cEEEEeCCChhHH-Hhc----CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh
Q 047584 325 SKIVVTTRNEEVA-KIM----SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 325 s~ilvTTR~~~va-~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 391 (883)
.+||.||...... ... .....+.+...+.++..++|..++....-. ..-. ...+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 6788888754321 111 123568899999999999999876543211 1112 456777777754
No 109
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.8e-07 Score=92.92 Aligned_cols=58 Identities=24% Similarity=0.232 Sum_probs=39.8
Q ss_pred cccEEeccCCCcc--ccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCC
Q 047584 625 YLRYLNLSGTVIR--SLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 625 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~ 682 (883)
.|+||||+++.|+ .+---++.+.+|+.|.+.+...-..+-..|.+-.+|+.|++++|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence 4888888888776 444456677777777777743333444556777778888777776
No 110
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00026 Score=78.28 Aligned_cols=180 Identities=14% Similarity=0.197 Sum_probs=104.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhh------hccCCeEE-EEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRV------QDHFDLKA-WTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~~-wv~~s~~~~~~ 260 (883)
.+++|.+...+.+.+.+.... -.+.+.++|++|+||||+|+.+.+.... ...|...+ -+......+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 568999999999999996542 2468889999999999999999763211 01121111 11111111111
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeC-CChhHHH-
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTT-RNEEVAK- 338 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~~va~- 338 (883)
..+++++++... -..+++-++|+|++.......+..+...+......+.+|++| ....+..
T Consensus 92 -~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 -DIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred -HHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 111222211100 012345589999997665555666655554433445555544 3333322
Q ss_pred hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHH
Q 047584 339 IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLA 393 (883)
Q Consensus 339 ~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 393 (883)
.......+++.+++.++....+...+....- .. -++.+..|++.++|.+-.
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i---~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KF---EDDALHIIAQKADGALRD 205 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHhCCCCHHH
Confidence 2233457899999999988888876543221 11 146788889999986653
No 111
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00026 Score=81.25 Aligned_cols=197 Identities=14% Similarity=0.106 Sum_probs=112.9
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-....+ +-.++.. ...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhh
Confidence 578999999999999996542 235678999999999999999986321100000 0000000 0011110
Q ss_pred HH-------hccCCCCCCChHHH---HHHHHHH-hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEE-eCCChh
Q 047584 268 SS-------ITKQTVDNNDLNFL---QEELKKQ-LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVV-TTRNEE 335 (883)
Q Consensus 268 ~~-------l~~~~~~~~~~~~~---~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TTR~~~ 335 (883)
.. +..........+++ ...+... ..+++-++|+|++........+.+...+........+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 00000001112222 2222111 134566889999988877778888777776555665554 544444
Q ss_pred HHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChH-HHHHHHhh
Q 047584 336 VAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPL-AAKTLGGL 400 (883)
Q Consensus 336 va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~~ 400 (883)
+-. .......+++.+++.++..+.+...+-.... .--.+.+..|++.++|.+- |+..+-.+
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi----~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV----VVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 443 2334568999999999988888765432211 1114567788999999874 44444433
No 112
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=0.00026 Score=75.68 Aligned_cols=200 Identities=16% Similarity=0.148 Sum_probs=119.4
Q ss_pred ccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 047584 187 EAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (883)
+..++||+.|++.+.+++...-. ....+-+.|.|-+|.|||.+...++.+..-...=..++++++..-.....++..|
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 46799999999999999976532 2345678999999999999999999754322211355777776655677788888
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHhCCC--cEEEEEeCCCCCChhhHhhhccccc-CCCCCcEEEEeCCChh-------H
Q 047584 267 LSSITKQTVDNNDLNFLQEELKKQLSRK--KFLLVLDDVWNENYTDWARLSLPFQ-AGAQGSKIVVTTRNEE-------V 336 (883)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilvTTR~~~-------v 336 (883)
...+...........+.+..+.++.... .+|+|+|.+..-....-..+...|. +.-+++|+|+.---.. +
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 7777322222222244556666666543 6999999884321111122222222 2235666654432111 1
Q ss_pred HHhc----CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh
Q 047584 337 AKIM----SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 337 a~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 391 (883)
.... .....+..+|.+.++..++|..+.-.... ...+...++.+++||.|.-
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t---~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST---SIFLNAAIELCARKVAAPS 362 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc---cccchHHHHHHHHHhccCc
Confidence 1111 12357888999999999999988643221 1222234455555555433
No 113
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=7.1e-06 Score=58.75 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=20.8
Q ss_pred ceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccc
Q 047584 602 RLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLP 640 (883)
Q Consensus 602 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp 640 (883)
+|++|++++|.++.+|..+++|++|++|++++|.|+++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455555555555555555555555555555555555443
No 114
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=1.9e-05 Score=85.05 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=26.8
Q ss_pred CCCceeEEeeCCCCCCCcCccccCCCcccEEeccCC-CccccccccccCCCccEEecCCCCchhhch
Q 047584 599 KLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGT-VIRSLPESVNKLYNLHSLLLEDCDRLKKLC 664 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp 664 (883)
.+++++.|++++|.++.+|. + ..+|+.|.+++| .++.+|..+. .+|++|++++|..+..+|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc
Confidence 34555556666555555541 1 123445555442 3333443321 244444444443343333
No 115
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.95 E-value=0.00015 Score=73.17 Aligned_cols=161 Identities=19% Similarity=0.240 Sum_probs=94.7
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccC-C-eEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF-D-LKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 292 (883)
...+.|+|..|+|||.|.+++++. ..... + .+++++ ..+....+...+... .. ..+++.+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~-----~~----~~~~~~~~ 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRDG-----EI----EEFKDRLR 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHTT-----SH----HHHHHHHC
T ss_pred CCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHcc-----cc----hhhhhhhh
Confidence 455899999999999999999984 33322 2 355554 455666666555431 12 23444444
Q ss_pred CCcEEEEEeCCCCCChh-hHhhhcc-cccC-CCCCcEEEEeCCCh---------hHHHhcCCCccEeCCCCCHHhHHHHH
Q 047584 293 RKKFLLVLDDVWNENYT-DWARLSL-PFQA-GAQGSKIVVTTRNE---------EVAKIMSLDQAYELKSLSTEDCLSVL 360 (883)
Q Consensus 293 ~kr~LlVlDdv~~~~~~-~~~~l~~-~l~~-~~~gs~ilvTTR~~---------~va~~~~~~~~~~l~~L~~~~~~~Lf 360 (883)
.-=+|++||++..... .|..... .+.. ...|.+||+|++.. .+...+..+-.++++++++++...++
T Consensus 97 -~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 -SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp -TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred -cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 3457889999664332 2333211 1111 12466899999652 23333455678999999999999999
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 361 AQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 361 ~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
.+++-...- . --++++.-|++.+.+..-.+..+
T Consensus 176 ~~~a~~~~~-~---l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 176 QKKAKERGI-E---LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHhCC-C---CcHHHHHHHHHhhcCCHHHHHHH
Confidence 988754321 1 22567778888887766555433
No 116
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.95 E-value=2.9e-07 Score=95.89 Aligned_cols=263 Identities=18% Similarity=0.210 Sum_probs=128.3
Q ss_pred CCCCchhhhc-CCCceeEEeeCCCC-CCCc-Cc-cccCCCcccEEeccCCC-ccc--cccccccCCCccEEecCCCCchh
Q 047584 589 LAPSILPKLL-KLQRLRVFSLRGYC-IPEL-PD-SVGDLRYLRYLNLSGTV-IRS--LPESVNKLYNLHSLLLEDCDRLK 661 (883)
Q Consensus 589 ~~~~~~~~l~-~l~~Lr~L~L~~~~-~~~l-p~-~i~~l~~L~~L~L~~~~-i~~--lp~~i~~l~~L~~L~l~~c~~l~ 661 (883)
++...+..+. .++.|++|+|..|. ++.. .. ....+++|.||++++|. |+. +-....++.+|+.+.+++|....
T Consensus 177 iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~ 256 (483)
T KOG4341|consen 177 ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE 256 (483)
T ss_pred ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc
Confidence 4445555555 67777777777754 4432 12 23567777777777763 221 22223455556666666664432
Q ss_pred --hchhhhcCcCCCCceecCCCCCccccC--ccCCCCCCCCccCceEeCcCCCCCccccc-ccccCCCeeEEeccCCCCC
Q 047584 662 --KLCADMGNLIKLHHLKNSNTDSLEEMP--LGIVRLTCLQTLCNFVVAKDSGSGLRELK-SLTHLERTLKISKLENVKC 736 (883)
Q Consensus 662 --~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~l~-~L~~L~~~L~i~~l~~~~~ 736 (883)
.+-..-....-+..+++..|..++..- .--..+..||.|..-.....+...+..|+ +..+|+ .+.+..+....+
T Consensus 257 le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~-~l~l~~c~~fsd 335 (483)
T KOG4341|consen 257 LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQ-VLELSGCQQFSD 335 (483)
T ss_pred HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceE-EEeccccchhhh
Confidence 111111233334444444554222210 00112445566644433333333344443 344444 455554443322
Q ss_pred ccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCC-----cCCCcCCCCCe
Q 047584 737 VGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFP-----TWLGDSLFSNL 811 (883)
Q Consensus 737 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-----~~~~~~~l~~L 811 (883)
.. +...-.++++|+.|++..|... .+......-..++.|+.|.++++...+-- .... -.+..|
T Consensus 336 ~~--ft~l~rn~~~Le~l~~e~~~~~---------~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~-c~~~~l 403 (483)
T KOG4341|consen 336 RG--FTMLGRNCPHLERLDLEECGLI---------TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS-CSLEGL 403 (483)
T ss_pred hh--hhhhhcCChhhhhhccccccee---------hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc-cccccc
Confidence 11 2222235666777776554221 11111222234677777777765432211 0011 135677
Q ss_pred eEEEEecCCCCCC--CCCCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceee
Q 047584 812 VTLKFENCGICTA--LPSVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLR 868 (883)
Q Consensus 812 ~~L~L~~~~~~~~--l~~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~ 868 (883)
..|.|++|+.+.+ +..+..+++|+.+++.+|..+..-+..-+. ..+|+++...
T Consensus 404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~----~~lp~i~v~a 458 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA----THLPNIKVHA 458 (483)
T ss_pred ceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH----hhCccceehh
Confidence 8888888877654 446667778888888777665544332222 2355555543
No 117
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00023 Score=81.32 Aligned_cols=197 Identities=16% Similarity=0.151 Sum_probs=113.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+.+........+. ..++.=...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 568899988888888885432 2467888999999999999999874211100000 0001001111111
Q ss_pred HHhccC-----CCCCCChHHHHHHHHHH-----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC-hhH
Q 047584 268 SSITKQ-----TVDNNDLNFLQEELKKQ-----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN-EEV 336 (883)
Q Consensus 268 ~~l~~~-----~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~v 336 (883)
...... ......++++.. +.+. ..+++-+||+|++..........+...+........+|++|.. ..+
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred cCCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 110000 000111222221 2221 2356679999999887767777777776554445555555544 444
Q ss_pred HHh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh-HHHHHHHhhh
Q 047584 337 AKI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP-LAAKTLGGLL 401 (883)
Q Consensus 337 a~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~~l 401 (883)
... ......+++.+++.++....+...+..... .-..+.+..|++.++|.+ -|+..+...+
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 322 223357899999999999888775543211 112567888999999965 5776665544
No 118
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.94 E-value=0.00025 Score=72.97 Aligned_cols=195 Identities=17% Similarity=0.161 Sum_probs=119.8
Q ss_pred hhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhh-----ccCCeEEEEEeCCCCCHHHHHHHHHHH
Q 047584 195 TEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ-----DHFDLKAWTCVSEDFDVKGLTRTILSS 269 (883)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~F~~~~wv~~s~~~~~~~~~~~il~~ 269 (883)
..++++.+++..+ ...+..-+.|||..|.|||++++++....-.. ..+ .++.|.+...++...+...|+.+
T Consensus 44 ~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 44 EALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHHHH
Confidence 3456666666554 33456779999999999999999998642111 111 46677788889999999999999
Q ss_pred hccCCCCCCChHHHHHHHHHHhCC-CcEEEEEeCCCCCC------hhhHhhhcccccCCCCCcEEEEeCCChhHHHhc--
Q 047584 270 ITKQTVDNNDLNFLQEELKKQLSR-KKFLLVLDDVWNEN------YTDWARLSLPFQAGAQGSKIVVTTRNEEVAKIM-- 340 (883)
Q Consensus 270 l~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~------~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~-- 340 (883)
++.+.........+.......++. +-=+||+|.+++.- ....-.....+.+.-.=+-|.+-|+..--+-..
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence 998876666666666665566643 44578899996521 111222233343333445566766653322211
Q ss_pred ---CCCccEeCCCCCHHh-HHHHHHhhh--cCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 341 ---SLDQAYELKSLSTED-CLSVLAQHS--LETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 341 ---~~~~~~~l~~L~~~~-~~~Lf~~~a--~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
+-..++.++....++ ...|+.... .+-.. ...-..++++..|...++|+.=-+
T Consensus 200 QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 200 QLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHH
Confidence 122456676665544 444443321 22222 122234789999999999987443
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00023 Score=84.92 Aligned_cols=190 Identities=13% Similarity=0.112 Sum_probs=110.7
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-....... .+... ...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHHH
Confidence 578999999999999996542 23567899999999999999997643211110000 00000 0001110
Q ss_pred HH-------hccCCCCCCChHHHHHHHHHH-----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeC-CCh
Q 047584 268 SS-------ITKQTVDNNDLNFLQEELKKQ-----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTT-RNE 334 (883)
Q Consensus 268 ~~-------l~~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~ 334 (883)
.. +.........++++.. +++. ..+++-++|||++.......++.|...+..-...+.+|++| ...
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 00 0000001112233322 2211 23556688999998888788888887777665666666555 444
Q ss_pred hHHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 335 EVAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 335 ~va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
.+.. .......|++..++.++....+.+..-... . .--.+....|++.++|.+..+
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v---~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-V---PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHH
Confidence 4443 233456899999999998888776542211 1 112456678999999988433
No 120
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00025 Score=81.93 Aligned_cols=196 Identities=16% Similarity=0.126 Sum_probs=109.8
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEE-eCCCCCHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTC-VSEDFDVKGLTRTI 266 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i 266 (883)
.+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.......++...|-. +...+..-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 578999999999999885542 235588999999999999999886421111111001110 00001100111111
Q ss_pred HHHhccC-----CCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEE-eCCChhH
Q 047584 267 LSSITKQ-----TVDNNDLNFLQEELKKQ----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVV-TTRNEEV 336 (883)
Q Consensus 267 l~~l~~~-----~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TTR~~~v 336 (883)
...-... .......+++...+... ..+++-++|+|++........+.+...+......+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1100000 00111233333322222 234555789999987766667777777766555565554 4444444
Q ss_pred HH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChH
Q 047584 337 AK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPL 392 (883)
Q Consensus 337 a~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 392 (883)
.. .......+++.+++.++....+.+.+-.... .--.+.+..|++.++|..-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi----~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI----QIDADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHH
Confidence 33 2344578999999999988777765432111 1115678889999999654
No 121
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00036 Score=81.02 Aligned_cols=188 Identities=16% Similarity=0.197 Sum_probs=108.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhcc---C-CeEEE-EEeCCCCCHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH---F-DLKAW-TCVSEDFDVKGL 262 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~w-v~~s~~~~~~~~ 262 (883)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.++...--... + .|..- .+....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 578999999999999996542 2456788999999999999999763111000 0 00000 0000000000
Q ss_pred HHHHHHHhccCCCCCCChH---HHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEE-EeCCChhHH
Q 047584 263 TRTILSSITKQTVDNNDLN---FLQEELKKQ-LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIV-VTTRNEEVA 337 (883)
Q Consensus 263 ~~~il~~l~~~~~~~~~~~---~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTTR~~~va 337 (883)
.+. .......+ ++...+... ..+++-++|+|++.......+..+...+........+| +||+...+.
T Consensus 91 ------eid--aasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 ------EMD--AASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred ------EEe--ccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 000 00001122 222222211 13566689999998777677777776666544455544 555555554
Q ss_pred H-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 338 K-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 338 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
. .......+.+.+++.++....+...+-.... .--.+.+..|++.++|.+--+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 3 2333468999999999998888765432111 111456788999999977533
No 122
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.0005 Score=77.72 Aligned_cols=183 Identities=15% Similarity=0.132 Sum_probs=107.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhh--h-----------------ccCCeE
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRV--Q-----------------DHFDLK 248 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~-----------------~~F~~~ 248 (883)
.+++|-+..+..|..++.... -...+.++|+.|+||||+|+.++....- . +.|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 568899999999999996542 2356778999999999999998763210 0 001111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEE
Q 047584 249 AWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQ-LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKI 327 (883)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 327 (883)
+++..+....+. +...+...+... ..+++-++|+|++........+.+...+........+
T Consensus 91 ~eidaas~~gvd------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGID------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCHH------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 222111111111 111111111111 1356679999999777656666666666554445555
Q ss_pred EEe-CCChhHHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 328 VVT-TRNEEVAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 328 lvT-TR~~~va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
|++ |+...+.. .......+.+.+++.++....+...+-...- .--.+.+..|++.++|.+-.+...
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 554 44433332 2223457899999999988887775532211 112466778899999977655443
No 123
>CHL00181 cbbX CbbX; Provisional
Probab=97.90 E-value=0.00043 Score=72.87 Aligned_cols=134 Identities=15% Similarity=0.127 Sum_probs=73.4
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
..+.++|++|+||||+|+.++......+.-...-|+.++. .++ .....+.. .......+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhccc-----hHHHHHHHHHc---cC
Confidence 4588899999999999999987321111111122455442 222 22221111 11122223332 23
Q ss_pred EEEEEeCCCCC---------ChhhHhhhcccccCCCCCcEEEEeCCChhHHHhc--------CCCccEeCCCCCHHhHHH
Q 047584 296 FLLVLDDVWNE---------NYTDWARLSLPFQAGAQGSKIVVTTRNEEVAKIM--------SLDQAYELKSLSTEDCLS 358 (883)
Q Consensus 296 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~--------~~~~~~~l~~L~~~~~~~ 358 (883)
-+|++|++... ..+....+...+.......+||+++....+.... .....+.+++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999542 1122233344444444556777777654443221 123468899999999988
Q ss_pred HHHhhhc
Q 047584 359 VLAQHSL 365 (883)
Q Consensus 359 Lf~~~a~ 365 (883)
++...+-
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 8887654
No 124
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.89 E-value=0.00018 Score=75.18 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=82.8
Q ss_pred cceecchhhHHHHHHHHcC---------CCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC
Q 047584 188 AKVYGRETEKKEIVELLLK---------DDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD 258 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 258 (883)
..++|.+..+++|.+.... ......+...-+.++|++|+||||+|+.+++...-.+.-....++.++.
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~--- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER--- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH---
Confidence 3578988888776543211 1111223456788999999999999999986321111111122333322
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC--------hhhHhhhcccccCCCCCcEEEEe
Q 047584 259 VKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN--------YTDWARLSLPFQAGAQGSKIVVT 330 (883)
Q Consensus 259 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvT 330 (883)
.++.. ...+ .........+.+. ..-+|++|++.... .+....+...+........+|++
T Consensus 83 -~~l~~----~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 83 -ADLVG----EYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred -HHhhh----hhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 11111 1110 1112222223222 23488999996421 12233344444333333455666
Q ss_pred CCChhHHHh-------cC-CCccEeCCCCCHHhHHHHHHhhhc
Q 047584 331 TRNEEVAKI-------MS-LDQAYELKSLSTEDCLSVLAQHSL 365 (883)
Q Consensus 331 TR~~~va~~-------~~-~~~~~~l~~L~~~~~~~Lf~~~a~ 365 (883)
+...+.... .. ....+.+++++.++-.+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 554333111 11 124578899999999888887654
No 125
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.00017 Score=72.13 Aligned_cols=174 Identities=18% Similarity=0.228 Sum_probs=99.8
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+|+|-+.-++++.=++..... ..+.+-.+.++|++|.||||||+-+++. ....+. ++.+....-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHH
Confidence 6799999999988777754332 3345778999999999999999999983 433321 22222211111222233
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccC--------CCCC-----------cEEE
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQA--------GAQG-----------SKIV 328 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~g-----------s~il 328 (883)
..+.. .=++.+|.++......-+-+..++.+ .+++ +-|=
T Consensus 99 t~Le~----------------------~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TNLEE----------------------GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hcCCc----------------------CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 32222 22334455443322111111111111 1122 2344
Q ss_pred EeCCChhHHHhcC--CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 329 VTTRNEEVAKIMS--LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 329 vTTR~~~va~~~~--~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
.|||.-.+...+. -.-..+++..+.+|-.++..+.+..-.- +--++.+.+|+++..|-|--+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHH
Confidence 6888755443332 2356789999999999999887743221 112567899999999999533
No 126
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.0005 Score=80.02 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=110.6
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhh---------------------hccCC
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRV---------------------QDHFD 246 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~ 246 (883)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+...... ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 578999999999999996542 2356889999999999999888763210 11222
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhhcccccCCC
Q 047584 247 LKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQ----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGA 322 (883)
Q Consensus 247 ~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 322 (883)
. ..+..+... ..+++...+.+. ..+++=++|+|++.......++.+...+....
T Consensus 92 ~-~~ld~~~~~---------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 I-HELDAASNN---------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred e-EEecccccC---------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1 122221111 122222222111 12345578999998877777888877777655
Q ss_pred CCcEEEE-eCCChhHHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 323 QGSKIVV-TTRNEEVAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 323 ~gs~ilv-TTR~~~va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
..+.+|+ ||+...+-. .......+++.+++.++....+.+.+-...- .--.+.+..|++.++|..--+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi----~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI----TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 5666555 545444443 2334467999999999998888775533211 111456788999999977543
No 127
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.00028 Score=79.20 Aligned_cols=165 Identities=15% Similarity=0.170 Sum_probs=99.8
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccC--CeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCC
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--DLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSR 293 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~ 293 (883)
.-+.|+|..|+|||+|++++.+. +.... -.+++++ ..++...+...+.... + ....+.+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~-~~~~~~~~~~- 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKAVDILQKTH------K-EIEQFKNEIC- 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------h-HHHHHHHHhc-
Confidence 45899999999999999999983 32222 2334443 4556666666654210 1 1223333333
Q ss_pred CcEEEEEeCCCCCCh-hhH-hhhcccccCC-CCCcEEEEeCCChh---------HHHhcCCCccEeCCCCCHHhHHHHHH
Q 047584 294 KKFLLVLDDVWNENY-TDW-ARLSLPFQAG-AQGSKIVVTTRNEE---------VAKIMSLDQAYELKSLSTEDCLSVLA 361 (883)
Q Consensus 294 kr~LlVlDdv~~~~~-~~~-~~l~~~l~~~-~~gs~ilvTTR~~~---------va~~~~~~~~~~l~~L~~~~~~~Lf~ 361 (883)
+.-+||+||+..... ..+ +.+...+... ..|..||+|+.... +...+..+-.+.+++++.++-..++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 345888999965432 122 2232222211 23456888876432 22233445678899999999999999
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHH
Q 047584 362 QHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLG 398 (883)
Q Consensus 362 ~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 398 (883)
+++-...- . ..--+++..-|++.++|.|-.+.-+.
T Consensus 286 ~~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 286 KEIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 88743210 0 01226788899999999997765444
No 128
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.85 E-value=1.8e-06 Score=88.25 Aligned_cols=227 Identities=16% Similarity=0.160 Sum_probs=136.7
Q ss_pred ccccCCCcccEEeccCCCcc-----ccccccccCCCccEEecCCC---Cchhhchhh-------hcCcCCCCceecCCCC
Q 047584 618 DSVGDLRYLRYLNLSGTVIR-----SLPESVNKLYNLHSLLLEDC---DRLKKLCAD-------MGNLIKLHHLKNSNTD 682 (883)
Q Consensus 618 ~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~c---~~l~~lp~~-------i~~L~~L~~L~l~~~~ 682 (883)
+.+..+..+.+++|++|.+. .+.+.+.+.++|+..++++- ....++|.. +-..++|+.|+||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34566788999999999876 34566777889999998751 112344443 4567899999999997
Q ss_pred CccccCcc----CCCCCCCCccCceEeCcCCCCCccccc-ccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEE
Q 047584 683 SLEEMPLG----IVRLTCLQTLCNFVVAKDSGSGLRELK-SLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLN 757 (883)
Q Consensus 683 ~~~~~p~~----i~~L~~L~~L~~~~~~~~~~~~~~~l~-~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 757 (883)
.....++. |..+++|++|+..+++-.. ..-..++ .|..|. ........++|+.+...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~al~~l~-----------------~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGRALFELA-----------------VNKKAASKPKLRVFICG 165 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHHHHHHHH-----------------HHhccCCCcceEEEEee
Confidence 43333333 4456777777543332110 0000011 011111 11234556889999887
Q ss_pred eccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCC-----CcCCCCCeeEEEEecCCCCCC----CC-C
Q 047584 758 WTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWL-----GDSLFSNLVTLKFENCGICTA----LP-S 827 (883)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~-----~~~~l~~L~~L~L~~~~~~~~----l~-~ 827 (883)
.|+..+ ......-..++.++.|+.+.++.|.+. |..+ .-..+++|+.|+|.+|..... +. .
T Consensus 166 rNrlen-------~ga~~~A~~~~~~~~leevr~~qN~I~--~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 166 RNRLEN-------GGATALAEAFQSHPTLEEVRLSQNGIR--PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cccccc-------ccHHHHHHHHHhccccceEEEeccccc--CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 654332 111223345566789999999987653 2111 012479999999999975432 21 6
Q ss_pred CCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeecccc
Q 047584 828 VGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 828 l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
+..+|+|+.|++++| .++.-+..-+...-..++|+|+.|.+.++
T Consensus 237 L~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred hcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc
Confidence 777899999999999 44433321111011235999999998775
No 129
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=3.8e-06 Score=94.29 Aligned_cols=83 Identities=30% Similarity=0.399 Sum_probs=57.9
Q ss_pred hcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhh-hcCcCCCCc
Q 047584 597 LLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHH 675 (883)
Q Consensus 597 l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~ 675 (883)
+..+++|++|++++|.|+.+. .+..+..|+.|++++|.|+.++ .+..+.+|+.+++++| .+..+... ...+.+|+.
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~ 190 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYN-RIVDIENDELSELISLEE 190 (414)
T ss_pred hhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhcccCCcc-hhhhhhhhhhhhccchHH
Confidence 446778888888888877773 4566677888888888877764 3445777888888874 44444433 467777888
Q ss_pred eecCCCC
Q 047584 676 LKNSNTD 682 (883)
Q Consensus 676 L~l~~~~ 682 (883)
+.+.+|.
T Consensus 191 l~l~~n~ 197 (414)
T KOG0531|consen 191 LDLGGNS 197 (414)
T ss_pred HhccCCc
Confidence 8877775
No 130
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.84 E-value=0.00023 Score=76.96 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=84.6
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|.+...+.+..++.... ...++.++|++|+||||+|+.+++. .... ...++.+. .... ..++.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~~-~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRID-FVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccHH-HHHHHH
Confidence 578999999999999986432 2467888999999999999999873 2211 23344433 1211 111111
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHhhhcccccCCCCCcEEEEeCCChh-HHH-hcCCCc
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNE-NYTDWARLSLPFQAGAQGSKIVVTTRNEE-VAK-IMSLDQ 344 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-va~-~~~~~~ 344 (883)
..+... .-+.+.+-++|+||+... ..+....+...+.....++++|+||.... +.. ..+...
T Consensus 89 ~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 111000 001134567899999655 22233334444444456778888886532 111 112224
Q ss_pred cEeCCCCCHHhHHHHHHh
Q 047584 345 AYELKSLSTEDCLSVLAQ 362 (883)
Q Consensus 345 ~~~l~~L~~~~~~~Lf~~ 362 (883)
.+.++..+.++...++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 567777777776655543
No 131
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=7.2e-07 Score=98.81 Aligned_cols=91 Identities=27% Similarity=0.359 Sum_probs=58.6
Q ss_pred hhhhcCCCceeEEeeCCCCCCCcCccccCC---------------------------------CcccEEeccCCCccccc
Q 047584 594 LPKLLKLQRLRVFSLRGYCIPELPDSVGDL---------------------------------RYLRYLNLSGTVIRSLP 640 (883)
Q Consensus 594 ~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l---------------------------------~~L~~L~L~~~~i~~lp 640 (883)
+-+++.|+.||+|.|.+|++...- .+..+ ..|.+-+.++|.+..+-
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence 446678899999999999865421 11111 11333444555555555
Q ss_pred cccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccC
Q 047584 641 ESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMP 688 (883)
Q Consensus 641 ~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p 688 (883)
.++.-++.|+.|||++ |++..+- .+..|++|+||+++.|. +..+|
T Consensus 181 ~SLqll~ale~LnLsh-Nk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp 225 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSH-NKFTKVD-NLRRLPKLKHLDLSYNC-LRHVP 225 (1096)
T ss_pred HHHHHHHHhhhhccch-hhhhhhH-HHHhcccccccccccch-hcccc
Confidence 6666778888888888 4555553 67778888888888877 66655
No 132
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00073 Score=76.39 Aligned_cols=180 Identities=15% Similarity=0.123 Sum_probs=110.7
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhh--hcc----------------CC-eE
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRV--QDH----------------FD-LK 248 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------F~-~~ 248 (883)
.+++|-+..++.|...+.... -..+..++|+.|+||||+|+.+.+..-- ... +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 578999999999999985442 2456789999999999999988763110 000 00 11
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCC
Q 047584 249 AWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQ----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQG 324 (883)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 324 (883)
+.+..+.. ...+++...+... ..+++-++|+|++.....+....+...+......
T Consensus 89 ~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 11211111 1122333222210 1145668899999888777777777777665556
Q ss_pred cEEEEeCCC-hhHHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 325 SKIVVTTRN-EEVAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 325 s~ilvTTR~-~~va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
+++|++|.+ ..+.. .......+++.+++.++....+...+-.... .--++.+..|++.++|.+--+...
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi----~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV----SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 666666644 22222 2223468999999999998888765432211 112567889999999998554433
No 133
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00076 Score=78.52 Aligned_cols=196 Identities=16% Similarity=0.187 Sum_probs=111.0
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-. ..+... ...+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHh
Confidence 568899999999999986542 23567899999999999999998742111 111000 01111112222222
Q ss_pred HHhccC-----CCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEE-eCCChhHH
Q 047584 268 SSITKQ-----TVDNNDLNFLQEELKKQ----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVV-TTRNEEVA 337 (883)
Q Consensus 268 ~~l~~~-----~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TTR~~~va 337 (883)
...... .......+.+.+.+... ..+++-++|+|++.......+..+...+........+|+ |+....+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 111110 00112233333322211 124556889999987776777777777765444555554 44333333
Q ss_pred H-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 338 K-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 338 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
. .......+++..++.++....+...+..... .. -.+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~i---s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EI---EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2233467888899998888777665432111 11 1356788999999988655433
No 134
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=9e-06 Score=81.12 Aligned_cols=202 Identities=20% Similarity=0.179 Sum_probs=114.0
Q ss_pred CCCceeEEeeCCCCCCC---cCccccCCCcccEEeccCCCcccccccc-ccCCCccEEecCCCCch--hhchhhhcCcCC
Q 047584 599 KLQRLRVFSLRGYCIPE---LPDSVGDLRYLRYLNLSGTVIRSLPESV-NKLYNLHSLLLEDCDRL--KKLCADMGNLIK 672 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~---lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~l~~c~~l--~~lp~~i~~L~~ 672 (883)
.+++++.|||.+|.|+. +-..+.+|++|++|+|+.|.+..--.++ -.+.+|++|.|.+ +.+ ..+-..+..+|+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcchh
Confidence 67889999999998875 3344578999999999998765332222 3567899999887 333 333445678888
Q ss_pred CCceecCCCCCccccC---ccCCCC-CCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCC
Q 047584 673 LHHLKNSNTDSLEEMP---LGIVRL-TCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGK 748 (883)
Q Consensus 673 L~~L~l~~~~~~~~~p---~~i~~L-~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~ 748 (883)
++.|+++.|+ +..+- ..+... +.+.+|... +++-.+ -+.+++ .-..+
T Consensus 148 vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~-------------~c~~~~--w~~~~~-------------l~r~F 198 (418)
T KOG2982|consen 148 VTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQL-------------PCLEQL--WLNKNK-------------LSRIF 198 (418)
T ss_pred hhhhhhccch-hhhhccccccccccchhhhhhhcC-------------CcHHHH--HHHHHh-------------HHhhc
Confidence 8888888875 22211 001100 011111100 000000 001111 11234
Q ss_pred CCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC--
Q 047584 749 KNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP-- 826 (883)
Q Consensus 749 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-- 826 (883)
+++..+.+..|+.. ....-+...+++.+.-|+|+.+.+....+.-.-..|+.|..|.+++++..+.+.
T Consensus 199 pnv~sv~v~e~PlK----------~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLK----------TESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG 268 (418)
T ss_pred ccchheeeecCccc----------chhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCC
Confidence 67777777554222 112233455666677777776654322111001237888999999988776654
Q ss_pred -----CCCCcCcccceecc
Q 047584 827 -----SVGQLPSLKHLVVC 840 (883)
Q Consensus 827 -----~l~~lp~L~~L~L~ 840 (883)
.++.|++++.|+=+
T Consensus 269 err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 269 ERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cceEEEEeeccceEEecCc
Confidence 45678888877544
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.3e-05 Score=56.18 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=29.2
Q ss_pred CcccEEeccCCCccccccccccCCCccEEecCCCCchhhch
Q 047584 624 RYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLC 664 (883)
Q Consensus 624 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp 664 (883)
++|++|++++|.|+++|+.+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4688888888888888877888888888888884 455543
No 136
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00065 Score=76.34 Aligned_cols=181 Identities=17% Similarity=0.158 Sum_probs=106.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhh---------------------ccCC
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ---------------------DHFD 246 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~ 246 (883)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 578999999999999986542 23668889999999999999997632110 0111
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCc
Q 047584 247 LKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKK-QLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGS 325 (883)
Q Consensus 247 ~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 325 (883)
.+++........++ ..++...+.. -..+++-++|+|++........+.+...+.......
T Consensus 92 -~~~i~g~~~~gid~------------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGIED------------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCHHH------------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 11111101111111 1111111111 112566788999997665555666666666554566
Q ss_pred EEEEeCC-ChhHHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChH-HHHH
Q 047584 326 KIVVTTR-NEEVAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPL-AAKT 396 (883)
Q Consensus 326 ~ilvTTR-~~~va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~ 396 (883)
.+|++|. ...+.. .......+++.+++.++....+...+-.... .--.+.+..|++.++|.+- |+..
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6666553 333322 2233467999999999988887765432111 1125678889999999764 4433
No 137
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.75 E-value=0.0007 Score=71.36 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=73.0
Q ss_pred EEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcE
Q 047584 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKF 296 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~ 296 (883)
-+.++|++|.|||++|+.++......+.....-|+.++. .++ +..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHHc---cCc
Confidence 588999999999999988876321111111223454442 122 22222211 11222233322 235
Q ss_pred EEEEeCCCCC---------ChhhHhhhcccccCCCCCcEEEEeCCChhHHHhc--------CCCccEeCCCCCHHhHHHH
Q 047584 297 LLVLDDVWNE---------NYTDWARLSLPFQAGAQGSKIVVTTRNEEVAKIM--------SLDQAYELKSLSTEDCLSV 359 (883)
Q Consensus 297 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~--------~~~~~~~l~~L~~~~~~~L 359 (883)
+|+||++... ..+.+..+...+.....+.+||+++......... .....+.+++++.+|...+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999532 1122344444454444566777777654332221 1135688999999999999
Q ss_pred HHhhhc
Q 047584 360 LAQHSL 365 (883)
Q Consensus 360 f~~~a~ 365 (883)
+...+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 887653
No 138
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.74 E-value=0.00026 Score=85.64 Aligned_cols=181 Identities=17% Similarity=0.151 Sum_probs=96.5
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhcc------CCeEEE-EEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH------FDLKAW-TCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~w-v~~s~~~~~~ 260 (883)
..++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+++. +... .+..+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh-----
Confidence 578999999999999986542 234679999999999999999873 2211 123333 22221
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCCC-------hhhHhh-hcccccCCCCCcEEEEeC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQL-SRKKFLLVLDDVWNEN-------YTDWAR-LSLPFQAGAQGSKIVVTT 331 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~-------~~~~~~-l~~~l~~~~~gs~ilvTT 331 (883)
+ ..+......-.+.+...+.+.- .+++.+|++|+++... ..+... +...+.. ..-++|-||
T Consensus 254 -l-------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaT 323 (852)
T TIGR03345 254 -L-------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAAT 323 (852)
T ss_pred -h-------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEec
Confidence 0 0000000000112222222222 2468999999985431 112112 2323222 234566666
Q ss_pred CChhHHHh-------cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh
Q 047584 332 RNEEVAKI-------MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 332 R~~~va~~-------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 391 (883)
...+.... ....+.+.+++++.++...++....-.-...+...-..+....+++.+.++.
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 55333211 1233689999999999999975433211110111112455566666666543
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.0012 Score=76.05 Aligned_cols=192 Identities=16% Similarity=0.100 Sum_probs=111.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+++..--...... ..+....+- +.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 578999999999999996542 2467889999999999999999874211100000 000000000 1110
Q ss_pred HHhcc-----CCCCCCChHHHHHHHHH----HhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCC-ChhHH
Q 047584 268 SSITK-----QTVDNNDLNFLQEELKK----QLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTR-NEEVA 337 (883)
Q Consensus 268 ~~l~~-----~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR-~~~va 337 (883)
..-.. ........+++...... -..+++-++|+|++.......++.+...+........+|++|. ...+-
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 00000 00001222333222111 1235666899999988776777777777766555666665553 33333
Q ss_pred Hh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHH
Q 047584 338 KI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAK 395 (883)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 395 (883)
.. ......+++.+++.++....+...+..... +--++.+..|++.++|.+-.+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 22 233457899999999988888776543221 1125667889999999885443
No 140
>PF14516 AAA_35: AAA-like domain
Probab=97.72 E-value=0.0072 Score=65.35 Aligned_cols=200 Identities=16% Similarity=0.142 Sum_probs=117.7
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC-----CCHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED-----FDVKGL 262 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~~~ 262 (883)
+-.|.|...-+++.+.|..+ ...+.|.|+-.+|||+|...+.+..+- ..| .++++++... .+....
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHH
Confidence 44668886667777777653 258999999999999999999874322 233 4557776542 245555
Q ss_pred HHHHHHHhcc----CCC-------CCCChHHHHHHHHHHh---CCCcEEEEEeCCCCCCh-----hhHhhhcccccCCC-
Q 047584 263 TRTILSSITK----QTV-------DNNDLNFLQEELKKQL---SRKKFLLVLDDVWNENY-----TDWARLSLPFQAGA- 322 (883)
Q Consensus 263 ~~~il~~l~~----~~~-------~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~-----~~~~~l~~~l~~~~- 322 (883)
++.++..+.. ... ...........+.+++ .+++.+|+||++...-. .++-.+.+.+-...
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 5555544432 210 0112233444455543 26899999999954211 11212211111110
Q ss_pred ----CCcEEEEeCCChhH---HHh----cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh
Q 047584 323 ----QGSKIVVTTRNEEV---AKI----MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 323 ----~gs~ilvTTR~~~v---a~~----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 391 (883)
-.+-.++.....+. ... ......+.|++++.+|...|...+...- . ....++|...+||+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~---~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----S---QEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----C---HHHHHHHHHHHCCCH
Confidence 11112222221111 111 1223578999999999999988764221 1 233889999999999
Q ss_pred HHHHHHHhhhcCC
Q 047584 392 LAAKTLGGLLHGK 404 (883)
Q Consensus 392 Lai~~~~~~l~~~ 404 (883)
--+..++..+..+
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999888664
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.71 E-value=0.00026 Score=85.07 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=85.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchh---hhccC-CeEEEEEeCCCCCHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKR---VQDHF-DLKAWTCVSEDFDVKGLT 263 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~~~~ 263 (883)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ +..+|.. +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh
Confidence 468999999999999986542 23467999999999999999987421 11111 3334421 111111
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCCC---------hhhHhhhcccccCCCCCcEEEEeCCC
Q 047584 264 RTILSSITKQTVDNNDLNFLQEELKKQL-SRKKFLLVLDDVWNEN---------YTDWARLSLPFQAGAQGSKIVVTTRN 333 (883)
Q Consensus 264 ~~il~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~ilvTTR~ 333 (883)
. +.... .+.++....+.+.+ ..++.+|++|+++.-- .+.-+.+...+.. ..-++|-+|..
T Consensus 251 a-------~~~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~ 320 (731)
T TIGR02639 251 A-------GTKYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTY 320 (731)
T ss_pred h-------hcccc-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCH
Confidence 1 00000 11222222222222 3468999999996321 1112223333322 12344544443
Q ss_pred hhHHH-------hcCCCccEeCCCCCHHhHHHHHHhhh
Q 047584 334 EEVAK-------IMSLDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 334 ~~va~-------~~~~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
.+... .....+.+.++.++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22211 11223578999999999999998644
No 142
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.70 E-value=0.00021 Score=74.37 Aligned_cols=167 Identities=18% Similarity=0.206 Sum_probs=103.7
Q ss_pred ccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 047584 187 EAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (883)
++.+.+|+.++..+..++...+. .-+..|.|+|-.|.|||.+.+++.+... -..+|+++-+.++.+-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 46788999999999998865432 2456779999999999999999998542 136899999999999999999
Q ss_pred HHHhccCCCCCCCh----HH---HHHHHHH--HhC--CCcEEEEEeCCCCCChhhHhhhc----ccccC-CCCCcEEEEe
Q 047584 267 LSSITKQTVDNNDL----NF---LQEELKK--QLS--RKKFLLVLDDVWNENYTDWARLS----LPFQA-GAQGSKIVVT 330 (883)
Q Consensus 267 l~~l~~~~~~~~~~----~~---~~~~l~~--~L~--~kr~LlVlDdv~~~~~~~~~~l~----~~l~~-~~~gs~ilvT 330 (883)
+.+....+.+.... +. ....+.+ ... ++.++||||++..- .+.+... ..+.. .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99985222222111 11 2222222 122 46899999999432 1211110 00111 1112334444
Q ss_pred CCCh--hHHHh-cCCC--ccEeCCCCCHHhHHHHHHhh
Q 047584 331 TRNE--EVAKI-MSLD--QAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 331 TR~~--~va~~-~~~~--~~~~l~~L~~~~~~~Lf~~~ 363 (883)
+-.. ..-.. +++. .++.++.-+.++-..++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4332 22111 2333 35677889999998888763
No 143
>PRK06620 hypothetical protein; Validated
Probab=97.69 E-value=0.00057 Score=68.65 Aligned_cols=135 Identities=13% Similarity=0.055 Sum_probs=79.5
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6799999999999999998876421 1 1111 00000 0 011 123
Q ss_pred EEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChh-------HHHhcCCCccEeCCCCCHHhHHHHHHhhhcCCC
Q 047584 296 FLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEE-------VAKIMSLDQAYELKSLSTEDCLSVLAQHSLETT 368 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-------va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~ 368 (883)
-++++||+..-.....-.+...+. ..|..||+|++... +...+...-+++++++++++...++.+.+...
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~- 163 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS- 163 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-
Confidence 478899996321111222222222 34668999987532 22233445689999999999888887765421
Q ss_pred CCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 369 DFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 369 ~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
....+ +++..-|++.+.|.--.+
T Consensus 164 ~l~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 SVTIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CCCCC---HHHHHHHHHHccCCHHHH
Confidence 11111 577788888888765444
No 144
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.69 E-value=0.00036 Score=77.15 Aligned_cols=178 Identities=16% Similarity=0.159 Sum_probs=96.3
Q ss_pred cceecchhhHHHHHHHHcCCCC-------CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS-------RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++.|++..+++|.+.+..+-. -+-...+-|.++|++|+|||++|+++++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 6789999999999887632110 01123567899999999999999999973 3222 233321 1
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC-----------ChhhHhhhcccc---cC--CCCC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNE-----------NYTDWARLSLPF---QA--GAQG 324 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~~~g 324 (883)
++.. ...+ .....+...+...-...+.+|+|||+... +......+...+ .. ...+
T Consensus 200 ~l~~----~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 200 ELVQ----KFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred HHhH----hhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 1111 1110 11111222222222356789999999542 011111122111 11 1235
Q ss_pred cEEEEeCCChhHH-Hhc-C---CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCC
Q 047584 325 SKIVVTTRNEEVA-KIM-S---LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGL 390 (883)
Q Consensus 325 s~ilvTTR~~~va-~~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl 390 (883)
.+||.||...+.. ..+ . -...+.++..+.++..++|..+.....- ...-. ...+++.+.|.
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGA 336 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCC
Confidence 5677777654322 111 1 2356899999999999999877643221 11112 35566666664
No 145
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.68 E-value=0.00032 Score=71.02 Aligned_cols=184 Identities=17% Similarity=0.155 Sum_probs=113.0
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEE-EEeCCCCCHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAW-TCVSEDFDVKGLTRTI 266 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~s~~~~~~~~~~~i 266 (883)
.+++|-+..+..|...+... ...+...+|++|.|||+-|++++...--.+-|.+++- .++|....+. +.+.=
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 57889999999998888652 3688999999999999999998874333345554432 3444332211 10000
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHh--CCCc-EEEEEeCCCCCChhhHhhhcccccCCCCCcE-EEEeCCChhHHHh-cC
Q 047584 267 LSSITKQTVDNNDLNFLQEELKKQL--SRKK-FLLVLDDVWNENYTDWARLSLPFQAGAQGSK-IVVTTRNEEVAKI-MS 341 (883)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~l~~~L--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~-ilvTTR~~~va~~-~~ 341 (883)
..+.+.+.....+.. .-++ -.||||+......+.|..+...+.+....++ |+||+--..+-.. ..
T Consensus 109 ----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 109 ----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 001111111010000 0123 4788999999989999999888877555565 4555543332221 12
Q ss_pred CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChH
Q 047584 342 LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPL 392 (883)
Q Consensus 342 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 392 (883)
.-.-++.++|.+++...-+...+-.... +-..+..+.|++.++|---
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGDLR 225 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCcHH
Confidence 2246889999999988888776643221 1225677889999998543
No 146
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.67 E-value=1.9e-06 Score=90.02 Aligned_cols=257 Identities=18% Similarity=0.129 Sum_probs=132.5
Q ss_pred CCCceeEEeeCCCC-CCC--cCccccCCCcccEEeccCC-Ccccc--ccccccCCCccEEecCCCCchhh--chhhhcCc
Q 047584 599 KLQRLRVFSLRGYC-IPE--LPDSVGDLRYLRYLNLSGT-VIRSL--PESVNKLYNLHSLLLEDCDRLKK--LCADMGNL 670 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~-~~~--lp~~i~~l~~L~~L~L~~~-~i~~l--p~~i~~l~~L~~L~l~~c~~l~~--lp~~i~~L 670 (883)
+++++..|.+.+|. ++. +-..-..++.|++|+|..| .++.. -.-...+++|.+|+++.|..++. +-.-..++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 67778888888876 332 1122256788888888874 44422 12234678888899888876654 22224455
Q ss_pred CCCCceecCCCCCcc--ccCccCCCCCCCCccCceEeCcCCCCCccc-ccccccCCCeeEEeccCCCCCccchHhhhcCC
Q 047584 671 IKLHHLKNSNTDSLE--EMPLGIVRLTCLQTLCNFVVAKDSGSGLRE-LKSLTHLERTLKISKLENVKCVGDAMEAQMDG 747 (883)
Q Consensus 671 ~~L~~L~l~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~-l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 747 (883)
.+|+.+.+.+|.... .+-.-=+....+-++..-..+..+...+.. -..+..|+ .+...+...+ ....+.+.-.+
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq-~l~~s~~t~~--~d~~l~aLg~~ 318 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ-VLCYSSCTDI--TDEVLWALGQH 318 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh-hhcccCCCCC--chHHHHHHhcC
Confidence 666666666654111 000000011111111111111111111111 12234444 4444444332 22234444456
Q ss_pred CCCCCceEEEeccCCCCCCCcchhhHHhhhcCC-CCCCCcceEEEEecCCCC---CCcCCCcCCCCCeeEEEEecCCCCC
Q 047584 748 KKNLKELSLNWTCSTDGSSSREAETEMGVLDVL-KPHANLEQFCIKGYGGMK---FPTWLGDSLFSNLVTLKFENCGICT 823 (883)
Q Consensus 748 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~---~p~~~~~~~l~~L~~L~L~~~~~~~ 823 (883)
..+|+.|.++.|... ....+..+ .+++.|+.+++.++.... +-+.- ..++.|+.|.|++|..++
T Consensus 319 ~~~L~~l~l~~c~~f----------sd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls--~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQF----------SDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS--RNCPRLRVLSLSHCELIT 386 (483)
T ss_pred CCceEEEeccccchh----------hhhhhhhhhcCChhhhhhcccccceehhhhHhhhc--cCCchhccCChhhhhhhh
Confidence 677888887765321 01112222 245677777776654321 11111 236788888888887655
Q ss_pred CC--C----CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccccccc
Q 047584 824 AL--P----SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDMEEW 875 (883)
Q Consensus 824 ~l--~----~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~L 875 (883)
+. . .-..+..|+.|.|++|+.+..-..++.. ..++|+.+++.+|...
T Consensus 387 D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-----~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 387 DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-----ICRNLERIELIDCQDV 439 (483)
T ss_pred hhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-----hCcccceeeeechhhh
Confidence 53 1 2234667888888888766654443333 4778888887777654
No 147
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.67 E-value=3.7e-06 Score=74.19 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=46.1
Q ss_pred eeEEeeCCCCCCCcC---ccccCCCcccEEeccCCCccccccccc-cCCCccEEecCCCCchhhchhhhcCcCCCCceec
Q 047584 603 LRVFSLRGYCIPELP---DSVGDLRYLRYLNLSGTVIRSLPESVN-KLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKN 678 (883)
Q Consensus 603 Lr~L~L~~~~~~~lp---~~i~~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l 678 (883)
+..++|+.|.+-.++ ..+.+..+|...+|++|.++++|+.+. +.+.+.+|++.+ +.+.++|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhccc
Confidence 344455555443332 233444555555555555555555444 233555555555 455555555555555555555
Q ss_pred CCCCCccccCccCCCCCCC
Q 047584 679 SNTDSLEEMPLGIVRLTCL 697 (883)
Q Consensus 679 ~~~~~~~~~p~~i~~L~~L 697 (883)
+.|. +...|.-|..|.+|
T Consensus 108 ~~N~-l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 108 RFNP-LNAEPRVIAPLIKL 125 (177)
T ss_pred ccCc-cccchHHHHHHHhH
Confidence 5554 44444444443333
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.65 E-value=0.0004 Score=84.51 Aligned_cols=156 Identities=22% Similarity=0.215 Sum_probs=85.8
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchh---hhccC-CeEEEEEeCCCCCHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKR---VQDHF-DLKAWTCVSEDFDVKGLT 263 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~~~~ 263 (883)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 358999999999999996542 23457999999999999999987421 11111 244553 1 222211
Q ss_pred HHHHHHhccCCCCCCChHH-HHHHHHHHhCCCcEEEEEeCCCCCC-------hhhHhhhcccccCCCCCcEEEEeCCChh
Q 047584 264 RTILSSITKQTVDNNDLNF-LQEELKKQLSRKKFLLVLDDVWNEN-------YTDWARLSLPFQAGAQGSKIVVTTRNEE 335 (883)
Q Consensus 264 ~~il~~l~~~~~~~~~~~~-~~~~l~~~L~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 335 (883)
.+.... .+.++ +...+.+.-..++.+|++|++..-- ..+...+..+.... ..-++|.+|...+
T Consensus 248 -------ag~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~e 318 (821)
T CHL00095 248 -------AGTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDE 318 (821)
T ss_pred -------ccCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHH
Confidence 111111 11222 2223333334568999999994210 01122222222221 1245566665544
Q ss_pred HHHh-------cCCCccEeCCCCCHHhHHHHHHhh
Q 047584 336 VAKI-------MSLDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 336 va~~-------~~~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
.... ......+.+...+.++...++...
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 3221 123356888888999988887643
No 149
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.0012 Score=76.73 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=107.6
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-....+ ...+..-...+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 578999999999999986542 235678999999999999999876321100000 00000001111110
Q ss_pred HHhcc-----CCCCCCChHH---HHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEE-EeCCChhHH
Q 047584 268 SSITK-----QTVDNNDLNF---LQEELKKQ-LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIV-VTTRNEEVA 337 (883)
Q Consensus 268 ~~l~~-----~~~~~~~~~~---~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTTR~~~va 337 (883)
..-.. ........++ +...+... ..+++-++|+|++..........+...+........+| +||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00000 0000111222 22222111 12455678899998776666777777666554555555 455544444
Q ss_pred Hh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChH-HHHHH
Q 047584 338 KI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPL-AAKTL 397 (883)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 397 (883)
.. ......+++.+++.++....+...+-.... .--.+.+..|++.++|..- |+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi----~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI----SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 233467889999999888777664422111 1114667889999999764 44444
No 150
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.002 Score=74.46 Aligned_cols=192 Identities=18% Similarity=0.157 Sum_probs=107.9
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+.+.......-+ ..+++.-...+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 579999999999999996542 246677899999999999999975311000000 00011111111111
Q ss_pred HHhccC-----CCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEE-eCCChhHH
Q 047584 268 SSITKQ-----TVDNNDLNFLQEELKKQ----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVV-TTRNEEVA 337 (883)
Q Consensus 268 ~~l~~~-----~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TTR~~~va 337 (883)
...... .......+++...+.+. ..+++-++|+|++.......+..+...+........+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 110000 00111222222211111 135566889999987766677777766655444444444 54444333
Q ss_pred H-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHH
Q 047584 338 K-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAK 395 (883)
Q Consensus 338 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 395 (883)
. .......+.+.+++.++....+...+-...- .--.+.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi----~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI----EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 2 2233457889999999988888775532211 1114667888999998876443
No 151
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0012 Score=70.83 Aligned_cols=97 Identities=19% Similarity=0.144 Sum_probs=67.0
Q ss_pred CCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCCh-hHH-HhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCC
Q 047584 293 RKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNE-EVA-KIMSLDQAYELKSLSTEDCLSVLAQHSLETTDF 370 (883)
Q Consensus 293 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~va-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 370 (883)
+++-++|+|++..........+...+.....++.+|+||.+. .+. +..+.-..+.+.+++.+++...+.......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 344455779998888888888877777666677777777664 332 223334679999999999998887653111
Q ss_pred CCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 371 SSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 371 ~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
..+.+..++..++|.|+.+..+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1334567789999999865544
No 152
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.64 E-value=0.00078 Score=75.41 Aligned_cols=158 Identities=18% Similarity=0.211 Sum_probs=91.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccC--CeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--DLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 292 (883)
...+.|+|..|+|||+|++++++. +.... ..+++++. .++...+...+... ..+. +.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 356899999999999999999984 33333 23555643 34444555544321 2222 233333
Q ss_pred CCcEEEEEeCCCCCChhh-H-hhhcccccCC-CCCcEEEEeCCCh--hH-------HHhcCCCccEeCCCCCHHhHHHHH
Q 047584 293 RKKFLLVLDDVWNENYTD-W-ARLSLPFQAG-AQGSKIVVTTRNE--EV-------AKIMSLDQAYELKSLSTEDCLSVL 360 (883)
Q Consensus 293 ~kr~LlVlDdv~~~~~~~-~-~~l~~~l~~~-~~gs~ilvTTR~~--~v-------a~~~~~~~~~~l~~L~~~~~~~Lf 360 (883)
+ .-+|||||+....... + +.+...+... ..|..+|+|+... .+ ...+.....+.+++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 3488999996532211 1 1222222111 2345677877642 11 112223357899999999999999
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 361 AQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 361 ~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
.+++-.... .. -+++...|++.+.|.+-.+
T Consensus 278 ~~~~~~~~~-~l---~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 278 QKKAEEEGL-EL---PDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHcCC-CC---CHHHHHHHHHhcCCCHHHH
Confidence 988754221 11 2577788888888876543
No 153
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.63 E-value=0.0014 Score=65.51 Aligned_cols=105 Identities=25% Similarity=0.267 Sum_probs=60.9
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
..++|.|.+++.|++-...=- ......-+.++|..|.|||++++++.+...-++ .--|.+.+.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~----------- 89 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE----------- 89 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH-----------
Confidence 789999999998875432210 011235577899999999999999987432221 111222221
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHhhhccccc
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNE-NYTDWARLSLPFQ 319 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~ 319 (883)
+-.++..+.+.|+. ...||+|++||+.-+ .......++..+.
T Consensus 90 --------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 90 --------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred --------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 11222233333331 356999999999533 2244555655554
No 154
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=3.3e-05 Score=90.52 Aligned_cols=129 Identities=19% Similarity=0.191 Sum_probs=90.9
Q ss_pred CCeeEEEeEecCCcccccc--ccccCCCCceEeeeccccCCCCCCCCCCchhhhc-CCCceeEEeeCCCCCCCcCccccC
Q 047584 546 RNLRHLSYIRGDYDGVQRF--GDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLL-KLQRLRVFSLRGYCIPELPDSVGD 622 (883)
Q Consensus 546 ~~~r~l~~~~~~~~~~~~~--~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~-~l~~Lr~L~L~~~~~~~lp~~i~~ 622 (883)
.++|||.+.+...- ...| ..-..++.|++|.+.+.. +....+..++ +|++|++||+|+++++.+ ..+++
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISR 193 (699)
T ss_pred HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCce------ecchhHHHHhhccCccceeecCCCCccCc-HHHhc
Confidence 45667666443221 1122 122468999999987655 2333455666 999999999999999988 78999
Q ss_pred CCcccEEeccCCCccccc--cccccCCCccEEecCCCCchh------hchhhhcCcCCCCceecCCCC
Q 047584 623 LRYLRYLNLSGTVIRSLP--ESVNKLYNLHSLLLEDCDRLK------KLCADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 623 l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~l~~c~~l~------~lp~~i~~L~~L~~L~l~~~~ 682 (883)
|++|+.|.+.+-.+..-. ..+.+|++|++||+|...... ..-+.-..||+||.|+.|++.
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 999999999987776432 467899999999999743221 111223458999999999875
No 155
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.0016 Score=73.23 Aligned_cols=158 Identities=20% Similarity=0.180 Sum_probs=92.4
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccC-C-eEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCC
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHF-D-LKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSR 293 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~ 293 (883)
.-+.|+|.+|+|||+||+++++. +.... . .++|++. .++..++...+... ..+ .+.+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~~ 193 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYRK 193 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHHh
Confidence 45999999999999999999984 33332 3 4566653 34555555555321 122 23333334
Q ss_pred CcEEEEEeCCCCCC-hhhH-hhhcccccC-CCCCcEEEEeCCC-hh-HH---H----hcCCCccEeCCCCCHHhHHHHHH
Q 047584 294 KKFLLVLDDVWNEN-YTDW-ARLSLPFQA-GAQGSKIVVTTRN-EE-VA---K----IMSLDQAYELKSLSTEDCLSVLA 361 (883)
Q Consensus 294 kr~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~ilvTTR~-~~-va---~----~~~~~~~~~l~~L~~~~~~~Lf~ 361 (883)
+.-+|++||+.... ...+ ..+...+.. ...|..||+||.. .. +. . .+.....+.+++.+.+.-..++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 55689999996431 1111 122222211 1234568888753 22 11 1 12334578999999999999998
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 362 QHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 362 ~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
+++-... ...+ ++++.-|++.+.|..-.+
T Consensus 274 ~~~~~~~-~~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 274 KMLEIEH-GELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHhcC-CCCC---HHHHHHHHhccccCHHHH
Confidence 8864321 1111 567888888888765433
No 156
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.56 E-value=0.00068 Score=75.88 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=87.4
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRK 294 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~k 294 (883)
..-+.|+|+.|+|||+|++++++. +....-.+++++ ...+...+...+... .. ..+++.+. +
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 356889999999999999999984 332223345554 334444554444321 11 22344333 3
Q ss_pred cEEEEEeCCCCCChhhH--hhhcccccC-CCCCcEEEEeCCCh---------hHHHhcCCCccEeCCCCCHHhHHHHHHh
Q 047584 295 KFLLVLDDVWNENYTDW--ARLSLPFQA-GAQGSKIVVTTRNE---------EVAKIMSLDQAYELKSLSTEDCLSVLAQ 362 (883)
Q Consensus 295 r~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTTR~~---------~va~~~~~~~~~~l~~L~~~~~~~Lf~~ 362 (883)
.-+|++||+.......| +.+...+.. ...|..||+||... .+...+..+..+.+.+++.++...++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45888999865422211 122222211 01355688888542 1122233456889999999999999988
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHhcCCC
Q 047584 363 HSLETTDFSSHKSLEEIGKEIVIKCNGL 390 (883)
Q Consensus 363 ~a~~~~~~~~~~~l~~~~~~I~~~c~Gl 390 (883)
++-... ...+ +++..-|+..+.|.
T Consensus 283 k~~~~~-~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALS-IRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhcCCC
Confidence 764322 1111 45566676666643
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0033 Score=67.06 Aligned_cols=197 Identities=18% Similarity=0.153 Sum_probs=113.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhh-------------hccCCeEEEEEeC
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRV-------------QDHFDLKAWTCVS 254 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~~s 254 (883)
.+++|-+..++.+...+..+. -.....++|+.|+||+++|..+.+..-- ...++...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468899999999999996542 2478999999999999999888653110 1112223344211
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEE
Q 047584 255 EDFDVKGLTRTILSSIT--KQTVDNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKI 327 (883)
Q Consensus 255 ~~~~~~~~~~~il~~l~--~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 327 (883)
...+-..+..+-++..+ ........++++. .+.+.+ .+++-++|+|++..........+...+....+..-|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 00000000001111111 0111122233332 333333 356778999999877767777776666554433334
Q ss_pred EEeCCChhHHH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 328 VVTTRNEEVAK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 328 lvTTR~~~va~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
++|+....+-. ..+....+.+.++++++..+.+.+...... .......++..++|.|..+..+
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHH
Confidence 44444433333 334457899999999999999987642111 1112367899999999765443
No 158
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=2.2e-05 Score=78.39 Aligned_cols=232 Identities=16% Similarity=0.114 Sum_probs=120.7
Q ss_pred CCceeEEeeCCCCCCCcCc--cc-cCCCcccEEeccCCCccc---cccccccCCCccEEecCCCCchhhchhhh-cCcCC
Q 047584 600 LQRLRVFSLRGYCIPELPD--SV-GDLRYLRYLNLSGTVIRS---LPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLIK 672 (883)
Q Consensus 600 l~~Lr~L~L~~~~~~~lp~--~i-~~l~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L~l~~c~~l~~lp~~i-~~L~~ 672 (883)
..-+..|.+.++.|...-. .+ ..+.+++.|||.+|.|+. +-..+.+|+.|++|+++.| .+...-... .-+.+
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKN 122 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccc
Confidence 3445577788888765422 23 457889999999998874 3344568999999999874 433211111 24468
Q ss_pred CCceecCCCCC-ccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCC
Q 047584 673 LHHLKNSNTDS-LEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNL 751 (883)
Q Consensus 673 L~~L~l~~~~~-~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L 751 (883)
|+.|-+.++.- .......+..++.++.|. ++.+++..++...+.... . -+.+
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelH------------------------mS~N~~rq~n~Dd~c~e~-~--s~~v 175 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELH------------------------MSDNSLRQLNLDDNCIED-W--STEV 175 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhh------------------------hccchhhhhccccccccc-c--chhh
Confidence 88888877651 112222233333333331 111111111100000000 0 0233
Q ss_pred CceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCC--CCCCCCCC
Q 047584 752 KELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGI--CTALPSVG 829 (883)
Q Consensus 752 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~--~~~l~~l~ 829 (883)
.+|++..|.-. .=......-..++++..+.+..+++.+....-+...++.+-.|+|+.++. +..+..+.
T Consensus 176 ~tlh~~~c~~~---------~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln 246 (418)
T KOG2982|consen 176 LTLHQLPCLEQ---------LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALN 246 (418)
T ss_pred hhhhcCCcHHH---------HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHc
Confidence 34443332100 00001111123477888888877666544333333477777888887753 23355788
Q ss_pred CcCcccceeccCcccceecCCCccCCCCCCCCCCcceee
Q 047584 830 QLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLR 868 (883)
Q Consensus 830 ~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~ 868 (883)
.+|.|..|.+++++....+..+....--...+|+++.|+
T Consensus 247 ~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 899999999998876655432211100113466666654
No 159
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.54 E-value=0.0015 Score=74.37 Aligned_cols=156 Identities=13% Similarity=0.191 Sum_probs=91.6
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccC--CeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCC
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--DLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSR 293 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~ 293 (883)
..+.|+|..|+|||.|++++++. ....+ -.+++++ ..++..++...+... ..+ .+++.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~~~----~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----KGD----SFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----cHH----HHHHHhhc
Confidence 35899999999999999999984 33322 2345554 344444544443321 111 23333332
Q ss_pred CcEEEEEeCCCCCCh-hhHhh-hcccccCC-CCCcEEEEeCCCh---------hHHHhcCCCccEeCCCCCHHhHHHHHH
Q 047584 294 KKFLLVLDDVWNENY-TDWAR-LSLPFQAG-AQGSKIVVTTRNE---------EVAKIMSLDQAYELKSLSTEDCLSVLA 361 (883)
Q Consensus 294 kr~LlVlDdv~~~~~-~~~~~-l~~~l~~~-~~gs~ilvTTR~~---------~va~~~~~~~~~~l~~L~~~~~~~Lf~ 361 (883)
-=+|||||+..... ..|.. +...+... ..|..|||||... .+...+...-.+.|...+.+.-..++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 35788999965432 22222 22222211 2355688888762 222333456789999999999999999
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHhcCCChHH
Q 047584 362 QHSLETTDFSSHKSLEEIGKEIVIKCNGLPLA 393 (883)
Q Consensus 362 ~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 393 (883)
+++-... ...+ ++++.-|++.+.+..-.
T Consensus 457 kka~~r~-l~l~---~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 457 KKAVQEQ-LNAP---PEVLEFIASRISRNIRE 484 (617)
T ss_pred HHHHhcC-CCCC---HHHHHHHHHhccCCHHH
Confidence 8875432 1111 56677777777765443
No 160
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.54 E-value=0.0011 Score=75.20 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=93.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCC--eEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD--LKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 292 (883)
..-+.|+|++|+|||+|++++++. +...+. .+++++. .++..++...+... ..+ .+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TME----EFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cHH----HHHHHHh
Confidence 356899999999999999999984 444432 3455543 33344444444321 122 2333333
Q ss_pred CCcEEEEEeCCCCCChhh-H-hhhcccccC-CCCCcEEEEeCCChh--H-------HHhcCCCccEeCCCCCHHhHHHHH
Q 047584 293 RKKFLLVLDDVWNENYTD-W-ARLSLPFQA-GAQGSKIVVTTRNEE--V-------AKIMSLDQAYELKSLSTEDCLSVL 360 (883)
Q Consensus 293 ~kr~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~ilvTTR~~~--v-------a~~~~~~~~~~l~~L~~~~~~~Lf 360 (883)
+.-+|||||+....... + ..+...+.. ...|..||+|+.... + ...+.....+.+++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 34589999996532111 1 222221111 113455788776531 1 222334467999999999999999
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 361 AQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 361 ~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
.+++-... .. --+++..-|++.+.|..-.+
T Consensus 290 ~~~~~~~~-~~---l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 290 KKKAEEEG-ID---LPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHcC-CC---CCHHHHHHHHcCcCCCHHHH
Confidence 98875321 11 12567888999999876543
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.53 E-value=0.00098 Score=81.39 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=84.6
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhcc------CCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH------FDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~s~~~~~~~ 261 (883)
..++||+.++.++++.|.... ..-+.++|++|+|||++|+.+... +... ....+|.- ++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 458999999999999996542 244568999999999999998873 2221 12333321 1111
Q ss_pred HHHHHHHHhccCCCCCCChH-HHHHHHHHHhC-CCcEEEEEeCCCCCC-------hhhHhhhcccccCCCCCcEEEEeCC
Q 047584 262 LTRTILSSITKQTVDNNDLN-FLQEELKKQLS-RKKFLLVLDDVWNEN-------YTDWARLSLPFQAGAQGSKIVVTTR 332 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~-~~~~~l~~~L~-~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTTR 332 (883)
+. .+.... .+.+ .+...+.+.-+ +++.+|++|+++.-. ..+...+..+....+ .-++|-+|.
T Consensus 240 l~-------a~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt 310 (852)
T TIGR03346 240 LI-------AGAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATT 310 (852)
T ss_pred Hh-------hcchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCc
Confidence 11 011111 1122 22222332222 468999999996321 011122222222221 234555555
Q ss_pred ChhHHHh-------cCCCccEeCCCCCHHhHHHHHHhh
Q 047584 333 NEEVAKI-------MSLDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 333 ~~~va~~-------~~~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
..+.... ......+.++..+.++...++...
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 4443221 122356889999999999988765
No 162
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=4e-05 Score=89.84 Aligned_cols=132 Identities=23% Similarity=0.217 Sum_probs=71.2
Q ss_pred CcccEEeccCCCcc--ccccccc-cCCCccEEecCCCCch-hhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCc
Q 047584 624 RYLRYLNLSGTVIR--SLPESVN-KLYNLHSLLLEDCDRL-KKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQT 699 (883)
Q Consensus 624 ~~L~~L~L~~~~i~--~lp~~i~-~l~~L~~L~l~~c~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 699 (883)
.+|++|++++...- .-|..++ .||+|+.|.+++-... .++-.-..++++|..||+|+++ +..+ .++++|++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 34666666553211 1122333 4677777777662211 2233334577788888888776 5555 57778888887
Q ss_pred cCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCc--cchHhhhcCCCCCCCceEEEe
Q 047584 700 LCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCV--GDAMEAQMDGKKNLKELSLNW 758 (883)
Q Consensus 700 L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~--~~~~~~~l~~~~~L~~L~l~~ 758 (883)
|...+..-.....+.+|-+|++|+ .|+|+.-...... .......-..+++|+.|+.++
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~-vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLR-VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCC-eeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 765554444444556666666666 6666533222111 111122333466777776654
No 163
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00072 Score=80.21 Aligned_cols=156 Identities=21% Similarity=0.289 Sum_probs=87.5
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhcc-----CCeEEEEEeCCCCCHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH-----FDLKAWTCVSEDFDVKGL 262 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s~~~~~~~~ 262 (883)
..++||+.++.++++.|.... ..-+.++|++|+|||++|+.+++.. +... .++.+|.. ++..+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHHH
Confidence 468999999999999997642 2335689999999999999998732 1111 13444421 12111
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCC--------ChhhHhhhcccccCCCCCcEEEEeCCC
Q 047584 263 TRTILSSITKQTVDNNDLNFLQEELKKQL-SRKKFLLVLDDVWNE--------NYTDWARLSLPFQAGAQGSKIVVTTRN 333 (883)
Q Consensus 263 ~~~il~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTTR~ 333 (883)
+.+.... .+.+.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-++|-+|..
T Consensus 254 -------laG~~~~-Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~ 324 (758)
T PRK11034 254 -------LAGTKYR-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_pred -------hcccchh-hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCCh
Confidence 1111111 12222222222222 346789999999531 112333333333322 23445555554
Q ss_pred hhHHHh-------cCCCccEeCCCCCHHhHHHHHHhhh
Q 047584 334 EEVAKI-------MSLDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 334 ~~va~~-------~~~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
.+.... ....+.+.++.++.++...++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 443221 1223579999999999999988653
No 164
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00065 Score=76.66 Aligned_cols=167 Identities=19% Similarity=0.264 Sum_probs=98.5
Q ss_pred ccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 047584 187 EAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (883)
+.+.+|.++.+++|+++|.-..-...-+-.++.+||++|+|||.|++.++. .....| +-++++.--|..++-.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRG-- 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRG-- 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhcc--
Confidence 467899999999999998532111223458999999999999999999997 455555 3345555555444321
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChh-------hHhhhccc-----ccCC-----CCCcEE-E
Q 047584 267 LSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYT-------DWARLSLP-----FQAG-----AQGSKI-V 328 (883)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~-------~~~~l~~~-----l~~~-----~~gs~i-l 328 (883)
+..++-..-+..+.+.+++. +.+.-+++||.+.-...+ ..-++..| |.+. --=|.| .
T Consensus 395 ----HRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 395 ----HRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ----ccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 11122122223333444433 567889999998543221 11111111 1110 011334 4
Q ss_pred EeCCCh-h-H-HHhcCCCccEeCCCCCHHhHHHHHHhhhc
Q 047584 329 VTTRNE-E-V-AKIMSLDQAYELKSLSTEDCLSVLAQHSL 365 (883)
Q Consensus 329 vTTR~~-~-v-a~~~~~~~~~~l~~L~~~~~~~Lf~~~a~ 365 (883)
|||-+. + + +..+....++++.+.+++|-.++-+++..
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 555541 1 2 33445668899999999998888777654
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.0006 Score=63.64 Aligned_cols=88 Identities=17% Similarity=0.024 Sum_probs=47.2
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCC-
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRK- 294 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~k- 294 (883)
..+.|+|++|+||||+|+.++... ......++++..+........... ...................+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999998742 222223555555443322222111 111111111122222223333444333
Q ss_pred cEEEEEeCCCCCC
Q 047584 295 KFLLVLDDVWNEN 307 (883)
Q Consensus 295 r~LlVlDdv~~~~ 307 (883)
..+|++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999997754
No 166
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0021 Score=69.38 Aligned_cols=163 Identities=13% Similarity=0.093 Sum_probs=90.9
Q ss_pred ceec-chhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 189 KVYG-RETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 189 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.++| -+..++.+...+.... -.....++|+.|+||||+|+.+.+..--....... .+.. -...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~----C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGT----CTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCc----CHHHHHHh
Confidence 3566 5666777777775442 24677899999999999999986532111100000 0000 00000000
Q ss_pred HHhccC------CCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCCh-hH
Q 047584 268 SSITKQ------TVDNNDLNFLQEELKKQ----LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNE-EV 336 (883)
Q Consensus 268 ~~l~~~------~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v 336 (883)
..-.+. .......+++...+... ..+.+=++|+|++..........+...+.....++.+|++|.+. .+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 000000 00112233333322211 22455678999998777667777777777766777777777653 23
Q ss_pred HH-hcCCCccEeCCCCCHHhHHHHHHhh
Q 047584 337 AK-IMSLDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 337 a~-~~~~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
.. ..+....+++.+++.++....+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22 2334578999999999998888653
No 167
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.42 E-value=0.0042 Score=75.20 Aligned_cols=164 Identities=18% Similarity=0.225 Sum_probs=85.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
..++|.+..+++|.+++............++.++|++|+|||++|+.+++. ....| .-++++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g--- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRG--- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcC---
Confidence 568999999999988764321111223458999999999999999999983 33333 2233333333332211
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhh----Hhhhccc--------ccCCC-------CCcEEE
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTD----WARLSLP--------FQAGA-------QGSKIV 328 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~----~~~l~~~--------l~~~~-------~gs~il 328 (883)
. ...+.......+...+... ..++-+|+||.+....... ...+... |.+.. ....+|
T Consensus 392 -~--~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 392 -H--RRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred -C--CCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0 0111111222333444433 2334478999985442110 1111111 11110 123334
Q ss_pred EeCCChh-HHH-hcCCCccEeCCCCCHHhHHHHHHhh
Q 047584 329 VTTRNEE-VAK-IMSLDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 329 vTTR~~~-va~-~~~~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
.||.... +.. .......+.+.+++.++-..++..+
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHH
Confidence 4443321 111 1233357888999988887777654
No 168
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=2.1e-05 Score=69.64 Aligned_cols=95 Identities=24% Similarity=0.254 Sum_probs=78.0
Q ss_pred hhhhcCCCceeEEeeCCCCCCCcCcccc-CCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCC
Q 047584 594 LPKLLKLQRLRVFSLRGYCIPELPDSVG-DLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIK 672 (883)
Q Consensus 594 ~~~l~~l~~Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~ 672 (883)
+..+.+..+|...+|++|.+..+|+.+. +.+.+.+|+|++|.|.++|..+..++.|+.|+++. |.+...|..+..|.+
T Consensus 46 vy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIK 124 (177)
T ss_pred HHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHh
Confidence 3445577888889999999999988774 44588999999999999999999999999999998 577888888888999
Q ss_pred CCceecCCCCCccccCcc
Q 047584 673 LHHLKNSNTDSLEEMPLG 690 (883)
Q Consensus 673 L~~L~l~~~~~~~~~p~~ 690 (883)
|-.|+..+|. ...+|..
T Consensus 125 l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 125 LDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHhcCCCCc-cccCcHH
Confidence 9999988876 5555543
No 169
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.42 E-value=0.00025 Score=65.48 Aligned_cols=21 Identities=43% Similarity=0.464 Sum_probs=19.4
Q ss_pred EEEEecCCchHHHHHHHHhcc
Q 047584 218 IPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~ 238 (883)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 578999999999999999984
No 170
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.0018 Score=70.17 Aligned_cols=137 Identities=20% Similarity=0.233 Sum_probs=83.6
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCC
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSR 293 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~ 293 (883)
....+.|+|..|.|||.|++++.+ ....+......+.++ .+....+++..+... -...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 457899999999999999999999 455555433333332 344444444444321 123455555
Q ss_pred CcEEEEEeCCCCCCh-hhHhh-hcccccCC-CCCcEEEEeCCCh---------hHHHhcCCCccEeCCCCCHHhHHHHHH
Q 047584 294 KKFLLVLDDVWNENY-TDWAR-LSLPFQAG-AQGSKIVVTTRNE---------EVAKIMSLDQAYELKSLSTEDCLSVLA 361 (883)
Q Consensus 294 kr~LlVlDdv~~~~~-~~~~~-l~~~l~~~-~~gs~ilvTTR~~---------~va~~~~~~~~~~l~~L~~~~~~~Lf~ 361 (883)
.-=++++||++--.. +.|.. +...|..- ..|-.||+|++.. .+...+..+-.+.+.+++.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 344888999965221 12222 22222211 2344899998652 333444566789999999999999999
Q ss_pred hhhcCC
Q 047584 362 QHSLET 367 (883)
Q Consensus 362 ~~a~~~ 367 (883)
+++...
T Consensus 255 kka~~~ 260 (408)
T COG0593 255 KKAEDR 260 (408)
T ss_pred HHHHhc
Confidence 876543
No 171
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.39 E-value=0.00059 Score=73.70 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=54.1
Q ss_pred ccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCcc
Q 047584 620 VGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLG 690 (883)
Q Consensus 620 i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~ 690 (883)
+..+.++++|++++|.++.+|. -..+|+.|++++|+.+..+|..+ .++|++|++++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 4457899999999999999983 23479999999999999988755 368999999998667777754
No 172
>PRK08116 hypothetical protein; Validated
Probab=97.38 E-value=0.0007 Score=70.57 Aligned_cols=103 Identities=28% Similarity=0.337 Sum_probs=59.5
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
..+.++|.+|+|||.||.++++. ...+-..+++++ ..+++..+....... ...+.. .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~--~~~~~~----~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSS--GKEDEN----EIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcc--ccccHH----HHHHHhcCCC
Confidence 45899999999999999999984 333333456665 344555554443321 111112 2333344333
Q ss_pred EEEEEeCCCCCChhhHhh--hcccccCC-CCCcEEEEeCCC
Q 047584 296 FLLVLDDVWNENYTDWAR--LSLPFQAG-AQGSKIVVTTRN 333 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTTR~ 333 (883)
||||||+..+...+|.. +...+... ..|..+|+||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996554445543 22222211 245668999875
No 173
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.38 E-value=0.0019 Score=78.54 Aligned_cols=154 Identities=17% Similarity=0.159 Sum_probs=83.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhcc------CCeEEE-EEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH------FDLKAW-TCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~w-v~~s~~~~~~ 260 (883)
..++||+.++.++++.|.... ..-+.++|.+|+|||++|+.+... +... ....+| +.++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~vp~~l~~~~~~~l~l~~----- 244 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMGA----- 244 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH--hhcCCCchhhCCCEEEEEehhh-----
Confidence 469999999999999996542 245679999999999999999873 2111 122322 22221
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCCCh-------hhHhh-hcccccCCCCCcEEEEeC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQL-SRKKFLLVLDDVWNENY-------TDWAR-LSLPFQAGAQGSKIVVTT 331 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~-------~~~~~-l~~~l~~~~~gs~ilvTT 331 (883)
+.. +......-.+.+...+.+.- .+++.+|++|+++.-.. .+-.. +...+.. ..-++|-+|
T Consensus 245 -l~a-------g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaT 314 (857)
T PRK10865 245 -LVA-------GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGAT 314 (857)
T ss_pred -hhh-------ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcC
Confidence 110 00011111112222333222 25689999999954310 11122 3333322 234556555
Q ss_pred CChhHHHhc-------CCCccEeCCCCCHHhHHHHHHhhh
Q 047584 332 RNEEVAKIM-------SLDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 332 R~~~va~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
...+..... ...+.+.+...+.++...++....
T Consensus 315 t~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 554432111 122356677778888888886543
No 174
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.007 Score=64.35 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=100.7
Q ss_pred hHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCC-----eEEEEEeCCCCCHHHHHHHHHHHh
Q 047584 196 EKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-----LKAWTCVSEDFDVKGLTRTILSSI 270 (883)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----~~~wv~~s~~~~~~~~~~~il~~l 270 (883)
..+.+...+..+. -...+.++|+.|+||+++|..+....--..... ++-|+..+..+|+..+. .
T Consensus 12 ~~~~l~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~------~ 80 (319)
T PRK08769 12 AYDQTVAALDAGR-----LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS------F 80 (319)
T ss_pred HHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe------c
Confidence 3556666664432 245688999999999999988876321111000 00011111111110000 0
Q ss_pred ccCCC-----CCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC-hhHH-H
Q 047584 271 TKQTV-----DNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN-EEVA-K 338 (883)
Q Consensus 271 ~~~~~-----~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~va-~ 338 (883)
.+... ....++++.+ +.+.+ .+++=++|+|++.......-..+...+.....++.+|++|.+ ..+. +
T Consensus 81 ~p~~~~~k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 81 IPNRTGDKLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred CCCcccccccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchH
Confidence 00000 0112333222 22222 245668999999877766666776677666667777766664 3333 3
Q ss_pred hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHH
Q 047584 339 IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLG 398 (883)
Q Consensus 339 ~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 398 (883)
..+.-..+.+.+++.+++...+..... + +..+..++..++|.|+.+..+.
T Consensus 160 IrSRCq~i~~~~~~~~~~~~~L~~~~~-------~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 160 IRSRCQRLEFKLPPAHEALAWLLAQGV-------S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HHhhheEeeCCCcCHHHHHHHHHHcCC-------C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 333446789999999999888875311 1 2336678999999998665443
No 175
>PRK10536 hypothetical protein; Provisional
Probab=97.35 E-value=0.0014 Score=66.36 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=76.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEe----CC-----CCC
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCV----SE-----DFD 258 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~----s~-----~~~ 258 (883)
..+.+|......+..++.+. .++.++|++|.|||+||.++..+.-..+.|+.++-+.- ++ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 44678888899999988542 48999999999999999998874322344554333211 11 012
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHHHHH-----------HHHhCCCcE---EEEEeCCCCCChhhHhhhcccccCCCCC
Q 047584 259 VKGLTRTILSSITKQTVDNNDLNFLQEEL-----------KKQLSRKKF---LLVLDDVWNENYTDWARLSLPFQAGAQG 324 (883)
Q Consensus 259 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l-----------~~~L~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~~g 324 (883)
..+-+...+.-+...-......+.+...+ -.+++++.+ +||+|.+.+.+......+... .+.+
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~ 203 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCC
Confidence 22222211111100000000001111111 135566654 999999988876555555444 4578
Q ss_pred cEEEEeCCCh
Q 047584 325 SKIVVTTRNE 334 (883)
Q Consensus 325 s~ilvTTR~~ 334 (883)
|++|+|--..
T Consensus 204 sk~v~~GD~~ 213 (262)
T PRK10536 204 VTVIVNGDIT 213 (262)
T ss_pred CEEEEeCChh
Confidence 9999987543
No 176
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0077 Score=67.96 Aligned_cols=107 Identities=22% Similarity=0.291 Sum_probs=71.4
Q ss_pred cccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHH
Q 047584 186 VEAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRT 265 (883)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 265 (883)
.+.+.+|.++-+++|++++.-..-.++.+-+++..+|++|||||.+|+.++. .....| +-++|+.-.|..++-.
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkG- 482 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKG- 482 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcc-
Confidence 3478999999999999998643323445668999999999999999999997 344444 2367777666665421
Q ss_pred HHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCC
Q 047584 266 ILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVW 304 (883)
Q Consensus 266 il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 304 (883)
+..++-..-+..+.+.|++. +...-|+.+|.|.
T Consensus 483 -----HRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvD 515 (906)
T KOG2004|consen 483 -----HRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVD 515 (906)
T ss_pred -----cceeeeccCChHHHHHHHhh-CCCCceEEeehhh
Confidence 11122222233444445443 4567788899884
No 177
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.30 E-value=0.0018 Score=77.66 Aligned_cols=166 Identities=17% Similarity=0.190 Sum_probs=88.9
Q ss_pred ccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 047584 187 EAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (883)
+...+|.++.+++|+++|............++.++|++|+||||+|+.++.. ....| +-++.+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 3579999999999999886321111223468999999999999999999962 33333 223444443433322111
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhh----HhhhcccccC---------------CCCCcEE
Q 047584 267 LSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTD----WARLSLPFQA---------------GAQGSKI 327 (883)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~---------------~~~gs~i 327 (883)
+. ........+...+.+. ....-+|+||.+....... ...+...+.+ .-...-+
T Consensus 396 -~~-----~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RT-----YIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hc-----cCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 00 1111112233333332 2244578899985432211 1222222211 1122334
Q ss_pred EEeCCChhHHHh-cCCCccEeCCCCCHHhHHHHHHhhh
Q 047584 328 VVTTRNEEVAKI-MSLDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 328 lvTTR~~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
|.|+....+... .+....+.+.+++.++-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 445544333221 2334578899999988888777654
No 178
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.013 Score=58.50 Aligned_cols=181 Identities=18% Similarity=0.185 Sum_probs=105.7
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEe-CCCCCHHHHHHHHHHHhccCCCCC--CChHHHHHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCV-SEDFDVKGLTRTILSSITKQTVDN--NDLNFLQEELKKQ 290 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-s~~~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~l~~~ 290 (883)
+.+++.++|.-|.|||.++++...... . +.++-|.+ .+..+...+...+...+..++.-. .-.+...+.|...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~-~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN-E---DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-C---CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 357999999999999999994443111 0 11222333 344567778888888887632211 1233334444444
Q ss_pred h-CCCc-EEEEEeCCCCCChhhHhhhcccccCCCCCc---EEEEeCCCh--------hHHHhcCCCcc-EeCCCCCHHhH
Q 047584 291 L-SRKK-FLLVLDDVWNENYTDWARLSLPFQAGAQGS---KIVVTTRNE--------EVAKIMSLDQA-YELKSLSTEDC 356 (883)
Q Consensus 291 L-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~ilvTTR~~--------~va~~~~~~~~-~~l~~L~~~~~ 356 (883)
. +++| ..+++||..+...+..+.++....-...++ +|+..-..+ .....-..... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 4677 999999998776666666554333222222 233333221 11111111123 89999999988
Q ss_pred HHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHh
Q 047584 357 LSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGG 399 (883)
Q Consensus 357 ~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 399 (883)
..++..+..+..... +---.+....|..+..|.|.+|..++.
T Consensus 206 ~~yl~~~Le~a~~~~-~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGLPE-PLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCCCc-ccCChhHHHHHHHHhccchHHHHHHHH
Confidence 888877654432111 111245677899999999999987663
No 179
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.009 Score=63.44 Aligned_cols=176 Identities=14% Similarity=0.083 Sum_probs=101.5
Q ss_pred hHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhcc-------CCeEEEEEeCCCCCHHHHHHHHHH
Q 047584 196 EKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH-------FDLKAWTCVSEDFDVKGLTRTILS 268 (883)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------F~~~~wv~~s~~~~~~~~~~~il~ 268 (883)
..+++.+.+..+. -...+.++|+.|+||+++|..+....--... -..+-++..+..+|+..+
T Consensus 11 ~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (319)
T PRK06090 11 VWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------ 79 (319)
T ss_pred HHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 3456666664332 3467889999999999999998752100000 000000111111111100
Q ss_pred HhccCC-CCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCCh-hH-HHhc
Q 047584 269 SITKQT-VDNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNE-EV-AKIM 340 (883)
Q Consensus 269 ~l~~~~-~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v-a~~~ 340 (883)
.+.. .....++++.. +.+.+ .+++=++|+|++..........+...+.....++.+|++|.+. .+ .+..
T Consensus 80 --~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 80 --KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred --ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000 01123333332 23332 2445588899998887778888877777766777776666553 33 3334
Q ss_pred CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 341 SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 341 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
+.-..+.+.+++.+++.+.+..... . .+..++..++|.|+.+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~-------~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQGI-------T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcCC-------c-----hHHHHHHHcCCCHHHHHHH
Confidence 4456899999999999988865311 0 1356789999999876544
No 180
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.28 E-value=0.0014 Score=75.68 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=40.4
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+++|-+..++++..++..... .....+++.|+|++|+||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999865422 2223468999999999999999999874
No 181
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.21 E-value=0.0051 Score=68.07 Aligned_cols=224 Identities=17% Similarity=0.168 Sum_probs=119.8
Q ss_pred EEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcE
Q 047584 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKF 296 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~ 296 (883)
++.|+|+-++||||+++.+... .... .+++..-+......-+.+. ...+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCCc
Confidence 9999999999999999666652 1111 4555443321111111111 1111121122788
Q ss_pred EEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhH-----HHh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCC
Q 047584 297 LLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEV-----AKI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDF 370 (883)
Q Consensus 297 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v-----a~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 370 (883)
.|+||.|... ..|......+.+..+. +|++|+-+... ++. .|....+.+.||+..|...+-...+
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~------ 167 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI------ 167 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc------
Confidence 9999999776 7899988888877666 88888877443 222 2345678999999998876543100
Q ss_pred CCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCCChHHHHHHHhcccccCCCCCCCchhHHHHhhcCCC-hhHHHHhhH
Q 047584 371 SSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREWKGVLSSKIWELPEDRCPIIPALAVSYYYLP-PILKQCFAY 449 (883)
Q Consensus 371 ~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~-~~~k~cf~~ 449 (883)
..... ...-+-.-..||.|-++..-...-. .......++.... .... ..-+ ..++..+.+
T Consensus 168 -~~~~~-~~~f~~Yl~~GGfP~~v~~~~~~~~---~~~~~~~~~~~Di-------------~~~~-~~~~~~~~k~i~~~ 228 (398)
T COG1373 168 -EPSKL-ELLFEKYLETGGFPESVKADLSEKK---LKEYLDTILKRDI-------------IERG-KIENADLMKRILRF 228 (398)
T ss_pred -chhHH-HHHHHHHHHhCCCcHHHhCcchhhH---HHHHHHHHHHHHH-------------HHHc-CcccHHHHHHHHHH
Confidence 00111 1122333457899977643321111 0111111111111 1111 0011 345555555
Q ss_pred hccCCCCceeCHHHHHHHHHhCCCCcCCCCCCChHHHHHHHHHHHHhcCcccc
Q 047584 450 CSLFPKDYEFDEEEIILLWCASGFLDHKESGNPNEDLGRKFFQELRSRSFFQQ 502 (883)
Q Consensus 450 ~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~~sllq~ 502 (883)
++..+ +..+.-..+.+.+- ....++...|++-|.+.-++..
T Consensus 229 l~~~~-g~~~s~~~la~~l~-----------~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 229 LASNI-GSPISYSSLARELK-----------GISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred HHhhc-CCccCHHHHHHHHh-----------ccchHHHHHHHHHHHHhhheEE
Confidence 55543 23455666655441 1125667778888877777764
No 182
>PRK08118 topology modulation protein; Reviewed
Probab=97.20 E-value=0.00058 Score=65.76 Aligned_cols=34 Identities=38% Similarity=0.637 Sum_probs=26.9
Q ss_pred EEEEEecCCchHHHHHHHHhcchhhh-ccCCeEEE
Q 047584 217 VIPIIGMGGLGKTTLAQLVYNDKRVQ-DHFDLKAW 250 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 250 (883)
.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999854332 45666665
No 183
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.19 E-value=0.0045 Score=59.26 Aligned_cols=139 Identities=15% Similarity=0.127 Sum_probs=78.4
Q ss_pred cchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhh------------------ccCCeEEEEEe
Q 047584 192 GRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ------------------DHFDLKAWTCV 253 (883)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~wv~~ 253 (883)
|-+...+.|.+.+.... -...+.++|+.|+||+++|..+.+..--. .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 45666777777775542 24568999999999999999987631111 11222333332
Q ss_pred CCC---CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEe
Q 047584 254 SED---FDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVT 330 (883)
Q Consensus 254 s~~---~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT 330 (883)
... ..++++. ++...+.... ..+++=++|+||+.....+.+..+...+......+++|++
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 2222221 2222222111 0235668899999988888888888888887788888888
Q ss_pred CCChh--HHHhcCCCccEeCCCCC
Q 047584 331 TRNEE--VAKIMSLDQAYELKSLS 352 (883)
Q Consensus 331 TR~~~--va~~~~~~~~~~l~~L~ 352 (883)
|.+.. ..+..+.-..+.+.+++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 87744 23333334556666553
No 184
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.017 Score=61.62 Aligned_cols=175 Identities=12% Similarity=0.060 Sum_probs=101.5
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCC---e-----EEEEEeCCCCCHHHHHHHHHH
Q 047584 197 KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD---L-----KAWTCVSEDFDVKGLTRTILS 268 (883)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~-----~~wv~~s~~~~~~~~~~~il~ 268 (883)
-+.|.+.+..+. -...+.+.|+.|+||+++|+.+....--..... | +-++..+..+|+..+
T Consensus 11 ~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 455666664432 245677999999999999999975311101000 0 001111111221111
Q ss_pred HhccCCCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCCh-hHH-HhcC
Q 047584 269 SITKQTVDNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNE-EVA-KIMS 341 (883)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~va-~~~~ 341 (883)
.+.......++++.+ +.+.+ .+++=++|+|++..........+...+.....++.+|++|.+. .+. +..+
T Consensus 80 --~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 80 --EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred --ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 000001122333332 22222 3556688899998888778888887787777777777777653 333 3333
Q ss_pred CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 342 LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 342 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
.-..+.+.+++.++..+.+...... . ...+...+..++|.|+.+
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~------~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSA------E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhcc------C---hHHHHHHHHHcCCCHHHH
Confidence 3468999999999999888765311 0 123566788899999644
No 185
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.17 E-value=0.003 Score=71.19 Aligned_cols=165 Identities=12% Similarity=0.159 Sum_probs=87.8
Q ss_pred cceecchhhHHHHHHHHcCCCC-------CCCCCceEEEEEecCCchHHHHHHHHhcchhhhcc-----CCeEEEEEeCC
Q 047584 188 AKVYGRETEKKEIVELLLKDDS-------RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH-----FDLKAWTCVSE 255 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s~ 255 (883)
.++.|.+..+++|.+.+.-+-. .+-...+-+.++|++|.|||++|+++++. .... +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 5688999999998887642100 01123456899999999999999999984 2222 12344555443
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH-hCCCcEEEEEeCCCCCC-------hhh-----HhhhcccccCC-
Q 047584 256 DFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQ-LSRKKFLLVLDDVWNEN-------YTD-----WARLSLPFQAG- 321 (883)
Q Consensus 256 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~-------~~~-----~~~l~~~l~~~- 321 (883)
. +++ ....+. ....+..+....++. -.+++++|+||++...- ..+ ...+...+...
T Consensus 260 ~----eLl----~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P----ELL----NKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h----hhc----ccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 2 111 110000 000011111122221 13578999999995320 011 11222222211
Q ss_pred -CCCcEEEEeCCChhHHH-h-cC---CCccEeCCCCCHHhHHHHHHhhh
Q 047584 322 -AQGSKIVVTTRNEEVAK-I-MS---LDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 322 -~~gs~ilvTTR~~~va~-~-~~---~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
..+..||.||-..+... . .. -...+.++..+.++..++|..+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13444555665433211 1 11 23458999999999999998875
No 186
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.13 E-value=6.1e-05 Score=84.06 Aligned_cols=84 Identities=23% Similarity=0.288 Sum_probs=50.2
Q ss_pred hhcCCCceeEEeeCCCCCCCcCccc-cCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhch--hhhcCcCC
Q 047584 596 KLLKLQRLRVFSLRGYCIPELPDSV-GDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLC--ADMGNLIK 672 (883)
Q Consensus 596 ~l~~l~~Lr~L~L~~~~~~~lp~~i-~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp--~~i~~L~~ 672 (883)
.+..|++|+.|||++|.+..+|..- ..+ +|+.|+|++|.++++ ..|.+|++|+.||+++ |.+.... ..++.|..
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~ 280 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGLDLSY-NLLSEHSELEPLWSLSS 280 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhccchhH-hhhhcchhhhHHHHHHH
Confidence 3346666777777777766665422 223 367777777766666 3466777777777776 3333221 12566667
Q ss_pred CCceecCCCC
Q 047584 673 LHHLKNSNTD 682 (883)
Q Consensus 673 L~~L~l~~~~ 682 (883)
|+.|+|.+|.
T Consensus 281 L~~L~LeGNP 290 (1096)
T KOG1859|consen 281 LIVLWLEGNP 290 (1096)
T ss_pred HHHHhhcCCc
Confidence 7777777765
No 187
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.13 E-value=0.0029 Score=70.13 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=87.1
Q ss_pred cceecchhhHHHHHHHHcCCCC-------CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS-------RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++.|.+..+++|.+.+.-.-. -+-...+-+.++|++|.|||++|+++++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 5678999999988887742100 01123456889999999999999999983 33333 222111
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hh---hHhhhcccccC--CCCC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN-----------YT---DWARLSLPFQA--GAQG 324 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~~g 324 (883)
++.. ... ......+...+.......+.+|+||++.... .+ ....+...+.. ...+
T Consensus 252 eL~~----k~~-----Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 ELIQ----KYL-----GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hhhh----hhc-----chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1111 110 0111112223333334678899999873210 00 01111111111 1235
Q ss_pred cEEEEeCCChhHHH-hc-C---CCccEeCCCCCHHhHHHHHHhhhc
Q 047584 325 SKIVVTTRNEEVAK-IM-S---LDQAYELKSLSTEDCLSVLAQHSL 365 (883)
Q Consensus 325 s~ilvTTR~~~va~-~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~ 365 (883)
.+||+||...+... .+ . ....+.+...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 67888887644332 22 1 235688999999999999987653
No 188
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.10 E-value=0.00079 Score=67.73 Aligned_cols=36 Identities=31% Similarity=0.340 Sum_probs=29.4
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEe
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCV 253 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 253 (883)
-.++|+|..|+|||||+..+.. .....|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3688999999999999999987 36678877766654
No 189
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.021 Score=61.50 Aligned_cols=177 Identities=14% Similarity=0.072 Sum_probs=102.8
Q ss_pred hHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC---Ce-----EEEEEeCCCCCHHHHHHHHH
Q 047584 196 EKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF---DL-----KAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~~s~~~~~~~~~~~il 267 (883)
.-+++.+.+..+. -..-+.+.|+.|+||+++|..++...--...- .| +-++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 3456777775432 34678899999999999999886531100000 00 011111111221111
Q ss_pred HHhccCCC-CCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC-hhHH-Hh
Q 047584 268 SSITKQTV-DNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN-EEVA-KI 339 (883)
Q Consensus 268 ~~l~~~~~-~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~va-~~ 339 (883)
.+... ....++++.+ +.+.+ .+++=++|+|++..........+...+.....++.+|++|.+ ..+. +.
T Consensus 80 ---~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL 155 (334)
T ss_pred ---ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 00000 1123344333 22222 356678999999888777777787777776667777666665 3344 33
Q ss_pred cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHH
Q 047584 340 MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAK 395 (883)
Q Consensus 340 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 395 (883)
.+.-+.+.+.+++.+++...+.... + .+ .+.+..++..++|.|..+.
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 3444678999999999988876532 1 01 2336788999999997543
No 190
>PRK08181 transposase; Validated
Probab=97.03 E-value=0.0017 Score=67.20 Aligned_cols=100 Identities=22% Similarity=0.153 Sum_probs=55.1
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
.-+.++|++|+|||.||.++.+. .....-.++|+++ .+++..+..... ..+.+.. +.. + .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~---l~~-l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESA---IAK-L-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHH---HHH-H-hcC
Confidence 45999999999999999999873 3333334556643 445554433211 1122222 222 2 244
Q ss_pred EEEEEeCCCCCChhhHh--hhcccccCCCCCcEEEEeCCC
Q 047584 296 FLLVLDDVWNENYTDWA--RLSLPFQAGAQGSKIVVTTRN 333 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~ilvTTR~ 333 (883)
=||||||+.......|. .+...+.....+..+||||..
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 59999999654333332 222222221112358888875
No 191
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.019 Score=62.56 Aligned_cols=150 Identities=18% Similarity=0.265 Sum_probs=89.6
Q ss_pred CCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh
Q 047584 212 DGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQL 291 (883)
Q Consensus 212 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L 291 (883)
...+.-+.+.|++|+|||+||..++. ...|+.+=-++-..-..+. +......+.....+..
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~s---------------EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLS---------------ESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCcc---------------HHHHHHHHHHHHHHhh
Confidence 34567788999999999999999986 3567654333211111111 1111223344455566
Q ss_pred CCCcEEEEEeCCCCCChhhHhhhcccc---------------cCCCCCcEEEEeCCChhHHHhcCC----CccEeCCCCC
Q 047584 292 SRKKFLLVLDDVWNENYTDWARLSLPF---------------QAGAQGSKIVVTTRNEEVAKIMSL----DQAYELKSLS 352 (883)
Q Consensus 292 ~~kr~LlVlDdv~~~~~~~~~~l~~~l---------------~~~~~gs~ilvTTR~~~va~~~~~----~~~~~l~~L~ 352 (883)
++.--.||+||+.. .-+|..+...| |+.+..--|+-||....+...|+- ...|.++.++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 77788999999933 34554433322 222222335557777788777653 3578899888
Q ss_pred H-HhHHHHHHhhh-cCCCCCCCCccHHHHHHHHHHhcC
Q 047584 353 T-EDCLSVLAQHS-LETTDFSSHKSLEEIGKEIVIKCN 388 (883)
Q Consensus 353 ~-~~~~~Lf~~~a-~~~~~~~~~~~l~~~~~~I~~~c~ 388 (883)
. ++..+.+...- |. +...+.++.+...+|-
T Consensus 674 ~~~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~~ 705 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFS------DDEVRAIAEQLLSKKV 705 (744)
T ss_pred chHHHHHHHHHccCCC------cchhHHHHHHHhcccc
Confidence 7 67777776542 22 3345666777777773
No 192
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.02 E-value=0.016 Score=66.66 Aligned_cols=178 Identities=13% Similarity=0.189 Sum_probs=93.6
Q ss_pred cceecchhhHHHHHHHHc---CCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLL---KDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
.+++|.+..++++.+++. .... .+....+-+.++|++|.|||+||+.+++. .... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----HH
Confidence 678898887766655443 2110 01123456889999999999999999873 2222 233321 11
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhhHhh----hccccc--CCCCCc
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN----------YTDWAR----LSLPFQ--AGAQGS 325 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~--~~~~gs 325 (883)
+.. ... ......+...+.......+.+|+|||+.... ...+.. +...+. ....+-
T Consensus 124 ~~~----~~~-----g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FVE----MFV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHH----HHh-----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 111 110 0112233344444445678999999994321 011111 111111 112344
Q ss_pred EEEEeCCChh-HHHhc----CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCC
Q 047584 326 KIVVTTRNEE-VAKIM----SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGL 390 (883)
Q Consensus 326 ~ilvTTR~~~-va~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl 390 (883)
.||.||.... +-..+ .-...+.++..+.++-.++|..+...... .. ......+++.+.|.
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~----~~~l~~la~~t~G~ 259 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-AP----DVDLKAVARRTPGF 259 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Cc----chhHHHHHHhCCCC
Confidence 5666665533 22211 12356888988888888888876533211 11 12245778888774
No 193
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.01 E-value=0.0013 Score=64.04 Aligned_cols=99 Identities=22% Similarity=0.291 Sum_probs=51.8
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
.-+.|+|..|+|||.||.++.+. ...+=-.+.|+++ .+++..+ .... .....+.. +.. +. +-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~~l----~~~~-~~~~~~~~---~~~-l~-~~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLDEL----KQSR-SDGSYEEL---LKR-LK-RV 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHHHH----HCCH-CCTTHCHH---HHH-HH-TS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceeccc----cccc-cccchhhh---cCc-cc-cc
Confidence 56999999999999999999874 2222224566653 3444443 2221 12222222 222 22 34
Q ss_pred EEEEEeCCCCCChhhHhh--hcccccCC-CCCcEEEEeCCC
Q 047584 296 FLLVLDDVWNENYTDWAR--LSLPFQAG-AQGSKIVVTTRN 333 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTTR~ 333 (883)
=||||||+......+|.. +...+... .++ .+||||..
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 578899997765555543 11111111 123 47888865
No 194
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.01 E-value=0.0049 Score=67.91 Aligned_cols=179 Identities=14% Similarity=0.164 Sum_probs=95.3
Q ss_pred cceecchhhHHHHHHHHcCC----C---CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKD----D---SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++.|.+..+++|.+.+..+ + ..+-...+-+.++|++|.|||+||+++++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 57889999998888766321 0 001123577899999999999999999983 22222 22211 1
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhh----HhhhcccccC--CCCC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN----------YTD----WARLSLPFQA--GAQG 324 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~g 324 (883)
.+. ....+ .....+...+.......+.+|++|++...- ... +..+...+.. ...+
T Consensus 214 ~l~----~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EFV----QKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHH----HHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 111 11110 111222233333345678999999974310 001 1122222211 1235
Q ss_pred cEEEEeCCChhHH-Hh-cC---CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh
Q 047584 325 SKIVVTTRNEEVA-KI-MS---LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 325 s~ilvTTR~~~va-~~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 391 (883)
..||+||...+.. .. .. -...+.++..+.++...+|........ .....+ ..++++.+.|+-
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccC----HHHHHHHcCCCC
Confidence 6688888754332 21 22 234688888888888888876543221 111222 345566666653
No 195
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.00 E-value=0.0034 Score=66.62 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=70.2
Q ss_pred cchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 047584 192 GRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSIT 271 (883)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 271 (883)
+|....+...+++..-.. ....+-+.|+|..|+|||.||.++++. ....-..+.++++ ..++.++-....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH------HHHHHHHHHHHh
Confidence 444445555566543211 113467999999999999999999984 3222233556654 345555544432
Q ss_pred cCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhh--hcccc-cCC-CCCcEEEEeCCC
Q 047584 272 KQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWAR--LSLPF-QAG-AQGSKIVVTTRN 333 (883)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~ilvTTR~ 333 (883)
. .+.. ..+.. + .+-=||||||+..+....|.. +...+ ... ..+-.+|+||--
T Consensus 205 ~-----~~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 1122 22322 2 356689999998776677764 43333 222 234557888864
No 196
>CHL00176 ftsH cell division protein; Validated
Probab=97.00 E-value=0.0091 Score=69.73 Aligned_cols=177 Identities=17% Similarity=0.233 Sum_probs=96.5
Q ss_pred cceecchhhHHHHHHH---HcCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVEL---LLKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
.++.|.++.++++.+. +..... -+....+-+.++|++|.|||+||+++++. ... -|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~-----p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEV-----PFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC-----CeeeccHH----H
Confidence 5688888776665444 332211 01123456899999999999999999873 221 22333211 1
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhh----HhhhcccccC--CCCCc
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN----------YTD----WARLSLPFQA--GAQGS 325 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~gs 325 (883)
+.. ... ......+...+.+.....+++|++||+.... ... +..+...+.. ...+-
T Consensus 252 f~~----~~~-----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVE----MFV-----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHH----Hhh-----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 111 000 0111223344555556788999999994321 111 1222222211 23455
Q ss_pred EEEEeCCChhHHH-hc-C---CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCC
Q 047584 326 KIVVTTRNEEVAK-IM-S---LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNG 389 (883)
Q Consensus 326 ~ilvTTR~~~va~-~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G 389 (883)
.||.||...+... .+ . -...+.++..+.++-.++++.++-... .........+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-----~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-----LSPDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-----cchhHHHHHHHhcCCC
Confidence 6777776643322 21 1 235688888899998888887764311 1112345677888877
No 197
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.97 E-value=0.018 Score=60.13 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHH
Q 047584 197 KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLT 263 (883)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 263 (883)
++++..++... .-|.+.|++|+|||+||+.+.+ .... ..+.+++....+..+++
T Consensus 11 ~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 11 TSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 45555555432 3466899999999999999986 2222 24556666655555544
No 198
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.97 E-value=0.00025 Score=70.18 Aligned_cols=220 Identities=20% Similarity=0.188 Sum_probs=118.5
Q ss_pred hcCCCceeEEeeCCCCCCC-----cCccccCCCcccEEeccCCCcc----ccc-------cccccCCCccEEecCCCCch
Q 047584 597 LLKLQRLRVFSLRGYCIPE-----LPDSVGDLRYLRYLNLSGTVIR----SLP-------ESVNKLYNLHSLLLEDCDRL 660 (883)
Q Consensus 597 l~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~~~i~----~lp-------~~i~~l~~L~~L~l~~c~~l 660 (883)
+..+..+..++||||.|.. +...|.+-.+|+..+++.-... ++| +.+-+|++|+..+|+.|-.-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3357788999999998753 4556677888999988763211 333 44568999999999997554
Q ss_pred hhchh----hhcCcCCCCceecCCCCCccccC-ccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCC
Q 047584 661 KKLCA----DMGNLIKLHHLKNSNTDSLEEMP-LGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVK 735 (883)
Q Consensus 661 ~~lp~----~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~ 735 (883)
...|. .|++-+.|.||.+++|. +..+. ..|+ +.|++|.. .+...+-+.|+ . -+++-.+..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rig--kal~~la~----------nKKaa~kp~Le-~-vicgrNRle 170 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIG--KALFHLAY----------NKKAADKPKLE-V-VICGRNRLE 170 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCccchhHHH--HHHHHHHH----------HhhhccCCCce-E-EEeccchhc
Confidence 44443 46788999999999886 44321 1122 12333310 01111222232 1 111111111
Q ss_pred C-ccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCC---------CCcCCCc
Q 047584 736 C-VGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMK---------FPTWLGD 805 (883)
Q Consensus 736 ~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~---------~p~~~~~ 805 (883)
+ ........+....+|+.+.+..|... ......-.+..+..+.+|+.|+|+.|.++. +|.|
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIr------pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W--- 241 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIR------PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW--- 241 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcC------cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc---
Confidence 1 11122223334456777777664211 001122234455566777777777776553 3443
Q ss_pred CCCCCeeEEEEecCCCCCC-----CCCC--CCcCcccceeccCcc
Q 047584 806 SLFSNLVTLKFENCGICTA-----LPSV--GQLPSLKHLVVCGMS 843 (883)
Q Consensus 806 ~~l~~L~~L~L~~~~~~~~-----l~~l--~~lp~L~~L~L~~~~ 843 (883)
++|+.|.+..|-.... +..+ -..|+|..|...+|.
T Consensus 242 ---~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 242 ---NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred ---chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 3467777777743211 1111 125666666666553
No 199
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.92 E-value=0.0018 Score=63.72 Aligned_cols=131 Identities=20% Similarity=0.237 Sum_probs=65.6
Q ss_pred cchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCC----CC-----CHHHH
Q 047584 192 GRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSE----DF-----DVKGL 262 (883)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~----~~-----~~~~~ 262 (883)
.+..+....++.|.. ..++.+.|++|.|||.||.+..-+.-..+.|+.++++.-.- .. +..+-
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 455666777788863 35899999999999999998887654567888887764211 10 11110
Q ss_pred ----HHHHHHHhccCCCCCCChHHHHHH------HHHHhCCC---cEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEE
Q 047584 263 ----TRTILSSITKQTVDNNDLNFLQEE------LKKQLSRK---KFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVV 329 (883)
Q Consensus 263 ----~~~il~~l~~~~~~~~~~~~~~~~------l~~~L~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 329 (883)
+.-+...+..- ......+.+... -..+++++ ..+||+|++.+....++..+... .+.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~-~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEEL-FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTT-S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEE
T ss_pred HHHHHHHHHHHHHHH-hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEE
Confidence 01111111100 011122222110 00233454 47999999998877777776554 357899999
Q ss_pred eCCCh
Q 047584 330 TTRNE 334 (883)
Q Consensus 330 TTR~~ 334 (883)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 87553
No 200
>PRK06526 transposase; Provisional
Probab=96.92 E-value=0.0019 Score=66.58 Aligned_cols=99 Identities=21% Similarity=0.176 Sum_probs=52.2
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
.-+.|+|++|+|||+||..+.+.. ....+ .+.|+ +..++...+..... ... ....+.+. .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a-~~~g~-~v~f~------t~~~l~~~l~~~~~-----~~~---~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA-CQAGH-RVLFA------TAAQWVARLAAAHH-----AGR---LQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH-HHCCC-chhhh------hHHHHHHHHHHHHh-----cCc---HHHHHHHh--ccC
Confidence 468999999999999999998732 12222 23333 33444444432211 111 22233332 245
Q ss_pred EEEEEeCCCCCChhhHh--hhcccccC-CCCCcEEEEeCCC
Q 047584 296 FLLVLDDVWNENYTDWA--RLSLPFQA-GAQGSKIVVTTRN 333 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~ilvTTR~ 333 (883)
-+||+||+.......+. .+...+.. ...++ +|+||..
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~ 200 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNK 200 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCC
Confidence 68999999654322222 22222221 12344 8888875
No 201
>PRK09183 transposase/IS protein; Provisional
Probab=96.92 E-value=0.0033 Score=65.30 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=52.3
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
..+.|+|++|+|||+||..+.+.. ...-..+.+++ ..++...+...... .. +...+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a--~~~G~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA--VRAGIKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 467899999999999999997632 22212333443 23343333222111 11 222333322 345
Q ss_pred EEEEEeCCCCCChhhHh--hhcccccCC-CCCcEEEEeCCC
Q 047584 296 FLLVLDDVWNENYTDWA--RLSLPFQAG-AQGSKIVVTTRN 333 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTTR~ 333 (883)
-++|+||+.......+. .+...+... ..++ +|+||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 69999999754333332 222222211 2344 7888865
No 202
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.92 E-value=0.00079 Score=71.62 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=43.8
Q ss_pred CcccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcch
Q 047584 185 LVEAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDK 239 (883)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 239 (883)
+.+..++|.++.++++++++...........+++.++|++|+||||||+.+.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3345799999999999999976432123356899999999999999999998743
No 203
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.91 E-value=0.0043 Score=68.59 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=36.7
Q ss_pred ceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 189 KVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.++||++.++.+...+..+. -|.|.|++|+|||+||+.+...
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 48999999999998887653 4899999999999999999873
No 204
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.025 Score=60.79 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=64.8
Q ss_pred CCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC-hhHH-HhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCC
Q 047584 293 RKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN-EEVA-KIMSLDQAYELKSLSTEDCLSVLAQHSLETTDF 370 (883)
Q Consensus 293 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~va-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 370 (883)
+++=++|+|++.......+..+...+....+++.+|++|.+ ..+- +..+.-..+.+.+++.++..+.+.....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~----- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV----- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC-----
Confidence 44558889999988888888888888777777766655554 4443 3333346899999999999988876421
Q ss_pred CCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 371 SSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 371 ~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
.+ ...++..++|.|..+..+
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999755444
No 205
>PRK06921 hypothetical protein; Provisional
Probab=96.84 E-value=0.004 Score=64.81 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=54.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhcc-CCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDH-FDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSR 293 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~ 293 (883)
...+.++|..|+|||+||.++++. +... -..+++++. .+++..+...+ +.....+.. + .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~-~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNR-M-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH------HHHHHHHHHHH----------HHHHHHHHH-h-c
Confidence 467899999999999999999984 3333 344667664 22333332211 111122222 2 2
Q ss_pred CcEEEEEeCCCC-----CChhhHhh--hcccccCC-CCCcEEEEeCCC
Q 047584 294 KKFLLVLDDVWN-----ENYTDWAR--LSLPFQAG-AQGSKIVVTTRN 333 (883)
Q Consensus 294 kr~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~ilvTTR~ 333 (883)
+-=||||||+.. +...+|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 456999999932 22234443 33222221 124457888864
No 206
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.84 E-value=0.0011 Score=63.08 Aligned_cols=96 Identities=23% Similarity=0.309 Sum_probs=69.8
Q ss_pred HHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCC--CCCCCCCCCcCcccceeccCcccceecCC
Q 047584 773 EMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGI--CTALPSVGQLPSLKHLVVCGMSSVRRLDP 850 (883)
Q Consensus 773 ~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~--~~~l~~l~~lp~L~~L~L~~~~~l~~i~~ 850 (883)
+...+..++.++.|..|.+++|.++.+-.-+.. .+++|+.|.|.+|.. +.++..+..+|.|++|.+-+|+--..-.-
T Consensus 53 dl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~-~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~Y 131 (233)
T KOG1644|consen 53 DLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT-FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNY 131 (233)
T ss_pred chhhcccCCCccccceEEecCCcceeeccchhh-hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCc
Confidence 444667788889999999999999887655543 478999999999976 45677889999999999988842221111
Q ss_pred CccCCCCCCCCCCcceeecccc
Q 047584 851 EFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 851 ~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
..+- .-.+|+|+.|++.+-
T Consensus 132 R~yv---l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 132 RLYV---LYKLPSLRTLDFQKV 150 (233)
T ss_pred eeEE---EEecCcceEeehhhh
Confidence 1110 134899999998764
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.84 E-value=0.0041 Score=75.50 Aligned_cols=124 Identities=17% Similarity=0.185 Sum_probs=70.0
Q ss_pred cceecchhhHHHHHHHHcCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
..++|-+..++.+.+.+..... .......++.++|+.|+|||.||+.+... .-+.....+-++++...+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh-----
Confidence 5799999999999998854211 12234568899999999999999988763 2111122222333221111
Q ss_pred HHHHHhccCCC---CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCC
Q 047584 265 TILSSITKQTV---DNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAG 321 (883)
Q Consensus 265 ~il~~l~~~~~---~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 321 (883)
.-...+.+.++ +......+...+++ ...-+|+||++...+...++.+...+..+
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g 695 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKG 695 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcc
Confidence 11112222211 11122223333332 45679999999777766676666555443
No 208
>PRK04296 thymidine kinase; Provisional
Probab=96.82 E-value=0.003 Score=62.33 Aligned_cols=113 Identities=12% Similarity=-0.024 Sum_probs=62.6
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCC--CCCChHHHHHHHHHHhCC
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTV--DNNDLNFLQEELKKQLSR 293 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~L~~ 293 (883)
.++.|+|..|.||||+|..+.. +...+-..++.+. ..++.......++.+++.... .....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 5788999999999999988887 3333333344342 212222223334444432111 11233444445544 333
Q ss_pred CcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChh
Q 047584 294 KKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEE 335 (883)
Q Consensus 294 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 335 (883)
+.-+||+|.+.--+.++...+...+. ..|..||+|.+..+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 45589999996543333333333322 35778999988743
No 209
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.82 E-value=0.0046 Score=62.32 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=37.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
+.-+++.|+|++|+|||++|.++... ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 34689999999999999999998863 334456789999876 66655544
No 210
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.82 E-value=0.0059 Score=74.73 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=71.4
Q ss_pred cceecchhhHHHHHHHHcCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
..++|.+..++.+.+.+..... .......++.++|+.|+|||++|+.+... ....-...+.++++...+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 4689999999999998865311 01122467889999999999999999873 2111223344555443221111
Q ss_pred HHHHHhccCCCC---CCChHHHHHHHHHHhCCC-cEEEEEeCCCCCChhhHhhhcccccC
Q 047584 265 TILSSITKQTVD---NNDLNFLQEELKKQLSRK-KFLLVLDDVWNENYTDWARLSLPFQA 320 (883)
Q Consensus 265 ~il~~l~~~~~~---~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~ 320 (883)
..+.+.+++ ...... +.+.++.+ ..+|+||++...+...+..+...+..
T Consensus 641 ---~~l~g~~~g~~g~~~~g~----l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~ 693 (852)
T TIGR03346 641 ---ARLIGAPPGYVGYEEGGQ----LTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDD 693 (852)
T ss_pred ---HHhcCCCCCccCcccccH----HHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhc
Confidence 112111111 111222 33333333 34899999988887778777766644
No 211
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.80 E-value=0.0079 Score=64.44 Aligned_cols=102 Identities=21% Similarity=0.200 Sum_probs=65.1
Q ss_pred hHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCe-EEEEEeCCC-CCHHHHHHHHHHHhccC
Q 047584 196 EKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDL-KAWTCVSED-FDVKGLTRTILSSITKQ 273 (883)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~-~~~~~~~~~il~~l~~~ 273 (883)
-..++++.+..-. +-.-+.|+|.+|+|||||++.+.+.. ..++-+. ++|+.+.+. ..+.++.+.+...+...
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i-~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAV-AANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 3455788776432 23456999999999999999998742 1222344 467777655 46788888888777654
Q ss_pred CCCCCChHH-----HHHHHHHHh--CCCcEEEEEeCC
Q 047584 274 TVDNNDLNF-----LQEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 274 ~~~~~~~~~-----~~~~l~~~L--~~kr~LlVlDdv 303 (883)
..+...... ....+.+++ ++++.+||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 433222221 112222333 589999999998
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.78 E-value=0.0062 Score=62.16 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=57.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRK 294 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~k 294 (883)
...+.++|.+|+|||+||.++++. ....-..+++++ +.+++..+-..... ...+.+ .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 357899999999999999999984 333333455554 34444444333211 111122 2333344 4
Q ss_pred cEEEEEeCCCCCChhhHhh--hcccccCC-CCCcEEEEeCCC
Q 047584 295 KFLLVLDDVWNENYTDWAR--LSLPFQAG-AQGSKIVVTTRN 333 (883)
Q Consensus 295 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTTR~ 333 (883)
.=+|||||+......+|.. +...+... ...-.+||||-.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 5588899997765566654 22222211 112347777754
No 213
>PRK07261 topology modulation protein; Provisional
Probab=96.76 E-value=0.0031 Score=61.08 Aligned_cols=66 Identities=23% Similarity=0.320 Sum_probs=40.2
Q ss_pred EEEEEecCCchHHHHHHHHhcchhh-hccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYNDKRV-QDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
.|.|+|++|+||||||+++.....+ .-+.|...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 4899999999999999999763221 123344444211 112233455556666676666
Q ss_pred EEEEEeCCCC
Q 047584 296 FLLVLDDVWN 305 (883)
Q Consensus 296 ~LlVlDdv~~ 305 (883)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 57787743
No 214
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.74 E-value=0.0019 Score=61.53 Aligned_cols=98 Identities=22% Similarity=0.298 Sum_probs=70.0
Q ss_pred CCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccc-cCCCccEEecCCCCchhhch--hhhcCcCCCCce
Q 047584 600 LQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVN-KLYNLHSLLLEDCDRLKKLC--ADMGNLIKLHHL 676 (883)
Q Consensus 600 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~l~~c~~l~~lp--~~i~~L~~L~~L 676 (883)
+.....+||++|.+..++ .+..+..|.+|.|.+|+|+.+-+.+. .+++|++|.|.+ |.+.++- ..+..+++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCcccee
Confidence 455678899999887764 56788899999999999998866555 567799999998 5565553 236678889999
Q ss_pred ecCCCCCccccCc----cCCCCCCCCcc
Q 047584 677 KNSNTDSLEEMPL----GIVRLTCLQTL 700 (883)
Q Consensus 677 ~l~~~~~~~~~p~----~i~~L~~L~~L 700 (883)
.+-+|. ...-+. -+.++++|++|
T Consensus 119 tll~Np-v~~k~~YR~yvl~klp~l~~L 145 (233)
T KOG1644|consen 119 TLLGNP-VEHKKNYRLYVLYKLPSLRTL 145 (233)
T ss_pred eecCCc-hhcccCceeEEEEecCcceEe
Confidence 888876 332221 14455556655
No 215
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.71 E-value=0.0082 Score=61.28 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=35.4
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGL 262 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 262 (883)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4589999999999999999999874 33344678999887 5555444
No 216
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.71 E-value=0.0069 Score=73.82 Aligned_cols=125 Identities=17% Similarity=0.186 Sum_probs=69.6
Q ss_pred cceecchhhHHHHHHHHcCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
..++|.+..++.+...+..... ..+....++.++|+.|+|||+||+.+++. ....-...+.+.++.... .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 4689999999999888864210 01122357889999999999999999863 211112334444443211 1
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhCCC-cEEEEEeCCCCCChhhHhhhcccccC
Q 047584 265 TILSSITKQTVDNNDLNFLQEELKKQLSRK-KFLLVLDDVWNENYTDWARLSLPFQA 320 (883)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~ 320 (883)
.....+.+.++.....+. ...+.+.++.+ .-+|+|||+...+...+..+...+..
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 112222222211111000 11233333323 36999999987777777777665543
No 217
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.67 E-value=0.056 Score=58.58 Aligned_cols=207 Identities=15% Similarity=0.168 Sum_probs=122.5
Q ss_pred chhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHH-HHHhcchhhhccCCeEEEEEeCCC---CCHHHHHHHHHH
Q 047584 193 RETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLA-QLVYNDKRVQDHFDLKAWTCVSED---FDVKGLTRTILS 268 (883)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~il~ 268 (883)
|.+..++|..||.... -..|.|.|+-|+||+.|+ .++..+.+ .++.+.+.+- .+-..+...++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 5677899999997653 369999999999999999 77765422 2444444321 122233333333
Q ss_pred Hhc-----------------------cCCCC-CCCh-HHHH-------HHHHH-------------------Hh---CCC
Q 047584 269 SIT-----------------------KQTVD-NNDL-NFLQ-------EELKK-------------------QL---SRK 294 (883)
Q Consensus 269 ~l~-----------------------~~~~~-~~~~-~~~~-------~~l~~-------------------~L---~~k 294 (883)
+++ ++..+ ..+. .++. ..|++ +| ..+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 332 22211 1111 1111 11222 11 123
Q ss_pred cEEEEEeCCCCCCh---------hhHhhhcccccCCCCCcEEEEeCCChhHHH----hcC--CCccEeCCCCCHHhHHHH
Q 047584 295 KFLLVLDDVWNENY---------TDWARLSLPFQAGAQGSKIVVTTRNEEVAK----IMS--LDQAYELKSLSTEDCLSV 359 (883)
Q Consensus 295 r~LlVlDdv~~~~~---------~~~~~l~~~l~~~~~gs~ilvTTR~~~va~----~~~--~~~~~~l~~L~~~~~~~L 359 (883)
|-+||+|+.-.... .+|..... ..+=.+||++|-+..... .+. ..+.+.|...+.+.|..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 68999999854321 34544221 234567898887755444 332 235688999999999999
Q ss_pred HHhhhcCCCCC------------CC----CccHHHHHHHHHHhcCCChHHHHHHHhhhcCCCChH-HHHHHHh
Q 047584 360 LAQHSLETTDF------------SS----HKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKR-EWKGVLS 415 (883)
Q Consensus 360 f~~~a~~~~~~------------~~----~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~-~w~~~~~ 415 (883)
...+.-..... .. ......-....++..||=-.-+..+++.++...++. .-..+.+
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 98876443110 00 012344466788999999999999999999876633 3344443
No 218
>PRK12377 putative replication protein; Provisional
Probab=96.66 E-value=0.0038 Score=63.89 Aligned_cols=101 Identities=20% Similarity=0.116 Sum_probs=56.5
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
..+.|+|.+|+|||+||.++++. .....-.++++++. +++..+-..... ...... +.+.+ .+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cCC
Confidence 57899999999999999999984 33344445666543 444444333221 111111 22222 456
Q ss_pred EEEEEeCCCCCChhhHhh--hcccccCC-CCCcEEEEeCCC
Q 047584 296 FLLVLDDVWNENYTDWAR--LSLPFQAG-AQGSKIVVTTRN 333 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTTR~ 333 (883)
-||||||+.......|.. +...+... .+.--+||||-.
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 789999996554444543 22222221 112236777754
No 219
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.019 Score=59.85 Aligned_cols=189 Identities=16% Similarity=0.152 Sum_probs=102.9
Q ss_pred cceecchhhHHHHHHHHcCCCC-------CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS-------RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
..+=|-++.+++|.+.+.-+-. -+-..++-|.++|++|.|||-||++|++ +....| +.|...
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH----
Confidence 4566889999988887743211 1234467899999999999999999999 444444 433331
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhC-CCcEEEEEeCCCCCC-----------hh---hHhhhcccccCC--CC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLS-RKKFLLVLDDVWNEN-----------YT---DWARLSLPFQAG--AQ 323 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~~--~~ 323 (883)
++++..-+.. ..+...+.+.-+ ..+.+|++|.+.... .+ ..-++...+... ..
T Consensus 220 ----ElVqKYiGEG------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ----ELVQKYIGEG------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ----HHHHHHhccc------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 2222222111 123344444444 458999999884311 00 111222222211 23
Q ss_pred CcEEEEeCCChhHHHh--cCC---CccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh----HHH
Q 047584 324 GSKIVVTTRNEEVAKI--MSL---DQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP----LAA 394 (883)
Q Consensus 324 gs~ilvTTR~~~va~~--~~~---~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP----Lai 394 (883)
.-|||..|-..++... +.+ .+.++++.-+.+.-.++|.-++-...- ...-+ .+.|++.|.|.- -|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-~~dvd----~e~la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-ADDVD----LELLARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-ccCcC----HHHHHHhcCCCchHHHHHH
Confidence 4688888866554332 222 356777755555566677766543321 11222 345666666654 344
Q ss_pred HHHHhhhc
Q 047584 395 KTLGGLLH 402 (883)
Q Consensus 395 ~~~~~~l~ 402 (883)
.+=|++++
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 45555543
No 220
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.60 E-value=0.014 Score=59.53 Aligned_cols=88 Identities=17% Similarity=0.066 Sum_probs=54.7
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccC------CeEEEEEeCCCCCHHHHHHHHHHHhccCC---------CCCC
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF------DLKAWTCVSEDFDVKGLTRTILSSITKQT---------VDNN 278 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~il~~l~~~~---------~~~~ 278 (883)
.-.++.|+|.+|+|||+||.+++.. ....- ..++|++....++...+. ++.+...... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 4579999999999999999998763 22222 467899988777765543 3333321110 1123
Q ss_pred ChHHHHHHHHHHhC----CCcEEEEEeCCC
Q 047584 279 DLNFLQEELKKQLS----RKKFLLVLDDVW 304 (883)
Q Consensus 279 ~~~~~~~~l~~~L~----~kr~LlVlDdv~ 304 (883)
+.+++...+.+... .+.-++|+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 45555555554432 345588888874
No 221
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.57 E-value=0.012 Score=71.02 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=70.4
Q ss_pred cceecchhhHHHHHHHHcCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
..++|-+..++.|.+.+..... .......++.++|+.|+|||+||+.++.. . +...+.++.++..+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 4688999999998888764211 01123457889999999999999999873 2 23345555554322111
Q ss_pred HHHHHhccCC--CCCCChHHHHHHHHHHhCCC-cEEEEEeCCCCCChhhHhhhcccccC
Q 047584 265 TILSSITKQT--VDNNDLNFLQEELKKQLSRK-KFLLVLDDVWNENYTDWARLSLPFQA 320 (883)
Q Consensus 265 ~il~~l~~~~--~~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~ 320 (883)
+...++... .+..... .+.+.++.+ .-+++||++...+.+.+..+...+..
T Consensus 526 -~~~lig~~~gyvg~~~~~----~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGG----LLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -HHHHhcCCCCCcccchhh----HHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 111122111 1111222 233344333 45999999988777777777665543
No 222
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.52 E-value=0.013 Score=57.46 Aligned_cols=119 Identities=23% Similarity=0.259 Sum_probs=68.9
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
..++|-|..++.|++--..=- ..-...-|.++|.-|.|||.|++++.+ ++....-. -|.|.+. ++
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~----dl----- 124 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE----DL----- 124 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH----HH-----
Confidence 679999999988875432200 011234588999999999999999998 44444433 2333221 00
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCC-CChhhHhhhcccccCC---CCCcEEEEeCCC
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWN-ENYTDWARLSLPFQAG---AQGSKIVVTTRN 333 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~ilvTTR~ 333 (883)
.++..+.+.|+. ..+||+|..||+.- ++...+..++..+..+ .+...++..|.+
T Consensus 125 ----------~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 ----------ATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ----------hhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 111112222221 35799999999953 3335567777776543 233344545544
No 223
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0074 Score=70.39 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=75.9
Q ss_pred cceecchhhHHHHHHHHcCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC---CeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF---DLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~ 261 (883)
..++|-+..++.+.+.+..... .......+...+|+.|||||-||++++.. -| +..+-+..| +
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMS------E 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMS------E 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechH------H
Confidence 5799999999999988864321 12334567888999999999999999862 23 233333333 3
Q ss_pred HHHH-HHHHhccCCCCCCChHHHHHHHHHHhCCCcE-EEEEeCCCCCChhhHhhhcccccCC
Q 047584 262 LTRT-ILSSITKQTVDNNDLNFLQEELKKQLSRKKF-LLVLDDVWNENYTDWARLSLPFQAG 321 (883)
Q Consensus 262 ~~~~-il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 321 (883)
.... -+..|.+.+++----++ ...|.+..+.++| +|.||++...+++..+.+...|.++
T Consensus 560 y~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 2221 12223333322111111 2346666677877 8889999877777777777666554
No 224
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.52 E-value=0.029 Score=54.71 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=36.3
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhc
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.++||-++.++++.-...+. ..+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHH
Confidence 57999999999887766443 357789999999999998877776
No 225
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.51 E-value=0.0046 Score=60.38 Aligned_cols=36 Identities=33% Similarity=0.478 Sum_probs=28.5
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEE
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWT 251 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 251 (883)
...+|.++|+.|+||||+|+.++. +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 346999999999999999999997 455556555555
No 226
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.48 E-value=0.012 Score=71.98 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=70.3
Q ss_pred cceecchhhHHHHHHHHcCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
..++|-+..++.|.+.+..... .......++.++|+.|+|||+||+.+... .-..-...+-+..+...+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHH-
Confidence 5789999999999888853211 01222456778999999999999999862 21111233444444332211111
Q ss_pred HHHHHhccCC--CCCCChHHHHHHHHHHhCCCc-EEEEEeCCCCCChhhHhhhcccccC
Q 047584 265 TILSSITKQT--VDNNDLNFLQEELKKQLSRKK-FLLVLDDVWNENYTDWARLSLPFQA 320 (883)
Q Consensus 265 ~il~~l~~~~--~~~~~~~~~~~~l~~~L~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~ 320 (883)
..++.++ .+..... .+.+.+..++ -+++||++...+.+.+..+...+..
T Consensus 586 ---~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 586 ---KLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred ---HhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 1122111 1111222 2344444454 5889999988777777777666654
No 227
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.47 E-value=0.002 Score=58.44 Aligned_cols=22 Identities=45% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
||.|+|++|+||||+|+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 228
>PRK04132 replication factor C small subunit; Provisional
Probab=96.46 E-value=0.067 Score=64.02 Aligned_cols=155 Identities=13% Similarity=0.040 Sum_probs=96.1
Q ss_pred Ee--cCCchHHHHHHHHhcchhhhccC-CeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEE
Q 047584 221 IG--MGGLGKTTLAQLVYNDKRVQDHF-DLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFL 297 (883)
Q Consensus 221 ~G--~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~L 297 (883)
.| |.++||||+|..++++. ....+ ...+-++++....... .++++..+...... -..+.-+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~--------------~~~~~KV 633 (846)
T PRK04132 570 GGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINV-IREKVKEFARTKPI--------------GGASFKI 633 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc--------------CCCCCEE
Confidence 37 78899999999999842 12222 2356677776544443 33444333211000 0124579
Q ss_pred EEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC-hhHHHh-cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCcc
Q 047584 298 LVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN-EEVAKI-MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKS 375 (883)
Q Consensus 298 lVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~ 375 (883)
+|+|++..........+...+.......++|++|.+ ..+... .+....+++.+++.++....+...+-... ...
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i--- 709 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LEL--- 709 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCC---
Confidence 999999988777777777777654455666665544 333322 23346899999999998887776543211 111
Q ss_pred HHHHHHHHHHhcCCChHHHH
Q 047584 376 LEEIGKEIVIKCNGLPLAAK 395 (883)
Q Consensus 376 l~~~~~~I~~~c~GlPLai~ 395 (883)
-++....|++.|+|.+-.+.
T Consensus 710 ~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 15578899999999885443
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.03 Score=60.25 Aligned_cols=89 Identities=13% Similarity=0.121 Sum_probs=48.7
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCH--HHHHHHHHHHhccCCCCCCChHHHHHHHHHHh
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDV--KGLTRTILSSITKQTVDNNDLNFLQEELKKQL 291 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L 291 (883)
..++|+++|++|+||||++..++... ..+=..+..++.. .+.+ .+-++...+.++.+.....+...+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 45899999999999999999998632 2221234445443 2322 22223333333322222345566666555443
Q ss_pred CC-CcEEEEEeCCCC
Q 047584 292 SR-KKFLLVLDDVWN 305 (883)
Q Consensus 292 ~~-kr~LlVlDdv~~ 305 (883)
.. +.=+|++|-...
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 21 234677787644
No 230
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.44 E-value=0.0017 Score=60.61 Aligned_cols=88 Identities=24% Similarity=0.140 Sum_probs=48.6
Q ss_pred EEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEE
Q 047584 218 IPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFL 297 (883)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~L 297 (883)
|.++|++|+|||+||+.+++. ... ...-+.++...+..++....--. ... .......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----cceeE
Confidence 678999999999999999973 211 23446777777777665422111 000 000000000011 17899
Q ss_pred EEEeCCCCCChhhHhhhcccc
Q 047584 298 LVLDDVWNENYTDWARLSLPF 318 (883)
Q Consensus 298 lVlDdv~~~~~~~~~~l~~~l 318 (883)
+|||++...+...+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999766555555554443
No 231
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.43 E-value=0.0037 Score=66.89 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=55.0
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
..+.++|..|+|||.||.++++. +...-..++++++. +++..+...-.. ...+... .+ +.+. +-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~------~l~~~l~~~~~~---~~~~~~~---~~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD------ELIEILREIRFN---NDKELEE---VY-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH------HHHHHHHHHHhc---cchhHHH---HH-HHhc-cC
Confidence 56999999999999999999984 33333356666543 333333221110 0111111 12 2222 23
Q ss_pred EEEEEeCCCCCChhhHhh--hcccccCC-CCCcEEEEeCCC
Q 047584 296 FLLVLDDVWNENYTDWAR--LSLPFQAG-AQGSKIVVTTRN 333 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTTR~ 333 (883)
=||||||+..+....|.. +...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 589999997664444432 22222221 234558888865
No 232
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.43 E-value=0.0087 Score=67.74 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=56.4
Q ss_pred CCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH
Q 047584 211 NDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQ 290 (883)
Q Consensus 211 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 290 (883)
..+..+++.++|++|+||||||+-+++.. -| .++=+++|..-+...+-..|...+........
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------ 384 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------ 384 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcccccc------------
Confidence 34567999999999999999999998632 12 36678888887777777666665543322111
Q ss_pred hCCCcEEEEEeCCCCCC
Q 047584 291 LSRKKFLLVLDDVWNEN 307 (883)
Q Consensus 291 L~~kr~LlVlDdv~~~~ 307 (883)
.+++.-+|+|.+....
T Consensus 385 -dsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 385 -DSRPVCLVIDEIDGAP 400 (877)
T ss_pred -CCCcceEEEecccCCc
Confidence 2578889999997664
No 233
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.047 Score=58.56 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=45.5
Q ss_pred CCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCCh-hHHHh-cCCCccEeCCCCCHHhHHHHHHhh
Q 047584 293 RKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNE-EVAKI-MSLDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 293 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
+++=++|+|++...+...-..+...+.....+..+|++|.+. .+... .+.-..+.+.+++.+++...+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344455668887777666666655555444456666666664 34332 223367889999999998888654
No 234
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.37 E-value=0.012 Score=67.94 Aligned_cols=44 Identities=30% Similarity=0.385 Sum_probs=36.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhc
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHH
Confidence 469999999999988775432 24567899999999999999976
No 235
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.015 Score=65.27 Aligned_cols=190 Identities=18% Similarity=0.155 Sum_probs=110.8
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.++||-+.-...|...+.... -..--...|+-|+||||+|+-++...--.. | ....++..=...+.|-
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 567999999999999996552 133455789999999999998875321110 0 0011111111111211
Q ss_pred HHhcc-----CCCCCCChHHHHHHHHHHh----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEE-EeCCChhHH
Q 047584 268 SSITK-----QTVDNNDLNFLQEELKKQL----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIV-VTTRNEEVA 337 (883)
Q Consensus 268 ~~l~~-----~~~~~~~~~~~~~~l~~~L----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTTR~~~va 337 (883)
..-.. .......+++....+.+.. ++|.=+.|+|.|+......|..+..-+......-+.| .||-...+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11000 0001112333322222221 3555688899999888888988877776655555544 455544443
Q ss_pred H-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHH
Q 047584 338 K-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLA 393 (883)
Q Consensus 338 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 393 (883)
. ..+..+.|.++.++.++....+...+-... -...++....|++..+|..--
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~----I~~e~~aL~~ia~~a~Gs~RD 216 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEG----INIEEDALSLIARAAEGSLRD 216 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcC----CccCHHHHHHHHHHcCCChhh
Confidence 3 344557899999999988888877654322 122256677788888886653
No 236
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.36 E-value=0.018 Score=58.49 Aligned_cols=43 Identities=19% Similarity=0.082 Sum_probs=32.3
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD 258 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 258 (883)
.-.++.|+|.+|+||||+|.+++.. ....-..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4589999999999999999999863 323334677887665553
No 237
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.34 E-value=0.021 Score=62.08 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=81.8
Q ss_pred ceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhc-------------------cCCeEE
Q 047584 189 KVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQD-------------------HFDLKA 249 (883)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 249 (883)
.++|-+....++..+...... ....+.++|++|+||||+|..+.+...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 356777888888888864421 223599999999999999999987421100 112334
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcE
Q 047584 250 WTCVSEDFD---VKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSK 326 (883)
Q Consensus 250 wv~~s~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 326 (883)
.+..+.... ..+..+++.+....... .++.-++++|++.....+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444443333 12222222222211100 25678899999977766555666666666666778
Q ss_pred EEEeCCC-hhHHH-hcCCCccEeCCC
Q 047584 327 IVVTTRN-EEVAK-IMSLDQAYELKS 350 (883)
Q Consensus 327 ilvTTR~-~~va~-~~~~~~~~~l~~ 350 (883)
+|++|.. ..+.. .......+++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 8888763 22222 112234566666
No 238
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.33 E-value=0.037 Score=57.24 Aligned_cols=172 Identities=20% Similarity=0.202 Sum_probs=90.7
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC-CeEEEEEeCCCCCHHH-HHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF-DLKAWTCVSEDFDVKG-LTRT 265 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~-~~~~ 265 (883)
..++|-.++..++-+++...-- -++..-+.|+|+.|.|||+|...+..+ . ..| +..+-|...+....++ .++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~-q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--I-QENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--H-HhcCCeEEEEEECccchhhHHHHHH
Confidence 3488999999998888865311 112345789999999999999888775 2 223 3345556655544322 3455
Q ss_pred HHHHhccC----CCCCCChHHHHHHHHHHhC------CCcEEEEEeCCCCCChhh-----HhhhcccccCCCCCcEEEEe
Q 047584 266 ILSSITKQ----TVDNNDLNFLQEELKKQLS------RKKFLLVLDDVWNENYTD-----WARLSLPFQAGAQGSKIVVT 330 (883)
Q Consensus 266 il~~l~~~----~~~~~~~~~~~~~l~~~L~------~kr~LlVlDdv~~~~~~~-----~~~l~~~l~~~~~gs~ilvT 330 (883)
|.+|+..+ .....+..+-...|-..|+ +-++++|+|.+.-.-... +.-+-..-....+-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 55555321 1111122222233333332 225788887763321111 11111111123455667789
Q ss_pred CCChhHH-------HhcCCCccEeCCCCCHHhHHHHHHhhh
Q 047584 331 TRNEEVA-------KIMSLDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 331 TR~~~va-------~~~~~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
||-.... ....-..++-++.++-++...+++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9863322 111222345566677777777776654
No 239
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.33 E-value=0.015 Score=59.72 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=37.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhhcc----CCeEEEEEeCCCCCHHHHH
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH----FDLKAWTCVSEDFDVKGLT 263 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~ 263 (883)
+.-.++.|+|.+|+|||+||.+++........ -..++|++....++..++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 34589999999999999999999753222221 3578999988877765543
No 240
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.32 E-value=0.018 Score=59.29 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=53.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccC-CeEEEEEeCCCC-CHHHHHHHHHHHhcc-------CCCCCCChH----
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF-DLKAWTCVSEDF-DVKGLTRTILSSITK-------QTVDNNDLN---- 281 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~-~~~~~~~~il~~l~~-------~~~~~~~~~---- 281 (883)
-.-++|+|.+|+||||||+++++. ++.+| +.++++-+.+.. .+.++..++.+.=.. .+.+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 357899999999999999999984 44455 456667776654 344555554432110 011111111
Q ss_pred -HHHHHHHHHh--C-CCcEEEEEeCC
Q 047584 282 -FLQEELKKQL--S-RKKFLLVLDDV 303 (883)
Q Consensus 282 -~~~~~l~~~L--~-~kr~LlVlDdv 303 (883)
...-.+.+++ + ++.+|+++||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122345555 3 88999999998
No 241
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.00035 Score=69.48 Aligned_cols=100 Identities=21% Similarity=0.249 Sum_probs=48.6
Q ss_pred CceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhch--hhhcCcCCCCceec
Q 047584 601 QRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLC--ADMGNLIKLHHLKN 678 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp--~~i~~L~~L~~L~l 678 (883)
.+.+.|++.||.++.+ ..+.+|+.|+.|.|+-|+|+.| ..+..|++|+.|.|+. |.+..+- ..+.+|++|+.|-|
T Consensus 19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence 3444555555555544 2234555555555555555555 2345555555555555 2333332 23455666666666
Q ss_pred CCCCCccccCcc-----CCCCCCCCccCce
Q 047584 679 SNTDSLEEMPLG-----IVRLTCLQTLCNF 703 (883)
Q Consensus 679 ~~~~~~~~~p~~-----i~~L~~L~~L~~~ 703 (883)
..|.....-+.. +.-|++|+.|...
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCc
Confidence 555422222211 3345555555433
No 242
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.30 E-value=0.18 Score=57.51 Aligned_cols=208 Identities=17% Similarity=0.140 Sum_probs=120.9
Q ss_pred ccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchh---h---hccCCeEEEEEeCCCCCHH
Q 047584 187 EAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKR---V---QDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~---~~~F~~~~wv~~s~~~~~~ 260 (883)
+..+-+||.+..+|-..+..--.. .+..+.+.|.|.+|.|||+.+..|.+... . ...|+ .+.|+.-.-..+.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 345779999999998887643221 23346999999999999999999998432 1 22343 3455555556799
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhC-----CCcEEEEEeCCCCCChhhHhhhcccccC-CCCCcEEEEeCC-C
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLS-----RKKFLLVLDDVWNENYTDWARLSLPFQA-GAQGSKIVVTTR-N 333 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTTR-~ 333 (883)
++...|..++.+.... .....+.|..+.. .+..++++|++...-...-+-+...|.+ ..++||++|-+= +
T Consensus 473 ~~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 9999999999865432 2333444555443 4578888888732100001123333332 346777665442 1
Q ss_pred -hhHHH-hcC-------CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhh
Q 047584 334 -EEVAK-IMS-------LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGL 400 (883)
Q Consensus 334 -~~va~-~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 400 (883)
.+... .+. ....+.+.+.++++-.++...+..+.... ...-.+-++++++.-.|..-.|+.+.-++
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f-~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAF-ENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhc-chhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11111 111 12457778888888777777665443211 22334445566665556555555544433
No 243
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.089 Score=58.66 Aligned_cols=189 Identities=16% Similarity=0.186 Sum_probs=101.0
Q ss_pred cceecchhhHHHHHHHHcCCCC------CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS------RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
.++=|.++.+.++.+++..-.. .+-...+-|.++|++|.|||.||+++++. ..-.| +.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch-----
Confidence 5677899988888777754210 12233577899999999999999999984 33233 444332
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh------hhH-----hhhcccc---cCC-CCCcE
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY------TDW-----ARLSLPF---QAG-AQGSK 326 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~------~~~-----~~l~~~l---~~~-~~gs~ 326 (883)
+|+..+. ..+.+.+.+.+.+.-+.-++++++|++.-... .+. ..+...+ ... ..|-.
T Consensus 258 ---eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 258 ---EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ---hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 2222222 22334444455555567899999999953211 111 1121111 111 12332
Q ss_pred EEE---eCCChhHHHhc---C-CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCC----hHHHH
Q 047584 327 IVV---TTRNEEVAKIM---S-LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGL----PLAAK 395 (883)
Q Consensus 327 ilv---TTR~~~va~~~---~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl----PLai~ 395 (883)
||| |+|...+-..+ + -.+.|.|..-++.+-.++++..+-+-.-. ..-+ .++|++..-|. -.|+.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-g~~d----~~qlA~lTPGfVGADL~AL~ 404 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLS-GDFD----FKQLAKLTPGFVGADLMALC 404 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC-CCcC----HHHHHhcCCCccchhHHHHH
Confidence 332 45544433322 1 23567787777777777776655433211 1222 34455555443 34555
Q ss_pred HHHhhh
Q 047584 396 TLGGLL 401 (883)
Q Consensus 396 ~~~~~l 401 (883)
..|+..
T Consensus 405 ~~Aa~v 410 (802)
T KOG0733|consen 405 REAAFV 410 (802)
T ss_pred HHHHHH
Confidence 555443
No 244
>PHA00729 NTP-binding motif containing protein
Probab=96.23 E-value=0.011 Score=59.01 Aligned_cols=24 Identities=46% Similarity=0.513 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...|.|+|.+|+||||||..+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999873
No 245
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.20 E-value=0.021 Score=60.12 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=46.3
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhh-ccCCeEEEEEeCCCC-CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQ-DHFDLKAWTCVSEDF-DVKGLTRTILSSITKQTVDNNDLNFLQEELKKQL 291 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L 291 (883)
..+++.|+|+.|+||||++..++.....+ +.+ .+..|+..... ...+-+....+.++.+.....+...+...+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 45799999999999999999988643222 122 35555543211 122222233333332222233444555555443
Q ss_pred CCCcEEEEEeCC
Q 047584 292 SRKKFLLVLDDV 303 (883)
Q Consensus 292 ~~kr~LlVlDdv 303 (883)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 346777753
No 246
>PRK06696 uridine kinase; Validated
Probab=96.20 E-value=0.0054 Score=62.41 Aligned_cols=44 Identities=27% Similarity=0.269 Sum_probs=35.1
Q ss_pred cchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 192 GRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.|++-+++|.+.+.... .+...+|+|.|.+|+||||||+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 36677788888886532 235789999999999999999999873
No 247
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.17 E-value=0.041 Score=53.83 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=64.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEE---eCCCCCHHHHHH------HHHHHhccCC-----CCCCCh
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTC---VSEDFDVKGLTR------TILSSITKQT-----VDNNDL 280 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~------~il~~l~~~~-----~~~~~~ 280 (883)
-.+++|+|..|.|||||++.++... ....+.+++. +. ..+...... ++++.++... ...-+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3689999999999999999998732 2234444432 21 112222111 1333333221 111122
Q ss_pred -HHHHHHHHHHhCCCcEEEEEeCCCC-CChhhHhhhcccccCCC-C-CcEEEEeCCChhHH
Q 047584 281 -NFLQEELKKQLSRKKFLLVLDDVWN-ENYTDWARLSLPFQAGA-Q-GSKIVVTTRNEEVA 337 (883)
Q Consensus 281 -~~~~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~-~-gs~ilvTTR~~~va 337 (883)
+...-.+.+.+...+-++++|+--. .|......+...+.... . +..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2233346677777888999998742 23333344444333221 2 56788888876554
No 248
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.13 E-value=0.2 Score=54.40 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 194 ETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 194 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+.-.+.|.+.+...+ .....+|+|.|.=|+|||++.+.+...
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444567778776542 135689999999999999999999874
No 249
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.10 E-value=0.023 Score=56.11 Aligned_cols=88 Identities=18% Similarity=0.121 Sum_probs=49.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC-CCHHHHHHHHHHHhccCCC---CCCChHH-HHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED-FDVKGLTRTILSSITKQTV---DNNDLNF-LQEELKK 289 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~---~~~~~~~-~~~~l~~ 289 (883)
++||.+||+.|+||||.+.+++..... +-..+..++.... ....+-++...+.++.+.. ...+..+ +.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh--ccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 379999999999999999888874332 2335666765422 2344556666676664421 1222323 3333443
Q ss_pred HhCCCcEEEEEeCCC
Q 047584 290 QLSRKKFLLVLDDVW 304 (883)
Q Consensus 290 ~L~~kr~LlVlDdv~ 304 (883)
.-.++.=+|++|=..
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322333466777653
No 250
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.10 E-value=0.0036 Score=70.13 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=40.0
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhc
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|.++.+++|++.|..........-+++.++|++|+||||||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 36899999999999999432111223457999999999999999999997
No 251
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.08 E-value=0.025 Score=67.43 Aligned_cols=121 Identities=13% Similarity=0.128 Sum_probs=68.3
Q ss_pred cceecchhhHHHHHHHHcCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
..++|-+..++.|.+.+..... ........+.++|++|+|||++|+.+... ... ..+.++++...+...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~~--- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERHT--- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhccccc---
Confidence 3589999999999888863210 01123457899999999999999999863 222 233444443322111
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhCC-CcEEEEEeCCCCCChhhHhhhccccc
Q 047584 265 TILSSITKQTVDNNDLNFLQEELKKQLSR-KKFLLVLDDVWNENYTDWARLSLPFQ 319 (883)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~~~~~~l~~~l~ 319 (883)
+ ..+.+.+...... .....+.+.+.. ...+|+||++...+.+.+..+...+.
T Consensus 530 -~-~~LiG~~~gyvg~-~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 -V-SRLIGAPPGYVGF-DQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred -H-HHHcCCCCCcccc-cccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1 2222211110000 001123333333 34699999998877777777665554
No 252
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.06 E-value=0.01 Score=59.00 Aligned_cols=112 Identities=14% Similarity=0.154 Sum_probs=60.3
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
.+|.|+|+.|+||||++..+... ........+++-- .+. +..... ...+-.+..-..+.....+.++..+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e-~~~--E~~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIE-DPI--EFVHES-KRSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEc-CCc--cccccC-ccceeeecccCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999987763 3333333444322 211 100000 00000010001122335566777787778
Q ss_pred EEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHHH
Q 047584 296 FLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAK 338 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 338 (883)
=+|++|++.+. +.+...... ...|..++.|+...++..
T Consensus 76 d~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 76 DVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 89999999654 333332222 234666777877665544
No 253
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.05 E-value=0.034 Score=67.24 Aligned_cols=180 Identities=16% Similarity=0.159 Sum_probs=92.8
Q ss_pred cceecchhhHHHHHHHHcCCCC-------CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS-------RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++.|.+..+++|.+++...-. -+-...+.+.++|++|+|||+||+.+++. ....| +.++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH----
Confidence 5688999999998887642100 01123466889999999999999999873 32222 222211
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh-----------hhHhhhcccccCC-CCCcEEE
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY-----------TDWARLSLPFQAG-AQGSKIV 328 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~-~~gs~il 328 (883)
++. ... .......+...+.......+.+|+||++..... .....+...+... ..+..++
T Consensus 247 ~i~----~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EIM----SKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HHh----ccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 111 000 011112233334444456678999999843210 0111222222211 1233344
Q ss_pred E-eCCChh-HHHhcC----CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChH
Q 047584 329 V-TTRNEE-VAKIMS----LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPL 392 (883)
Q Consensus 329 v-TTR~~~-va~~~~----~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 392 (883)
| ||.... +..... -...+.+...+.++-.+++....-... ... ......+++.+.|.--
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-Ccc----ccCHHHHHHhCCCCCH
Confidence 4 444322 222111 124577888888888888875432211 111 1225667788888643
No 254
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.03 E-value=0.0014 Score=65.15 Aligned_cols=91 Identities=21% Similarity=0.211 Sum_probs=51.9
Q ss_pred hhcCCCCCCCcceEEEEecCCC---CCCcCCCcCCCCCeeEEEEecCCC--CCCCCCCCCcCcccceeccCcccceecCC
Q 047584 776 VLDVLKPHANLEQFCIKGYGGM---KFPTWLGDSLFSNLVTLKFENCGI--CTALPSVGQLPSLKHLVVCGMSSVRRLDP 850 (883)
Q Consensus 776 ~l~~l~~~~~L~~L~l~~~~~~---~~p~~~~~~~l~~L~~L~L~~~~~--~~~l~~l~~lp~L~~L~L~~~~~l~~i~~ 850 (883)
.+..++.+++|++|.++.|... .++-... .+|+|++|+|++|++ +..++++..+++|..|++.+|.... +..
T Consensus 57 t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e--~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~d 133 (260)
T KOG2739|consen 57 TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAE--KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDD 133 (260)
T ss_pred ecccCCCcchhhhhcccCCcccccccceehhh--hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-ccc
Confidence 3444555667777777776321 2332222 257888888888764 3446677777888888887774333 211
Q ss_pred CccCCCCCCCCCCcceeeccc
Q 047584 851 EFYGKDASIPFPYLETLRFED 871 (883)
Q Consensus 851 ~~~~~~~~~~~p~L~~L~l~~ 871 (883)
+....+..+|+|++|+-.+
T Consensus 134 --yre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 134 --YREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred --HHHHHHHHhhhhccccccc
Confidence 1111123467777775443
No 255
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.03 E-value=0.023 Score=59.43 Aligned_cols=134 Identities=23% Similarity=0.296 Sum_probs=73.5
Q ss_pred eecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcch-hhhccCCeEEE----EEeCCCC-----CH
Q 047584 190 VYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDK-RVQDHFDLKAW----TCVSEDF-----DV 259 (883)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~w----v~~s~~~-----~~ 259 (883)
+-+|..+..--.++|++++ ...|.+.|.+|.|||.||.++.-.. ..+..|..++- |.+++.. +-
T Consensus 226 i~prn~eQ~~ALdlLld~d------I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDD------IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCCC------CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 3456777777778887663 6899999999999999998775322 23455554332 2233221 11
Q ss_pred HHHH----HHH---HHHhccCCCCCCChHHHHHHHH---------HHhCCC---cEEEEEeCCCCCChhhHhhhcccccC
Q 047584 260 KGLT----RTI---LSSITKQTVDNNDLNFLQEELK---------KQLSRK---KFLLVLDDVWNENYTDWARLSLPFQA 320 (883)
Q Consensus 260 ~~~~----~~i---l~~l~~~~~~~~~~~~~~~~l~---------~~L~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~ 320 (883)
++-+ +.| ++.+..... .....+...+. .+++++ .-+||+|...+-... .++..+..
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~--~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph---eikTiltR 374 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNE--PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH---ELKTILTR 374 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccc--cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH---HHHHHHHh
Confidence 1111 111 112211110 01111111111 123444 468999999876544 44455556
Q ss_pred CCCCcEEEEeCCCh
Q 047584 321 GAQGSKIVVTTRNE 334 (883)
Q Consensus 321 ~~~gs~ilvTTR~~ 334 (883)
.+.||||+.|--..
T Consensus 375 ~G~GsKIVl~gd~a 388 (436)
T COG1875 375 AGEGSKIVLTGDPA 388 (436)
T ss_pred ccCCCEEEEcCCHH
Confidence 68899999987543
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.029 Score=57.91 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=49.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRK 294 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~k 294 (883)
..-+.++|.+|+|||.||.++.+. +...--.+.++++ .++..++...... ......|.+.+ .+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~--------~~~~~~l~~~l-~~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDE--------GRLEEKLLREL-KK 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhc--------CchHHHHHHHh-hc
Confidence 356899999999999999999994 4333234566653 4455555444432 11222333322 23
Q ss_pred cEEEEEeCCCCCChhhHh
Q 047584 295 KFLLVLDDVWNENYTDWA 312 (883)
Q Consensus 295 r~LlVlDdv~~~~~~~~~ 312 (883)
-=||||||+.......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 458899999775555554
No 257
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.02 E-value=0.014 Score=57.96 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=54.0
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh----
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQL---- 291 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L---- 291 (883)
++..|.|++|.||||+++.+...... . ...+.+......-... +.+..+.. ..++. ..+...-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~--~-g~~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~---~~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEA--A-GKRVIGLAPTNKAAKE----LREKTGIE---AQTIH---SFLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHH--T-T--EEEEESSHHHHHH----HHHHHTS----EEEHH---HHTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHh--C-CCeEEEECCcHHHHHH----HHHhhCcc---hhhHH---HHHhcCCcccc
Confidence 68899999999999999998763322 2 2233333322222222 22222211 00000 0000000
Q ss_pred -----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChh
Q 047584 292 -----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEE 335 (883)
Q Consensus 292 -----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 335 (883)
..++-+||+|++...+...+..+...... .|+|+|+.--...
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12345999999988877777777665544 4778887664433
No 258
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.01 E-value=0.041 Score=51.57 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=57.1
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
.+++|+|..|.|||||++.+..-.. .....+|+.-.. .+.-- ..-..-+...-.+.+.+..++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999987422 223444432100 00000 001111222334566667778
Q ss_pred EEEEEeCCCC-CChhhHhhhcccccCCCCCcEEEEeCCChhHHH
Q 047584 296 FLLVLDDVWN-ENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAK 338 (883)
Q Consensus 296 ~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 338 (883)
-++++|+--. -|......+...+... +..||++|...+...
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 8899998743 2333344444334332 245788887755443
No 259
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.027 Score=61.42 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.0
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...++.++|++|+||||+|..++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999863
No 260
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.98 E-value=0.093 Score=63.54 Aligned_cols=179 Identities=15% Similarity=0.156 Sum_probs=93.9
Q ss_pred cceecchhhHHHHHHHHcCCCC-------CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS-------RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++.|.+..++.|.+.+.-+-. .+-...+-+.++|++|.|||+||+++++. ....| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 5678988888888776642100 01123456889999999999999999983 32222 22221 1
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC--------hh----hHhhhcccccC--CCCCcE
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN--------YT----DWARLSLPFQA--GAQGSK 326 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~~----~~~~l~~~l~~--~~~gs~ 326 (883)
++ +... -......+...+...-...+.+|++|++.... .. ....+...+.. ...+-.
T Consensus 522 ~l----~~~~-----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 EI----LSKW-----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred HH----hhcc-----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11 1111 11112223333333335668999999984210 00 01112222221 123445
Q ss_pred EEEeCCChhHHH-hc----CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh
Q 047584 327 IVVTTRNEEVAK-IM----SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 327 ilvTTR~~~va~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 391 (883)
||.||...+... .. .-...+.++..+.++-.++|..+.-+.. .....+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHcCCCC
Confidence 666665543322 11 1235688888888888888876543221 111112 455667777654
No 261
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.97 E-value=0.098 Score=52.66 Aligned_cols=241 Identities=16% Similarity=0.178 Sum_probs=119.6
Q ss_pred ceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcch----hhhccCCeEEEEEeCCC-CCHHHHH
Q 047584 189 KVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDK----RVQDHFDLKAWTCVSED-FDVKGLT 263 (883)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~s~~-~~~~~~~ 263 (883)
.+.++++....+....... ...-+.++|+.|.||-|.+..+.+.. -.+-.-+.+-|.+-+.. ..+..+-
T Consensus 14 ~l~~~~e~~~~Lksl~~~~------d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTG------DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hcccHHHHHHHHHHhcccC------CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 3667777777776665422 36789999999999999887776531 11223344555544332 0000000
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHhC--------CCcE-EEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC-
Q 047584 264 RTILSSITKQTVDNNDLNFLQEELKKQLS--------RKKF-LLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN- 333 (883)
Q Consensus 264 ~~il~~l~~~~~~~~~~~~~~~~l~~~L~--------~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~- 333 (883)
..---++.+++.+..|---+++.+++.-+ .+.| ++|+-.+.+-..+.-..++.-...-.+.+|+|+..-+
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~ 167 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNST 167 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCc
Confidence 00000111222222232223333333221 2344 3444444333333333444444333456777764332
Q ss_pred -hhHHHhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhc--CCC-----
Q 047584 334 -EEVAKIMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLH--GKP----- 405 (883)
Q Consensus 334 -~~va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~--~~~----- 405 (883)
+-+...-+.--.+++...+++|....+....-... ...+ .+++.+|+++++|.---...+--.++ ..+
T Consensus 168 SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~-l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~ 243 (351)
T KOG2035|consen 168 SRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEG-LQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANS 243 (351)
T ss_pred ccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhc-ccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccC
Confidence 22333222234688999999999999887653322 1112 78899999999986532222222221 111
Q ss_pred ---ChHHHHHHHhcccccCCCC--CCCchhHHHHhhcCC
Q 047584 406 ---YKREWKGVLSSKIWELPED--RCPIIPALAVSYYYL 439 (883)
Q Consensus 406 ---~~~~w~~~~~~~~~~~~~~--~~~i~~~l~~sy~~L 439 (883)
-..+|+-.+......+-.. +..+..+-..=|+-|
T Consensus 244 ~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 244 QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1457887766544333222 123444444445444
No 262
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.96 E-value=0.032 Score=57.30 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=54.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCC------------------
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQT------------------ 274 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~------------------ 274 (883)
+.-+++.|+|.+|+|||+||.++... ...+=..++|++..+. ..++.+.+ .+++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 34689999999999999999998653 2223356888988654 44554443 2222100
Q ss_pred --CCCCChHHHHHHHHHHhCC-CcEEEEEeCCC
Q 047584 275 --VDNNDLNFLQEELKKQLSR-KKFLLVLDDVW 304 (883)
Q Consensus 275 --~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 304 (883)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 56689999874
No 263
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.95 E-value=0.0038 Score=62.26 Aligned_cols=81 Identities=25% Similarity=0.278 Sum_probs=35.1
Q ss_pred CCceeEEeeCCCCCCCcCccccCCCcccEEeccCC--Ccc-ccccccccCCCccEEecCCCCchhhch--hhhcCcCCCC
Q 047584 600 LQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGT--VIR-SLPESVNKLYNLHSLLLEDCDRLKKLC--ADMGNLIKLH 674 (883)
Q Consensus 600 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~--~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp--~~i~~L~~L~ 674 (883)
+..|..|++.++.++.+ ..+..|++|++|.++.| ++. .++...-++++|++|++++| .++.+. ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchh
Confidence 33344444444443332 12334555555555555 322 33333334455555555552 232210 1133444555
Q ss_pred ceecCCCC
Q 047584 675 HLKNSNTD 682 (883)
Q Consensus 675 ~L~l~~~~ 682 (883)
.|++.+|.
T Consensus 120 ~Ldl~n~~ 127 (260)
T KOG2739|consen 120 SLDLFNCS 127 (260)
T ss_pred hhhcccCC
Confidence 55555554
No 264
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.95 E-value=0.057 Score=53.82 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCC-CCChhhHhhhcccccCC--CCCcEEEEeCCChhHHHhcC
Q 047584 282 FLQEELKKQLSRKKFLLVLDDVW-NENYTDWARLSLPFQAG--AQGSKIVVTTRNEEVAKIMS 341 (883)
Q Consensus 282 ~~~~~l~~~L~~kr~LlVlDdv~-~~~~~~~~~l~~~l~~~--~~gs~ilvTTR~~~va~~~~ 341 (883)
+..-.+.+.|-..+-+|+.|+-- +-|...-..+...+... ..|..||+.|.+..+|..+.
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 33456778888888899999642 22223333333333322 34778999999999999653
No 265
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.94 E-value=0.027 Score=59.66 Aligned_cols=85 Identities=19% Similarity=0.099 Sum_probs=55.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccC-----CCCCCChHHHHHHH
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQ-----TVDNNDLNFLQEEL 287 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~-----~~~~~~~~~~~~~l 287 (883)
+.-+++-|+|++|+||||||.++... ....-..++|++..+.++.. .+++++.. ...+.+.++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35689999999999999999988763 33334567899887766553 23333321 11234455555555
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 047584 288 KKQLS-RKKFLLVLDDVW 304 (883)
Q Consensus 288 ~~~L~-~kr~LlVlDdv~ 304 (883)
...++ +..-+||+|-+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456789999884
No 266
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0034 Score=37.32 Aligned_cols=19 Identities=47% Similarity=0.843 Sum_probs=10.7
Q ss_pred ccEEeccCCCccccccccc
Q 047584 626 LRYLNLSGTVIRSLPESVN 644 (883)
Q Consensus 626 L~~L~L~~~~i~~lp~~i~ 644 (883)
|++|+|++|+++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5556666655555555544
No 267
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.93 E-value=0.0017 Score=75.03 Aligned_cols=61 Identities=28% Similarity=0.198 Sum_probs=34.6
Q ss_pred CCCcccEEeccCC-Cccc--cccccccCCCccEEecCCC-Cchhhch----hhhcCcCCCCceecCCCC
Q 047584 622 DLRYLRYLNLSGT-VIRS--LPESVNKLYNLHSLLLEDC-DRLKKLC----ADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 622 ~l~~L~~L~L~~~-~i~~--lp~~i~~l~~L~~L~l~~c-~~l~~lp----~~i~~L~~L~~L~l~~~~ 682 (883)
.++.|+.|.+.++ .+.. +-.....+++|+.|++++| ......+ .....+.+|++|+++.+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 3567777777665 3333 3345567778888888762 2222111 223445677777777665
No 268
>PRK13695 putative NTPase; Provisional
Probab=95.87 E-value=0.01 Score=57.72 Aligned_cols=22 Identities=41% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 269
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.86 E-value=0.044 Score=52.43 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=29.4
Q ss_pred EEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCC
Q 047584 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDF 257 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 257 (883)
++.|+|.+|+||||++..+... ....-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcch
Confidence 4689999999999999999873 33333567788776554
No 270
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.86 E-value=0.031 Score=59.30 Aligned_cols=85 Identities=20% Similarity=0.077 Sum_probs=55.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccC-----CCCCCChHHHHHHH
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQ-----TVDNNDLNFLQEEL 287 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~-----~~~~~~~~~~~~~l 287 (883)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++... ++.++.. -..+.+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~~-----a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPVY-----AKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHHH-----HHHcCCCHHHheecCCCCHHHHHHHH
Confidence 34689999999999999999998763 334445788998877766532 2333221 11233455555555
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 047584 288 KKQLS-RKKFLLVLDDVW 304 (883)
Q Consensus 288 ~~~L~-~kr~LlVlDdv~ 304 (883)
...++ +..-+||+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55543 456789999873
No 271
>PRK08233 hypothetical protein; Provisional
Probab=95.84 E-value=0.024 Score=55.65 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999863
No 272
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.83 E-value=0.023 Score=54.67 Aligned_cols=131 Identities=17% Similarity=0.143 Sum_probs=64.0
Q ss_pred eecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchh-hhccCCeEEEEEeCCCCCHHHHHHHHHH
Q 047584 190 VYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKR-VQDHFDLKAWTCVSEDFDVKGLTRTILS 268 (883)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~il~ 268 (883)
++|.+..+.++++.+..-.. .. .-|.|+|..|+||+.+|+.+++... -... -+-|+++. .+.+.+..++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~p---fi~vnc~~-~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNNSPRKNGP---FISVNCAA-LPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHCSTTTTS----EEEEETTT-S-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHhhhcccCC---eEEEehhh-hhcchhhhhhhc
Confidence 47888888888877755321 11 3466999999999999999997421 1222 23344443 233333333332
Q ss_pred HhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccC------C-----CCCcEEEEeCCC
Q 047584 269 SITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQA------G-----AQGSKIVVTTRN 333 (883)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~------~-----~~gs~ilvTTR~ 333 (883)
.-.+...+.... ....+... ..=-|+||++.+.....-..+...+.. + ....|||.||..
T Consensus 73 ~~~~~~~~~~~~--~~G~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 73 HEKGAFTGARSD--KKGLLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp BCSSSSTTTSSE--BEHHHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccc--cCCceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 211110111110 00122222 223567899877655443444333321 1 125688888875
No 273
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.76 E-value=0.091 Score=50.02 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCC-CCCh-hhHhhhcccccCCCCCcEEEEeCCChhHHHhc
Q 047584 281 NFLQEELKKQLSRKKFLLVLDDVW-NENY-TDWARLSLPFQAGAQGSKIVVTTRNEEVAKIM 340 (883)
Q Consensus 281 ~~~~~~l~~~L~~kr~LlVlDdv~-~~~~-~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~ 340 (883)
++-.-.|.+.+-+++-+|+-|.-- +-|. -.|+-+...-.-+..|..||++|.+..+...+
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 344456778888899999988541 1122 34544433222345799999999998877765
No 274
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.76 E-value=0.029 Score=58.06 Aligned_cols=89 Identities=24% Similarity=0.263 Sum_probs=54.2
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhcc----CCeEEEEEeCCCCCHHHHHHHHHHHhccCC---------CCCCCh
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH----FDLKAWTCVSEDFDVKGLTRTILSSITKQT---------VDNNDL 280 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~il~~l~~~~---------~~~~~~ 280 (883)
.-.+.=|+|.+|+|||.|+.+++-...+... =..++|++-...|+.+++. +|++...... ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 3478999999999999999888753322221 2368999999999888775 4565543211 012233
Q ss_pred HHHHHHHH---HHh-CCCcEEEEEeCC
Q 047584 281 NFLQEELK---KQL-SRKKFLLVLDDV 303 (883)
Q Consensus 281 ~~~~~~l~---~~L-~~kr~LlVlDdv 303 (883)
+++...+. ..+ +++--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 44333332 223 345568888887
No 275
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.75 E-value=0.0014 Score=65.00 Aligned_cols=222 Identities=18% Similarity=0.138 Sum_probs=127.6
Q ss_pred cccCCCcccEEeccCCCcc-----ccccccccCCCccEEecCCCCch----hhc-------hhhhcCcCCCCceecCCCC
Q 047584 619 SVGDLRYLRYLNLSGTVIR-----SLPESVNKLYNLHSLLLEDCDRL----KKL-------CADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 619 ~i~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~l----~~l-------p~~i~~L~~L~~L~l~~~~ 682 (883)
.+.-+..+..++||+|.|. .+...|.+-.+|+..+++.- .. .++ -+.+-++|+|+..++|.|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3444778899999999886 34566677788999888752 11 223 3346688999999999998
Q ss_pred CccccCcc----CCCCCCCCccCceEeCc--CCCCCc-ccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceE
Q 047584 683 SLEEMPLG----IVRLTCLQTLCNFVVAK--DSGSGL-RELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELS 755 (883)
Q Consensus 683 ~~~~~p~~----i~~L~~L~~L~~~~~~~--~~~~~~-~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 755 (883)
.....|+. |++-+.|.+|...+++- ..|..+ ..|.+|... ......+.|++..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n--------------------KKaa~kp~Le~vi 163 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN--------------------KKAADKPKLEVVI 163 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH--------------------hhhccCCCceEEE
Confidence 55556654 45556666663322211 001111 111111111 1244567888876
Q ss_pred EEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcC------CCcCCCCCeeEEEEecCCCCCC----C
Q 047584 756 LNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTW------LGDSLFSNLVTLKFENCGICTA----L 825 (883)
Q Consensus 756 l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~------~~~~~l~~L~~L~L~~~~~~~~----l 825 (883)
...|+..++ .....-..+..+.+|+.+.+..|++. |.. .+-..+.+|+.|+|..|..... +
T Consensus 164 cgrNRleng-------s~~~~a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 164 CGRNRLENG-------SKELSAALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred eccchhccC-------cHHHHHHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 654322211 11112234556689999999988764 221 1112368999999999865322 1
Q ss_pred C-CCCCcCcccceeccCcccceecCC-CccCCCCCCCCCCcceeeccc
Q 047584 826 P-SVGQLPSLKHLVVCGMSSVRRLDP-EFYGKDASIPFPYLETLRFED 871 (883)
Q Consensus 826 ~-~l~~lp~L~~L~L~~~~~l~~i~~-~~~~~~~~~~~p~L~~L~l~~ 871 (883)
. .+...+.|+.|.+..| .++.-+. ++........+|+|..|.+.+
T Consensus 235 a~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 235 ADALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred HHHhcccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccch
Confidence 1 4556778999999988 2222211 111101124577777776554
No 276
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.75 E-value=0.045 Score=56.70 Aligned_cols=89 Identities=21% Similarity=0.154 Sum_probs=58.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHH-hccC-CCCCCChHH---HHHHH
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSS-ITKQ-TVDNNDLNF---LQEEL 287 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~-l~~~-~~~~~~~~~---~~~~l 287 (883)
+.-+++=|+|+.|.||||+|.+++- .++..-..++|++.-+.+++..+.. +... +..- ...+.+.++ +...+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 4568999999999999999999886 3444455899999999999887643 3333 2211 112333333 33334
Q ss_pred HHHhCCCcEEEEEeCCC
Q 047584 288 KKQLSRKKFLLVLDDVW 304 (883)
Q Consensus 288 ~~~L~~kr~LlVlDdv~ 304 (883)
.+....+--|+|+|-+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 44434446788899873
No 277
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.73 E-value=0.063 Score=60.72 Aligned_cols=181 Identities=15% Similarity=0.072 Sum_probs=89.8
Q ss_pred cceecchhhHHHHHHHHcC--C--CCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLK--D--DSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLT 263 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~--~--~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 263 (883)
.++.|.+..++.+.+.... . ...+-...+-|.++|++|.|||.+|+++.+. ....| +-+..+ .+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~------~l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG------KLF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH------Hhc
Confidence 4677877766665542211 0 0001233567899999999999999999873 32222 112211 111
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC--------hhhH----hhhcccccCCCCCcEEEEeC
Q 047584 264 RTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN--------YTDW----ARLSLPFQAGAQGSKIVVTT 331 (883)
Q Consensus 264 ~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~~~~----~~l~~~l~~~~~gs~ilvTT 331 (883)
. .. -..+...+...+...-...+++|++|++...- ...- ..+...+.....+--||.||
T Consensus 297 ~----~~-----vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 297 G----GI-----VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred c----cc-----cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 0 00 01111222223332223578999999984210 0001 11111222223344466677
Q ss_pred CChh-HHHhc----CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh
Q 047584 332 RNEE-VAKIM----SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 332 R~~~-va~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 391 (883)
.... +...+ .-...+.++.-+.++-.++|..+.......... ......+++.+.|.-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~---~~dl~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK---KYDIKKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc---ccCHHHHHhhcCCCC
Confidence 5543 22211 223567888888899888888775432110000 112455666666653
No 278
>PRK09354 recA recombinase A; Provisional
Probab=95.72 E-value=0.042 Score=58.82 Aligned_cols=85 Identities=19% Similarity=0.098 Sum_probs=56.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccC-----CCCCCChHHHHHHH
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQ-----TVDNNDLNFLQEEL 287 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~-----~~~~~~~~~~~~~l 287 (883)
+.-+++-|+|++|+||||||.+++.. ....-..++|+..-+.++.. .+++++.. ...+.+.++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35689999999999999999998863 33444678899988877753 23333321 11234455555555
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 047584 288 KKQLS-RKKFLLVLDDVW 304 (883)
Q Consensus 288 ~~~L~-~kr~LlVlDdv~ 304 (883)
...++ +..-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55553 456789999884
No 279
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.041 Score=59.59 Aligned_cols=88 Identities=19% Similarity=0.147 Sum_probs=49.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccC--CeEEEEEeCC-CCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--DLKAWTCVSE-DFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQL 291 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L 291 (883)
..++.++|+.|+||||++.++.... ...+ ..+..++... .....+-++...+.++.+.....+..++...+. .+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~--~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l 213 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC--VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-EL 213 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hh
Confidence 4689999999999999999998742 2233 3455555322 122334444444555443322233333444443 33
Q ss_pred CCCcEEEEEeCCCCC
Q 047584 292 SRKKFLLVLDDVWNE 306 (883)
Q Consensus 292 ~~kr~LlVlDdv~~~ 306 (883)
.++ =+|++|.....
T Consensus 214 ~~~-DlVLIDTaG~~ 227 (374)
T PRK14722 214 RNK-HMVLIDTIGMS 227 (374)
T ss_pred cCC-CEEEEcCCCCC
Confidence 444 45668988543
No 280
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.029 Score=65.65 Aligned_cols=155 Identities=18% Similarity=0.224 Sum_probs=84.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC-----CeEEEEEeCCCCCHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF-----DLKAWTCVSEDFDVKGL 262 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~~~~wv~~s~~~~~~~~ 262 (883)
..++||+.|+.++++.|..... .--.++|.+|+|||++|.-++.. -+.+.- +..++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K------NNPvLiGEpGVGKTAIvEGLA~r-Iv~g~VP~~L~~~~i~s----------- 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK------NNPVLVGEPGVGKTAIVEGLAQR-IVNGDVPESLKDKRIYS----------- 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC------CCCeEecCCCCCHHHHHHHHHHH-HhcCCCCHHHcCCEEEE-----------
Confidence 4689999999999999976532 11356899999999998777652 111111 111111
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCC---------ChhhHhhhcccccCCCCCcEEEEeCC
Q 047584 263 TRTILSSITKQTVDNNDLNFLQEELKKQL-SRKKFLLVLDDVWNE---------NYTDWARLSLPFQAGAQGSKIVVTTR 332 (883)
Q Consensus 263 ~~~il~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTTR 332 (883)
-++..-+.+.... -+.++....+.+.+ +.++.+|++|.++.. ..+.-.-++.+|..+ .--.|=.||-
T Consensus 232 -LD~g~LvAGakyR-GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~ 308 (786)
T COG0542 232 -LDLGSLVAGAKYR-GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTL 308 (786)
T ss_pred -ecHHHHhcccccc-CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccH
Confidence 1122222222222 23344444444444 455899999998531 012222233333332 2223555664
Q ss_pred ChhHH------HhcCCCccEeCCCCCHHhHHHHHHhh
Q 047584 333 NEEVA------KIMSLDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 333 ~~~va------~~~~~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
++--- ......+.+.+...+.+++..+++-.
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 43211 11123467888888888888887643
No 281
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.058 Score=60.52 Aligned_cols=89 Identities=16% Similarity=0.073 Sum_probs=46.8
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC--HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD--VKGLTRTILSSITKQTVDNNDLNFLQEELKKQL 291 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L 291 (883)
...+|+|+|++|+||||++..+......+.....+..++.. .+. ..+-+....+.++.......+...+...+.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-
Confidence 35899999999999999998887632111112334445442 222 22222222222322222223444555555433
Q ss_pred CCCcEEEEEeCCCC
Q 047584 292 SRKKFLLVLDDVWN 305 (883)
Q Consensus 292 ~~kr~LlVlDdv~~ 305 (883)
. ..=+|++|....
T Consensus 427 ~-~~DLVLIDTaG~ 439 (559)
T PRK12727 427 R-DYKLVLIDTAGM 439 (559)
T ss_pred c-cCCEEEecCCCc
Confidence 3 345788888753
No 282
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.68 E-value=0.0097 Score=55.39 Aligned_cols=107 Identities=15% Similarity=0.133 Sum_probs=60.2
Q ss_pred ecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhh-hccCCeEEEEEeCCCCCHHHHHHHHHHH
Q 047584 191 YGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRV-QDHFDLKAWTCVSEDFDVKGLTRTILSS 269 (883)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~il~~ 269 (883)
||+...++++.+.+..-.. ...-|.|+|..|+||+++|+.++..... ...|..+ .+... + .++
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~--- 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AEL--- 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHH---
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHH---
Confidence 4666677777666654211 1245799999999999999999874221 1122110 00010 0 111
Q ss_pred hccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCC-CCCcEEEEeCCC
Q 047584 270 ITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAG-AQGSKIVVTTRN 333 (883)
Q Consensus 270 l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTTR~ 333 (883)
+.+ -+.--|+|+|+..-+.+....+...+... ....|+|.||..
T Consensus 65 -----------------l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 65 -----------------LEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp -----------------HHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred -----------------HHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111 14445778999777666666666555532 567799999986
No 283
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.65 E-value=0.28 Score=51.97 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=40.3
Q ss_pred cccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHH
Q 047584 186 VEAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGL 262 (883)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 262 (883)
.++.++=.......+..++... +-|.|.|.+|+||||+|+.++. +.... .+.|..+...+..++
T Consensus 43 ~d~~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 43 IDPAYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CCCCccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhc
Confidence 3344444444556677777432 4599999999999999999987 33322 234555555444433
No 284
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.64 E-value=0.012 Score=54.13 Aligned_cols=24 Identities=38% Similarity=0.392 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.--|.|.|++|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 356899999999999999999974
No 285
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.63 E-value=0.045 Score=58.34 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=41.8
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhh----ccCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ----DHFDLKAWTCVSEDFDVKGLTRTILSSIT 271 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 271 (883)
+.-+++-|+|.+|+|||+|+.+++-..... ..=..++|++....|+++++.+ +++.++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 345899999999999999998876432221 1124689999999888888754 455554
No 286
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.63 E-value=0.094 Score=58.49 Aligned_cols=88 Identities=15% Similarity=0.099 Sum_probs=47.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCH--HHHHHHHHHHhccCCCCCCChHHHHHHHHHHhC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDV--KGLTRTILSSITKQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 292 (883)
.+++.++|++|+||||++..++........-..+..|+... +.. .+-++...+.++.+.....+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C
Confidence 46999999999999999988876322112223456666533 221 1122222233332222233444555555543 3
Q ss_pred CCcEEEEEeCCCC
Q 047584 293 RKKFLLVLDDVWN 305 (883)
Q Consensus 293 ~kr~LlVlDdv~~ 305 (883)
..=+||+|....
T Consensus 299 -~~DlVlIDt~G~ 310 (424)
T PRK05703 299 -DCDVILIDTAGR 310 (424)
T ss_pred -CCCEEEEeCCCC
Confidence 356788896633
No 287
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.62 E-value=0.043 Score=55.49 Aligned_cols=73 Identities=18% Similarity=0.035 Sum_probs=40.1
Q ss_pred EEEEEecCCchHHHHHHHHhcchhhhc-cC-CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCCCCCChHHHHHHHHHHhC
Q 047584 217 VIPIIGMGGLGKTTLAQLVYNDKRVQD-HF-DLKAWTCVSEDFDVKGLTRTILSSIT-KQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F-~~~~wv~~s~~~~~~~~~~~il~~l~-~~~~~~~~~~~~~~~l~~~L~ 292 (883)
+|+|.|..|+||||+|+.+... ... .. ..+..++....+.....+.... .+. ...++..+.+.+...|...-.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~--l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL--LSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 5899999999999999999873 221 11 2344555544433332222211 111 112244566666666665554
No 288
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.62 E-value=0.046 Score=52.96 Aligned_cols=114 Identities=16% Similarity=0.208 Sum_probs=60.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcch-h--hhc---cCC--eEEEEEeCCCCCHHHHHHHHHHHhccCCC------CCCCh
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDK-R--VQD---HFD--LKAWTCVSEDFDVKGLTRTILSSITKQTV------DNNDL 280 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~-~--~~~---~F~--~~~wv~~s~~~~~~~~~~~il~~l~~~~~------~~~~~ 280 (883)
-.+++|+|+.|+|||||.+.+..+. + +.. .|. .+.|+ .+ .+.+..+..... ..-+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3689999999999999999986321 1 111 111 12232 11 334455443211 11122
Q ss_pred H-HHHHHHHHHhCCC--cEEEEEeCCCC-CChhhHhhhcccccCC-CCCcEEEEeCCChhHHH
Q 047584 281 N-FLQEELKKQLSRK--KFLLVLDDVWN-ENYTDWARLSLPFQAG-AQGSKIVVTTRNEEVAK 338 (883)
Q Consensus 281 ~-~~~~~l~~~L~~k--r~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTTR~~~va~ 338 (883)
. ...-.+.+.+-.+ +-++++|+--. -+......+...+... ..|..||++|.+.....
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2 2233455666667 77888898733 2223333333333321 24667888888876654
No 289
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.065 Score=51.92 Aligned_cols=118 Identities=21% Similarity=0.204 Sum_probs=60.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCC--CCCHHHHHHHHHHHhc--cCCCC--C-------CChH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSE--DFDVKGLTRTILSSIT--KQTVD--N-------NDLN 281 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~il~~l~--~~~~~--~-------~~~~ 281 (883)
-.+++|+|+.|.|||||.+.++.-. ....+.+++.-.. ....... + ..+. .+... . -+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~-~---~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL-R---KNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH-H---hhEEEEcCCchhccchHHHHhhCHH
Confidence 3689999999999999999998732 2233333332110 0011111 1 1111 01000 0 1111
Q ss_pred H-HHHHHHHHhCCCcEEEEEeCCCC-CChhhHhhhcccccCCCCCcEEEEeCCChhHHHh
Q 047584 282 F-LQEELKKQLSRKKFLLVLDDVWN-ENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAKI 339 (883)
Q Consensus 282 ~-~~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~ 339 (883)
+ ..-.+.+.+..++-++++|+-.. -|......+...+.....+..||++|.+.+....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1 22335666777888999998743 2223333333333322235678888888666553
No 290
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.61 E-value=0.048 Score=52.35 Aligned_cols=115 Identities=19% Similarity=0.146 Sum_probs=61.5
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCC--CCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCC
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSE--DFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSR 293 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~ 293 (883)
.+++|+|..|.|||||.+.++.-. ......+++.-.. ..+..+..+ +.+.-- .+-..-+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHhc
Confidence 589999999999999999998632 2334445443211 111111111 111100 0011122233446667777
Q ss_pred CcEEEEEeCCCC-CChhhHhhhcccccCC-CCCcEEEEeCCChhHH
Q 047584 294 KKFLLVLDDVWN-ENYTDWARLSLPFQAG-AQGSKIVVTTRNEEVA 337 (883)
Q Consensus 294 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTTR~~~va 337 (883)
++-++++|+--. .|......+...+... ..|..||++|.+....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 888899998743 2333333443333322 2366788888886543
No 291
>PHA02244 ATPase-like protein
Probab=95.61 E-value=0.081 Score=56.68 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=29.8
Q ss_pred cccceecchhh----HHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 186 VEAKVYGRETE----KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 186 ~~~~~vGr~~~----~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+..++|.... ...+..++... .-|.|+|++|+|||+||+++++.
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~--------~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNAN--------IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHH
Confidence 33445564433 34555555332 23678999999999999999973
No 292
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.60 E-value=0.07 Score=51.76 Aligned_cols=103 Identities=15% Similarity=0.073 Sum_probs=56.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEE------eCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTC------VSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELK 288 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 288 (883)
-.+++|+|..|+|||||++.+..-. ......+++. +.+... -..-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 3689999999999999999998632 1222333221 111111 111122233456
Q ss_pred HHhCCCcEEEEEeCCCCC-ChhhHhhhcccccCC--CCCcEEEEeCCChhHHH
Q 047584 289 KQLSRKKFLLVLDDVWNE-NYTDWARLSLPFQAG--AQGSKIVVTTRNEEVAK 338 (883)
Q Consensus 289 ~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTTR~~~va~ 338 (883)
+.+..++-++++|+--.. |......+...+... ..+..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 667778889999987432 223333333333221 12255777777765444
No 293
>PRK10867 signal recognition particle protein; Provisional
Probab=95.60 E-value=0.074 Score=59.05 Aligned_cols=24 Identities=38% Similarity=0.456 Sum_probs=21.1
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877765
No 294
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.59 E-value=0.041 Score=54.59 Aligned_cols=80 Identities=23% Similarity=0.221 Sum_probs=43.7
Q ss_pred EEEEEecCCchHHHHHHHHhcchhhhccCC---eEEEEEeCCCCCHHHHHHHHHHHhc----cCCCCCCChHHHHHHHHH
Q 047584 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFD---LKAWTCVSEDFDVKGLTRTILSSIT----KQTVDNNDLNFLQEELKK 289 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~s~~~~~~~~~~~il~~l~----~~~~~~~~~~~~~~~l~~ 289 (883)
||+|.|.+|+||||+|+.+...... ..+. ....++............. -.... ...+...+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 7999999999999999999873211 1122 1333333332222222221 11111 111234567777788877
Q ss_pred HhCCCcEEE
Q 047584 290 QLSRKKFLL 298 (883)
Q Consensus 290 ~L~~kr~Ll 298 (883)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 767665444
No 295
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.57 E-value=0.075 Score=58.99 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.9
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...++.++|.+|+||||+|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999888763
No 296
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.56 E-value=0.12 Score=54.47 Aligned_cols=53 Identities=23% Similarity=0.164 Sum_probs=37.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSI 270 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (883)
-.++.|.|.+|+||||++.++.... ...+=..++|++... +..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 3688899999999999999987642 122134688888765 3566666665554
No 297
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.56 E-value=0.072 Score=52.04 Aligned_cols=117 Identities=18% Similarity=0.102 Sum_probs=59.7
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhc--cCC------------CCCCCh-
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSIT--KQT------------VDNNDL- 280 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~--~~~------------~~~~~~- 280 (883)
.+++|+|..|.|||||++.+..-.. .-.+.+++.-. ++......+-+.+. .+. ...-+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 6899999999999999999986321 11223332111 11111001111110 000 011111
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHhhhcccccCCCCCcEEEEeCCChhHHH
Q 047584 281 NFLQEELKKQLSRKKFLLVLDDVWNE-NYTDWARLSLPFQAGAQGSKIVVTTRNEEVAK 338 (883)
Q Consensus 281 ~~~~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 338 (883)
+...-.+.+.+-.++=++++|+.... |......+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22223456667778888999987532 22223333333322223667888888866554
No 298
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.55 E-value=0.11 Score=57.71 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=46.7
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCH--HHHHHHHHHHhccCCCC---CCChHHHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDV--KGLTRTILSSITKQTVD---NNDLNFLQEELK 288 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~---~~~~~~~~~~l~ 288 (883)
...+|.++|.+|+||||+|..++... ...-..++.|++. .+.. .+.++.+..+++.+... ..+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L--~~~g~kV~lV~~D-~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF--KKKGLKVGLVAAD-TYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEecCC-CCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46899999999999999999998743 2221234444432 2222 33445555555433221 123222222222
Q ss_pred HHhCCCcEEEEEeCCC
Q 047584 289 KQLSRKKFLLVLDDVW 304 (883)
Q Consensus 289 ~~L~~kr~LlVlDdv~ 304 (883)
+.+.+. =+||+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 233333 567778763
No 299
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.55 E-value=0.21 Score=46.49 Aligned_cols=82 Identities=12% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhccc-CCHHHHHHHHHHHHHHhhhhhhh
Q 047584 5 GEAILTASVEMLINKLASEGIRLFARQGRIQADLVKWKNKLVTIKAVLDDAEEKKT-TNDAVKLWLGELQNLVYDVEDLL 83 (883)
Q Consensus 5 ~~~~~s~~~~~l~~~l~~~~~~~~~~~~~v~~~~~~L~~~L~~i~~~L~~a~~~~~-~~~~~~~wl~~lrd~ayd~eD~l 83 (883)
|+.+.+|+++.+++.|...+..........+.-+++|..+++.|.-++++.+.-.. -+..-+.-++++.+..-++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555566667788999999999999999999887432 23333667788888888889988
Q ss_pred hhh
Q 047584 84 DEF 86 (883)
Q Consensus 84 D~~ 86 (883)
+.|
T Consensus 83 ~k~ 85 (147)
T PF05659_consen 83 EKC 85 (147)
T ss_pred HHh
Confidence 876
No 300
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.55 E-value=0.099 Score=50.35 Aligned_cols=117 Identities=13% Similarity=0.040 Sum_probs=59.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhh-hcc--CC---eEEEEEeCCCCCH--HHHHHHHHHHhccCCCCCCChHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRV-QDH--FD---LKAWTCVSEDFDV--KGLTRTILSSITKQTVDNNDLNFLQEE 286 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~ 286 (883)
-.+++|+|..|.|||||++.+..-... .+. ++ .+.++ .+.... ..+...+.-. ....-..-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 368999999999999999999874221 111 11 12222 222211 1222222110 11111122233345
Q ss_pred HHHHhCCCcEEEEEeCCCC-CChhhHhhhcccccCCCCCcEEEEeCCChhHHH
Q 047584 287 LKKQLSRKKFLLVLDDVWN-ENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAK 338 (883)
Q Consensus 287 l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 338 (883)
+.+.+..++=++++|+--. .|......+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 6666777788888998633 2223333333333332 356788887766544
No 301
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.54 E-value=0.18 Score=50.28 Aligned_cols=178 Identities=17% Similarity=0.204 Sum_probs=93.6
Q ss_pred cceecchhhHHH---HHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKKE---IVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
.++||-++.+.+ |.+.|..++.=++=..+-|..+|++|.|||.+|+++.+.. +-.| +.+. ..++..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~--kvp~-----l~vk----at~liG 189 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPL-----LLVK----ATELIG 189 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc--CCce-----EEec----hHHHHH
Confidence 578998877754 6677765432122246789999999999999999999943 3222 2221 122221
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh------------hhHhhhccccc--CCCCCcEEEEe
Q 047584 265 TILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY------------TDWARLSLPFQ--AGAQGSKIVVT 330 (883)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~------------~~~~~l~~~l~--~~~~gs~ilvT 330 (883)
+..+. ....+.+...+.-+.-++++.+|.+..... +....+..-+. ..+.|-..|-.
T Consensus 190 ---ehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 190 ---EHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred ---HHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 11110 011112222222244689999998743211 11122222221 12346556666
Q ss_pred CCChhHHHhc---CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCC
Q 047584 331 TRNEEVAKIM---SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGL 390 (883)
Q Consensus 331 TR~~~va~~~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl 390 (883)
|-..++.... .-...++..--+++|-..++..++-.-. -....-.+.++++.+|.
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P-----lpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP-----LPVDADLRYLAAKTKGM 318 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC-----CccccCHHHHHHHhCCC
Confidence 6655543321 1224566666778888888887763211 11112245566666664
No 302
>PRK05439 pantothenate kinase; Provisional
Probab=95.47 E-value=0.08 Score=55.93 Aligned_cols=80 Identities=18% Similarity=0.079 Sum_probs=45.8
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhhcc--CCeEEEEEeCCCCCHHHHHHHHHHHhc-cCCCCCCChHHHHHHHHH
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH--FDLKAWTCVSEDFDVKGLTRTILSSIT-KQTVDNNDLNFLQEELKK 289 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~~il~~l~-~~~~~~~~~~~~~~~l~~ 289 (883)
...-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+.....+..- ..+. ...++.-+.+.+...|..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHH
Confidence 4568999999999999999998876 22221 1234445554443333322211 0111 112334566777777776
Q ss_pred HhCCCc
Q 047584 290 QLSRKK 295 (883)
Q Consensus 290 ~L~~kr 295 (883)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 666654
No 303
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.03 Score=55.20 Aligned_cols=77 Identities=22% Similarity=0.225 Sum_probs=43.2
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHH--hccCCCCCCChHHHHHHHHHHh
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSS--ITKQTVDNNDLNFLQEELKKQL 291 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~--l~~~~~~~~~~~~~~~~l~~~L 291 (883)
++.+|+|.|.+|+||||+|+.++. ..+... +.-++...-+...+. ....+. ..-..+...+.+-+.+.|...+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk~~~~-~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYKDQSH-LPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeeccccccchhh-cCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 468999999999999999999987 333231 111221111110000 000001 1111223456777788888888
Q ss_pred CCCc
Q 047584 292 SRKK 295 (883)
Q Consensus 292 ~~kr 295 (883)
++++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 8887
No 304
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.12 Score=55.65 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=54.0
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhC
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDF-DVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 292 (883)
..+++.|+|+.|+||||++..++... ...-..+.+|++.... ...+-++...+.++.+.....+.+++...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 46899999999999999999988642 2222345666654321 22334444455444333233456666666654421
Q ss_pred -CCcEEEEEeCCCC
Q 047584 293 -RKKFLLVLDDVWN 305 (883)
Q Consensus 293 -~kr~LlVlDdv~~ 305 (883)
+..=+|++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3456778887754
No 305
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.45 E-value=0.047 Score=58.84 Aligned_cols=56 Identities=11% Similarity=0.187 Sum_probs=40.6
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhcc----CCeEEEEEeCCCCCHHHHHHHHHHHh
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH----FDLKAWTCVSEDFDVKGLTRTILSSI 270 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~il~~l 270 (883)
...++-|+|++|+|||++|.+++........ =..++||+....|++..+.+ +++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 4689999999999999999999864221111 14789999998888877654 33443
No 306
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.42 E-value=0.1 Score=50.63 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998863
No 307
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.39 E-value=0.077 Score=50.02 Aligned_cols=117 Identities=17% Similarity=0.101 Sum_probs=60.7
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCC---CCCHHHHHHHHHHHhc-----cC-CCCCCChHH----
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSE---DFDVKGLTRTILSSIT-----KQ-TVDNNDLNF---- 282 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~il~~l~-----~~-~~~~~~~~~---- 282 (883)
..|-|++..|.||||+|....- +..++=-.+.+|-.-. ...-..+++.+ ..+. .. .....+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888889999999987765 3333322334433222 22233333322 1110 00 000111111
Q ss_pred ---HHHHHHHHhC-CCcEEEEEeCCCCC---ChhhHhhhcccccCCCCCcEEEEeCCChh
Q 047584 283 ---LQEELKKQLS-RKKFLLVLDDVWNE---NYTDWARLSLPFQAGAQGSKIVVTTRNEE 335 (883)
Q Consensus 283 ---~~~~l~~~L~-~kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 335 (883)
.....++.+. ++-=|+|||++-.. ..-+.+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2223344444 34569999998432 12334455555655666778999999843
No 308
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.39 E-value=0.069 Score=54.56 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcc
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
....+++|.|+.|+|||||++.+..-
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999873
No 309
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.31 E-value=0.06 Score=52.28 Aligned_cols=118 Identities=21% Similarity=0.174 Sum_probs=59.1
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCC--CCCHHHHHHHHHHHhccCCCC--C-------CChH-HH
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSE--DFDVKGLTRTILSSITKQTVD--N-------NDLN-FL 283 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~il~~l~~~~~~--~-------~~~~-~~ 283 (883)
.+++|+|..|.|||||++.+..-. ....+.+++.-.. ........+.+. +-.+... . -+.. ..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~--~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG--YLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE--EECCCCccccCcHHHHCcCHHHHH
Confidence 589999999999999999998632 2223333332110 011111111100 0011100 0 1111 22
Q ss_pred HHHHHHHhCCCcEEEEEeCCCC-CChhhHhhhcccccCC-CCCcEEEEeCCChhHHH
Q 047584 284 QEELKKQLSRKKFLLVLDDVWN-ENYTDWARLSLPFQAG-AQGSKIVVTTRNEEVAK 338 (883)
Q Consensus 284 ~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTTR~~~va~ 338 (883)
.-.+.+.+-.++=++++|+-.. -|......+...+... ..|..||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2345566667777889998743 2223333333333221 23667888888776554
No 310
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.30 E-value=0.85 Score=48.24 Aligned_cols=157 Identities=12% Similarity=0.084 Sum_probs=89.7
Q ss_pred ceEEEEEecCCchHHHHHHHHhcch--------hhhccCCeEEEEEe-CCCCCHHHHHHHHHHHhccCCCCCCChHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDK--------RVQDHFDLKAWTCV-SEDFDVKGLTRTILSSITKQTVDNNDLNFLQE 285 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~~-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~ 285 (883)
..+..++|..|.||+++|..+.+.. ....|-+...++.. +....++++. ++.+.+.-.+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC-----------
Confidence 4677799999999999999987632 00111112222221 1112222221 2222221110
Q ss_pred HHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC-hhHHH-hcCCCccEeCCCCCHHhHHHHHHhh
Q 047584 286 ELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN-EEVAK-IMSLDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 286 ~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~va~-~~~~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
.-++.+=++|+|++..........+...+......+.+|++|.+ ..+.. .......+++.++++++....+...
T Consensus 86 ----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 86 ----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred ----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 00246778889998777666677777777776677777765543 44433 3344578999999999998777654
Q ss_pred hcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 364 SLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 364 a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
. . + ++.+..++...+|.=-|+..+
T Consensus 162 ~---~----~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 162 N---K----E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred C---C----C---hhHHHHHHHHcCCHHHHHHHH
Confidence 1 1 1 234566666667633455443
No 311
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.12 Score=56.57 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=52.1
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhc--cCCeEEEEEeCCCCCHHH--HHHHHHHHhccCCCCCCChHHHHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQD--HFDLKAWTCVSEDFDVKG--LTRTILSSITKQTVDNNDLNFLQEELKK 289 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~~~~~--~~~~il~~l~~~~~~~~~~~~~~~~l~~ 289 (883)
..++|.++|+.|+||||.+..++....... +-..+..+++. .+.... -++...+.++.+.....+.+++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 357999999999999999988886432211 11234445543 333322 2444444444332233445556555554
Q ss_pred HhCCCcEEEEEeCCCCC
Q 047584 290 QLSRKKFLLVLDDVWNE 306 (883)
Q Consensus 290 ~L~~kr~LlVlDdv~~~ 306 (883)
. .+.-+|++|.....
T Consensus 252 ~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 252 S--KDFDLVLVDTIGKS 266 (388)
T ss_pred h--CCCCEEEEcCCCCC
Confidence 3 34568888988543
No 312
>PRK07667 uridine kinase; Provisional
Probab=95.30 E-value=0.021 Score=56.61 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 197 KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456677775443 24589999999999999999999873
No 313
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.057 Score=52.43 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=61.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhc--cCCC---CC--------CChH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSIT--KQTV---DN--------NDLN 281 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~--~~~~---~~--------~~~~ 281 (883)
-.+++|+|..|.|||||++.++... ....+.+++.-....+.. ..+-..+. .+.. .. -+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3689999999999999999998732 122344443211100000 01111111 0110 00 1112
Q ss_pred H-HHHHHHHHhCCCcEEEEEeCCCCC-ChhhHhhhcccccCC-CCCcEEEEeCCChhHHH
Q 047584 282 F-LQEELKKQLSRKKFLLVLDDVWNE-NYTDWARLSLPFQAG-AQGSKIVVTTRNEEVAK 338 (883)
Q Consensus 282 ~-~~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTTR~~~va~ 338 (883)
+ ..-.+.+.+..++=++++|+--.. |......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2 223466777788889999987432 223333333333321 23667888888866544
No 314
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.28 E-value=0.081 Score=55.48 Aligned_cols=78 Identities=17% Similarity=0.068 Sum_probs=43.0
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccC--CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCCCCCChHHHHHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--DLKAWTCVSEDFDVKGLTRTILSSIT-KQTVDNNDLNFLQEELKKQ 290 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~il~~l~-~~~~~~~~~~~~~~~l~~~ 290 (883)
...+|+|.|..|+||||+|+.+..- ..... ..+..++..........+...- .+. ...++..+.+.+...+...
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~g-~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKERN-LMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHcC-CccccCCChhccHHHHHHHHHHH
Confidence 4689999999999999999887642 22111 1244455444333333322210 010 1123445666777777666
Q ss_pred hCCC
Q 047584 291 LSRK 294 (883)
Q Consensus 291 L~~k 294 (883)
-.++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5554
No 315
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.16 E-value=0.15 Score=54.81 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=42.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhh----ccCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ----DHFDLKAWTCVSEDFDVKGLTRTILSSIT 271 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 271 (883)
+.-+++-|+|.+|+|||+|+.+++-..... +.-..++|++....|+++++.+ +++.++
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 345889999999999999999886432221 1124689999999999888754 455554
No 316
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.14 E-value=0.014 Score=53.32 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEEecCCchHHHHHHHHhcc
Q 047584 218 IPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~ 238 (883)
|.|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 317
>PTZ00494 tuzin-like protein; Provisional
Probab=95.13 E-value=0.91 Score=49.29 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=103.8
Q ss_pred cccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHH
Q 047584 186 VEAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRT 265 (883)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 265 (883)
.+..+|.|+.+-..+.+.|.+.+. ..++++++.|.-|.||++|.+.+...+.+ ..++|.+... ++-++.
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLrs 437 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLRS 437 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHHH
Confidence 346789999998888888876543 46799999999999999999988875433 3567887764 455778
Q ss_pred HHHHhccCCCCC--CChHHHHHHHHH---HhCCCcEEEEEeCCCCCChh-hHhhhcccccCCCCCcEEEEeCCChhHHHh
Q 047584 266 ILSSITKQTVDN--NDLNFLQEELKK---QLSRKKFLLVLDDVWNENYT-DWARLSLPFQAGAQGSKIVVTTRNEEVAKI 339 (883)
Q Consensus 266 il~~l~~~~~~~--~~~~~~~~~l~~---~L~~kr~LlVlDdv~~~~~~-~~~~l~~~l~~~~~gs~ilvTTR~~~va~~ 339 (883)
+++.++.+..+. +-++.+.+..+. ...++.-+||+-==...+.. .+.+ ...|.....-+.|++-.-.+.+-..
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE-~vaLacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGE-VVSLVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHH-HHHHHccchhheeeeechHhhhchh
Confidence 888888765432 334444444443 34567677776532111111 1111 1123333345667765544433221
Q ss_pred c---CCCccEeCCCCCHHhHHHHHHhh
Q 047584 340 M---SLDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 340 ~---~~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
. ..-..|.+++++.++|.++-.+.
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhcc
Confidence 1 12246889999999998877654
No 318
>PRK14974 cell division protein FtsY; Provisional
Probab=95.12 E-value=0.17 Score=54.33 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=47.0
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCH--HHHHHHHHHHhccCCC---CCCChHH-HHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDV--KGLTRTILSSITKQTV---DNNDLNF-LQEEL 287 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~---~~~~~~~-~~~~l 287 (883)
+..+|.++|++|+||||++..++.... ...+ .++.+. ...+.. .+-++.....++.+.. ...+... +...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888876322 2223 233343 222322 2334444555543221 1122222 22333
Q ss_pred HHHhCCCcEEEEEeCCCCC
Q 047584 288 KKQLSRKKFLLVLDDVWNE 306 (883)
Q Consensus 288 ~~~L~~kr~LlVlDdv~~~ 306 (883)
...-....=+|++|-....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3322222238889988554
No 319
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.12 E-value=0.13 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+..|+|++|+|||+||..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999763
No 320
>PTZ00301 uridine kinase; Provisional
Probab=95.10 E-value=0.029 Score=56.06 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 321
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.068 Score=58.51 Aligned_cols=51 Identities=31% Similarity=0.342 Sum_probs=37.3
Q ss_pred cceecch---hhHHHHHHHHcCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 188 AKVYGRE---TEKKEIVELLLKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 188 ~~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.++-|-| .|+++|+++|.++.. -+..-++-|.++|++|.|||-||++++..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 4556766 456778888876532 12233577899999999999999999974
No 322
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.08 E-value=0.11 Score=55.92 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=40.2
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhc----cCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQD----HFDLKAWTCVSEDFDVKGLTRTILSSI 270 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (883)
...++-|+|.+|+|||+++.+++....... .=..++||+....|+.+++.+ +++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 458999999999999999999976422110 112789999988888877643 44443
No 323
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.07 E-value=0.015 Score=46.56 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+|.|.|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 324
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.03 E-value=0.018 Score=53.87 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999885
No 325
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.25 Score=57.71 Aligned_cols=181 Identities=15% Similarity=0.172 Sum_probs=99.2
Q ss_pred cceecchhhH---HHHHHHHcCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEK---KEIVELLLKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~---~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
.++.|-|+.+ +++++.|..++. -+..-++-+-++|++|.|||-||++++.... +-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH-----
Confidence 5677877555 455666655421 1334467799999999999999999997322 334555543
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCCCh---------------hhHhhhcccccCCC--C
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQL-SRKKFLLVLDDVWNENY---------------TDWARLSLPFQAGA--Q 323 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~---------------~~~~~l~~~l~~~~--~ 323 (883)
+.++.+.+.. ......|-..- ...+++|.+|++..... ..+.++..-+.... .
T Consensus 379 ---EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 2222222110 11122222222 34578888888732110 11222222222111 2
Q ss_pred CcEEEEeCCChhHHHh--cC---CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHH
Q 047584 324 GSKIVVTTRNEEVAKI--MS---LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLA 393 (883)
Q Consensus 324 gs~ilvTTR~~~va~~--~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 393 (883)
+--++-+|...++... +. -.+.+.++.-+.....++|..++-.... ..+..++++ |+...-|.+=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHH
Confidence 3334445655554332 22 2356888888888888999888754332 134455566 88888887744
No 326
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.98 E-value=0.05 Score=54.74 Aligned_cols=121 Identities=14% Similarity=0.152 Sum_probs=58.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCC---CChHHHHHHHHH--
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDN---NDLNFLQEELKK-- 289 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~---~~~~~~~~~l~~-- 289 (883)
.+++.|+|+.|.|||||.+.+...... .+-...+| +.. ..+ ....++...+.....-. .....-...+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~--a~~-~~~-~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVP--ADS-ATI-GLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeE--cCC-cEE-eeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 388999999999999999998742211 11111111 111 000 01111122222111100 011111111222
Q ss_pred HhCCCcEEEEEeCCCCCC-hhhH----hhhcccccCC-CCCcEEEEeCCChhHHHhc
Q 047584 290 QLSRKKFLLVLDDVWNEN-YTDW----ARLSLPFQAG-AQGSKIVVTTRNEEVAKIM 340 (883)
Q Consensus 290 ~L~~kr~LlVlDdv~~~~-~~~~----~~l~~~l~~~-~~gs~ilvTTR~~~va~~~ 340 (883)
.+..++.|++||.....- ..+. ..+...+... ..+..+|+||...+++...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 234678999999986532 1111 1222233222 2345799999998877654
No 327
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.98 E-value=0.071 Score=53.29 Aligned_cols=84 Identities=23% Similarity=0.298 Sum_probs=50.8
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhcc-------CCCCCCChHH-----
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDF-DVKGLTRTILSSITK-------QTVDNNDLNF----- 282 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~-------~~~~~~~~~~----- 282 (883)
.-+.|+|.+|+|||+|+..+.+.. .-+.++++.+++.. .+.++.+++...-.. .+.+......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 578999999999999999998753 23445888887653 445555555332110 1111111111
Q ss_pred HHHHHHHHh--CCCcEEEEEeCC
Q 047584 283 LQEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 283 ~~~~l~~~L--~~kr~LlVlDdv 303 (883)
..-.+.+++ +++..|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 111223333 689999999998
No 328
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.97 E-value=0.12 Score=60.21 Aligned_cols=133 Identities=13% Similarity=0.075 Sum_probs=71.8
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchh-hhccCCeEEEEEeCCCCCHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKR-VQDHFDLKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (883)
..++|....+.++++.+..-.. ...-|.|+|..|+|||++|+.+++... ... ..+.|++....+ ..+..
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~---pfv~i~c~~~~~--~~~~~- 265 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAKR---PFVKVNCAALSE--TLLES- 265 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCCC---CeEEeecCCCCH--HHHHH-
Confidence 6799999999998888754321 123578999999999999999987421 112 234445543321 22221
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCC-----------CCcEEEEeCCC
Q 047584 267 LSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGA-----------QGSKIVVTTRN 333 (883)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~ 333 (883)
.+.+........ .........-....=.|+||++..........+...+.... ...|||.||..
T Consensus 266 --~lfg~~~~~~~~-~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 266 --ELFGHEKGAFTG-AIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred --HHcCCCCCccCC-CCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 221111100000 00000000001233458899998776666666665554321 12478887754
No 329
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.047 Score=61.81 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=84.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCC--CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDF--DVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 292 (883)
..-|.|.|+.|+|||+||+++++... +...-.+.+|+++.-. ..+.+.+. +...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHHh
Confidence 45689999999999999999998543 4444455666665421 12222111 2223445567
Q ss_pred CCcEEEEEeCCCCC------ChhhHhh----hccccc-----CCCCCcE--EEEeCCChh-HHHhcC----CCccEeCCC
Q 047584 293 RKKFLLVLDDVWNE------NYTDWAR----LSLPFQ-----AGAQGSK--IVVTTRNEE-VAKIMS----LDQAYELKS 350 (883)
Q Consensus 293 ~kr~LlVlDdv~~~------~~~~~~~----l~~~l~-----~~~~gs~--ilvTTR~~~-va~~~~----~~~~~~l~~ 350 (883)
..+-+|||||+..- +..+|.. +...+. ....+.+ +|.|..... +-.... -.....|+.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 78999999999421 1112211 111110 1123344 344444322 111111 123567888
Q ss_pred CCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCC-hHHHHHH
Q 047584 351 LSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGL-PLAAKTL 397 (883)
Q Consensus 351 L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 397 (883)
+...+-.++++...-... .....+...-+..+|+|. |.-++++
T Consensus 573 p~~~~R~~IL~~~~s~~~----~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNL----SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHHHhhh----hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 888877777765432111 111122333488888874 4444444
No 330
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.95 E-value=0.13 Score=52.72 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=35.4
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (883)
.-+++.|.|.+|+|||++|.++.... . ..-..++||+... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 46899999999999999999876521 2 3345788888765 455555543
No 331
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.93 E-value=0.15 Score=54.86 Aligned_cols=57 Identities=16% Similarity=0.073 Sum_probs=41.1
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhc----cCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQD----HFDLKAWTCVSEDFDVKGLTRTILSSIT 271 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l~ 271 (883)
...++-|+|.+|+|||+||..++-...... .-..++|++....|+++++. +|++.++
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 458899999999999999988874322111 11368999999999888764 4555543
No 332
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.89 E-value=0.069 Score=58.07 Aligned_cols=80 Identities=23% Similarity=0.329 Sum_probs=49.1
Q ss_pred cceecchhhHHHHHHHHcCC--------CCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC---CeEEEEEeCC-
Q 047584 188 AKVYGRETEKKEIVELLLKD--------DSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF---DLKAWTCVSE- 255 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~- 255 (883)
..++|.++.++.+...+... +-...-..+.|.++|++|+|||++|+.+... ....| +..-++..+.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 56889999998887666532 0001112467899999999999999999873 33333 2222222211
Q ss_pred CCCHHHHHHHHHHH
Q 047584 256 DFDVKGLTRTILSS 269 (883)
Q Consensus 256 ~~~~~~~~~~il~~ 269 (883)
..+.+.+++.+...
T Consensus 90 G~dvE~i~r~l~e~ 103 (441)
T TIGR00390 90 GRDVESMVRDLTDA 103 (441)
T ss_pred cCCHHHHHHHHHHH
Confidence 22566666665544
No 333
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.034 Score=53.91 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999974
No 334
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.88 E-value=0.069 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999986
No 335
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.85 E-value=0.03 Score=59.17 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=43.8
Q ss_pred ccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhc
Q 047584 187 EAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
+..|+|.++.+++|++.+.......+.+-+|+.++|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999765443456679999999999999999999986
No 336
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.83 E-value=0.17 Score=52.99 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=47.6
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH--HHHHHHHHHhccCC---CCCCCh-HHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK--GLTRTILSSITKQT---VDNNDL-NFLQEEL 287 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~il~~l~~~~---~~~~~~-~~~~~~l 287 (883)
..+++.++|++|+||||++..++.. ....-..+++++.. .+... +-+....+..+... ....+. ......+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4689999999999999999888863 22222345555543 23332 22233333333211 111222 2223444
Q ss_pred HHHhCCCcEEEEEeCCCC
Q 047584 288 KKQLSRKKFLLVLDDVWN 305 (883)
Q Consensus 288 ~~~L~~kr~LlVlDdv~~ 305 (883)
.....+..=++++|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 444444455778887643
No 337
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.83 E-value=0.021 Score=57.28 Aligned_cols=25 Identities=40% Similarity=0.494 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...+|+|+|++|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999863
No 338
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.83 E-value=0.023 Score=57.27 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+..+|+|+|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999873
No 339
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.82 E-value=0.046 Score=58.07 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcc
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...+.+.|+|++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999984
No 340
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.79 E-value=0.1 Score=62.73 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
..++|+...+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++.... .-...+.+++.... ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC-hhHhhhhhc
Confidence 4699999999888776653211 1246899999999999999999874211 11233445554432 111222221
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCC-----------CCCcEEEEeCCCh
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAG-----------AQGSKIVVTTRNE 334 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTTR~~ 334 (883)
....+. ..... ......+. ....=.|+||+|..........+...+... ....|||.||...
T Consensus 449 g~~~~~-~~g~~-~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGA-FTGAS-AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Cccccc-ccccc-cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 111110 00000 01111121 122346899999877666666665554332 1345888888653
No 341
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.78 E-value=0.13 Score=52.23 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=69.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCC-----CCCHHHHHHHHHHHhccCC------CCCCChHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSE-----DFDVKGLTRTILSSITKQT------VDNNDLNFL 283 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~il~~l~~~~------~~~~~~~~~ 283 (883)
..+++|||..|.|||||++.+..= ...-.+.+++.-.+ .....+...++++..+... +..-+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 468999999999999999999862 22223344433211 1123334455555554332 111222333
Q ss_pred HH-HHHHHhCCCcEEEEEeCCCCCCh----hhHhhhcccccCCCCCcEEEEeCCChhHHHhcC
Q 047584 284 QE-ELKKQLSRKKFLLVLDDVWNENY----TDWARLSLPFQAGAQGSKIVVTTRNEEVAKIMS 341 (883)
Q Consensus 284 ~~-~l~~~L~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~ 341 (883)
++ .+.+.|.-++-+||.|..-+.-. .+.-.+...+.. ..|-..+..|.+-.++..++
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhc
Confidence 33 46788889999999998744311 111112222221 24566788888877777654
No 342
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.39 Score=54.48 Aligned_cols=160 Identities=17% Similarity=0.137 Sum_probs=81.9
Q ss_pred cceecchhhHHHHHHHHcCCCC-------CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS-------RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++=|-|+-+.+|.+.+.-+-. -+-...+-|..+|+||.|||++|+++++ +.+..| +.+...
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH----
Confidence 4555677777766655533210 0223467899999999999999999998 444455 333221
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChh-----------hHhhhcccccCCCCCcEE--
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYT-----------DWARLSLPFQAGAQGSKI-- 327 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~~~~~gs~i-- 327 (883)
+++.. . -......+...+++.=+--+++|.||.+...... ....+..-+........|
T Consensus 503 EL~sk----~-----vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 ELFSK----Y-----VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred HHHHH----h-----cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 11111 1 1111222223333332345678888877321100 011111112111122223
Q ss_pred EE-eCCChhHHHh-cC---CCccEeCCCCCHHhHHHHHHhhhcCC
Q 047584 328 VV-TTRNEEVAKI-MS---LDQAYELKSLSTEDCLSVLAQHSLET 367 (883)
Q Consensus 328 lv-TTR~~~va~~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~ 367 (883)
|- |-|...+-.. +. ..+.+.++.-+.+...++|+.++-..
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 32 3344444333 23 33567777777788888998887543
No 343
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.77 E-value=0.012 Score=34.91 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=18.6
Q ss_pred ceeEEeeCCCCCCCcCccccCC
Q 047584 602 RLRVFSLRGYCIPELPDSVGDL 623 (883)
Q Consensus 602 ~Lr~L~L~~~~~~~lp~~i~~l 623 (883)
+|++|+|++|.++.+|+++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887654
No 344
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.75 E-value=0.045 Score=51.35 Aligned_cols=36 Identities=31% Similarity=0.153 Sum_probs=26.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEE
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTC 252 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 252 (883)
..||-|+|.+|+||||||+++.. +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999998 3444434444443
No 345
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.74 E-value=0.078 Score=57.23 Aligned_cols=134 Identities=13% Similarity=0.037 Sum_probs=70.6
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
..++|+...+.++++.+..-.. ...-|.|+|..|+||+++|+.++....- .-...+.|++.... ...+...+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~-~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-ENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC-HHHHHHHHc
Confidence 4588999999888887765321 1245889999999999999999852111 11123345554432 222222222
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCC-----------CCcEEEEeCCC
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGA-----------QGSKIVVTTRN 333 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~ 333 (883)
..-.+....... .....+. ....=.|+||+|..........+...+.... ...|||.||..
T Consensus 79 g~~~~~~~g~~~--~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 79 GHEAGAFTGAQK--RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred cccccccCCccc--ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 111000000000 0001111 1122347799998776666666655543321 13578887765
No 346
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.73 E-value=0.074 Score=53.93 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=67.1
Q ss_pred eEEEEEecCCchHHHHHHHHhcchh-----hh------ccC---CeEEEEEeCCCC------CHH---------------
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKR-----VQ------DHF---DLKAWTCVSEDF------DVK--------------- 260 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~~s~~~------~~~--------------- 260 (883)
..++|+|+.|.|||||.+.+..-.+ +. ..+ ..+.||.-...+ ++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999976211 10 001 245555421111 111
Q ss_pred -------HHHHHHHHHhccCCC-----CCCChHHHHH-HHHHHhCCCcEEEEEeCCCC-CCh---hhHhhhcccccCCCC
Q 047584 261 -------GLTRTILSSITKQTV-----DNNDLNFLQE-ELKKQLSRKKFLLVLDDVWN-ENY---TDWARLSLPFQAGAQ 323 (883)
Q Consensus 261 -------~~~~~il~~l~~~~~-----~~~~~~~~~~-~l~~~L~~kr~LlVlDdv~~-~~~---~~~~~l~~~l~~~~~ 323 (883)
+...+.++.++.... ..-+-.+.++ .|.+.|..++=|+|||.--. .|. ...-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 233344444433211 1223334443 46678899999999997422 122 2333344444443
Q ss_pred CcEEEEeCCChhHHH
Q 047584 324 GSKIVVTTRNEEVAK 338 (883)
Q Consensus 324 gs~ilvTTR~~~va~ 338 (883)
|.-||++|.+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 888999998855433
No 347
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.17 Score=60.34 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=75.3
Q ss_pred cceecchhhHHHHHHHHcCCCCC-CC-CCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSR-ND-GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRT 265 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~-~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 265 (883)
..++|-++.+..|.+.+...... .+ .....+.+.|+.|+|||-||+++.. .+-+..+..+-++.|+ ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-
Confidence 46889999999999988764321 11 2467888999999999999999986 3333334444454443 222
Q ss_pred HHHHhccCCCCCCChHHHHHHHHHHhCCCcE-EEEEeCCCCCChhhHhhhcccccC
Q 047584 266 ILSSITKQTVDNNDLNFLQEELKKQLSRKKF-LLVLDDVWNENYTDWARLSLPFQA 320 (883)
Q Consensus 266 il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~ 320 (883)
+.+.++.++ . --..+....|.+.++.++| +|+||||...+......+...+..
T Consensus 633 vskligsp~-g-yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 633 VSKLIGSPP-G-YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhhccCCCc-c-cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 333333221 1 0111223367777777765 666899987776666655554443
No 348
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.67 E-value=0.033 Score=66.88 Aligned_cols=187 Identities=16% Similarity=0.120 Sum_probs=83.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCC---CCCChHHHHHHHHHHh
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTV---DNNDLNFLQEELKKQL 291 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~L 291 (883)
.+++.|+|+.|.||||+.+.+....-. . ...++|.+.....+ ..+..+...++.... ...+...-...+...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~-a--q~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALM-F--QSGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHH-H--HhCCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHHHH
Confidence 478999999999999999999753100 0 11112222211000 001111111110000 0000000011122222
Q ss_pred C--CCcEEEEEeCCCCC-ChhhHhhh----cccccCCCCCcEEEEeCCChhHHHhcCCCccEeCCCCCHHhHHHHHHhhh
Q 047584 292 S--RKKFLLVLDDVWNE-NYTDWARL----SLPFQAGAQGSKIVVTTRNEEVAKIMSLDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 292 ~--~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~ilvTTR~~~va~~~~~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
. ..+-|+++|..... +..+-..+ ...+. ..|+.+|+||....+.........+....+..++----|..+.
T Consensus 398 ~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Ykl 475 (771)
T TIGR01069 398 SKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYKL 475 (771)
T ss_pred HhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEEE
Confidence 2 47899999998543 22222222 22332 2578999999998876543221111111111110000011111
Q ss_pred cCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCCChHHHHHHHh
Q 047584 365 LETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREWKGVLS 415 (883)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~ 415 (883)
..+. +. ...|-.|++++ |+|-.+.--|..+.... ......++.
T Consensus 476 ~~G~---~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~-~~~~~~li~ 518 (771)
T TIGR01069 476 LKGI---PG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEF-KEEINVLIE 518 (771)
T ss_pred CCCC---CC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 1110 00 34577787777 78888777776664432 233444433
No 349
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.67 E-value=0.082 Score=51.44 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+|.|+|++|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999974
No 350
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.63 E-value=0.057 Score=52.65 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 351
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.58 E-value=0.19 Score=53.84 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=39.0
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhc----cCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQD----HFDLKAWTCVSEDFDVKGLTRTILSSI 270 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (883)
...++-|+|.+|+|||+|+..++....... .-..++|++....++..++ .++.+.+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 468999999999999999998875322211 1135799998888777764 3344443
No 352
>PRK06547 hypothetical protein; Provisional
Probab=94.57 E-value=0.046 Score=52.79 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...+|.|.|++|+||||+|+.+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999863
No 353
>PRK06762 hypothetical protein; Provisional
Probab=94.56 E-value=0.026 Score=54.40 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|+|++|+||||+|+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 354
>PTZ00035 Rad51 protein; Provisional
Probab=94.55 E-value=0.27 Score=53.07 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=39.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhh----ccCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ----DHFDLKAWTCVSEDFDVKGLTRTILSSI 270 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (883)
+.-.++-|+|.+|+|||+|+..++-..... ..=..++|++....|+.+++ .++.+.+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~ 176 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERF 176 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHh
Confidence 346899999999999999999887532210 11235679998887777764 3344443
No 355
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.55 E-value=0.03 Score=56.70 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.|.|+|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999863
No 356
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.54 E-value=0.088 Score=49.64 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 357
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.49 E-value=0.095 Score=55.45 Aligned_cols=86 Identities=20% Similarity=0.098 Sum_probs=52.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCC-----CCCCChHHHHHHH
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQT-----VDNNDLNFLQEEL 287 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 287 (883)
+.-+++-|+|+.|+||||||..+.. ..+..-..++|+.....++.... +.++... ..++..++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHH
Confidence 3458999999999999999999987 34444557899999888776543 2332211 1234445555555
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 047584 288 KKQLS-RKKFLLVLDDVWN 305 (883)
Q Consensus 288 ~~~L~-~kr~LlVlDdv~~ 305 (883)
...++ +.--++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 55554 3456888998843
No 358
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.0048 Score=61.66 Aligned_cols=78 Identities=27% Similarity=0.267 Sum_probs=62.6
Q ss_pred CCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccc--cccccCCCccEEecCCCCchhhchh-----hhcCcC
Q 047584 599 KLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLP--ESVNKLYNLHSLLLEDCDRLKKLCA-----DMGNLI 671 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~l~~c~~l~~lp~-----~i~~L~ 671 (883)
+++.|+||.|+-|.|+.+ ..+..|+.|+.|.|+.|.|..+- ..+.+|++|++|=|..|.-...-+. .+..|+
T Consensus 39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 899999999999999888 45788999999999999998774 4678999999998887543333222 266788
Q ss_pred CCCcee
Q 047584 672 KLHHLK 677 (883)
Q Consensus 672 ~L~~L~ 677 (883)
+|+.|+
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 898886
No 359
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.47 E-value=0.16 Score=56.21 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=48.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCC------CCCCChH-----HH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQT------VDNNDLN-----FL 283 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~------~~~~~~~-----~~ 283 (883)
-..++|+|..|+|||||++.+..... ....+++..--..-++.++....+....... .+..... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 36799999999999999998886321 2223444432233345544444433321111 1111111 11
Q ss_pred HHHHHHHh--CCCcEEEEEeCC
Q 047584 284 QEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 284 ~~~l~~~L--~~kr~LlVlDdv 303 (883)
...+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22344444 588999999998
No 360
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.45 E-value=0.089 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=18.3
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+.|.|+|.||+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46899999999999999999874
No 361
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.45 E-value=0.084 Score=52.60 Aligned_cols=120 Identities=13% Similarity=0.121 Sum_probs=59.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHH---HHHHHH-
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQ---EELKKQ- 290 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~---~~l~~~- 290 (883)
.+++.|.|+.|.||||+.+.+....-. .+. ..+|.+.. ..+ .+...|...+.............. ..+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l-a~~--G~~vpa~~-~~l-~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM-AQI--GCFVPAEY-ATL-PIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-HHc--CCCcchhh-cCc-cChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 378999999999999999998753211 111 11222111 011 122222222222211111110000 112222
Q ss_pred -hCCCcEEEEEeCCCCC-Chhh----HhhhcccccCCCCCcEEEEeCCChhHHHhcC
Q 047584 291 -LSRKKFLLVLDDVWNE-NYTD----WARLSLPFQAGAQGSKIVVTTRNEEVAKIMS 341 (883)
Q Consensus 291 -L~~kr~LlVlDdv~~~-~~~~----~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~ 341 (883)
+..++-|+++|..... +..+ ...+...+.. .|+.+|++|...+++....
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 2356889999997432 1222 1122223332 3788999999998887654
No 362
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.42 E-value=0.14 Score=56.38 Aligned_cols=85 Identities=19% Similarity=0.220 Sum_probs=51.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC-HHHHHHHHHHHhccC-------CCCCCChH-----
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD-VKGLTRTILSSITKQ-------TVDNNDLN----- 281 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~il~~l~~~-------~~~~~~~~----- 281 (883)
-..++|+|..|+|||||++.+.+.. ..+.++.+-+++... +.++..+++..-... +.+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3679999999999999999998632 225666677766543 344444443321111 11111111
Q ss_pred HHHHHHHHHh--CCCcEEEEEeCC
Q 047584 282 FLQEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 282 ~~~~~l~~~L--~~kr~LlVlDdv 303 (883)
.....+.+++ +++.+|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1122344555 688999999998
No 363
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.42 E-value=0.0043 Score=71.57 Aligned_cols=84 Identities=25% Similarity=0.254 Sum_probs=57.6
Q ss_pred CCCceeEEeeCCCC-CCC--cCccccCCCcccEEeccCC--Ccccc----ccccccCCCccEEecCCCCchhhch-hhh-
Q 047584 599 KLQRLRVFSLRGYC-IPE--LPDSVGDLRYLRYLNLSGT--VIRSL----PESVNKLYNLHSLLLEDCDRLKKLC-ADM- 667 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~-~~~--lp~~i~~l~~L~~L~L~~~--~i~~l----p~~i~~l~~L~~L~l~~c~~l~~lp-~~i- 667 (883)
.++.|+.|.+.++. +.. +-.....+++|+.|+++++ .+... +.....+++|+.|++++|..+...- ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 57889999999885 444 3355678999999999873 22211 2344567899999999987544321 222
Q ss_pred cCcCCCCceecCCCC
Q 047584 668 GNLIKLHHLKNSNTD 682 (883)
Q Consensus 668 ~~L~~L~~L~l~~~~ 682 (883)
..+++|++|.+.+|.
T Consensus 266 ~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCS 280 (482)
T ss_pred hhCCCcceEccCCCC
Confidence 347889999877776
No 364
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.42 E-value=0.11 Score=49.46 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=61.6
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC--HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCC
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD--VKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSR 293 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~ 293 (883)
.+++|+|..|.|||||++.+.... ......+++.-..... .... ...+.--. +-..-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 689999999999999999998732 2234445443221111 1111 11111000 011112233346666667
Q ss_pred CcEEEEEeCCCC-CChhhHhhhcccccCC-CCCcEEEEeCCChhHHHh
Q 047584 294 KKFLLVLDDVWN-ENYTDWARLSLPFQAG-AQGSKIVVTTRNEEVAKI 339 (883)
Q Consensus 294 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTTR~~~va~~ 339 (883)
.+-++++|+.-. .|......+...+... ..+..+|++|........
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 788999998743 2223333333333221 124668888887665544
No 365
>PRK03839 putative kinase; Provisional
Probab=94.41 E-value=0.027 Score=55.12 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 366
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.40 E-value=0.3 Score=57.69 Aligned_cols=87 Identities=22% Similarity=0.185 Sum_probs=50.7
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC--HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD--VKGLTRTILSSITKQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 292 (883)
.+|+.++|+.|+||||.+..++...........+..++.. .+. ..+-++...+.++.+.....+.+++...+.+ +.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 4799999999999999998888743222111244455433 233 3344455555554433333456666655553 34
Q ss_pred CCcEEEEEeCCC
Q 047584 293 RKKFLLVLDDVW 304 (883)
Q Consensus 293 ~kr~LlVlDdv~ 304 (883)
++. +|++|=.-
T Consensus 263 ~~D-~VLIDTAG 273 (767)
T PRK14723 263 DKH-LVLIDTVG 273 (767)
T ss_pred CCC-EEEEeCCC
Confidence 443 66777664
No 367
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.097 Score=53.85 Aligned_cols=79 Identities=15% Similarity=0.258 Sum_probs=46.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchh--hhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKR--VQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 292 (883)
-|+|.++|++|.|||+|.+++++... ..+.|....-+.++.. .++..-..+ ...-+..+-+.+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 48899999999999999999998653 3455544444444322 122211111 11223444556666666
Q ss_pred CCc--EEEEEeCC
Q 047584 293 RKK--FLLVLDDV 303 (883)
Q Consensus 293 ~kr--~LlVlDdv 303 (883)
++. +.+.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 654 34456777
No 368
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.39 Score=55.45 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=85.8
Q ss_pred cceecchhhHHHHHHHHcC---CCC----CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLK---DDS----RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~---~~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
..+.|.+..++.+.+.+.- ... .+-...+.+-++|++|.|||.||+++++ ....+| +.+...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH----
Confidence 4566666666655544422 111 0223456899999999999999999998 333444 222221
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC-----Ch------hhHhhhcccccC--CCCCcEE
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNE-----NY------TDWARLSLPFQA--GAQGSKI 327 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----~~------~~~~~l~~~l~~--~~~gs~i 327 (883)
+++. . +-......+...+...-+..++.|++|.+..- .. .....+...+.. ...+..|
T Consensus 311 ~l~s----k-----~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 311 ELLS----K-----WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred HHhc----c-----ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 1111 1 11112223344445555678999999998321 00 112223323321 2233334
Q ss_pred EEeCCChhHHH-hc----CCCccEeCCCCCHHhHHHHHHhhhc
Q 047584 328 VVTTRNEEVAK-IM----SLDQAYELKSLSTEDCLSVLAQHSL 365 (883)
Q Consensus 328 lvTTR~~~va~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a~ 365 (883)
|-||-...... .+ .-...+.+..-+.++..+.|..+.-
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 55554433222 11 1235788899999999999998764
No 369
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.33 E-value=0.093 Score=54.82 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=39.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (883)
+.-+++.|+|.+|+|||++|.++.. +...+...++||+..+. ..++.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHH
Confidence 3568999999999999999999987 45555888999998775 45554444
No 370
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.33 E-value=0.085 Score=57.47 Aligned_cols=81 Identities=22% Similarity=0.325 Sum_probs=49.3
Q ss_pred cceecchhhHHHHHHHHcCC--------CCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC---CeEEEEEeC-C
Q 047584 188 AKVYGRETEKKEIVELLLKD--------DSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF---DLKAWTCVS-E 255 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s-~ 255 (883)
..++|.+..++.+..++... ........+.|.++|++|+|||+||+.+... ....| +..-|...+ .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 56899999999888777431 0001112367899999999999999999873 33333 222222211 1
Q ss_pred CCCHHHHHHHHHHHh
Q 047584 256 DFDVKGLTRTILSSI 270 (883)
Q Consensus 256 ~~~~~~~~~~il~~l 270 (883)
..+.+...+++....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 125556666655543
No 371
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.24 E-value=0.44 Score=47.75 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 372
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.22 E-value=0.036 Score=54.71 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.++|.|+|++|+||||+|+.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999985
No 373
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.20 E-value=0.2 Score=49.87 Aligned_cols=120 Identities=14% Similarity=0.095 Sum_probs=60.4
Q ss_pred ceEEEEEecCCchHHHHHHHHhcch--h-hhcc--CC---------------eEEEEEeCCCCCHHHHHHHHHHHhccCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDK--R-VQDH--FD---------------LKAWTCVSEDFDVKGLTRTILSSITKQT 274 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~--~-~~~~--F~---------------~~~wv~~s~~~~~~~~~~~il~~l~~~~ 274 (883)
-.+++|+|..|.|||||.+.+.... . ..+. |+ .+.++.-....-......+++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~---- 101 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV---- 101 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc----
Confidence 3689999999999999999998741 1 0110 00 011211110000000111111111
Q ss_pred CCCCChH-HHHHHHHHHhCCCcEEEEEeCCCC-CChhhHhhhcccccCC-CCCcEEEEeCCChhHHH
Q 047584 275 VDNNDLN-FLQEELKKQLSRKKFLLVLDDVWN-ENYTDWARLSLPFQAG-AQGSKIVVTTRNEEVAK 338 (883)
Q Consensus 275 ~~~~~~~-~~~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTTR~~~va~ 338 (883)
...-+.. ...-.+.+.+-.++-++++|+.-. .|......+...+... ..|..||++|.+.....
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 1112222 233446677777888999998743 2333333333333322 23667888888876655
No 374
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.20 E-value=0.35 Score=50.24 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=47.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH--HHHHHHHHhccCCCCCCChHHHHHHHHHHhC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG--LTRTILSSITKQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~--~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 292 (883)
..+++++|.+|+||||+++.+... ....=..+.+++... +.+.. -++...+.++.+.....+.+.+...+...-.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~-~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDH-SRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCC-CCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 369999999999999999988763 222212455565542 22221 1222222222221222445555554443322
Q ss_pred -CCcEEEEEeCCCCC
Q 047584 293 -RKKFLLVLDDVWNE 306 (883)
Q Consensus 293 -~kr~LlVlDdv~~~ 306 (883)
.+.=++++|..-..
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 24567888987554
No 375
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.19 E-value=0.18 Score=52.45 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=66.3
Q ss_pred hHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEE---eCCCCCHHHHHHHHHHHhc-
Q 047584 196 EKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTC---VSEDFDVKGLTRTILSSIT- 271 (883)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~~il~~l~- 271 (883)
..+.+...|... ....-++|+|+.|.|||||.+.+.... ......+++. +....+..++ .....
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~v~~~d~~~ei----~~~~~~ 164 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKKVGIVDERSEI----AGCVNG 164 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEEeecchhHHHH----HHHhcc
Confidence 344555555432 124679999999999999999999732 1222333331 1111111222 22211
Q ss_pred -cCCC-----CC-CChHHHHHHHHHHh-CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHHHh
Q 047584 272 -KQTV-----DN-NDLNFLQEELKKQL-SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAKI 339 (883)
Q Consensus 272 -~~~~-----~~-~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~ 339 (883)
.+.. +. +..... ..+...+ ...+-+|++|.+-.. +.+..+...+. .|..||+||....+...
T Consensus 165 ~~q~~~~~r~~v~~~~~k~-~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 165 VPQHDVGIRTDVLDGCPKA-EGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred cccccccccccccccchHH-HHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 1110 00 011111 1122222 357889999998543 44555544442 47789999998666543
No 376
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.18 E-value=0.29 Score=57.96 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=80.8
Q ss_pred cceecchhhHHHHHHHHcC---CCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLK---DDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
.++.|.+..++++.+.+.. ... ....-.+-|.|+|++|.|||++|+.+.+. ....| +.++.+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------
Confidence 4677877666665554422 110 00111244999999999999999999873 32222 2222211
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhhHhhhccc----ccC--CCCCc
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN----------YTDWARLSLP----FQA--GAQGS 325 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------~~~~~~l~~~----l~~--~~~gs 325 (883)
+.. ... ......+...+...-...+++|++|+++... ...+...... +.. ...+.
T Consensus 221 ~~~----~~~-----g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 FVE----MFV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred hHH----hhh-----cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 110 000 0111223333444444568999999984421 0111111111 111 12344
Q ss_pred EEEEeCCChhHHH-hc-C---CCccEeCCCCCHHhHHHHHHhhhc
Q 047584 326 KIVVTTRNEEVAK-IM-S---LDQAYELKSLSTEDCLSVLAQHSL 365 (883)
Q Consensus 326 ~ilvTTR~~~va~-~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~ 365 (883)
-+|.||...+... .. . -.+.+.+...+.++-.+++..+..
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 5555776654322 11 1 235677888888888888877653
No 377
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.23 Score=55.53 Aligned_cols=182 Identities=18% Similarity=0.242 Sum_probs=95.3
Q ss_pred cceecchhhHHHHHHHHcCCCCC-------CCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSR-------NDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++=|-++.+.++...+..+... +-....-|.++|++|.|||-||++|+| +.+.+| ++|-.+
T Consensus 511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP---- 579 (802)
T KOG0733|consen 511 DDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP---- 579 (802)
T ss_pred hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----
Confidence 45556666666776666543211 112346688999999999999999999 555555 555442
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-----hhhH------hhhcccccC--CCCCcEE
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN-----YTDW------ARLSLPFQA--GAQGSKI 327 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----~~~~------~~l~~~l~~--~~~gs~i 327 (883)
+++..-+ ..+...+...+++.=..-+++|+||.+...- ...| ..+..-+.. ...|--|
T Consensus 580 ELlNkYV---------GESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~v 650 (802)
T KOG0733|consen 580 ELLNKYV---------GESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYV 650 (802)
T ss_pred HHHHHHh---------hhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEE
Confidence 2222211 1122233333444445679999999984311 0111 122222221 1245556
Q ss_pred EEeCCChhHHH-h-cCC---CccEeCCCCCHHhHHHHHHhhhcCCCC-CCCCccHHHHHHHHHHhcCCCh
Q 047584 328 VVTTRNEEVAK-I-MSL---DQAYELKSLSTEDCLSVLAQHSLETTD-FSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 328 lvTTR~~~va~-~-~~~---~~~~~l~~L~~~~~~~Lf~~~a~~~~~-~~~~~~l~~~~~~I~~~c~GlP 391 (883)
|-.|-..++-. . +.. ....-++.-+.+|-..+++...-.... ....-.+.++|+. .+|.|.-
T Consensus 651 iaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 651 IAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred EeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 66665544432 2 222 234455666677777777766542111 1122345555443 3555553
No 378
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.14 E-value=0.28 Score=54.23 Aligned_cols=87 Identities=22% Similarity=0.227 Sum_probs=44.6
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCH--HHHHHHHHHHhccCCCCCCChHHHHHHHHHHh
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDV--KGLTRTILSSITKQTVDNNDLNFLQEELKKQL 291 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L 291 (883)
...+++++|+.|+||||++..+..........+.+..+.... +.+ .+-+....+.++.+.....+..++...+.. +
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~-~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS-YRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-L 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC-cchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-h
Confidence 357999999999999999998876321122223344444322 222 222333333333332223344444333332 3
Q ss_pred CCCcEEEEEeCC
Q 047584 292 SRKKFLLVLDDV 303 (883)
Q Consensus 292 ~~kr~LlVlDdv 303 (883)
.++ -++++|-.
T Consensus 268 ~~~-d~VLIDTa 278 (420)
T PRK14721 268 RGK-HMVLIDTV 278 (420)
T ss_pred cCC-CEEEecCC
Confidence 443 34556665
No 379
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.14 E-value=0.027 Score=50.33 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=18.4
Q ss_pred EEEEecCCchHHHHHHHHhcchhhhccCC
Q 047584 218 IPIIGMGGLGKTTLAQLVYNDKRVQDHFD 246 (883)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 246 (883)
|.|.|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67899999999999999997 4555664
No 380
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.14 E-value=0.22 Score=55.43 Aligned_cols=88 Identities=19% Similarity=0.237 Sum_probs=54.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCCCChH-----
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDF-DVKGLTRTILSSITKQ-------TVDNNDLN----- 281 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~----- 281 (883)
-.-++|.|.+|+|||||+.++...... .+=+.++++-+++.. .+.++..++...=... +.+.....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 467899999999999999998764322 112457777777654 3455555555431111 11111111
Q ss_pred HHHHHHHHHh---CCCcEEEEEeCC
Q 047584 282 FLQEELKKQL---SRKKFLLVLDDV 303 (883)
Q Consensus 282 ~~~~~l~~~L---~~kr~LlVlDdv 303 (883)
.....+.+++ +++.+||++|++
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 1223455666 678999999999
No 381
>PRK04040 adenylate kinase; Provisional
Probab=94.13 E-value=0.038 Score=54.28 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.7
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 382
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.12 E-value=0.18 Score=48.58 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.9
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
+.|.+.|.+|+||||+|+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4678899999999999999987
No 383
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.12 E-value=0.17 Score=49.54 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
-.+++|+|..|.|||||++.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 384
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.11 E-value=0.031 Score=58.39 Aligned_cols=95 Identities=22% Similarity=0.279 Sum_probs=47.7
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCC
Q 047584 198 KEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDN 277 (883)
Q Consensus 198 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~ 277 (883)
..+++.+... -+=+.++|+.|+|||++++....... ...| ...-++.+...+...+ +.+++.-......
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~- 91 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQL-QKIIESKLEKRRG- 91 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHH-HHCCCTTECECTT-
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCC-
Confidence 4455666543 24579999999999999998875321 1111 1334555554333333 2222221100000
Q ss_pred CChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhH
Q 047584 278 NDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDW 311 (883)
Q Consensus 278 ~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~ 311 (883)
.. + .--.+|+.++++||+.-...+.|
T Consensus 92 ~~-------~-gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 92 RV-------Y-GPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp EE-------E-EEESSSEEEEEEETTT-S---TT
T ss_pred CC-------C-CCCCCcEEEEEecccCCCCCCCC
Confidence 00 0 00136899999999966554443
No 385
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.10 E-value=0.13 Score=55.37 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=33.0
Q ss_pred eecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhc
Q 047584 190 VYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHH
Confidence 46777777777777654321 124579999999999999999986
No 386
>PRK00625 shikimate kinase; Provisional
Probab=94.08 E-value=0.034 Score=53.72 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.|.++|++|+||||+++.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999976
No 387
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.07 E-value=0.11 Score=58.05 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=55.4
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCCCChH-----
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDF-DVKGLTRTILSSITKQ-------TVDNNDLN----- 281 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~----- 281 (883)
-.-++|+|.+|+|||||+.++.+... +.+-+.++++-+++.. .+.++..++...-... +.+.....
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 46799999999999999999887533 2356788888877654 3445555554321110 11111111
Q ss_pred HHHHHHHHHh---CCCcEEEEEeCC
Q 047584 282 FLQEELKKQL---SRKKFLLVLDDV 303 (883)
Q Consensus 282 ~~~~~l~~~L---~~kr~LlVlDdv 303 (883)
.....+.+++ +++.+|+++||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 1223455665 378999999999
No 388
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.05 E-value=0.23 Score=51.76 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=47.6
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCC-------CCCChHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTV-------DNNDLNFLQEE 286 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-------~~~~~~~~~~~ 286 (883)
+..+|.|+|.+|+|||||+..+.+. ....... +.+ .....+..+ .+.++..+.+.. -..+...+...
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~~~-~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR--LKDSVPC-AVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--hccCCCE-EEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 4789999999999999999999873 3333322 222 222222222 122333222110 11234445556
Q ss_pred HHHHhCCCcEEEEEeCCCC
Q 047584 287 LKKQLSRKKFLLVLDDVWN 305 (883)
Q Consensus 287 l~~~L~~kr~LlVlDdv~~ 305 (883)
+........=+||++++..
T Consensus 177 l~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 177 APRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHhhcCCcEEEEECCCC
Confidence 6655444456778999854
No 389
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=4.9 Score=44.06 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.4
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
|--.++|+||.|||+++.++++.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh
Confidence 55779999999999999999984
No 390
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.04 E-value=0.25 Score=50.93 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=54.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhh--hccCCeEEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCCCChH---
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRV--QDHFDLKAWTCVSEDF-DVKGLTRTILSSITKQ-------TVDNNDLN--- 281 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~--- 281 (883)
-..++|.|..|+|||+|+..+.+.... +.+-+.++++-+++.. ...++..++.+.=... ..+.....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 356899999999999999998874321 1234678888888764 3555555554431110 01111111
Q ss_pred --HHHHHHHHHh--C-CCcEEEEEeCC
Q 047584 282 --FLQEELKKQL--S-RKKFLLVLDDV 303 (883)
Q Consensus 282 --~~~~~l~~~L--~-~kr~LlVlDdv 303 (883)
.....+.+++ + ++.+|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1123355555 2 68999999998
No 391
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.03 E-value=0.26 Score=48.77 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=28.0
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccC--------CeEEEEEeCCC
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--------DLKAWTCVSED 256 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~s~~ 256 (883)
.++.|+|++|+||||++..+....-....| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 588999999999999999998754322222 25778877655
No 392
>PRK15453 phosphoribulokinase; Provisional
Probab=94.03 E-value=0.29 Score=50.51 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=42.9
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCC-eEEEEEeCCC--CCHHHHHHHHHH--Hhcc--CC--CCCCChHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVSED--FDVKGLTRTILS--SITK--QT--VDNNDLNFLQ 284 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~--~~~~~~~~~il~--~l~~--~~--~~~~~~~~~~ 284 (883)
+..+|+|.|.+|+||||+|+.+... .+ +.. ..+.++...- ++..+.-..+.. .-+. .. ++..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~-~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FR-RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--Hh-hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 4579999999999999999998852 21 111 2333433322 232232222211 1111 11 3556777788
Q ss_pred HHHHHHhCC
Q 047584 285 EELKKQLSR 293 (883)
Q Consensus 285 ~~l~~~L~~ 293 (883)
+.++.+.++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 888776653
No 393
>PRK04328 hypothetical protein; Provisional
Probab=93.96 E-value=0.19 Score=52.01 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=31.6
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED 256 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 256 (883)
.-.++.|.|.+|+|||+||.++... ....-...+|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 4589999999999999999987763 2233456888887664
No 394
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.96 E-value=0.41 Score=48.53 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|.|||||++.+..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.95 E-value=0.3 Score=48.76 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=32.5
Q ss_pred HHHHHhCCCcEEEEEeCCCCC-ChhhHh-hhcccccCCCC--CcEEEEeCCChhHHHh
Q 047584 286 ELKKQLSRKKFLLVLDDVWNE-NYTDWA-RLSLPFQAGAQ--GSKIVVTTRNEEVAKI 339 (883)
Q Consensus 286 ~l~~~L~~kr~LlVlDdv~~~-~~~~~~-~l~~~l~~~~~--gs~ilvTTR~~~va~~ 339 (883)
.+.+.+..++-++++|+.-.. |..... .+...+..... |..||++|.+......
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 455677788899999998432 223333 34343333222 5568888888776553
No 396
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.94 E-value=0.17 Score=58.44 Aligned_cols=134 Identities=13% Similarity=0.116 Sum_probs=73.7
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
..++|+...+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++...- .-...+.|++..-.+ ..+...+.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~-~~~e~~lf 259 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE-SLAESELF 259 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh-HHHHHHhc
Confidence 5689999999988888865322 2346889999999999999999873211 112334566554332 21212221
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCC-----------CCcEEEEeCCC
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGA-----------QGSKIVVTTRN 333 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~ 333 (883)
....+....... + ....+. ..+ .=-|+||++..........+...+.... ...|||.||..
T Consensus 260 G~~~g~~~ga~~-~-~~g~~~--~a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 260 GHVKGAFTGAIS-N-RSGKFE--LAD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred CccccccCCCcc-c-CCcchh--hcC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 111110000000 0 000111 112 2236899998877666666665554321 24588888865
No 397
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.94 E-value=0.41 Score=53.83 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+|++++|+.|+||||++..++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 479999999999999999999874
No 398
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.93 E-value=0.15 Score=49.11 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=45.2
Q ss_pred EEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCC--Cc
Q 047584 218 IPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSR--KK 295 (883)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~--kr 295 (883)
+.|.|.+|+|||++|.++... .....+++.-.+.++.+ ....|.+..... .......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCC
Confidence 679999999999999998752 22456777777776653 333333322211 2222222222334444421 23
Q ss_pred EEEEEeCC
Q 047584 296 FLLVLDDV 303 (883)
Q Consensus 296 ~LlVlDdv 303 (883)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37899987
No 399
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.90 E-value=0.33 Score=49.58 Aligned_cols=41 Identities=17% Similarity=0.094 Sum_probs=30.4
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED 256 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 256 (883)
.-.++.|.|.+|+||||||.++... ....-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 4579999999999999999987653 2223456788887443
No 400
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.90 E-value=0.18 Score=54.05 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.9
Q ss_pred EEEEecCCchHHHHHHHHhcc
Q 047584 218 IPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~ 238 (883)
+++.|++|+||||+++.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999864
No 401
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.90 E-value=0.23 Score=58.04 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.4
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.-..++|+|+.|+|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999999975
No 402
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.89 E-value=0.04 Score=53.56 Aligned_cols=25 Identities=48% Similarity=0.484 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchHHHHHHHHhcch
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDK 239 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~ 239 (883)
..+|+|-||-|+||||||+.+.+..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4789999999999999999999843
No 403
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.18 Score=54.05 Aligned_cols=83 Identities=23% Similarity=0.208 Sum_probs=51.7
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTV-----DNNDLNFLQEELKK 289 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~~ 289 (883)
-.+|.|-|-+|||||||..++..+ ....- .+++|+--+. ..++- --+..++.... ...+++.+...+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES--~~Qik-lRA~RL~~~~~~l~l~aEt~~e~I~~~l~- 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEES--LQQIK-LRADRLGLPTNNLYLLAETNLEDIIAELE- 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcC--HHHHH-HHHHHhCCCccceEEehhcCHHHHHHHHH-
Confidence 478999999999999999999984 44333 6777765544 33321 11233432211 2234455444444
Q ss_pred HhCCCcEEEEEeCCCCC
Q 047584 290 QLSRKKFLLVLDDVWNE 306 (883)
Q Consensus 290 ~L~~kr~LlVlDdv~~~ 306 (883)
+.++-++|+|-+...
T Consensus 166 --~~~p~lvVIDSIQT~ 180 (456)
T COG1066 166 --QEKPDLVVIDSIQTL 180 (456)
T ss_pred --hcCCCEEEEecccee
Confidence 368899999988543
No 404
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.84 E-value=0.1 Score=56.78 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=61.3
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
..|.|.|+.|+||||+++.+.+ .+..+....++. +..+. +-..... ..+..+.....+.......++..|...+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~--E~~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPI--EYVHRNK-RSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCCh--hhhccCc-cceEEccccCCCCcCHHHHHHHhhccCC
Confidence 6899999999999999999876 233344445443 22221 1110000 0000010011112235566788888899
Q ss_pred EEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHH
Q 047584 296 FLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVA 337 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va 337 (883)
=.|++|.+.+. +.+..... ....|..|+.|+...++.
T Consensus 197 d~i~vgEird~--~~~~~~l~---aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 197 DVILIGEMRDL--ETVELALT---AAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CEEEEeCCCCH--HHHHHHHH---HHHcCCcEEEEEcCCCHH
Confidence 99999999654 44443222 223466666666654444
No 405
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.84 E-value=0.37 Score=53.73 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=52.0
Q ss_pred ceEEEEEecCCchHHHHH-HHHhcchhhh-----ccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCC------CCCC--h
Q 047584 215 FAVIPIIGMGGLGKTTLA-QLVYNDKRVQ-----DHFDLKAWTCVSEDFDVKGLTRTILSSITKQTV------DNND--L 280 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~------~~~~--~ 280 (883)
-.-++|.|..|+|||+|| ..+.+...+. .+-+.++++-+++..+-..-+.+.+++-+.-.. ..++ .
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 356899999999999997 5566643221 234578888888875432223333333221100 1111 1
Q ss_pred HH-----HHHHHHHHh--CCCcEEEEEeCCC
Q 047584 281 NF-----LQEELKKQL--SRKKFLLVLDDVW 304 (883)
Q Consensus 281 ~~-----~~~~l~~~L--~~kr~LlVlDdv~ 304 (883)
.. ....+.+++ +++..|||+||+-
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 11 122344444 5789999999993
No 406
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.61 Score=47.77 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 407
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.82 E-value=0.034 Score=49.05 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=18.8
Q ss_pred EEEEecCCchHHHHHHHHhcc
Q 047584 218 IPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~ 238 (883)
|-|+|.+|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998874
No 408
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.81 E-value=1.2 Score=46.49 Aligned_cols=134 Identities=10% Similarity=0.059 Sum_probs=72.8
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccC---
Q 047584 197 KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQ--- 273 (883)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~--- 273 (883)
-++|...+..+. -.....++|+.|+||+++|..+....- ... .. . ..+.+....++.
T Consensus 6 ~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~ll-C~~----------~~-~---~c~~~~~~~HPD~~~ 65 (290)
T PRK05917 6 WEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLIL-KET----------SP-E---AAYKISQKIHPDIHE 65 (290)
T ss_pred HHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHh-CCC----------Cc-c---HHHHHhcCCCCCEEE
Confidence 356666665432 245677999999999999988875311 000 00 0 001111111000
Q ss_pred ----CC-CCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC-hhHH-HhcC
Q 047584 274 ----TV-DNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN-EEVA-KIMS 341 (883)
Q Consensus 274 ----~~-~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~va-~~~~ 341 (883)
.. .....++.. .+.+.+ .+++=++|+|++.....+.+..+...+.....++.+|++|.+ ..+. +..+
T Consensus 66 i~p~~~~~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 66 FSPQGKGRLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred EecCCCCCcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh
Confidence 00 001233332 233333 245568889999888888888888888776667766666655 4443 2233
Q ss_pred CCccEeCCCC
Q 047584 342 LDQAYELKSL 351 (883)
Q Consensus 342 ~~~~~~l~~L 351 (883)
....+.+.++
T Consensus 145 Rcq~~~~~~~ 154 (290)
T PRK05917 145 RSLSIHIPME 154 (290)
T ss_pred cceEEEccch
Confidence 3355666654
No 409
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.81 E-value=0.043 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+++|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 410
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.80 E-value=0.37 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.7
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 411
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.79 E-value=0.036 Score=54.43 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999886
No 412
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.78 E-value=0.035 Score=53.50 Aligned_cols=42 Identities=21% Similarity=0.109 Sum_probs=30.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhh-ccCCeEEEEEeCCCCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQ-DHFDLKAWTCVSEDFD 258 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~ 258 (883)
..++.++|+.|+|||.||+.+..- +. +.....+-++.+...+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccc
Confidence 578899999999999999999873 33 3444566666655443
No 413
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.76 E-value=0.16 Score=51.80 Aligned_cols=49 Identities=24% Similarity=0.235 Sum_probs=32.4
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRT 265 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 265 (883)
.-+++.|.|.+|+|||+||.++.... .+..=+.++||+..+. ..++.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~--~~~l~~~ 66 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEP--PEELIEN 66 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS---HHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCC--HHHHHHH
Confidence 45899999999999999999877532 2221346788887654 3444443
No 414
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.23 Score=49.07 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999985
No 415
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.71 E-value=0.099 Score=48.53 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=27.5
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCC
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSE 255 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 255 (883)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999842 234555555666655
No 416
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.69 E-value=0.039 Score=55.03 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 417
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.69 E-value=0.086 Score=48.04 Aligned_cols=40 Identities=25% Similarity=0.144 Sum_probs=28.1
Q ss_pred hhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 195 TEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
++.+++.+.|...- ....+|.+.|.-|+||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555553321 12358999999999999999999974
No 418
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.66 E-value=0.066 Score=51.31 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999874
No 419
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.64 E-value=0.13 Score=56.09 Aligned_cols=82 Identities=20% Similarity=0.188 Sum_probs=47.7
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTV-----DNNDLNFLQEELK 288 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 288 (883)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ..++... ...++.... ...+.+.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~~R-a~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIKLR-ADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHHHH-HHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 3479999999999999999999863 3333346778876443 3333221 233332111 1223444444332
Q ss_pred HHhCCCcEEEEEeCC
Q 047584 289 KQLSRKKFLLVLDDV 303 (883)
Q Consensus 289 ~~L~~kr~LlVlDdv 303 (883)
..+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235667888887
No 420
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.63 E-value=0.21 Score=54.38 Aligned_cols=104 Identities=23% Similarity=0.315 Sum_probs=59.5
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhh----hccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRV----QDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKK 289 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 289 (883)
..+-+-|+|..|.|||.|...+|+...+ +-|| .....++-+.+..-....+.+. .+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF--------------h~Fm~~vh~~l~~~~~~~~~l~----~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF--------------HEFMLDVHSRLHQLRGQDDPLP----QVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccc--------------cHHHHHHHHHHHHHhCCCccHH----HHHH
Confidence 4678999999999999999999985433 2233 2333344344332221222222 3445
Q ss_pred HhCCCcEEEEEeCCCCCChhhHhhhcccccCC-CCCcEEEEeCCChhH
Q 047584 290 QLSRKKFLLVLDDVWNENYTDWARLSLPFQAG-AQGSKIVVTTRNEEV 336 (883)
Q Consensus 290 ~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTTR~~~v 336 (883)
.+.++..||.||.+.=.|..+---+..-|..- ..|. |||+|.+..-
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRPP 169 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCCh
Confidence 55667779999998766555532222222221 2454 6666666443
No 421
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.59 E-value=0.13 Score=52.06 Aligned_cols=40 Identities=33% Similarity=0.462 Sum_probs=29.0
Q ss_pred hHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcch
Q 047584 196 EKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDK 239 (883)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 239 (883)
+...+++.+.... ++..+|+|.|+||+|||||..++....
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 3456666665542 246899999999999999999988743
No 422
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.58 E-value=0.48 Score=50.61 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
-.+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999753
No 423
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.56 E-value=0.052 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 424
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.56 E-value=0.058 Score=50.07 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.++++|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988876
No 425
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.55 E-value=0.043 Score=53.57 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 426
>PLN02348 phosphoribulokinase
Probab=93.55 E-value=0.37 Score=52.27 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...+|+|.|.+|+||||+|+.+.+.
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999873
No 427
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.53 E-value=0.045 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999998873
No 428
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.53 E-value=0.36 Score=49.22 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=31.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (883)
..++.|+|.+|+||||||.++.... .+.. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 4699999999999999987665532 2222 3466776433 455665555
No 429
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.48 E-value=0.24 Score=54.78 Aligned_cols=85 Identities=22% Similarity=0.268 Sum_probs=47.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC-CCHHHHHHHHHHHhccC-------CCCCCChHH----
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED-FDVKGLTRTILSSITKQ-------TVDNNDLNF---- 282 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~-------~~~~~~~~~---- 282 (883)
-..++|+|..|+|||||++.+....+ -+..+.+.+.+. -.+.++..+.+..-... +.+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 36799999999999999998887422 122333333332 23444444433321111 111111111
Q ss_pred -HHHHHHHHh--CCCcEEEEEeCC
Q 047584 283 -LQEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 283 -~~~~l~~~L--~~kr~LlVlDdv 303 (883)
....+.+++ +++.+|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 122345555 578999999998
No 430
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.47 E-value=0.3 Score=52.24 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...++.++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999999874
No 431
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.46 E-value=0.052 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.0
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999863
No 432
>PRK05973 replicative DNA helicase; Provisional
Probab=93.44 E-value=0.18 Score=51.09 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=33.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (883)
-.++.|.|.+|+|||++|.++... ...+=..+++++.... ..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHHH
Confidence 468999999999999999998763 2222345677776554 45555544
No 433
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.43 E-value=0.34 Score=50.37 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=30.3
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCC
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSE 255 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 255 (883)
.-+++.|.|.+|+|||++|.++... ....=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 4589999999999999999998653 212234678888764
No 434
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.43 E-value=0.4 Score=47.46 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
-.+++|+|+.|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 435
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.42 E-value=0.43 Score=50.84 Aligned_cols=85 Identities=20% Similarity=0.295 Sum_probs=48.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC-CCHHHHHHHHHHHhccC-------CCCCCChH-----
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED-FDVKGLTRTILSSITKQ-------TVDNNDLN----- 281 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~-------~~~~~~~~----- 281 (883)
-..++|+|..|+|||||++.+.+... -+..+..-+... -++.++.......-... +.+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999987422 233444444432 34555554444432111 11111111
Q ss_pred HHHHHHHHHh--CCCcEEEEEeCC
Q 047584 282 FLQEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 282 ~~~~~l~~~L--~~kr~LlVlDdv 303 (883)
.....+.+++ ++|.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1122344444 588999999998
No 436
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.40 E-value=0.13 Score=45.91 Aligned_cols=51 Identities=18% Similarity=0.291 Sum_probs=35.8
Q ss_pred cceecchhhHHHHHHHHcCCCC-CCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 188 AKVYGRETEKKEIVELLLKDDS-RNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..++|-+-..+.+++.+.+--. ....+.-|++..|.+|+|||-+++.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3567766666666555543111 13456789999999999999999888875
No 437
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.38 E-value=0.057 Score=50.62 Aligned_cols=20 Identities=45% Similarity=0.748 Sum_probs=18.5
Q ss_pred EEEEEecCCchHHHHHHHHh
Q 047584 217 VIPIIGMGGLGKTTLAQLVY 236 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~ 236 (883)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998887
No 438
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.36 E-value=0.14 Score=54.40 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=34.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
.+++.+.|.||+||||+|.+..- ........++-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhc
Confidence 47999999999999999988654 3333335577777766666655544
No 439
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.35 E-value=0.24 Score=57.74 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=61.4
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccC---CeEEEEEeCCCCCHHHHHHHHHHHhccCCCCC---CChHHHHHHHHH
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHF---DLKAWTCVSEDFDVKGLTRTILSSITKQTVDN---NDLNFLQEELKK 289 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~---~~~~~~~~~l~~ 289 (883)
++..|.|.+|.||||++..+... ..... ...+.+......-...+...+...+..-.... .....-...+.+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHr 245 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHR 245 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHH
Confidence 68999999999999999988863 21111 23455554443333444444333221110000 000001122333
Q ss_pred HhCC------------Cc---EEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChh
Q 047584 290 QLSR------------KK---FLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEE 335 (883)
Q Consensus 290 ~L~~------------kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 335 (883)
.|.- .+ =++|+|.....+......+..+++ +++|+|+---...
T Consensus 246 lLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~Q 303 (615)
T PRK10875 246 LLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQ 303 (615)
T ss_pred HhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhh
Confidence 3321 11 289999997776666666666665 4678887664433
No 440
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.34 E-value=0.14 Score=55.51 Aligned_cols=65 Identities=23% Similarity=0.155 Sum_probs=47.3
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRT 265 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 265 (883)
..++|+++....+...+... +-+.+.|.+|+|||+||+.+... ... ...+|.+.......++...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~~---~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LGL---PFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hCC---CeEEEecCCCCCHHHhcCc
Confidence 34889888888877777654 35889999999999999999973 332 3456667666666665443
No 441
>PRK06217 hypothetical protein; Validated
Probab=93.32 E-value=0.053 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999974
No 442
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.32 E-value=0.23 Score=50.81 Aligned_cols=76 Identities=16% Similarity=0.088 Sum_probs=41.8
Q ss_pred EEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC--HHHHHHHHHHHh----ccCC--CCCCChHHHHHHHH
Q 047584 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD--VKGLTRTILSSI----TKQT--VDNNDLNFLQEELK 288 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l----~~~~--~~~~~~~~~~~~l~ 288 (883)
+|+|.|..|+||||+|+.+... .+..=..++.++...-+. -...-..+.... .-.. ++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 5899999999999999988863 222111233444332222 122211222211 1111 34567777888888
Q ss_pred HHhCCC
Q 047584 289 KQLSRK 294 (883)
Q Consensus 289 ~~L~~k 294 (883)
.+.+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 777655
No 443
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.31 E-value=0.074 Score=53.28 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcc
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+...|.++||+|+||||..+.++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 34678889999999999999999874
No 444
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.30 E-value=0.06 Score=52.68 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.7
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
++|+|+|+.|+||||||+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999987
No 445
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.24 E-value=0.054 Score=50.01 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=30.6
Q ss_pred EEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITK 272 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 272 (883)
+|.|-|++|+||||+|+.+....... | | +.-.++++|++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCC
Confidence 68999999999999999999743221 1 2 233567777777654
No 446
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.23 E-value=0.29 Score=54.34 Aligned_cols=88 Identities=15% Similarity=0.217 Sum_probs=55.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC-HHHHHHHHHHHhccC-------CCCCCChH-----
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD-VKGLTRTILSSITKQ-------TVDNNDLN----- 281 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~il~~l~~~-------~~~~~~~~----- 281 (883)
-.-++|.|.+|+|||+|+.++.+... +.+-+.++++-+++... +.++..++...=... +.+.....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 46789999999999999999887532 23347888888877653 445555544321100 11111111
Q ss_pred HHHHHHHHHh---CCCcEEEEEeCC
Q 047584 282 FLQEELKKQL---SRKKFLLVLDDV 303 (883)
Q Consensus 282 ~~~~~l~~~L---~~kr~LlVlDdv 303 (883)
.....+.+++ +++.+|+++||+
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCh
Confidence 1223455665 468999999999
No 447
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.22 E-value=0.075 Score=64.03 Aligned_cols=175 Identities=18% Similarity=0.132 Sum_probs=80.3
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCC---CCCChHHHHHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTV---DNNDLNFLQEELKKQ 290 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~ 290 (883)
..+++.|+|+.+.||||+.+.+.-..-. ..+..+|++..... -.++..|...++.... ...+...-...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~m---aq~G~~vpa~~~~~-i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALM---AKSGLPIPANEPSE-IPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHH---HHhCCCcccCCCcc-ccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 3578999999999999999998642110 01111222221100 0011111111111100 000111111112222
Q ss_pred hC--CCcEEEEEeCCCCC-ChhhHhhh----cccccCCCCCcEEEEeCCChhHHHhcCCCcc---EeCCCCCHHhHHHHH
Q 047584 291 LS--RKKFLLVLDDVWNE-NYTDWARL----SLPFQAGAQGSKIVVTTRNEEVAKIMSLDQA---YELKSLSTEDCLSVL 360 (883)
Q Consensus 291 L~--~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~ilvTTR~~~va~~~~~~~~---~~l~~L~~~~~~~Lf 360 (883)
+. ..+-|+++|..... +..+-..+ ...+. ..|+.+|+||...+++........ ..+.. +. +... +
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~-d~-~~l~-~ 476 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEF-DE-ETLR-P 476 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEE-ec-CcCc-E
Confidence 22 47789999998642 22222222 22232 247899999999887765432211 11111 11 1100 1
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCC
Q 047584 361 AQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGK 404 (883)
Q Consensus 361 ~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~ 404 (883)
..+...+. + -...|-.|++++ |+|-.+.--|.-+-..
T Consensus 477 ~Ykl~~G~--~----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 477 TYRLLIGI--P----GKSNAFEIAKRL-GLPENIIEEAKKLIGE 513 (782)
T ss_pred EEEEeeCC--C----CCcHHHHHHHHh-CcCHHHHHHHHHHHhh
Confidence 11111110 0 134577787777 7888877777665544
No 448
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.19 E-value=0.15 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 449
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.16 E-value=0.43 Score=46.85 Aligned_cols=119 Identities=16% Similarity=0.090 Sum_probs=56.1
Q ss_pred EEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCC---CCCChHHHHHHHHHHhCC
Q 047584 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTV---DNNDLNFLQEELKKQLSR 293 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~L~~ 293 (883)
++.|+|+.|.||||+.+.+.-... -.+-.+.+| +.. +.+ .....++..+..... .......-...+...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~-la~~G~~v~--a~~-~~~-~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI-MAQIGSFVP--AES-AEL-PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH-HHHhCCCee--ehh-eEe-cccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 478999999999999999984321 111111111 110 000 000011111111100 011111111234444443
Q ss_pred --CcEEEEEeCCCCC-ChhhHh----hhcccccCCCCCcEEEEeCCChhHHHhcC
Q 047584 294 --KKFLLVLDDVWNE-NYTDWA----RLSLPFQAGAQGSKIVVTTRNEEVAKIMS 341 (883)
Q Consensus 294 --kr~LlVlDdv~~~-~~~~~~----~l~~~l~~~~~gs~ilvTTR~~~va~~~~ 341 (883)
++-|+++|..-.. +..+-. .+...+.. ..+..+|++|...++...+.
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 7899999998542 112111 12222222 23678999999988777653
No 450
>PRK13949 shikimate kinase; Provisional
Probab=93.15 E-value=0.06 Score=51.94 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
-|.|+|++|+||||+++.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 451
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.15 E-value=0.53 Score=50.08 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=40.8
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCC-CHHHHHHHH
Q 047584 199 EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDF-DVKGLTRTI 266 (883)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i 266 (883)
++++.+..-. +-..++|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.+++.++
T Consensus 146 rvID~l~Pi~-----kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 146 RVLDTLFPVV-----KGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred hhhhcccccc-----CCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 4555554332 23579999999999999999999842 33578888887754 344555554
No 452
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.11 E-value=0.057 Score=29.70 Aligned_cols=14 Identities=50% Similarity=0.641 Sum_probs=4.9
Q ss_pred ccEEeccCCCcccc
Q 047584 626 LRYLNLSGTVIRSL 639 (883)
Q Consensus 626 L~~L~L~~~~i~~l 639 (883)
|+.|+|++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444443
No 453
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.10 E-value=0.066 Score=48.14 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.9
Q ss_pred EEEEecCCchHHHHHHHHhcch
Q 047584 218 IPIIGMGGLGKTTLAQLVYNDK 239 (883)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~~ 239 (883)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 454
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.09 E-value=0.63 Score=47.95 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=36.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSS 269 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~ 269 (883)
-.++.|.|.+|+|||++|.++..+.- ..+=..++|++... +..++...++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 46899999999999999999876422 22123577777655 466666666544
No 455
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.08 E-value=0.43 Score=52.86 Aligned_cols=85 Identities=22% Similarity=0.306 Sum_probs=50.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC-CCHHHHHHHHHHHhcc-------CCCCCCChHHH---
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED-FDVKGLTRTILSSITK-------QTVDNNDLNFL--- 283 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~-------~~~~~~~~~~~--- 283 (883)
-..++|+|..|+|||||++.+.+.. +.+..+++.+++. ..+.+.+.+....=.. ...+.......
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999998732 3445566666554 3344545543321000 01111112111
Q ss_pred --HHHHHHHh--CCCcEEEEEeCC
Q 047584 284 --QEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 284 --~~~l~~~L--~~kr~LlVlDdv 303 (883)
...+.+++ +++++||++||+
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCH
Confidence 22344555 588999999999
No 456
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=2.5 Score=49.15 Aligned_cols=98 Identities=21% Similarity=0.195 Sum_probs=62.9
Q ss_pred cceecchhhHHHHHHHHcCCC------CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDD------SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
.++=|.++-+..|.+-+.-+= ..+-.+.+-|.++|++|.|||-||++|+.. .. ..|++|-.+ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH----H
Confidence 567788988888887764310 012223567899999999999999999973 22 345666553 2
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCC
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWN 305 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 305 (883)
++..- -+ .+.+.+.+...+.=..++++|.||.+.+
T Consensus 741 LLNMY----VG-----qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 LLNMY----VG-----QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHH----hc-----chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 22221 11 2234445555555567899999999965
No 457
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.07 E-value=0.69 Score=44.24 Aligned_cols=118 Identities=17% Similarity=0.092 Sum_probs=59.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEE---EEEeCCCCCHHHHHHHHHHHh---ccC-CCCCCC-------h
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKA---WTCVSEDFDVKGLTRTILSSI---TKQ-TVDNND-------L 280 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---wv~~s~~~~~~~~~~~il~~l---~~~-~~~~~~-------~ 280 (883)
...|-|++..|.||||.|..+.- +...+=-.++ |+.-.....-...+..+.-.+ +.. .+...+ .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35788888899999999987765 2322222222 222221223333333320000 000 011111 1
Q ss_pred HHHHHHHHHHhCC-CcEEEEEeCCCCC---ChhhHhhhcccccCCCCCcEEEEeCCCh
Q 047584 281 NFLQEELKKQLSR-KKFLLVLDDVWNE---NYTDWARLSLPFQAGAQGSKIVVTTRNE 334 (883)
Q Consensus 281 ~~~~~~l~~~L~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 334 (883)
.......++.+.. +-=|+|||.+-.. ..-+.+.+...+.....+.-||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1222334445544 4559999998321 1123345555555566677899999985
No 458
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.05 E-value=0.086 Score=51.72 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=27.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEE
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTC 252 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 252 (883)
.+++.|+|+.|+|||||++.+.. .....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 37899999999999999999987 3445564444443
No 459
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.05 E-value=0.14 Score=52.40 Aligned_cols=64 Identities=25% Similarity=0.269 Sum_probs=40.6
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHH
Q 047584 198 KEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRT 265 (883)
Q Consensus 198 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 265 (883)
.+|+..+... .++..||+|.|.||+|||||.-.+......+++=-.++=|.-|.+++--.++.+
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 3555556443 235689999999999999999988875433333233444554555554444443
No 460
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.04 E-value=0.41 Score=47.45 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=21.2
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..|+|.|..|+||||+|+.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999874
No 461
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.01 E-value=0.062 Score=50.47 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 462
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.98 E-value=0.17 Score=50.00 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=28.0
Q ss_pred EEEEEecCCchHHHHHHHHhcchhhhcc-CCeEEEEEeCCCCCHH
Q 047584 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDH-FDLKAWTCVSEDFDVK 260 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~ 260 (883)
.|+|+|-||+||||+|..+... -...+ |+ +.=|....++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~-VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYN-VLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCce-EEEEeCCCCCChH
Confidence 6899999999999999885542 12222 43 4446666665544
No 463
>PF13245 AAA_19: Part of AAA domain
Probab=92.96 E-value=0.17 Score=41.21 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=16.7
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
+++.|.|++|.|||+++.....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6788899999999955544443
No 464
>PRK08149 ATP synthase SpaL; Validated
Probab=92.94 E-value=0.41 Score=52.89 Aligned_cols=85 Identities=18% Similarity=0.307 Sum_probs=50.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC-CCHHHHHHHHHHHhccC-------CCCCCChH-----
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED-FDVKGLTRTILSSITKQ-------TVDNNDLN----- 281 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~-------~~~~~~~~----- 281 (883)
-..++|+|..|+|||||++.+++.. .-+.++...+... .++.++..+........ +.+.....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 3678999999999999999998732 2233344444433 34555655555532211 11111111
Q ss_pred HHHHHHHHHh--CCCcEEEEEeCC
Q 047584 282 FLQEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 282 ~~~~~l~~~L--~~kr~LlVlDdv 303 (883)
.....+.+++ ++|.+||++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1223344444 589999999999
No 465
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.94 E-value=0.14 Score=59.77 Aligned_cols=75 Identities=19% Similarity=0.125 Sum_probs=55.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|.++.++.|...+... +.+.++|.+|+||||+|+.+.... ...+|+..+|..- ...+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 67899999998888877433 368899999999999999998742 2334577788665 3346677777777
Q ss_pred HHhcc
Q 047584 268 SSITK 272 (883)
Q Consensus 268 ~~l~~ 272 (883)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 65543
No 466
>PRK14530 adenylate kinase; Provisional
Probab=92.91 E-value=0.069 Score=53.98 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.0
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
+.|.|+|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 467
>PRK13947 shikimate kinase; Provisional
Probab=92.87 E-value=0.066 Score=51.86 Aligned_cols=21 Identities=43% Similarity=0.555 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 468
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.84 E-value=0.013 Score=56.08 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=0.0
Q ss_pred CCCeeEEEEecCCCCCC--CCCCCC-cCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccccc
Q 047584 808 FSNLVTLKFENCGICTA--LPSVGQ-LPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 808 l~~L~~L~L~~~~~~~~--l~~l~~-lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
++.++.|.+.+|...++ +..+++ .|+|+.|+|++|+.|+.-+..-.. .|++|+.|.|.++|
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-----~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-----KLKNLRRLHLYDLP 187 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-----HhhhhHHHHhcCch
No 469
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.80 E-value=0.46 Score=52.67 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=50.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC-HHHHHHHHHHHhccC-------CCCCCChH-----
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD-VKGLTRTILSSITKQ-------TVDNNDLN----- 281 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~il~~l~~~-------~~~~~~~~----- 281 (883)
-..++|+|..|+|||||++++++... .+.++++-+++... +.++..+.+..-... +.+.....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999987422 24556666766543 334444443321110 11111111
Q ss_pred HHHHHHHHHh--CCCcEEEEEeCC
Q 047584 282 FLQEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 282 ~~~~~l~~~L--~~kr~LlVlDdv 303 (883)
.....+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122344555 588999999999
No 470
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.80 E-value=0.092 Score=52.25 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=22.0
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...+|.|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 471
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.79 E-value=0.27 Score=51.26 Aligned_cols=81 Identities=12% Similarity=0.189 Sum_probs=45.2
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
.+|.|.|..|+||||+++.+... +...-..++.+.-...+....+ .++.... .........++..|+..+
T Consensus 81 GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~~-----~q~~v~~---~~~~~~~~~l~~~lR~~P 150 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPGI-----NQVQVNE---KAGLTFARGLRAILRQDP 150 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCCc-----eEEEeCC---cCCcCHHHHHHHHhccCC
Confidence 58999999999999999988652 2111112222221111111110 1111111 111134566777888888
Q ss_pred EEEEEeCCCCC
Q 047584 296 FLLVLDDVWNE 306 (883)
Q Consensus 296 ~LlVlDdv~~~ 306 (883)
=.|+++++.+.
T Consensus 151 D~i~vgEiR~~ 161 (264)
T cd01129 151 DIIMVGEIRDA 161 (264)
T ss_pred CEEEeccCCCH
Confidence 89999999665
No 472
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.78 E-value=1.6 Score=41.06 Aligned_cols=125 Identities=15% Similarity=0.223 Sum_probs=74.1
Q ss_pred eEEEEEecCCchHHHHHHHHhc-------------------chhhhccCC--eEEEEEe--------------------C
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN-------------------DKRVQDHFD--LKAWTCV--------------------S 254 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~-------------------~~~~~~~F~--~~~wv~~--------------------s 254 (883)
-.|+|||+.|+|||||....+- |+.-+..|. .+-+|-- .
T Consensus 37 e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ 116 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116 (228)
T ss_pred ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence 4689999999999999877753 111122221 1222211 1
Q ss_pred C--CCCHHHHHHHHHHHhccCCC------CCCChHHHHHHHHHHhCCCcEEEEEeCC----CCCChhhHhhhcccccCCC
Q 047584 255 E--DFDVKGLTRTILSSITKQTV------DNNDLNFLQEELKKQLSRKKFLLVLDDV----WNENYTDWARLSLPFQAGA 322 (883)
Q Consensus 255 ~--~~~~~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~L~~kr~LlVlDdv----~~~~~~~~~~l~~~l~~~~ 322 (883)
. ..+.....+..+.+++.... .-.--++-.-.|.+.+...+-+++-|.- ....-+...++...+. ..
T Consensus 117 ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-re 195 (228)
T COG4181 117 GESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-RE 195 (228)
T ss_pred CCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-hh
Confidence 1 23455566677777654321 1122344455688888888888888854 2222233444444443 34
Q ss_pred CCcEEEEeCCChhHHHhcC
Q 047584 323 QGSKIVVTTRNEEVAKIMS 341 (883)
Q Consensus 323 ~gs~ilvTTR~~~va~~~~ 341 (883)
.|+..|+.|.++.+|..|.
T Consensus 196 ~G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 196 RGTTLVLVTHDPQLAARCD 214 (228)
T ss_pred cCceEEEEeCCHHHHHhhh
Confidence 6888999999999988764
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.75 E-value=0.082 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.7
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999763
No 474
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.74 E-value=0.084 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+|+|+|+.|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 475
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.70 E-value=0.15 Score=48.09 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=29.2
Q ss_pred hhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 195 TEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+++|.++|.. ++++++|..|+|||||++.+..+
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhh
Confidence 446788888832 68999999999999999999875
No 476
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.69 E-value=0.095 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999999873
No 477
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.69 E-value=0.098 Score=45.55 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.9
Q ss_pred ceEEEEEecCCchHHHHHHHHh
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVY 236 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~ 236 (883)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 478
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.66 E-value=0.43 Score=56.66 Aligned_cols=84 Identities=20% Similarity=0.118 Sum_probs=56.2
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCC-----CCCCChHHHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQT-----VDNNDLNFLQEELK 288 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 288 (883)
.-+++-|+|.+|+||||||.+++.. ....=..++|+...+.++.. .+++++... ......++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 4689999999999999999887652 22333567999888777743 445554321 12334455555565
Q ss_pred HHhC-CCcEEEEEeCCC
Q 047584 289 KQLS-RKKFLLVLDDVW 304 (883)
Q Consensus 289 ~~L~-~kr~LlVlDdv~ 304 (883)
..+. ++.-|||+|-+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 5554 457789999984
No 479
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.65 E-value=0.56 Score=47.31 Aligned_cols=118 Identities=11% Similarity=0.019 Sum_probs=58.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCC---C----CChHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVD---N----NDLNFLQEEL 287 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~---~----~~~~~~~~~l 287 (883)
.+++.|.|+.|.||||+.+.+.... +..+-.+.+|..-..- .....|...+...+.- . .++.++...+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~~~~----~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 105 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASSATL----SIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL 105 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCceEE----eccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence 3688999999999999999987632 1111122222210000 0011111111111100 0 1122222222
Q ss_pred HHHhCCCcEEEEEeCCCCCC----hhh-HhhhcccccCCCCCcEEEEeCCChhHHHhc
Q 047584 288 KKQLSRKKFLLVLDDVWNEN----YTD-WARLSLPFQAGAQGSKIVVTTRNEEVAKIM 340 (883)
Q Consensus 288 ~~~L~~kr~LlVlDdv~~~~----~~~-~~~l~~~l~~~~~gs~ilvTTR~~~va~~~ 340 (883)
+. .+++-|+++|...... ... ...+...+... .++.+|++|...+++...
T Consensus 106 ~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 106 SN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred Hh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 21 2578999999974321 111 11233333332 578899999998887654
No 480
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.65 E-value=0.41 Score=53.24 Aligned_cols=85 Identities=19% Similarity=0.332 Sum_probs=48.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC-CCHHHHHHHHHHHhccC-------CCCCCChH-----
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED-FDVKGLTRTILSSITKQ-------TVDNNDLN----- 281 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~-------~~~~~~~~----- 281 (883)
-..++|.|..|+|||||++.+...... +..+.+-+.+. ..+.++.+.+...-... +.+.....
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 468999999999999999999864321 23333334433 34444444443321100 11111111
Q ss_pred HHHHHHHHHh--CCCcEEEEEeCC
Q 047584 282 FLQEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 282 ~~~~~l~~~L--~~kr~LlVlDdv 303 (883)
.....+.+++ +++.+|+++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1122344555 588999999998
No 481
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.63 E-value=0.1 Score=51.19 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+.++|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999999863
No 482
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.60 E-value=0.12 Score=49.05 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
|++|+|+.|+|||||+.++...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 483
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.60 E-value=0.47 Score=52.52 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=51.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCCCChHH----
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDF-DVKGLTRTILSSITKQ-------TVDNNDLNF---- 282 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~---- 282 (883)
-..++|.|..|+|||||.+.+++... -+.++++-+++.. .+.++....+..-... +.+......
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999998432 3567788787764 2344443332221100 111111111
Q ss_pred -HHHHHHHHh--CCCcEEEEEeCC
Q 047584 283 -LQEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 283 -~~~~l~~~L--~~kr~LlVlDdv 303 (883)
....+.+++ +++.+|+++||+
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 112344444 589999999999
No 484
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.59 E-value=0.16 Score=49.92 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=30.8
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhc
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|-+..+..+.-..... .-+.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC--------CCeEEECCCCCCHHHHHHHHHH
Confidence 45788888887776655432 5699999999999999999964
No 485
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.59 E-value=0.23 Score=51.19 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=48.3
Q ss_pred ceEEEEEecCCchHHHHH-HHHhcchhhhccCCeE-EEEEeCCCC-CHHHHHHHHHHHhccC-------CCCCCChHH--
Q 047584 215 FAVIPIIGMGGLGKTTLA-QLVYNDKRVQDHFDLK-AWTCVSEDF-DVKGLTRTILSSITKQ-------TVDNNDLNF-- 282 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~-- 282 (883)
-.-++|+|.+|+|||+|| ..+.+. .+-+.+ +++-+.+.. .+.++..++.+.-... ..+......
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 357899999999999996 555542 123444 667676654 3455555554321110 111111111
Q ss_pred ---HHHHHHHHh--CCCcEEEEEeCC
Q 047584 283 ---LQEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 283 ---~~~~l~~~L--~~kr~LlVlDdv 303 (883)
..-.+.+++ +++..|+|+||+
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 122333444 578999999999
No 486
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.58 E-value=0.08 Score=50.86 Aligned_cols=21 Identities=48% Similarity=0.602 Sum_probs=18.3
Q ss_pred EEEEecCCchHHHHHHHHhcc
Q 047584 218 IPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~ 238 (883)
|.|.|.+|+|||||++.++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 487
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.55 E-value=0.08 Score=49.06 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.3
Q ss_pred EEEEecCCchHHHHHHHHhcc
Q 047584 218 IPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~ 238 (883)
|+|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999873
No 488
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.54 E-value=0.2 Score=56.45 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=53.0
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEE-EEEeCCCCCHHHHHHHHHHHhc----cC
Q 047584 199 EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKA-WTCVSEDFDVKGLTRTILSSIT----KQ 273 (883)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~~~~~~~~il~~l~----~~ 273 (883)
+++++|..- +.-.-..|+|++|+|||||++.+.+.. ...+-++.+ .+-|.+.. +++ .++-+.+. ..
T Consensus 405 RvIDll~PI-----GkGQR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivvLIgERp--eEV-tdm~rsVkgeVVas 475 (672)
T PRK12678 405 RVIDLIMPI-----GKGQRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVVLVDERP--EEV-TDMQRSVKGEVIAS 475 (672)
T ss_pred eeeeeeccc-----ccCCEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCch--hhH-HHHHHhccceEEEE
Confidence 455555432 233568899999999999999999832 122334443 44455443 222 22333331 11
Q ss_pred CCCCCC-----hHHHHHHHHHHh--CCCcEEEEEeCC
Q 047584 274 TVDNND-----LNFLQEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 274 ~~~~~~-----~~~~~~~l~~~L--~~kr~LlVlDdv 303 (883)
+.+... ...+.-.+.+++ +++.+||++|++
T Consensus 476 T~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 476 TFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 222111 112223344555 688999999998
No 489
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.54 E-value=0.23 Score=53.12 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=55.9
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCC-CCCChHHHHHHHHHHhCCC
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTV-DNNDLNFLQEELKKQLSRK 294 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~L~~k 294 (883)
..+.|+|..|+|||||++.+.... ... ..++.+.-........ .... ++..... .....-...+.+...|+..
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~--~~~-~~iv~ied~~El~~~~--~~~~-~l~~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEI--PKD-ERIITIEDTREIFLPH--PNYV-HLFYSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccC--Ccc-ccEEEEcCccccCCCC--CCEE-EEEecCCCCCcCccCHHHHHHHHhcCC
Confidence 689999999999999999888632 111 1222221111111110 0000 0000000 0111122345566677788
Q ss_pred cEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHHH
Q 047584 295 KFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAK 338 (883)
Q Consensus 295 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 338 (883)
+=.||+|.+.+. +.+..+ .....+..| ++.|+...+++.
T Consensus 219 pd~ii~gE~r~~--e~~~~l-~a~~~g~~~--~i~T~Ha~~~~~ 257 (308)
T TIGR02788 219 PDRIILGELRGD--EAFDFI-RAVNTGHPG--SITTLHAGSPEE 257 (308)
T ss_pred CCeEEEeccCCH--HHHHHH-HHHhcCCCe--EEEEEeCCCHHH
Confidence 888999999764 455433 333322222 466776654433
No 490
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.54 E-value=0.18 Score=53.78 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=28.9
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHH
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGL 262 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 262 (883)
+++.+.|-||+||||+|.+..-. ....=..+.-|+.....++.++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~--~A~~G~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA--LARRGKRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTS-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH--HhhCCCCeeEeecCCCccHHHH
Confidence 68999999999999999777653 2222233555655544444333
No 491
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.53 E-value=0.25 Score=57.82 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=49.3
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|.++.++.+...+... +.+.++|++|+||||+|+.+.+... ...|...+++. ....+...+++.+.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~~-n~~~~~~~~~~~v~ 87 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVYP-NPEDPNMPRIVEVP 87 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEEe-CCCCCchHHHHHHH
Confidence 67899999888887777543 2456999999999999999987321 22333333332 22234556677776
Q ss_pred HHhcc
Q 047584 268 SSITK 272 (883)
Q Consensus 268 ~~l~~ 272 (883)
.+++.
T Consensus 88 ~~~g~ 92 (608)
T TIGR00764 88 AGEGR 92 (608)
T ss_pred Hhhch
Confidence 66653
No 492
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.52 E-value=0.44 Score=53.30 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=54.4
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhc--c------C------CCCCCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDF-DVKGLTRTILSSIT--K------Q------TVDNND 279 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~--~------~------~~~~~~ 279 (883)
-.-++|.|.+|+|||+|+.++.... .+.+=+.++++-+++.. .+.++..++...-. . . ..+...
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~-~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 239 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHH-HHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCH
Confidence 4578999999999999999888741 11112678888887764 34566666554110 0 0 011111
Q ss_pred hH-----HHHHHHHHHhC--CC-cEEEEEeCC
Q 047584 280 LN-----FLQEELKKQLS--RK-KFLLVLDDV 303 (883)
Q Consensus 280 ~~-----~~~~~l~~~L~--~k-r~LlVlDdv 303 (883)
.. .....+.+++. ++ .+||++||+
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~Dsl 271 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNI 271 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 11 22334667773 44 999999999
No 493
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.51 E-value=0.26 Score=48.98 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 494
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.50 E-value=0.87 Score=48.66 Aligned_cols=49 Identities=22% Similarity=0.158 Sum_probs=33.6
Q ss_pred cEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 345 AYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 345 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
++++++++.+|+..++..+.-..--. .....+...+++..-.+|.|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~-~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLR-SRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccc-cCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998776432211 11233556677777779998543
No 495
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.43 E-value=0.073 Score=51.10 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.6
Q ss_pred EEEEecCCchHHHHHHHHhcc
Q 047584 218 IPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~ 238 (883)
|.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998873
No 496
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.40 E-value=0.72 Score=52.01 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=47.1
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCC-----CCCCChHHHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQT-----VDNNDLNFLQEELK 288 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 288 (883)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ..++... ++.++... ....+.+.+...+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 3579999999999999999999874 2222235788876543 3333222 33333211 01233444433332
Q ss_pred HHhCCCcEEEEEeCC
Q 047584 289 KQLSRKKFLLVLDDV 303 (883)
Q Consensus 289 ~~L~~kr~LlVlDdv 303 (883)
+ .+.-++|+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 34557788876
No 497
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.40 E-value=0.088 Score=49.90 Aligned_cols=20 Identities=50% Similarity=0.747 Sum_probs=18.7
Q ss_pred EEEEecCCchHHHHHHHHhc
Q 047584 218 IPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~ 237 (883)
|.|+|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999986
No 498
>PRK05922 type III secretion system ATPase; Validated
Probab=92.39 E-value=0.76 Score=50.90 Aligned_cols=84 Identities=12% Similarity=0.202 Sum_probs=48.4
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCC-CHHHHHHHHHHHhccCC-------CCCCChH-----H
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDF-DVKGLTRTILSSITKQT-------VDNNDLN-----F 282 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~-------~~~~~~~-----~ 282 (883)
..++|+|..|+|||||.+.+.+.. ..+....+.+++.. .+.+.+.+......... .+..... .
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 568999999999999999998742 22344444444432 33444444433322111 1111111 1
Q ss_pred HHHHHHHHh--CCCcEEEEEeCC
Q 047584 283 LQEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 283 ~~~~l~~~L--~~kr~LlVlDdv 303 (883)
....+.+++ +++.+|+++||+
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 223345555 588999999999
No 499
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.38 E-value=4.3 Score=40.43 Aligned_cols=154 Identities=20% Similarity=0.220 Sum_probs=81.2
Q ss_pred ceec-chhhHHHHHHHHcCCCC-------CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 189 KVYG-RETEKKEIVELLLKDDS-------RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 189 ~~vG-r~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
+++| -+..+++|.+.+.-+.. -+-...+-+.++|++|.|||-||++|+++ .++-|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----
Confidence 4554 46666776665532211 12345677899999999999999999973 33556777653
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCCCh-----------hh---Hhhhcc---cccCCC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQL-SRKKFLLVLDDVWNENY-----------TD---WARLSL---PFQAGA 322 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~-----------~~---~~~l~~---~l~~~~ 322 (883)
++.+..+ +.. ..+...|.-.- ..-+.+|++|.+.+... +. .-++.. .|.. .
T Consensus 216 elvqk~i----geg------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea-t 284 (404)
T KOG0728|consen 216 ELVQKYI----GEG------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA-T 284 (404)
T ss_pred HHHHHHh----hhh------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc-c
Confidence 2222111 110 00111111111 23467788887754211 10 111111 2222 3
Q ss_pred CCcEEEEeCCChhHHHh--cC---CCccEeCCCCCHHhHHHHHHhhh
Q 047584 323 QGSKIVVTTRNEEVAKI--MS---LDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 323 ~gs~ilvTTR~~~va~~--~~---~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
+.-+||..|..-++... .. ..+-++.++-+++.-.++++-+.
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 45577776655444332 12 23567788877777777776554
No 500
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.38 E-value=0.3 Score=49.42 Aligned_cols=24 Identities=42% Similarity=0.636 Sum_probs=21.5
Q ss_pred eEEEEEecCCchHHHHHHHHhcch
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDK 239 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~ 239 (883)
.-|+|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 578999999999999999999763
Done!