Query 047584
Match_columns 883
No_of_seqs 574 out of 3887
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 22:13:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-48 4.9E-53 452.3 22.5 311 191-524 131-468 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.4E-39 4.9E-44 378.5 20.5 286 189-521 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 4.8E-38 1.6E-42 404.2 23.4 306 188-525 124-450 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4.9E-35 1.7E-39 344.6 29.2 303 188-524 124-449 (591)
5 4fcg_A Uncharacterized protein 99.9 3.3E-21 1.1E-25 208.4 14.8 230 599-871 79-310 (328)
6 4fmz_A Internalin; leucine ric 99.8 2.9E-20 1E-24 203.3 20.3 139 546-700 44-182 (347)
7 4fmz_A Internalin; leucine ric 99.8 7.7E-20 2.6E-24 200.0 19.7 279 545-873 65-344 (347)
8 2id5_A Lingo-1, leucine rich r 99.8 3.8E-20 1.3E-24 211.8 17.6 298 544-873 30-331 (477)
9 1ogq_A PGIP-2, polygalacturona 99.8 7.5E-21 2.6E-25 204.3 10.6 233 592-845 67-304 (313)
10 3v47_A TOLL-like receptor 5B a 99.8 2.3E-20 7.9E-25 212.3 13.0 295 544-873 28-406 (455)
11 2id5_A Lingo-1, leucine rich r 99.8 3.2E-19 1.1E-23 204.1 22.5 270 570-872 31-306 (477)
12 3rgz_A Protein brassinosteroid 99.8 1.5E-20 5.2E-25 227.4 11.9 86 780-873 628-715 (768)
13 4eco_A Uncharacterized protein 99.8 7.2E-21 2.5E-25 224.9 7.9 257 593-872 198-498 (636)
14 4eco_A Uncharacterized protein 99.8 4.2E-20 1.4E-24 218.4 14.4 303 545-873 248-598 (636)
15 4fcg_A Uncharacterized protein 99.8 3.3E-20 1.1E-24 200.5 11.4 221 570-842 80-311 (328)
16 4ecn_A Leucine-rich repeat pro 99.8 1.1E-19 3.9E-24 218.3 16.7 302 545-873 490-838 (876)
17 3o6n_A APL1; leucine-rich repe 99.8 5.9E-20 2E-24 204.3 13.1 281 546-873 45-350 (390)
18 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-20 4E-25 202.8 7.1 250 601-877 50-306 (313)
19 3rgz_A Protein brassinosteroid 99.8 3.3E-20 1.1E-24 224.5 10.2 302 546-875 394-740 (768)
20 3vq2_A TLR4, TOLL-like recepto 99.8 7.2E-19 2.5E-23 207.7 21.3 148 543-698 29-180 (606)
21 4ecn_A Leucine-rich repeat pro 99.8 5.1E-19 1.7E-23 212.6 18.8 298 545-873 447-817 (876)
22 3oja_B Anopheles plasmodium-re 99.8 1.4E-19 4.7E-24 212.7 13.2 262 567-873 71-356 (597)
23 1o6v_A Internalin A; bacterial 99.8 1.4E-18 4.9E-23 197.8 20.7 79 782-872 285-363 (466)
24 1o6v_A Internalin A; bacterial 99.8 1.1E-18 3.6E-23 198.9 18.0 279 546-872 46-341 (466)
25 3o6n_A APL1; leucine-rich repe 99.8 2.7E-19 9.4E-24 198.9 11.9 267 569-873 43-329 (390)
26 3v47_A TOLL-like receptor 5B a 99.8 8.3E-19 2.8E-23 199.4 15.5 269 571-872 30-381 (455)
27 3bz5_A Internalin-J, INLJ; leu 99.8 3.9E-18 1.3E-22 192.7 20.3 253 546-850 42-304 (457)
28 3j0a_A TOLL-like receptor 5; m 99.8 4.2E-18 1.4E-22 208.3 21.9 300 544-872 22-372 (844)
29 3vq2_A TLR4, TOLL-like recepto 99.8 3.9E-18 1.3E-22 201.4 20.7 123 571-701 32-159 (606)
30 3bz5_A Internalin-J, INLJ; leu 99.8 7.5E-18 2.6E-22 190.3 20.7 254 566-876 37-300 (457)
31 3oja_B Anopheles plasmodium-re 99.8 5.4E-19 1.8E-23 207.6 11.5 260 569-873 49-335 (597)
32 2z7x_B TOLL-like receptor 1, v 99.8 3.8E-18 1.3E-22 197.4 18.0 127 544-682 19-149 (520)
33 3t6q_A CD180 antigen; protein- 99.8 1.4E-18 4.9E-23 205.1 13.2 295 547-873 255-558 (606)
34 3t6q_A CD180 antigen; protein- 99.8 7E-18 2.4E-22 199.2 18.4 246 602-872 255-510 (606)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-17 3.8E-22 195.3 19.1 126 545-682 51-180 (562)
36 3zyi_A Leucine-rich repeat-con 99.8 5.9E-18 2E-22 191.9 16.2 221 601-873 75-301 (452)
37 2z81_A CD282 antigen, TOLL-lik 99.8 1E-17 3.6E-22 195.2 18.6 150 544-700 24-177 (549)
38 1xku_A Decorin; proteoglycan, 99.8 7.8E-18 2.7E-22 182.5 16.3 246 601-873 52-304 (330)
39 2z66_A Variable lymphocyte rec 99.8 2.7E-18 9.1E-23 184.1 12.4 198 601-842 28-233 (306)
40 2z63_A TOLL-like receptor 4, v 99.7 9.1E-18 3.1E-22 196.7 17.7 147 543-697 25-175 (570)
41 3zyj_A Leucine-rich repeat-con 99.7 9.8E-18 3.3E-22 189.4 17.3 221 601-873 64-290 (440)
42 2z7x_B TOLL-like receptor 1, v 99.7 6.4E-18 2.2E-22 195.5 15.5 119 571-700 21-143 (520)
43 2z80_A TOLL-like receptor 2, v 99.7 2.6E-18 8.9E-23 188.2 11.5 249 601-873 52-312 (353)
44 3j0a_A TOLL-like receptor 5; m 99.7 2.3E-17 7.9E-22 201.7 20.7 282 569-872 22-348 (844)
45 1xku_A Decorin; proteoglycan, 99.7 4.6E-17 1.6E-21 176.4 20.3 264 571-872 52-329 (330)
46 2ft3_A Biglycan; proteoglycan, 99.7 3.3E-17 1.1E-21 177.7 18.9 245 596-873 73-331 (332)
47 1ziw_A TOLL-like receptor 3; i 99.7 1.3E-17 4.3E-22 199.8 16.8 150 543-700 22-176 (680)
48 2z81_A CD282 antigen, TOLL-lik 99.7 5.5E-18 1.9E-22 197.6 12.3 150 571-729 26-180 (549)
49 2ft3_A Biglycan; proteoglycan, 99.7 7E-17 2.4E-21 175.1 19.6 269 544-843 52-331 (332)
50 2z63_A TOLL-like receptor 4, v 99.7 1.8E-17 6.1E-22 194.2 14.0 128 546-681 52-187 (570)
51 3o53_A Protein LRIM1, AGAP0063 99.7 2.2E-18 7.6E-23 185.5 4.3 241 599-878 32-278 (317)
52 1ziw_A TOLL-like receptor 3; i 99.7 6.6E-17 2.3E-21 193.6 17.4 278 571-872 25-339 (680)
53 2z66_A Variable lymphocyte rec 99.7 1.8E-17 6E-22 177.7 10.1 224 570-843 27-259 (306)
54 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.2E-16 4E-21 186.6 17.1 281 571-873 52-439 (562)
55 2z80_A TOLL-like receptor 2, v 99.7 3.5E-17 1.2E-21 179.2 10.8 249 571-844 52-313 (353)
56 1ozn_A Reticulon 4 receptor; N 99.7 2.7E-17 9.3E-22 174.2 9.0 99 601-700 32-134 (285)
57 3oja_A Leucine-rich immune mol 99.7 1.1E-17 3.6E-22 190.9 5.8 236 599-870 32-270 (487)
58 3zyi_A Leucine-rich repeat-con 99.7 1E-16 3.5E-21 181.7 13.3 223 571-820 75-301 (452)
59 3g06_A SSPH2 (leucine-rich rep 99.7 1.3E-15 4.4E-20 177.2 22.0 235 571-873 61-295 (622)
60 1ozn_A Reticulon 4 receptor; N 99.7 1.6E-16 5.5E-21 168.2 12.7 94 604-700 14-110 (285)
61 4g8a_A TOLL-like receptor 4; l 99.7 6.7E-16 2.3E-20 183.3 19.1 132 542-682 48-184 (635)
62 3zyj_A Leucine-rich repeat-con 99.7 2.2E-16 7.5E-21 178.3 14.1 223 571-820 64-290 (440)
63 2qen_A Walker-type ATPase; unk 99.7 2.6E-15 9E-20 164.0 21.3 290 187-521 11-349 (350)
64 3qfl_A MLA10; coiled-coil, (CC 99.7 1.1E-16 3.7E-21 141.4 7.6 79 12-90 2-82 (115)
65 1h6u_A Internalin H; cell adhe 99.7 2E-16 6.9E-21 169.2 11.1 189 599-842 39-227 (308)
66 1wwl_A Monocyte differentiatio 99.7 1.2E-17 4.3E-22 179.2 1.1 219 603-872 65-306 (312)
67 1w5s_A Origin recognition comp 99.6 1.5E-15 5.2E-20 170.0 17.6 313 186-516 20-387 (412)
68 2xwt_C Thyrotropin receptor; s 99.6 4.9E-16 1.7E-20 159.8 10.1 199 602-875 32-239 (239)
69 3o53_A Protein LRIM1, AGAP0063 99.6 4.4E-17 1.5E-21 175.3 2.2 246 569-851 32-281 (317)
70 3g06_A SSPH2 (leucine-rich rep 99.6 9.1E-15 3.1E-19 170.1 20.9 211 601-872 61-271 (622)
71 2fna_A Conserved hypothetical 99.6 1.8E-14 6.1E-19 157.9 21.9 290 187-520 12-356 (357)
72 1p9a_G Platelet glycoprotein I 99.6 5.6E-15 1.9E-19 156.3 16.8 198 598-843 7-206 (290)
73 2o6q_A Variable lymphocyte rec 99.6 5.2E-15 1.8E-19 155.1 16.2 196 602-843 17-216 (270)
74 1wwl_A Monocyte differentiatio 99.6 7.1E-16 2.4E-20 165.5 9.0 202 599-843 93-307 (312)
75 2z62_A TOLL-like receptor 4, v 99.6 2.7E-15 9.2E-20 158.0 13.2 202 601-843 28-235 (276)
76 1jl5_A Outer protein YOPM; leu 99.6 7.6E-15 2.6E-19 165.5 17.5 245 597-873 149-407 (454)
77 3oja_A Leucine-rich immune mol 99.6 5.7E-16 2E-20 176.5 8.1 223 615-874 21-249 (487)
78 1jl5_A Outer protein YOPM; leu 99.6 1.5E-15 5.2E-20 171.3 10.8 225 569-842 9-247 (454)
79 2z62_A TOLL-like receptor 4, v 99.6 1.3E-14 4.3E-19 152.8 12.5 215 605-871 11-233 (276)
80 3rfs_A Internalin B, repeat mo 99.5 1.7E-14 5.9E-19 151.3 12.8 202 599-852 39-242 (272)
81 2ast_B S-phase kinase-associat 99.5 2.6E-16 8.7E-21 171.1 -2.0 207 597-819 64-282 (336)
82 4glp_A Monocyte differentiatio 99.5 1.2E-14 4E-19 155.8 10.1 204 599-842 89-304 (310)
83 2ca6_A RAN GTPase-activating p 99.5 9.2E-17 3.1E-21 178.1 -7.0 239 594-842 25-313 (386)
84 4ay9_X Follicle-stimulating ho 99.5 5.4E-14 1.8E-18 153.3 14.9 101 749-871 154-255 (350)
85 1h6u_A Internalin H; cell adhe 99.5 5.9E-14 2E-18 150.0 14.8 118 569-700 39-156 (308)
86 1p9a_G Platelet glycoprotein I 99.5 3.4E-14 1.1E-18 150.3 12.0 199 568-821 7-207 (290)
87 1z7x_W Ribonuclease inhibitor; 99.5 1.9E-16 6.5E-21 180.2 -8.1 80 784-872 313-408 (461)
88 1z7x_W Ribonuclease inhibitor; 99.5 2.6E-16 8.8E-21 179.1 -7.2 308 546-873 28-381 (461)
89 2ca6_A RAN GTPase-activating p 99.5 8.5E-16 2.9E-20 170.3 -3.7 259 566-843 27-341 (386)
90 1m9s_A Internalin B; cell inva 99.5 6.6E-14 2.3E-18 162.7 11.6 172 597-822 39-210 (605)
91 2o6q_A Variable lymphocyte rec 99.5 4.3E-13 1.5E-17 140.4 16.1 177 601-821 37-217 (270)
92 2ast_B S-phase kinase-associat 99.5 5.3E-15 1.8E-19 160.6 1.0 230 571-826 70-310 (336)
93 4g8a_A TOLL-like receptor 4; l 99.4 4.9E-13 1.7E-17 158.5 16.2 122 571-701 52-179 (635)
94 3rfs_A Internalin B, repeat mo 99.4 1.4E-13 5E-18 144.2 9.9 207 568-834 38-248 (272)
95 3m19_A Variable lymphocyte rec 99.4 7.6E-13 2.6E-17 136.9 14.2 174 601-821 14-191 (251)
96 2xwt_C Thyrotropin receptor; s 99.4 4E-13 1.4E-17 138.0 11.5 181 613-872 23-215 (239)
97 4glp_A Monocyte differentiatio 99.4 2.9E-13 1E-17 144.8 10.8 227 599-873 62-305 (310)
98 1h6t_A Internalin B; cell adhe 99.4 8.8E-13 3E-17 139.5 14.0 96 599-700 44-139 (291)
99 3cvr_A Invasion plasmid antige 99.4 3.7E-13 1.3E-17 154.5 11.5 178 601-846 59-244 (571)
100 1h6t_A Internalin B; cell adhe 99.4 1.9E-13 6.5E-18 144.6 8.1 188 600-842 23-210 (291)
101 3ogk_B Coronatine-insensitive 99.4 5.6E-14 1.9E-18 165.2 3.1 259 595-871 264-547 (592)
102 2qby_B CDC6 homolog 3, cell di 99.4 2.5E-11 8.7E-16 134.1 24.1 294 188-503 20-339 (384)
103 3goz_A Leucine-rich repeat-con 99.4 3.3E-14 1.1E-18 155.8 0.6 235 595-843 15-295 (362)
104 2v1u_A Cell division control p 99.4 3.3E-11 1.1E-15 133.3 24.7 296 187-503 18-351 (387)
105 4ay9_X Follicle-stimulating ho 99.4 3.1E-13 1.1E-17 147.3 7.7 221 601-842 30-256 (350)
106 1m9s_A Internalin B; cell inva 99.4 2.4E-13 8.2E-18 157.9 7.0 196 599-850 19-214 (605)
107 1fnn_A CDC6P, cell division co 99.4 1.8E-11 6.2E-16 135.6 20.8 298 187-504 16-352 (389)
108 3ogk_B Coronatine-insensitive 99.4 2.3E-14 8E-19 168.5 -2.9 250 599-873 190-499 (592)
109 1xeu_A Internalin C; cellular 99.4 2.8E-13 9.7E-18 141.0 5.6 168 599-821 17-184 (263)
110 3cvr_A Invasion plasmid antige 99.3 5.3E-12 1.8E-16 144.9 13.9 175 625-873 60-241 (571)
111 2p1m_B Transport inhibitor res 99.3 4.6E-14 1.6E-18 166.0 -4.0 129 547-681 106-245 (594)
112 3m19_A Variable lymphocyte rec 99.3 1.7E-11 5.8E-16 126.7 15.0 173 624-843 14-190 (251)
113 2qby_A CDC6 homolog 1, cell di 99.3 5.5E-11 1.9E-15 131.4 19.8 298 186-503 18-348 (386)
114 3goz_A Leucine-rich repeat-con 99.3 3.5E-13 1.2E-17 147.7 1.2 237 569-824 20-299 (362)
115 4ezg_A Putative uncharacterize 99.3 6.4E-12 2.2E-16 124.6 9.7 100 599-700 42-141 (197)
116 4ezg_A Putative uncharacterize 99.3 2E-11 6.8E-16 121.0 12.1 103 596-700 61-164 (197)
117 2p1m_B Transport inhibitor res 99.2 5E-13 1.7E-17 157.2 -1.7 127 569-701 103-241 (594)
118 2o6s_A Variable lymphocyte rec 99.2 2.2E-11 7.7E-16 121.8 10.6 82 604-689 10-93 (208)
119 1xeu_A Internalin C; cellular 99.2 4.2E-11 1.4E-15 124.4 12.6 98 596-700 36-133 (263)
120 1njg_A DNA polymerase III subu 99.2 1.4E-10 4.8E-15 119.2 16.3 197 188-401 23-231 (250)
121 2xot_A Amphoterin-induced prot 99.2 2.7E-11 9.1E-16 132.5 9.3 93 604-700 21-117 (361)
122 2je0_A Acidic leucine-rich nuc 99.2 2.1E-11 7.1E-16 114.8 7.2 122 571-701 17-146 (149)
123 2ell_A Acidic leucine-rich nuc 99.2 3.5E-11 1.2E-15 115.8 8.9 104 597-703 45-155 (168)
124 1a9n_A U2A', U2A'; complex (nu 99.1 5.4E-11 1.8E-15 115.5 8.4 127 566-703 14-148 (176)
125 2v9t_B SLIT homolog 2 protein 99.1 1.3E-10 4.4E-15 117.2 11.4 98 601-700 32-133 (220)
126 3e6j_A Variable lymphocyte rec 99.1 1.4E-10 4.8E-15 117.8 11.4 122 571-700 40-164 (229)
127 2chg_A Replication factor C sm 99.1 1.1E-09 3.8E-14 110.6 17.7 185 188-398 17-204 (226)
128 2ell_A Acidic leucine-rich nuc 99.1 1.7E-10 5.9E-15 110.9 10.3 137 544-690 22-165 (168)
129 2je0_A Acidic leucine-rich nuc 99.1 4E-11 1.4E-15 112.9 5.2 100 599-700 15-118 (149)
130 3e6j_A Variable lymphocyte rec 99.1 2E-10 6.9E-15 116.6 10.5 98 601-700 40-140 (229)
131 2v9t_B SLIT homolog 2 protein 99.1 2.1E-10 7.1E-15 115.7 10.4 121 571-700 32-157 (220)
132 2v70_A SLIT-2, SLIT homolog 2 99.1 4.3E-10 1.5E-14 113.4 10.2 101 598-700 54-158 (220)
133 4b8c_D Glucose-repressible alc 99.0 1.8E-10 6.3E-15 137.2 8.3 89 593-682 239-327 (727)
134 4b8c_D Glucose-repressible alc 99.0 4.1E-11 1.4E-15 142.9 2.1 102 597-700 220-321 (727)
135 1a9n_A U2A', U2A'; complex (nu 99.0 2.2E-10 7.6E-15 111.1 6.9 99 598-700 16-118 (176)
136 2v70_A SLIT-2, SLIT homolog 2 99.0 9.6E-10 3.3E-14 110.8 11.8 132 544-682 30-164 (220)
137 1dce_A Protein (RAB geranylger 99.0 5.2E-10 1.8E-14 129.1 9.8 101 597-700 459-565 (567)
138 2o6s_A Variable lymphocyte rec 99.0 1.4E-09 4.9E-14 108.5 11.7 88 599-688 50-140 (208)
139 1dce_A Protein (RAB geranylger 99.0 5E-10 1.7E-14 129.3 8.0 95 602-700 442-538 (567)
140 2wfh_A SLIT homolog 2 protein 99.0 1.2E-09 4.3E-14 107.4 9.3 98 601-700 31-131 (193)
141 1w8a_A SLIT protein; signaling 99.0 1.3E-09 4.6E-14 107.2 9.5 76 604-682 11-89 (192)
142 2wfh_A SLIT homolog 2 protein 98.9 2.5E-09 8.7E-14 105.2 10.8 93 604-700 13-107 (193)
143 1sxj_B Activator 1 37 kDa subu 98.9 8.2E-09 2.8E-13 110.8 14.8 185 188-398 21-210 (323)
144 2xot_A Amphoterin-induced prot 98.9 1.7E-09 5.7E-14 118.1 9.1 90 599-690 62-154 (361)
145 1hqc_A RUVB; extended AAA-ATPa 98.9 2.3E-09 7.7E-14 115.3 9.7 268 188-502 12-324 (324)
146 1w8a_A SLIT protein; signaling 98.9 2.6E-09 8.8E-14 105.1 8.6 97 602-700 30-131 (192)
147 2r9u_A Variable lymphocyte rec 98.8 5.3E-09 1.8E-13 100.9 8.8 86 601-688 33-121 (174)
148 2r9u_A Variable lymphocyte rec 98.8 3.3E-09 1.1E-13 102.4 7.2 94 604-701 15-111 (174)
149 3g39_A Variable lymphocyte rec 98.8 6.7E-09 2.3E-13 99.8 8.7 93 604-700 12-107 (170)
150 3sb4_A Hypothetical leucine ri 98.8 1.3E-08 4.5E-13 109.5 10.8 240 600-869 48-304 (329)
151 1ds9_A Outer arm dynein; leuci 98.8 7.5E-11 2.6E-15 116.9 -7.1 102 595-700 42-145 (198)
152 2o6r_A Variable lymphocyte rec 98.8 1.6E-08 5.3E-13 98.1 9.5 98 601-700 28-129 (177)
153 3g39_A Variable lymphocyte rec 98.7 2.2E-08 7.5E-13 96.2 8.3 86 601-688 30-118 (170)
154 1ds9_A Outer arm dynein; leuci 98.7 1.9E-10 6.6E-15 113.9 -6.7 125 566-701 43-180 (198)
155 2o6r_A Variable lymphocyte rec 98.7 6.2E-08 2.1E-12 93.8 10.6 94 603-700 9-105 (177)
156 1iqp_A RFCS; clamp loader, ext 98.7 7.7E-08 2.6E-12 103.4 12.1 186 188-399 25-213 (327)
157 3te6_A Regulatory protein SIR3 98.7 2.1E-07 7.3E-12 97.5 14.8 172 188-365 20-212 (318)
158 1jr3_A DNA polymerase III subu 98.6 3.7E-07 1.3E-11 100.0 15.5 195 188-398 16-221 (373)
159 2chq_A Replication factor C sm 98.5 5.5E-07 1.9E-11 96.2 14.4 181 188-397 17-203 (319)
160 2ifg_A High affinity nerve gro 98.5 2.2E-07 7.4E-12 100.8 8.5 85 597-682 27-114 (347)
161 2ifg_A High affinity nerve gro 98.4 4.4E-07 1.5E-11 98.3 7.9 92 606-700 13-108 (347)
162 1jbk_A CLPB protein; beta barr 98.4 5.9E-07 2E-11 87.9 8.0 45 188-238 22-66 (195)
163 4fdw_A Leucine rich hypothetic 98.4 9.4E-06 3.2E-10 89.2 18.1 238 602-871 136-379 (401)
164 3bos_A Putative DNA replicatio 98.3 7.2E-07 2.5E-11 90.9 7.9 173 188-397 28-216 (242)
165 3pfi_A Holliday junction ATP-d 98.3 1.4E-05 4.7E-10 86.0 18.3 177 188-397 29-226 (338)
166 1sxj_D Activator 1 41 kDa subu 98.3 3.8E-06 1.3E-10 91.1 13.8 195 188-397 37-234 (353)
167 3sb4_A Hypothetical leucine ri 98.2 9.4E-07 3.2E-11 94.9 5.0 102 747-869 224-328 (329)
168 2z4s_A Chromosomal replication 98.2 1E-05 3.4E-10 90.0 13.2 160 215-395 130-303 (440)
169 3pvs_A Replication-associated 98.2 2.3E-05 7.9E-10 86.9 15.9 176 188-395 26-212 (447)
170 1sxj_E Activator 1 40 kDa subu 98.2 5.9E-06 2E-10 89.6 11.0 195 188-398 14-237 (354)
171 4fdw_A Leucine rich hypothetic 98.2 1.8E-05 6.2E-10 86.9 14.9 218 601-842 157-380 (401)
172 3uk6_A RUVB-like 2; hexameric 98.2 3.8E-05 1.3E-09 83.7 17.4 197 188-396 44-301 (368)
173 1a5t_A Delta prime, HOLB; zinc 98.1 3.8E-05 1.3E-09 82.2 16.5 170 194-397 8-204 (334)
174 1sxj_A Activator 1 95 kDa subu 98.1 1.3E-05 4.5E-10 91.2 12.6 195 188-398 39-253 (516)
175 3h4m_A Proteasome-activating n 98.1 2.4E-05 8.1E-10 81.9 12.7 184 188-396 17-229 (285)
176 2qz4_A Paraplegin; AAA+, SPG7, 98.0 5E-05 1.7E-09 78.3 14.7 187 188-397 6-221 (262)
177 3un9_A NLR family member X1; l 98.0 3.6E-07 1.2E-11 99.5 -2.0 83 600-682 71-166 (372)
178 3syl_A Protein CBBX; photosynt 98.0 4E-05 1.4E-09 81.2 13.5 161 189-365 32-218 (309)
179 3u61_B DNA polymerase accessor 98.0 3.3E-05 1.1E-09 82.5 12.4 174 188-394 26-212 (324)
180 1d2n_A N-ethylmaleimide-sensit 97.9 0.00015 5.3E-09 75.0 16.3 171 188-389 33-228 (272)
181 2p65_A Hypothetical protein PF 97.9 1E-05 3.5E-10 78.5 6.1 45 188-238 22-66 (187)
182 3ec2_A DNA replication protein 97.9 2.8E-05 9.4E-10 75.1 8.4 121 193-333 19-142 (180)
183 3eie_A Vacuolar protein sortin 97.9 0.00019 6.4E-09 76.4 15.6 187 188-398 18-228 (322)
184 2ra8_A Uncharacterized protein 97.9 8.6E-06 2.9E-10 87.8 5.1 58 620-679 168-227 (362)
185 2qp9_X Vacuolar protein sortin 97.8 0.00039 1.3E-08 74.9 17.6 187 188-398 51-261 (355)
186 1l8q_A Chromosomal replication 97.8 0.00022 7.4E-09 76.1 15.5 154 215-392 37-202 (324)
187 3n70_A Transport activator; si 97.8 1.9E-05 6.6E-10 73.1 6.3 114 189-333 2-115 (145)
188 1sxj_C Activator 1 40 kDa subu 97.8 0.00018 6E-09 77.3 14.5 181 188-394 25-208 (340)
189 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00098 3.3E-08 70.7 19.7 188 188-398 12-223 (322)
190 3e4g_A ATP synthase subunit S, 97.7 4.3E-06 1.5E-10 79.1 0.2 37 810-846 115-153 (176)
191 2ra8_A Uncharacterized protein 97.7 1.3E-05 4.6E-10 86.3 4.1 17 618-634 133-149 (362)
192 3e4g_A ATP synthase subunit S, 97.7 1.8E-05 6.2E-10 74.8 4.3 85 601-685 61-153 (176)
193 3pxg_A Negative regulator of g 97.7 0.00016 5.6E-09 81.0 12.8 145 188-364 180-338 (468)
194 3d8b_A Fidgetin-like protein 1 97.7 0.00031 1.1E-08 75.8 14.4 187 188-398 84-295 (357)
195 3un9_A NLR family member X1; l 97.7 1E-05 3.6E-10 87.9 2.3 83 600-682 125-222 (372)
196 3b9p_A CG5977-PA, isoform A; A 97.7 0.0011 3.8E-08 69.5 17.6 183 188-397 21-232 (297)
197 2w58_A DNAI, primosome compone 97.7 5.3E-05 1.8E-09 74.6 6.6 119 195-333 36-158 (202)
198 3rw6_A Nuclear RNA export fact 97.6 3.5E-05 1.2E-09 78.6 5.2 78 599-677 168-257 (267)
199 1qvr_A CLPB protein; coiled co 97.6 7.5E-05 2.6E-09 90.6 8.7 155 188-363 170-344 (854)
200 3cf0_A Transitional endoplasmi 97.6 0.00054 1.9E-08 72.0 14.2 180 188-392 15-222 (301)
201 2zan_A Vacuolar protein sortin 97.6 0.00092 3.1E-08 74.3 16.5 188 188-398 134-345 (444)
202 3co5_A Putative two-component 97.6 4.4E-05 1.5E-09 70.5 4.2 110 189-333 5-115 (143)
203 2gno_A DNA polymerase III, gam 97.6 0.00029 9.9E-09 73.8 10.9 149 192-364 1-152 (305)
204 1in4_A RUVB, holliday junction 97.5 0.0037 1.3E-07 66.6 19.2 175 188-395 25-220 (334)
205 4fcw_A Chaperone protein CLPB; 97.5 0.00044 1.5E-08 73.1 11.1 122 188-318 17-143 (311)
206 3vfd_A Spastin; ATPase, microt 97.5 0.0018 6.1E-08 70.8 16.3 187 188-398 115-326 (389)
207 1io0_A Tropomodulin; LRR prote 97.4 8.7E-05 3E-09 71.8 4.3 84 599-682 63-162 (185)
208 4fs7_A Uncharacterized protein 97.4 0.001 3.6E-08 72.9 13.1 81 779-870 292-374 (394)
209 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0014 4.7E-08 78.6 15.1 154 188-363 186-361 (758)
210 2c9o_A RUVB-like 1; hexameric 97.4 0.00073 2.5E-08 75.5 11.8 97 296-397 297-409 (456)
211 3pxi_A Negative regulator of g 97.3 0.00065 2.2E-08 81.3 11.8 146 188-364 180-338 (758)
212 3hu3_A Transitional endoplasmi 97.3 0.00069 2.4E-08 75.8 10.8 185 188-397 204-414 (489)
213 2kjq_A DNAA-related protein; s 97.3 0.00013 4.5E-09 67.6 3.8 87 215-333 36-124 (149)
214 4b4t_J 26S protease regulatory 97.3 0.0022 7.5E-08 68.8 13.5 179 188-391 148-354 (405)
215 2bjv_A PSP operon transcriptio 97.2 0.00042 1.4E-08 71.4 7.4 47 188-238 6-52 (265)
216 1io0_A Tropomodulin; LRR prote 97.2 0.00011 3.7E-09 71.2 2.6 85 598-682 33-134 (185)
217 3rw6_A Nuclear RNA export fact 97.2 0.00026 9E-09 72.1 4.8 81 621-703 167-259 (267)
218 1lv7_A FTSH; alpha/beta domain 97.1 0.0059 2E-07 62.3 14.8 183 188-395 12-222 (257)
219 1ojl_A Transcriptional regulat 97.1 0.00065 2.2E-08 71.3 7.5 47 188-238 2-48 (304)
220 1ofh_A ATP-dependent HSL prote 97.1 0.0013 4.3E-08 69.5 9.7 51 188-238 15-73 (310)
221 3pxi_A Negative regulator of g 97.1 0.0006 2.1E-08 81.6 8.0 155 188-363 491-674 (758)
222 4b4t_K 26S protease regulatory 97.1 0.0023 7.7E-08 69.8 11.6 51 188-238 172-229 (428)
223 4b4t_L 26S protease subunit RP 97.1 0.0025 8.5E-08 69.6 11.7 179 188-391 181-387 (437)
224 2r62_A Cell division protease 97.1 0.00038 1.3E-08 71.8 4.9 51 188-238 11-67 (268)
225 4b4t_H 26S protease regulatory 96.9 0.006 2E-07 66.4 13.1 179 188-391 209-415 (467)
226 2ce7_A Cell division protein F 96.9 0.0037 1.3E-07 69.4 11.7 179 188-391 16-221 (476)
227 4fs7_A Uncharacterized protein 96.9 0.0034 1.2E-07 68.7 10.9 91 744-852 292-384 (394)
228 4gt6_A Cell surface protein; l 96.8 0.015 5E-07 63.6 15.6 105 744-871 260-366 (394)
229 2qgz_A Helicase loader, putati 96.8 0.00075 2.6E-08 70.9 4.2 56 193-253 133-189 (308)
230 4b4t_M 26S protease regulatory 96.8 0.0018 6.2E-08 70.6 7.2 178 188-390 181-386 (434)
231 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00078 2.7E-08 69.7 4.1 69 215-305 123-193 (331)
232 2r44_A Uncharacterized protein 96.7 0.0027 9.3E-08 67.7 8.5 151 188-365 27-199 (331)
233 3m6a_A ATP-dependent protease 96.7 0.0033 1.1E-07 71.7 9.3 162 188-364 81-266 (543)
234 2cvh_A DNA repair and recombin 96.6 0.0086 2.9E-07 59.3 10.8 85 215-305 20-116 (220)
235 3cf2_A TER ATPase, transitiona 96.6 0.012 4.1E-07 69.2 13.2 179 188-391 204-407 (806)
236 4b4t_I 26S protease regulatory 96.6 0.0078 2.7E-07 64.8 10.4 178 188-390 182-387 (437)
237 1qvr_A CLPB protein; coiled co 96.3 0.0085 2.9E-07 72.5 9.8 136 188-333 558-710 (854)
238 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0048 1.6E-07 73.9 7.5 121 188-319 458-582 (758)
239 4gt6_A Cell surface protein; l 96.1 0.051 1.7E-06 59.3 14.2 239 598-869 84-341 (394)
240 4h09_A Hypothetical leucine ri 96.1 0.16 5.4E-06 54.9 18.0 54 599-655 67-121 (379)
241 3hr8_A Protein RECA; alpha and 96.1 0.017 5.7E-07 61.4 9.6 85 214-305 60-150 (356)
242 2b8t_A Thymidine kinase; deoxy 96.0 0.0039 1.3E-07 61.6 4.1 112 215-334 12-126 (223)
243 1jr3_D DNA polymerase III, del 96.0 0.091 3.1E-06 56.0 15.0 156 215-396 18-183 (343)
244 1xp8_A RECA protein, recombina 95.8 0.029 9.8E-07 60.0 10.2 84 215-305 74-163 (366)
245 1um8_A ATP-dependent CLP prote 95.8 0.036 1.2E-06 60.0 10.9 22 216-237 73-94 (376)
246 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.02 6.9E-07 57.1 8.1 115 215-334 23-168 (235)
247 1ypw_A Transitional endoplasmi 95.7 0.032 1.1E-06 66.7 10.6 157 188-364 204-385 (806)
248 2z43_A DNA repair and recombin 95.6 0.028 9.4E-07 59.4 9.0 55 215-270 107-165 (324)
249 3io5_A Recombination and repai 95.6 0.047 1.6E-06 56.2 10.0 82 217-305 30-122 (333)
250 1rz3_A Hypothetical protein rb 95.6 0.012 4.2E-07 57.4 5.6 43 192-237 2-44 (201)
251 2dhr_A FTSH; AAA+ protein, hex 95.6 0.071 2.4E-06 59.4 12.4 175 188-391 31-236 (499)
252 1v5w_A DMC1, meiotic recombina 95.6 0.043 1.5E-06 58.4 10.2 51 214-264 121-175 (343)
253 1n0w_A DNA repair protein RAD5 95.5 0.02 6.9E-07 57.6 7.3 89 215-304 24-129 (243)
254 2zr9_A Protein RECA, recombina 95.5 0.042 1.4E-06 58.4 9.7 84 215-305 61-150 (349)
255 2px0_A Flagellar biosynthesis 95.4 0.037 1.3E-06 57.5 8.9 87 214-303 104-191 (296)
256 3t15_A Ribulose bisphosphate c 95.3 0.017 5.8E-07 60.1 5.9 25 214-238 35-59 (293)
257 1u94_A RECA protein, recombina 95.2 0.046 1.6E-06 58.2 8.9 84 215-305 63-152 (356)
258 2i1q_A DNA repair and recombin 95.1 0.03 1E-06 59.2 7.2 89 214-303 97-213 (322)
259 2x8a_A Nuclear valosin-contain 95.0 0.083 2.8E-06 54.1 10.0 155 188-364 10-191 (274)
260 1cr0_A DNA primase/helicase; R 95.0 0.058 2E-06 56.2 8.9 38 215-254 35-73 (296)
261 1g5t_A COB(I)alamin adenosyltr 94.8 0.017 5.9E-07 55.2 3.7 113 216-334 29-163 (196)
262 1odf_A YGR205W, hypothetical 3 94.8 0.12 4E-06 53.4 10.2 81 213-293 29-117 (290)
263 4h09_A Hypothetical leucine ri 94.8 0.49 1.7E-05 50.9 15.9 78 599-681 44-123 (379)
264 3c8u_A Fructokinase; YP_612366 94.7 0.022 7.6E-07 55.8 4.6 39 196-238 7-45 (208)
265 2pze_A Cystic fibrosis transme 94.7 0.22 7.6E-06 49.4 11.8 23 216-238 35-57 (229)
266 3rfe_A Platelet glycoprotein I 94.6 0.045 1.5E-06 48.9 5.9 52 604-657 11-65 (130)
267 3tqc_A Pantothenate kinase; bi 94.6 0.083 2.8E-06 55.2 8.5 99 190-294 69-171 (321)
268 3lw7_A Adenylate kinase relate 94.5 0.016 5.6E-07 54.8 2.8 20 216-235 2-21 (179)
269 1zp6_A Hypothetical protein AT 94.5 0.022 7.4E-07 54.9 3.7 24 215-238 9-32 (191)
270 4a1f_A DNAB helicase, replicat 94.4 0.12 4.1E-06 54.3 9.6 52 215-270 46-97 (338)
271 1vma_A Cell division protein F 94.4 0.21 7.1E-06 51.9 11.3 105 197-304 84-196 (306)
272 1qhx_A CPT, protein (chloramph 94.4 0.017 5.9E-07 54.9 2.8 22 216-237 4-25 (178)
273 3bh0_A DNAB-like replicative h 94.4 0.22 7.5E-06 52.2 11.6 51 215-269 68-118 (315)
274 1gvn_B Zeta; postsegregational 94.4 0.036 1.2E-06 57.4 5.3 40 197-237 16-55 (287)
275 3kb2_A SPBC2 prophage-derived 94.4 0.018 6.2E-07 54.3 2.8 22 216-237 2-23 (173)
276 3nbx_X ATPase RAVA; AAA+ ATPas 94.3 0.027 9.1E-07 62.9 4.3 42 189-238 23-64 (500)
277 1ly1_A Polynucleotide kinase; 94.2 0.022 7.4E-07 54.3 3.1 22 216-237 3-24 (181)
278 3ice_A Transcription terminati 94.2 0.082 2.8E-06 55.9 7.4 96 199-303 163-270 (422)
279 3dm5_A SRP54, signal recogniti 94.2 0.31 1.1E-05 53.0 12.4 24 214-237 99-122 (443)
280 3vaa_A Shikimate kinase, SK; s 94.2 0.022 7.5E-07 55.4 3.0 23 215-237 25-47 (199)
281 2p5t_B PEZT; postsegregational 94.1 0.037 1.3E-06 56.1 4.6 41 196-237 14-54 (253)
282 1pzn_A RAD51, DNA repair and r 94.0 0.094 3.2E-06 55.8 7.8 48 214-261 130-181 (349)
283 1kgd_A CASK, peripheral plasma 94.0 0.026 8.7E-07 53.9 3.0 23 215-237 5-27 (180)
284 2orw_A Thymidine kinase; TMTK, 94.0 0.0062 2.1E-07 58.4 -1.4 107 216-333 4-112 (184)
285 3uie_A Adenylyl-sulfate kinase 93.9 0.03 1E-06 54.4 3.5 24 215-238 25-48 (200)
286 1kag_A SKI, shikimate kinase I 93.9 0.022 7.5E-07 53.8 2.3 22 216-237 5-26 (173)
287 2rhm_A Putative kinase; P-loop 93.8 0.033 1.1E-06 53.7 3.5 23 215-237 5-27 (193)
288 3lda_A DNA repair protein RAD5 93.8 0.13 4.5E-06 55.6 8.5 56 215-271 178-237 (400)
289 1sky_E F1-ATPase, F1-ATP synth 93.8 0.24 8.1E-06 54.2 10.5 87 216-303 152-254 (473)
290 3trf_A Shikimate kinase, SK; a 93.8 0.027 9.4E-07 53.9 2.8 23 215-237 5-27 (185)
291 1fx0_B ATP synthase beta chain 93.7 0.21 7.3E-06 54.6 9.9 99 199-303 154-275 (498)
292 2xxa_A Signal recognition part 93.7 0.36 1.2E-05 52.8 11.8 42 197-238 79-123 (433)
293 1nks_A Adenylate kinase; therm 93.7 0.033 1.1E-06 53.7 3.2 22 216-237 2-23 (194)
294 1knq_A Gluconate kinase; ALFA/ 93.7 0.041 1.4E-06 52.1 3.8 23 215-237 8-30 (175)
295 4eun_A Thermoresistant glucoki 93.6 0.034 1.2E-06 54.1 3.1 23 215-237 29-51 (200)
296 3hws_A ATP-dependent CLP prote 93.6 0.049 1.7E-06 58.6 4.6 50 189-238 16-74 (363)
297 3t61_A Gluconokinase; PSI-biol 93.5 0.029 1E-06 54.6 2.6 24 215-238 18-41 (202)
298 4gp7_A Metallophosphoesterase; 93.5 0.035 1.2E-06 52.4 3.0 23 215-237 9-31 (171)
299 3jvv_A Twitching mobility prot 93.5 0.055 1.9E-06 57.6 4.8 112 216-338 124-235 (356)
300 3tau_A Guanylate kinase, GMP k 93.4 0.039 1.3E-06 54.1 3.3 24 215-238 8-31 (208)
301 3tr0_A Guanylate kinase, GMP k 93.4 0.039 1.3E-06 53.7 3.3 22 216-237 8-29 (205)
302 2bdt_A BH3686; alpha-beta prot 93.4 0.04 1.4E-06 53.0 3.2 22 216-237 3-24 (189)
303 2qt1_A Nicotinamide riboside k 93.3 0.048 1.6E-06 53.3 3.8 24 214-237 20-43 (207)
304 1kht_A Adenylate kinase; phosp 93.3 0.036 1.2E-06 53.3 2.8 22 216-237 4-25 (192)
305 3asz_A Uridine kinase; cytidin 93.3 0.047 1.6E-06 53.5 3.6 24 214-237 5-28 (211)
306 2ze6_A Isopentenyl transferase 93.3 0.04 1.4E-06 55.8 3.1 22 216-237 2-23 (253)
307 1uf9_A TT1252 protein; P-loop, 93.2 0.047 1.6E-06 53.0 3.5 24 214-237 7-30 (203)
308 3iij_A Coilin-interacting nucl 93.2 0.036 1.2E-06 52.8 2.6 23 215-237 11-33 (180)
309 1y63_A LMAJ004144AAA protein; 93.2 0.043 1.5E-06 52.5 3.1 23 215-237 10-32 (184)
310 2c95_A Adenylate kinase 1; tra 93.2 0.044 1.5E-06 52.9 3.2 23 215-237 9-31 (196)
311 2ga8_A Hypothetical 39.9 kDa p 93.2 0.075 2.5E-06 55.9 5.0 46 191-238 2-47 (359)
312 1via_A Shikimate kinase; struc 93.1 0.033 1.1E-06 52.8 2.2 22 216-237 5-26 (175)
313 1ukz_A Uridylate kinase; trans 93.1 0.052 1.8E-06 52.8 3.7 24 214-237 14-37 (203)
314 2j41_A Guanylate kinase; GMP, 93.1 0.046 1.6E-06 53.3 3.3 24 215-238 6-29 (207)
315 2qor_A Guanylate kinase; phosp 93.1 0.037 1.3E-06 54.0 2.5 23 215-237 12-34 (204)
316 3umf_A Adenylate kinase; rossm 93.1 0.048 1.6E-06 53.5 3.3 26 213-238 27-52 (217)
317 3kl4_A SRP54, signal recogniti 93.1 0.49 1.7E-05 51.5 11.6 25 214-238 96-120 (433)
318 3a00_A Guanylate kinase, GMP k 93.1 0.035 1.2E-06 53.2 2.3 22 216-237 2-23 (186)
319 1tev_A UMP-CMP kinase; ploop, 93.1 0.046 1.6E-06 52.7 3.1 23 215-237 3-25 (196)
320 1ye8_A Protein THEP1, hypothet 93.1 0.046 1.6E-06 51.9 3.0 22 217-238 2-23 (178)
321 2ffh_A Protein (FFH); SRP54, s 93.0 0.33 1.1E-05 52.7 10.1 24 215-238 98-121 (425)
322 2jaq_A Deoxyguanosine kinase; 93.0 0.043 1.5E-06 53.4 2.9 21 217-237 2-22 (205)
323 1zuh_A Shikimate kinase; alpha 93.0 0.044 1.5E-06 51.5 2.8 23 215-237 7-29 (168)
324 1uj2_A Uridine-cytidine kinase 93.0 0.049 1.7E-06 55.2 3.3 24 214-237 21-44 (252)
325 2if2_A Dephospho-COA kinase; a 93.0 0.046 1.6E-06 53.3 3.0 22 216-237 2-23 (204)
326 1jjv_A Dephospho-COA kinase; P 92.9 0.052 1.8E-06 53.0 3.3 22 216-237 3-24 (206)
327 3a4m_A L-seryl-tRNA(SEC) kinas 92.9 0.051 1.7E-06 55.3 3.3 23 215-237 4-26 (260)
328 1qf9_A UMP/CMP kinase, protein 92.9 0.064 2.2E-06 51.5 3.9 23 215-237 6-28 (194)
329 2yvu_A Probable adenylyl-sulfa 92.9 0.061 2.1E-06 51.5 3.7 25 214-238 12-36 (186)
330 1cke_A CK, MSSA, protein (cyti 92.8 0.047 1.6E-06 54.2 2.9 22 216-237 6-27 (227)
331 2iyv_A Shikimate kinase, SK; t 92.8 0.037 1.3E-06 52.9 2.0 22 216-237 3-24 (184)
332 1lvg_A Guanylate kinase, GMP k 92.8 0.042 1.4E-06 53.3 2.4 22 216-237 5-26 (198)
333 3cm0_A Adenylate kinase; ATP-b 92.8 0.056 1.9E-06 51.7 3.2 23 215-237 4-26 (186)
334 2cdn_A Adenylate kinase; phosp 92.8 0.059 2E-06 52.4 3.4 23 215-237 20-42 (201)
335 3e70_C DPA, signal recognition 92.7 0.35 1.2E-05 50.7 9.5 25 214-238 128-152 (328)
336 2bwj_A Adenylate kinase 5; pho 92.7 0.052 1.8E-06 52.6 2.9 22 216-237 13-34 (199)
337 2plr_A DTMP kinase, probable t 92.7 0.058 2E-06 52.8 3.3 23 216-238 5-27 (213)
338 2bbw_A Adenylate kinase 4, AK4 92.7 0.055 1.9E-06 54.6 3.1 23 215-237 27-49 (246)
339 3l0o_A Transcription terminati 92.7 0.061 2.1E-06 56.8 3.5 53 198-256 163-216 (427)
340 3fwy_A Light-independent proto 92.7 0.059 2E-06 56.3 3.4 39 214-254 47-85 (314)
341 2yhs_A FTSY, cell division pro 92.7 0.33 1.1E-05 53.4 9.4 43 213-258 291-333 (503)
342 1xjc_A MOBB protein homolog; s 92.6 0.056 1.9E-06 50.6 2.8 25 214-238 3-27 (169)
343 2ck3_D ATP synthase subunit be 92.6 0.46 1.6E-05 51.8 10.3 65 199-269 142-207 (482)
344 3e1s_A Exodeoxyribonuclease V, 92.6 0.15 5E-06 58.3 6.9 96 216-331 205-313 (574)
345 3rfe_A Platelet glycoprotein I 92.6 0.11 3.8E-06 46.3 4.7 53 627-682 11-66 (130)
346 1e6c_A Shikimate kinase; phosp 92.6 0.045 1.5E-06 51.6 2.2 22 216-237 3-24 (173)
347 3ney_A 55 kDa erythrocyte memb 92.5 0.061 2.1E-06 51.7 3.1 24 214-237 18-41 (197)
348 1ls1_A Signal recognition part 92.4 0.36 1.2E-05 49.9 9.0 24 215-238 98-121 (295)
349 3aez_A Pantothenate kinase; tr 92.4 0.069 2.4E-06 55.8 3.6 24 214-237 89-112 (312)
350 2vli_A Antibiotic resistance p 92.4 0.042 1.4E-06 52.4 1.8 23 215-237 5-27 (183)
351 2j37_W Signal recognition part 92.4 0.71 2.4E-05 51.3 11.8 42 197-238 80-124 (504)
352 1nn5_A Similar to deoxythymidy 92.4 0.11 3.7E-06 51.0 4.8 24 215-238 9-32 (215)
353 2jeo_A Uridine-cytidine kinase 92.3 0.074 2.5E-06 53.6 3.6 23 215-237 25-47 (245)
354 1znw_A Guanylate kinase, GMP k 92.3 0.067 2.3E-06 52.3 3.2 23 215-237 20-42 (207)
355 3upu_A ATP-dependent DNA helic 92.3 0.2 6.8E-06 55.7 7.4 23 216-238 46-68 (459)
356 2pt5_A Shikimate kinase, SK; a 92.3 0.062 2.1E-06 50.4 2.8 21 217-237 2-22 (168)
357 2hf9_A Probable hydrogenase ni 92.3 0.1 3.5E-06 51.6 4.6 25 214-238 37-61 (226)
358 1j8m_F SRP54, signal recogniti 92.3 0.31 1.1E-05 50.4 8.3 90 215-306 98-192 (297)
359 2z0h_A DTMP kinase, thymidylat 92.2 0.19 6.3E-06 48.4 6.2 22 217-238 2-23 (197)
360 2wwf_A Thymidilate kinase, put 92.2 0.069 2.4E-06 52.3 3.1 24 215-238 10-33 (212)
361 1aky_A Adenylate kinase; ATP:A 92.2 0.067 2.3E-06 52.9 3.0 23 215-237 4-26 (220)
362 2r6a_A DNAB helicase, replicat 92.2 0.4 1.4E-05 53.1 9.6 50 215-267 203-252 (454)
363 1htw_A HI0065; nucleotide-bind 92.2 0.085 2.9E-06 48.9 3.5 23 215-237 33-55 (158)
364 2pbr_A DTMP kinase, thymidylat 92.2 0.065 2.2E-06 51.6 2.9 21 217-237 2-22 (195)
365 2grj_A Dephospho-COA kinase; T 92.2 0.072 2.5E-06 51.2 3.1 24 214-237 11-34 (192)
366 1ex7_A Guanylate kinase; subst 92.2 0.055 1.9E-06 51.6 2.2 22 216-237 2-23 (186)
367 2pez_A Bifunctional 3'-phospho 92.1 0.078 2.7E-06 50.4 3.3 23 215-237 5-27 (179)
368 4a74_A DNA repair and recombin 92.1 0.2 6.8E-06 49.6 6.5 44 215-258 25-72 (231)
369 1z6g_A Guanylate kinase; struc 92.1 0.062 2.1E-06 53.0 2.6 23 215-237 23-45 (218)
370 4e22_A Cytidylate kinase; P-lo 92.1 0.075 2.6E-06 53.8 3.2 23 215-237 27-49 (252)
371 1gtv_A TMK, thymidylate kinase 92.0 0.046 1.6E-06 53.6 1.6 22 217-238 2-23 (214)
372 1zd8_A GTP:AMP phosphotransfer 92.0 0.071 2.4E-06 53.0 3.0 23 215-237 7-29 (227)
373 1g8p_A Magnesium-chelatase 38 92.0 0.059 2E-06 57.5 2.6 45 188-238 24-68 (350)
374 1rj9_A FTSY, signal recognitio 92.0 0.08 2.7E-06 55.1 3.4 25 214-238 101-125 (304)
375 2f6r_A COA synthase, bifunctio 91.9 0.093 3.2E-06 54.0 3.8 23 214-236 74-96 (281)
376 1zu4_A FTSY; GTPase, signal re 91.9 0.37 1.3E-05 50.4 8.5 25 214-238 104-128 (320)
377 1s96_A Guanylate kinase, GMP k 91.9 0.08 2.7E-06 52.2 3.1 23 215-237 16-38 (219)
378 3tlx_A Adenylate kinase 2; str 91.8 0.11 3.6E-06 52.3 4.0 23 215-237 29-51 (243)
379 2pt7_A CAG-ALFA; ATPase, prote 91.8 0.17 5.7E-06 53.4 5.6 106 216-336 172-277 (330)
380 1zak_A Adenylate kinase; ATP:A 91.8 0.073 2.5E-06 52.6 2.7 23 215-237 5-27 (222)
381 2f1r_A Molybdopterin-guanine d 91.7 0.068 2.3E-06 50.3 2.3 23 216-238 3-25 (171)
382 2v54_A DTMP kinase, thymidylat 91.7 0.086 2.9E-06 51.2 3.2 23 216-238 5-27 (204)
383 1tue_A Replication protein E1; 91.6 0.12 4.2E-06 49.6 3.9 37 197-238 45-81 (212)
384 3fb4_A Adenylate kinase; psych 91.6 0.083 2.8E-06 51.9 2.9 21 217-237 2-22 (216)
385 1m7g_A Adenylylsulfate kinase; 91.6 0.097 3.3E-06 51.3 3.3 24 215-238 25-48 (211)
386 2ewv_A Twitching motility prot 91.5 0.093 3.2E-06 56.4 3.4 111 215-337 136-247 (372)
387 2wsm_A Hydrogenase expression/ 91.5 0.11 3.7E-06 51.2 3.7 40 193-238 14-53 (221)
388 1q57_A DNA primase/helicase; d 91.5 0.76 2.6E-05 51.6 11.0 53 215-270 242-294 (503)
389 1sq5_A Pantothenate kinase; P- 91.4 0.2 6.8E-06 52.3 5.8 24 214-237 79-102 (308)
390 3cf2_A TER ATPase, transitiona 91.4 0.32 1.1E-05 57.2 7.9 98 188-305 477-581 (806)
391 2q6t_A DNAB replication FORK h 91.4 0.55 1.9E-05 51.8 9.6 53 215-270 200-252 (444)
392 3dl0_A Adenylate kinase; phosp 91.4 0.09 3.1E-06 51.7 2.9 21 217-237 2-22 (216)
393 2ged_A SR-beta, signal recogni 91.3 0.14 4.9E-06 49.0 4.2 25 214-238 47-71 (193)
394 3cmu_A Protein RECA, recombina 91.2 0.32 1.1E-05 62.5 8.3 84 214-304 1426-1515(2050)
395 1vht_A Dephospho-COA kinase; s 91.2 0.12 4E-06 50.9 3.6 23 215-237 4-26 (218)
396 2i3b_A HCR-ntpase, human cance 91.2 0.087 3E-06 50.5 2.4 23 217-239 3-25 (189)
397 2ehv_A Hypothetical protein PH 91.1 0.097 3.3E-06 52.7 3.0 23 215-237 30-52 (251)
398 1ixz_A ATP-dependent metallopr 91.1 0.089 3.1E-06 53.2 2.6 21 218-238 52-72 (254)
399 3nwj_A ATSK2; P loop, shikimat 91.1 0.08 2.7E-06 53.3 2.2 22 216-237 49-70 (250)
400 2onk_A Molybdate/tungstate ABC 91.1 0.11 3.6E-06 52.1 3.1 22 216-237 25-46 (240)
401 1g41_A Heat shock protein HSLU 91.1 0.18 6.1E-06 55.0 5.0 50 188-237 15-72 (444)
402 2pcj_A ABC transporter, lipopr 91.0 0.11 3.7E-06 51.4 3.1 22 216-237 31-52 (224)
403 1pgv_A TMD-1, tropomodulin TMD 91.0 0.18 6.3E-06 48.3 4.5 83 599-681 39-136 (197)
404 3be4_A Adenylate kinase; malar 91.0 0.094 3.2E-06 51.6 2.6 22 216-237 6-27 (217)
405 3bgw_A DNAB-like replicative h 90.9 1 3.5E-05 49.4 11.1 51 215-269 197-247 (444)
406 3lnc_A Guanylate kinase, GMP k 90.9 0.075 2.6E-06 52.9 1.8 23 215-237 27-50 (231)
407 3b9q_A Chloroplast SRP recepto 90.9 0.12 4.2E-06 53.6 3.4 25 214-238 99-123 (302)
408 3tif_A Uncharacterized ABC tra 90.8 0.12 4.1E-06 51.5 3.2 22 216-237 32-53 (235)
409 3sr0_A Adenylate kinase; phosp 90.8 0.11 3.8E-06 50.5 2.9 22 217-238 2-23 (206)
410 3d3q_A TRNA delta(2)-isopenten 90.7 0.12 4.1E-06 54.2 3.1 22 216-237 8-29 (340)
411 2og2_A Putative signal recogni 90.7 0.26 8.9E-06 52.3 5.8 25 214-238 156-180 (359)
412 3a8t_A Adenylate isopentenyltr 90.6 0.14 4.9E-06 53.4 3.6 23 215-237 40-62 (339)
413 3r20_A Cytidylate kinase; stru 90.6 0.12 4.2E-06 51.1 3.0 23 215-237 9-31 (233)
414 3vr4_D V-type sodium ATPase su 90.6 0.21 7.3E-06 54.0 5.1 98 199-303 140-257 (465)
415 3ake_A Cytidylate kinase; CMP 90.6 0.12 4E-06 50.4 2.9 21 217-237 4-24 (208)
416 1np6_A Molybdopterin-guanine d 90.6 0.13 4.4E-06 48.5 3.0 24 215-238 6-29 (174)
417 2dr3_A UPF0273 protein PH0284; 90.6 0.22 7.6E-06 49.9 5.0 39 215-255 23-61 (247)
418 1e4v_A Adenylate kinase; trans 90.5 0.13 4.3E-06 50.6 3.0 21 217-237 2-22 (214)
419 3p32_A Probable GTPase RV1496/ 90.5 0.23 7.9E-06 53.0 5.2 37 197-237 65-101 (355)
420 3b85_A Phosphate starvation-in 90.4 0.1 3.5E-06 50.9 2.2 23 216-238 23-45 (208)
421 2cbz_A Multidrug resistance-as 90.4 0.14 4.7E-06 51.2 3.2 23 216-238 32-54 (237)
422 1oix_A RAS-related protein RAB 90.4 0.13 4.5E-06 49.3 3.0 24 215-238 29-52 (191)
423 3gfo_A Cobalt import ATP-bindi 90.4 0.13 4.3E-06 52.6 3.0 22 216-237 35-56 (275)
424 3k1j_A LON protease, ATP-depen 90.4 0.15 5.1E-06 58.8 3.9 42 188-237 41-82 (604)
425 2xb4_A Adenylate kinase; ATP-b 90.3 0.13 4.4E-06 50.9 2.9 21 217-237 2-22 (223)
426 2wji_A Ferrous iron transport 90.3 0.16 5.6E-06 47.2 3.5 23 216-238 4-26 (165)
427 1b0u_A Histidine permease; ABC 90.2 0.14 4.9E-06 51.9 3.2 23 215-237 32-54 (262)
428 2zej_A Dardarin, leucine-rich 90.2 0.13 4.4E-06 49.0 2.7 22 217-238 4-25 (184)
429 1ak2_A Adenylate kinase isoenz 90.2 0.14 4.9E-06 50.9 3.2 24 215-238 16-39 (233)
430 1iy2_A ATP-dependent metallopr 90.2 0.12 4.2E-06 53.1 2.6 51 188-238 40-96 (278)
431 2eyu_A Twitching motility prot 90.1 0.25 8.5E-06 50.1 4.9 111 215-338 25-137 (261)
432 3crm_A TRNA delta(2)-isopenten 90.1 0.14 4.8E-06 53.3 3.1 22 216-237 6-27 (323)
433 1ji0_A ABC transporter; ATP bi 90.1 0.14 4.9E-06 51.2 3.0 22 216-237 33-54 (240)
434 2olj_A Amino acid ABC transpor 90.0 0.15 5.2E-06 51.7 3.2 23 215-237 50-72 (263)
435 1sgw_A Putative ABC transporte 90.0 0.12 4.2E-06 50.6 2.4 22 216-237 36-57 (214)
436 1mv5_A LMRA, multidrug resista 90.0 0.17 5.7E-06 50.8 3.5 23 215-237 28-50 (243)
437 3mfy_A V-type ATP synthase alp 90.0 0.59 2E-05 51.7 7.9 59 199-266 216-275 (588)
438 4g1u_C Hemin import ATP-bindin 90.0 0.14 4.9E-06 52.0 2.9 22 216-237 38-59 (266)
439 2vp4_A Deoxynucleoside kinase; 90.0 0.17 5.7E-06 50.3 3.4 24 214-237 19-42 (230)
440 1yrb_A ATP(GTP)binding protein 90.0 0.17 5.6E-06 51.4 3.4 26 213-238 12-37 (262)
441 3exa_A TRNA delta(2)-isopenten 89.9 0.16 5.5E-06 52.3 3.3 23 215-237 3-25 (322)
442 4eaq_A DTMP kinase, thymidylat 89.9 0.3 1E-05 48.4 5.2 24 215-238 26-49 (229)
443 1g6h_A High-affinity branched- 89.9 0.15 5E-06 51.7 3.0 22 216-237 34-55 (257)
444 3hjn_A DTMP kinase, thymidylat 89.9 0.45 1.5E-05 45.8 6.3 22 217-238 2-23 (197)
445 3llm_A ATP-dependent RNA helic 89.9 0.72 2.5E-05 45.8 8.0 33 197-237 66-98 (235)
446 1ltq_A Polynucleotide kinase; 89.9 0.15 5.1E-06 53.1 3.1 22 216-237 3-24 (301)
447 2d2e_A SUFC protein; ABC-ATPas 89.8 0.16 5.3E-06 51.3 3.0 22 216-237 30-51 (250)
448 2ff7_A Alpha-hemolysin translo 89.8 0.15 5.2E-06 51.2 3.0 22 216-237 36-57 (247)
449 3zvl_A Bifunctional polynucleo 89.8 0.16 5.6E-06 55.5 3.4 25 214-238 257-281 (416)
450 2dyk_A GTP-binding protein; GT 89.7 0.18 6E-06 46.5 3.2 23 216-238 2-24 (161)
451 3vkw_A Replicase large subunit 89.7 0.8 2.7E-05 49.7 8.6 105 212-332 158-268 (446)
452 1vpl_A ABC transporter, ATP-bi 89.7 0.17 5.8E-06 51.1 3.2 22 216-237 42-63 (256)
453 2r9v_A ATP synthase subunit al 89.7 0.43 1.5E-05 52.3 6.5 96 199-303 164-276 (515)
454 3foz_A TRNA delta(2)-isopenten 89.6 0.19 6.6E-06 51.6 3.6 24 214-237 9-32 (316)
455 3b5x_A Lipid A export ATP-bind 89.6 1.1 3.8E-05 51.3 10.4 23 215-237 369-391 (582)
456 1a7j_A Phosphoribulokinase; tr 89.6 0.093 3.2E-06 54.2 1.2 23 215-237 5-27 (290)
457 2v9p_A Replication protein E1; 89.5 0.17 5.8E-06 52.3 3.1 23 215-237 126-148 (305)
458 2ghi_A Transport protein; mult 89.5 0.18 6E-06 51.2 3.2 22 216-237 47-68 (260)
459 2zu0_C Probable ATP-dependent 89.5 0.18 6.2E-06 51.3 3.3 22 216-237 47-68 (267)
460 2ixe_A Antigen peptide transpo 89.5 0.18 6.1E-06 51.5 3.2 23 215-237 45-67 (271)
461 2qi9_C Vitamin B12 import ATP- 89.5 0.17 5.8E-06 50.9 3.0 22 216-237 27-48 (249)
462 2qe7_A ATP synthase subunit al 89.4 0.41 1.4E-05 52.5 6.1 96 199-303 151-263 (502)
463 2f9l_A RAB11B, member RAS onco 89.4 0.17 5.8E-06 48.9 2.8 24 215-238 5-28 (199)
464 2qmh_A HPR kinase/phosphorylas 89.4 0.19 6.6E-06 47.9 3.1 22 216-237 35-56 (205)
465 2nq2_C Hypothetical ABC transp 89.3 0.18 6E-06 50.9 3.0 22 216-237 32-53 (253)
466 2v3c_C SRP54, signal recogniti 89.2 0.22 7.6E-06 54.4 3.9 42 197-238 78-122 (432)
467 1q3t_A Cytidylate kinase; nucl 89.2 0.2 6.8E-06 50.0 3.3 25 213-237 14-38 (236)
468 2ihy_A ABC transporter, ATP-bi 89.2 0.18 6.1E-06 51.7 3.0 22 216-237 48-69 (279)
469 2yz2_A Putative ABC transporte 89.2 0.19 6.6E-06 51.1 3.2 22 216-237 34-55 (266)
470 1nlf_A Regulatory protein REPA 89.1 0.18 6.1E-06 51.8 3.0 22 216-237 31-52 (279)
471 2wjg_A FEOB, ferrous iron tran 89.1 0.22 7.7E-06 47.3 3.5 24 215-238 7-30 (188)
472 4edh_A DTMP kinase, thymidylat 89.1 0.64 2.2E-05 45.3 6.8 24 215-238 6-29 (213)
473 1pgv_A TMD-1, tropomodulin TMD 89.1 0.25 8.6E-06 47.3 3.7 86 597-682 66-168 (197)
474 2ce2_X GTPase HRAS; signaling 89.0 0.19 6.6E-06 46.3 2.8 22 217-238 5-26 (166)
475 3gqb_B V-type ATP synthase bet 88.9 0.27 9.1E-06 53.3 4.1 100 199-303 136-260 (464)
476 3cmw_A Protein RECA, recombina 88.9 0.65 2.2E-05 59.0 8.1 81 216-303 384-470 (1706)
477 3cmu_A Protein RECA, recombina 88.9 0.69 2.4E-05 59.6 8.5 85 215-306 383-473 (2050)
478 3vr4_A V-type sodium ATPase ca 88.8 0.8 2.7E-05 50.9 7.9 49 199-256 221-269 (600)
479 3sop_A Neuronal-specific septi 88.8 0.21 7.3E-06 50.9 3.2 22 217-238 4-25 (270)
480 2gj8_A MNME, tRNA modification 88.6 0.22 7.5E-06 46.8 3.0 23 216-238 5-27 (172)
481 3nh6_A ATP-binding cassette SU 88.5 0.21 7.1E-06 51.8 2.9 23 215-237 80-102 (306)
482 1svm_A Large T antigen; AAA+ f 88.5 0.23 7.7E-06 53.2 3.3 23 215-237 169-191 (377)
483 3end_A Light-independent proto 88.5 0.51 1.8E-05 49.1 6.0 41 214-256 40-80 (307)
484 2lkc_A Translation initiation 88.4 0.28 9.5E-06 46.0 3.6 25 214-238 7-31 (178)
485 3q72_A GTP-binding protein RAD 88.4 0.22 7.5E-06 46.1 2.8 22 217-238 4-25 (166)
486 1svi_A GTP-binding protein YSX 88.3 0.3 1E-05 46.7 3.8 25 214-238 22-46 (195)
487 2nzj_A GTP-binding protein REM 88.2 0.3 1E-05 45.6 3.7 24 215-238 4-27 (175)
488 2ocp_A DGK, deoxyguanosine kin 88.2 0.26 9E-06 49.3 3.4 24 215-238 2-25 (241)
489 2pjz_A Hypothetical protein ST 88.2 0.23 7.9E-06 50.3 3.0 22 216-237 31-52 (263)
490 3ld9_A DTMP kinase, thymidylat 88.2 0.7 2.4E-05 45.3 6.3 26 214-239 20-45 (223)
491 1z2a_A RAS-related protein RAB 88.2 0.27 9.3E-06 45.5 3.3 24 215-238 5-28 (168)
492 2ck3_A ATP synthase subunit al 88.2 0.64 2.2E-05 51.1 6.5 100 199-303 151-271 (510)
493 3q85_A GTP-binding protein REM 88.0 0.24 8.4E-06 46.0 2.9 22 216-237 3-24 (169)
494 2aka_B Dynamin-1; fusion prote 88.0 0.53 1.8E-05 48.7 5.7 42 197-238 8-49 (299)
495 3con_A GTPase NRAS; structural 87.9 0.23 7.8E-06 47.4 2.7 23 216-238 22-44 (190)
496 2erx_A GTP-binding protein DI- 87.9 0.25 8.5E-06 46.0 2.8 23 216-238 4-26 (172)
497 2bbs_A Cystic fibrosis transme 87.9 0.28 9.4E-06 50.5 3.3 23 215-237 64-86 (290)
498 3pqc_A Probable GTP-binding pr 87.8 0.33 1.1E-05 46.3 3.8 24 215-238 23-46 (195)
499 1fzq_A ADP-ribosylation factor 87.8 0.33 1.1E-05 46.0 3.7 24 215-238 16-39 (181)
500 1m7b_A RND3/RHOE small GTP-bin 87.8 0.25 8.7E-06 46.8 2.8 24 215-238 7-30 (184)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-48 Score=452.34 Aligned_cols=311 Identities=19% Similarity=0.240 Sum_probs=255.3
Q ss_pred ecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhc--chhhhccCCeEEEEEeCCCC--CHHHHHHHH
Q 047584 191 YGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN--DKRVQDHFDLKAWTCVSEDF--DVKGLTRTI 266 (883)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i 266 (883)
|||+.++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ ++..++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 23579999999999999999999998 67899999999999999985 899999999
Q ss_pred HHHhccCCC-------CCCChHHHHHHHHHHhCCC-cEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHHH
Q 047584 267 LSSITKQTV-------DNNDLNFLQEELKKQLSRK-KFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAK 338 (883)
Q Consensus 267 l~~l~~~~~-------~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 338 (883)
+.+++.... +..+.+.+...+++.|+++ ||||||||||+.+...|... +||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHHH
Confidence 999976521 1234566789999999996 99999999998633334321 7999999999999998
Q ss_pred hcCC-CccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCCChHHHHHHHhcc
Q 047584 339 IMSL-DQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREWKGVLSSK 417 (883)
Q Consensus 339 ~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~~ 417 (883)
.++. ..+|++++|+.++||+||.+++|+.. .++.+++++.+|+++|+|+||||+++|+.|+.+. .+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~--w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT--FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS--HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccch--HHHHHHhHHH
Confidence 8763 36799999999999999999988653 2467889999999999999999999999998762 3444444444
Q ss_pred cccCCCCCCCchhHHHHhhcCCChhHHHHhh-----------HhccCCCCceeCHHHHHHHHHhC--CCCcCCCCCCChH
Q 047584 418 IWELPEDRCPIIPALAVSYYYLPPILKQCFA-----------YCSLFPKDYEFDEEEIILLWCAS--GFLDHKESGNPNE 484 (883)
Q Consensus 418 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~li~~Wiae--g~i~~~~~~~~~e 484 (883)
.+... ...+.+++.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.....+.+.+
T Consensus 355 l~~~~--~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESRG--LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHHC--SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhccc--HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 33322 346889999999999999999999 999999999999 8999999 9998764467788
Q ss_pred HHHHHHHHHHHhcCcccccCC-CCCcEEecchHHHHHHHHh
Q 047584 485 DLGRKFFQELRSRSFFQQSAT-DASRFVMHDLINDLARWAA 524 (883)
Q Consensus 485 ~~~~~~l~~L~~~sllq~~~~-~~~~~~~Hdlv~~~a~~~~ 524 (883)
++++ ||++|+++||++.... ...+|+|||+||++|+.++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~ 468 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVV 468 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTS
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHH
Confidence 8888 9999999999998653 3568999999999999888
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.4e-39 Score=378.46 Aligned_cols=286 Identities=19% Similarity=0.244 Sum_probs=230.5
Q ss_pred ceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCe-EEEEEeCCCCCHHHHHHHHH
Q 047584 189 KVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDL-KAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~il 267 (883)
..|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45999999999999997532 2689999999999999999999998789999986 99999999999888888887
Q ss_pred HHhccCC---C---C-----CCChHHHHHHHHHHh---CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC
Q 047584 268 SSITKQT---V---D-----NNDLNFLQEELKKQL---SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN 333 (883)
Q Consensus 268 ~~l~~~~---~---~-----~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 333 (883)
..+.... . + ..+.+.+...+++.| .+||+||||||||+. +.|..+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 7543211 1 1 012345666777766 789999999999984 666654 2 68999999999
Q ss_pred hhHHHhcCCCccEeCC------CCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCC-C
Q 047584 334 EEVAKIMSLDQAYELK------SLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKP-Y 406 (883)
Q Consensus 334 ~~va~~~~~~~~~~l~------~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~-~ 406 (883)
+.++..+.....+.++ +|+.+|||+||.++. +.. . .++..+| |+|+||||+++|+.|+.++ .
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9998654333356666 999999999999883 321 1 2233344 9999999999999999885 4
Q ss_pred hHHHHHHHhcccccCCCCCCCchhHHHHhhcCCChhH-HHHhhHhccCCCCceeCHHHHHHHHHhCCCCcCCCCCCChHH
Q 047584 407 KREWKGVLSSKIWELPEDRCPIIPALAVSYYYLPPIL-KQCFAYCSLFPKDYEFDEEEIILLWCASGFLDHKESGNPNED 485 (883)
Q Consensus 407 ~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~ 485 (883)
...|... ....+..+|.+||+.||+++ |+||+|||+||+++.|+++.++.+|+++| ++
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------ee 402 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KS 402 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HH
Confidence 6788753 13469999999999999999 99999999999999999999999998876 23
Q ss_pred HHHHHHHHHHhcCcccccCCCCCcEEecchHHHHHH
Q 047584 486 LGRKFFQELRSRSFFQQSATDASRFVMHDLINDLAR 521 (883)
Q Consensus 486 ~~~~~l~~L~~~sllq~~~~~~~~~~~Hdlv~~~a~ 521 (883)
.++.+|++|+++||++... ...+|+|||++++++.
T Consensus 403 dAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHhc
Confidence 5889999999999999852 3568999999999664
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.8e-38 Score=404.16 Aligned_cols=306 Identities=22% Similarity=0.318 Sum_probs=245.4
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhh-hccC-CeEEEEEeCCCCC--HHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRV-QDHF-DLKAWTCVSEDFD--VKGLT 263 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~--~~~~~ 263 (883)
..||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....+
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 679999999999999997543 35799999999999999999999997644 4555 5788999998543 34446
Q ss_pred HHHHHHhccCC----CCCCChHHHHHHHHHHhCCC--cEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHH
Q 047584 264 RTILSSITKQT----VDNNDLNFLQEELKKQLSRK--KFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVA 337 (883)
Q Consensus 264 ~~il~~l~~~~----~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va 337 (883)
..++..+.... ....+.+.+...++..+.++ ||||||||||+. +.|..+ .+||+||||||++.++
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHHHH
Confidence 66777765432 22456788899999999887 999999999975 455443 5789999999999998
Q ss_pred Hh-cCCCccEeCCC-CCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCCChHHHHHHHh
Q 047584 338 KI-MSLDQAYELKS-LSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREWKGVLS 415 (883)
Q Consensus 338 ~~-~~~~~~~~l~~-L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~ 415 (883)
.. .+....+.+.+ |+++++++||...++.. .+.+++++++|+++|+|+||||+++|++|+.++ ..|...+.
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~ 343 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLR 343 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHH
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHH
Confidence 54 44557899996 99999999999988532 233456799999999999999999999999876 35666655
Q ss_pred cccccC----CC----CCCCchhHHHHhhcCCChhHHHHhhHhccCCCCceeCHHHHHHHHHhCCCCcCCCCCCChHHHH
Q 047584 416 SKIWEL----PE----DRCPIIPALAVSYYYLPPILKQCFAYCSLFPKDYEFDEEEIILLWCASGFLDHKESGNPNEDLG 487 (883)
Q Consensus 416 ~~~~~~----~~----~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~ 487 (883)
...... .. ....+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.+
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~ 411 (1249)
T 3sfz_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEV 411 (1249)
T ss_dssp HHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHH
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHH
Confidence 432221 11 113588999999999999999999999999999999999999999543 4678
Q ss_pred HHHHHHHHhcCcccccCC-CCCcEEecchHHHHHHHHhc
Q 047584 488 RKFFQELRSRSFFQQSAT-DASRFVMHDLINDLARWAAG 525 (883)
Q Consensus 488 ~~~l~~L~~~sllq~~~~-~~~~~~~Hdlv~~~a~~~~~ 525 (883)
+.++++|+++||++.... ...+|+||++||++|+..+.
T Consensus 412 ~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~ 450 (1249)
T 3sfz_A 412 EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNR 450 (1249)
T ss_dssp HHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhh
Confidence 999999999999997653 23469999999999998873
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=344.58 Aligned_cols=303 Identities=24% Similarity=0.355 Sum_probs=234.4
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhh-hccC-CeEEEEEeCCCCCHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRV-QDHF-DLKAWTCVSEDFDVKGLTRT 265 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~~ 265 (883)
..||||+.++++|.++|.... +..++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +...++..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 569999999999999997532 24689999999999999999999998666 7889 58999999875 34444444
Q ss_pred H---HHHhccC----CCCCCChHHHHHHHHHHhCC--CcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhH
Q 047584 266 I---LSSITKQ----TVDNNDLNFLQEELKKQLSR--KKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEV 336 (883)
Q Consensus 266 i---l~~l~~~----~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v 336 (883)
+ +..+... .....+.+.+...++..+.+ +++||||||+|+. ..+.. + .+|++||||||+..+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~~----l---~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLKA----F---DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHHT----T---CSSCEEEEEESCGGG
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHHH----h---cCCCeEEEECCCcHH
Confidence 4 3344321 12345677788888888866 7999999999874 33332 2 468999999999988
Q ss_pred HHhcCCCccEeC---CCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCCCChHHHHHH
Q 047584 337 AKIMSLDQAYEL---KSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREWKGV 413 (883)
Q Consensus 337 a~~~~~~~~~~l---~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~ 413 (883)
+..+. ...+.+ ++|+.+++++||...++.. .....+.+.+|+++|+|+||||..+|+.++..+ ..|...
T Consensus 270 ~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~ 341 (591)
T 1z6t_A 270 TDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYY 341 (591)
T ss_dssp GTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHH
T ss_pred HHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHH
Confidence 77543 233443 6899999999999988642 122345789999999999999999999998875 357766
Q ss_pred HhcccccC--------CCCCCCchhHHHHhhcCCChhHHHHhhHhccCCCCceeCHHHHHHHHHhCCCCcCCCCCCChHH
Q 047584 414 LSSKIWEL--------PEDRCPIIPALAVSYYYLPPILKQCFAYCSLFPKDYEFDEEEIILLWCASGFLDHKESGNPNED 485 (883)
Q Consensus 414 ~~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~ 485 (883)
+....... ......+..++..||+.||++.|.||++||+||+++.|+.+.++..|.++ .+
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~ 409 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TE 409 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HH
Confidence 65432211 11223688899999999999999999999999999999999999999432 34
Q ss_pred HHHHHHHHHHhcCcccccC-CCCCcEEecchHHHHHHHHh
Q 047584 486 LGRKFFQELRSRSFFQQSA-TDASRFVMHDLINDLARWAA 524 (883)
Q Consensus 486 ~~~~~l~~L~~~sllq~~~-~~~~~~~~Hdlv~~~a~~~~ 524 (883)
.++.++++|+++||++... +...+|+||++++++++...
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 5788999999999998654 23347999999999999874
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.3e-21 Score=208.39 Aligned_cols=230 Identities=20% Similarity=0.325 Sum_probs=181.4
Q ss_pred CCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceec
Q 047584 599 KLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKN 678 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l 678 (883)
...++++|+|++|.+..+|..++++++|++|+|++|.++.+|..++++++|++|++++| .+..+|..+.++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 46789999999999999999999999999999999999999999999999999999995 56689999999999999999
Q ss_pred CCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEe
Q 047584 679 SNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNW 758 (883)
Q Consensus 679 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 758 (883)
++|.....+|..++... ....+.++++|+ .|.+.+..-. .++..+..+++|+.|++++
T Consensus 158 ~~n~~~~~~p~~~~~~~----------------~~~~~~~l~~L~-~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 158 RACPELTELPEPLASTD----------------ASGEHQGLVNLQ-SLRLEWTGIR-----SLPASIANLQNLKSLKIRN 215 (328)
T ss_dssp EEETTCCCCCSCSEEEC-----------------CCCEEESTTCC-EEEEEEECCC-----CCCGGGGGCTTCCEEEEES
T ss_pred CCCCCccccChhHhhcc----------------chhhhccCCCCC-EEECcCCCcC-----cchHhhcCCCCCCEEEccC
Confidence 99877788887665411 012234455555 5555443211 2344577788999999988
Q ss_pred ccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCC-CCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccc
Q 047584 759 TCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGM-KFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKH 836 (883)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~ 836 (883)
|.... ....+..+++|+.|++++|... .+|.++.. +++|+.|+|++|...+.+| .++.+++|++
T Consensus 216 N~l~~------------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~--l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 216 SPLSA------------LGPAIHHLPKLEELDLRGCTALRNYPPIFGG--RAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp SCCCC------------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC--CCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred CCCCc------------CchhhccCCCCCEEECcCCcchhhhHHHhcC--CCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 63321 2223556789999999987654 57877764 8999999999998888888 7889999999
Q ss_pred eeccCcccceecCCCccCCCCCCCCCCcceeeccc
Q 047584 837 LVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFED 871 (883)
Q Consensus 837 L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~ 871 (883)
|+|++|+.++.+|..+.. +++|+.+.+..
T Consensus 282 L~L~~n~~~~~iP~~l~~------L~~L~~l~l~~ 310 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQ------LPANCIILVPP 310 (328)
T ss_dssp EECTTCTTCCCCCGGGGG------SCTTCEEECCG
T ss_pred EeCCCCCchhhccHHHhh------ccCceEEeCCH
Confidence 999999999999987665 88888887763
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=2.9e-20 Score=203.29 Aligned_cols=139 Identities=19% Similarity=0.242 Sum_probs=79.4
Q ss_pred CCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCCc
Q 047584 546 RNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRY 625 (883)
Q Consensus 546 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~ 625 (883)
..++++.+..+... .++.+..+++|+.|.+.++. +. .. +.+.++++|++|++++|.+..+| .+..+++
T Consensus 44 ~~L~~L~l~~~~i~---~~~~~~~~~~L~~L~l~~n~------i~-~~-~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 44 ESITKLVVAGEKVA---SIQGIEYLTNLEYLNLNGNQ------IT-DI-SPLSNLVKLTNLYIGTNKITDIS-ALQNLTN 111 (347)
T ss_dssp TTCSEEECCSSCCC---CCTTGGGCTTCCEEECCSSC------CC-CC-GGGTTCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred ccccEEEEeCCccc---cchhhhhcCCccEEEccCCc------cc-cc-hhhhcCCcCCEEEccCCcccCch-HHcCCCc
Confidence 34555555543332 23345556666666654432 11 11 12456667777777777666654 4666777
Q ss_pred ccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCcc
Q 047584 626 LRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTL 700 (883)
Q Consensus 626 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 700 (883)
|++|++++|.++.+|. +..+++|++|++++|..+..++. +..+++|++|++++|. +..++. ++.+++|++|
T Consensus 112 L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L 182 (347)
T 4fmz_A 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSL 182 (347)
T ss_dssp CSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEE
T ss_pred CCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEE
Confidence 7777777777666655 66666777777766544444433 6666666666666665 444443 4555555554
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=7.7e-20 Score=199.98 Aligned_cols=279 Identities=17% Similarity=0.232 Sum_probs=210.3
Q ss_pred CCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCC
Q 047584 545 SRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLR 624 (883)
Q Consensus 545 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~ 624 (883)
...+++|.+..+.... ++.+..+++|++|.+..+. +. .++.+.++++|++|++++|.+..+|. +..++
T Consensus 65 ~~~L~~L~l~~n~i~~---~~~~~~l~~L~~L~L~~n~------i~--~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~ 132 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNK------IT--DISALQNLTNLRELYLNEDNISDISP-LANLT 132 (347)
T ss_dssp CTTCCEEECCSSCCCC---CGGGTTCTTCCEEECCSSC------CC--CCGGGTTCTTCSEEECTTSCCCCCGG-GTTCT
T ss_pred cCCccEEEccCCcccc---chhhhcCCcCCEEEccCCc------cc--CchHHcCCCcCCEEECcCCcccCchh-hccCC
Confidence 4578888887665433 3447788999999876654 21 23457799999999999999999876 89999
Q ss_pred cccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCceE
Q 047584 625 YLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFV 704 (883)
Q Consensus 625 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 704 (883)
+|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|++++|. +..++. +..+++|+.| .
T Consensus 133 ~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L---~ 205 (347)
T 4fmz_A 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYF---T 205 (347)
T ss_dssp TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEE---E
T ss_pred ceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCcccee---e
Confidence 999999999966655566999999999999996 4566655 8899999999999998 777765 6677777766 3
Q ss_pred eCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCC
Q 047584 705 VAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHA 784 (883)
Q Consensus 705 ~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 784 (883)
...+....+..+..+++|+ .|.+.+..-.. .+. +..+++|+.|++++|... .+..+..++
T Consensus 206 l~~n~l~~~~~~~~~~~L~-~L~l~~n~l~~-----~~~-~~~l~~L~~L~l~~n~l~-------------~~~~~~~l~ 265 (347)
T 4fmz_A 206 AYVNQITDITPVANMTRLN-SLKIGNNKITD-----LSP-LANLSQLTWLEIGTNQIS-------------DINAVKDLT 265 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCC-EEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCC-------------CCGGGTTCT
T ss_pred cccCCCCCCchhhcCCcCC-EEEccCCccCC-----Ccc-hhcCCCCCEEECCCCccC-------------CChhHhcCC
Confidence 3333333344477788888 78776543221 112 778899999999886322 123466778
Q ss_pred CcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCcccceecCCCccCCCCCCCCCC
Q 047584 785 NLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPY 863 (883)
Q Consensus 785 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~ 863 (883)
+|+.|++++|.+..+|. +. .+++|+.|+|++|......+ .++.+++|++|+|++|+ +..++. +. .+++
T Consensus 266 ~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~------~l~~ 334 (347)
T 4fmz_A 266 KLKMLNVGSNQISDISV-LN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LA------SLSK 334 (347)
T ss_dssp TCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GG------GCTT
T ss_pred CcCEEEccCCccCCChh-hc--CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hh------hhhc
Confidence 99999999999888764 43 38999999999997655444 67889999999999985 555543 33 4999
Q ss_pred cceeeccccc
Q 047584 864 LETLRFEDME 873 (883)
Q Consensus 864 L~~L~l~~~~ 873 (883)
|+.|++++++
T Consensus 335 L~~L~l~~N~ 344 (347)
T 4fmz_A 335 MDSADFANQV 344 (347)
T ss_dssp CSEESSSCC-
T ss_pred cceeehhhhc
Confidence 9999999875
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=211.77 Aligned_cols=298 Identities=19% Similarity=0.155 Sum_probs=184.3
Q ss_pred cCCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCcc-ccC
Q 047584 544 FSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDS-VGD 622 (883)
Q Consensus 544 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~-i~~ 622 (883)
.+..+++|.+..+...... ...+..+++|+.|.+..+. +..-.+..+.++++|++|+|++|.+..+|.. +.+
T Consensus 30 ~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENI------VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp CCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred CCCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCc------cCEeChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence 4556777776655443221 2345567777777665433 2222233445777777777777777777653 577
Q ss_pred CCcccEEeccCCCcccc-ccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCc-cCCCCCCCCcc
Q 047584 623 LRYLRYLNLSGTVIRSL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPL-GIVRLTCLQTL 700 (883)
Q Consensus 623 l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L 700 (883)
+++|++|+|++|.++.+ |..+.++++|++|++++|......|..+..+++|++|++++|. +..+|. .+..+++|+.|
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEE
Confidence 77777777777777765 4567777777777777743333334567777777777777776 555554 36666777666
Q ss_pred CceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCC
Q 047584 701 CNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVL 780 (883)
Q Consensus 701 ~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 780 (883)
.... +.........+.++++|+ .|.+.+...... ++.......+|+.|++++|..... ....+
T Consensus 182 ~l~~-n~i~~~~~~~~~~l~~L~-~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~-----------~~~~~ 244 (477)
T 2id5_A 182 RLRH-LNINAIRDYSFKRLYRLK-VLEISHWPYLDT----MTPNCLYGLNLTSLSITHCNLTAV-----------PYLAV 244 (477)
T ss_dssp EEES-CCCCEECTTCSCSCTTCC-EEEEECCTTCCE----ECTTTTTTCCCSEEEEESSCCCSC-----------CHHHH
T ss_pred eCCC-CcCcEeChhhcccCcccc-eeeCCCCccccc----cCcccccCccccEEECcCCccccc-----------CHHHh
Confidence 3221 112222223455666666 666665432211 122223334788888876522210 11124
Q ss_pred CCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCcccceecCCCccCCCCCC
Q 047584 781 KPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASI 859 (883)
Q Consensus 781 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~ 859 (883)
..+++|+.|++++|.+..++.... ..+++|+.|+|++|......| .+..+++|+.|+|++| .++.++...+.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~----- 317 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSML-HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFH----- 317 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSC-TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBS-----
T ss_pred cCccccCeeECCCCcCCccChhhc-cccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcC-----
Confidence 456788889998888777654322 237889999999886655444 6788899999999877 67777665443
Q ss_pred CCCCcceeeccccc
Q 047584 860 PFPYLETLRFEDME 873 (883)
Q Consensus 860 ~~p~L~~L~l~~~~ 873 (883)
.+++|+.|+|+++|
T Consensus 318 ~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 318 SVGNLETLILDSNP 331 (477)
T ss_dssp CGGGCCEEECCSSC
T ss_pred CCcccCEEEccCCC
Confidence 48899999998765
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=7.5e-21 Score=204.28 Aligned_cols=233 Identities=15% Similarity=0.202 Sum_probs=131.1
Q ss_pred CchhhhcCCCceeEEeeCC-CCCC-CcCccccCCCcccEEeccCCCcc-ccccccccCCCccEEecCCCCchhhchhhhc
Q 047584 592 SILPKLLKLQRLRVFSLRG-YCIP-ELPDSVGDLRYLRYLNLSGTVIR-SLPESVNKLYNLHSLLLEDCDRLKKLCADMG 668 (883)
Q Consensus 592 ~~~~~l~~l~~Lr~L~L~~-~~~~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~ 668 (883)
.++..+.++++|++|+|++ |.+. .+|..++++++|++|+|++|.++ .+|..+.++++|++|++++|.....+|..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 3455666778888888874 6654 56777788888888888888877 6677788888888888887544346777778
Q ss_pred CcCCCCceecCCCCCccccCccCCCCC-CCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCC
Q 047584 669 NLIKLHHLKNSNTDSLEEMPLGIVRLT-CLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDG 747 (883)
Q Consensus 669 ~L~~L~~L~l~~~~~~~~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 747 (883)
.+++|++|++++|.....+|..++.++ +|++|.... +...+.....+..++ |+ .|.+.+.. .....+..+..
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~~~~~l~-L~-~L~Ls~N~----l~~~~~~~~~~ 219 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTFANLN-LA-FVDLSRNM----LEGDASVLFGS 219 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCGGGGGCC-CS-EEECCSSE----EEECCGGGCCT
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC-CeeeccCChHHhCCc-cc-EEECcCCc----ccCcCCHHHhc
Confidence 888888888888773336777777776 666662211 111111222233332 33 33333210 11122334555
Q ss_pred CCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCC-CCCcCCCcCCCCCeeEEEEecCCCCCCCC
Q 047584 748 KKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGM-KFPTWLGDSLFSNLVTLKFENCGICTALP 826 (883)
Q Consensus 748 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 826 (883)
+++|+.|++++|... ..+..+..+++|++|++++|.+. .+|.++.. +++|+.|+|++|...+.+|
T Consensus 220 l~~L~~L~L~~N~l~------------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLA------------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ--LKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp TSCCSEEECCSSEEC------------CBGGGCCCCTTCCEEECCSSCCEECCCGGGGG--CTTCCEEECCSSEEEEECC
T ss_pred CCCCCEEECCCCcee------------eecCcccccCCCCEEECcCCcccCcCChHHhc--CcCCCEEECcCCcccccCC
Confidence 555666655543111 01111333455555555555554 44555533 5555555555555444455
Q ss_pred CCCCcCcccceeccCcccc
Q 047584 827 SVGQLPSLKHLVVCGMSSV 845 (883)
Q Consensus 827 ~l~~lp~L~~L~L~~~~~l 845 (883)
..+.+++|+.|++++|+.+
T Consensus 286 ~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 286 QGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CSTTGGGSCGGGTCSSSEE
T ss_pred CCccccccChHHhcCCCCc
Confidence 4455555555555555433
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=2.3e-20 Score=212.28 Aligned_cols=295 Identities=15% Similarity=0.121 Sum_probs=192.1
Q ss_pred cCCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchh-hhcCCCceeEEeeCCCCCCCc-Ccccc
Q 047584 544 FSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILP-KLLKLQRLRVFSLRGYCIPEL-PDSVG 621 (883)
Q Consensus 544 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~-~l~~l~~Lr~L~L~~~~~~~l-p~~i~ 621 (883)
.+..+++|.+..+..... ....+.++++|+.|.+..+. +...+++ .+.++++|++|+|++|.+..+ |..++
T Consensus 28 l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~------~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQT------PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp CCTTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCS------TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CCCccCEEEecCCccCcC-ChhHhccCccccEEECcCCc------ccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 557788888876654332 13456788889988876543 2223333 345889999999999998876 77889
Q ss_pred CCCcccEEeccCCCccc-cccc--cccCCCccEEecCCCCchhhc-hhh-hcCcCCCCceecCCCCCccccCccCCCC--
Q 047584 622 DLRYLRYLNLSGTVIRS-LPES--VNKLYNLHSLLLEDCDRLKKL-CAD-MGNLIKLHHLKNSNTDSLEEMPLGIVRL-- 694 (883)
Q Consensus 622 ~l~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~l~~c~~l~~l-p~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~L-- 694 (883)
++++|++|++++|.++. +|.. +.++++|++|++++|. +..+ |.. +.++++|++|++++|......|..+..+
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 99999999999999885 4544 8899999999999964 4444 555 7899999999999987333334444443
Q ss_pred --------------------------------CCCCccCceEeCcCCCC--Cccccc-----------------------
Q 047584 695 --------------------------------TCLQTLCNFVVAKDSGS--GLRELK----------------------- 717 (883)
Q Consensus 695 --------------------------------~~L~~L~~~~~~~~~~~--~~~~l~----------------------- 717 (883)
++|++| +++.+... ....+.
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L---~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL---DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEE---ECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeE---ecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence 222222 22111100 000000
Q ss_pred ----------------ccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCC
Q 047584 718 ----------------SLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLK 781 (883)
Q Consensus 718 ----------------~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 781 (883)
..++|+ .|.+.+. ......+..+..+++|+.|++++|... ......+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~-~L~l~~n----~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----------~~~~~~~~ 320 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVK-TCDLSKS----KIFALLKSVFSHFTDLEQLTLAQNEIN-----------KIDDNAFW 320 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCC-EEECCSS----CCCEECTTTTTTCTTCCEEECTTSCCC-----------EECTTTTT
T ss_pred chhhhccCcccccccccccCce-EEEecCc----cccccchhhcccCCCCCEEECCCCccc-----------ccChhHhc
Confidence 001222 2222221 111223445667777888887664221 11233556
Q ss_pred CCCCcceEEEEecCCCCC-CcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCcccceecCCCccCCCCCC
Q 047584 782 PHANLEQFCIKGYGGMKF-PTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASI 859 (883)
Q Consensus 782 ~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~ 859 (883)
.+++|+.|++++|.+..+ |.++.. +++|+.|+|++|......| .++.+++|++|+|++| .++.++.....
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~----- 392 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFEN--LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFD----- 392 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTT-----
T ss_pred CcccCCEEECCCCccCCcChhHhcC--cccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhc-----
Confidence 678999999999888766 455543 8999999999997655445 7888999999999987 66677765433
Q ss_pred CCCCcceeeccccc
Q 047584 860 PFPYLETLRFEDME 873 (883)
Q Consensus 860 ~~p~L~~L~l~~~~ 873 (883)
.+++|+.|+++++|
T Consensus 393 ~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 393 RLTSLQKIWLHTNP 406 (455)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCCcccEEEccCCC
Confidence 48999999998743
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=3.2e-19 Score=204.07 Aligned_cols=270 Identities=17% Similarity=0.149 Sum_probs=199.4
Q ss_pred CCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCccccccc-cccCC
Q 047584 570 IQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSLPES-VNKLY 647 (883)
Q Consensus 570 ~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~ 647 (883)
.++++.|.+..+. +..-.+..+.++++|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. +.+++
T Consensus 31 ~~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 31 PTETRLLDLGKNR------IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp CTTCSEEECCSSC------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCCcEEECCCCc------cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 3577887765543 3322234556899999999999999887 77899999999999999999999864 78999
Q ss_pred CccEEecCCCCchhhchhhhcCcCCCCceecCCCCCcccc-CccCCCCCCCCccCceEeCcCCCCCcccccccccCCCee
Q 047584 648 NLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEM-PLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTL 726 (883)
Q Consensus 648 ~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L 726 (883)
+|++|++++|......|..+..+++|++|++++|. +..+ |..++.+++|++|.. ..+.........+.++++|+ .|
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~l~~l~~L~-~L 181 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTL-EKCNLTSIPTEALSHLHGLI-VL 181 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEE-ESCCCSSCCHHHHTTCTTCC-EE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEEC-CCCcCcccChhHhcccCCCc-EE
Confidence 99999999965444456779999999999999998 5544 557888899988843 22233333344577888888 78
Q ss_pred EEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcC-CCc
Q 047584 727 KISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTW-LGD 805 (883)
Q Consensus 727 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~ 805 (883)
.+.+... .......+..+++|+.|+++.|.... ..........+|+.|++++|.+..+|.. +.
T Consensus 182 ~l~~n~i----~~~~~~~~~~l~~L~~L~l~~~~~~~-----------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~- 245 (477)
T 2id5_A 182 RLRHLNI----NAIRDYSFKRLYRLKVLEISHWPYLD-----------TMTPNCLYGLNLTSLSITHCNLTAVPYLAVR- 245 (477)
T ss_dssp EEESCCC----CEECTTCSCSCTTCCEEEEECCTTCC-----------EECTTTTTTCCCSEEEEESSCCCSCCHHHHT-
T ss_pred eCCCCcC----cEeChhhcccCcccceeeCCCCcccc-----------ccCcccccCccccEEECcCCcccccCHHHhc-
Confidence 8775322 22233467889999999998853221 0112222335899999999999988853 43
Q ss_pred CCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCcccceecC-CCccCCCCCCCCCCcceeecccc
Q 047584 806 SLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMSSVRRLD-PEFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 806 ~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~i~-~~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
.+++|+.|+|++|......+ .+..+++|+.|+|++| .+..++ ..|. .+++|+.|+|+++
T Consensus 246 -~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~------~l~~L~~L~L~~N 306 (477)
T 2id5_A 246 -HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFR------GLNYLRVLNVSGN 306 (477)
T ss_dssp -TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBT------TCTTCCEEECCSS
T ss_pred -CccccCeeECCCCcCCccChhhccccccCCEEECCCC-ccceECHHHhc------CcccCCEEECCCC
Confidence 38999999999997554333 6889999999999988 555554 3333 4899999998874
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=1.5e-20 Score=227.44 Aligned_cols=86 Identities=15% Similarity=0.219 Sum_probs=60.7
Q ss_pred CCCCCCcceEEEEecCCC-CCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCcccceecCCCccCCCC
Q 047584 780 LKPHANLEQFCIKGYGGM-KFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDA 857 (883)
Q Consensus 780 l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~ 857 (883)
+..+++|+.|++++|.+. .+|..++. +++|+.|+|++|...+.+| .++.+++|+.|+|++|...+.+|..+..
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~--l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~--- 702 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGS--MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA--- 702 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGG--CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG---
T ss_pred hhccccccEEECcCCcccccCCHHHhc--cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC---
Confidence 444567777888877766 56777754 7788888888877766666 6777788888888877555566665544
Q ss_pred CCCCCCcceeeccccc
Q 047584 858 SIPFPYLETLRFEDME 873 (883)
Q Consensus 858 ~~~~p~L~~L~l~~~~ 873 (883)
+++|+.|++++++
T Consensus 703 ---l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 703 ---LTMLTEIDLSNNN 715 (768)
T ss_dssp ---CCCCSEEECCSSE
T ss_pred ---CCCCCEEECcCCc
Confidence 7777777777653
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=7.2e-21 Score=224.89 Aligned_cols=257 Identities=13% Similarity=0.131 Sum_probs=192.3
Q ss_pred chhhhcCCCceeEEeeCCCCCCC------------------cCcccc--CCCcccEEeccCCCcc-ccccccccCCCccE
Q 047584 593 ILPKLLKLQRLRVFSLRGYCIPE------------------LPDSVG--DLRYLRYLNLSGTVIR-SLPESVNKLYNLHS 651 (883)
Q Consensus 593 ~~~~l~~l~~Lr~L~L~~~~~~~------------------lp~~i~--~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 651 (883)
++..+.++++|++|+|++|.++. +|..++ ++++|++|+|++|.+. .+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 56667799999999999999998 999999 9999999999999866 78999999999999
Q ss_pred EecCCCCchh--hchhhhcCc------CCCCceecCCCCCccccCc--cCCCCCCCCccCceEeCcCCCCCccccccccc
Q 047584 652 LLLEDCDRLK--KLCADMGNL------IKLHHLKNSNTDSLEEMPL--GIVRLTCLQTLCNFVVAKDSGSGLRELKSLTH 721 (883)
Q Consensus 652 L~l~~c~~l~--~lp~~i~~L------~~L~~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~ 721 (883)
|++++|..+. .+|..++.+ ++|++|++++|. +..+|. .++++++|++|.... +...+. +..+.++++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~-N~l~g~-ip~~~~l~~ 354 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLY-NQLEGK-LPAFGSEIK 354 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCS-CCCEEE-CCCCEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcC-CcCccc-hhhhCCCCC
Confidence 9999976354 699988887 999999999998 779998 899999999884322 111112 226667777
Q ss_pred CCCeeEEeccCCCCCccchHhhhcCCCCC-CCceEEEeccCCCCCCCcchhhHHhhhcCCCC--CCCcceEEEEecCCCC
Q 047584 722 LERTLKISKLENVKCVGDAMEAQMDGKKN-LKELSLNWTCSTDGSSSREAETEMGVLDVLKP--HANLEQFCIKGYGGMK 798 (883)
Q Consensus 722 L~~~L~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~L~~L~l~~~~~~~ 798 (883)
|+ .|.+.+.. ...++..+..+++ |+.|++++|... .....+.. +++|+.|++++|.+..
T Consensus 355 L~-~L~L~~N~-----l~~lp~~l~~l~~~L~~L~Ls~N~l~------------~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 355 LA-SLNLAYNQ-----ITEIPANFCGFTEQVENLSFAHNKLK------------YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp ES-EEECCSSE-----EEECCTTSEEECTTCCEEECCSSCCS------------SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CC-EEECCCCc-----cccccHhhhhhcccCcEEEccCCcCc------------ccchhhhhcccCccCEEECcCCcCCC
Confidence 77 66665421 1135566888888 999999886322 12223333 3489999999998765
Q ss_pred -CCcCCCc-----CCCCCeeEEEEecCCCCCCCCC--CCCcCcccceeccCcccceecCCCccCCC--CCCCCCCcceee
Q 047584 799 -FPTWLGD-----SLFSNLVTLKFENCGICTALPS--VGQLPSLKHLVVCGMSSVRRLDPEFYGKD--ASIPFPYLETLR 868 (883)
Q Consensus 799 -~p~~~~~-----~~l~~L~~L~L~~~~~~~~l~~--l~~lp~L~~L~L~~~~~l~~i~~~~~~~~--~~~~~p~L~~L~ 868 (883)
.|.++.. ..+++|+.|+|++|... .+|. +..+++|++|+|++| .+..+|....... ....+++|+.|+
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEE
T ss_pred cchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEE
Confidence 5665540 03679999999999655 5662 556899999999988 5668876554310 011234999999
Q ss_pred cccc
Q 047584 869 FEDM 872 (883)
Q Consensus 869 l~~~ 872 (883)
++++
T Consensus 495 Ls~N 498 (636)
T 4eco_A 495 LRFN 498 (636)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 9986
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=4.2e-20 Score=218.37 Aligned_cols=303 Identities=13% Similarity=0.121 Sum_probs=187.3
Q ss_pred CCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCC-CchhhhcCC------CceeEEeeCCCCCCCcC
Q 047584 545 SRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAP-SILPKLLKL------QRLRVFSLRGYCIPELP 617 (883)
Q Consensus 545 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~-~~~~~l~~l------~~Lr~L~L~~~~~~~lp 617 (883)
...+++|.+..+.... .....+.++++|+.|.+..+.. +.+ .++..+.++ ++|++|++++|.++.+|
T Consensus 248 l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~-----l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip 321 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRG-----ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321 (636)
T ss_dssp CTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTT-----SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC
T ss_pred cCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCC-----CccccchHHHHhhhccccCCCCCEEECCCCcCCccC
Confidence 3567888887765432 1234567788888887655431 344 456666555 89999999999999999
Q ss_pred c--cccCCCcccEEeccCCCcc-ccccccccCCCccEEecCCCCchhhchhhhcCcCC-CCceecCCCCCccccCccCCC
Q 047584 618 D--SVGDLRYLRYLNLSGTVIR-SLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIK-LHHLKNSNTDSLEEMPLGIVR 693 (883)
Q Consensus 618 ~--~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~-L~~L~l~~~~~~~~~p~~i~~ 693 (883)
. .++++++|++|++++|.++ .+| .++++++|++|++++| .+..+|..+..+++ |++|++++|. +..+|..++.
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~ 398 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDA 398 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCT
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-Ccccchhhhh
Confidence 8 8999999999999999999 899 8999999999999984 56688988999999 9999999988 6788887766
Q ss_pred CC--CCCccCceEeCcCCCCCccccc-------ccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCC
Q 047584 694 LT--CLQTLCNFVVAKDSGSGLRELK-------SLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDG 764 (883)
Q Consensus 694 L~--~L~~L~~~~~~~~~~~~~~~l~-------~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 764 (883)
++ +|++|... .+...+.....+. .+++|+ .|.+.+..-. ......+..+++|+.|+++.|.....
T Consensus 399 ~~l~~L~~L~Ls-~N~l~~~~p~~l~~~~~~~~~~~~L~-~L~Ls~N~l~----~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 399 KSVSVMSAIDFS-YNEIGSVDGKNFDPLDPTPFKGINVS-SINLSNNQIS----KFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp TCSSCEEEEECC-SSCTTTTTTCSSCTTCSSCCCCCCEE-EEECCSSCCC----SCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred cccCccCEEECc-CCcCCCcchhhhcccccccccCCCCC-EEECcCCccC----cCCHHHHccCCCCCEEECCCCCCCCc
Confidence 54 66666321 1112222222233 334444 4444332111 11111233455666666655432211
Q ss_pred CCCcchhh--------H-----------HhhhcCCC--CCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEec-----
Q 047584 765 SSSREAET--------E-----------MGVLDVLK--PHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFEN----- 818 (883)
Q Consensus 765 ~~~~~~~~--------~-----------~~~l~~l~--~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~----- 818 (883)
+....... . ..+...+. .+++|+.|++++|.+..+|.++.. +++|+.|+|++
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~--l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN--SSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGG--CSSCCEEECCSCBCTT
T ss_pred CHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhc--CCCCCEEECCCCcccc
Confidence 11000000 0 00111222 456666666666666666666643 66777777643
Q ss_pred -CCCCCCCC-CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccccc
Q 047584 819 -CGICTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 819 -~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
|...+.+| .++.+++|+.|+|++| .++.+|.. .+++|+.|+++++|
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~--------~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK--------ITPNISVLDIKDNP 598 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC--------CCTTCCEEECCSCT
T ss_pred cCcccccChHHHhcCCCCCEEECCCC-cCCccCHh--------HhCcCCEEECcCCC
Confidence 33344455 5666777777777666 34556543 24677788777765
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=3.3e-20 Score=200.54 Aligned_cols=221 Identities=22% Similarity=0.335 Sum_probs=173.2
Q ss_pred CCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCc
Q 047584 570 IQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNL 649 (883)
Q Consensus 570 ~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L 649 (883)
.++++.|.+.++. + ..+++.++++++|++|+|++|.+..+|..++++++|++|+|++|.++.+|..++++++|
T Consensus 80 ~~~l~~L~L~~n~------l-~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVP------L-PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSC------C-SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred ccceeEEEccCCC------c-hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 4556666655443 2 24555677899999999999999999999999999999999999999999999999999
Q ss_pred cEEecCCCCchhhchhhhcC---------cCCCCceecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccc
Q 047584 650 HSLLLEDCDRLKKLCADMGN---------LIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLT 720 (883)
Q Consensus 650 ~~L~l~~c~~l~~lp~~i~~---------L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~ 720 (883)
++|++++|+.+..+|..+.. +++|++|++++|. +..+|..++++++|++|... .+
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~---~N------------ 216 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIR---NS------------ 216 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEE---SS------------
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEcc---CC------------
Confidence 99999998888899987765 9999999999997 77888888888777777211 11
Q ss_pred cCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCC-CC
Q 047584 721 HLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGM-KF 799 (883)
Q Consensus 721 ~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~ 799 (883)
.+.. ++..+..+++|+.|++++|.... .....+..+++|+.|++++|... .+
T Consensus 217 ---------~l~~-------l~~~l~~l~~L~~L~Ls~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 217 ---------PLSA-------LGPAIHHLPKLEELDLRGCTALR-----------NYPPIFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp ---------CCCC-------CCGGGGGCTTCCEEECTTCTTCC-----------BCCCCTTCCCCCCEEECTTCTTCCBC
T ss_pred ---------CCCc-------CchhhccCCCCCEEECcCCcchh-----------hhHHHhcCCCCCCEEECCCCCchhhc
Confidence 0110 12235567788888887653221 13345667789999999987644 57
Q ss_pred CcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCc
Q 047584 800 PTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGM 842 (883)
Q Consensus 800 p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~ 842 (883)
|.++.. +++|+.|+|++|+..+.+| .++.+++|+.+++..+
T Consensus 270 p~~~~~--l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 270 PLDIHR--LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTGGG--CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred chhhhc--CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 888764 9999999999999999888 8999999999999754
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=1.1e-19 Score=218.26 Aligned_cols=302 Identities=16% Similarity=0.155 Sum_probs=179.8
Q ss_pred CCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCC-CchhhhcC-------CCceeEEeeCCCCCCCc
Q 047584 545 SRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAP-SILPKLLK-------LQRLRVFSLRGYCIPEL 616 (883)
Q Consensus 545 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~-~~~~~l~~-------l~~Lr~L~L~~~~~~~l 616 (883)
...+++|.+..+.... .....+.++++|+.|.+..+.. +.+ .++..+.+ +++|++|+|++|.+..+
T Consensus 490 L~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~-----lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i 563 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRG-----ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563 (876)
T ss_dssp CTTCCEEEEESCTTCC-SCCGGGGGCSSCCEEECTTCTT-----SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC
T ss_pred CCCCCEEECcCCCCCc-cChHHHhCCCCCCEEECcCCCC-----cccccchHHHHhhhhcccccCCccEEEeeCCcCCcc
Confidence 3567888887665432 1234567888899888765431 333 34544444 44999999999999999
Q ss_pred Cc--cccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCC-CCceecCCCCCccccCccCCC
Q 047584 617 PD--SVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIK-LHHLKNSNTDSLEEMPLGIVR 693 (883)
Q Consensus 617 p~--~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~-L~~L~l~~~~~~~~~p~~i~~ 693 (883)
|. .++++++|++|+|++|.++.+| .++++++|++|++++| .+..+|..+..+++ |++|++++|. +..+|..++.
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~ 640 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNA 640 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCT
T ss_pred CChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCchhhhc
Confidence 98 8999999999999999999888 8899999999999985 45688988999998 9999999988 6788877766
Q ss_pred CCC--CCccCceEeCcCCCC--Cc-cccc--ccccCCCeeEEeccCCCCCccchHhh-hcCCCCCCCceEEEeccCCCCC
Q 047584 694 LTC--LQTLCNFVVAKDSGS--GL-RELK--SLTHLERTLKISKLENVKCVGDAMEA-QMDGKKNLKELSLNWTCSTDGS 765 (883)
Q Consensus 694 L~~--L~~L~~~~~~~~~~~--~~-~~l~--~L~~L~~~L~i~~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~ 765 (883)
++. |+.|..-.. ...+. .+ ..+. .+.+|+ .|.+.+..-. .++. .+..+++|+.|+|+.|.....+
T Consensus 641 ~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~~~~~~~L~-~L~Ls~N~L~-----~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 641 KSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINAS-TVTLSYNEIQ-----KFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp TCSSCEEEEECCSS-CTTTTSSSCSSCTTTCCCCCEE-EEECCSSCCC-----SCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred cccCCCCEEECcCC-cCCCccccchhhhccccCCCcC-EEEccCCcCC-----ccCHHHHccCCCCCEEECCCCcCCccC
Confidence 543 665522111 11110 00 1111 112333 3333221110 1111 1224455555555443221111
Q ss_pred CCcchh------------------hH-HhhhcCCC--CCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEec------
Q 047584 766 SSREAE------------------TE-MGVLDVLK--PHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFEN------ 818 (883)
Q Consensus 766 ~~~~~~------------------~~-~~~l~~l~--~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~------ 818 (883)
...... +. ..+...+. .+++|+.|+|++|.+..+|..+.. +++|+.|+|++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~--L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN--SSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGG--CTTCCEEECCCCBCTTC
T ss_pred hHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhc--CCCCCEEECCCCCCccc
Confidence 000000 00 00111222 456666666666666666666543 66777777755
Q ss_pred CCCCCCCC-CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccccc
Q 047584 819 CGICTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 819 ~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
|.....+| .++.+++|+.|+|++| .++.+|.. .+++|+.|+|++++
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~--------l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK--------LTPQLYILDIADNP 838 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC--------CCSSSCEEECCSCT
T ss_pred ccccccChHHHhcCCCCCEEECCCC-CCCccCHh--------hcCCCCEEECCCCC
Confidence 33344455 5666777777777766 34666543 24678888887776
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=5.9e-20 Score=204.30 Aligned_cols=281 Identities=15% Similarity=0.141 Sum_probs=182.4
Q ss_pred CCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcC-ccccCCC
Q 047584 546 RNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELP-DSVGDLR 624 (883)
Q Consensus 546 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp-~~i~~l~ 624 (883)
..++++.+..+...... ...+..+++|+.|.+.++. +..-.+..+.++++|++|+|++|.+..+| ..+++++
T Consensus 45 ~~l~~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp CCCSEEEEESCEESEEC-THHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCceEEEecCCchhhCC-hhHhcccccCcEEECCCCc------ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 56777777655332211 1124567788888765543 22222234557888999999998888774 4578888
Q ss_pred cccEEeccCCCccccccc-cccCCCccEEecCCCCchhhc-hhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCc
Q 047584 625 YLRYLNLSGTVIRSLPES-VNKLYNLHSLLLEDCDRLKKL-CADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCN 702 (883)
Q Consensus 625 ~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 702 (883)
+|++|++++|.++.+|.. +.++++|++|++++| .+..+ |..+..+++|++|++++|. +..++ ++.+++|+.|..
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~l 193 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANV 193 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEEC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceeec
Confidence 999999999988888876 478889999999885 44444 4558888899999998887 55553 445555555421
Q ss_pred eEeCcCCCCCccccccc---------------------ccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccC
Q 047584 703 FVVAKDSGSGLRELKSL---------------------THLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCS 761 (883)
Q Consensus 703 ~~~~~~~~~~~~~l~~L---------------------~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 761 (883)
..+ .+..+... ++|+ .|.+.+..-. + ...+..+++|+.|++++|..
T Consensus 194 ---~~n---~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~-~L~l~~n~l~----~--~~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 194 ---SYN---LLSTLAIPIAVEELDASHNSINVVRGPVNVELT-ILKLQHNNLT----D--TAWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp ---CSS---CCSEEECCSSCSEEECCSSCCCEEECCCCSSCC-EEECCSSCCC----C--CGGGGGCTTCSEEECCSSCC
T ss_pred ---ccc---cccccCCCCcceEEECCCCeeeecccccccccc-EEECCCCCCc----c--cHHHcCCCCccEEECCCCcC
Confidence 111 11111111 2333 3333322111 1 13466677888888876522
Q ss_pred CCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceecc
Q 047584 762 TDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVC 840 (883)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~ 840 (883)
. ......+..+++|+.|++++|.+..+|.... .+++|+.|+|++|... .+| .++.+++|+.|+|+
T Consensus 261 ~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 261 E-----------KIMYHPFVKMQRLERLYISNNRLVALNLYGQ--PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326 (390)
T ss_dssp C-----------EEESGGGTTCSSCCEEECCSSCCCEEECSSS--CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred C-----------CcChhHccccccCCEEECCCCcCcccCcccC--CCCCCCEEECCCCcce-ecCccccccCcCCEEECC
Confidence 1 0123445667889999999888888777664 3889999999998654 444 67778899999998
Q ss_pred CcccceecCCCccCCCCCCCCCCcceeeccccc
Q 047584 841 GMSSVRRLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 841 ~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
+| .+..++ + ..+++|+.|+++++|
T Consensus 327 ~N-~i~~~~--~------~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 327 HN-SIVTLK--L------STHHTLKNLTLSHND 350 (390)
T ss_dssp SS-CCCCCC--C------CTTCCCSEEECCSSC
T ss_pred CC-ccceeC--c------hhhccCCEEEcCCCC
Confidence 87 455554 1 358999999998854
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.2e-20 Score=202.80 Aligned_cols=250 Identities=18% Similarity=0.205 Sum_probs=193.8
Q ss_pred CceeEEeeCCCCCC---CcCccccCCCcccEEeccC-CCcc-ccccccccCCCccEEecCCCCchhhchhhhcCcCCCCc
Q 047584 601 QRLRVFSLRGYCIP---ELPDSVGDLRYLRYLNLSG-TVIR-SLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHH 675 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~---~lp~~i~~l~~L~~L~L~~-~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~ 675 (883)
.+++.|+|++|.+. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.....+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5899999999999999995 8777 78999999999999999996554588999999999999
Q ss_pred eecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccc-cCCCeeEEeccCCCCCccchHhhhcCCCCCCCce
Q 047584 676 LKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLT-HLERTLKISKLENVKCVGDAMEAQMDGKKNLKEL 754 (883)
Q Consensus 676 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~-~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 754 (883)
|++++|.....+|..++.+++|++|... .+...+.....+.+++ .|+ .|.+.+.. .....+..+..++ |+.|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~~L~-~L~L~~N~----l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFD-GNRISGAIPDSYGSFSKLFT-SMTISRNR----LTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECC-SSCCEEECCGGGGCCCTTCC-EEECCSSE----EEEECCGGGGGCC-CSEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECc-CCcccCcCCHHHhhhhhcCc-EEECcCCe----eeccCChHHhCCc-ccEE
Confidence 9999998333788889999999988332 2222233455677776 777 67665421 2223444566665 9999
Q ss_pred EEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCc
Q 047584 755 SLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPS 833 (883)
Q Consensus 755 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~ 833 (883)
++++|... ......+..+++|+.|++++|.+...+..+. .+++|++|+|++|...+.+| .++.+++
T Consensus 203 ~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 203 DLSRNMLE-----------GDASVLFGSDKNTQKIHLAKNSLAFDLGKVG--LSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp ECCSSEEE-----------ECCGGGCCTTSCCSEEECCSSEECCBGGGCC--CCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred ECcCCccc-----------CcCCHHHhcCCCCCEEECCCCceeeecCccc--ccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 99875221 1134456778999999999998876555554 38999999999998776677 7889999
Q ss_pred ccceeccCcccceecCCCccCCCCCCCCCCcceeeccccccccc
Q 047584 834 LKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDMEEWED 877 (883)
Q Consensus 834 L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 877 (883)
|++|+|++|.-.+.+|.. ..+++|+.|++.++|.+-.
T Consensus 270 L~~L~Ls~N~l~~~ip~~-------~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG-------GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCEEECCSSEEEEECCCS-------TTGGGSCGGGTCSSSEEES
T ss_pred CCEEECcCCcccccCCCC-------ccccccChHHhcCCCCccC
Confidence 999999999655577753 2499999999999987654
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=3.3e-20 Score=224.46 Aligned_cols=302 Identities=16% Similarity=0.145 Sum_probs=204.8
Q ss_pred CCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCC-CcCccccCCC
Q 047584 546 RNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIP-ELPDSVGDLR 624 (883)
Q Consensus 546 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~-~lp~~i~~l~ 624 (883)
..++.|.+..+.... .....+..+++|+.|.+..+. +....+..+.++++|++|++++|.+. .+|..++.++
T Consensus 394 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 394 NTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNY------LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp CCCCEEECCSSEEEE-ECCGGGGGCTTCCEEECCSSE------EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CCccEEECCCCcccc-ccCHHHhcCCCCCEEECcCCc------ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 356666665443221 112345667778877765543 33445566668888999999988877 5688888888
Q ss_pred cccEEeccCCCcc-ccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCce
Q 047584 625 YLRYLNLSGTVIR-SLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNF 703 (883)
Q Consensus 625 ~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 703 (883)
+|++|++++|.++ .+|..+.++++|++|++++|.....+|..++.+++|++|++++|.....+|..++.+++|+.|...
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 8999999988888 678888888999999998876556788888889999999998888555788888888888887322
Q ss_pred EeCcCCCCCcccccccccCCC--------eeEEec---------------cCCC------------------CCccchHh
Q 047584 704 VVAKDSGSGLRELKSLTHLER--------TLKISK---------------LENV------------------KCVGDAME 742 (883)
Q Consensus 704 ~~~~~~~~~~~~l~~L~~L~~--------~L~i~~---------------l~~~------------------~~~~~~~~ 742 (883)
. +...+.....+.++..+.. ...+.+ +... .......+
T Consensus 547 ~-N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 547 T-NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp S-SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred C-CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 1 1111222222222111110 000000 0000 01112233
Q ss_pred hhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCC-CCCcCCCcCCCCCeeEEEEecCCC
Q 047584 743 AQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGM-KFPTWLGDSLFSNLVTLKFENCGI 821 (883)
Q Consensus 743 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~ 821 (883)
..+..+++|+.|+++.|... ..+...+..+++|+.|+|++|.+. .+|..+.. +++|+.|+|++|..
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~-----------g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~--L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLS-----------GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD--LRGLNILDLSSNKL 692 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCB-----------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG--CTTCCEEECCSSCC
T ss_pred hhhhccccccEEECcCCccc-----------ccCCHHHhccccCCEEeCcCCccCCCCChHHhC--CCCCCEEECCCCcc
Confidence 45677889999999886322 123445667789999999999987 68988865 99999999999988
Q ss_pred CCCCC-CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccccccc
Q 047584 822 CTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDMEEW 875 (883)
Q Consensus 822 ~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~L 875 (883)
.+.+| .++.+++|++|+|++|+-.+.||.. +.|.++..+.+.++|.|
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-------~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-------GQFETFPPAKFLNNPGL 740 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEEECCSS-------SSGGGSCGGGGCSCTEE
T ss_pred cCcCChHHhCCCCCCEEECcCCcccccCCCc-------hhhccCCHHHhcCCchh
Confidence 87888 7899999999999999777788853 23555555556666554
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=7.2e-19 Score=207.71 Aligned_cols=148 Identities=18% Similarity=0.097 Sum_probs=111.4
Q ss_pred ccCCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCc-Ccccc
Q 047584 543 CFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPEL-PDSVG 621 (883)
Q Consensus 543 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~l-p~~i~ 621 (883)
..+..+++|.+..+...... ...+.++++|+.|.+..+. +..-.+..+.++++|++|+|++|.+..+ |..++
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp TSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CCCCCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 35577888888766543321 2346788889988876543 3222233455899999999999999887 78899
Q ss_pred CCCcccEEeccCCCccccc-cccccCCCccEEecCCCCchh-hchhhhcCcCCCCceecCCCCCcccc-CccCCCCCCCC
Q 047584 622 DLRYLRYLNLSGTVIRSLP-ESVNKLYNLHSLLLEDCDRLK-KLCADMGNLIKLHHLKNSNTDSLEEM-PLGIVRLTCLQ 698 (883)
Q Consensus 622 ~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~ 698 (883)
++++|++|++++|.++.+| ..++++++|++|++++|.... .+|..++++++|++|++++|. +..+ |..++.+++|+
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENP 180 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCT
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccc
Confidence 9999999999999998886 678999999999999964332 578889999999999999987 5544 44566666665
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=5.1e-19 Score=212.65 Aligned_cols=298 Identities=13% Similarity=0.111 Sum_probs=185.6
Q ss_pred CCCeeEEEeEecCCccc----------------ccccccc--CCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEE
Q 047584 545 SRNLRHLSYIRGDYDGV----------------QRFGDLY--DIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVF 606 (883)
Q Consensus 545 ~~~~r~l~~~~~~~~~~----------------~~~~~~~--~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L 606 (883)
..+++.|.+..+..... .-+..+. ++++|+.|.+..+. +...++..+.++++|++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~------l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP------NMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT------TCCSCCGGGGGCSSCCEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC------CCccChHHHhCCCCCCEE
Confidence 35788888887765541 0223344 78899999886654 456667778899999999
Q ss_pred eeCCCC-CCC--cCccccCCC-------cccEEeccCCCcccccc--ccccCCCccEEecCCCCchhhchhhhcCcCCCC
Q 047584 607 SLRGYC-IPE--LPDSVGDLR-------YLRYLNLSGTVIRSLPE--SVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLH 674 (883)
Q Consensus 607 ~L~~~~-~~~--lp~~i~~l~-------~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~ 674 (883)
+|++|. ++. +|..++++. +|++|+|++|.++.+|. .++++++|++|++++| .+..+| .++.+++|+
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLT 598 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEES
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCCcce
Confidence 999998 875 787776665 99999999999999999 9999999999999995 456898 899999999
Q ss_pred ceecCCCCCccccCccCCCCCC-CCccCceEeCcCCCCCcccccccc--cCCCeeEEeccCCCCCccchHhhhcC--CCC
Q 047584 675 HLKNSNTDSLEEMPLGIVRLTC-LQTLCNFVVAKDSGSGLRELKSLT--HLERTLKISKLENVKCVGDAMEAQMD--GKK 749 (883)
Q Consensus 675 ~L~l~~~~~~~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~~l~~L~--~L~~~L~i~~l~~~~~~~~~~~~~l~--~~~ 749 (883)
+|++++|. +..+|..++.+++ |++|..... ... .....+..++ +|+ .|.+.+..-.... ..++..+. .+.
T Consensus 599 ~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N-~L~-~lp~~~~~~~~~~L~-~L~Ls~N~l~g~i-p~l~~~l~~~~~~ 673 (876)
T 4ecn_A 599 DLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLK-YIPNIFNAKSVYVMG-SVDFSYNKIGSEG-RNISCSMDDYKGI 673 (876)
T ss_dssp EEECCSSC-CSCCCTTSCEECTTCCEEECCSS-CCC-SCCSCCCTTCSSCEE-EEECCSSCTTTTS-SSCSSCTTTCCCC
T ss_pred EEECcCCc-cccchHHHhhccccCCEEECcCC-CCC-cCchhhhccccCCCC-EEECcCCcCCCcc-ccchhhhccccCC
Confidence 99999998 6799999999988 988833221 111 1112222222 244 4555432211100 11111222 345
Q ss_pred CCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCC-------------------------------CcceEEEEecCCCC
Q 047584 750 NLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHA-------------------------------NLEQFCIKGYGGMK 798 (883)
Q Consensus 750 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~-------------------------------~L~~L~l~~~~~~~ 798 (883)
+|+.|+++.|.....+. . . +..++ +|+.|+|++|.+..
T Consensus 674 ~L~~L~Ls~N~L~~lp~-----~---~---~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPT-----E---L---FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp CEEEEECCSSCCCSCCH-----H---H---HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred CcCEEEccCCcCCccCH-----H---H---HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 89999998864332110 0 0 01223 55555555555555
Q ss_pred CCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCc------ccceecCCCccCCCCCCCCCCcceeeccc
Q 047584 799 FPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGM------SSVRRLDPEFYGKDASIPFPYLETLRFED 871 (883)
Q Consensus 799 ~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~------~~l~~i~~~~~~~~~~~~~p~L~~L~l~~ 871 (883)
+|..+....+++|+.|+|++|.... +| .++.+++|+.|+|++| ...+.+|..+.. +++|+.|+|++
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~------L~~L~~L~Ls~ 815 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT------CPSLIQLQIGS 815 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG------CSSCCEEECCS
T ss_pred chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhc------CCCCCEEECCC
Confidence 5554431125555555555554333 33 4555555555555442 222333333322 66666666666
Q ss_pred cc
Q 047584 872 ME 873 (883)
Q Consensus 872 ~~ 873 (883)
|.
T Consensus 816 N~ 817 (876)
T 4ecn_A 816 ND 817 (876)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.4e-19 Score=212.67 Aligned_cols=262 Identities=16% Similarity=0.133 Sum_probs=169.8
Q ss_pred ccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCccccccc-cc
Q 047584 567 LYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLPES-VN 644 (883)
Q Consensus 567 ~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~ 644 (883)
+..+++|+.|.+.++. +..-.+..+..+++|++|+|++|.+..+|. .++++++|++|+|++|.++.+|.. ++
T Consensus 71 ~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 144 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144 (597)
T ss_dssp HHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred HccCCCCcEEECCCCC------CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc
Confidence 3456777777765443 222222345578888888888888877754 457888888888888888888766 47
Q ss_pred cCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccc----
Q 047584 645 KLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLT---- 720 (883)
Q Consensus 645 ~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~---- 720 (883)
++++|++|++++|......|..+..+++|++|++++|. +..+| ++.+++|+.|. +..+ .+..+....
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~---l~~n---~l~~l~~~~~L~~ 215 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHAN---VSYN---LLSTLAIPIAVEE 215 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEE---CCSS---CCSEEECCTTCSE
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhh---cccC---ccccccCCchhhe
Confidence 88888888888854333334467888888888888876 55553 44555555542 1111 111222222
Q ss_pred -----------------cCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCC
Q 047584 721 -----------------HLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPH 783 (883)
Q Consensus 721 -----------------~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~ 783 (883)
+|+ .|.+.+..- . . ...+..+++|+.|++++|... ......+..+
T Consensus 216 L~ls~n~l~~~~~~~~~~L~-~L~L~~n~l---~-~--~~~l~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l 277 (597)
T 3oja_B 216 LDASHNSINVVRGPVNVELT-ILKLQHNNL---T-D--TAWLLNYPGLVEVDLSYNELE-----------KIMYHPFVKM 277 (597)
T ss_dssp EECCSSCCCEEECSCCSCCC-EEECCSSCC---C-C--CGGGGGCTTCSEEECCSSCCC-----------EEESGGGTTC
T ss_pred eeccCCcccccccccCCCCC-EEECCCCCC---C-C--ChhhccCCCCCEEECCCCccC-----------CCCHHHhcCc
Confidence 233 333322111 1 1 134667788888888765221 1123455667
Q ss_pred CCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCcccceecCCCccCCCCCCCCC
Q 047584 784 ANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFP 862 (883)
Q Consensus 784 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p 862 (883)
++|+.|+|++|.+..+|.++.. +++|+.|+|++|... .+| .++.+++|+.|+|++| .+..++ + ..++
T Consensus 278 ~~L~~L~Ls~N~l~~l~~~~~~--l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N-~l~~~~--~------~~~~ 345 (597)
T 3oja_B 278 QRLERLYISNNRLVALNLYGQP--IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN-SIVTLK--L------STHH 345 (597)
T ss_dssp SSCCEEECTTSCCCEEECSSSC--CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS-CCCCCC--C------CTTC
T ss_pred cCCCEEECCCCCCCCCCccccc--CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC-CCCCcC--h------hhcC
Confidence 8899999999888888877643 889999999998655 454 6778899999999887 454444 1 3589
Q ss_pred Ccceeeccccc
Q 047584 863 YLETLRFEDME 873 (883)
Q Consensus 863 ~L~~L~l~~~~ 873 (883)
+|+.|+++++|
T Consensus 346 ~L~~L~l~~N~ 356 (597)
T 3oja_B 346 TLKNLTLSHND 356 (597)
T ss_dssp CCSEEECCSSC
T ss_pred CCCEEEeeCCC
Confidence 99999998865
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=1.4e-18 Score=197.76 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=42.2
Q ss_pred CCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeccCcccceecCCCccCCCCCCCC
Q 047584 782 PHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPF 861 (883)
Q Consensus 782 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~ 861 (883)
.+++|+.|++++|....+|. +. .+++|+.|+|++|...+ ++.++.+++|+.|++++| .+..++ .+ ..+
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~-~~--~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n-~l~~~~-~l------~~l 352 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP-IS--NLKNLTYLTLYFNNISD-ISPVSSLTKLQRLFFYNN-KVSDVS-SL------ANL 352 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG-GG--GCTTCSEEECCSSCCSC-CGGGGGCTTCCEEECCSS-CCCCCG-GG------TTC
T ss_pred CCCccCeEEcCCCcccCchh-hc--CCCCCCEEECcCCcCCC-chhhccCccCCEeECCCC-ccCCch-hh------ccC
Confidence 34555555555555554443 21 25566666666664332 233555666666666655 333332 11 247
Q ss_pred CCcceeecccc
Q 047584 862 PYLETLRFEDM 872 (883)
Q Consensus 862 p~L~~L~l~~~ 872 (883)
++|+.|++++|
T Consensus 353 ~~L~~L~l~~n 363 (466)
T 1o6v_A 353 TNINWLSAGHN 363 (466)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEeCCCC
Confidence 77777777765
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=1.1e-18 Score=198.85 Aligned_cols=279 Identities=19% Similarity=0.245 Sum_probs=170.4
Q ss_pred CCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCCc
Q 047584 546 RNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRY 625 (883)
Q Consensus 546 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~ 625 (883)
..++.|.+...... .++.+..+++|+.|.+..+. +. ..++ +.++++|++|++++|.+..++. ++++++
T Consensus 46 ~~l~~L~l~~~~i~---~l~~~~~l~~L~~L~Ls~n~------l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQ------LT-DITP-LKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp HTCCEEECCSSCCC---CCTTGGGCTTCCEEECCSSC------CC-CCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred ccccEEecCCCCCc---cCcchhhhcCCCEEECCCCc------cC-Cchh-hhccccCCEEECCCCccccChh-hcCCCC
Confidence 46788887655433 34556778889998876544 22 2223 6789999999999999988876 999999
Q ss_pred ccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCceEe
Q 047584 626 LRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVV 705 (883)
Q Consensus 626 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 705 (883)
|++|++++|.++.+|. +.++++|++|++++| .+..+|. +..+++|++|+++++ +..++. ++++++|++| ++
T Consensus 114 L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L---~l 184 (466)
T 1o6v_A 114 LTGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERL---DI 184 (466)
T ss_dssp CCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEE---EC
T ss_pred CCEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCEE---EC
Confidence 9999999999999876 899999999999985 5666653 666666666666432 233332 4455555444 22
Q ss_pred CcCCCCCcccccccccCCCeeEEeccCCCCCcc-----------------chHhhhcCCCCCCCceEEEeccCCCCCCCc
Q 047584 706 AKDSGSGLRELKSLTHLERTLKISKLENVKCVG-----------------DAMEAQMDGKKNLKELSLNWTCSTDGSSSR 768 (883)
Q Consensus 706 ~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~-----------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 768 (883)
..+....+..+.++++|+ .|.+.+........ ... ..+..+++|+.|++++|...
T Consensus 185 ~~n~l~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~------ 256 (466)
T 1o6v_A 185 SSNKVSDISVLAKLTNLE-SLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQIS------ 256 (466)
T ss_dssp CSSCCCCCGGGGGCTTCS-EEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC------
T ss_pred cCCcCCCChhhccCCCCC-EEEecCCcccccccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccc------
Confidence 222222233344444444 44443321110000 000 12334445555555443111
Q ss_pred chhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeccCcccceec
Q 047584 769 EAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKHLVVCGMSSVRRL 848 (883)
Q Consensus 769 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~i 848 (883)
.+..+..+++|+.|++++|.+..+|. +. .+++|+.|+|++|.. ..++.++.+++|+.|+|++| .+..+
T Consensus 257 -------~~~~~~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~L~~n-~l~~~ 324 (466)
T 1o6v_A 257 -------NLAPLSGLTKLTELKLGANQISNISP-LA--GLTALTNLELNENQL-EDISPISNLKNLTYLTLYFN-NISDI 324 (466)
T ss_dssp -------CCGGGTTCTTCSEEECCSSCCCCCGG-GT--TCTTCSEEECCSSCC-SCCGGGGGCTTCSEEECCSS-CCSCC
T ss_pred -------cchhhhcCCCCCEEECCCCccCcccc-cc--CCCccCeEEcCCCcc-cCchhhcCCCCCCEEECcCC-cCCCc
Confidence 01114455677777777777766665 32 377788888877753 34555777788888888777 34333
Q ss_pred CCCccCCCCCCCCCCcceeecccc
Q 047584 849 DPEFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 849 ~~~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
+. + ..+++|+.|++++|
T Consensus 325 ~~-~------~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 325 SP-V------SSLTKLQRLFFYNN 341 (466)
T ss_dssp GG-G------GGCTTCCEEECCSS
T ss_pred hh-h------ccCccCCEeECCCC
Confidence 32 2 24888888888775
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=2.7e-19 Score=198.88 Aligned_cols=267 Identities=19% Similarity=0.111 Sum_probs=176.2
Q ss_pred CCCCceEeeeccccCCCCCCCCCCchhhhc-CCCceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCcccccc-cccc
Q 047584 569 DIQHLRTFLPVMLTNSGPCYLAPSILPKLL-KLQRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLPE-SVNK 645 (883)
Q Consensus 569 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~-~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~ 645 (883)
.+++++.+.+.+... ..++..++ ++++|++|+|++|.+..++. .+..+++|++|++++|.++.+|+ .+++
T Consensus 43 ~l~~l~~l~l~~~~l-------~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESCEE-------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCceEEEecCCch-------hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 467888887755431 23444444 89999999999999998864 78999999999999999998864 5899
Q ss_pred CCCccEEecCCCCchhhchhh-hcCcCCCCceecCCCCCccccC-ccCCCCCCCCccCceEeCcCCCCCcccccccccCC
Q 047584 646 LYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLKNSNTDSLEEMP-LGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLE 723 (883)
Q Consensus 646 l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 723 (883)
+++|++|++++| .+..+|.. +..+++|++|++++|. +..++ ..++.+++|++|.... +..... .+..+++|+
T Consensus 116 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~---~~~~l~~L~ 189 (390)
T 3o6n_A 116 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSS-NRLTHV---DLSLIPSLF 189 (390)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCS-SCCSBC---CGGGCTTCS
T ss_pred CCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCC-CcCCcc---ccccccccc
Confidence 999999999994 67788876 5899999999999998 66664 4588888888884322 122222 244555565
Q ss_pred CeeEEeccCCCC--------------CccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceE
Q 047584 724 RTLKISKLENVK--------------CVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQF 789 (883)
Q Consensus 724 ~~L~i~~l~~~~--------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L 789 (883)
.+.+.+..-.. +.....+ ....++|+.|++++|... ....+..+++|+.|
T Consensus 190 -~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~l~-------------~~~~l~~l~~L~~L 253 (390)
T 3o6n_A 190 -HANVSYNLLSTLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHNNLT-------------DTAWLLNYPGLVEV 253 (390)
T ss_dssp -EEECCSSCCSEEECCSSCSEEECCSSCCCEEE--CCCCSSCCEEECCSSCCC-------------CCGGGGGCTTCSEE
T ss_pred -eeecccccccccCCCCcceEEECCCCeeeecc--ccccccccEEECCCCCCc-------------ccHHHcCCCCccEE
Confidence 45443211000 0000000 011235555555543211 11234556778888
Q ss_pred EEEecCCCCC-CcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceee
Q 047584 790 CIKGYGGMKF-PTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLR 868 (883)
Q Consensus 790 ~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~ 868 (883)
++++|.+..+ |..+.. +++|+.|+|++|......+.+..+|+|+.|+|++| .+..+|..+.. +++|+.|+
T Consensus 254 ~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~------l~~L~~L~ 324 (390)
T 3o6n_A 254 DLSYNELEKIMYHPFVK--MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQ------FDRLENLY 324 (390)
T ss_dssp ECCSSCCCEEESGGGTT--CSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHH------HTTCSEEE
T ss_pred ECCCCcCCCcChhHccc--cccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccc------cCcCCEEE
Confidence 8888776654 555543 77888888888754332224566788888888877 56666654433 77888887
Q ss_pred ccccc
Q 047584 869 FEDME 873 (883)
Q Consensus 869 l~~~~ 873 (883)
+++++
T Consensus 325 L~~N~ 329 (390)
T 3o6n_A 325 LDHNS 329 (390)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 77653
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=8.3e-19 Score=199.45 Aligned_cols=269 Identities=18% Similarity=0.188 Sum_probs=171.2
Q ss_pred CCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCC-Cc-CccccCCCcccEEeccCCCcccc-ccccccCC
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIP-EL-PDSVGDLRYLRYLNLSGTVIRSL-PESVNKLY 647 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~-~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~ 647 (883)
++++.|.+..+. +....+..+.++++|++|+|++|.+. .+ |..+.++++|++|+|++|.++.+ |..+++++
T Consensus 30 ~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNS------IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSC------CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CccCEEEecCCc------cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 678888775543 33333455679999999999999986 45 56789999999999999999977 77899999
Q ss_pred CccEEecCCCCchhhchhh--hcCcCCCCceecCCCCCcccc-Ccc-CCCCCCCCccCceEeCcCCCCCccccccc----
Q 047584 648 NLHSLLLEDCDRLKKLCAD--MGNLIKLHHLKNSNTDSLEEM-PLG-IVRLTCLQTLCNFVVAKDSGSGLRELKSL---- 719 (883)
Q Consensus 648 ~L~~L~l~~c~~l~~lp~~--i~~L~~L~~L~l~~~~~~~~~-p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L---- 719 (883)
+|++|++++|......|.. +..+++|++|++++|. +..+ |.. ++++++|++|..... ...+.....+.++
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKH 181 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCC-cccccChhhhhcccccc
Confidence 9999999997554455655 8999999999999998 5655 544 788888888832211 1112112222222
Q ss_pred ------------------------------ccCCCeeEEeccCCCCCccchHhhhcC---C-------------------
Q 047584 720 ------------------------------THLERTLKISKLENVKCVGDAMEAQMD---G------------------- 747 (883)
Q Consensus 720 ------------------------------~~L~~~L~i~~l~~~~~~~~~~~~~l~---~------------------- 747 (883)
++|+ .|.+.+.. .....+..+. .
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~----l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT-TLDLSGNG----FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE-EEECTTSC----CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred ccccccccCcccccchhhccccccccccccceee-eEecCCCc----ccccchhhhhccccccceeeEeecccccccccc
Confidence 2222 22222110 0000110000 0
Q ss_pred -----------------CCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCC-CcCCCcCCCC
Q 047584 748 -----------------KKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKF-PTWLGDSLFS 809 (883)
Q Consensus 748 -----------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~ 809 (883)
.++|+.|+++.|... ......+..+++|+.|++++|.+..+ |.++.. ++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~ 323 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-----------ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG--LT 323 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTT--CT
T ss_pred chhhhccCcccccccccccCceEEEecCcccc-----------ccchhhcccCCCCCEEECCCCcccccChhHhcC--cc
Confidence 123333433332110 01123355667788888888777665 445543 78
Q ss_pred CeeEEEEecCCCCCCCC-CCCCcCcccceeccCcccceec-CCCccCCCCCCCCCCcceeecccc
Q 047584 810 NLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMSSVRRL-DPEFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 810 ~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~i-~~~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
+|+.|+|++|......| .++.+++|++|+|++| .+..+ +..+. .+++|++|+++++
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~------~l~~L~~L~L~~N 381 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFL------GLPNLKELALDTN 381 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTT------TCTTCCEEECCSS
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCC-cccccChhhcc------ccccccEEECCCC
Confidence 88888888886543333 5677888888888877 45555 33333 4889999988874
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=3.9e-18 Score=192.72 Aligned_cols=253 Identities=17% Similarity=0.149 Sum_probs=157.4
Q ss_pred CCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCCc
Q 047584 546 RNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRY 625 (883)
Q Consensus 546 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~ 625 (883)
..+++|.+..+.... ++.+..+++|+.|.+..+. +.. + .+..+++|++|++++|.++.+| ++++++
T Consensus 42 ~~L~~L~Ls~n~l~~---~~~l~~l~~L~~L~Ls~n~------l~~-~--~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNN------ITT-L--DLSQNTNLTYLACDSNKLTNLD--VTPLTK 107 (457)
T ss_dssp TTCCEEECCSSCCCC---CTTGGGCTTCSEEECCSSC------CSC-C--CCTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred CCCCEEEccCCCccc---ChhhcccCCCCEEEccCCc------CCe-E--ccccCCCCCEEECcCCCCceee--cCCCCc
Confidence 456677666554332 3456677778887765543 211 1 1557788888888888887775 778888
Q ss_pred ccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCceEe
Q 047584 626 LRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVV 705 (883)
Q Consensus 626 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 705 (883)
|++|++++|.++.+| ++++++|++|++++| .+..+| ++.+++|++|++++|..+..+ .++.+++|++|. +
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~---l 177 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD---C 177 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE---C
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE---C
Confidence 888888888888775 778888888888874 455554 777888888888888545555 366677776663 2
Q ss_pred CcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCC
Q 047584 706 AKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHAN 785 (883)
Q Consensus 706 ~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 785 (883)
+.+....+. +..+++|+ .|.+.+..-.. . .+..+++|+.|++++|.... +. +..+++
T Consensus 178 s~n~l~~l~-l~~l~~L~-~L~l~~N~l~~-----~--~l~~l~~L~~L~Ls~N~l~~-------------ip-~~~l~~ 234 (457)
T 3bz5_A 178 SFNKITELD-VSQNKLLN-RLNCDTNNITK-----L--DLNQNIQLTFLDCSSNKLTE-------------ID-VTPLTQ 234 (457)
T ss_dssp CSSCCCCCC-CTTCTTCC-EEECCSSCCSC-----C--CCTTCTTCSEEECCSSCCSC-------------CC-CTTCTT
T ss_pred CCCccceec-cccCCCCC-EEECcCCcCCe-----e--ccccCCCCCEEECcCCcccc-------------cC-ccccCC
Confidence 222222222 55566666 56554322111 1 26677888888887652221 11 456678
Q ss_pred cceEEEEecCCCCCCcCCCcCCCCCeeE----------EEEecCCCCCCCCCCCCcCcccceeccCcccceecCC
Q 047584 786 LEQFCIKGYGGMKFPTWLGDSLFSNLVT----------LKFENCGICTALPSVGQLPSLKHLVVCGMSSVRRLDP 850 (883)
Q Consensus 786 L~~L~l~~~~~~~~p~~~~~~~l~~L~~----------L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~i~~ 850 (883)
|+.|++++|.+..+|.. .+++|+. |++++|.....+| .+.+++|+.|+|++|..++.+|.
T Consensus 235 L~~L~l~~N~l~~~~~~----~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDVS----TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CSEEECCSSCCSCCCCT----TCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCEEEeeCCcCCCcCHH----HCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceecc
Confidence 88888888877766632 2444444 3444443333333 45667777777777776666653
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=4.2e-18 Score=208.30 Aligned_cols=300 Identities=16% Similarity=0.086 Sum_probs=175.4
Q ss_pred cCCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCc-hhhhcCCCceeEEeeCCCCCCCc-Ccccc
Q 047584 544 FSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSI-LPKLLKLQRLRVFSLRGYCIPEL-PDSVG 621 (883)
Q Consensus 544 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~-~~~l~~l~~Lr~L~L~~~~~~~l-p~~i~ 621 (883)
.+..+++|.+..+..... ....+..+++|+.|.+..+. ....+ +..+.++++|++|+|++|.+..+ |..++
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~------~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQY------TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTC------CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCC------CccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 667889998887655432 23456788888888876543 22333 34456899999999999998876 77889
Q ss_pred CCCcccEEeccCCCccc-cccc--cccCCCccEEecCCCCchhhc--hhhhcCcCCCCceecCCCCCccccCccCCCC--
Q 047584 622 DLRYLRYLNLSGTVIRS-LPES--VNKLYNLHSLLLEDCDRLKKL--CADMGNLIKLHHLKNSNTDSLEEMPLGIVRL-- 694 (883)
Q Consensus 622 ~l~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~l~~c~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L-- 694 (883)
++++|++|+|++|.++. +|.. ++++++|++|++++|. +..+ +..++++++|++|++++|......|..++.+
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 99999999999998885 4554 8899999999999864 4433 3568899999999999887333445556555
Q ss_pred CCCCccCceEeCcCCCCCccccccccc------CCCeeEEeccCCCCCcc------------------------------
Q 047584 695 TCLQTLCNFVVAKDSGSGLRELKSLTH------LERTLKISKLENVKCVG------------------------------ 738 (883)
Q Consensus 695 ~~L~~L~~~~~~~~~~~~~~~l~~L~~------L~~~L~i~~l~~~~~~~------------------------------ 738 (883)
++|+.|... .+...+.....+.++.+ |+ .|.+.+........
T Consensus 174 ~~L~~L~L~-~n~l~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 174 KTLSFFSLA-ANSLYSRVSVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp CSSCCCEEC-CSBSCCCCCCCCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred CccceEECC-CCccccccccchhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 566666221 11111111111122111 33 33332211000000
Q ss_pred --chHhhhcCC--CCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCC-CcCCCcCCCCCeeE
Q 047584 739 --DAMEAQMDG--KKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKF-PTWLGDSLFSNLVT 813 (883)
Q Consensus 739 --~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~ 813 (883)
......+.+ .++|+.|+++.|... ......+..+++|+.|++++|.+..+ |..+. .+++|++
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~ 318 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVF-----------SLNSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQV 318 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCC-----------EECSCCSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCE
T ss_pred cCCCChhhhhccccCCccEEECCCCccc-----------ccChhhhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCE
Confidence 001111112 245666666543111 01123345566777777777766554 33343 2677777
Q ss_pred EEEecCCCCCCCC-CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeecccc
Q 047584 814 LKFENCGICTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 814 L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
|+|++|......| .++.+++|+.|++++| .+..++...+. .+++|+.|+++++
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~-----~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFK-----FLEKLQTLDLRDN 372 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSC-----SCCCCCEEEEETC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhc-----CCCCCCEEECCCC
Confidence 7777775544333 5666777777777766 45555443222 3566666665553
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=3.9e-18 Score=201.40 Aligned_cols=123 Identities=22% Similarity=0.244 Sum_probs=102.7
Q ss_pred CCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCcccc-ccccccCCC
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSL-PESVNKLYN 648 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~ 648 (883)
++++.|.+..+. +..-....+.++++|++|+|++|.++.+ |..++++++|++|+|++|.++.+ |..++++++
T Consensus 32 ~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNP------LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCC------cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 678888776544 3222233566999999999999999987 56789999999999999999988 788999999
Q ss_pred ccEEecCCCCchhhch-hhhcCcCCCCceecCCCCCcc--ccCccCCCCCCCCccC
Q 047584 649 LHSLLLEDCDRLKKLC-ADMGNLIKLHHLKNSNTDSLE--EMPLGIVRLTCLQTLC 701 (883)
Q Consensus 649 L~~L~l~~c~~l~~lp-~~i~~L~~L~~L~l~~~~~~~--~~p~~i~~L~~L~~L~ 701 (883)
|++|++++| .+..+| ..++++++|++|++++|. +. .+|..++++++|++|.
T Consensus 106 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~ 159 (606)
T 3vq2_A 106 LENLVAVET-KLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVD 159 (606)
T ss_dssp CCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEE
T ss_pred CCEEEccCC-ccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEE
Confidence 999999995 555555 679999999999999998 54 5788999999999984
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=7.5e-18 Score=190.33 Aligned_cols=254 Identities=17% Similarity=0.133 Sum_probs=182.6
Q ss_pred cccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCcccccccccc
Q 047584 566 DLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNK 645 (883)
Q Consensus 566 ~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~ 645 (883)
.+.++++|+.|.+..+. +.. . +.+..+++|++|+|++|.++.+| ++.+++|++|++++|.++.+| +++
T Consensus 37 ~~~~l~~L~~L~Ls~n~------l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~ 104 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS------ITD-M-TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTP 104 (457)
T ss_dssp EHHHHTTCCEEECCSSC------CCC-C-TTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred ChhHcCCCCEEEccCCC------ccc-C-hhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCC
Confidence 34567888888876543 221 2 35778999999999999999986 899999999999999999986 899
Q ss_pred CCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCe
Q 047584 646 LYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERT 725 (883)
Q Consensus 646 l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 725 (883)
+++|++|++++| .+..+| ++.+++|++|++++|. +..+| ++.+++|++|......... .+ .+..+++|+ .
T Consensus 105 l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~--~~-~~~~l~~L~-~ 174 (457)
T 3bz5_A 105 LTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT--KL-DVTPQTQLT-T 174 (457)
T ss_dssp CTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC--CC-CCTTCTTCC-E
T ss_pred CCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc--cc-ccccCCcCC-E
Confidence 999999999995 566676 8999999999999998 77764 7788888877332221111 12 466777777 7
Q ss_pred eEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCc
Q 047584 726 LKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGD 805 (883)
Q Consensus 726 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 805 (883)
|.+.+..-. . ++ +..+++|+.|++++|.... + .+..+++|+.|++++|.+..+| +.
T Consensus 175 L~ls~n~l~-~----l~--l~~l~~L~~L~l~~N~l~~-------------~-~l~~l~~L~~L~Ls~N~l~~ip--~~- 230 (457)
T 3bz5_A 175 LDCSFNKIT-E----LD--VSQNKLLNRLNCDTNNITK-------------L-DLNQNIQLTFLDCSSNKLTEID--VT- 230 (457)
T ss_dssp EECCSSCCC-C----CC--CTTCTTCCEEECCSSCCSC-------------C-CCTTCTTCSEEECCSSCCSCCC--CT-
T ss_pred EECCCCccc-e----ec--cccCCCCCEEECcCCcCCe-------------e-ccccCCCCCEEECcCCcccccC--cc-
Confidence 777643211 1 12 7788999999998753221 1 3667799999999999999988 43
Q ss_pred CCCCCeeEEEEecCCCCCCCCCCCCcCcc----------cceeccCcccceecCCCccCCCCCCCCCCcceeeccccccc
Q 047584 806 SLFSNLVTLKFENCGICTALPSVGQLPSL----------KHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDMEEW 875 (883)
Q Consensus 806 ~~l~~L~~L~L~~~~~~~~l~~l~~lp~L----------~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~L 875 (883)
.+++|+.|++++|.... +| ++.+++| +.|++++|..++.+|. ..+++|+.|++++|+.+
T Consensus 231 -~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--------~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 231 -PLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--------EGCRKIKELDVTHNTQL 299 (457)
T ss_dssp -TCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--------TTCTTCCCCCCTTCTTC
T ss_pred -ccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCCCCCEEECCCCccCCcccc--------cccccCCEEECCCCccc
Confidence 38999999999996544 33 3445544 5556666655555542 23566666666666543
Q ss_pred c
Q 047584 876 E 876 (883)
Q Consensus 876 ~ 876 (883)
.
T Consensus 300 ~ 300 (457)
T 3bz5_A 300 Y 300 (457)
T ss_dssp C
T ss_pred c
Confidence 3
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=5.4e-19 Score=207.63 Aligned_cols=260 Identities=19% Similarity=0.127 Sum_probs=173.8
Q ss_pred CCCCceEeeeccccCCCCCCCCCCchhhhc-CCCceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCcccccc-cccc
Q 047584 569 DIQHLRTFLPVMLTNSGPCYLAPSILPKLL-KLQRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLPE-SVNK 645 (883)
Q Consensus 569 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~-~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~ 645 (883)
.+++++.+.+.++. ...+++.++ ++++|++|+|++|.+..+|. .++.+++|++|+|++|.++.+|+ .+++
T Consensus 49 ~l~~l~~l~l~~~~-------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCCC-------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 45677777665433 133445544 79999999999999998764 89999999999999999998876 5699
Q ss_pred CCCccEEecCCCCchhhchhh-hcCcCCCCceecCCCCCccccC-ccCCCCCCCCccCceEeCcCCCCCcccccccccCC
Q 047584 646 LYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLKNSNTDSLEEMP-LGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLE 723 (883)
Q Consensus 646 l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 723 (883)
+++|++|+|++| .+..+|.. ++.+++|++|++++|. +..+| ..++.+++|++|.... +...+. .+..+++|+
T Consensus 122 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~---~~~~l~~L~ 195 (597)
T 3oja_B 122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSS-NRLTHV---DLSLIPSLF 195 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTT-SCCSBC---CGGGCTTCS
T ss_pred CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcC-CCCCCc---Chhhhhhhh
Confidence 999999999995 67788876 5899999999999998 56555 4688999998883322 112222 244555565
Q ss_pred CeeEEeccCCCCCccchHhhhcCCCC---------------------CCCceEEEeccCCCCCCCcchhhHHhhhcCCCC
Q 047584 724 RTLKISKLENVKCVGDAMEAQMDGKK---------------------NLKELSLNWTCSTDGSSSREAETEMGVLDVLKP 782 (883)
Q Consensus 724 ~~L~i~~l~~~~~~~~~~~~~l~~~~---------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 782 (883)
.|.+.+..- ..+.... +|+.|++++|... ....+..
T Consensus 196 -~L~l~~n~l---------~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~-------------~~~~l~~ 252 (597)
T 3oja_B 196 -HANVSYNLL---------STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-------------DTAWLLN 252 (597)
T ss_dssp -EEECCSSCC---------SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCC-------------CCGGGGG
T ss_pred -hhhcccCcc---------ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCC-------------CChhhcc
Confidence 555432110 0112223 4455555443111 1133455
Q ss_pred CCCcceEEEEecCCCCC-CcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeccCcccceecCCCccCCCCCCCC
Q 047584 783 HANLEQFCIKGYGGMKF-PTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPF 861 (883)
Q Consensus 783 ~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~ 861 (883)
+++|+.|++++|.+..+ |..+.. +++|+.|+|++|......+.++.+|+|+.|+|++| .+..+|..+.. +
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~------l 323 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVK--MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQ------F 323 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTT--CSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHH------H
T ss_pred CCCCCEEECCCCccCCCCHHHhcC--ccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCccccc------C
Confidence 67777888877776654 555543 77788888887754432224556778888888776 45566655433 7
Q ss_pred CCcceeeccccc
Q 047584 862 PYLETLRFEDME 873 (883)
Q Consensus 862 p~L~~L~l~~~~ 873 (883)
++|+.|+|++++
T Consensus 324 ~~L~~L~L~~N~ 335 (597)
T 3oja_B 324 DRLENLYLDHNS 335 (597)
T ss_dssp TTCSEEECCSSC
T ss_pred CCCCEEECCCCC
Confidence 788888777653
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=3.8e-18 Score=197.45 Aligned_cols=127 Identities=14% Similarity=0.109 Sum_probs=92.4
Q ss_pred cCCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCC
Q 047584 544 FSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDL 623 (883)
Q Consensus 544 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l 623 (883)
.+..+++|.+..+...... ...+..+++|+.|.+..+. +..-.+..+.++++|++|+|++|.++.+|.. .+
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l 89 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELW-TSDILSLSKLRILIISHNR------IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PT 89 (520)
T ss_dssp CCTTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSC------CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CC
T ss_pred ccccccEEECCCCcccccC-hhhccccccccEEecCCCc------cCCcChHHhhcccCCCEEecCCCceeecCcc--cc
Confidence 3467888888766543321 1346778889988876554 3333345666899999999999999988876 88
Q ss_pred CcccEEeccCCCccc--cccccccCCCccEEecCCCCchhhchhhhcCcCCC--CceecCCCC
Q 047584 624 RYLRYLNLSGTVIRS--LPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKL--HHLKNSNTD 682 (883)
Q Consensus 624 ~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L--~~L~l~~~~ 682 (883)
++|++|+|++|.++. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECT
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccc
Confidence 999999999999886 57889999999999998854 333 345556666 777776665
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.76 E-value=1.4e-18 Score=205.13 Aligned_cols=295 Identities=15% Similarity=0.151 Sum_probs=186.6
Q ss_pred CeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCc-CccccCCCc
Q 047584 547 NLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPEL-PDSVGDLRY 625 (883)
Q Consensus 547 ~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~ 625 (883)
.++.+.+..+...... ...+..+++|+.|.+..+. +. .++..+.++++|++|++++|.+..+ |..+..+++
T Consensus 255 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~------l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 255 SVESINLQKHYFFNIS-SNTFHCFSGLQELDLTATH------LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp EEEEEECTTCCCSSCC-TTTTTTCTTCSEEECTTSC------CS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred ceeEEEeecCccCccC-HHHhccccCCCEEeccCCc------cC-CCChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence 4555555443332211 1225567777777765543 21 3444556778888888888887766 456778888
Q ss_pred ccEEeccCCCcc-cccc-ccccCCCccEEecCCCCchhhc---hhhhcCcCCCCceecCCCCCccccCccCCCCCCCCcc
Q 047584 626 LRYLNLSGTVIR-SLPE-SVNKLYNLHSLLLEDCDRLKKL---CADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTL 700 (883)
Q Consensus 626 L~~L~L~~~~i~-~lp~-~i~~l~~L~~L~l~~c~~l~~l---p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 700 (883)
|++|++++|.+. .+|. .+.++++|++|++++|. +..+ |..+..+++|++|++++|......|..++.+++|++|
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 888888888776 5554 37788888888888753 3333 5567788888888888877333345567777777777
Q ss_pred CceEeCcCCCCC-cccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcC
Q 047584 701 CNFVVAKDSGSG-LRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDV 779 (883)
Q Consensus 701 ~~~~~~~~~~~~-~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 779 (883)
...... ..+.. ...+.++++|+ .|.+.+.. .....+..+..+++|+.|++++|.... ........
T Consensus 406 ~l~~n~-l~~~~~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~ 471 (606)
T 3t6q_A 406 DLAFTR-LKVKDAQSPFQNLHLLK-VLNLSHSL----LDISSEQLFDGLPALQHLNLQGNHFPK--------GNIQKTNS 471 (606)
T ss_dssp ECTTCC-EECCTTCCTTTTCTTCC-EEECTTCC----CBTTCTTTTTTCTTCCEEECTTCBCGG--------GEECSSCG
T ss_pred ECCCCc-CCCcccchhhhCcccCC-EEECCCCc----cCCcCHHHHhCCCCCCEEECCCCCCCc--------cccccchh
Confidence 322111 11111 12255666676 66665432 122234456778888888887642210 00011234
Q ss_pred CCCCCCcceEEEEecCCCCC-CcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCcccceecCCCccCCCC
Q 047584 780 LKPHANLEQFCIKGYGGMKF-PTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDA 857 (883)
Q Consensus 780 l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~ 857 (883)
+..+++|+.|++++|.+..+ |.++.. +++|+.|+|++|......| .+..+++| +|+|++| .+..++....+
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~--- 544 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSIDQHAFTS--LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLP--- 544 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHH---
T ss_pred hccCCCccEEECCCCccCccChhhhcc--ccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcc---
Confidence 56678899999998887765 555643 8899999999987655554 77888888 8999887 45555444322
Q ss_pred CCCCCCcceeeccccc
Q 047584 858 SIPFPYLETLRFEDME 873 (883)
Q Consensus 858 ~~~~p~L~~L~l~~~~ 873 (883)
.+++|+.|+++++|
T Consensus 545 --~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 545 --ILSQQRTINLRQNP 558 (606)
T ss_dssp --HHHTSSEEECTTCC
T ss_pred --cCCCCCEEeCCCCC
Confidence 38899999999876
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.76 E-value=7e-18 Score=199.22 Aligned_cols=246 Identities=17% Similarity=0.145 Sum_probs=149.1
Q ss_pred ceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCC
Q 047584 602 RLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSN 680 (883)
Q Consensus 602 ~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~ 680 (883)
.|+.|++++|.+..++. .++.+++|++|++++|.++.+|..+.++++|++|++++|......|..+..+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 67888888888877754 47888889999999888888888888888999999988644444466788888888888888
Q ss_pred CCCccccCcc-CCCCCCCCccCceEeCcCCCCC--cccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEE
Q 047584 681 TDSLEEMPLG-IVRLTCLQTLCNFVVAKDSGSG--LRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLN 757 (883)
Q Consensus 681 ~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~--~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 757 (883)
|.....+|.. ++.+++|++|..... ...... ...+.++++|+ .|.+.+.. .....+..+..+++|+.|+++
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQ-SLNLSYNE----PLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCC-EEECCSCS----CEEECTTTTTTCTTCSEEECT
T ss_pred CCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCC-EEECCCCc----CCcCCHHHhcCCccCCeEECC
Confidence 8744456654 777777777732211 111111 23456666776 66665422 122234456677778888776
Q ss_pred eccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCC-CcCCCcCCCCCeeEEEEecCCCCCC-C---CCCCCcC
Q 047584 758 WTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKF-PTWLGDSLFSNLVTLKFENCGICTA-L---PSVGQLP 832 (883)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~-l---~~l~~lp 832 (883)
+|..... .....+..+++|+.|++++|..... |.++.. +++|++|+|++|...+. + ..++.++
T Consensus 409 ~n~l~~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 476 (606)
T 3t6q_A 409 FTRLKVK----------DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--LPALQHLNLQGNHFPKGNIQKTNSLQTLG 476 (606)
T ss_dssp TCCEECC----------TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT--CTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred CCcCCCc----------ccchhhhCcccCCEEECCCCccCCcCHHHHhC--CCCCCEEECCCCCCCccccccchhhccCC
Confidence 6421100 0111244456666666666665543 344432 56666666666654321 1 1355566
Q ss_pred cccceeccCcccceecC-CCccCCCCCCCCCCcceeecccc
Q 047584 833 SLKHLVVCGMSSVRRLD-PEFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 833 ~L~~L~L~~~~~l~~i~-~~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
+|++|+|++| .+..++ ..+. .+++|+.|+++++
T Consensus 477 ~L~~L~Ls~n-~l~~~~~~~~~------~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 477 RLEILVLSFC-DLSSIDQHAFT------SLKMMNHVDLSHN 510 (606)
T ss_dssp TCCEEECTTS-CCCEECTTTTT------TCTTCCEEECCSS
T ss_pred CccEEECCCC-ccCccChhhhc------cccCCCEEECCCC
Confidence 6666666665 333332 2222 2566666665554
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=1.1e-17 Score=195.31 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=73.8
Q ss_pred CCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCC
Q 047584 545 SRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLR 624 (883)
Q Consensus 545 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~ 624 (883)
+..+++|.+..+...... ...+..+++|+.|.+..+. +..-.+..+.++++|++|+|++|.++.+|.. .++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 121 (562)
T 3a79_B 51 PPRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNR------IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMA 121 (562)
T ss_dssp CTTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCC------CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCT
T ss_pred CCCcCEEECCCCCccccC-hhhhccCCCccEEECCCCC------CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccc
Confidence 356667666655433221 1345566777777655443 2222233344677777777777777777665 677
Q ss_pred cccEEeccCCCccccc--cccccCCCccEEecCCCCchhhchhhhcCcCCC--CceecCCCC
Q 047584 625 YLRYLNLSGTVIRSLP--ESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKL--HHLKNSNTD 682 (883)
Q Consensus 625 ~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L--~~L~l~~~~ 682 (883)
+|++|++++|.++.+| ..++++++|++|++++| .+.. ..+..+++| ++|++++|.
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~--~~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQ--LDLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCT--TTTGGGTTSCEEEEEEEESS
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEecCCC-cccc--CchhhhhhceeeEEEeeccc
Confidence 7777777777777653 56777777777777774 3332 223344444 666665554
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=5.9e-18 Score=191.86 Aligned_cols=221 Identities=25% Similarity=0.280 Sum_probs=159.8
Q ss_pred CceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCccccc-cccccCCCccEEecCCCCchhhchhh-hcCcCCCCcee
Q 047584 601 QRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSLP-ESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLK 677 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~ 677 (883)
++|++|+|++|.+..+ |..+.++++|++|+|++|.++.++ ..+.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 5789999999998877 567899999999999999998875 67888999999999984 56677654 78899999999
Q ss_pred cCCCCCccccCc-cCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEE
Q 047584 678 NSNTDSLEEMPL-GIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSL 756 (883)
Q Consensus 678 l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 756 (883)
+++|. +..+|. .+.++++|++|.... ...+. ......+.++++|+.|++
T Consensus 154 L~~N~-l~~~~~~~~~~l~~L~~L~l~~--------------~~~l~---------------~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 154 LRNNP-IESIPSYAFNRVPSLMRLDLGE--------------LKKLE---------------YISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECCC--------------CTTCC---------------EECTTTTTTCTTCCEEEC
T ss_pred CCCCC-cceeCHhHHhcCCcccEEeCCC--------------CCCcc---------------ccChhhccCCCCCCEEEC
Confidence 99987 666664 466677776662111 11111 001123566778888888
Q ss_pred EeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCC-CcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcc
Q 047584 757 NWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKF-PTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSL 834 (883)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L 834 (883)
++|... .+..+..+++|+.|++++|.+..+ |.++.. +++|+.|+|++|......+ .+..+++|
T Consensus 204 ~~n~l~-------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 204 GMCNIK-------------DMPNLTPLVGLEELEMSGNHFPEIRPGSFHG--LSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp TTSCCS-------------SCCCCTTCTTCCEEECTTSCCSEECGGGGTT--CTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCccc-------------ccccccccccccEEECcCCcCcccCcccccC--ccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 765222 123466678888888888887765 455543 7888888888886554444 67788888
Q ss_pred cceeccCcccceecCCCccCCCCCCCCCCcceeeccccc
Q 047584 835 KHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 835 ~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
+.|+|++| .+..++...+. .+++|+.|+|+++|
T Consensus 269 ~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 269 VELNLAHN-NLSSLPHDLFT-----PLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECCSS-CCSCCCTTSST-----TCTTCCEEECCSSC
T ss_pred CEEECCCC-cCCccChHHhc-----cccCCCEEEccCCC
Confidence 88888877 66677655443 48888888888865
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=1e-17 Score=195.23 Aligned_cols=150 Identities=18% Similarity=0.263 Sum_probs=108.3
Q ss_pred cCCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCcc-ccC
Q 047584 544 FSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDS-VGD 622 (883)
Q Consensus 544 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~-i~~ 622 (883)
.+..+++|.+..+...... ...+..+++|+.|.+..+. +....+..+.++++|++|+|++|.+..+|.. +++
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSR------INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp CCTTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred CCCCccEEECcCCccCccC-hhhhhcCCcccEEECCCCC------cCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 3467888888766543321 2356778888888876554 3322234456888999999999998887655 889
Q ss_pred CCcccEEeccCCCccc--cccccccCCCccEEecCCCCchhhch-hhhcCcCCCCceecCCCCCccccCccCCCCCCCCc
Q 047584 623 LRYLRYLNLSGTVIRS--LPESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQT 699 (883)
Q Consensus 623 l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~c~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 699 (883)
+++|++|++++|.++. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.+++|++
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 9999999999998885 46778899999999998876567776 46888888888888888733345666665554444
Q ss_pred c
Q 047584 700 L 700 (883)
Q Consensus 700 L 700 (883)
|
T Consensus 177 L 177 (549)
T 2z81_A 177 L 177 (549)
T ss_dssp E
T ss_pred E
Confidence 3
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=7.8e-18 Score=182.52 Aligned_cols=246 Identities=16% Similarity=0.174 Sum_probs=183.6
Q ss_pred CceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCcccc-ccccccCCCccEEecCCCCchhhchhhhcCcCCCCceec
Q 047584 601 QRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKN 678 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l 678 (883)
+.|++|+|++|.++.++. .++++++|++|+|++|.++.+ |..+.++++|++|++++ +.+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC-CcCCccChhhc--ccccEEEC
Confidence 679999999999998865 789999999999999999988 78899999999999999 46778887665 89999999
Q ss_pred CCCCCccccCc-cCCCCCCCCccCceEeCcC-CCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEE
Q 047584 679 SNTDSLEEMPL-GIVRLTCLQTLCNFVVAKD-SGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSL 756 (883)
Q Consensus 679 ~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~-~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 756 (883)
++|. +..++. .++++++|++|........ .+.....+.++++|+ .|.+.+..-.. ++..+ .++|+.|++
T Consensus 129 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~~n~l~~-----l~~~~--~~~L~~L~l 199 (330)
T 1xku_A 129 HENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS-YIRIADTNITT-----IPQGL--PPSLTELHL 199 (330)
T ss_dssp CSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC-EEECCSSCCCS-----CCSSC--CTTCSEEEC
T ss_pred CCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC-EEECCCCcccc-----CCccc--cccCCEEEC
Confidence 9998 666654 4788888888843221111 123345567788887 77776432111 12222 278999999
Q ss_pred EeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCc-CCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcc
Q 047584 757 NWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPT-WLGDSLFSNLVTLKFENCGICTALP-SVGQLPSL 834 (883)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L 834 (883)
++|.... .....+..+++|+.|++++|.+..++. ++.. +++|+.|+|++|... .+| .+..+++|
T Consensus 200 ~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 200 DGNKITK-----------VDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--TPHLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp TTSCCCE-----------ECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--STTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred CCCcCCc-----------cCHHHhcCCCCCCEEECCCCcCceeChhhccC--CCCCCEEECCCCcCc-cCChhhccCCCc
Confidence 8753221 122446677899999999999887654 5543 899999999999655 565 78999999
Q ss_pred cceeccCcccceecCCCccCC-CCCCCCCCcceeeccccc
Q 047584 835 KHLVVCGMSSVRRLDPEFYGK-DASIPFPYLETLRFEDME 873 (883)
Q Consensus 835 ~~L~L~~~~~l~~i~~~~~~~-~~~~~~p~L~~L~l~~~~ 873 (883)
++|+|++| .++.++...+.. .....+++|+.|++.+.|
T Consensus 266 ~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 266 QVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 99999988 677777655432 112346899999999987
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=2.7e-18 Score=184.07 Aligned_cols=198 Identities=19% Similarity=0.160 Sum_probs=124.7
Q ss_pred CceeEEeeCCCCCCCcCcc-ccCCCcccEEeccCCCcccc---ccccccCCCccEEecCCCCchhhchhhhcCcCCCCce
Q 047584 601 QRLRVFSLRGYCIPELPDS-VGDLRYLRYLNLSGTVIRSL---PESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHL 676 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L 676 (883)
++|++|+|++|.++.+|.. +.++++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEE
Confidence 5789999999999888765 68899999999999988865 677778999999999984 567788888899999999
Q ss_pred ecCCCCCccccCc--cCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCce
Q 047584 677 KNSNTDSLEEMPL--GIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKEL 754 (883)
Q Consensus 677 ~l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 754 (883)
++++|. +..+|. .+..+++|++|. .+.+. .....+..+..+++|+.|
T Consensus 107 ~l~~n~-l~~~~~~~~~~~l~~L~~L~---l~~n~---------------------------l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 107 DFQHSN-LKQMSEFSVFLSLRNLIYLD---ISHTH---------------------------TRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp ECTTSE-EESSTTTTTTTTCTTCCEEE---CTTSC---------------------------CEECSTTTTTTCTTCCEE
T ss_pred ECCCCc-ccccccchhhhhccCCCEEE---CCCCc---------------------------CCccchhhcccCcCCCEE
Confidence 999987 666653 466666666662 21111 000111224445555555
Q ss_pred EEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCC-CcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcC
Q 047584 755 SLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKF-PTWLGDSLFSNLVTLKFENCGICTALP-SVGQLP 832 (883)
Q Consensus 755 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp 832 (883)
++++|... .......+..+++|+.|++++|.+..+ |.++.. +++|+.|+|++|......+ .+..++
T Consensus 156 ~l~~n~l~----------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 156 KMAGNSFQ----------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS--LSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp ECTTCEEG----------GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred ECCCCccc----------cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC--CCCCCEEECCCCccCccChhhccCcc
Confidence 55442100 001223344555666666666555544 344432 5666666666664332222 355566
Q ss_pred cccceeccCc
Q 047584 833 SLKHLVVCGM 842 (883)
Q Consensus 833 ~L~~L~L~~~ 842 (883)
+|+.|+|++|
T Consensus 224 ~L~~L~L~~N 233 (306)
T 2z66_A 224 SLQVLDYSLN 233 (306)
T ss_dssp TCCEEECTTS
T ss_pred cCCEeECCCC
Confidence 6666666655
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=9.1e-18 Score=196.73 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=108.9
Q ss_pred ccCCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcC-cccc
Q 047584 543 CFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELP-DSVG 621 (883)
Q Consensus 543 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp-~~i~ 621 (883)
..+..+++|.+..+...... ...+..+++|++|.+..+. +..-.+..+.++++|++|+|++|.+..+| ..++
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SSCSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CccccccEEEccCCccCccC-hhHhhCCCCceEEECCCCc------CCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 34567888888766544322 2356778889988876543 22222233558899999999999988875 6789
Q ss_pred CCCcccEEeccCCCcccccc-ccccCCCccEEecCCCCchh-hchhhhcCcCCCCceecCCCCCcccc-CccCCCCCCC
Q 047584 622 DLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLK-KLCADMGNLIKLHHLKNSNTDSLEEM-PLGIVRLTCL 697 (883)
Q Consensus 622 ~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L 697 (883)
++.+|++|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|. +..+ |..++.+++|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM 175 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTC
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhcc
Confidence 99999999999999998876 68899999999999854332 468889999999999999987 5554 3456666666
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=9.8e-18 Score=189.38 Aligned_cols=221 Identities=24% Similarity=0.281 Sum_probs=155.0
Q ss_pred CceeEEeeCCCCCCCcC-ccccCCCcccEEeccCCCccccc-cccccCCCccEEecCCCCchhhchh-hhcCcCCCCcee
Q 047584 601 QRLRVFSLRGYCIPELP-DSVGDLRYLRYLNLSGTVIRSLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLK 677 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~ 677 (883)
+++++|+|++|.+..++ ..+.++++|++|+|++|.++.++ ..+.++++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 67888999999988775 67888999999999999998875 57888999999999984 6667765 588899999999
Q ss_pred cCCCCCccccCc-cCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEE
Q 047584 678 NSNTDSLEEMPL-GIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSL 756 (883)
Q Consensus 678 l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 756 (883)
+++|. +..+|. .+..+++|++|..... ..+. ......+.++++|+.|++
T Consensus 143 L~~N~-i~~~~~~~~~~l~~L~~L~l~~~--------------~~l~---------------~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 143 LRNNP-IESIPSYAFNRIPSLRRLDLGEL--------------KRLS---------------YISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECCCC--------------TTCC---------------EECTTTTTTCSSCCEEEC
T ss_pred CCCCc-ccccCHHHhhhCcccCEeCCCCC--------------CCcc---------------eeCcchhhcccccCeecC
Confidence 99887 666654 4666666666622110 0111 011123566777888888
Q ss_pred EeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCC-CcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcc
Q 047584 757 NWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKF-PTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSL 834 (883)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L 834 (883)
++|... .+..+..+++|+.|+|++|.+..+ |..+.. +++|+.|+|++|......+ .+..+++|
T Consensus 193 ~~n~l~-------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 193 AMCNLR-------------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQG--LMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp TTSCCS-------------SCCCCTTCSSCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred CCCcCc-------------cccccCCCcccCEEECCCCccCccChhhhcc--CccCCEEECCCCceeEEChhhhcCCCCC
Confidence 664221 123456677888888888877765 445543 7888888888886544333 67778888
Q ss_pred cceeccCcccceecCCCccCCCCCCCCCCcceeeccccc
Q 047584 835 KHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 835 ~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
+.|+|++| .+..++...+. .+++|+.|+|+++|
T Consensus 258 ~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 258 VEINLAHN-NLTLLPHDLFT-----PLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTS-CCCCCCTTTTS-----SCTTCCEEECCSSC
T ss_pred CEEECCCC-CCCccChhHhc-----cccCCCEEEcCCCC
Confidence 88888877 56666655443 47888888888765
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=6.4e-18 Score=195.54 Aligned_cols=119 Identities=22% Similarity=0.235 Sum_probs=95.9
Q ss_pred CCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCccccccccccCCCc
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNL 649 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L 649 (883)
++++.|.+..+. +..-.+..+.++++|++|+|++|.++.+ |..++++++|++|+|++|.++.+|.. .+++|
T Consensus 21 ~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNY------ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCSSC------CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred ccccEEECCCCc------ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence 788888776554 3333345677999999999999999987 77899999999999999999999987 89999
Q ss_pred cEEecCCCCchh-hchhhhcCcCCCCceecCCCCCccccCccCCCCCCC--Ccc
Q 047584 650 HSLLLEDCDRLK-KLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCL--QTL 700 (883)
Q Consensus 650 ~~L~l~~c~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L 700 (883)
++|++++|.... .+|..++++++|++|++++|. +.. ..++.+++| ++|
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKV 143 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEE
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEE
Confidence 999999964333 367899999999999999987 443 245566666 555
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=188.16 Aligned_cols=249 Identities=16% Similarity=0.146 Sum_probs=155.6
Q ss_pred CceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCccccc-cccccCCCccEEecCCCCchhhchhh-hcCcCCCCcee
Q 047584 601 QRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLP-ESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLK 677 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~ 677 (883)
++|++|++++|.++.+|. .+.++++|++|++++|.++.++ ..+.++++|++|++++| .+..+|.. +..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence 467788888887777755 6777788888888887777664 45777788888888773 55566654 67778888888
Q ss_pred cCCCCCccccCc--cCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceE
Q 047584 678 NSNTDSLEEMPL--GIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELS 755 (883)
Q Consensus 678 l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 755 (883)
+++|. +..+|. .++.+++|++|...............+.++++|+ .|.+.+.. .....+..+..+++|+.|+
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE-ELEIDASD----LQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETT----CCEECTTTTTTCSEEEEEE
T ss_pred CCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC-EEECCCCC----cCccCHHHHhccccCCeec
Confidence 87776 666665 5667777777743332222222223455566665 56665432 1122345567778888888
Q ss_pred EEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcC-C-CcCCCCCeeEEEEecCCCCC----CCC-CC
Q 047584 756 LNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTW-L-GDSLFSNLVTLKFENCGICT----ALP-SV 828 (883)
Q Consensus 756 l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~-~~~~l~~L~~L~L~~~~~~~----~l~-~l 828 (883)
+++|... ...... +..+++|+.|++++|.+..++.. + .....+.++.++|+++.... .+| .+
T Consensus 205 l~~n~l~--------~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 205 LHMKQHI--------LLLEIF---VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp EECSCST--------THHHHH---HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred CCCCccc--------cchhhh---hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence 8775221 011111 12346788888888877665421 1 11125667778887775432 133 46
Q ss_pred CCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccccc
Q 047584 829 GQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 829 ~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
+.+++|+.|+|++| .++.+|...++ .+++|++|+++++|
T Consensus 274 ~~l~~L~~L~Ls~N-~l~~i~~~~~~-----~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 274 NQISGLLELEFSRN-QLKSVPDGIFD-----RLTSLQKIWLHTNP 312 (353)
T ss_dssp HTCTTCCEEECCSS-CCCCCCTTTTT-----TCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCC-CCCccCHHHHh-----cCCCCCEEEeeCCC
Confidence 67788888888877 56677765433 37888888888764
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=201.73 Aligned_cols=282 Identities=15% Similarity=0.155 Sum_probs=192.2
Q ss_pred CCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCC-CCCc-CccccCCCcccEEeccCCCcccc-cccccc
Q 047584 569 DIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYC-IPEL-PDSVGDLRYLRYLNLSGTVIRSL-PESVNK 645 (883)
Q Consensus 569 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~-~~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~ 645 (883)
-.++++.|.+..+. +..-.+..+.++++|++|+|++|. +..+ |..++++++|++|+|++|.++.+ |..+++
T Consensus 22 lp~~l~~LdLs~N~------i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNY------IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEESCC------CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEECCCCc------CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 45788888876544 333334556699999999999995 4566 77899999999999999999977 789999
Q ss_pred CCCccEEecCCCCchhhchhh--hcCcCCCCceecCCCCCccccC--ccCCCCCCCCccCceEeCcCCCCCccccccc--
Q 047584 646 LYNLHSLLLEDCDRLKKLCAD--MGNLIKLHHLKNSNTDSLEEMP--LGIVRLTCLQTLCNFVVAKDSGSGLRELKSL-- 719 (883)
Q Consensus 646 l~~L~~L~l~~c~~l~~lp~~--i~~L~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L-- 719 (883)
+++|++|+|++|.....+|.. +.++++|++|++++|. +..++ ..++++++|++|. +..+...+.....+..+
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~-Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSID-FSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEE-EESSCCCCCCSGGGHHHHH
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEE-CCCCcCCeeCHHHcccccC
Confidence 999999999997554556665 8999999999999998 55543 4689999999993 33333333334455544
Q ss_pred ccCCCeeEEeccCCCCCccchHhhhcCCCC------CCCceEEEeccCCCCCCCcch-----------------------
Q 047584 720 THLERTLKISKLENVKCVGDAMEAQMDGKK------NLKELSLNWTCSTDGSSSREA----------------------- 770 (883)
Q Consensus 720 ~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~----------------------- 770 (883)
++|+ .|.+....... ..+..+..+. .|+.|++++|...........
T Consensus 174 ~~L~-~L~L~~n~l~~----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 174 KTLS-FFSLAANSLYS----RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp CSSC-CCEECCSBSCC----CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred Cccc-eEECCCCcccc----ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 5666 56665332111 1112222333 488898877522110000000
Q ss_pred --hhHHhhhcCCCC--CCCcceEEEEecCCCCC-CcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCccc
Q 047584 771 --ETEMGVLDVLKP--HANLEQFCIKGYGGMKF-PTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMSS 844 (883)
Q Consensus 771 --~~~~~~l~~l~~--~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~ 844 (883)
.........+.. +++|+.|++++|.+..+ |.++. .+++|+.|+|++|......| .+..+++|++|+|++| .
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~ 325 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-L 325 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-C
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-C
Confidence 000000111222 36899999999987765 45554 48999999999997665555 7889999999999988 4
Q ss_pred ceec-CCCccCCCCCCCCCCcceeecccc
Q 047584 845 VRRL-DPEFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 845 l~~i-~~~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
+..+ +..|. .+++|+.|+++++
T Consensus 326 l~~~~~~~~~------~l~~L~~L~L~~N 348 (844)
T 3j0a_A 326 LGELYSSNFY------GLPKVAYIDLQKN 348 (844)
T ss_dssp CSCCCSCSCS------SCTTCCEEECCSC
T ss_pred CCccCHHHhc------CCCCCCEEECCCC
Confidence 5555 33343 4999999999875
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=4.6e-17 Score=176.43 Aligned_cols=264 Identities=15% Similarity=0.153 Sum_probs=181.1
Q ss_pred CCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCccccccccccCCCc
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNL 649 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L 649 (883)
+.++.|.+..+. +..-....+.++++|++|+|++|.+..+ |..++++++|++|++++|.++.+|..+. ++|
T Consensus 52 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNK------ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL 123 (330)
T ss_dssp TTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred CCCeEEECCCCc------CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence 567777665443 2222223456899999999999999887 7889999999999999999999998775 799
Q ss_pred cEEecCCCCchhhch-hhhcCcCCCCceecCCCCCcc---ccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCe
Q 047584 650 HSLLLEDCDRLKKLC-ADMGNLIKLHHLKNSNTDSLE---EMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERT 725 (883)
Q Consensus 650 ~~L~l~~c~~l~~lp-~~i~~L~~L~~L~l~~~~~~~---~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 725 (883)
++|++++| .+..+| ..+..+++|++|++++|. +. ..|..++.+++|++|.. ..+....+.. .-.++|+ .
T Consensus 124 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l---~~n~l~~l~~-~~~~~L~-~ 196 (330)
T 1xku_A 124 QELRVHEN-EITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRI---ADTNITTIPQ-GLPPSLT-E 196 (330)
T ss_dssp CEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEEC---CSSCCCSCCS-SCCTTCS-E
T ss_pred cEEECCCC-cccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEEC---CCCccccCCc-cccccCC-E
Confidence 99999995 455554 458999999999999987 43 34556777888877732 2221111111 0114565 5
Q ss_pred eEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCc
Q 047584 726 LKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGD 805 (883)
Q Consensus 726 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 805 (883)
|.+.+.. .....+..+..+++|+.|++++|.... .....+..+++|+.|++++|.+..+|.++..
T Consensus 197 L~l~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~ 261 (330)
T 1xku_A 197 LHLDGNK----ITKVDAASLKGLNNLAKLGLSFNSISA-----------VDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261 (330)
T ss_dssp EECTTSC----CCEECTGGGTTCTTCCEEECCSSCCCE-----------ECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred EECCCCc----CCccCHHHhcCCCCCCEEECCCCcCce-----------eChhhccCCCCCCEEECCCCcCccCChhhcc
Confidence 6655422 222234568889999999998863221 1122455678999999999999999998865
Q ss_pred CCCCCeeEEEEecCCCCCCCC--CCC------CcCcccceeccCcccce-ecCCCccCCCCCCCCCCcceeecccc
Q 047584 806 SLFSNLVTLKFENCGICTALP--SVG------QLPSLKHLVVCGMSSVR-RLDPEFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 806 ~~l~~L~~L~L~~~~~~~~l~--~l~------~lp~L~~L~L~~~~~l~-~i~~~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
+++|+.|+|++|... .++ .+. ..++|+.|++++|+... .++...+ ..+++|+.++|+++
T Consensus 262 --l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f-----~~~~~l~~l~L~~N 329 (330)
T 1xku_A 262 --HKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-----RCVYVRAAVQLGNY 329 (330)
T ss_dssp --CSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG-----TTCCCGGGEEC---
T ss_pred --CCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCcccccccCcccc-----ccccceeEEEeccc
Confidence 899999999999654 333 222 35889999999886321 1322222 23788899888775
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=3.3e-17 Score=177.70 Aligned_cols=245 Identities=16% Similarity=0.151 Sum_probs=131.7
Q ss_pred hhcCCCceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchh-hhcCcCCC
Q 047584 596 KLLKLQRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKL 673 (883)
Q Consensus 596 ~l~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~-~i~~L~~L 673 (883)
.+.++++|++|+|++|.++.+ |..++++++|++|++++|.++.+|..+. ++|++|++++| .+..+|. .+..+++|
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSC
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccC
Confidence 345677777777777777765 5567777777777777777777776655 67777777773 4555554 36777777
Q ss_pred CceecCCCCCcc---ccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCC
Q 047584 674 HHLKNSNTDSLE---EMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKN 750 (883)
Q Consensus 674 ~~L~l~~~~~~~---~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~ 750 (883)
++|++++|. +. ..|..++.+ +|++|..... ..... ...+ .++|+ .|.+.+.. .....+..+..+++
T Consensus 150 ~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l-~~~~--~~~L~-~L~l~~n~----i~~~~~~~l~~l~~ 218 (332)
T 2ft3_A 150 NCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEA-KLTGI-PKDL--PETLN-ELHLDHNK----IQAIELEDLLRYSK 218 (332)
T ss_dssp CEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSS-BCSSC-CSSS--CSSCS-CCBCCSSC----CCCCCTTSSTTCTT
T ss_pred CEEECCCCc-cccCCCCcccccCC-ccCEEECcCC-CCCcc-Cccc--cCCCC-EEECCCCc----CCccCHHHhcCCCC
Confidence 777777776 32 334445555 5555522111 11110 0001 12333 33332211 11112234566677
Q ss_pred CCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC--CC
Q 047584 751 LKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP--SV 828 (883)
Q Consensus 751 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l 828 (883)
|+.|++++|..... ....+..+++|+.|++++|.+..+|.++.. +++|+.|+|++|... .++ .+
T Consensus 219 L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~--l~~L~~L~l~~N~l~-~~~~~~~ 284 (332)
T 2ft3_A 219 LYRLGLGHNQIRMI-----------ENGSLSFLPTLRELHLDNNKLSRVPAGLPD--LKLLQVVYLHTNNIT-KVGVNDF 284 (332)
T ss_dssp CSCCBCCSSCCCCC-----------CTTGGGGCTTCCEEECCSSCCCBCCTTGGG--CTTCCEEECCSSCCC-BCCTTSS
T ss_pred CCEEECCCCcCCcC-----------ChhHhhCCCCCCEEECCCCcCeecChhhhc--CccCCEEECCCCCCC-ccChhHc
Confidence 77777766422210 111234456777777777777777766643 677777777776543 222 22
Q ss_pred CC------cCcccceeccCcccce-ecCCCccCCCCCCCCCCcceeeccccc
Q 047584 829 GQ------LPSLKHLVVCGMSSVR-RLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 829 ~~------lp~L~~L~L~~~~~l~-~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
.. .++|+.|++++|+... .++...+ ..+++|+.|+++++.
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~-----~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATF-----RCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG-----TTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccc-----cccchhhhhhccccc
Confidence 21 4567777777664321 2222211 136677777766654
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=1.3e-17 Score=199.83 Aligned_cols=150 Identities=18% Similarity=0.156 Sum_probs=112.1
Q ss_pred ccCCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCc-ccc
Q 047584 543 CFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPD-SVG 621 (883)
Q Consensus 543 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~-~i~ 621 (883)
..+.++++|.+..+...... ...+.++++|++|.+..+. +....+..+.++++|++|+|++|.+..+|. .++
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNT------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSC------CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCc------cCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 34578899988766543321 2346778889998876543 333334455589999999999999999886 589
Q ss_pred CCCcccEEeccCCCccccc-cccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCcc-C--CCCCCC
Q 047584 622 DLRYLRYLNLSGTVIRSLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLG-I--VRLTCL 697 (883)
Q Consensus 622 ~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i--~~L~~L 697 (883)
++++|++|++++|.++.+| ..++++++|++|++++|......|..+.++++|++|++++|. +..+++. + ..+++|
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSL 173 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEE
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccc
Confidence 9999999999999999886 578999999999999965544456678899999999999987 5655543 2 244666
Q ss_pred Ccc
Q 047584 698 QTL 700 (883)
Q Consensus 698 ~~L 700 (883)
++|
T Consensus 174 ~~L 176 (680)
T 1ziw_A 174 KKL 176 (680)
T ss_dssp SEE
T ss_pred cEE
Confidence 666
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.73 E-value=5.5e-18 Score=197.57 Aligned_cols=150 Identities=21% Similarity=0.216 Sum_probs=112.5
Q ss_pred CCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcC-ccccCCCcccEEeccCCCccccccc-cccCCC
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELP-DSVGDLRYLRYLNLSGTVIRSLPES-VNKLYN 648 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~ 648 (883)
++|++|.+..+. +....+..+.++++|++|+|++|.+..++ ..++++++|++|++++|.++.+|+. ++++++
T Consensus 26 ~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNK------ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSC------CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCc------cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 678888766543 33223345668999999999999998875 6789999999999999999988765 999999
Q ss_pred ccEEecCCCCchh--hchhhhcCcCCCCceecCCCCCccccC-ccCCCCCCCCccCceEeCcCCCCCcccccccccCCCe
Q 047584 649 LHSLLLEDCDRLK--KLCADMGNLIKLHHLKNSNTDSLEEMP-LGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERT 725 (883)
Q Consensus 649 L~~L~l~~c~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 725 (883)
|++|++++| .+. ..|..+.++++|++|++++|..+..+| ..++++++|++|.... +...+.....+.++++|+ .
T Consensus 100 L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~-~ 176 (549)
T 2z81_A 100 LKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIH-H 176 (549)
T ss_dssp CCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE-TTCCEECTTTTTTCSEEE-E
T ss_pred CcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC-CcccccChhhhhccccCc-e
Confidence 999999996 454 346779999999999999997667776 4688899998884332 223332334455555555 4
Q ss_pred eEEe
Q 047584 726 LKIS 729 (883)
Q Consensus 726 L~i~ 729 (883)
|.+.
T Consensus 177 L~l~ 180 (549)
T 2z81_A 177 LTLH 180 (549)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 5444
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=7e-17 Score=175.10 Aligned_cols=269 Identities=16% Similarity=0.113 Sum_probs=189.7
Q ss_pred cCCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCC
Q 047584 544 FSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDL 623 (883)
Q Consensus 544 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l 623 (883)
.+..++.|.+..+...... ...+..+++|+.|.+..+. +..-.+..+.++++|++|+|++|.+..+|..+.
T Consensus 52 ~~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-- 122 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK------ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-- 122 (332)
T ss_dssp CCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC------CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--
T ss_pred CCCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc------cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--
Confidence 3467888888766543221 2346788899999876543 333334556689999999999999999998776
Q ss_pred CcccEEeccCCCcccccc-ccccCCCccEEecCCCCch--hhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCcc
Q 047584 624 RYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRL--KKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTL 700 (883)
Q Consensus 624 ~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l--~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 700 (883)
.+|++|++++|.++.+|. .+.++++|++|++++|... ...|..+..+ +|++|++++|. +..+|..+. ++|++|
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L 198 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNEL 198 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEE
Confidence 899999999999999976 4889999999999996432 2456667777 99999999998 888887765 677777
Q ss_pred CceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCC
Q 047584 701 CNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVL 780 (883)
Q Consensus 701 ~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 780 (883)
..- .+.........+.++++|+ .|.+.+.. .....+..+..+++|+.|++++|... .....+
T Consensus 199 ~l~-~n~i~~~~~~~l~~l~~L~-~L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~------------~lp~~l 260 (332)
T 2ft3_A 199 HLD-HNKIQAIELEDLLRYSKLY-RLGLGHNQ----IRMIENGSLSFLPTLRELHLDNNKLS------------RVPAGL 260 (332)
T ss_dssp BCC-SSCCCCCCTTSSTTCTTCS-CCBCCSSC----CCCCCTTGGGGCTTCCEEECCSSCCC------------BCCTTG
T ss_pred ECC-CCcCCccCHHHhcCCCCCC-EEECCCCc----CCcCChhHhhCCCCCCEEECCCCcCe------------ecChhh
Confidence 332 2222233334566777777 66665432 11222335678899999999886322 122345
Q ss_pred CCCCCcceEEEEecCCCCCCcCCCcC-----CCCCeeEEEEecCCCC--CCCC-CCCCcCcccceeccCcc
Q 047584 781 KPHANLEQFCIKGYGGMKFPTWLGDS-----LFSNLVTLKFENCGIC--TALP-SVGQLPSLKHLVVCGMS 843 (883)
Q Consensus 781 ~~~~~L~~L~l~~~~~~~~p~~~~~~-----~l~~L~~L~L~~~~~~--~~l~-~l~~lp~L~~L~L~~~~ 843 (883)
..+++|+.|++++|.+..+|...... .+++|+.|++++|+.. ...| .+..+++|+.|++++|.
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 66789999999999988876433211 1578999999999864 2333 67889999999999874
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=194.24 Aligned_cols=128 Identities=24% Similarity=0.348 Sum_probs=80.4
Q ss_pred CCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCc-cccCCC
Q 047584 546 RNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPD-SVGDLR 624 (883)
Q Consensus 546 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~-~i~~l~ 624 (883)
..+++|.+..+..... ....+.++++|+.|.+.++. +..-.+..+.++++|++|++++|.+..+|. .+++++
T Consensus 52 ~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 52 PELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp SSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred CCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCc------CCccCHhhhcCccccccccccccccccCCCccccccc
Confidence 4567777665543321 11335677888888765543 222122344578888888888888877764 578888
Q ss_pred cccEEeccCCCccc--cccccccCCCccEEecCCCCchhhc-hhhhcCcCCC----CceecCCC
Q 047584 625 YLRYLNLSGTVIRS--LPESVNKLYNLHSLLLEDCDRLKKL-CADMGNLIKL----HHLKNSNT 681 (883)
Q Consensus 625 ~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~c~~l~~l-p~~i~~L~~L----~~L~l~~~ 681 (883)
+|++|++++|.++. +|..++++++|++|++++|. +..+ |..+..+++| ++|++++|
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCC
Confidence 88888888888774 57788888888888888753 3333 3344444444 44444444
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=2.2e-18 Score=185.46 Aligned_cols=241 Identities=13% Similarity=0.137 Sum_probs=155.3
Q ss_pred CCCceeEEeeCCCCCCCcC-ccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCcee
Q 047584 599 KLQRLRVFSLRGYCIPELP-DSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLK 677 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~ 677 (883)
.+++|++|+|++|.+..++ ..+..+++|++|+|++|.++.+++ +..+++|++|++++| .+..+| .+++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CCCCcCEEE
Confidence 5667888888888877764 567788888888888888776665 777888888888874 455554 337788888
Q ss_pred cCCCCCccccCccCCCCCCCCccCceEeCcCC--CCCcccccccccCCCeeEEeccCCCCCccchHhhh-cCCCCCCCce
Q 047584 678 NSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDS--GSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQ-MDGKKNLKEL 754 (883)
Q Consensus 678 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~--~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~-l~~~~~L~~L 754 (883)
+++|. +..++.. .+++|++|. .+.+. ......+.++++|+ .|.+.+.. .....+.. ...+++|+.|
T Consensus 106 l~~n~-l~~~~~~--~~~~L~~L~---l~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 106 AANNN-ISRVSCS--RGQGKKNIY---LANNKITMLRDLDEGCRSRVQ-YLDLKLNE----IDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp CCSSC-CSEEEEC--CCSSCEEEE---CCSSCCCSGGGBCTGGGSSEE-EEECTTSC----CCEEEGGGGGGGTTTCCEE
T ss_pred CCCCc-cCCcCcc--ccCCCCEEE---CCCCCCCCccchhhhccCCCC-EEECCCCC----CCcccHHHHhhccCcCCEE
Confidence 88776 5555532 345565552 22222 11122344555555 55554321 11111222 2457888999
Q ss_pred EEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCc
Q 047584 755 SLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPS 833 (883)
Q Consensus 755 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~ 833 (883)
++++|... .+.....+++|+.|++++|.+..+|..+.. +++|+.|+|++|... .+| .+..+++
T Consensus 175 ~L~~N~l~-------------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--l~~L~~L~L~~N~l~-~l~~~~~~l~~ 238 (317)
T 3o53_A 175 NLQYNFIY-------------DVKGQVVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLV-LIEKALRFSQN 238 (317)
T ss_dssp ECTTSCCC-------------EEECCCCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred ECCCCcCc-------------ccccccccccCCEEECCCCcCCcchhhhcc--cCcccEEECcCCccc-chhhHhhcCCC
Confidence 88775322 123334578899999999888888777653 789999999988654 444 6788889
Q ss_pred ccceeccCcccc-eecCCCccCCCCCCCCCCcceeecccccccccc
Q 047584 834 LKHLVVCGMSSV-RRLDPEFYGKDASIPFPYLETLRFEDMEEWEDW 878 (883)
Q Consensus 834 L~~L~L~~~~~l-~~i~~~~~~~~~~~~~p~L~~L~l~~~~~L~~w 878 (883)
|+.|+|++|+-. ..++..+. .+++|+.|++.+++.++..
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~------~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFS------KNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHH------TCHHHHHHHHHHHHHHHSS
T ss_pred CCEEEccCCCccCcCHHHHHh------ccccceEEECCCchhccCC
Confidence 999999888544 23333222 3788888888877666554
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.71 E-value=6.6e-17 Score=193.57 Aligned_cols=278 Identities=17% Similarity=0.075 Sum_probs=164.0
Q ss_pred CCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCcccccc-ccccCCC
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSLPE-SVNKLYN 648 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~ 648 (883)
++++.|.+..+. +..-....+.++++|++|+|++|.+..+ |..++++++|++|+|++|.++.+|. .++++++
T Consensus 25 ~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQ------LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSSC------CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCCC------CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 678888765543 3332233466899999999999999877 6678999999999999999999987 5999999
Q ss_pred ccEEecCCCCchhhch-hhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCccccc--ccccCCCe
Q 047584 649 LHSLLLEDCDRLKKLC-ADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELK--SLTHLERT 725 (883)
Q Consensus 649 L~~L~l~~c~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~--~L~~L~~~ 725 (883)
|++|++++| .+..+| ..++++++|++|++++|......|..++++++|++|.... +...+.....+. .+++|+ .
T Consensus 99 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~L~-~ 175 (680)
T 1ziw_A 99 LTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFANSSLK-K 175 (680)
T ss_dssp CSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHHHHGGGTTCEES-E
T ss_pred CCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccCHHHhhcccccccc-E
Confidence 999999996 456665 5799999999999999983334455688888888883321 112222222222 345666 5
Q ss_pred eEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHH-----------------------hhhcCCCC
Q 047584 726 LKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEM-----------------------GVLDVLKP 782 (883)
Q Consensus 726 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----------------------~~l~~l~~ 782 (883)
|.+.+.. .....+..+..+.+|+.|++..+... ..... .....+..
T Consensus 176 L~L~~n~----l~~~~~~~~~~l~~L~~L~l~~~~l~-------~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 176 LELSSNQ----IKEFSPGCFHAIGRLFGLFLNNVQLG-------PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp EECTTCC----CCCBCTTGGGGSSEECEEECTTCCCH-------HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred EECCCCc----ccccChhhhhhhhhhhhhhccccccC-------hhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 6654321 11112233444455555554332100 00000 00111222
Q ss_pred C--CCcceEEEEecCCCCCC-cCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCcccce-----ecCCCcc
Q 047584 783 H--ANLEQFCIKGYGGMKFP-TWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMSSVR-----RLDPEFY 853 (883)
Q Consensus 783 ~--~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~-----~i~~~~~ 853 (883)
+ ++|+.|++++|.+..++ .++.. +++|++|+|++|......| .++.+++|+.|++++|..-. .+|. .
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~--i 320 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAW--LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK--I 320 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCE--E
T ss_pred cCcCCCCEEECCCCCcCccCcccccC--cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccc--c
Confidence 2 23666666666555433 34432 5666666666665444333 56666666666666542111 1110 0
Q ss_pred CCCCCCCCCCcceeecccc
Q 047584 854 GKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 854 ~~~~~~~~p~L~~L~l~~~ 872 (883)
....+..+++|+.|+++++
T Consensus 321 ~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CTTTTTTCTTCCEEECCSC
T ss_pred ChhhcccCCCCCEEECCCC
Confidence 0001234677777777764
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=1.8e-17 Score=177.66 Aligned_cols=224 Identities=19% Similarity=0.124 Sum_probs=157.7
Q ss_pred CCCceEeeeccccCCCCCCCCCCchhh-hcCCCceeEEeeCCCCCCCc---CccccCCCcccEEeccCCCcccccccccc
Q 047584 570 IQHLRTFLPVMLTNSGPCYLAPSILPK-LLKLQRLRVFSLRGYCIPEL---PDSVGDLRYLRYLNLSGTVIRSLPESVNK 645 (883)
Q Consensus 570 ~~~lrsl~~~~~~~~~~~~~~~~~~~~-l~~l~~Lr~L~L~~~~~~~l---p~~i~~l~~L~~L~L~~~~i~~lp~~i~~ 645 (883)
.++++.|.+..+. +. .++.. +.++++|++|+|++|.+..+ |..+..+.+|++|++++|.++.+|..+.+
T Consensus 27 ~~~l~~L~L~~n~------l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~ 99 (306)
T 2z66_A 27 PSSATRLELESNK------LQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 99 (306)
T ss_dssp CTTCCEEECCSSC------CC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEET
T ss_pred CCCCCEEECCCCc------cC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCC
Confidence 3678888765543 22 34444 34899999999999998865 56777899999999999999999999999
Q ss_pred CCCccEEecCCCCchhhchh--hhcCcCCCCceecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCC
Q 047584 646 LYNLHSLLLEDCDRLKKLCA--DMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLE 723 (883)
Q Consensus 646 l~~L~~L~l~~c~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 723 (883)
+++|++|++++ +.+..+|. .+..+++|++|++++|......|..++.+++|++|.. ..+. +.
T Consensus 100 l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l---~~n~---l~--------- 163 (306)
T 2z66_A 100 LEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM---AGNS---FQ--------- 163 (306)
T ss_dssp CTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC---TTCE---EG---------
T ss_pred CCCCCEEECCC-CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC---CCCc---cc---------
Confidence 99999999999 46666664 6899999999999999833344455677777776621 1110 00
Q ss_pred CeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCc-C
Q 047584 724 RTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPT-W 802 (883)
Q Consensus 724 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~ 802 (883)
....+..+..+++|+.|++++|.... .....+..+++|+.|++++|.+..+|. .
T Consensus 164 --------------~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 218 (306)
T 2z66_A 164 --------------ENFLPDIFTELRNLTFLDLSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218 (306)
T ss_dssp --------------GGEECSCCTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred --------------cccchhHHhhCcCCCEEECCCCCcCC-----------cCHHHhcCCCCCCEEECCCCccCccChhh
Confidence 00122345566778888876642210 112345566788888888887776654 3
Q ss_pred CCcCCCCCeeEEEEecCCCCCCCC-CCCCcC-cccceeccCcc
Q 047584 803 LGDSLFSNLVTLKFENCGICTALP-SVGQLP-SLKHLVVCGMS 843 (883)
Q Consensus 803 ~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp-~L~~L~L~~~~ 843 (883)
+. .+++|+.|+|++|......| .+..+| +|++|+|++|+
T Consensus 219 ~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 219 YK--CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp GT--TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cc--CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 33 37888888888887655544 567774 88888888774
No 54
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=1.2e-16 Score=186.62 Aligned_cols=281 Identities=16% Similarity=0.116 Sum_probs=172.1
Q ss_pred CCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCccccccccccCCCc
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNL 649 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L 649 (883)
++++.|.+..+. +..-.+..+.++++|++|+|++|.++.+ |..++++++|++|+|++|.++.+|.. .+++|
T Consensus 52 ~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNS------ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp TTCCEEECCSSC------CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCcCEEECCCCC------ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 688888776554 3333334666899999999999999987 67789999999999999999999987 89999
Q ss_pred cEEecCCCCchhhc--hhhhcCcCCCCceecCCCCCccccCccCCCCCCC--CccCceEeCcC--CCCCcccccc-----
Q 047584 650 HSLLLEDCDRLKKL--CADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCL--QTLCNFVVAKD--SGSGLRELKS----- 718 (883)
Q Consensus 650 ~~L~l~~c~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~~~~~~~--~~~~~~~l~~----- 718 (883)
++|++++| .+..+ |..++++++|++|++++|. +.. ..++.+++| ++|.... +.. .+.....+.+
T Consensus 124 ~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~-n~l~~~~~~~~~l~~l~~~~ 198 (562)
T 3a79_B 124 RHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDL-VSYHIKGGETESLQIPNTTV 198 (562)
T ss_dssp SEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEE-SSCCCCSSSCCEEEECCEEE
T ss_pred CEEECCCC-CccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeec-ccccccccCcccccccCcce
Confidence 99999995 56554 4789999999999999987 443 245666666 5553222 111 1122222222
Q ss_pred ---------------------cccCCCeeEEeccC----------------------------CCCCccchHhhhcCCCC
Q 047584 719 ---------------------LTHLERTLKISKLE----------------------------NVKCVGDAMEAQMDGKK 749 (883)
Q Consensus 719 ---------------------L~~L~~~L~i~~l~----------------------------~~~~~~~~~~~~l~~~~ 749 (883)
+++|+ .+.+.... -........+..+ ...
T Consensus 199 l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~ 276 (562)
T 3a79_B 199 LHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPR 276 (562)
T ss_dssp EEEEECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTS
T ss_pred EEEEecCccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcc
Confidence 22333 23322210 0000000011111 123
Q ss_pred CCCceEEEeccCC-CCCCCcc----------------------h-hhHHhh-----hc-------------CCCCCCCcc
Q 047584 750 NLKELSLNWTCST-DGSSSRE----------------------A-ETEMGV-----LD-------------VLKPHANLE 787 (883)
Q Consensus 750 ~L~~L~l~~~~~~-~~~~~~~----------------------~-~~~~~~-----l~-------------~l~~~~~L~ 787 (883)
+|++|+++.|... ..+.... + ...... +. ....+++|+
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~ 356 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCce
Confidence 7778888776322 1111000 0 000000 00 014567788
Q ss_pred eEEEEecCCCC-CCcCCCcCCCCCeeEEEEecCCCCC--CCC-CCCCcCcccceeccCcccceecCCCccCCCCCCCCCC
Q 047584 788 QFCIKGYGGMK-FPTWLGDSLFSNLVTLKFENCGICT--ALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPY 863 (883)
Q Consensus 788 ~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~--~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~ 863 (883)
+|++++|.+.. .|.++.. +++|+.|+|++|.... .+| .++.+++|+.|++++|.-...+|...+. .+++
T Consensus 357 ~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----~l~~ 429 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGCST--LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA-----WAES 429 (562)
T ss_dssp EEECCSSCCCTTTTTTCCS--CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC-----CCTT
T ss_pred EEECCCCccccchhhhhcc--cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc-----Cccc
Confidence 88888877665 5666653 7888888888875432 122 4778888888888877433336654333 4789
Q ss_pred cceeeccccc
Q 047584 864 LETLRFEDME 873 (883)
Q Consensus 864 L~~L~l~~~~ 873 (883)
|+.|+++++.
T Consensus 430 L~~L~l~~n~ 439 (562)
T 3a79_B 430 ILVLNLSSNM 439 (562)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCC
Confidence 9999988863
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=3.5e-17 Score=179.17 Aligned_cols=249 Identities=20% Similarity=0.188 Sum_probs=162.7
Q ss_pred CCceEeeeccccCCCCCCCCCCchh-hhcCCCceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCccccccc-cccCC
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILP-KLLKLQRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSLPES-VNKLY 647 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~-~l~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~ 647 (883)
++|+.|.+..+. +. ..+. .+.++++|++|+|++|.+..+ |..+.++++|++|++++|.++.+|.. +.+++
T Consensus 52 ~~L~~L~l~~n~------i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNR------IT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSC------CC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred ccCcEEECCCCc------Cc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 467777665443 22 2222 455788888999988888876 45688888899999988888888776 78888
Q ss_pred CccEEecCCCCchhhchh--hhcCcCCCCceecCCCCCccccC-ccCCCCCCCCccCceEeCcCCCCCcccccccccCCC
Q 047584 648 NLHSLLLEDCDRLKKLCA--DMGNLIKLHHLKNSNTDSLEEMP-LGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLER 724 (883)
Q Consensus 648 ~L~~L~l~~c~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 724 (883)
+|++|++++| .+..+|. .+..+++|++|++++|..+..++ ..++.+++|++|... .+...+.....+.++++|+
T Consensus 125 ~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~- 201 (353)
T 2z80_A 125 SLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID-ASDLQSYEPKSLKSIQNVS- 201 (353)
T ss_dssp TCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-ETTCCEECTTTTTTCSEEE-
T ss_pred cCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC-CCCcCccCHHHHhccccCC-
Confidence 8999998884 5667776 57888889999888885456554 457788888877332 2223333345566666666
Q ss_pred eeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCC-----C
Q 047584 725 TLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMK-----F 799 (883)
Q Consensus 725 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~ 799 (883)
.|.+.+... .......+..+++|+.|++++|....... ..+........++.++++++.... +
T Consensus 202 ~L~l~~n~l----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--------~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 202 HLILHMKQH----ILLLEIFVDVTSSVECLELRDTDLDTFHF--------SELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp EEEEECSCS----TTHHHHHHHHTTTEEEEEEESCBCTTCCC--------C------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred eecCCCCcc----ccchhhhhhhcccccEEECCCCccccccc--------cccccccccchhhccccccccccCcchhhh
Confidence 666654321 11122234456889999998863332110 011122334567777777765542 5
Q ss_pred CcCCCcCCCCCeeEEEEecCCCCCCCC-C-CCCcCcccceeccCccc
Q 047584 800 PTWLGDSLFSNLVTLKFENCGICTALP-S-VGQLPSLKHLVVCGMSS 844 (883)
Q Consensus 800 p~~~~~~~l~~L~~L~L~~~~~~~~l~-~-l~~lp~L~~L~L~~~~~ 844 (883)
|.++.. +++|+.|+|++|... .+| . ++.+++|++|+|++|+-
T Consensus 270 ~~~l~~--l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 270 MKLLNQ--ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHHT--CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHHHhc--ccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence 666643 788999999888654 555 3 57888999999988853
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=2.7e-17 Score=174.19 Aligned_cols=99 Identities=28% Similarity=0.316 Sum_probs=70.0
Q ss_pred CceeEEeeCCCCCCCcC-ccccCCCcccEEeccCCCcccc-ccccccCCCccEEecCCCCchhhc-hhhhcCcCCCCcee
Q 047584 601 QRLRVFSLRGYCIPELP-DSVGDLRYLRYLNLSGTVIRSL-PESVNKLYNLHSLLLEDCDRLKKL-CADMGNLIKLHHLK 677 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~ 677 (883)
++|++|+|++|.+..+| ..+..+++|++|++++|.++.+ |..+.++++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 56777888888777765 4567778888888888877766 567777888888888775545555 55677778888888
Q ss_pred cCCCCCcccc-CccCCCCCCCCcc
Q 047584 678 NSNTDSLEEM-PLGIVRLTCLQTL 700 (883)
Q Consensus 678 l~~~~~~~~~-p~~i~~L~~L~~L 700 (883)
+++|. +..+ |..++.+++|++|
T Consensus 112 l~~n~-l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 112 LDRCG-LQELGPGLFRGLAALQYL 134 (285)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCc-CCEECHhHhhCCcCCCEE
Confidence 88776 4444 3445666666665
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=1.1e-17 Score=190.91 Aligned_cols=236 Identities=14% Similarity=0.117 Sum_probs=152.2
Q ss_pred CCCceeEEeeCCCCCCCcC-ccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCcee
Q 047584 599 KLQRLRVFSLRGYCIPELP-DSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLK 677 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~ 677 (883)
.+++|++|+|++|.+..++ ..++.+++|++|+|++|.++.+++ ++.+++|++|+|++| .+..+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 3447888888888887764 577888888888888888876665 888888888888884 5666553 37888888
Q ss_pred cCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcC-CCCCCCceEE
Q 047584 678 NSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMD-GKKNLKELSL 756 (883)
Q Consensus 678 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~-~~~~L~~L~l 756 (883)
+++|. +..+|.. .+++|++|... .+...+.....+.++++|+ .|.+.+.. .....+..+. .+++|+.|+|
T Consensus 106 L~~N~-l~~~~~~--~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 106 AANNN-ISRVSCS--RGQGKKNIYLA-NNKITMLRDLDEGCRSRVQ-YLDLKLNE----IDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp CCSSC-CCCEEEC--CCSSCEEEECC-SSCCCSGGGBCGGGGSSEE-EEECTTSC----CCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCCc-CCCCCcc--ccCCCCEEECC-CCCCCCCCchhhcCCCCCC-EEECCCCC----CCCcChHHHhhhCCcccEEec
Confidence 88887 5655542 35566666221 1111222223445555555 55554321 1122233333 6788888888
Q ss_pred EeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCcccc
Q 047584 757 NWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKH 836 (883)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~ 836 (883)
++|... .+.....+++|+.|++++|.+..+|..+.. +++|+.|+|++|......+.++.+++|+.
T Consensus 177 s~N~l~-------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 177 QYNFIY-------------DVKGQVVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (487)
T ss_dssp TTSCCC-------------EEECCCCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred CCCccc-------------cccccccCCCCCEEECCCCCCCCCCHhHcC--CCCccEEEecCCcCcccchhhccCCCCCE
Confidence 775322 123344578888899988888888777643 78899999988865543336778888899
Q ss_pred eeccCcccc-eecCCCccCCCCCCCCCCcceeecc
Q 047584 837 LVVCGMSSV-RRLDPEFYGKDASIPFPYLETLRFE 870 (883)
Q Consensus 837 L~L~~~~~l-~~i~~~~~~~~~~~~~p~L~~L~l~ 870 (883)
|++++|+-. ..+|..+. .+++|+.|.+.
T Consensus 242 L~l~~N~l~c~~~~~~~~------~l~~L~~l~~~ 270 (487)
T 3oja_A 242 FDLRGNGFHCGTLRDFFS------KNQRVQTVAKQ 270 (487)
T ss_dssp EECTTCCBCHHHHHHHHT------TCHHHHHHHHH
T ss_pred EEcCCCCCcCcchHHHHH------hCCCCcEEecc
Confidence 988887543 23332222 36677766664
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=1e-16 Score=181.72 Aligned_cols=223 Identities=18% Similarity=0.178 Sum_probs=142.7
Q ss_pred CCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcC-ccccCCCcccEEeccCCCccccccc-cccCCC
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELP-DSVGDLRYLRYLNLSGTVIRSLPES-VNKLYN 648 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~ 648 (883)
++++.|.+..+. +..-.+..+.++++|++|+|++|.+..++ ..+.++.+|++|+|++|.++.+|.. +.++++
T Consensus 75 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENN------IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCccEEECcCCc------CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 578888765543 33323445668999999999999999875 6789999999999999999999765 888999
Q ss_pred ccEEecCCCCchhhchh-hhcCcCCCCceecCCCCCccccCcc-CCCCCCCCccCceEeCcCCCCCcccccccccCCCee
Q 047584 649 LHSLLLEDCDRLKKLCA-DMGNLIKLHHLKNSNTDSLEEMPLG-IVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTL 726 (883)
Q Consensus 649 L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L 726 (883)
|++|+|++| .+..+|. .+..+++|++|++++|..+..+|.. +..+++|++| .++.+....+..+..+++|+ .|
T Consensus 149 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L---~L~~n~l~~~~~~~~l~~L~-~L 223 (452)
T 3zyi_A 149 LRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL---NLGMCNIKDMPNLTPLVGLE-EL 223 (452)
T ss_dssp CCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE---ECTTSCCSSCCCCTTCTTCC-EE
T ss_pred CCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE---ECCCCccccccccccccccc-EE
Confidence 999999995 5667765 6899999999999998778887764 7777777777 33332222233444444554 44
Q ss_pred EEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcC
Q 047584 727 KISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDS 806 (883)
Q Consensus 727 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 806 (883)
.+.+.. .....+..+.++++|+.|++++|... ......+..+++|+.|+|++|.+..+|.....
T Consensus 224 ~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~- 287 (452)
T 3zyi_A 224 EMSGNH----FPEIRPGSFHGLSSLKKLWVMNSQVS-----------LIERNAFDGLASLVELNLAHNNLSSLPHDLFT- 287 (452)
T ss_dssp ECTTSC----CSEECGGGGTTCTTCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCCTTSST-
T ss_pred ECcCCc----CcccCcccccCccCCCEEEeCCCcCc-----------eECHHHhcCCCCCCEEECCCCcCCccChHHhc-
Confidence 443311 11222334555555555555443111 00112234445555555555555555433221
Q ss_pred CCCCeeEEEEecCC
Q 047584 807 LFSNLVTLKFENCG 820 (883)
Q Consensus 807 ~l~~L~~L~L~~~~ 820 (883)
.+++|+.|+|++|+
T Consensus 288 ~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 288 PLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCCEEEccCCC
Confidence 24555555555554
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=1.3e-15 Score=177.21 Aligned_cols=235 Identities=20% Similarity=0.153 Sum_probs=150.0
Q ss_pred CCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCcc
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLH 650 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 650 (883)
++|+.|.+.++.. . .++. .+++|++|+|++|.++.+|. .+++|++|+|++|.++.+|. .+.+|+
T Consensus 61 ~~L~~L~L~~N~l------~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~ 124 (622)
T 3g06_A 61 AHITTLVIPDNNL------T-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLC 124 (622)
T ss_dssp TTCSEEEECSCCC------S-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCC
T ss_pred CCCcEEEecCCCC------C-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcC
Confidence 6777777655432 1 1221 46788888888888888876 67888888888888888877 567888
Q ss_pred EEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEec
Q 047584 651 SLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISK 730 (883)
Q Consensus 651 ~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~ 730 (883)
+|++++| .+..+|.. +++|++|++++|. +..+|..+ .+|+.| .+..+....+. ..+++|+ .|.+.+
T Consensus 125 ~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~~---~~L~~L---~L~~N~l~~l~--~~~~~L~-~L~Ls~ 190 (622)
T 3g06_A 125 KLWIFGN-QLTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKL---WAYNNQLTSLP--MLPSGLQ-ELSVSD 190 (622)
T ss_dssp EEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSCCCCCC---TTCCEE---ECCSSCCSCCC--CCCTTCC-EEECCS
T ss_pred EEECCCC-CCCcCCCC---CCCCCEEECcCCc-CCCcCCcc---CCCCEE---ECCCCCCCCCc--ccCCCCc-EEECCC
Confidence 8888874 56677753 4788888888886 67776543 334444 22222211222 3345555 555543
Q ss_pred cCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCC
Q 047584 731 LENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSN 810 (883)
Q Consensus 731 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~ 810 (883)
..- .. ++ ...++|+.|+++.|.... +. ..+++|+.|++++|.+..+|. .+++
T Consensus 191 N~l-~~----l~---~~~~~L~~L~L~~N~l~~-------------l~--~~~~~L~~L~Ls~N~L~~lp~-----~l~~ 242 (622)
T 3g06_A 191 NQL-AS----LP---TLPSELYKLWAYNNRLTS-------------LP--ALPSGLKELIVSGNRLTSLPV-----LPSE 242 (622)
T ss_dssp SCC-SC----CC---CCCTTCCEEECCSSCCSS-------------CC--CCCTTCCEEECCSSCCSCCCC-----CCTT
T ss_pred CCC-CC----CC---CccchhhEEECcCCcccc-------------cC--CCCCCCCEEEccCCccCcCCC-----CCCc
Confidence 211 10 11 123678888876642211 11 123678888888888777772 2678
Q ss_pred eeEEEEecCCCCCCCCCCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccccc
Q 047584 811 LVTLKFENCGICTALPSVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 811 L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
|+.|+|++|. ++.+|. .+++|+.|+|++| .+..+|..+.. +++|+.|+|++++
T Consensus 243 L~~L~Ls~N~-L~~lp~--~~~~L~~L~Ls~N-~L~~lp~~l~~------l~~L~~L~L~~N~ 295 (622)
T 3g06_A 243 LKELMVSGNR-LTSLPM--LPSGLLSLSVYRN-QLTRLPESLIH------LSSETTVNLEGNP 295 (622)
T ss_dssp CCEEECCSSC-CSCCCC--CCTTCCEEECCSS-CCCSCCGGGGG------SCTTCEEECCSCC
T ss_pred CcEEECCCCC-CCcCCc--ccccCcEEeCCCC-CCCcCCHHHhh------ccccCEEEecCCC
Confidence 8888888884 445665 5678888888877 56677765544 7888888888765
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=1.6e-16 Score=168.21 Aligned_cols=94 Identities=24% Similarity=0.264 Sum_probs=78.9
Q ss_pred eEEeeCCCCCCCcCccccCCCcccEEeccCCCccccc-cccccCCCccEEecCCCCchhhc-hhhhcCcCCCCceecCCC
Q 047584 604 RVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLP-ESVNKLYNLHSLLLEDCDRLKKL-CADMGNLIKLHHLKNSNT 681 (883)
Q Consensus 604 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~ 681 (883)
++++.+++.++.+|..+ ..+|++|++++|.++.+| ..+.++++|++|++++| .+..+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence 68899999999998765 469999999999999887 46899999999999995 45555 778999999999999999
Q ss_pred CCcccc-CccCCCCCCCCcc
Q 047584 682 DSLEEM-PLGIVRLTCLQTL 700 (883)
Q Consensus 682 ~~~~~~-p~~i~~L~~L~~L 700 (883)
..+..+ |..+..+++|++|
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEE
T ss_pred CCccccCHHHhcCCcCCCEE
Confidence 646666 5567777777777
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=6.7e-16 Score=183.29 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=102.6
Q ss_pred cccCCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhh-hcCCCceeEEeeCCCCCCCcCc-c
Q 047584 542 QCFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPK-LLKLQRLRVFSLRGYCIPELPD-S 619 (883)
Q Consensus 542 ~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~-l~~l~~Lr~L~L~~~~~~~lp~-~ 619 (883)
...+..+++|.+..+...... ...+..+++|+.|.+..+. +. .+++. +.++++|++|+|++|.++.+|. .
T Consensus 48 ~~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~------i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE------IQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp SSSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC------CC-EECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred CCCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc------CC-CcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 345678899988766544322 2356788899999876543 22 23333 4589999999999999999875 5
Q ss_pred ccCCCcccEEeccCCCcccccc-ccccCCCccEEecCCCCchh--hchhhhcCcCCCCceecCCCC
Q 047584 620 VGDLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLK--KLCADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 620 i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~--~lp~~i~~L~~L~~L~l~~~~ 682 (883)
+.+|.+|++|+|++|.++.+|+ .++++++|++|++++| .+. .+|..+..+++|++|++++|.
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc
Confidence 7999999999999999999876 5899999999999995 444 457788999999999999886
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=178.28 Aligned_cols=223 Identities=15% Similarity=0.153 Sum_probs=139.1
Q ss_pred CCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcC-ccccCCCcccEEeccCCCcccccc-ccccCCC
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELP-DSVGDLRYLRYLNLSGTVIRSLPE-SVNKLYN 648 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~ 648 (883)
++++.|.+..+. +..-....+.++++|++|+|++|.+..++ ..+.++.+|++|+|++|.++.+|. .+..+++
T Consensus 64 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQ------IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCC------CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCcEEEccCCc------CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 577777765443 33223345668999999999999999875 678999999999999999999976 6899999
Q ss_pred ccEEecCCCCchhhchh-hhcCcCCCCceecCCCCCccccCc-cCCCCCCCCccCceEeCcCCCCCcccccccccCCCee
Q 047584 649 LHSLLLEDCDRLKKLCA-DMGNLIKLHHLKNSNTDSLEEMPL-GIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTL 726 (883)
Q Consensus 649 L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L 726 (883)
|++|++++| .+..+|. .+..+++|++|++++|..+..+|. .+..+++|++| ..+.+....+..+..+++|+ .|
T Consensus 138 L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L---~L~~n~l~~~~~~~~l~~L~-~L 212 (440)
T 3zyj_A 138 LKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL---NLAMCNLREIPNLTPLIKLD-EL 212 (440)
T ss_dssp CCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE---ECTTSCCSSCCCCTTCSSCC-EE
T ss_pred CceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee---cCCCCcCccccccCCCcccC-EE
Confidence 999999995 5666665 689999999999999876777775 47777777777 33332222333344444444 44
Q ss_pred EEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcC
Q 047584 727 KISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDS 806 (883)
Q Consensus 727 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 806 (883)
.+.+.. .....+..+.++++|+.|+++.|... ......+..+++|+.|+|++|.+..+|.....
T Consensus 213 ~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~- 276 (440)
T 3zyj_A 213 DLSGNH----LSAIRPGSFQGLMHLQKLWMIQSQIQ-----------VIERNAFDNLQSLVEINLAHNNLTLLPHDLFT- 276 (440)
T ss_dssp ECTTSC----CCEECTTTTTTCTTCCEEECTTCCCC-----------EECTTSSTTCTTCCEEECTTSCCCCCCTTTTS-
T ss_pred ECCCCc----cCccChhhhccCccCCEEECCCCcee-----------EEChhhhcCCCCCCEEECCCCCCCccChhHhc-
Confidence 443211 11112333445555555555442111 00112233444555555555555444432221
Q ss_pred CCCCeeEEEEecCC
Q 047584 807 LFSNLVTLKFENCG 820 (883)
Q Consensus 807 ~l~~L~~L~L~~~~ 820 (883)
.+++|+.|+|++|+
T Consensus 277 ~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 277 PLHHLERIHLHHNP 290 (440)
T ss_dssp SCTTCCEEECCSSC
T ss_pred cccCCCEEEcCCCC
Confidence 24555555555544
No 63
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=2.6e-15 Score=164.04 Aligned_cols=290 Identities=14% Similarity=0.159 Sum_probs=180.9
Q ss_pred ccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCC------CHH
Q 047584 187 EAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDF------DVK 260 (883)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~------~~~ 260 (883)
+..|+||+.++++|.+++... +++.|+|++|+|||||++++++.. . .+|+++.... +..
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITRE 75 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHH
Confidence 367999999999999998532 689999999999999999998732 2 6778765432 556
Q ss_pred HHHHHHHHHhcc----------------CCC--CCCChHHHHHHHHHHhCC-CcEEEEEeCCCCCCh-------hhHhhh
Q 047584 261 GLTRTILSSITK----------------QTV--DNNDLNFLQEELKKQLSR-KKFLLVLDDVWNENY-------TDWARL 314 (883)
Q Consensus 261 ~~~~~il~~l~~----------------~~~--~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~-------~~~~~l 314 (883)
.++..+...+.. ... ...+.+++...+.+.... ++++||+||++..+. ..+..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 666666665432 000 123455666666665543 399999999977432 222333
Q ss_pred cccccCCCCCcEEEEeCCChhH-HHh----------cCC-CccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHH
Q 047584 315 SLPFQAGAQGSKIVVTTRNEEV-AKI----------MSL-DQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKE 382 (883)
Q Consensus 315 ~~~l~~~~~gs~ilvTTR~~~v-a~~----------~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~ 382 (883)
...+. ...+.++|+|++...+ ... .+. ...+.+.+|+.+|+.+++........ ... -.+.+..
T Consensus 156 ~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~-~~~---~~~~~~~ 230 (350)
T 2qen_A 156 AYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN-LDV---PENEIEE 230 (350)
T ss_dssp HHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT-CCC---CHHHHHH
T ss_pred HHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHH
Confidence 32222 2246789999887653 221 011 24789999999999999987532111 111 1456889
Q ss_pred HHHhcCCChHHHHHHHhhhcCCCChHHHH-HHHhcccccCCCCCCCchhHHHHhhcCC---ChhHHHHhhHhccCCCCce
Q 047584 383 IVIKCNGLPLAAKTLGGLLHGKPYKREWK-GVLSSKIWELPEDRCPIIPALAVSYYYL---PPILKQCFAYCSLFPKDYE 458 (883)
Q Consensus 383 I~~~c~GlPLai~~~~~~l~~~~~~~~w~-~~~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cf~~~s~fp~~~~ 458 (883)
|++.|+|+|+++..++..+........+. ...+ .+...+.-.+..+ ++..+..+..+|. + .
T Consensus 231 i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~ 295 (350)
T 2qen_A 231 AVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE-----------VAKGLIMGELEELRRRSPRYVDILRAIAL---G-Y 295 (350)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-C
T ss_pred HHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH-----------HHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-C
Confidence 99999999999999887643211122221 1111 0111121122223 7889999999988 2 2
Q ss_pred eCHHHHHHHHHhCCCCcCCCCCCChHHHHHHHHHHHHhcCcccccCCCCCcEEe-cchHHHHHH
Q 047584 459 FDEEEIILLWCASGFLDHKESGNPNEDLGRKFFQELRSRSFFQQSATDASRFVM-HDLINDLAR 521 (883)
Q Consensus 459 i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~~sllq~~~~~~~~~~~-Hdlv~~~a~ 521 (883)
++...+....-+.. + .........+++.|++.+++...+ ..|.+ |++++++.+
T Consensus 296 ~~~~~l~~~~~~~~------~-~~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 NRWSLIRDYLAVKG------T-KIPEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp CSHHHHHHHHHHTT------C-CCCHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred CCHHHHHHHHHHHh------C-CCCHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 45555544432210 0 123355778999999999998753 35655 778887754
No 64
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.66 E-value=1.1e-16 Score=141.35 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhc--ccCCHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 047584 12 SVEMLINKLASEGIRLFARQGRIQADLVKWKNKLVTIKAVLDDAEEK--KTTNDAVKLWLGELQNLVYDVEDLLDEFQTE 89 (883)
Q Consensus 12 ~~~~l~~~l~~~~~~~~~~~~~v~~~~~~L~~~L~~i~~~L~~a~~~--~~~~~~~~~wl~~lrd~ayd~eD~lD~~~~~ 89 (883)
+++.+++||++.+.+++.+..||++++++|+++|++|++||.+|+.+ +.+++.++.|+++|||+|||+|||||+|.|+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888899999999999999999999999999999999999987 5679999999999999999999999999987
Q ss_pred H
Q 047584 90 A 90 (883)
Q Consensus 90 ~ 90 (883)
.
T Consensus 82 ~ 82 (115)
T 3qfl_A 82 V 82 (115)
T ss_dssp H
T ss_pred h
Confidence 6
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=2e-16 Score=169.15 Aligned_cols=189 Identities=19% Similarity=0.251 Sum_probs=109.4
Q ss_pred CCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceec
Q 047584 599 KLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKN 678 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l 678 (883)
.+++|++|++++|.+..+| .+..+++|++|++++|.++.+|. +.++++|++|++++| .+..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEEC
Confidence 5667777777777777766 56777777777777777777766 777777777777774 455554 4777777777777
Q ss_pred CCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEe
Q 047584 679 SNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNW 758 (883)
Q Consensus 679 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 758 (883)
++|. +..+|. ++.+++|++|. ++.+....+.. +..+++|+.|+++.
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~---l~~n~l~~~~~-----------------------------l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLY---LDLNQITNISP-----------------------------LAGLTNLQYLSIGN 160 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEE---CCSSCCCCCGG-----------------------------GGGCTTCCEEECCS
T ss_pred CCCC-CCCchh-hcCCCCCCEEE---CCCCccCcCcc-----------------------------ccCCCCccEEEccC
Confidence 7776 555543 55555555552 11111111111 33344555555544
Q ss_pred ccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCccccee
Q 047584 759 TCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKHLV 838 (883)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~ 838 (883)
|... .+..+..+++|+.|++++|.+..+|. +. .+++|+.|+|++|.. ..++.+..+++|+.|+
T Consensus 161 n~l~-------------~~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 161 AQVS-------------DLTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQI-SDVSPLANTSNLFIVT 223 (308)
T ss_dssp SCCC-------------CCGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCC-CBCGGGTTCTTCCEEE
T ss_pred CcCC-------------CChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCcc-CccccccCCCCCCEEE
Confidence 3111 01113344556666666665555554 22 256666666666643 3333456666666666
Q ss_pred ccCc
Q 047584 839 VCGM 842 (883)
Q Consensus 839 L~~~ 842 (883)
+++|
T Consensus 224 l~~N 227 (308)
T 1h6u_A 224 LTNQ 227 (308)
T ss_dssp EEEE
T ss_pred ccCC
Confidence 6655
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=1.2e-17 Score=179.18 Aligned_cols=219 Identities=14% Similarity=0.121 Sum_probs=122.2
Q ss_pred eeEEeeCCCCCCC--cCcccc-------CCCcccEEeccCCCcc-cccccc--ccCCCccEEecCCCCchhhchhhhcCc
Q 047584 603 LRVFSLRGYCIPE--LPDSVG-------DLRYLRYLNLSGTVIR-SLPESV--NKLYNLHSLLLEDCDRLKKLCADMGNL 670 (883)
Q Consensus 603 Lr~L~L~~~~~~~--lp~~i~-------~l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~l~~c~~l~~lp~~i~~L 670 (883)
|++|+|++|.+.. +|..+. ++.+|++|+|++|.++ .+|..+ ..+++|++|++++| .+..+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH
Confidence 7777777777643 455554 6788888888888887 567765 77888888888874 455556666666
Q ss_pred -----CCCCceecCCCCCccccC-ccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhh
Q 047584 671 -----IKLHHLKNSNTDSLEEMP-LGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQ 744 (883)
Q Consensus 671 -----~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~ 744 (883)
++|++|++++|. +..+| ..++.+++|++|. .+.+. .. .....+..
T Consensus 144 ~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~---Ls~N~-----------------------l~--~~~~~~~~ 194 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLD---LSDNP-----------------------EL--GERGLISA 194 (312)
T ss_dssp HTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEE---CCSCT-----------------------TC--HHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEE---CCCCC-----------------------cC--cchHHHHH
Confidence 788888888877 55554 5566666666662 11111 00 00001111
Q ss_pred c--CCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCC--cCCCcCCCCCeeEEEEecCC
Q 047584 745 M--DGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFP--TWLGDSLFSNLVTLKFENCG 820 (883)
Q Consensus 745 l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p--~~~~~~~l~~L~~L~L~~~~ 820 (883)
+ ..+++|+.|++++|.... ........+..+++|+.|++++|.+...+ ..+. .+++|+.|+|++|.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMET--------PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD--WPSQLNSLNLSFTG 264 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCC--------HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC--CCTTCCEEECTTSC
T ss_pred HHhccCCCCCEEECCCCcCcc--------hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh--hcCCCCEEECCCCc
Confidence 2 455666666665532110 00000111123456666666666655533 1121 25666666666664
Q ss_pred CCCCCC-CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeecccc
Q 047584 821 ICTALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 821 ~~~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
.. .+| .+. ++|++|+|++| .++.+|. +. .+++|+.|++++.
T Consensus 265 l~-~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~------~l~~L~~L~L~~N 306 (312)
T 1wwl_A 265 LK-QVPKGLP--AKLSVLDLSYN-RLDRNPS-PD------ELPQVGNLSLKGN 306 (312)
T ss_dssp CS-SCCSSCC--SEEEEEECCSS-CCCSCCC-TT------TSCEEEEEECTTC
T ss_pred cC-hhhhhcc--CCceEEECCCC-CCCCChh-Hh------hCCCCCEEeccCC
Confidence 43 444 333 66666666655 4554443 22 3666666666654
No 67
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.65 E-value=1.5e-15 Score=170.01 Aligned_cols=313 Identities=12% Similarity=0.031 Sum_probs=187.9
Q ss_pred cccceecchhhHHHHHHHH-cCCCCCCCCCceEEEE--EecCCchHHHHHHHHhcchhhh---ccCC-eEEEEEeCCCCC
Q 047584 186 VEAKVYGRETEKKEIVELL-LKDDSRNDGGFAVIPI--IGMGGLGKTTLAQLVYNDKRVQ---DHFD-LKAWTCVSEDFD 258 (883)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~s~~~~ 258 (883)
.+..++||+.++++|.+++ ...........+.+.| +|++|+||||||+++++..... ..|+ ..+|+++....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3467999999999999988 4211000012356666 9999999999999999843221 1123 367888777778
Q ss_pred HHHHHHHHHHHhccCCC-CCCChHHHHHHHHHHhC--CCcEEEEEeCCCCCC------hhhHhhhcccccCC---C--CC
Q 047584 259 VKGLTRTILSSITKQTV-DNNDLNFLQEELKKQLS--RKKFLLVLDDVWNEN------YTDWARLSLPFQAG---A--QG 324 (883)
Q Consensus 259 ~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~g 324 (883)
...++..++.+++.... ...+...+...+.+.+. +++++|||||+|... .+.+..+...+... . ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 88999999998865432 12345566666666664 679999999997632 23333333333221 1 34
Q ss_pred cEEEEeCCChhHHH--------hcC-CCccEeCCCCCHHhHHHHHHhhh---cCCCCCCCCccHHHHHHHHHHhcC----
Q 047584 325 SKIVVTTRNEEVAK--------IMS-LDQAYELKSLSTEDCLSVLAQHS---LETTDFSSHKSLEEIGKEIVIKCN---- 388 (883)
Q Consensus 325 s~ilvTTR~~~va~--------~~~-~~~~~~l~~L~~~~~~~Lf~~~a---~~~~~~~~~~~l~~~~~~I~~~c~---- 388 (883)
..+|+||+...+.. ... ....+.+.+|+.++.+++|...+ +... .--.+.+..|++.|+
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT-----VWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT-----SCCHHHHHHHHHHHCGGGT
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC-----CCChHHHHHHHHHHHHhcc
Confidence 45787887654321 111 12239999999999999997653 2211 111467888999999
Q ss_pred --CChHHHHHHHhhh---c---CCC--ChHHHHHHHhcccccCCCCCCCchhHHHHhhcCCChhHHHHhhHhccCC--CC
Q 047584 389 --GLPLAAKTLGGLL---H---GKP--YKREWKGVLSSKIWELPEDRCPIIPALAVSYYYLPPILKQCFAYCSLFP--KD 456 (883)
Q Consensus 389 --GlPLai~~~~~~l---~---~~~--~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp--~~ 456 (883)
|.|..+..+.... + ... +.+.+......... ...+.-++..||++.+.++..++.+. .+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 9997655544321 1 111 23334333322110 12344567889999999999888754 33
Q ss_pred ceeCHHHHHHHHH--h-CCCCcCCCCCCChHHHHHHHHHHHHhcCcccccC---CCCCcEEecchH
Q 047584 457 YEFDEEEIILLWC--A-SGFLDHKESGNPNEDLGRKFFQELRSRSFFQQSA---TDASRFVMHDLI 516 (883)
Q Consensus 457 ~~i~~~~li~~Wi--a-eg~i~~~~~~~~~e~~~~~~l~~L~~~sllq~~~---~~~~~~~~Hdlv 516 (883)
..++...+...+. + .- .. ...........++++|+..++|.... +..++|++|.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTM-YN---VKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHH-SC---CCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCccHHHHHHHHHHHHHhh-cC---CCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 4566665554442 2 11 00 11123455678899999999997653 233456666554
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=4.9e-16 Score=159.84 Aligned_cols=199 Identities=15% Similarity=0.141 Sum_probs=132.6
Q ss_pred ceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCC-cccccc-ccccCCCccEEecCCCCchhhchh-hhcCcCCCCcee
Q 047584 602 RLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTV-IRSLPE-SVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLK 677 (883)
Q Consensus 602 ~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~-i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~ 677 (883)
.|++|++++|.++.+|. .+.++++|++|++++|. ++.+|. .+.++++|++|++++|+.+..+|. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67788888888877765 57778888888888886 777765 677788888888877556666663 467778888888
Q ss_pred cCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEE
Q 047584 678 NSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLN 757 (883)
Q Consensus 678 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 757 (883)
+++|. +..+|. ++.+++|+.| +.|+++
T Consensus 112 l~~n~-l~~lp~-~~~l~~L~~L---------------------------------------------------~~L~l~ 138 (239)
T 2xwt_C 112 IFNTG-LKMFPD-LTKVYSTDIF---------------------------------------------------FILEIT 138 (239)
T ss_dssp EEEEC-CCSCCC-CTTCCBCCSE---------------------------------------------------EEEEEE
T ss_pred CCCCC-Cccccc-cccccccccc---------------------------------------------------cEEECC
Confidence 87776 555553 4433333321 133333
Q ss_pred ec-cCCCCCCCcchhhHHhhhcCCCCCCCcc-eEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC--CCCCc-C
Q 047584 758 WT-CSTDGSSSREAETEMGVLDVLKPHANLE-QFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP--SVGQL-P 832 (883)
Q Consensus 758 ~~-~~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l-p 832 (883)
.| .... .....+..+++|+ .|++++|.+..+|..... .++|+.|+|++|+.++.+| .+..+ +
T Consensus 139 ~N~~l~~-----------i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~--~~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 139 DNPYMTS-----------IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN--GTKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp SCTTCCE-----------ECTTTTTTTBSSEEEEECCSCCCCEECTTTTT--TCEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred CCcchhh-----------cCcccccchhcceeEEEcCCCCCcccCHhhcC--CCCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 32 0000 0011234456677 777777777777766543 3789999999996455554 57788 9
Q ss_pred cccceeccCcccceecCCCccCCCCCCCCCCcceeeccccccc
Q 047584 833 SLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDMEEW 875 (883)
Q Consensus 833 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~~L 875 (883)
+|+.|+|++| .++.+|.. .|++|+.|.+.++.+|
T Consensus 206 ~L~~L~l~~N-~l~~l~~~--------~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 206 GPSLLDVSQT-SVTALPSK--------GLEHLKELIARNTWTL 239 (239)
T ss_dssp CCSEEECTTC-CCCCCCCT--------TCTTCSEEECTTC---
T ss_pred CCcEEECCCC-ccccCChh--------HhccCceeeccCccCC
Confidence 9999999987 56677643 4899999999988765
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=4.4e-17 Score=175.34 Aligned_cols=246 Identities=14% Similarity=0.080 Sum_probs=174.0
Q ss_pred CCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCC
Q 047584 569 DIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYN 648 (883)
Q Consensus 569 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 648 (883)
.+++|+.|.+..+. +....+..+.++++|++|+|++|.+..+++ +..+++|++|++++|.++.+|. +++
T Consensus 32 ~~~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~ 100 (317)
T 3o53_A 32 SAWNVKELDLSGNP------LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPS 100 (317)
T ss_dssp TGGGCSEEECTTSC------CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTT
T ss_pred cCCCCCEEECcCCc------cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCC
Confidence 45678888765543 333334556689999999999999887765 8899999999999999887763 488
Q ss_pred ccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccC-ccCCCCCCCCccCceEeCcCCCCCcccc-cccccCCCee
Q 047584 649 LHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMP-LGIVRLTCLQTLCNFVVAKDSGSGLREL-KSLTHLERTL 726 (883)
Q Consensus 649 L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l-~~L~~L~~~L 726 (883)
|++|++++| .+..+|. ..+++|++|++++|. +..++ ..++.+++|++|..-. +.........+ ..+++|+ .|
T Consensus 101 L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~-~L 174 (317)
T 3o53_A 101 IETLHAANN-NISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLE-HL 174 (317)
T ss_dssp CCEEECCSS-CCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCC-EE
T ss_pred cCEEECCCC-ccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCC-EE
Confidence 999999984 5666554 347889999999988 66554 4677788888773211 11112122333 3567777 67
Q ss_pred EEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcC
Q 047584 727 KISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDS 806 (883)
Q Consensus 727 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 806 (883)
.+.+..-. . . .....+++|+.|++++|.... ....+..+++|+.|++++|.+..+|.++..
T Consensus 175 ~L~~N~l~----~-~-~~~~~l~~L~~L~Ls~N~l~~------------l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~- 235 (317)
T 3o53_A 175 NLQYNFIY----D-V-KGQVVFAKLKTLDLSSNKLAF------------MGPEFQSAAGVTWISLRNNKLVLIEKALRF- 235 (317)
T ss_dssp ECTTSCCC----E-E-ECCCCCTTCCEEECCSSCCCE------------ECGGGGGGTTCSEEECTTSCCCEECTTCCC-
T ss_pred ECCCCcCc----c-c-ccccccccCCEEECCCCcCCc------------chhhhcccCcccEEECcCCcccchhhHhhc-
Confidence 66543211 1 1 123357899999998863321 122355678999999999999999988754
Q ss_pred CCCCeeEEEEecCCCC-CCCC-CCCCcCcccceeccCcccceecCCC
Q 047584 807 LFSNLVTLKFENCGIC-TALP-SVGQLPSLKHLVVCGMSSVRRLDPE 851 (883)
Q Consensus 807 ~l~~L~~L~L~~~~~~-~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~ 851 (883)
+++|+.|+|++|+.. ..+| .++.+++|+.|++.+++.++..+..
T Consensus 236 -l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 236 -SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp -CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred -CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 899999999999875 4454 7788999999999988777655443
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.62 E-value=9.1e-15 Score=170.07 Aligned_cols=211 Identities=22% Similarity=0.153 Sum_probs=156.6
Q ss_pred CceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCC
Q 047584 601 QRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSN 680 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~ 680 (883)
++|++|+|++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|++++ +.+..+|. .+++|++|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS-NPLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS-CCCCCCCC---CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC-CcCCCCCC---CCCCcCEEECCC
Confidence 789999999999999987 57899999999999999998 789999999999 46777876 678999999999
Q ss_pred CCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEecc
Q 047584 681 TDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTC 760 (883)
Q Consensus 681 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 760 (883)
|. +..+|..+ ++|++| .++.+....+.. .+.+|+ .|.+.+..-. . ++ ..+++|+.|+++.|.
T Consensus 131 N~-l~~lp~~l---~~L~~L---~Ls~N~l~~l~~--~~~~L~-~L~L~~N~l~-~----l~---~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 131 NQ-LTSLPVLP---PGLQEL---SVSDNQLASLPA--LPSELC-KLWAYNNQLT-S----LP---MLPSGLQELSVSDNQ 192 (622)
T ss_dssp SC-CSCCCCCC---TTCCEE---ECCSSCCSCCCC--CCTTCC-EEECCSSCCS-C----CC---CCCTTCCEEECCSSC
T ss_pred CC-CCcCCCCC---CCCCEE---ECcCCcCCCcCC--ccCCCC-EEECCCCCCC-C----Cc---ccCCCCcEEECCCCC
Confidence 98 88888754 666666 333222112211 234555 5555432111 1 11 346889999998753
Q ss_pred CCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCcccceecc
Q 047584 761 STDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKHLVVC 840 (883)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~ 840 (883)
... +. ..+++|+.|++++|.+..+|.. +++|+.|+|++|.. +.+| ..+++|+.|+|+
T Consensus 193 l~~-------------l~--~~~~~L~~L~L~~N~l~~l~~~-----~~~L~~L~Ls~N~L-~~lp--~~l~~L~~L~Ls 249 (622)
T 3g06_A 193 LAS-------------LP--TLPSELYKLWAYNNRLTSLPAL-----PSGLKELIVSGNRL-TSLP--VLPSELKELMVS 249 (622)
T ss_dssp CSC-------------CC--CCCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCC-SCCC--CCCTTCCEEECC
T ss_pred CCC-------------CC--CccchhhEEECcCCcccccCCC-----CCCCCEEEccCCcc-CcCC--CCCCcCcEEECC
Confidence 221 11 1247899999999999888853 58999999999954 4566 567999999999
Q ss_pred CcccceecCCCccCCCCCCCCCCcceeecccc
Q 047584 841 GMSSVRRLDPEFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 841 ~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
+| .++.+|. .+++|+.|+++++
T Consensus 250 ~N-~L~~lp~---------~~~~L~~L~Ls~N 271 (622)
T 3g06_A 250 GN-RLTSLPM---------LPSGLLSLSVYRN 271 (622)
T ss_dssp SS-CCSCCCC---------CCTTCCEEECCSS
T ss_pred CC-CCCcCCc---------ccccCcEEeCCCC
Confidence 88 6777775 2788999988876
No 71
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=1.8e-14 Score=157.86 Aligned_cols=290 Identities=13% Similarity=0.102 Sum_probs=173.8
Q ss_pred ccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC-----CCHHH
Q 047584 187 EAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED-----FDVKG 261 (883)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~~ 261 (883)
+..||||+.+++.|.+ +.. +++.|+|++|+|||+|++++.+. ... ..+|+++... .+...
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHH
Confidence 3679999999999999 732 58999999999999999999874 222 2578887642 34444
Q ss_pred HHHHHHHHhcc-------------C-------CC---------CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh---h
Q 047584 262 LTRTILSSITK-------------Q-------TV---------DNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY---T 309 (883)
Q Consensus 262 ~~~~il~~l~~-------------~-------~~---------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~---~ 309 (883)
.+..+.+.+.. . .. .....+.+...+.+.-. ++++|||||++..+. .
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCch
Confidence 54444443310 0 00 12344555555554322 499999999976421 2
Q ss_pred hHhhhcccccCCCCCcEEEEeCCChhH-HHh---------c-CC-CccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHH
Q 047584 310 DWARLSLPFQAGAQGSKIVVTTRNEEV-AKI---------M-SL-DQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLE 377 (883)
Q Consensus 310 ~~~~l~~~l~~~~~gs~ilvTTR~~~v-a~~---------~-~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~ 377 (883)
+|..+...+.....+.++|+|++.... ... . +. ...+.+.+|+.+++.+++......... ....
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~-- 231 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--DFKD-- 231 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--CCCC--
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC--CCCc--
Confidence 222222222222246789999998653 221 1 11 247899999999999999875321110 1111
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhhcCCCChHHHHHH-HhcccccCCCCCCCchhHHH-Hhhc--CCChhHHHHhhHhccC
Q 047584 378 EIGKEIVIKCNGLPLAAKTLGGLLHGKPYKREWKGV-LSSKIWELPEDRCPIIPALA-VSYY--YLPPILKQCFAYCSLF 453 (883)
Q Consensus 378 ~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~-~~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cf~~~s~f 453 (883)
...|++.|+|+|+++..++..+........|..- .+... ..+...+. +.+. .||+..+..+..+|.
T Consensus 232 --~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~- 301 (357)
T 2fna_A 232 --YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK-------KLILKEFENFLHGREIARKRYLNIMRTLSK- 301 (357)
T ss_dssp --HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-
T ss_pred --HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH-------HHHHHHHHHHhhccccccHHHHHHHHHHHc-
Confidence 2789999999999999998776433223333211 11000 00111111 2111 688899999999998
Q ss_pred CCCceeCHHHHHHHHH-hCCCCcCCCCCCChHHHHHHHHHHHHhcCcccccCCCCCcEE-ecchHHHHH
Q 047584 454 PKDYEFDEEEIILLWC-ASGFLDHKESGNPNEDLGRKFFQELRSRSFFQQSATDASRFV-MHDLINDLA 520 (883)
Q Consensus 454 p~~~~i~~~~li~~Wi-aeg~i~~~~~~~~~e~~~~~~l~~L~~~sllq~~~~~~~~~~-~Hdlv~~~a 520 (883)
+. +...+....- ..|. .........+++.|++.++|...+ ..|+ .|++++++.
T Consensus 302 --g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 --CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp --CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred --CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 22 4444432210 1120 112355678899999999998754 3566 578888764
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=5.6e-15 Score=156.32 Aligned_cols=198 Identities=22% Similarity=0.237 Sum_probs=139.4
Q ss_pred cCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCcccc-ccccccCCCccEEecCCCCchhhchhhhcCcCCCCce
Q 047584 598 LKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHL 676 (883)
Q Consensus 598 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L 676 (883)
.++++|+.++++++.++.+|..+. .+|++|+|++|.++.+ |..+.++++|++|++++ +.+..+|.. ..+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCC-CCCCcCCEE
Confidence 367788888888888888887764 6788889988888877 45788888889999888 456666654 788888888
Q ss_pred ecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEE
Q 047584 677 KNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSL 756 (883)
Q Consensus 677 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 756 (883)
++++|. +..+|..+..+++|++|. ++.+ ++. .+ .+..+.++++|+.|++
T Consensus 83 ~Ls~N~-l~~l~~~~~~l~~L~~L~---l~~N------------~l~---------~l------~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 83 DLSHNQ-LQSLPLLGQTLPALTVLD---VSFN------------RLT---------SL------PLGALRGLGELQELYL 131 (290)
T ss_dssp ECCSSC-CSSCCCCTTTCTTCCEEE---CCSS------------CCC---------CC------CSSTTTTCTTCCEEEC
T ss_pred ECCCCc-CCcCchhhccCCCCCEEE---CCCC------------cCc---------cc------CHHHHcCCCCCCEEEC
Confidence 888887 777777777777666662 1111 010 00 1123556677888888
Q ss_pred EeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCccc
Q 047584 757 NWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLK 835 (883)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~ 835 (883)
++|..... ....+..+++|+.|++++|.+..+|..... .+++|+.|+|++|... .+| .+..+++|+
T Consensus 132 ~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 132 KGNELKTL-----------PPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLY-TIPKGFFGSHLLP 198 (290)
T ss_dssp TTSCCCCC-----------CTTTTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred CCCCCCcc-----------ChhhcccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCC-ccChhhcccccCC
Confidence 76422210 112345668889999999888888765432 3788999999988654 454 677788899
Q ss_pred ceeccCcc
Q 047584 836 HLVVCGMS 843 (883)
Q Consensus 836 ~L~L~~~~ 843 (883)
.|+|++|+
T Consensus 199 ~l~L~~Np 206 (290)
T 1p9a_G 199 FAFLHGNP 206 (290)
T ss_dssp EEECCSCC
T ss_pred eEEeCCCC
Confidence 99998874
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=5.2e-15 Score=155.11 Aligned_cols=196 Identities=21% Similarity=0.281 Sum_probs=131.2
Q ss_pred ceeEEeeCCCCCCCcCccccCCCcccEEeccCCCcccccc-ccccCCCccEEecCCCCchhhchhh-hcCcCCCCceecC
Q 047584 602 RLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLKNS 679 (883)
Q Consensus 602 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~ 679 (883)
.++.++++++.++.+|..+. .+|++|+|++|.++.+|. .+.++++|++|++++ +.+..+|.. +..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECC
Confidence 46778888888888887664 578888888888887765 678888888888888 456666655 4778888888888
Q ss_pred CCCCccccCcc-CCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEe
Q 047584 680 NTDSLEEMPLG-IVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNW 758 (883)
Q Consensus 680 ~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 758 (883)
+|. +..+|.. +..+++|++|. +..+ .+. .. .+..+..+++|+.|++++
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~---l~~n------------~l~---------~~------~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELR---LDRN------------QLK---------SL------PPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEE---CCSS------------CCC---------CC------CTTTTTTCTTCCEEECCS
T ss_pred CCc-CCcCCHhHcccccCCCEEE---CCCC------------ccC---------ee------CHHHhCcCcCCCEEECCC
Confidence 887 6666543 45555555551 1110 000 00 112356678888888877
Q ss_pred ccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccce
Q 047584 759 TCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHL 837 (883)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L 837 (883)
|..... ....+..+++|+.|++++|.+..+|.... ..+++|+.|+|++|......+ .+..+++|+.|
T Consensus 143 n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 143 NELQSL-----------PKGVFDKLTSLKELRLYNNQLKRVPEGAF-DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp SCCCCC-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcCCcc-----------CHhHccCCcccceeEecCCcCcEeChhHh-ccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 522210 11235567888999998888887776422 137889999998885543333 47778889999
Q ss_pred eccCcc
Q 047584 838 VVCGMS 843 (883)
Q Consensus 838 ~L~~~~ 843 (883)
+|++|+
T Consensus 211 ~l~~N~ 216 (270)
T 2o6q_A 211 QLQENP 216 (270)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 988874
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=7.1e-16 Score=165.45 Aligned_cols=202 Identities=17% Similarity=0.204 Sum_probs=149.6
Q ss_pred CCCceeEEeeCCCCCC-CcCccc--cCCCcccEEeccCCCccccccccccC-----CCccEEecCCCCchhhch-hhhcC
Q 047584 599 KLQRLRVFSLRGYCIP-ELPDSV--GDLRYLRYLNLSGTVIRSLPESVNKL-----YNLHSLLLEDCDRLKKLC-ADMGN 669 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~-~lp~~i--~~l~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~l~~c~~l~~lp-~~i~~ 669 (883)
++++|++|+|++|.+. .+|..+ +.+++|++|+|++|.++.+|..++.+ ++|++|++++|. +..+| ..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc
Confidence 6899999999999987 578776 89999999999999999888888887 999999999954 55555 78999
Q ss_pred cCCCCceecCCCCCccc--cCccC--CCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhc
Q 047584 670 LIKLHHLKNSNTDSLEE--MPLGI--VRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQM 745 (883)
Q Consensus 670 L~~L~~L~l~~~~~~~~--~p~~i--~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l 745 (883)
+++|++|++++|..... +|..+ +.+++|++| .+.+.. +..........+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L--------------------------~L~~N~-l~~~~~~~~~~~ 224 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVL--------------------------ALRNAG-METPSGVCSALA 224 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE--------------------------ECTTSC-CCCHHHHHHHHH
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE--------------------------ECCCCc-CcchHHHHHHHH
Confidence 99999999999973322 33333 556666555 211110 000111122334
Q ss_pred CCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCC
Q 047584 746 DGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTAL 825 (883)
Q Consensus 746 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l 825 (883)
..+++|+.|++++|...... ....+..+++|+.|++++|.+..+|.++. ++|+.|+|++|.. +.+
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~----------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l-~~~ 289 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAA----------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRL-DRN 289 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSC----------CCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCC-CSC
T ss_pred hcCCCCCEEECCCCcCCccc----------chhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCC-CCC
Confidence 56789999999875322100 12334456899999999999999998773 7999999999965 445
Q ss_pred CCCCCcCcccceeccCcc
Q 047584 826 PSVGQLPSLKHLVVCGMS 843 (883)
Q Consensus 826 ~~l~~lp~L~~L~L~~~~ 843 (883)
|.+..+++|++|+|++|+
T Consensus 290 p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 290 PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCTTTSCEEEEEECTTCT
T ss_pred hhHhhCCCCCEEeccCCC
Confidence 779999999999999883
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=2.7e-15 Score=157.96 Aligned_cols=202 Identities=18% Similarity=0.153 Sum_probs=125.5
Q ss_pred CceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCcccccc-ccccCCCccEEecCCCCchhhch-hhhcCcCCCCcee
Q 047584 601 QRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLKKLC-ADMGNLIKLHHLK 677 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp-~~i~~L~~L~~L~ 677 (883)
++|++|++++|.++.++. .+.++++|++|++++|.++.+|. .+.++++|++|++++| .+..++ ..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 468888888888887765 67888888888888888887765 6788888888888885 444444 5688888888888
Q ss_pred cCCCCCccccCc-cCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEE
Q 047584 678 NSNTDSLEEMPL-GIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSL 756 (883)
Q Consensus 678 l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 756 (883)
+++|. +..++. .++.+++|++|. ++.+. +... .++..+..+++|+.|++
T Consensus 107 l~~n~-l~~~~~~~~~~l~~L~~L~---l~~n~---------------------l~~~-----~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 107 AVETN-LASLENFPIGHLKTLKELN---VAHNL---------------------IQSF-----KLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEE---CCSSC---------------------CCCC-----CCCGGGGGCTTCCEEEC
T ss_pred CCCCC-ccccCchhcccCCCCCEEE---CcCCc---------------------ccee-----cCchhhccCCCCCEEEC
Confidence 88887 555543 466666666552 11110 0000 01233455666777777
Q ss_pred EeccCCCCCCCcchhhHHhhhcCCCCCCCcc-eEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcc
Q 047584 757 NWTCSTDGSSSREAETEMGVLDVLKPHANLE-QFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLPSL 834 (883)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L 834 (883)
++|...... ...+..+..++.|. .|++++|.+..+|..... ..+|+.|+|++|......+ .+..+++|
T Consensus 157 s~N~l~~~~--------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 157 SSNKIQSIY--------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp CSSCCCEEC--------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred CCCCCCcCC--------HHHhhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhcccccc
Confidence 664221100 01111122222333 677777777766655433 4578888888876433222 35677888
Q ss_pred cceeccCcc
Q 047584 835 KHLVVCGMS 843 (883)
Q Consensus 835 ~~L~L~~~~ 843 (883)
+.|+|++|+
T Consensus 227 ~~L~l~~N~ 235 (276)
T 2z62_A 227 QKIWLHTNP 235 (276)
T ss_dssp CEEECCSSC
T ss_pred cEEEccCCc
Confidence 888887763
No 76
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.60 E-value=7.6e-15 Score=165.55 Aligned_cols=245 Identities=18% Similarity=0.175 Sum_probs=107.2
Q ss_pred hcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCce
Q 047584 597 LLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHL 676 (883)
Q Consensus 597 l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L 676 (883)
+.++++|++|++++|.++.+|..+ .+|++|++++|.++.+| .++++++|++|++++| .+..+|.. .++|++|
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L 220 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL---PLSLESI 220 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC---CTTCCEE
T ss_pred cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC---cCcccEE
Confidence 445556666666666555555432 35556666666555555 3555666666666553 33344432 1355555
Q ss_pred ecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEE
Q 047584 677 KNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSL 756 (883)
Q Consensus 677 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 756 (883)
++++|. +..+| .++.+++|++|.. +.+....+.. .+++|+ .|.+.+..-. . ++. ..++|+.|++
T Consensus 221 ~l~~n~-l~~lp-~~~~l~~L~~L~l---~~N~l~~l~~--~~~~L~-~L~l~~N~l~-~----l~~---~~~~L~~L~l 284 (454)
T 1jl5_A 221 VAGNNI-LEELP-ELQNLPFLTTIYA---DNNLLKTLPD--LPPSLE-ALNVRDNYLT-D----LPE---LPQSLTFLDV 284 (454)
T ss_dssp ECCSSC-CSSCC-CCTTCTTCCEEEC---CSSCCSSCCS--CCTTCC-EEECCSSCCS-C----CCC---CCTTCCEEEC
T ss_pred ECcCCc-CCccc-ccCCCCCCCEEEC---CCCcCCcccc--cccccC-EEECCCCccc-c----cCc---ccCcCCEEEC
Confidence 655554 44555 3555555555522 1111011111 112333 3333221100 0 000 1134555555
Q ss_pred EeccCCCCCCCcch----hhHHhhhcCCCC-CCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCc
Q 047584 757 NWTCSTDGSSSREA----ETEMGVLDVLKP-HANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQL 831 (883)
Q Consensus 757 ~~~~~~~~~~~~~~----~~~~~~l~~l~~-~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 831 (883)
++|.....+..... ......+..+.. +++|+.|++++|.+..+|.+ +++|+.|+|++|.. +.+|. .+
T Consensus 285 s~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~-----~~~L~~L~L~~N~l-~~lp~--~l 356 (454)
T 1jl5_A 285 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL-----PPRLERLIASFNHL-AEVPE--LP 356 (454)
T ss_dssp CSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCC-SCCCC--CC
T ss_pred cCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc-----CCcCCEEECCCCcc-ccccc--hh
Confidence 44321110000000 000000111112 25788888888887777753 57888888888854 45666 47
Q ss_pred CcccceeccCcccce--ecCCCccCC-------CCCCCCCCcceeeccccc
Q 047584 832 PSLKHLVVCGMSSVR--RLDPEFYGK-------DASIPFPYLETLRFEDME 873 (883)
Q Consensus 832 p~L~~L~L~~~~~l~--~i~~~~~~~-------~~~~~~p~L~~L~l~~~~ 873 (883)
++|++|++++|.-.+ .+|..+..- .....+++|+.|++++++
T Consensus 357 ~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred hhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 888889888874333 344433210 000112778888887643
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=5.7e-16 Score=176.54 Aligned_cols=223 Identities=14% Similarity=0.134 Sum_probs=161.1
Q ss_pred CcCccccC----CCcccEEeccCCCccccc-cccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCc
Q 047584 615 ELPDSVGD----LRYLRYLNLSGTVIRSLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPL 689 (883)
Q Consensus 615 ~lp~~i~~----l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~ 689 (883)
.+|..+.. +++|++|+|++|.++.+| ..++++++|++|+|++|. +...+. +..+++|++|++++|. +..+|.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~ 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC
Confidence 34544444 448999999999999885 689999999999999964 554444 8999999999999997 777764
Q ss_pred cCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcc
Q 047584 690 GIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSRE 769 (883)
Q Consensus 690 ~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 769 (883)
. ++|++|. ++.+....+. ...+++|+ .|.+.+.. .....+..+..+++|+.|++++|....
T Consensus 98 ~----~~L~~L~---L~~N~l~~~~-~~~l~~L~-~L~L~~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~------ 158 (487)
T 3oja_A 98 G----PSIETLH---AANNNISRVS-CSRGQGKK-NIYLANNK----ITMLRDLDEGCRSRVQYLDLKLNEIDT------ 158 (487)
T ss_dssp C----TTCCEEE---CCSSCCCCEE-ECCCSSCE-EEECCSSC----CCSGGGBCGGGGSSEEEEECTTSCCCE------
T ss_pred C----CCcCEEE---CcCCcCCCCC-ccccCCCC-EEECCCCC----CCCCCchhhcCCCCCCEEECCCCCCCC------
Confidence 3 6777773 3222211111 12345565 56655422 223344567788999999998753221
Q ss_pred hhhHHhhhcCCC-CCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeccCcccceec
Q 047584 770 AETEMGVLDVLK-PHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKHLVVCGMSSVRRL 848 (883)
Q Consensus 770 ~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~i 848 (883)
..+..+. .+++|+.|++++|.+..+|.... +++|+.|+|++|......|.++.+++|+.|+|++| .+..+
T Consensus 159 -----~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~l 229 (487)
T 3oja_A 159 -----VNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI 229 (487)
T ss_dssp -----EEGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEE
T ss_pred -----cChHHHhhhCCcccEEecCCCcccccccccc---CCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC-cCccc
Confidence 1122232 46899999999999888876552 89999999999976655568889999999999987 67778
Q ss_pred CCCccCCCCCCCCCCcceeecccccc
Q 047584 849 DPEFYGKDASIPFPYLETLRFEDMEE 874 (883)
Q Consensus 849 ~~~~~~~~~~~~~p~L~~L~l~~~~~ 874 (883)
|..+.. +++|+.|++++++-
T Consensus 230 p~~l~~------l~~L~~L~l~~N~l 249 (487)
T 3oja_A 230 EKALRF------SQNLEHFDLRGNGF 249 (487)
T ss_dssp CTTCCC------CTTCCEEECTTCCB
T ss_pred chhhcc------CCCCCEEEcCCCCC
Confidence 876543 89999999998764
No 78
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.60 E-value=1.5e-15 Score=171.27 Aligned_cols=225 Identities=18% Similarity=0.109 Sum_probs=113.9
Q ss_pred CCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCC-CcCccccCCCcc-------------cEEeccCC
Q 047584 569 DIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIP-ELPDSVGDLRYL-------------RYLNLSGT 634 (883)
Q Consensus 569 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L-------------~~L~L~~~ 634 (883)
+.++|+.+.+..+. + ..++..+.++++|++|++++|.+. .+|..++++.+| ++|++++|
T Consensus 9 ~~~~L~~L~l~~n~------l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 9 SNTFLQEPLRHSSN------L-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccccchhhhcccCc------h-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 45677777655443 3 566777788999999999998875 678888888875 88999999
Q ss_pred CccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcc
Q 047584 635 VIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLR 714 (883)
Q Consensus 635 ~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~ 714 (883)
.++.+|.. .++|++|++++| .+..+|.. +++|++|++++|. +..+|... ++|++| ..+.+....+.
T Consensus 82 ~l~~lp~~---~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~~---~~L~~L---~L~~n~l~~lp 147 (454)
T 1jl5_A 82 GLSSLPEL---PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNN-LKALSDLP---PLLEYL---GVSNNQLEKLP 147 (454)
T ss_dssp CCSCCCSC---CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSC-CSCCCSCC---TTCCEE---ECCSSCCSSCC
T ss_pred ccccCCCC---cCCCCEEEccCC-cCCccccc---cCCCcEEECCCCc-cCcccCCC---CCCCEE---ECcCCCCCCCc
Confidence 98888873 468899999884 56667753 3677777777765 45444211 345544 22222222233
Q ss_pred cccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEec
Q 047584 715 ELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGY 794 (883)
Q Consensus 715 ~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 794 (883)
.+.++++|+ .|.+.+..-. . ++. ...+|++|++++|... .+..+..+++|+.|++++|
T Consensus 148 ~~~~l~~L~-~L~l~~N~l~-~----lp~---~~~~L~~L~L~~n~l~-------------~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 148 ELQNSSFLK-IIDVDNNSLK-K----LPD---LPPSLEFIAAGNNQLE-------------ELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp CCTTCTTCC-EEECCSSCCS-C----CCC---CCTTCCEEECCSSCCS-------------SCCCCTTCTTCCEEECCSS
T ss_pred ccCCCCCCC-EEECCCCcCc-c----cCC---CcccccEEECcCCcCC-------------cCccccCCCCCCEEECCCC
Confidence 455666665 5555432111 0 111 1135666666553211 0122444555555555555
Q ss_pred CCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeccCc
Q 047584 795 GGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKHLVVCGM 842 (883)
Q Consensus 795 ~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~ 842 (883)
.+..+|.. .++|+.|++++|... .+|.++.+++|++|++++|
T Consensus 206 ~l~~l~~~-----~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 206 SLKKLPDL-----PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp CCSSCCCC-----CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSS
T ss_pred cCCcCCCC-----cCcccEEECcCCcCC-cccccCCCCCCCEEECCCC
Confidence 55554432 235555555555332 4455555555555555544
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=1.3e-14 Score=152.78 Aligned_cols=215 Identities=17% Similarity=0.184 Sum_probs=154.9
Q ss_pred EEeeCCCCCCCcCccccCCCcccEEeccCCCcccccc-ccccCCCccEEecCCCCchhhchh-hhcCcCCCCceecCCCC
Q 047584 605 VFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 605 ~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~ 682 (883)
..+..+..+..+|..+. .+|++|++++|.++.+|. .+.++++|++|++++| .+..+|. .+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc
Confidence 45566677888888765 589999999999998876 7899999999999996 5666654 68999999999999998
Q ss_pred CccccC-ccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccC
Q 047584 683 SLEEMP-LGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCS 761 (883)
Q Consensus 683 ~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 761 (883)
+..++ ..+.++++|++|.. ..+ ++..+ ....+..+++|+.|++++|..
T Consensus 88 -l~~~~~~~~~~l~~L~~L~l---~~n---------~l~~~------------------~~~~~~~l~~L~~L~l~~n~l 136 (276)
T 2z62_A 88 -IQSLALGAFSGLSSLQKLVA---VET---------NLASL------------------ENFPIGHLKTLKELNVAHNLI 136 (276)
T ss_dssp -CCEECTTTTTTCTTCCEEEC---TTS---------CCCCS------------------TTCCCTTCTTCCEEECCSSCC
T ss_pred -cCccChhhhcCCccccEEEC---CCC---------Ccccc------------------CchhcccCCCCCEEECcCCcc
Confidence 56555 45777777777621 111 00011 111266778999999987532
Q ss_pred CCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCc-CCCcCCCCCee----EEEEecCCCCCCCCCCCCcCcccc
Q 047584 762 TDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPT-WLGDSLFSNLV----TLKFENCGICTALPSVGQLPSLKH 836 (883)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~----~L~L~~~~~~~~l~~l~~lp~L~~ 836 (883)
... .....+..+++|+.|++++|.+..+|. .+.. +++|+ .|++++|......+.....++|+.
T Consensus 137 ~~~----------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~ 204 (276)
T 2z62_A 137 QSF----------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV--LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204 (276)
T ss_dssp CCC----------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHH--HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred cee----------cCchhhccCCCCCEEECCCCCCCcCCHHHhhh--hhhccccceeeecCCCcccccCccccCCCcccE
Confidence 210 122345667899999999999887653 3322 45555 899999976544455555679999
Q ss_pred eeccCcccceecCCCccCCCCCCCCCCcceeeccc
Q 047584 837 LVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFED 871 (883)
Q Consensus 837 L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~ 871 (883)
|+|++| .++.++...+. .+++|+.|++++
T Consensus 205 L~L~~n-~l~~~~~~~~~-----~l~~L~~L~l~~ 233 (276)
T 2z62_A 205 LALDTN-QLKSVPDGIFD-----RLTSLQKIWLHT 233 (276)
T ss_dssp EECCSS-CCSCCCTTTTT-----TCCSCCEEECCS
T ss_pred EECCCC-ceeecCHhHhc-----ccccccEEEccC
Confidence 999988 57777765443 499999999994
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=1.7e-14 Score=151.30 Aligned_cols=202 Identities=19% Similarity=0.222 Sum_probs=121.6
Q ss_pred CCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchh-hhcCcCCCCcee
Q 047584 599 KLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLK 677 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~ 677 (883)
.+++|+.|++++|.+..++ .+..+++|++|++++|.++.++ .+.++++|++|++++| .+..+|. .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEE
Confidence 5666777777777766654 3666777777777777776653 5667777777777764 4444443 356677777777
Q ss_pred cCCCCCccccCcc-CCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEE
Q 047584 678 NSNTDSLEEMPLG-IVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSL 756 (883)
Q Consensus 678 l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 756 (883)
+++|. +..+|.. ++.+++|++|. ...+ .+ .. ..+..+..+++|+.|++
T Consensus 116 L~~n~-l~~~~~~~~~~l~~L~~L~---L~~n------------~l---------~~------~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 116 LVENQ-LQSLPDGVFDKLTNLTYLN---LAHN------------QL---------QS------LPKGVFDKLTNLTELDL 164 (272)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEE---CCSS------------CC---------CC------CCTTTTTTCTTCCEEEC
T ss_pred CCCCc-CCccCHHHhccCCCCCEEE---CCCC------------cc---------Cc------cCHHHhccCccCCEEEC
Confidence 77766 5555443 45555555551 1100 00 00 01122445667777777
Q ss_pred EeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCcccc
Q 047584 757 NWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKH 836 (883)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~ 836 (883)
++|.... .....+..+++|+.|++++|.+..+|.... ..+++|+.|+|++|+.. +.+|+|+.
T Consensus 165 ~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~~------~~~~~l~~ 226 (272)
T 3rfs_A 165 SYNQLQS-----------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVF-DRLTSLQYIWLHDNPWD------CTCPGIRY 226 (272)
T ss_dssp CSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCBC------CCTTTTHH
T ss_pred CCCCcCc-----------cCHHHhcCCccCCEEECCCCcCCccCHHHH-hCCcCCCEEEccCCCcc------ccCcHHHH
Confidence 6642211 011234556788888888888777765432 23889999999988543 45678888
Q ss_pred eeccCcccceecCCCc
Q 047584 837 LVVCGMSSVRRLDPEF 852 (883)
Q Consensus 837 L~L~~~~~l~~i~~~~ 852 (883)
|++..|...+.+|..+
T Consensus 227 l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 227 LSEWINKHSGVVRNSA 242 (272)
T ss_dssp HHHHHHHTGGGBBCTT
T ss_pred HHHHHHhCCCcccCcc
Confidence 8888776556666543
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=2.6e-16 Score=171.07 Aligned_cols=207 Identities=15% Similarity=0.109 Sum_probs=134.5
Q ss_pred hcCC--CceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccc--cccccccCCCccEEecCCCCchhhchhhhcCcCC
Q 047584 597 LLKL--QRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRS--LPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIK 672 (883)
Q Consensus 597 l~~l--~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~ 672 (883)
+..+ +++++|++++|.+...+..+..+++|++|++++|.++. +|..+.++++|++|++++|......|..+..+++
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 3455 88999999999988887778889999999999999874 7888999999999999998655577888999999
Q ss_pred CCceecCCCCCcc--ccCccCCCCCCCCccCceEeCcCCCC-Ccccccccc-cCCCeeEEeccC-CCCCccchHhhhcCC
Q 047584 673 LHHLKNSNTDSLE--EMPLGIVRLTCLQTLCNFVVAKDSGS-GLRELKSLT-HLERTLKISKLE-NVKCVGDAMEAQMDG 747 (883)
Q Consensus 673 L~~L~l~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~~~~~-~~~~l~~L~-~L~~~L~i~~l~-~~~~~~~~~~~~l~~ 747 (883)
|++|++++|..+. .+|..+..+++|++|....+....+. ....+.+++ +|+ .|.+.+.. .+ ....++..+..
T Consensus 144 L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~-~L~l~~~~~~~--~~~~l~~~~~~ 220 (336)
T 2ast_B 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT-QLNLSGYRKNL--QKSDLSTLVRR 220 (336)
T ss_dssp CSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC-EEECCSCGGGS--CHHHHHHHHHH
T ss_pred CCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC-EEEeCCCcccC--CHHHHHHHHhh
Confidence 9999999994355 35655677777777733222111111 122345556 666 56655432 11 11334444556
Q ss_pred CCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCc---CCCcCCCCCeeEEEEecC
Q 047584 748 KKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPT---WLGDSLFSNLVTLKFENC 819 (883)
Q Consensus 748 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~---~~~~~~l~~L~~L~L~~~ 819 (883)
+++|+.|++++|... ....+..+..+++|+.|++++|... .|. .+. .+++|+.|+|++|
T Consensus 221 ~~~L~~L~l~~~~~l----------~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~l~--~~~~L~~L~l~~~ 282 (336)
T 2ast_B 221 CPNLVHLDLSDSVML----------KNDCFQEFFQLNYLQHLSLSRCYDI-IPETLLELG--EIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCSEEECTTCTTC----------CGGGGGGGGGCTTCCEEECTTCTTC-CGGGGGGGG--GCTTCCEEECTTS
T ss_pred CCCCCEEeCCCCCcC----------CHHHHHHHhCCCCCCEeeCCCCCCC-CHHHHHHHh--cCCCCCEEeccCc
Confidence 677777777654211 0112333444567777777666411 121 232 2667777777766
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=155.85 Aligned_cols=204 Identities=16% Similarity=0.130 Sum_probs=126.6
Q ss_pred CCCceeEEeeCCCCCCC-cCccc--cCCCcccEEeccCCCcccc-c----cccccCCCccEEecCCCCchhhchhhhcCc
Q 047584 599 KLQRLRVFSLRGYCIPE-LPDSV--GDLRYLRYLNLSGTVIRSL-P----ESVNKLYNLHSLLLEDCDRLKKLCADMGNL 670 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~-lp~~i--~~l~~L~~L~L~~~~i~~l-p----~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L 670 (883)
.+++|++|++++|.+.. .|..+ ..+.+|++|+|++|.++.. | ..+..+++|++|++++|......|..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45668888888888764 45666 7888888888888888752 2 234568888888888854433334567888
Q ss_pred CCCCceecCCCCCccc--cC--ccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcC
Q 047584 671 IKLHHLKNSNTDSLEE--MP--LGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMD 746 (883)
Q Consensus 671 ~~L~~L~l~~~~~~~~--~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 746 (883)
++|++|++++|..... ++ ..++.+++|++|.. .+.. +..........+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L--------------------------s~N~-l~~l~~~~~~l~~ 221 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL--------------------------RNTG-METPTGVCAALAA 221 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC--------------------------CSSC-CCCHHHHHHHHHH
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC--------------------------CCCC-CCchHHHHHHHHh
Confidence 8888888888862211 22 22345556655521 1100 0001111111235
Q ss_pred CCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC
Q 047584 747 GKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP 826 (883)
Q Consensus 747 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 826 (883)
.+++|++|++++|......+ ..+..+..+++|++|++++|.+..+|.++ +++|+.|+|++|.. ..+|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p--------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l-~~~~ 288 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVN--------PSAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRL-NRAP 288 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCC--------SCCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCC-CSCC
T ss_pred cCCCCCEEECCCCCCCccch--------hhHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcC-CCCc
Confidence 56778888887753221100 01222333468888888888887777765 36888888888754 3456
Q ss_pred CCCCcCcccceeccCc
Q 047584 827 SVGQLPSLKHLVVCGM 842 (883)
Q Consensus 827 ~l~~lp~L~~L~L~~~ 842 (883)
.+..+|+|+.|+|++|
T Consensus 289 ~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 289 QPDELPEVDNLTLDGN 304 (310)
T ss_dssp CTTSCCCCSCEECSST
T ss_pred hhhhCCCccEEECcCC
Confidence 6677788888888877
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=9.2e-17 Score=178.14 Aligned_cols=239 Identities=19% Similarity=0.161 Sum_probs=151.0
Q ss_pred hhhhcCCCceeEEeeCCCCCCC-----cCccccCCCcccEEeccCCCcc----cccccc-------ccCCCccEEecCCC
Q 047584 594 LPKLLKLQRLRVFSLRGYCIPE-----LPDSVGDLRYLRYLNLSGTVIR----SLPESV-------NKLYNLHSLLLEDC 657 (883)
Q Consensus 594 ~~~l~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~~~i~----~lp~~i-------~~l~~L~~L~l~~c 657 (883)
+..+..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3444578999999999999875 4455788999999999997655 335444 78999999999996
Q ss_pred Cchh----hchhhhcCcCCCCceecCCCCCcc-----ccCccCCCC---------CCCCccCceEeCcCCCCCc----cc
Q 047584 658 DRLK----KLCADMGNLIKLHHLKNSNTDSLE-----EMPLGIVRL---------TCLQTLCNFVVAKDSGSGL----RE 715 (883)
Q Consensus 658 ~~l~----~lp~~i~~L~~L~~L~l~~~~~~~-----~~p~~i~~L---------~~L~~L~~~~~~~~~~~~~----~~ 715 (883)
.... .+|..+..+++|++|++++|. +. .++..+..+ ++|++|.... +......+ ..
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENGSMKEWAKT 182 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC-CCCCcHHHHHHHHH
Confidence 5433 478889999999999999998 43 222233333 6676663221 11111122 24
Q ss_pred ccccccCCCeeEEeccCCCCCccc-hHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEec
Q 047584 716 LKSLTHLERTLKISKLENVKCVGD-AMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGY 794 (883)
Q Consensus 716 l~~L~~L~~~L~i~~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 794 (883)
+.++++|+ .|.+.+..-...... ..+..+..+++|+.|+|++|... ..........+..+++|+.|+|++|
T Consensus 183 l~~~~~L~-~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~-------~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 183 FQSHRLLH-TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT-------HLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp HHHCTTCC-EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH-------HHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHhCCCcC-EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC-------cHHHHHHHHHHccCCCcCEEECCCC
Confidence 45666776 666654321100000 12226677788888888775211 0011223345566678888888888
Q ss_pred CCCC-----CCcCCCcCCCCCeeEEEEecCCCCC----CCC-CC-CCcCcccceeccCc
Q 047584 795 GGMK-----FPTWLGDSLFSNLVTLKFENCGICT----ALP-SV-GQLPSLKHLVVCGM 842 (883)
Q Consensus 795 ~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~----~l~-~l-~~lp~L~~L~L~~~ 842 (883)
.+.. +|.++....+++|+.|+|++|.... .+| .+ .++|+|++|+|++|
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 7654 2444321226788888888886544 254 34 45788888888877
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=5.4e-14 Score=153.34 Aligned_cols=101 Identities=17% Similarity=0.079 Sum_probs=66.2
Q ss_pred CCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEe-cCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCC
Q 047584 749 KNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKG-YGGMKFPTWLGDSLFSNLVTLKFENCGICTALPS 827 (883)
Q Consensus 749 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~-~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~ 827 (883)
..|+.|+++.|... .+....-...+|+.|.+.+ |....+|..... .+++|+.|+|++|. ++.+|.
T Consensus 154 ~~l~~L~L~~N~i~------------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~-~l~~L~~LdLs~N~-l~~lp~ 219 (350)
T 4ay9_X 154 FESVILWLNKNGIQ------------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFH-GASGPVILDISRTR-IHSLPS 219 (350)
T ss_dssp SSCEEEECCSSCCC------------EECTTSSTTEEEEEEECTTCTTCCCCCTTTTT-TEECCSEEECTTSC-CCCCCS
T ss_pred hhhhhhcccccccc------------CCChhhccccchhHHhhccCCcccCCCHHHhc-cCcccchhhcCCCC-cCccCh
Confidence 45778888764221 1112222345788888864 667778765432 38899999999884 555663
Q ss_pred CCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccc
Q 047584 828 VGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFED 871 (883)
Q Consensus 828 l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~ 871 (883)
+.+.+|+.|.+.++..++.+|. + ..|++|+.+++.+
T Consensus 220 -~~~~~L~~L~~l~~~~l~~lP~-l------~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 -YGLENLKKLRARSTYNLKKLPT-L------EKLVALMEASLTY 255 (350)
T ss_dssp -SSCTTCCEEECTTCTTCCCCCC-T------TTCCSCCEEECSC
T ss_pred -hhhccchHhhhccCCCcCcCCC-c------hhCcChhhCcCCC
Confidence 3366777777777777888873 2 3489999998864
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=5.9e-14 Score=149.98 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=90.8
Q ss_pred CCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCC
Q 047584 569 DIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYN 648 (883)
Q Consensus 569 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 648 (883)
++++|+.|.+.++. + ..++.+..+++|++|+|++|.+..++. +..+++|++|++++|.++.+| .+.++++
T Consensus 39 ~l~~L~~L~l~~~~------i--~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 39 DLDGITTLSAFGTG------V--TTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQS 108 (308)
T ss_dssp HHHTCCEEECTTSC------C--CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred HcCCcCEEEeeCCC------c--cCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCC
Confidence 45667777654433 1 112345678899999999999988877 889999999999999988876 6888999
Q ss_pred ccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCcc
Q 047584 649 LHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTL 700 (883)
Q Consensus 649 L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 700 (883)
|++|++++| .+..+|. +..+++|++|++++|. +..+|. ++.+++|+.|
T Consensus 109 L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L 156 (308)
T 1h6u_A 109 IKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYL 156 (308)
T ss_dssp CCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEE
T ss_pred CCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEE
Confidence 999999985 5666765 8889999999999887 666664 6666666666
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=3.4e-14 Score=150.30 Aligned_cols=199 Identities=19% Similarity=0.130 Sum_probs=144.1
Q ss_pred cCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCccccccccccC
Q 047584 568 YDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSLPESVNKL 646 (883)
Q Consensus 568 ~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~l 646 (883)
.++++++++.+.... + ..++..+ .+.|++|+|++|.+..+ |..+..+++|++|+|++|.++.+|.. ..+
T Consensus 7 ~~l~~l~~l~~~~~~------l-~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l 76 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN------L-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTL 76 (290)
T ss_dssp ECSTTCCEEECTTSC------C-SSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCC
T ss_pred cccCCccEEECCCCC------C-CcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCC
Confidence 455666666554322 1 1222233 26789999999999877 46789999999999999999988765 789
Q ss_pred CCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCc-cCCCCCCCCccCceEeCcCCCCCcccccccccCCCe
Q 047584 647 YNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPL-GIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERT 725 (883)
Q Consensus 647 ~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 725 (883)
++|++|++++ +.+..+|..+..+++|++|++++|. +..+|+ .++.+++|++|. .+.+ ++.
T Consensus 77 ~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~---L~~N------------~l~-- 137 (290)
T 1p9a_G 77 PVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELY---LKGN------------ELK-- 137 (290)
T ss_dssp TTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEE---CTTS------------CCC--
T ss_pred CcCCEEECCC-CcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEE---CCCC------------CCC--
Confidence 9999999998 5678899889999999999999998 777764 477777777762 1111 010
Q ss_pred eEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCc
Q 047584 726 LKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGD 805 (883)
Q Consensus 726 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 805 (883)
.+ .+..+..+++|+.|+++.|..... ....+..+++|+.|++++|.+..+|.++..
T Consensus 138 -------~~------~~~~~~~l~~L~~L~L~~N~l~~l-----------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~ 193 (290)
T 1p9a_G 138 -------TL------PPGLLTPTPKLEKLSLANNNLTEL-----------PAGLLNGLENLDTLLLQENSLYTIPKGFFG 193 (290)
T ss_dssp -------CC------CTTTTTTCTTCCEEECTTSCCSCC-----------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred -------cc------ChhhcccccCCCEEECCCCcCCcc-----------CHHHhcCcCCCCEEECCCCcCCccChhhcc
Confidence 00 112355678888998877532210 112345678999999999999999998865
Q ss_pred CCCCCeeEEEEecCCC
Q 047584 806 SLFSNLVTLKFENCGI 821 (883)
Q Consensus 806 ~~l~~L~~L~L~~~~~ 821 (883)
+++|+.|+|++|+.
T Consensus 194 --~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 194 --SHLLPFAFLHGNPW 207 (290)
T ss_dssp --TCCCSEEECCSCCB
T ss_pred --cccCCeEEeCCCCc
Confidence 78999999999974
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.50 E-value=1.9e-16 Score=180.23 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=39.3
Q ss_pred CCcceEEEEecCCCC-----CCcCCCcCCCCCeeEEEEecCCCCCC-CCCCC-----CcCcccceeccCcccce-----e
Q 047584 784 ANLEQFCIKGYGGMK-----FPTWLGDSLFSNLVTLKFENCGICTA-LPSVG-----QLPSLKHLVVCGMSSVR-----R 847 (883)
Q Consensus 784 ~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~-----~lp~L~~L~L~~~~~l~-----~ 847 (883)
++|++|++++|.+.. +|.++.. +++|++|+|++|..... +..+. ..++|+.|+|++| .++ .
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 389 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQ--NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSS 389 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHH--CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhh--CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHH
Confidence 466666666665442 2333322 46666666666643211 11111 1456666666666 233 2
Q ss_pred cCCCccCCCCCCCCCCcceeecccc
Q 047584 848 LDPEFYGKDASIPFPYLETLRFEDM 872 (883)
Q Consensus 848 i~~~~~~~~~~~~~p~L~~L~l~~~ 872 (883)
++..+. .+++|++|+++++
T Consensus 390 l~~~l~------~~~~L~~L~l~~N 408 (461)
T 1z7x_W 390 LAATLL------ANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHH------HCCCCCEEECCSS
T ss_pred HHHHHH------hCCCccEEECCCC
Confidence 332222 2566666666654
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.49 E-value=2.6e-16 Score=179.15 Aligned_cols=308 Identities=17% Similarity=0.131 Sum_probs=150.3
Q ss_pred CCeeEEEeEecCCcccc--cc-ccccCCCCceEeeeccccCCCCCCCCCCchhhhc-CCC----ceeEEeeCCCCCC---
Q 047584 546 RNLRHLSYIRGDYDGVQ--RF-GDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLL-KLQ----RLRVFSLRGYCIP--- 614 (883)
Q Consensus 546 ~~~r~l~~~~~~~~~~~--~~-~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~-~l~----~Lr~L~L~~~~~~--- 614 (883)
..+++|.+..+...... .+ ..+..+++|++|.+.++. +....+..++ .++ +|++|+|++|.+.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE------LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC------CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc------CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 34566666554432110 11 123445666666554322 2222233333 333 5777777777665
Q ss_pred --CcCccccCCCcccEEeccCCCcccc-ccccc-----cCCCccEEecCCCCchh----hchhhhcCcCCCCceecCCCC
Q 047584 615 --ELPDSVGDLRYLRYLNLSGTVIRSL-PESVN-----KLYNLHSLLLEDCDRLK----KLCADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 615 --~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~-----~l~~L~~L~l~~c~~l~----~lp~~i~~L~~L~~L~l~~~~ 682 (883)
.+|..+..+++|++|++++|.++.. +..+. .+.+|++|++++|.... .++..+..+++|++|++++|.
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 2455666667777777777666532 22221 24467777777653222 345555666777777777665
Q ss_pred Ccccc-CccCC-----CCCCCCccCceEeCcCC--CC----CcccccccccCCCeeEEeccCCCCCccchH-hhhcCCCC
Q 047584 683 SLEEM-PLGIV-----RLTCLQTLCNFVVAKDS--GS----GLRELKSLTHLERTLKISKLENVKCVGDAM-EAQMDGKK 749 (883)
Q Consensus 683 ~~~~~-p~~i~-----~L~~L~~L~~~~~~~~~--~~----~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~-~~~l~~~~ 749 (883)
+... +..+. .+++|++| ..+.+. .. ....+.++++|+ .|.+.+..-.......+ ......++
T Consensus 182 -i~~~~~~~l~~~l~~~~~~L~~L---~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~l~~~~~~~l~~~~~~~~~ 256 (461)
T 1z7x_W 182 -INEAGVRVLCQGLKDSPCQLEAL---KLESCGVTSDNCRDLCGIVASKASLR-ELALGSNKLGDVGMAELCPGLLHPSS 256 (461)
T ss_dssp -CHHHHHHHHHHHHHHSCCCCCEE---ECTTSCCBTTHHHHHHHHHHHCTTCC-EEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred -cchHHHHHHHHHHhcCCCCceEE---EccCCCCcHHHHHHHHHHHHhCCCcc-EEeccCCcCChHHHHHHHHHHhcCCC
Confidence 3221 11111 23355555 222221 11 122334556666 55554421100000001 22233567
Q ss_pred CCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCC-----CCcCCCcCCCCCeeEEEEecCCCCCC
Q 047584 750 NLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMK-----FPTWLGDSLFSNLVTLKFENCGICTA 824 (883)
Q Consensus 750 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~~ 824 (883)
+|++|++++|... ..........+..+++|++|++++|.+.. ++..+.. ..++|++|+|++|.....
T Consensus 257 ~L~~L~L~~n~l~-------~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 257 RLRTLWIWECGIT-------AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE-PGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp CCCEEECTTSCCC-------HHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS-TTCCCCEEECTTSCCBGG
T ss_pred CceEEECcCCCCC-------HHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc-CCccceeeEcCCCCCchH
Confidence 7777777664211 01111122334445778888887776532 1111111 236888888888864332
Q ss_pred ----CC-CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccccc
Q 047584 825 ----LP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 825 ----l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
++ .+..+++|++|+|++| .+...+.......-....++|+.|++++|.
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 22 4556788888888887 444332111110000126799999998873
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=8.5e-16 Score=170.31 Aligned_cols=259 Identities=15% Similarity=0.126 Sum_probs=173.7
Q ss_pred cccCCCCceEeeeccccCCCCCCCCCCchh----hhcCCCceeEEeeCCCCCCC----cCccc-------cCCCcccEEe
Q 047584 566 DLYDIQHLRTFLPVMLTNSGPCYLAPSILP----KLLKLQRLRVFSLRGYCIPE----LPDSV-------GDLRYLRYLN 630 (883)
Q Consensus 566 ~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~----~l~~l~~Lr~L~L~~~~~~~----lp~~i-------~~l~~L~~L~ 630 (883)
.+..+++|+.|.+.++. +....+. .+.++++|++|+|++|.+.. +|..+ ..+++|++|+
T Consensus 27 ~l~~~~~L~~L~L~~n~------i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNT------IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHHHCSCCCEEECTTSE------ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHhcCCCccEEECCCCC------CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 44567888988876543 3333222 24489999999999987653 34443 7899999999
Q ss_pred ccCCCccc-----cccccccCCCccEEecCCCCchh----hchhhhcCc---------CCCCceecCCCCCcc--ccC--
Q 047584 631 LSGTVIRS-----LPESVNKLYNLHSLLLEDCDRLK----KLCADMGNL---------IKLHHLKNSNTDSLE--EMP-- 688 (883)
Q Consensus 631 L~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~l~----~lp~~i~~L---------~~L~~L~l~~~~~~~--~~p-- 688 (883)
|++|.+.. +|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|. +. .+|
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l 179 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEW 179 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHH
Confidence 99999986 78899999999999999976432 334445555 999999999998 43 444
Q ss_pred -ccCCCCCCCCccCceEeCcCCCC------Ccc-cccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEecc
Q 047584 689 -LGIVRLTCLQTLCNFVVAKDSGS------GLR-ELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTC 760 (883)
Q Consensus 689 -~~i~~L~~L~~L~~~~~~~~~~~------~~~-~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 760 (883)
..+..+++|++|. +..+... .+. .+.++++|+ .|.+.+..-.......++..+..+++|+.|+|++|.
T Consensus 180 ~~~l~~~~~L~~L~---L~~n~l~~~g~~~l~~~~l~~~~~L~-~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 180 AKTFQSHRLLHTVK---MVQNGIRPEGIEHLLLEGLAYCQELK-VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHCTTCCEEE---CCSSCCCHHHHHHHHHTTGGGCTTCC-EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHhCCCcCEEE---CcCCCCCHhHHHHHHHHHhhcCCCcc-EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 3566777787773 3322211 122 566778887 777765321000014456678889999999998763
Q ss_pred CCCCCCCcchhhHHhhhcCC--CCCCCcceEEEEecCCCC-----CCcCCCcCCCCCeeEEEEecCCCCCCCC---C-CC
Q 047584 761 STDGSSSREAETEMGVLDVL--KPHANLEQFCIKGYGGMK-----FPTWLGDSLFSNLVTLKFENCGICTALP---S-VG 829 (883)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l--~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~~l~---~-l~ 829 (883)
.. ..........+ ..+++|+.|+|++|.+.. +|.++.. .+++|++|+|++|+.....+ . ..
T Consensus 256 i~-------~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~-~l~~L~~L~l~~N~l~~~~~~~~~l~~ 327 (386)
T 2ca6_A 256 LS-------ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE-KMPDLLFLELNGNRFSEEDDVVDEIRE 327 (386)
T ss_dssp CC-------HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH-HCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred Cc-------hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh-cCCCceEEEccCCcCCcchhHHHHHHH
Confidence 22 11111223344 347899999999999887 7776632 37999999999997654442 1 22
Q ss_pred CcCcccceeccCcc
Q 047584 830 QLPSLKHLVVCGMS 843 (883)
Q Consensus 830 ~lp~L~~L~L~~~~ 843 (883)
.+|.++.+.+....
T Consensus 328 ~l~~~~~~~l~~~d 341 (386)
T 2ca6_A 328 VFSTRGRGELDELD 341 (386)
T ss_dssp HHHHHTCCEECCCC
T ss_pred HhhhcCcchhhhcc
Confidence 36667666665543
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=6.6e-14 Score=162.66 Aligned_cols=172 Identities=19% Similarity=0.237 Sum_probs=119.8
Q ss_pred hcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCce
Q 047584 597 LLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHL 676 (883)
Q Consensus 597 l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L 676 (883)
+..+++|+.|++++|.+..+| .+..|++|++|+|++|.+..+|+ +..|++|++|+|++| .+..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 346788889999999888886 58888999999999999988877 888999999999885 566665 68888999999
Q ss_pred ecCCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEE
Q 047584 677 KNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSL 756 (883)
Q Consensus 677 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 756 (883)
++++|. +..+| .++.|++|+.| .+.+..- .. + ..+..+++|+.|+|
T Consensus 115 ~Ls~N~-l~~l~-~l~~l~~L~~L--------------------------~Ls~N~l-~~----l-~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 115 SLEHNG-ISDIN-GLVHLPQLESL--------------------------YLGNNKI-TD----I-TVLSRLTKLDTLSL 160 (605)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCSEE--------------------------ECCSSCC-CC----C-GGGGSCTTCSEEEC
T ss_pred EecCCC-CCCCc-cccCCCccCEE--------------------------ECCCCcc-CC----c-hhhcccCCCCEEEC
Confidence 998887 55543 35555555554 2211100 00 0 23556778888888
Q ss_pred EeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCC
Q 047584 757 NWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGIC 822 (883)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~ 822 (883)
+.|.... +..+..+++|+.|+|++|.+..+|. +. .+++|+.|+|++|+..
T Consensus 161 s~N~l~~-------------~~~l~~l~~L~~L~Ls~N~i~~l~~-l~--~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 161 EDNQISD-------------IVPLAGLTKLQNLYLSKNHISDLRA-LA--GLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCC-------------CGGGTTCTTCCEEECCSSCCCBCGG-GT--TCTTCSEEECCSEEEE
T ss_pred cCCcCCC-------------chhhccCCCCCEEECcCCCCCCChH-Hc--cCCCCCEEEccCCcCc
Confidence 7753221 1115566788888888887777654 33 3788888888887653
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=4.3e-13 Score=140.44 Aligned_cols=177 Identities=21% Similarity=0.280 Sum_probs=131.0
Q ss_pred CceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCcccccccc-ccCCCccEEecCCCCchhhchh-hhcCcCCCCcee
Q 047584 601 QRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLPESV-NKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLK 677 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~ 677 (883)
+.|+.|+|++|.+..+|. .+.++++|++|++++|.++.+|..+ .++++|++|++++| .+..+|. .+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEE
Confidence 568999999999988865 6899999999999999999998764 78999999999984 5666664 468899999999
Q ss_pred cCCCCCccccCcc-CCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEE
Q 047584 678 NSNTDSLEEMPLG-IVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSL 756 (883)
Q Consensus 678 l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 756 (883)
+++|. +..+|.. ++.+++|++|. .+.+ .+..+ ....+..+++|+.|++
T Consensus 116 l~~n~-l~~~~~~~~~~l~~L~~L~---Ls~n---------------------~l~~~------~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 116 LDRNQ-LKSLPPRVFDSLTKLTYLS---LGYN---------------------ELQSL------PKGVFDKLTSLKELRL 164 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEE---CCSS---------------------CCCCC------CTTTTTTCTTCCEEEC
T ss_pred CCCCc-cCeeCHHHhCcCcCCCEEE---CCCC---------------------cCCcc------CHhHccCCcccceeEe
Confidence 99987 6666543 56666666662 1110 01100 1123567788999999
Q ss_pred EeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCC
Q 047584 757 NWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGI 821 (883)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~ 821 (883)
+.|..... ....+..+++|+.|++++|.+..+|.... ..+++|+.|+|++|+.
T Consensus 165 ~~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 165 YNNQLKRV-----------PEGAFDKLTELKTLKLDNNQLKRVPEGAF-DSLEKLKMLQLQENPW 217 (270)
T ss_dssp CSSCCSCC-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCB
T ss_pred cCCcCcEe-----------ChhHhccCCCcCEEECCCCcCCcCCHHHh-ccccCCCEEEecCCCe
Confidence 77532210 12235667899999999999998887533 2489999999999975
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.47 E-value=5.3e-15 Score=160.63 Aligned_cols=230 Identities=17% Similarity=0.128 Sum_probs=147.5
Q ss_pred CCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCC--cCccccCCCcccEEeccCCCcc-ccccccccCC
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPE--LPDSVGDLRYLRYLNLSGTVIR-SLPESVNKLY 647 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~--lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~ 647 (883)
++++.+.+..+. +. ..++.++++++|++|+|++|.+.. +|..+..+++|++|++++|.++ ..|..+++++
T Consensus 70 ~~l~~L~l~~n~------l~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 70 QGVIAFRCPRSF------MD-QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142 (336)
T ss_dssp TTCSEEECTTCE------EC-SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred ccceEEEcCCcc------cc-ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence 566777654433 11 122335578889999999988764 6777888899999999998887 5677888889
Q ss_pred CccEEecCCCCchh--hchhhhcCcCCCCceecCCCCCccc--cCccCCCCC-CCCccCceEeC-cCC-CCCcccccccc
Q 047584 648 NLHSLLLEDCDRLK--KLCADMGNLIKLHHLKNSNTDSLEE--MPLGIVRLT-CLQTLCNFVVA-KDS-GSGLRELKSLT 720 (883)
Q Consensus 648 ~L~~L~l~~c~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~--~p~~i~~L~-~L~~L~~~~~~-~~~-~~~~~~l~~L~ 720 (883)
+|++|++++|..+. .+|..+..+++|++|++++|..+.. +|..++.++ +|++|...... ... ......+.+++
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 99999999875555 4677788889999999998832553 566677777 88887433221 111 11123445677
Q ss_pred cCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCC
Q 047584 721 HLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFP 800 (883)
Q Consensus 721 ~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p 800 (883)
+|+ .|.+.+...+ .+.....+..+++|+.|++++|... ....+..+..+++|+.|++++| ++
T Consensus 223 ~L~-~L~l~~~~~l---~~~~~~~l~~l~~L~~L~l~~~~~~----------~~~~~~~l~~~~~L~~L~l~~~----i~ 284 (336)
T 2ast_B 223 NLV-HLDLSDSVML---KNDCFQEFFQLNYLQHLSLSRCYDI----------IPETLLELGEIPTLKTLQVFGI----VP 284 (336)
T ss_dssp TCS-EEECTTCTTC---CGGGGGGGGGCTTCCEEECTTCTTC----------CGGGGGGGGGCTTCCEEECTTS----SC
T ss_pred CCC-EEeCCCCCcC---CHHHHHHHhCCCCCCEeeCCCCCCC----------CHHHHHHHhcCCCCCEEeccCc----cC
Confidence 777 7777654322 2233445677788999998775311 1112334556788999999887 33
Q ss_pred cCCCcCCC-CCeeEEEEecCCCCCCCC
Q 047584 801 TWLGDSLF-SNLVTLKFENCGICTALP 826 (883)
Q Consensus 801 ~~~~~~~l-~~L~~L~L~~~~~~~~l~ 826 (883)
..... .+ .+|..|++++|...+..|
T Consensus 285 ~~~~~-~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 285 DGTLQ-LLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp TTCHH-HHHHHSTTSEESCCCSCCTTC
T ss_pred HHHHH-HHHhhCcceEEecccCccccC
Confidence 22110 12 235566677776555554
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.45 E-value=4.9e-13 Score=158.54 Aligned_cols=122 Identities=23% Similarity=0.276 Sum_probs=99.2
Q ss_pred CCceEeeeccccCCCCCCCCCCch-hhhcCCCceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCcccccc-ccccCC
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSIL-PKLLKLQRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLPE-SVNKLY 647 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~-~~l~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~ 647 (883)
+.++.|.+..+. +. .++ ..+.++++|++|+|++|.++.+|+ .+.+|++|++|+|++|+++.+|+ .|.+|+
T Consensus 52 ~~~~~LdLs~N~------i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNP------LR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TTCCEEECTTSC------CC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred cCCCEEEeeCCC------CC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 467777765443 32 233 345689999999999999999865 68999999999999999999986 579999
Q ss_pred CccEEecCCCCchhhchh-hhcCcCCCCceecCCCCCcc--ccCccCCCCCCCCccC
Q 047584 648 NLHSLLLEDCDRLKKLCA-DMGNLIKLHHLKNSNTDSLE--EMPLGIVRLTCLQTLC 701 (883)
Q Consensus 648 ~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~--~~p~~i~~L~~L~~L~ 701 (883)
+|++|++++| .+..+|. .++++++|++|++++|. +. .+|..++.+++|++|.
T Consensus 125 ~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 125 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp TCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEE
T ss_pred CCCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhc
Confidence 9999999995 6777775 48999999999999997 54 3567788899998883
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=1.4e-13 Score=144.20 Aligned_cols=207 Identities=21% Similarity=0.257 Sum_probs=138.5
Q ss_pred cCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccc-cccC
Q 047584 568 YDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPES-VNKL 646 (883)
Q Consensus 568 ~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l 646 (883)
..+++|+.|.+..+.. ..++.+..+++|++|++++|.+..++ .++.+++|++|++++|.++.+|.. +.++
T Consensus 38 ~~l~~L~~L~l~~~~i--------~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 108 (272)
T 3rfs_A 38 NELNSIDQIIANNSDI--------KSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKL 108 (272)
T ss_dssp HHHTTCCEEECTTSCC--------CCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred ccccceeeeeeCCCCc--------ccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCC
Confidence 4566677776554331 22344667889999999999988764 788899999999999999988664 6889
Q ss_pred CCccEEecCCCCchhhchh-hhcCcCCCCceecCCCCCccccCcc-CCCCCCCCccCceEeCcCCCCCcccccccccCCC
Q 047584 647 YNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLKNSNTDSLEEMPLG-IVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLER 724 (883)
Q Consensus 647 ~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 724 (883)
++|++|++++| .+..+|. .+..+++|++|++++|. +..+|.. ++.+++|++|. .+.+ ++
T Consensus 109 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~---l~~n------------~l-- 169 (272)
T 3rfs_A 109 TNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELD---LSYN------------QL-- 169 (272)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE---CCSS------------CC--
T ss_pred cCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEE---CCCC------------Cc--
Confidence 99999999985 4556654 47889999999999987 6666654 46666666662 1111 00
Q ss_pred eeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCC
Q 047584 725 TLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLG 804 (883)
Q Consensus 725 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 804 (883)
.. ..+..+..+++|+.|+++.|.... .....+..+++|+.|++++|.+. .
T Consensus 170 -------~~------~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~~~------~ 219 (272)
T 3rfs_A 170 -------QS------LPEGVFDKLTQLKDLRLYQNQLKS-----------VPDGVFDRLTSLQYIWLHDNPWD------C 219 (272)
T ss_dssp -------CC------CCTTTTTTCTTCCEEECCSSCCSC-----------CCTTTTTTCTTCCEEECCSSCBC------C
T ss_pred -------Cc------cCHHHhcCCccCCEEECCCCcCCc-----------cCHHHHhCCcCCCEEEccCCCcc------c
Confidence 00 011235566778888887652221 01123456678888888887542 2
Q ss_pred cCCCCCeeEEEEecCCCCCCCC-CCCCcCcc
Q 047584 805 DSLFSNLVTLKFENCGICTALP-SVGQLPSL 834 (883)
Q Consensus 805 ~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L 834 (883)
.+++|+.|+++.|...+.+| .++.++..
T Consensus 220 --~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 220 --TCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp --CTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred --cCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 26778888888887766666 56655543
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=7.6e-13 Score=136.89 Aligned_cols=174 Identities=21% Similarity=0.274 Sum_probs=113.1
Q ss_pred CceeEEeeCCCCCCCcCccccCCCcccEEeccCCCcccccc-ccccCCCccEEecCCCCchhhch-hhhcCcCCCCceec
Q 047584 601 QRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLKKLC-ADMGNLIKLHHLKN 678 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp-~~i~~L~~L~~L~l 678 (883)
...++++++++.++.+|..+. .+|++|+|++|.++.++. .+.++++|++|++++| .+..++ ..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 346788888888888887765 588899999988887754 6888889999999885 455554 45788889999999
Q ss_pred CCCCCccccCcc-CCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEE
Q 047584 679 SNTDSLEEMPLG-IVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLN 757 (883)
Q Consensus 679 ~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 757 (883)
++|. +..+|.. ++.+++|++|. .+.+ .+..+ ....+..+++|+.|+++
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~---L~~N---------------------~l~~~------~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLY---LGGN---------------------QLKSL------PSGVFDRLTKLKELRLN 139 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEE---CCSS---------------------CCCCC------CTTTTTTCTTCCEEECC
T ss_pred CCCc-ccccChhHhcccCCCCEEE---cCCC---------------------cCCCc------ChhHhccCCcccEEECc
Confidence 8887 5665533 45555555551 1110 00000 11224556777778776
Q ss_pred eccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCc-CCCcCCCCCeeEEEEecCCC
Q 047584 758 WTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPT-WLGDSLFSNLVTLKFENCGI 821 (883)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~ 821 (883)
.|..... ....+..+++|+.|++++|.+..+|. .+. .+++|+.|+|++|+.
T Consensus 140 ~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 140 TNQLQSI-----------PAGAFDKLTNLQTLSLSTNQLQSVPHGAFD--RLGKLQTITLFGNQF 191 (251)
T ss_dssp SSCCCCC-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSCCB
T ss_pred CCcCCcc-----------CHHHcCcCcCCCEEECCCCcCCccCHHHHh--CCCCCCEEEeeCCce
Confidence 6422210 11234556778888888877777665 332 367788888887764
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.43 E-value=4e-13 Score=137.95 Aligned_cols=181 Identities=19% Similarity=0.167 Sum_probs=128.7
Q ss_pred CCCcCccccCCCcccEEeccCCCcccccc-ccccCCCccEEecCCCCchhhchh-hhcCcCCCCceecCC-CCCccccCc
Q 047584 613 IPELPDSVGDLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLKNSN-TDSLEEMPL 689 (883)
Q Consensus 613 ~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~-~~~~~~~p~ 689 (883)
++.+|. +. .+|++|++++|.++.+|+ .+.++++|++|++++|..+..+|. .+..+++|++|++++ |. +..+|.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDP 98 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCH
Confidence 777887 54 389999999999999876 788999999999999654777765 578899999999987 54 555442
Q ss_pred -cCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCc
Q 047584 690 -GIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSR 768 (883)
Q Consensus 690 -~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 768 (883)
.+.. +++|+.|+++.|....
T Consensus 99 ~~f~~------------------------------------------------------l~~L~~L~l~~n~l~~----- 119 (239)
T 2xwt_C 99 DALKE------------------------------------------------------LPLLKFLGIFNTGLKM----- 119 (239)
T ss_dssp TSEEC------------------------------------------------------CTTCCEEEEEEECCCS-----
T ss_pred HHhCC------------------------------------------------------CCCCCEEeCCCCCCcc-----
Confidence 1222 3344455554432110
Q ss_pred chhhHHhhhcCCCCCCCcc---eEEEEec-CCCCCCcC-CCcCCCCCee-EEEEecCCCCCCCC-CCCCcCcccceeccC
Q 047584 769 EAETEMGVLDVLKPHANLE---QFCIKGY-GGMKFPTW-LGDSLFSNLV-TLKFENCGICTALP-SVGQLPSLKHLVVCG 841 (883)
Q Consensus 769 ~~~~~~~~l~~l~~~~~L~---~L~l~~~-~~~~~p~~-~~~~~l~~L~-~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~ 841 (883)
+..+..+++|+ .|++++| .+..+|.. +. .+++|+ .|+|++|... .+| .....++|+.|+|++
T Consensus 120 --------lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~--~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 120 --------FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ--GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp --------CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTT--TTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred --------ccccccccccccccEEECCCCcchhhcCccccc--chhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 11133334455 9999999 88877764 43 389999 9999999654 555 333348999999999
Q ss_pred cccceecCCCccCCCCCCCC-CCcceeecccc
Q 047584 842 MSSVRRLDPEFYGKDASIPF-PYLETLRFEDM 872 (883)
Q Consensus 842 ~~~l~~i~~~~~~~~~~~~~-p~L~~L~l~~~ 872 (883)
|..++.++...+. .+ ++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~-----~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 189 NKYLTVIDKDAFG-----GVYSGPSLLDVSQT 215 (239)
T ss_dssp CTTCCEECTTTTT-----TCSBCCSEEECTTC
T ss_pred CCCcccCCHHHhh-----ccccCCcEEECCCC
Confidence 8768888765443 37 99999999873
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=2.9e-13 Score=144.85 Aligned_cols=227 Identities=14% Similarity=0.096 Sum_probs=151.4
Q ss_pred CCCceeEEeeCCCCCCC--cCc--cccCCCcccEEeccCCCcc-cccccc--ccCCCccEEecCCCCchhhch----hhh
Q 047584 599 KLQRLRVFSLRGYCIPE--LPD--SVGDLRYLRYLNLSGTVIR-SLPESV--NKLYNLHSLLLEDCDRLKKLC----ADM 667 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~--lp~--~i~~l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~l~~c~~l~~lp----~~i 667 (883)
+...++.|.+.++.+.. +.. ....+.+|++|++++|.+. ..|..+ .++++|++|++++|......| ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 44557888888887643 111 1223567999999999988 456676 899999999999965433322 345
Q ss_pred cCcCCCCceecCCCCCccccC-ccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchH--hhh
Q 047584 668 GNLIKLHHLKNSNTDSLEEMP-LGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAM--EAQ 744 (883)
Q Consensus 668 ~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~--~~~ 744 (883)
..+++|++|++++|. +..+| ..++.+++|++|. .+.+ ... ..... ...
T Consensus 142 ~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~---Ls~N-----------------------~l~--~~~~~~~~~~ 192 (310)
T 4glp_A 142 WLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLD---LSDN-----------------------PGL--GERGLMAALC 192 (310)
T ss_dssp TBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEE---CCSC-----------------------TTC--HHHHHHTTSC
T ss_pred hhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEE---CCCC-----------------------CCc--cchhhhHHHh
Confidence 689999999999998 55554 4566666666662 1111 000 00001 122
Q ss_pred cCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCC-CcCCCcC-CCCCeeEEEEecCCCC
Q 047584 745 MDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKF-PTWLGDS-LFSNLVTLKFENCGIC 822 (883)
Q Consensus 745 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~-~l~~L~~L~L~~~~~~ 822 (883)
+..+++|++|++++|.... ........+..+++|++|++++|.+... |..+..- .+++|++|+|++|...
T Consensus 193 ~~~l~~L~~L~Ls~N~l~~--------l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 193 PHKFPAIQNLALRNTGMET--------PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp TTSSCCCCSCBCCSSCCCC--------HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred hhcCCCCCEEECCCCCCCc--------hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 3577899999998863210 0111111124558999999999998876 6655431 1379999999999765
Q ss_pred CCCC-CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccccc
Q 047584 823 TALP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFEDME 873 (883)
Q Consensus 823 ~~l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~~~ 873 (883)
.+| .+. ++|+.|+|++| .++.+|. + ..+|+|+.|++++.+
T Consensus 265 -~lp~~~~--~~L~~L~Ls~N-~l~~~~~-~------~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 265 -QVPKGLP--AKLRVLDLSSN-RLNRAPQ-P------DELPEVDNLTLDGNP 305 (310)
T ss_dssp -SCCSCCC--SCCSCEECCSC-CCCSCCC-T------TSCCCCSCEECSSTT
T ss_pred -chhhhhc--CCCCEEECCCC-cCCCCch-h------hhCCCccEEECcCCC
Confidence 666 443 89999999988 5666653 2 248999999999865
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=8.8e-13 Score=139.50 Aligned_cols=96 Identities=23% Similarity=0.372 Sum_probs=66.6
Q ss_pred CCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceec
Q 047584 599 KLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKN 678 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l 678 (883)
.+++|++|++++|.+..++ .+..+++|++|++++|.++.+|. +.++++|++|++++| .+..+|. +..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEEC
Confidence 5677777788777777775 36777778888888777777766 777777888888774 4555543 777777888887
Q ss_pred CCCCCccccCccCCCCCCCCcc
Q 047584 679 SNTDSLEEMPLGIVRLTCLQTL 700 (883)
Q Consensus 679 ~~~~~~~~~p~~i~~L~~L~~L 700 (883)
++|. +..++ .++.+++|++|
T Consensus 120 ~~n~-i~~~~-~l~~l~~L~~L 139 (291)
T 1h6t_A 120 EHNG-ISDIN-GLVHLPQLESL 139 (291)
T ss_dssp TTSC-CCCCG-GGGGCTTCCEE
T ss_pred CCCc-CCCCh-hhcCCCCCCEE
Confidence 7776 55442 45555555554
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=3.7e-13 Score=154.54 Aligned_cols=178 Identities=20% Similarity=0.204 Sum_probs=109.0
Q ss_pred CceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCC
Q 047584 601 QRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSN 680 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~ 680 (883)
.+|++|+|++|.++.+|..+. ++|++|+|++|.++.+| ..+++|++|++++| .+..+|. +.. +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 378888888888888887664 78888888888888888 45788888888884 5666777 554 888888888
Q ss_pred CCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEecc
Q 047584 681 TDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTC 760 (883)
Q Consensus 681 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 760 (883)
|. +..+|. .+++|++| .++.+....+.. .+++|+.|++++|.
T Consensus 130 N~-l~~lp~---~l~~L~~L---~Ls~N~l~~lp~-------------------------------~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 130 NQ-LTMLPE---LPALLEYI---NADNNQLTMLPE-------------------------------LPTSLEVLSVRNNQ 171 (571)
T ss_dssp SC-CSCCCC---CCTTCCEE---ECCSSCCSCCCC-------------------------------CCTTCCEEECCSSC
T ss_pred Cc-CCCCCC---cCccccEE---eCCCCccCcCCC-------------------------------cCCCcCEEECCCCC
Confidence 87 666775 45555555 222111000000 23456666665542
Q ss_pred CCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCe-------eEEEEecCCCCCCCC-CCCCcC
Q 047584 761 STDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNL-------VTLKFENCGICTALP-SVGQLP 832 (883)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~-~l~~lp 832 (883)
... +..+. ++|+.|+|++|.+..+|. +. .+| +.|+|++|... .+| .+..++
T Consensus 172 L~~-------------lp~l~--~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~ 230 (571)
T 3cvr_A 172 LTF-------------LPELP--ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRIT-HIPENILSLD 230 (571)
T ss_dssp CSC-------------CCCCC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred CCC-------------cchhh--CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcce-ecCHHHhcCC
Confidence 211 11121 566666666666666665 32 144 67777766433 444 455567
Q ss_pred cccceeccCcccce
Q 047584 833 SLKHLVVCGMSSVR 846 (883)
Q Consensus 833 ~L~~L~L~~~~~l~ 846 (883)
+|+.|+|++|+..+
T Consensus 231 ~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 231 PTCTIILEDNPLSS 244 (571)
T ss_dssp TTEEEECCSSSCCH
T ss_pred CCCEEEeeCCcCCC
Confidence 77777776664333
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=1.9e-13 Score=144.64 Aligned_cols=188 Identities=16% Similarity=0.206 Sum_probs=121.9
Q ss_pred CCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecC
Q 047584 600 LQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNS 679 (883)
Q Consensus 600 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~ 679 (883)
+..+..+.+..+.+..+. .+..+.+|++|++++|.++.+|. +..+++|++|++++| .+..+|. +..+++|++|+++
T Consensus 23 l~~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECC
Confidence 334444556666666542 34678999999999999999964 899999999999995 6777776 9999999999999
Q ss_pred CCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEec
Q 047584 680 NTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWT 759 (883)
Q Consensus 680 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 759 (883)
+|. +..+| .++.+++|++| ..+.+....+.. +..+++|+.|++++|
T Consensus 99 ~n~-l~~~~-~l~~l~~L~~L---~L~~n~i~~~~~-----------------------------l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 99 ENK-VKDLS-SLKDLKKLKSL---SLEHNGISDING-----------------------------LVHLPQLESLYLGNN 144 (291)
T ss_dssp SSC-CCCGG-GGTTCTTCCEE---ECTTSCCCCCGG-----------------------------GGGCTTCCEEECCSS
T ss_pred CCc-CCCCh-hhccCCCCCEE---ECCCCcCCCChh-----------------------------hcCCCCCCEEEccCC
Confidence 998 66655 36777777666 222221111222 334455666666553
Q ss_pred cCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCcccceec
Q 047584 760 CSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKHLVV 839 (883)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L 839 (883)
... .+..+..+++|+.|++++|.+..++. +. .+++|+.|+|++|. ++.++.+..+++|+.|++
T Consensus 145 ~l~-------------~~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l 207 (291)
T 1h6t_A 145 KIT-------------DITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLEL 207 (291)
T ss_dssp CCC-------------CCGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEE
T ss_pred cCC-------------cchhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCc-CCCChhhccCCCCCEEEC
Confidence 211 01233445666666666666665554 32 26666666666663 344555666666666666
Q ss_pred cCc
Q 047584 840 CGM 842 (883)
Q Consensus 840 ~~~ 842 (883)
++|
T Consensus 208 ~~n 210 (291)
T 1h6t_A 208 FSQ 210 (291)
T ss_dssp EEE
T ss_pred cCC
Confidence 655
No 101
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.40 E-value=5.6e-14 Score=165.23 Aligned_cols=259 Identities=16% Similarity=0.163 Sum_probs=156.8
Q ss_pred hhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccc--cccccccCCCccEEecCCCCchhhchhhhcCcCC
Q 047584 595 PKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRS--LPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIK 672 (883)
Q Consensus 595 ~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~ 672 (883)
..+..+++|+.|+++++....+|..+..+++|++|+|++|.++. ++..+.++++|++|+++++..-..++.....+++
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 34446777888888777666777777788888888888887652 2344677888888888753333444554567788
Q ss_pred CCceecCC----------CCCccc--cCccCCCCCCCCccCceEeCcCCCCCcccccc-cccCCCeeEEeccCCCCCcc-
Q 047584 673 LHHLKNSN----------TDSLEE--MPLGIVRLTCLQTLCNFVVAKDSGSGLRELKS-LTHLERTLKISKLENVKCVG- 738 (883)
Q Consensus 673 L~~L~l~~----------~~~~~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~-L~~L~~~L~i~~l~~~~~~~- 738 (883)
|++|++++ |..+.. ++.-...+++|++|.. ..+..++..+..+.. +++|+ .|.+..++..+...
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~-~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLC-DFRLVLLDREERITD 421 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCC-EEEEEECSCCSCCSS
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCc-EEEEeecCCCccccC
Confidence 88888884 432331 2222344677777743 334444444445544 67777 77776443211122
Q ss_pred ----chHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCC-CCCCCcceEEEEecCCCC--CCcCCCcCCCCCe
Q 047584 739 ----DAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVL-KPHANLEQFCIKGYGGMK--FPTWLGDSLFSNL 811 (883)
Q Consensus 739 ----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L 811 (883)
+.+...+.++++|+.|++++|... ... ..+..+ ..+++|+.|++++|.... ++.++.. +++|
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~--------l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~--~~~L 490 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGG--------LTD-LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG--CPNL 490 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGG--------CCH-HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC--CTTC
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCC--------ccH-HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhc--Cccc
Confidence 234455666888999999764211 001 111111 235789999998887653 4444443 7899
Q ss_pred eEEEEecCCCCCC-CC-CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccc
Q 047584 812 VTLKFENCGICTA-LP-SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFED 871 (883)
Q Consensus 812 ~~L~L~~~~~~~~-l~-~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~ 871 (883)
++|+|++|+.... ++ ....+|+|++|+|++|. ++..+..... ..+|.|....+..
T Consensus 491 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~----~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQ----MARPYWNIELIPS 547 (592)
T ss_dssp CEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGG----GCCTTEEEEEECC
T ss_pred CeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHH----HhCCCcEEEEecC
Confidence 9999999974221 33 33468899999999885 5444333222 3467666655443
No 102
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=2.5e-11 Score=134.11 Aligned_cols=294 Identities=13% Similarity=0.033 Sum_probs=178.7
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhc----c--CCeEEEEEeCCCC-CHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQD----H--FDLKAWTCVSEDF-DVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~--F~~~~wv~~s~~~-~~~ 260 (883)
..++||+.+++++.+++..... ....+.+.|+|++|+||||||+.+++...-.. . ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988754211 12346899999999999999999998432111 1 3356788877766 788
Q ss_pred HHHHHHHHHhccCCC--CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhh-cccccCCCCCcEEEEeCCChhH-
Q 047584 261 GLTRTILSSITKQTV--DNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARL-SLPFQAGAQGSKIVVTTRNEEV- 336 (883)
Q Consensus 261 ~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~ilvTTR~~~v- 336 (883)
.++..++.++.+... .......+...+.+.+..++.+|||||++......+... ...+.....+..+|+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 888998888843322 223345667778888887777999999965321111111 1112111157788888886531
Q ss_pred ---HHh--cCCCccEeCCCCCHHhHHHHHHhhhcC-CCCCCCCccHHHHHHHHHHhcC---CChH-HHHHHHhh--hcC-
Q 047584 337 ---AKI--MSLDQAYELKSLSTEDCLSVLAQHSLE-TTDFSSHKSLEEIGKEIVIKCN---GLPL-AAKTLGGL--LHG- 403 (883)
Q Consensus 337 ---a~~--~~~~~~~~l~~L~~~~~~~Lf~~~a~~-~~~~~~~~~l~~~~~~I~~~c~---GlPL-ai~~~~~~--l~~- 403 (883)
... ......+.+++++.++...+|...+.. -...... ++....|++.|+ |.|. |+..+-.. ++.
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 111 011238999999999999999987531 1111112 345667777777 8886 33333222 221
Q ss_pred --CCChHHHHHHHhcccccCCCCCCCchhHHHHhhcCCChhHHHHhhHhccCCCCceeCHHHHHHHHHhCCCCcCCCCCC
Q 047584 404 --KPYKREWKGVLSSKIWELPEDRCPIIPALAVSYYYLPPILKQCFAYCSLFPKDYEFDEEEIILLWCASGFLDHKESGN 481 (883)
Q Consensus 404 --~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~ 481 (883)
.-+.+.+...+... ....+..+++.|+++.+..+..++....+..+. . ...-+++.+ +...
T Consensus 255 ~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~--~~~~~~~~~----g~~~ 317 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-K--MYTDLCNKF----KQKP 317 (384)
T ss_dssp SSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-H--HHHHHHHHT----TCCC
T ss_pred CCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-H--HHHHHHHHc----CCCC
Confidence 12355666555432 123466778899998888877777611101111 0 111222211 0112
Q ss_pred ChHHHHHHHHHHHHhcCccccc
Q 047584 482 PNEDLGRKFFQELRSRSFFQQS 503 (883)
Q Consensus 482 ~~e~~~~~~l~~L~~~sllq~~ 503 (883)
........++..|..+++++..
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 2345677889999999999874
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=3.3e-14 Score=155.84 Aligned_cols=235 Identities=10% Similarity=0.058 Sum_probs=144.5
Q ss_pred hhhc-CCCceeEEeeCCCCCCCcC-----ccccCCC-cccEEeccCCCcccc-ccccccC-----CCccEEecCCCCchh
Q 047584 595 PKLL-KLQRLRVFSLRGYCIPELP-----DSVGDLR-YLRYLNLSGTVIRSL-PESVNKL-----YNLHSLLLEDCDRLK 661 (883)
Q Consensus 595 ~~l~-~l~~Lr~L~L~~~~~~~lp-----~~i~~l~-~L~~L~L~~~~i~~l-p~~i~~l-----~~L~~L~l~~c~~l~ 661 (883)
+.+. ..++|++|+|++|.+...+ ..+..++ +|++|+|++|.++.. +..+..+ ++|++|++++|....
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 3444 5566999999999998775 5677888 899999999999865 5566664 999999999965333
Q ss_pred hchhh----hcCc-CCCCceecCCCCCccccCc-c----CCC-CCCCCccCceEeCcC--CCCCccc----ccccc-cCC
Q 047584 662 KLCAD----MGNL-IKLHHLKNSNTDSLEEMPL-G----IVR-LTCLQTLCNFVVAKD--SGSGLRE----LKSLT-HLE 723 (883)
Q Consensus 662 ~lp~~----i~~L-~~L~~L~l~~~~~~~~~p~-~----i~~-L~~L~~L~~~~~~~~--~~~~~~~----l~~L~-~L~ 723 (883)
..+.. +..+ ++|++|++++|. +...+. . +.. .++|++| +.+.+ ....... +..++ +|+
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L---~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSL---NLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEE---ECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEE---EccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 33443 4455 899999999998 555443 2 333 2467666 33222 1222222 23333 666
Q ss_pred CeeEEeccCCCCCccchHhhhcCCC-CCCCceEEEeccCCCCCCCcchhhHHhhhcCCCC-CCCcceEEEEecCCCCCCc
Q 047584 724 RTLKISKLENVKCVGDAMEAQMDGK-KNLKELSLNWTCSTDGSSSREAETEMGVLDVLKP-HANLEQFCIKGYGGMKFPT 801 (883)
Q Consensus 724 ~~L~i~~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~L~~L~l~~~~~~~~p~ 801 (883)
.|.+.+..-.......+...+..+ ++|+.|++++|...+ .........+.. +++|++|++++|.+...+.
T Consensus 171 -~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~-------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 171 -SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL-------KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp -EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG-------SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred -EeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh-------hHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 666654322111122233345555 488888887752210 001112222222 3588888888887766432
Q ss_pred -----CCCcCCCCCeeEEEEecCCCCC-------CC-CCCCCcCcccceeccCcc
Q 047584 802 -----WLGDSLFSNLVTLKFENCGICT-------AL-PSVGQLPSLKHLVVCGMS 843 (883)
Q Consensus 802 -----~~~~~~l~~L~~L~L~~~~~~~-------~l-~~l~~lp~L~~L~L~~~~ 843 (883)
.+. .+++|+.|+|++|.... .+ ..+..+++|+.|++++|+
T Consensus 243 ~~l~~~~~--~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 243 ENLKLLKD--SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHTTT--TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHh--cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 222 37888888888886211 11 156678888888888874
No 104
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=3.3e-11 Score=133.31 Aligned_cols=296 Identities=14% Similarity=0.037 Sum_probs=179.2
Q ss_pred ccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhc---c-CCeEEEEEeCCCCCHHHH
Q 047584 187 EAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQD---H-FDLKAWTCVSEDFDVKGL 262 (883)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~~s~~~~~~~~ 262 (883)
+..++||+.+++++.+++...- .....+.+.|+|++|+||||||+.+++...... . -...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 3679999999999999885421 112346899999999999999999997432110 1 124678888888888899
Q ss_pred HHHHHHHhccCCC-CCCChHHHHHHHHHHhC--CCcEEEEEeCCCCCChh--hHhhhc---ccccCC--CCCcEEEEeCC
Q 047584 263 TRTILSSITKQTV-DNNDLNFLQEELKKQLS--RKKFLLVLDDVWNENYT--DWARLS---LPFQAG--AQGSKIVVTTR 332 (883)
Q Consensus 263 ~~~il~~l~~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~--~~~~l~---~~l~~~--~~gs~ilvTTR 332 (883)
+..++.+++.... ...+...+...+.+.+. +++.+|||||++..... ..+.+. ...... ..+..+|+||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 9999999865432 22345666667777763 56899999999654221 112222 211111 34567777776
Q ss_pred ChhHH-----HhcCC--CccEeCCCCCHHhHHHHHHhhhc---CCCCCCCCccHHHHHHHHHHhcC---CChH-HHHHHH
Q 047584 333 NEEVA-----KIMSL--DQAYELKSLSTEDCLSVLAQHSL---ETTDFSSHKSLEEIGKEIVIKCN---GLPL-AAKTLG 398 (883)
Q Consensus 333 ~~~va-----~~~~~--~~~~~l~~L~~~~~~~Lf~~~a~---~~~~~~~~~~l~~~~~~I~~~c~---GlPL-ai~~~~ 398 (883)
..... ..... ...+.+++++.++...++...+. .... .. +++...|++.++ |.|- ++..+.
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~--~~---~~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGV--LD---PDVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTT--BC---SSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCC--CC---HHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 64221 11111 14789999999999999987743 2111 12 234666777777 9994 333322
Q ss_pred hhh--c---CCC--ChHHHHHHHhcccccCCCCCCCchhHHHHhhcCCChhHHHHhhHhc-cCCCCceeCHHHHHHHHH-
Q 047584 399 GLL--H---GKP--YKREWKGVLSSKIWELPEDRCPIIPALAVSYYYLPPILKQCFAYCS-LFPKDYEFDEEEIILLWC- 469 (883)
Q Consensus 399 ~~l--~---~~~--~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s-~fp~~~~i~~~~li~~Wi- 469 (883)
... . +.. +.+.+...+... ....+.-++..||++.+..+..++ ++.....+....+.+...
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 221 1 111 345555554432 122456678899998887777666 443223455554433321
Q ss_pred -hCCCCcCCCCCCChHHHHHHHHHHHHhcCccccc
Q 047584 470 -ASGFLDHKESGNPNEDLGRKFFQELRSRSFFQQS 503 (883)
Q Consensus 470 -aeg~i~~~~~~~~~e~~~~~~l~~L~~~sllq~~ 503 (883)
++.. +........+..++++|...|+++..
T Consensus 321 ~~~~~----~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTL----GLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHT----TCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhc----CCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 1110 01122346778899999999999874
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=3.1e-13 Score=147.33 Aligned_cols=221 Identities=15% Similarity=0.090 Sum_probs=148.1
Q ss_pred CceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCcc-cccc-ccccCCCccEEecCCCCchhhch-hhhcCcCCCCce
Q 047584 601 QRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIR-SLPE-SVNKLYNLHSLLLEDCDRLKKLC-ADMGNLIKLHHL 676 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~-~lp~-~i~~l~~L~~L~l~~c~~l~~lp-~~i~~L~~L~~L 676 (883)
++++.|+|++|.|+.+|. .+.++++|++|+|++|.+. .+|. .+.++++|+.+...+++.+..+| ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 578999999999999986 5799999999999999985 4654 57889888876555556777775 558899999999
Q ss_pred ecCCCCCccccCcc-CCCCCCCCccCceEeCcCCCCCcccccccc-cCCCeeEEeccCCCCCccchHhhhcCCCCCCCce
Q 047584 677 KNSNTDSLEEMPLG-IVRLTCLQTLCNFVVAKDSGSGLRELKSLT-HLERTLKISKLENVKCVGDAMEAQMDGKKNLKEL 754 (883)
Q Consensus 677 ~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~-~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 754 (883)
++++|. +..+|.. +....++..|...............+..+. .++ .|.+.+ .. .. .++.......+|+.|
T Consensus 110 ~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~-~L~L~~---N~-i~-~i~~~~f~~~~L~~l 182 (350)
T 4ay9_X 110 LISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV-ILWLNK---NG-IQ-EIHNSAFNGTQLDEL 182 (350)
T ss_dssp EEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE-EEECCS---SC-CC-EECTTSSTTEEEEEE
T ss_pred cccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhh-hhcccc---cc-cc-CCChhhccccchhHH
Confidence 999987 6666643 333344444422111111111111222222 222 333332 11 11 122233345678888
Q ss_pred EEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCcc
Q 047584 755 SLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSL 834 (883)
Q Consensus 755 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L 834 (883)
.+..+.... ....+.+..+++|+.|++++|.+..+|.+. +.+|++|.+.+|..++.+|.+..+++|
T Consensus 183 ~l~~~n~l~----------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~----~~~L~~L~~l~~~~l~~lP~l~~l~~L 248 (350)
T 4ay9_X 183 NLSDNNNLE----------ELPNDVFHGASGPVILDISRTRIHSLPSYG----LENLKKLRARSTYNLKKLPTLEKLVAL 248 (350)
T ss_dssp ECTTCTTCC----------CCCTTTTTTEECCSEEECTTSCCCCCCSSS----CTTCCEEECTTCTTCCCCCCTTTCCSC
T ss_pred hhccCCccc----------CCCHHHhccCcccchhhcCCCCcCccChhh----hccchHhhhccCCCcCcCCCchhCcCh
Confidence 886421110 001134567789999999999999999754 789999999999999999999999999
Q ss_pred cceeccCc
Q 047584 835 KHLVVCGM 842 (883)
Q Consensus 835 ~~L~L~~~ 842 (883)
+.+++.++
T Consensus 249 ~~l~l~~~ 256 (350)
T 4ay9_X 249 MEASLTYP 256 (350)
T ss_dssp CEEECSCH
T ss_pred hhCcCCCC
Confidence 99999743
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=2.4e-13 Score=157.94 Aligned_cols=196 Identities=15% Similarity=0.196 Sum_probs=147.5
Q ss_pred CCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceec
Q 047584 599 KLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKN 678 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l 678 (883)
.+..+..+.+..+.+..++ .+..|.+|++|++++|.+..+| .+..|++|+.|+|++| .+..+|. +..+++|++|+|
T Consensus 19 ~l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEEC
T ss_pred HHHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEEC
Confidence 3445566677777776654 3568899999999999999987 5899999999999995 5677776 899999999999
Q ss_pred CCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEe
Q 047584 679 SNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNW 758 (883)
Q Consensus 679 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 758 (883)
++|. +..+| .++.+++|+.|. ++.+ .+. . . ..+..+++|+.|+|+.
T Consensus 95 s~N~-l~~l~-~l~~l~~L~~L~---Ls~N------------~l~---------~---l-----~~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 95 DENK-IKDLS-SLKDLKKLKSLS---LEHN------------GIS---------D---I-----NGLVHLPQLESLYLGN 140 (605)
T ss_dssp CSSC-CCCCT-TSTTCTTCCEEE---CTTS------------CCC---------C---C-----GGGGGCTTCSEEECCS
T ss_pred cCCC-CCCCh-hhccCCCCCEEE---ecCC------------CCC---------C---C-----ccccCCCccCEEECCC
Confidence 9997 66655 566666666662 1111 011 0 0 1255678999999988
Q ss_pred ccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCccccee
Q 047584 759 TCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSLKHLV 838 (883)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~ 838 (883)
|... .+..+..+++|+.|+|++|.+..++. +. .+++|+.|+|++|. +..+|.+..+++|+.|+
T Consensus 141 N~l~-------------~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 141 NKIT-------------DITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLE 203 (605)
T ss_dssp SCCC-------------CCGGGGSCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEE
T ss_pred CccC-------------CchhhcccCCCCEEECcCCcCCCchh-hc--cCCCCCEEECcCCC-CCCChHHccCCCCCEEE
Confidence 6332 12456677899999999999988866 54 48999999999995 45578899999999999
Q ss_pred ccCcccceecCC
Q 047584 839 VCGMSSVRRLDP 850 (883)
Q Consensus 839 L~~~~~l~~i~~ 850 (883)
|++| .+...|.
T Consensus 204 L~~N-~l~~~p~ 214 (605)
T 1m9s_A 204 LFSQ-ECLNKPI 214 (605)
T ss_dssp CCSE-EEECCCC
T ss_pred ccCC-cCcCCcc
Confidence 9988 4444443
No 107
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.37 E-value=1.8e-11 Score=135.56 Aligned_cols=298 Identities=12% Similarity=0.033 Sum_probs=185.4
Q ss_pred ccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC-CeEEEEEeCCCCCHHHHHHH
Q 047584 187 EAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF-DLKAWTCVSEDFDVKGLTRT 265 (883)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~ 265 (883)
+..++||+.+++++.+++........+..+.+.|+|++|+||||||+.+++. ..... ...+|++++...+...+...
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 3679999999999999886521001112348999999999999999999974 32221 24678888887788899999
Q ss_pred HHHHhccCCC-CCCChHHHHHHHHHHhC--CCcEEEEEeCCCCCChhhHhhhcccccCCC----CCcEEEEeCCChhHHH
Q 047584 266 ILSSITKQTV-DNNDLNFLQEELKKQLS--RKKFLLVLDDVWNENYTDWARLSLPFQAGA----QGSKIVVTTRNEEVAK 338 (883)
Q Consensus 266 il~~l~~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~ilvTTR~~~va~ 338 (883)
++..++.... .......+...+.+.+. +++.+||||+++..+......+...+.... .+..||++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 9988864322 12345566666666553 668999999998776555555544443211 3667888877654433
Q ss_pred hcC-------CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhc---------CCChHHHHHHHhh-h
Q 047584 339 IMS-------LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKC---------NGLPLAAKTLGGL-L 401 (883)
Q Consensus 339 ~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c---------~GlPLai~~~~~~-l 401 (883)
... ....+.+.+++.++...++...+..... ...--++....|++.+ +|.|-.+..+... .
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 221 1236999999999999999877532100 0011246678888888 7887544433222 1
Q ss_pred --c---CCC--ChHHHHHHHhcccccCCCCCCCchhHHHHhhcCCChhHHHHhhHhccCC---CCceeCHHHHHHHHHh-
Q 047584 402 --H---GKP--YKREWKGVLSSKIWELPEDRCPIIPALAVSYYYLPPILKQCFAYCSLFP---KDYEFDEEEIILLWCA- 470 (883)
Q Consensus 402 --~---~~~--~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp---~~~~i~~~~li~~Wia- 470 (883)
. ... +.+.......... ...+.-.+..||.+.+.++..++.+. .+-.+....+...+-.
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 1 111 1222222222211 11123446778888888888777654 2225666666555432
Q ss_pred ---CCCCcCCCCCCChHHHHHHHHHHHHhcCcccccC
Q 047584 471 ---SGFLDHKESGNPNEDLGRKFFQELRSRSFFQQSA 504 (883)
Q Consensus 471 ---eg~i~~~~~~~~~e~~~~~~l~~L~~~sllq~~~ 504 (883)
.|. ..........++++|...++|....
T Consensus 322 ~~~~~~------~~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 322 CEEYGE------RPRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHTTC------CCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHcCC------CCCCHHHHHHHHHHHHhCCCeEEee
Confidence 221 1123455778999999999998743
No 108
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.37 E-value=2.3e-14 Score=168.49 Aligned_cols=250 Identities=16% Similarity=0.074 Sum_probs=127.8
Q ss_pred CCCceeEEeeCCCCCCC-----cCccccCCCcccEEeccCCCccccccccccCCCccEEecCCC----------------
Q 047584 599 KLQRLRVFSLRGYCIPE-----LPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDC---------------- 657 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c---------------- 657 (883)
++++|++|++++|.+.. ++..+.++++|++|++++|.+..+|..+.++++|+.|+++.+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 45555555555555431 222334455555555555555555544444455555544421
Q ss_pred ----------CchhhchhhhcCcCCCCceecCCCCCccc--cCccCCCCCCCCccCceEeCcCCCCCcccc-cccccCCC
Q 047584 658 ----------DRLKKLCADMGNLIKLHHLKNSNTDSLEE--MPLGIVRLTCLQTLCNFVVAKDSGSGLREL-KSLTHLER 724 (883)
Q Consensus 658 ----------~~l~~lp~~i~~L~~L~~L~l~~~~~~~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l-~~L~~L~~ 724 (883)
.....+|..+..+++|++|++++|. +.. ++..+..+++|++|... +......+..+ .++++|+
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~~~L~- 345 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLK- 345 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHCTTCC-
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHhCCCCC-
Confidence 2234455556666777777777765 321 11224566666666332 11111112222 3455666
Q ss_pred eeEEec----------cCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCC-CCCCcceEEEEe
Q 047584 725 TLKISK----------LENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLK-PHANLEQFCIKG 793 (883)
Q Consensus 725 ~L~i~~----------l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~ 793 (883)
.|.+.+ +..+ ...........+++|++|+++.+ .. ....+..+. .+++|+.|++++
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~--~~~~~~~l~~~~~~L~~L~l~~~-~l----------~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLV--SQRGLIALAQGCQELEYMAVYVS-DI----------TNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCC--CHHHHHHHHHHCTTCSEEEEEES-CC----------CHHHHHHHHHHCCSCCEEEEEE
T ss_pred EEEeecCccccccccccCcc--CHHHHHHHHhhCccCeEEEeecC-Cc----------cHHHHHHHHhhCCCCcEEEEee
Confidence 666663 2222 12223333445677788777442 11 011122222 256888888874
Q ss_pred ----cCCCCCCc------CCCcCCCCCeeEEEEecCCC-CCC--CCCC-CCcCcccceeccCcccceecC-CCccCCCCC
Q 047584 794 ----YGGMKFPT------WLGDSLFSNLVTLKFENCGI-CTA--LPSV-GQLPSLKHLVVCGMSSVRRLD-PEFYGKDAS 858 (883)
Q Consensus 794 ----~~~~~~p~------~~~~~~l~~L~~L~L~~~~~-~~~--l~~l-~~lp~L~~L~L~~~~~l~~i~-~~~~~~~~~ 858 (883)
+.....|. .+. .+++|++|+|++|.. +.. +..+ ..+|+|+.|+|++|. ++..+ ..+.
T Consensus 413 ~~~~n~l~~~p~~~~~~~~~~--~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~----- 484 (592)
T 3ogk_B 413 LDREERITDLPLDNGVRSLLI--GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFS----- 484 (592)
T ss_dssp CSCCSCCSSCCCHHHHHHHHH--HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHH-----
T ss_pred cCCCccccCchHHHHHHHHHH--hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHH-----
Confidence 33333321 122 278888999887653 221 2222 237889999998773 33211 1111
Q ss_pred CCCCCcceeeccccc
Q 047584 859 IPFPYLETLRFEDME 873 (883)
Q Consensus 859 ~~~p~L~~L~l~~~~ 873 (883)
..+++|+.|+|++|+
T Consensus 485 ~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCC 499 (592)
T ss_dssp TCCTTCCEEEEESCC
T ss_pred hcCcccCeeeccCCC
Confidence 248999999999987
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=2.8e-13 Score=140.95 Aligned_cols=168 Identities=20% Similarity=0.186 Sum_probs=103.8
Q ss_pred CCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceec
Q 047584 599 KLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKN 678 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l 678 (883)
++..+..++++++.++.++ .+..+.+|++|++++|.++.+| .+..+++|++|++++| .+..+|. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 4555666777777777776 5677777888888887777776 6777778888888774 5666665 777788888888
Q ss_pred CCCCCccccCccCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEe
Q 047584 679 SNTDSLEEMPLGIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNW 758 (883)
Q Consensus 679 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 758 (883)
++|. +..+|... . ++|++| .+.+..- . . . ..+..+++|+.|++++
T Consensus 93 ~~N~-l~~l~~~~-~-~~L~~L--------------------------~L~~N~l-~---~-~-~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 93 NRNR-LKNLNGIP-S-ACLSRL--------------------------FLDNNEL-R---D-T-DSLIHLKNLEILSIRN 137 (263)
T ss_dssp CSSC-CSCCTTCC-C-SSCCEE--------------------------ECCSSCC-S---B-S-GGGTTCTTCCEEECTT
T ss_pred CCCc-cCCcCccc-c-CcccEE--------------------------EccCCcc-C---C-C-hhhcCcccccEEECCC
Confidence 7776 55554321 1 333333 1111100 0 0 0 1245567777777766
Q ss_pred ccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCC
Q 047584 759 TCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGI 821 (883)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~ 821 (883)
|... .+..+..+++|+.|++++|.+..+ ..+. .+++|+.|+|++|+.
T Consensus 138 N~i~-------------~~~~l~~l~~L~~L~L~~N~i~~~-~~l~--~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 138 NKLK-------------SIVMLGFLSKLEVLDLHGNEITNT-GGLT--RLKKVNWIDLTGQKC 184 (263)
T ss_dssp SCCC-------------BCGGGGGCTTCCEEECTTSCCCBC-TTST--TCCCCCEEEEEEEEE
T ss_pred CcCC-------------CChHHccCCCCCEEECCCCcCcch-HHhc--cCCCCCEEeCCCCcc
Confidence 4221 112344567788888888777666 3343 377788888887754
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=5.3e-12 Score=144.94 Aligned_cols=175 Identities=18% Similarity=0.166 Sum_probs=130.9
Q ss_pred cccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccCceE
Q 047584 625 YLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFV 704 (883)
Q Consensus 625 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 704 (883)
+|++|+|++|.++.+|..+. ++|++|++++| .+..+| ..+++|++|++++|. +..+|. +++ +|++| .
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L---~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHL---D 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEE---E
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEE---E
Confidence 89999999999999998774 89999999994 677888 568999999999997 777886 554 55555 2
Q ss_pred eCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCC
Q 047584 705 VAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHA 784 (883)
Q Consensus 705 ~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 784 (883)
++.+ +| .. ++. .+++|+.|++++|.... +.. .++
T Consensus 127 Ls~N------------~l---------~~-------lp~---~l~~L~~L~Ls~N~l~~-------------lp~--~l~ 160 (571)
T 3cvr_A 127 VDNN------------QL---------TM-------LPE---LPALLEYINADNNQLTM-------------LPE--LPT 160 (571)
T ss_dssp CCSS------------CC---------SC-------CCC---CCTTCCEEECCSSCCSC-------------CCC--CCT
T ss_pred CCCC------------cC---------CC-------CCC---cCccccEEeCCCCccCc-------------CCC--cCC
Confidence 2211 01 11 111 35789999998753221 111 357
Q ss_pred CcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCCCCCCcCcc-------cceeccCcccceecCCCccCCCC
Q 047584 785 NLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALPSVGQLPSL-------KHLVVCGMSSVRRLDPEFYGKDA 857 (883)
Q Consensus 785 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L-------~~L~L~~~~~l~~i~~~~~~~~~ 857 (883)
+|+.|++++|.+..+|. +. ++|+.|+|++|.. +.+|.+.. +| +.|+|++| .++.+|..+..
T Consensus 161 ~L~~L~Ls~N~L~~lp~-l~----~~L~~L~Ls~N~L-~~lp~~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~--- 228 (571)
T 3cvr_A 161 SLEVLSVRNNQLTFLPE-LP----ESLEALDVSTNLL-ESLPAVPV--RNHHSEETEIFFRCREN-RITHIPENILS--- 228 (571)
T ss_dssp TCCEEECCSSCCSCCCC-CC----TTCCEEECCSSCC-SSCCCCC----------CCEEEECCSS-CCCCCCGGGGG---
T ss_pred CcCEEECCCCCCCCcch-hh----CCCCEEECcCCCC-CchhhHHH--hhhcccccceEEecCCC-cceecCHHHhc---
Confidence 99999999999999998 52 8999999999964 46766543 77 99999987 78888876655
Q ss_pred CCCCCCcceeeccccc
Q 047584 858 SIPFPYLETLRFEDME 873 (883)
Q Consensus 858 ~~~~p~L~~L~l~~~~ 873 (883)
+++|+.|+|++++
T Consensus 229 ---l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 229 ---LDPTCTIILEDNP 241 (571)
T ss_dssp ---SCTTEEEECCSSS
T ss_pred ---CCCCCEEEeeCCc
Confidence 9999999999875
No 111
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.32 E-value=4.6e-14 Score=166.05 Aligned_cols=129 Identities=18% Similarity=0.179 Sum_probs=74.7
Q ss_pred CeeEEEeEecCCcccccccccc-CCCCceEeeeccccCCCCCCCCCCchhhhc-CCCceeEEeeCCCCCCC-----cCcc
Q 047584 547 NLRHLSYIRGDYDGVQRFGDLY-DIQHLRTFLPVMLTNSGPCYLAPSILPKLL-KLQRLRVFSLRGYCIPE-----LPDS 619 (883)
Q Consensus 547 ~~r~l~~~~~~~~~~~~~~~~~-~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~-~l~~Lr~L~L~~~~~~~-----lp~~ 619 (883)
.+++|.+..+.... ..+..+. .+++|++|.+..+.. +....++.+. ++++|++|+|++|.++. ++..
T Consensus 106 ~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 106 WLEEIRLKRMVVTD-DCLELIAKSFKNFKVLVLSSCEG-----FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp TCCEEEEESCBCCH-HHHHHHHHHCTTCCEEEEESCEE-----EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCeEEeeCcEEcH-HHHHHHHHhCCCCcEEeCCCcCC-----CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 45566665443221 1122222 466777777654421 2222244444 67788888888777443 2333
Q ss_pred ccCCCcccEEeccCCC--cc--ccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCC
Q 047584 620 VGDLRYLRYLNLSGTV--IR--SLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNT 681 (883)
Q Consensus 620 i~~l~~L~~L~L~~~~--i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~ 681 (883)
...+++|++|++++|. +. .++..+.++++|++|++++|..+..+|..+..+++|++|+++.+
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 3466778888887775 21 22333445677888888877666667777777777777775544
No 112
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.31 E-value=1.7e-11 Score=126.68 Aligned_cols=173 Identities=20% Similarity=0.230 Sum_probs=121.6
Q ss_pred CcccEEeccCCCccccccccccCCCccEEecCCCCchhhc-hhhhcCcCCCCceecCCCCCccccCcc-CCCCCCCCccC
Q 047584 624 RYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKL-CADMGNLIKLHHLKNSNTDSLEEMPLG-IVRLTCLQTLC 701 (883)
Q Consensus 624 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~ 701 (883)
...++++++++.++.+|..+. .+|++|++++|. +..+ |..+..+++|++|++++|. +..++.. +..+++|++|.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEE
Confidence 457899999999999998776 689999999954 5555 4568999999999999998 6655543 66666666662
Q ss_pred ceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCC
Q 047584 702 NFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLK 781 (883)
Q Consensus 702 ~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 781 (883)
++.+ .+ . ...+..+..+++|+.|++++|..... ....+.
T Consensus 90 ---L~~n------------~l---------~------~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~ 128 (251)
T 3m19_A 90 ---LANN------------QL---------A------SLPLGVFDHLTQLDKLYLGGNQLKSL-----------PSGVFD 128 (251)
T ss_dssp ---CTTS------------CC---------C------CCCTTTTTTCTTCCEEECCSSCCCCC-----------CTTTTT
T ss_pred ---CCCC------------cc---------c------ccChhHhcccCCCCEEEcCCCcCCCc-----------ChhHhc
Confidence 1111 01 0 00122356778899999987532210 112345
Q ss_pred CCCCcceEEEEecCCCCCCc-CCCcCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeccCcc
Q 047584 782 PHANLEQFCIKGYGGMKFPT-WLGDSLFSNLVTLKFENCGICTALP-SVGQLPSLKHLVVCGMS 843 (883)
Q Consensus 782 ~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~ 843 (883)
.+++|+.|++++|.+..+|. .+. .+++|+.|+|++|......+ .+..+++|+.|+|++|+
T Consensus 129 ~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 129 RLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 67889999999988888776 343 37889999999886554443 67788899999998873
No 113
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=5.5e-11 Score=131.45 Aligned_cols=298 Identities=12% Similarity=0.049 Sum_probs=174.2
Q ss_pred cccceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC---CeEEEEEeCCCCCHHHH
Q 047584 186 VEAKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF---DLKAWTCVSEDFDVKGL 262 (883)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~~ 262 (883)
.+..|+||+.+++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+++....+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 346799999999999998864210 123468999999999999999999984 33332 25678887766677788
Q ss_pred HHHHHHHhccCCC-CCCChHHHHHHHHHHhC--CCcEEEEEeCCCCCC----hhhHhhhcccccC-CCCCcEEEEeCCCh
Q 047584 263 TRTILSSITKQTV-DNNDLNFLQEELKKQLS--RKKFLLVLDDVWNEN----YTDWARLSLPFQA-GAQGSKIVVTTRNE 334 (883)
Q Consensus 263 ~~~il~~l~~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ilvTTR~~ 334 (883)
+..++.+++.... ...+...+...+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 8888777754321 12345555566666654 458999999996521 1223333222211 22355677777765
Q ss_pred hHHHhcC-------CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcC---CChHHHHHH-Hhhh--
Q 047584 335 EVAKIMS-------LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCN---GLPLAAKTL-GGLL-- 401 (883)
Q Consensus 335 ~va~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~---GlPLai~~~-~~~l-- 401 (883)
....... ....+.+++++.++..+++...+..... ...-..++...|++.++ |.|..+..+ ....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4322111 1247999999999999999876421100 01112455667777777 999844332 2221
Q ss_pred c---CC--CChHHHHHHHhcccccCCCCCCCchhHHHHhhcCCChhHHHHhhHhccCCC-C-ceeCHHHHHHHH--HhCC
Q 047584 402 H---GK--PYKREWKGVLSSKIWELPEDRCPIIPALAVSYYYLPPILKQCFAYCSLFPK-D-YEFDEEEIILLW--CASG 472 (883)
Q Consensus 402 ~---~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~-~-~~i~~~~li~~W--iaeg 472 (883)
. .. -+.+.+...+... ....+.-++..||++.+..+..++.+.+ + ..+....+.... +++.
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 11 1234444444322 1234666778899888877776663221 1 223343332221 1111
Q ss_pred CCcCCCCCCChHHHHHHHHHHHHhcCccccc
Q 047584 473 FLDHKESGNPNEDLGRKFFQELRSRSFFQQS 503 (883)
Q Consensus 473 ~i~~~~~~~~~e~~~~~~l~~L~~~sllq~~ 503 (883)
. +...........+++.|...++++..
T Consensus 322 ~----g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 L----GVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp H----TCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred c----CCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 0 00112335567889999999999763
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=3.5e-13 Score=147.65 Aligned_cols=237 Identities=11% Similarity=0.070 Sum_probs=147.5
Q ss_pred CCCCceEeeeccccCCCCCCCCCCch----hhhcCCC-ceeEEeeCCCCCCCc-CccccCC-----CcccEEeccCCCcc
Q 047584 569 DIQHLRTFLPVMLTNSGPCYLAPSIL----PKLLKLQ-RLRVFSLRGYCIPEL-PDSVGDL-----RYLRYLNLSGTVIR 637 (883)
Q Consensus 569 ~~~~lrsl~~~~~~~~~~~~~~~~~~----~~l~~l~-~Lr~L~L~~~~~~~l-p~~i~~l-----~~L~~L~L~~~~i~ 637 (883)
..++|+.|.+..+. +....+ ..+.+++ +|++|+|++|.+... +..+..+ ++|++|+|++|.++
T Consensus 20 ~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 20 IPHGVTSLDLSLNN------LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp SCTTCCEEECTTSC------GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred CCCCceEEEccCCC------CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 34458888775543 333333 4445787 899999999998765 4455554 89999999999998
Q ss_pred cccc-c----cccC-CCccEEecCCCCchhhch-hh----hcC-cCCCCceecCCCCCcc-----ccCccCCCCC-CCCc
Q 047584 638 SLPE-S----VNKL-YNLHSLLLEDCDRLKKLC-AD----MGN-LIKLHHLKNSNTDSLE-----EMPLGIVRLT-CLQT 699 (883)
Q Consensus 638 ~lp~-~----i~~l-~~L~~L~l~~c~~l~~lp-~~----i~~-L~~L~~L~l~~~~~~~-----~~p~~i~~L~-~L~~ 699 (883)
..+. . +..+ ++|++|++++|. +...+ .. +.. .++|++|++++|. +. .++..+..++ +|++
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccE
Confidence 6543 3 4455 899999999965 54443 23 344 3699999999997 44 3344445554 7777
Q ss_pred cCceEeCcCCCCCcc----ccccc-ccCCCeeEEeccCCCCCccchHhhhcCC-CCCCCceEEEeccCCCCCCCcchhhH
Q 047584 700 LCNFVVAKDSGSGLR----ELKSL-THLERTLKISKLENVKCVGDAMEAQMDG-KKNLKELSLNWTCSTDGSSSREAETE 773 (883)
Q Consensus 700 L~~~~~~~~~~~~~~----~l~~L-~~L~~~L~i~~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~ 773 (883)
|..-. +........ .+..+ ++|+ .|.+.+..-.......++..+.. .++|+.|++++|...+ ...
T Consensus 172 L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~-~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-------~~~ 242 (362)
T 3goz_A 172 LNLRG-NNLASKNCAELAKFLASIPASVT-SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG-------PSL 242 (362)
T ss_dssp EECTT-SCGGGSCHHHHHHHHHTSCTTCC-EEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC-------CCH
T ss_pred eeecC-CCCchhhHHHHHHHHHhCCCCCC-EEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc-------HHH
Confidence 73211 111222222 23334 4777 77776532111111224444544 4589999998863321 111
Q ss_pred HhhhcCCCCCCCcceEEEEecCCCCC--------CcCCCcCCCCCeeEEEEecCCCCCC
Q 047584 774 MGVLDVLKPHANLEQFCIKGYGGMKF--------PTWLGDSLFSNLVTLKFENCGICTA 824 (883)
Q Consensus 774 ~~~l~~l~~~~~L~~L~l~~~~~~~~--------p~~~~~~~l~~L~~L~L~~~~~~~~ 824 (883)
......+..+++|+.|++++|.+..+ +..+. .+++|+.|+|++|.....
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~--~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP--NIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST--TCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc--cCCceEEEecCCCcCCCc
Confidence 12234556778999999999974433 22333 378999999999975433
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=6.4e-12 Score=124.61 Aligned_cols=100 Identities=15% Similarity=0.211 Sum_probs=46.8
Q ss_pred CCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceec
Q 047584 599 KLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKN 678 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l 678 (883)
.+++|++|++++|.+..+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......|..+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 3444555555555555544 4455555555555555444332 4445555555555553322233444555555555555
Q ss_pred CCCCCccccCccCCCCCCCCcc
Q 047584 679 SNTDSLEEMPLGIVRLTCLQTL 700 (883)
Q Consensus 679 ~~~~~~~~~p~~i~~L~~L~~L 700 (883)
++|......|..++.+++|++|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEE
T ss_pred cCCccCcHhHHHHhhCCCCCEE
Confidence 5554211233334444444433
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=2e-11 Score=121.01 Aligned_cols=103 Identities=14% Similarity=0.205 Sum_probs=68.2
Q ss_pred hhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccc-cccccccCCCccEEecCCCCchhhchhhhcCcCCCC
Q 047584 596 KLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRS-LPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLH 674 (883)
Q Consensus 596 ~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~ 674 (883)
.+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .|..++++++|++|++++|......|..+..+++|+
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 3456677777777777665553 56677777777777777764 566777777777777777544444566677777777
Q ss_pred ceecCCCCCccccCccCCCCCCCCcc
Q 047584 675 HLKNSNTDSLEEMPLGIVRLTCLQTL 700 (883)
Q Consensus 675 ~L~l~~~~~~~~~p~~i~~L~~L~~L 700 (883)
+|++++|..+..+| .++.+++|++|
T Consensus 140 ~L~L~~n~~i~~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 140 SIDLSYNGAITDIM-PLKTLPELKSL 164 (197)
T ss_dssp EEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred EEEccCCCCccccH-hhcCCCCCCEE
Confidence 77777775345554 45555555554
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.23 E-value=5e-13 Score=157.17 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=92.6
Q ss_pred CCCCceEeeeccccCCCCCCCCCCchhhhc-CCCceeEEeeCCC-CCCC--cCccccCCCcccEEeccCCCccc-----c
Q 047584 569 DIQHLRTFLPVMLTNSGPCYLAPSILPKLL-KLQRLRVFSLRGY-CIPE--LPDSVGDLRYLRYLNLSGTVIRS-----L 639 (883)
Q Consensus 569 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~-~l~~Lr~L~L~~~-~~~~--lp~~i~~l~~L~~L~L~~~~i~~-----l 639 (883)
.+++|+.|.+..+. +....+..+. .+++|++|+|++| .+.. ++..+.++++|++|+|++|.++. +
T Consensus 103 ~~~~L~~L~L~~~~------~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV------VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HCTTCCEEEEESCB------CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred hCCCCCeEEeeCcE------EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 57788888876543 4555566666 7899999999999 4544 55555689999999999998764 3
Q ss_pred ccccccCCCccEEecCCCC-ch--hhchhhhcCcCCCCceecCCCCCccccCccCCCCCCCCccC
Q 047584 640 PESVNKLYNLHSLLLEDCD-RL--KKLCADMGNLIKLHHLKNSNTDSLEEMPLGIVRLTCLQTLC 701 (883)
Q Consensus 640 p~~i~~l~~L~~L~l~~c~-~l--~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 701 (883)
+.....+++|++|++++|. .+ ..++.-+..+++|++|++++|..+..+|..+..+++|+.|.
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 3344478899999999975 12 23444446689999999999965666666666677777663
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.23 E-value=2.2e-11 Score=121.82 Aligned_cols=82 Identities=23% Similarity=0.356 Sum_probs=53.2
Q ss_pred eEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccc-cccCCCccEEecCCCCchhhchhh-hcCcCCCCceecCCC
Q 047584 604 RVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLKNSNT 681 (883)
Q Consensus 604 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~ 681 (883)
+.++++++.++.+|..+ ..+|++|++++|.++.+|.. +.++++|++|++++| .+..+|.. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 45666666677776554 34677777777777766553 567777777777773 45555543 567777777777776
Q ss_pred CCccccCc
Q 047584 682 DSLEEMPL 689 (883)
Q Consensus 682 ~~~~~~p~ 689 (883)
. +..+|.
T Consensus 87 ~-l~~~~~ 93 (208)
T 2o6s_A 87 Q-LQSLPN 93 (208)
T ss_dssp C-CCCCCT
T ss_pred c-CCccCH
Confidence 5 444443
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=4.2e-11 Score=124.43 Aligned_cols=98 Identities=24% Similarity=0.279 Sum_probs=77.0
Q ss_pred hhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCc
Q 047584 596 KLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHH 675 (883)
Q Consensus 596 ~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~ 675 (883)
.+..+++|++|++++|.+..+| .+..+++|++|+|++|.++.+|. +.++++|++|++++| .+..+|... . ++|++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~-~-~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIP-S-ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCC-C-SSCCE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCccc-c-CcccE
Confidence 3457888899999999888887 68888899999999998888877 888899999999884 566676533 3 88999
Q ss_pred eecCCCCCccccCccCCCCCCCCcc
Q 047584 676 LKNSNTDSLEEMPLGIVRLTCLQTL 700 (883)
Q Consensus 676 L~l~~~~~~~~~p~~i~~L~~L~~L 700 (883)
|++++|. +..+| .++.+++|++|
T Consensus 111 L~L~~N~-l~~~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 111 LFLDNNE-LRDTD-SLIHLKNLEIL 133 (263)
T ss_dssp EECCSSC-CSBSG-GGTTCTTCCEE
T ss_pred EEccCCc-cCCCh-hhcCcccccEE
Confidence 9998887 66654 46666666666
No 120
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.22 E-value=1.4e-10 Score=119.21 Aligned_cols=197 Identities=16% Similarity=0.127 Sum_probs=120.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
..++||+..++.|..++.... ..+.+.|+|++|+||||||+.+++... ..+.... ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~--~~~~~~~----~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLN--CETGITA----TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHH--CTTCSCS----SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhc--CCCCCCC----CCCcccHH-HHHHh
Confidence 569999999999999996542 135889999999999999999987432 2111000 00000000 00010
Q ss_pred HHhcc-----CCCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChh-H
Q 047584 268 SSITK-----QTVDNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEE-V 336 (883)
Q Consensus 268 ~~l~~-----~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-v 336 (883)
..... ........+.+.. +.+.+ .+++.+||+||++..+...+..+...+.....+..+|+||+... +
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHH-HHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHHHHH-HHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00000 0000011111111 22221 35689999999987766777777766665556788888887643 2
Q ss_pred HH-hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhh
Q 047584 337 AK-IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLL 401 (883)
Q Consensus 337 a~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 401 (883)
.. .......+.+++++.++..+++...+..... .--++....|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 1223467999999999999999887643211 1114667899999999999888766443
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=2.7e-11 Score=132.49 Aligned_cols=93 Identities=27% Similarity=0.354 Sum_probs=67.8
Q ss_pred eEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccc-cc-cCCCccEEecCCCCchhhch-hhhcCcCCCCceecCC
Q 047584 604 RVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPES-VN-KLYNLHSLLLEDCDRLKKLC-ADMGNLIKLHHLKNSN 680 (883)
Q Consensus 604 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~l~~c~~l~~lp-~~i~~L~~L~~L~l~~ 680 (883)
++++++++.++.+|..+. ..+++|+|++|.++.+|.. +. ++.+|++|+|++| .+..+| ..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 578888888888887664 3578888888888888654 44 7888888888884 566665 4588888888888888
Q ss_pred CCCccccCcc-CCCCCCCCcc
Q 047584 681 TDSLEEMPLG-IVRLTCLQTL 700 (883)
Q Consensus 681 ~~~~~~~p~~-i~~L~~L~~L 700 (883)
|. +..+|.. +..+++|++|
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEE
T ss_pred Cc-CCcCCHHHhCCCcCCCEE
Confidence 87 6666542 5555555555
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=2.1e-11 Score=114.85 Aligned_cols=122 Identities=18% Similarity=0.155 Sum_probs=90.2
Q ss_pred CCceEeeeccccCCCCCCCC-CCchhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccc-cccccccCCC
Q 047584 571 QHLRTFLPVMLTNSGPCYLA-PSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRS-LPESVNKLYN 648 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~-~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~l~~ 648 (883)
++++.|.+.++. +. ..++..+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. +|..+.++++
T Consensus 17 ~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 455566554433 22 22333345788899999999988877 678888999999999998887 7777778899
Q ss_pred ccEEecCCCCchhhch--hhhcCcCCCCceecCCCCCccccCc----cCCCCCCCCccC
Q 047584 649 LHSLLLEDCDRLKKLC--ADMGNLIKLHHLKNSNTDSLEEMPL----GIVRLTCLQTLC 701 (883)
Q Consensus 649 L~~L~l~~c~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~ 701 (883)
|++|++++| .+..+| ..+..+++|++|++++|. +..+|. .++.+++|+.|.
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 999999885 466554 678888999999998887 676665 467777777763
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=3.5e-11 Score=115.84 Aligned_cols=104 Identities=24% Similarity=0.224 Sum_probs=75.6
Q ss_pred hcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccc-cccccccCCCccEEecCCCCchhhch--hhhcCcCCC
Q 047584 597 LLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRS-LPESVNKLYNLHSLLLEDCDRLKKLC--ADMGNLIKL 673 (883)
Q Consensus 597 l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~l~~c~~l~~lp--~~i~~L~~L 673 (883)
+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. +|..+.++++|++|++++| .+..+| ..+..+++|
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L 122 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECL 122 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCC
T ss_pred HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCC
Confidence 34677788888888887777 667778888888888888776 6666666888888888874 566655 567778888
Q ss_pred CceecCCCCCccccCc----cCCCCCCCCccCce
Q 047584 674 HHLKNSNTDSLEEMPL----GIVRLTCLQTLCNF 703 (883)
Q Consensus 674 ~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~ 703 (883)
++|++++|. +..+|. .+..+++|++|...
T Consensus 123 ~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 123 KSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp CEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTE
T ss_pred CEEEeeCCc-CcchHHHHHHHHHhCccCcEecCC
Confidence 888888776 666665 56677777777443
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=5.4e-11 Score=115.50 Aligned_cols=127 Identities=17% Similarity=0.119 Sum_probs=97.3
Q ss_pred cccCCCCceEeeeccccCCCCCCCCCCchhhhcCCC-ceeEEeeCCCCCCCcCccccCCCcccEEeccCCCcccccccc-
Q 047584 566 DLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQ-RLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESV- 643 (883)
Q Consensus 566 ~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~-~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i- 643 (883)
.+.++.+|+.|.+.++.. . . .+.+..+. +|++|+|++|.++.+ ..++.+++|++|++++|.++.+|+.+
T Consensus 14 ~~~~~~~L~~L~l~~n~l------~-~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKI------P-V-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSCC------C-S-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred hcCCcCCceEEEeeCCCC------c-h-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchh
Confidence 345667778777655442 1 1 13345444 899999999998888 67888999999999999999888665
Q ss_pred ccCCCccEEecCCCCchhhchh--hhcCcCCCCceecCCCCCccccCcc----CCCCCCCCccCce
Q 047584 644 NKLYNLHSLLLEDCDRLKKLCA--DMGNLIKLHHLKNSNTDSLEEMPLG----IVRLTCLQTLCNF 703 (883)
Q Consensus 644 ~~l~~L~~L~l~~c~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~ 703 (883)
..+++|++|++++| .+..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|...
T Consensus 85 ~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 85 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCC
Confidence 88999999999984 5677776 78889999999999988 6777764 7777777777443
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.15 E-value=1.3e-10 Score=117.22 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=52.4
Q ss_pred CceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCcccc-ccccccCCCccEEecCCCCchhhchhh-hcCcCCCCcee
Q 047584 601 QRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLK 677 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~ 677 (883)
+.|+.|+|++|.+..+|. .+..+++|++|+|++|.++.+ |..+.++++|++|+|++ +.+..+|.. +..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEE
Confidence 345666666666555543 455566666666666666555 44555666666666665 344455543 35566666666
Q ss_pred cCCCCCccccC-ccCCCCCCCCcc
Q 047584 678 NSNTDSLEEMP-LGIVRLTCLQTL 700 (883)
Q Consensus 678 l~~~~~~~~~p-~~i~~L~~L~~L 700 (883)
+++|. +..++ ..+..+++|++|
T Consensus 111 L~~N~-l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 111 LNANK-INCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCC-CCEeCHHHcCCCCCCCEE
Confidence 66555 33332 234444444443
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.14 E-value=1.4e-10 Score=117.80 Aligned_cols=122 Identities=21% Similarity=0.291 Sum_probs=78.0
Q ss_pred CCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCcc-ccCCCcccEEeccCCCccccccc-cccCCC
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDS-VGDLRYLRYLNLSGTVIRSLPES-VNKLYN 648 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~ 648 (883)
++|+.|.+..+. +..-.+..+.++++|++|+|++|.+..+|.. +..+++|++|+|++|.++.+|.. +..+++
T Consensus 40 ~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEcCCCc------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 556666554433 2222233344677777777777777776543 46777777777777777777654 467777
Q ss_pred ccEEecCCCCchhhchhhhcCcCCCCceecCCCCCccccCcc-CCCCCCCCcc
Q 047584 649 LHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNTDSLEEMPLG-IVRLTCLQTL 700 (883)
Q Consensus 649 L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L 700 (883)
|++|++++ +.+..+|..+..+++|++|++++|. +..+|.. +..+++|++|
T Consensus 114 L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 114 LKELFMCC-NKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CCEEECCS-SCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred hCeEeccC-CcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEE
Confidence 77777777 4566777777777777777777776 5666542 5555555555
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.13 E-value=1.1e-09 Score=110.62 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=118.3
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCC-eEEEEEeCCCCCHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 266 (883)
..++||+..++.+.+++.... .+.+.|+|++|+|||+||+.+++... ...+. ..+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 568999999999999996542 23489999999999999999987321 11221 23444444433333222211
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhH--HHhcCCCc
Q 047584 267 LSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEV--AKIMSLDQ 344 (883)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v--a~~~~~~~ 344 (883)
..+..... .-.+++.+||+||++.........+...+.....+.++|+||+.... ........
T Consensus 90 -~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 -KEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp -HHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred -HHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11110000 01257899999999877666666666666555567788888876431 11122234
Q ss_pred cEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHH
Q 047584 345 AYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLG 398 (883)
Q Consensus 345 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 398 (883)
.+.+.+++.++...++.+.+..... . --++....|++.++|.|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGV-K---ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7899999999999999887642111 1 114567889999999998655443
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=1.7e-10 Score=110.93 Aligned_cols=137 Identities=24% Similarity=0.245 Sum_probs=107.9
Q ss_pred cCCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCC-cCccccC
Q 047584 544 FSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPE-LPDSVGD 622 (883)
Q Consensus 544 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~-lp~~i~~ 622 (883)
.+..+++|.+..+......-...+..+++|+.|.+..+. +.. . ..+..+++|++|+|++|.+.. +|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------CCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------CCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 456788888876654311111234678889999877654 221 1 556689999999999999988 7777778
Q ss_pred CCcccEEeccCCCccccc--cccccCCCccEEecCCCCchhhchh----hhcCcCCCCceecCCCCCccccCcc
Q 047584 623 LRYLRYLNLSGTVIRSLP--ESVNKLYNLHSLLLEDCDRLKKLCA----DMGNLIKLHHLKNSNTDSLEEMPLG 690 (883)
Q Consensus 623 l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~l~~c~~l~~lp~----~i~~L~~L~~L~l~~~~~~~~~p~~ 690 (883)
+++|++|++++|.++.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++++|. ...+|..
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 999999999999999987 78999999999999995 6777776 78999999999999997 6777754
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=4e-11 Score=112.87 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=85.9
Q ss_pred CCCceeEEeeCCCCCC--CcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCce
Q 047584 599 KLQRLRVFSLRGYCIP--ELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHL 676 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L 676 (883)
..++|+.|++++|.+. .+|..++.+++|++|++++|.++.+ ..++++++|++|++++|.....+|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999998 7898889999999999999999988 789999999999999964433388888889999999
Q ss_pred ecCCCCCccccC--ccCCCCCCCCcc
Q 047584 677 KNSNTDSLEEMP--LGIVRLTCLQTL 700 (883)
Q Consensus 677 ~l~~~~~~~~~p--~~i~~L~~L~~L 700 (883)
++++|. +..+| ..++.+++|++|
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEE
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEE
Confidence 999998 66654 667777777776
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.10 E-value=2e-10 Score=116.64 Aligned_cols=98 Identities=30% Similarity=0.390 Sum_probs=86.4
Q ss_pred CceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCccccccc-cccCCCccEEecCCCCchhhchhh-hcCcCCCCcee
Q 047584 601 QRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLK 677 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~ 677 (883)
++|++|+|++|.+..+ |..+..+.+|++|+|++|.++.+|.. +..+++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 7899999999999887 66789999999999999999999864 689999999999995 67777654 68999999999
Q ss_pred cCCCCCccccCccCCCCCCCCcc
Q 047584 678 NSNTDSLEEMPLGIVRLTCLQTL 700 (883)
Q Consensus 678 l~~~~~~~~~p~~i~~L~~L~~L 700 (883)
+++|. +..+|..+..+++|++|
T Consensus 119 Ls~N~-l~~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 119 MCCNK-LTELPRGIERLTHLTHL 140 (229)
T ss_dssp CCSSC-CCSCCTTGGGCTTCSEE
T ss_pred ccCCc-ccccCcccccCCCCCEE
Confidence 99998 88899888888888877
No 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.10 E-value=2.1e-10 Score=115.71 Aligned_cols=121 Identities=29% Similarity=0.415 Sum_probs=95.4
Q ss_pred CCceEeeeccccCCCCCCCCCCchh-hhcCCCceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCccccccc-cccCC
Q 047584 571 QHLRTFLPVMLTNSGPCYLAPSILP-KLLKLQRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSLPES-VNKLY 647 (883)
Q Consensus 571 ~~lrsl~~~~~~~~~~~~~~~~~~~-~l~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~ 647 (883)
++++.|.+..+. +. .+++ .+..+++|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. +.+++
T Consensus 32 ~~l~~L~l~~n~------i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNT------IK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSC------CC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCEEECCCCc------CC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence 567777665443 22 2222 345789999999999999887 77899999999999999999999876 57899
Q ss_pred CccEEecCCCCchhhc-hhhhcCcCCCCceecCCCCCccccCcc-CCCCCCCCcc
Q 047584 648 NLHSLLLEDCDRLKKL-CADMGNLIKLHHLKNSNTDSLEEMPLG-IVRLTCLQTL 700 (883)
Q Consensus 648 ~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L 700 (883)
+|++|+|++| .+..+ |..+..+++|++|++++|. +..+|.. +..+++|++|
T Consensus 105 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 105 SLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEE
Confidence 9999999995 55555 5678999999999999998 7777654 7777777766
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.05 E-value=4.3e-10 Score=113.40 Aligned_cols=101 Identities=18% Similarity=0.249 Sum_probs=68.9
Q ss_pred cCCCceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCcccccc-ccccCCCccEEecCCCCchhhc-hhhhcCcCCCC
Q 047584 598 LKLQRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLKKL-CADMGNLIKLH 674 (883)
Q Consensus 598 ~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l-p~~i~~L~~L~ 674 (883)
.++++|++|+|++|.++.++. .+.++.+|++|+|++|.++.+|. .+.++++|++|+|++| .+..+ |..+..+++|+
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCS
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCC
Confidence 367777777777777776654 56777777777777777776654 3667777777777774 34444 55677777777
Q ss_pred ceecCCCCCcccc-CccCCCCCCCCcc
Q 047584 675 HLKNSNTDSLEEM-PLGIVRLTCLQTL 700 (883)
Q Consensus 675 ~L~l~~~~~~~~~-p~~i~~L~~L~~L 700 (883)
+|++++|. +..+ |..+..+++|++|
T Consensus 133 ~L~L~~N~-l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 133 LLSLYDNQ-ITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp EEECTTSC-CCCBCTTTTTTCTTCCEE
T ss_pred EEECCCCc-CCEECHHHhcCCCCCCEE
Confidence 77777776 5544 4556666666655
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.04 E-value=1.8e-10 Score=137.22 Aligned_cols=89 Identities=28% Similarity=0.424 Sum_probs=51.6
Q ss_pred chhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCC
Q 047584 593 ILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIK 672 (883)
Q Consensus 593 ~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~ 672 (883)
++..++++++|++|+|++|.++.+|..+++|.+|++|+|++|.|+.+|..|++|.+|++|+|++| .+..+|..|+.|++
T Consensus 239 l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~ 317 (727)
T 4b8c_D 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCN 317 (727)
T ss_dssp CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTT
T ss_pred CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCC
Confidence 33444455566666666666555555555666666666666666655655666666666666553 44555555556666
Q ss_pred CCceecCCCC
Q 047584 673 LHHLKNSNTD 682 (883)
Q Consensus 673 L~~L~l~~~~ 682 (883)
|++|+|++|.
T Consensus 318 L~~L~L~~N~ 327 (727)
T 4b8c_D 318 LQFLGVEGNP 327 (727)
T ss_dssp CCCEECTTSC
T ss_pred ccEEeCCCCc
Confidence 6666666555
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=4.1e-11 Score=142.85 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=88.6
Q ss_pred hcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCce
Q 047584 597 LLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHL 676 (883)
Q Consensus 597 l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L 676 (883)
+..++.|++|+|++|.+..+|..+.++.+|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..++.|++|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEE
Confidence 4478889999999999988888888899999999999999999988999999999999985 566888889999999999
Q ss_pred ecCCCCCccccCccCCCCCCCCcc
Q 047584 677 KNSNTDSLEEMPLGIVRLTCLQTL 700 (883)
Q Consensus 677 ~l~~~~~~~~~p~~i~~L~~L~~L 700 (883)
+|++|. +..+|.+|++|++|++|
T Consensus 299 ~L~~N~-l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 299 YFFDNM-VTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp ECCSSC-CCCCCSSTTSCTTCCCE
T ss_pred ECCCCC-CCccChhhhcCCCccEE
Confidence 999887 78888888888888888
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.03 E-value=2.2e-10 Score=111.09 Aligned_cols=99 Identities=27% Similarity=0.390 Sum_probs=83.0
Q ss_pred cCCCceeEEeeCCCCCCCcCccccCCC-cccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhh-cCcCCCCc
Q 047584 598 LKLQRLRVFSLRGYCIPELPDSVGDLR-YLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLIKLHH 675 (883)
Q Consensus 598 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i-~~L~~L~~ 675 (883)
.++.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ +.+..+++|++|++++| .+..+|..+ ..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 478899999999999998865 55555 999999999999998 68999999999999994 677888665 89999999
Q ss_pred eecCCCCCccccCc--cCCCCCCCCcc
Q 047584 676 LKNSNTDSLEEMPL--GIVRLTCLQTL 700 (883)
Q Consensus 676 L~l~~~~~~~~~p~--~i~~L~~L~~L 700 (883)
|++++|. +..+|. .++.+++|++|
T Consensus 93 L~L~~N~-i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 93 LILTNNS-LVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp EECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred EECCCCc-CCcchhhHhhhcCCCCCEE
Confidence 9999998 777775 56666666655
No 136
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.03 E-value=9.6e-10 Score=110.79 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=103.5
Q ss_pred cCCCeeEEEeEecCCccccccccccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCc-cccC
Q 047584 544 FSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPD-SVGD 622 (883)
Q Consensus 544 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~-~i~~ 622 (883)
++..++.|.+..+..........+..+++|+.|.+..+. +..-....+.++++|++|+|++|.++.+|. .+..
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 103 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK------ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG 103 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc------CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC
Confidence 455677888776655433222336678899999876554 222222345689999999999999998865 4899
Q ss_pred CCcccEEeccCCCcccc-ccccccCCCccEEecCCCCchhhc-hhhhcCcCCCCceecCCCC
Q 047584 623 LRYLRYLNLSGTVIRSL-PESVNKLYNLHSLLLEDCDRLKKL-CADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 623 l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~ 682 (883)
+++|++|+|++|.++.+ |..+.++++|++|+|++| .+..+ |..+..+++|++|++++|.
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 99999999999999988 678999999999999995 56666 7789999999999999997
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.01 E-value=5.2e-10 Score=129.13 Aligned_cols=101 Identities=23% Similarity=0.252 Sum_probs=77.5
Q ss_pred hcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhc--hhhhcCcCCCC
Q 047584 597 LLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKL--CADMGNLIKLH 674 (883)
Q Consensus 597 l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l--p~~i~~L~~L~ 674 (883)
+.++++|++|+|++|.++.+|..++.+++|++|+|++|.++.+| .++++++|++|+|++| .+..+ |..++.+++|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCC
Confidence 55778888888888888888888888888888888888888887 7888888888888884 56666 77888888888
Q ss_pred ceecCCCCCccccCccCCC----CCCCCcc
Q 047584 675 HLKNSNTDSLEEMPLGIVR----LTCLQTL 700 (883)
Q Consensus 675 ~L~l~~~~~~~~~p~~i~~----L~~L~~L 700 (883)
+|++++|. +..+|+.+.. +++|+.|
T Consensus 537 ~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 537 LLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred EEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 88888887 6666654432 4455444
No 138
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.00 E-value=1.4e-09 Score=108.54 Aligned_cols=88 Identities=32% Similarity=0.506 Sum_probs=44.2
Q ss_pred CCCceeEEeeCCCCCCCcCcc-ccCCCcccEEeccCCCccccccc-cccCCCccEEecCCCCchhhchhh-hcCcCCCCc
Q 047584 599 KLQRLRVFSLRGYCIPELPDS-VGDLRYLRYLNLSGTVIRSLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHH 675 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~ 675 (883)
++++|++|++++|.++.+|.. +..+++|++|++++|.++.+|.. +.++++|++|++++| .+..+|.. +..+++|++
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCE
Confidence 455555555555555554432 34555555555555555555433 345555555555552 33344332 455555555
Q ss_pred eecCCCCCccccC
Q 047584 676 LKNSNTDSLEEMP 688 (883)
Q Consensus 676 L~l~~~~~~~~~p 688 (883)
|++++|. +..+|
T Consensus 129 L~l~~N~-l~~~~ 140 (208)
T 2o6s_A 129 LRLYQNQ-LKSVP 140 (208)
T ss_dssp EECCSSC-CSCCC
T ss_pred EECCCCc-cceeC
Confidence 5555554 33343
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=5e-10 Score=129.26 Aligned_cols=95 Identities=26% Similarity=0.308 Sum_probs=87.9
Q ss_pred ceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCCceecCCC
Q 047584 602 RLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNSNT 681 (883)
Q Consensus 602 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~ 681 (883)
.|++|+|++|.++.+|. ++.+++|++|+|++|.++.+|..++++++|++|+|++ +.+..+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCCC
Confidence 58999999999999997 9999999999999999999999999999999999999 5677788 8999999999999999
Q ss_pred CCcccc--CccCCCCCCCCcc
Q 047584 682 DSLEEM--PLGIVRLTCLQTL 700 (883)
Q Consensus 682 ~~~~~~--p~~i~~L~~L~~L 700 (883)
. +..+ |..++.+++|++|
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEE
T ss_pred C-CCCCCCcHHHhcCCCCCEE
Confidence 8 7777 8889998888888
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.96 E-value=1.2e-09 Score=107.39 Aligned_cols=98 Identities=23% Similarity=0.373 Sum_probs=74.1
Q ss_pred CceeEEeeCCCCCCCcCccccCCCcccEEeccCCCcccccc-ccccCCCccEEecCCCCchhhchh-hhcCcCCCCceec
Q 047584 601 QRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLKN 678 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l 678 (883)
+.|++|+|++|.++.+|..+.++.+|++|+|++|.|+.++. .|.++++|++|+|++| .+..+|. .+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEEC
Confidence 46788888888888888888888888888888888887754 5778888888888884 4555553 5788888888888
Q ss_pred CCCCCccccCcc-CCCCCCCCcc
Q 047584 679 SNTDSLEEMPLG-IVRLTCLQTL 700 (883)
Q Consensus 679 ~~~~~~~~~p~~-i~~L~~L~~L 700 (883)
++|. +..+|.. +..+++|+.|
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEE
T ss_pred CCCC-CCeeChhhhhcCccccEE
Confidence 8887 6667654 5666666665
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.96 E-value=1.3e-09 Score=107.18 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=35.5
Q ss_pred eEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccc--cccCCCccEEecCCCCchhhc-hhhhcCcCCCCceecCC
Q 047584 604 RVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPES--VNKLYNLHSLLLEDCDRLKKL-CADMGNLIKLHHLKNSN 680 (883)
Q Consensus 604 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~ 680 (883)
++++++++.+..+|..+.. +|++|++++|.++.+|.. +.++++|++|+|++| .+..+ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 3445555555545444332 455555555555544432 445555555555542 22222 34444555555555555
Q ss_pred CC
Q 047584 681 TD 682 (883)
Q Consensus 681 ~~ 682 (883)
|.
T Consensus 88 N~ 89 (192)
T 1w8a_A 88 NK 89 (192)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.95 E-value=2.5e-09 Score=105.16 Aligned_cols=93 Identities=23% Similarity=0.301 Sum_probs=80.5
Q ss_pred eEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhch-hhhcCcCCCCceecCCCC
Q 047584 604 RVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 604 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp-~~i~~L~~L~~L~l~~~~ 682 (883)
++++++++.++.+|..+. .+|++|+|++|.++.+|..+.++++|++|++++| .+..++ ..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 689999999999998764 6899999999999999999999999999999995 566665 469999999999999998
Q ss_pred CccccCc-cCCCCCCCCcc
Q 047584 683 SLEEMPL-GIVRLTCLQTL 700 (883)
Q Consensus 683 ~~~~~p~-~i~~L~~L~~L 700 (883)
+..+|+ .++.+++|++|
T Consensus 90 -l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEE
T ss_pred -cCEeCHHHhCCCCCCCEE
Confidence 777765 47777777777
No 143
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=8.2e-09 Score=110.84 Aligned_cols=185 Identities=16% Similarity=0.177 Sum_probs=117.0
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC-CeEEEEEeCCCCCHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF-DLKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 266 (883)
..++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++... ...+ ...++++.+....... .+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 569999999999999996542 23389999999999999999987421 1111 1234444433222222 2222
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChh-H-HHhcCCC
Q 047584 267 LSSITKQTVDNNDLNFLQEELKKQL-SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEE-V-AKIMSLD 343 (883)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-v-a~~~~~~ 343 (883)
+..+..... .+ .+++.+||+||++......+..+...+.....++++|+||.... + .......
T Consensus 93 ~~~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 222210000 01 35689999999987766666666666655556778888876632 1 1222334
Q ss_pred ccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHH-HHHHH
Q 047584 344 QAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLA-AKTLG 398 (883)
Q Consensus 344 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLa-i~~~~ 398 (883)
..+.+.+++.++...++...+..... . --++.+..|++.|+|.|.. +..+.
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDV-K---YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 58999999999999999876532111 1 1145678899999999954 44443
No 144
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.92 E-value=1.7e-09 Score=118.14 Aligned_cols=90 Identities=22% Similarity=0.346 Sum_probs=51.7
Q ss_pred CCCceeEEeeCCCCCCCcC-ccccCCCcccEEeccCCCcccccc-ccccCCCccEEecCCCCchhhc-hhhhcCcCCCCc
Q 047584 599 KLQRLRVFSLRGYCIPELP-DSVGDLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLKKL-CADMGNLIKLHH 675 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~ 675 (883)
++++|++|+|++|.+..++ ..+.++++|++|+|++|.++.+|. .+.++.+|++|+|++| .+..+ |..+..+++|++
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCE
Confidence 5566666666666666554 345666666666666666665544 3556666666666663 33333 345566666666
Q ss_pred eecCCCCCccccCcc
Q 047584 676 LKNSNTDSLEEMPLG 690 (883)
Q Consensus 676 L~l~~~~~~~~~p~~ 690 (883)
|++++|. +..+|..
T Consensus 141 L~L~~N~-l~~l~~~ 154 (361)
T 2xot_A 141 LYLSQNQ-ISRFPVE 154 (361)
T ss_dssp EECCSSC-CCSCCGG
T ss_pred EECCCCc-CCeeCHH
Confidence 6666665 5555544
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.91 E-value=2.3e-09 Score=115.32 Aligned_cols=268 Identities=15% Similarity=0.095 Sum_probs=145.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
..++|++..++.+..++..... .......+.|+|++|+|||++|+.+++. ... ..++++.+......++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l~---- 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDLA---- 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHHH----
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHHH----
Confidence 5699999999988888753110 0012356889999999999999999873 222 23344443322222211
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCC------------------CCCcEEEE
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAG------------------AQGSKIVV 329 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~ilv 329 (883)
..+... ..++.+|+||++..........+...+... ..+.++|.
T Consensus 82 -----------------~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 82 -----------------AILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp -----------------HHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred -----------------HHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 111110 135668899999776544444443322211 02345666
Q ss_pred eCCChh-HHHhc-C-CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHhhhcCC--
Q 047584 330 TTRNEE-VAKIM-S-LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGGLLHGK-- 404 (883)
Q Consensus 330 TTR~~~-va~~~-~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~-- 404 (883)
||.... +.... . ....+.+.+++.++...++...+..... . --++....|++.++|.|-.+..+...+...
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-R---ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-C---CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 665432 11111 1 1247899999999999998877643221 1 114667889999999998876665443211
Q ss_pred ----C--ChHHHHHHHhcccccCCCCCCCchhHHHHhhcCCChhHHHHhhHhc-cCCCC----------ceeCHHHHHH-
Q 047584 405 ----P--YKREWKGVLSSKIWELPEDRCPIIPALAVSYYYLPPILKQCFAYCS-LFPKD----------YEFDEEEIIL- 466 (883)
Q Consensus 405 ----~--~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s-~fp~~----------~~i~~~~li~- 466 (883)
. +.+....++... ...+..++...+..+..+. .|..+ ..+++..+.+
T Consensus 220 ~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 220 VAGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 1 123333333221 1122334444444443322 22111 0133333322
Q ss_pred ---HHHhCCCCcCCCCCCChHHHHHHHHH-HHHhcCcccc
Q 047584 467 ---LWCASGFLDHKESGNPNEDLGRKFFQ-ELRSRSFFQQ 502 (883)
Q Consensus 467 ---~Wiaeg~i~~~~~~~~~e~~~~~~l~-~L~~~sllq~ 502 (883)
+-+..|++.....+....+.|..||. ++.+|+|||+
T Consensus 285 l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 34567888765566777888889987 8889998885
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.89 E-value=2.6e-09 Score=105.12 Aligned_cols=97 Identities=18% Similarity=0.271 Sum_probs=64.5
Q ss_pred ceeEEeeCCCCCCCcCcc--ccCCCcccEEeccCCCcccc-ccccccCCCccEEecCCCCchhhchh-hhcCcCCCCcee
Q 047584 602 RLRVFSLRGYCIPELPDS--VGDLRYLRYLNLSGTVIRSL-PESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLK 677 (883)
Q Consensus 602 ~Lr~L~L~~~~~~~lp~~--i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~ 677 (883)
+|++|+|++|.+..++.. ++.+++|++|+|++|.++.+ |..+.++++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 667777777777776543 67777777777777777766 556777777777777774 4444443 366777777777
Q ss_pred cCCCCCcccc-CccCCCCCCCCcc
Q 047584 678 NSNTDSLEEM-PLGIVRLTCLQTL 700 (883)
Q Consensus 678 l~~~~~~~~~-p~~i~~L~~L~~L 700 (883)
+++|. +..+ |..++.+++|++|
T Consensus 109 L~~N~-l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 109 LYDNQ-ISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp CCSSC-CCEECTTSSTTCTTCCEE
T ss_pred CCCCc-CCeeCHHHhhcCCCCCEE
Confidence 77776 4433 5556666666555
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.84 E-value=5.3e-09 Score=100.92 Aligned_cols=86 Identities=24% Similarity=0.305 Sum_probs=51.1
Q ss_pred CceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCccccccc-cccCCCccEEecCCCCchhhchhh-hcCcCCCCcee
Q 047584 601 QRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLK 677 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~ 677 (883)
++|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. +.++++|++|+|++ +.+..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEE
Confidence 5566666666666655 34556666666666666666666554 35666666666666 345555543 56666666666
Q ss_pred cCCCCCccccC
Q 047584 678 NSNTDSLEEMP 688 (883)
Q Consensus 678 l~~~~~~~~~p 688 (883)
+++|. +...|
T Consensus 112 L~~N~-~~c~~ 121 (174)
T 2r9u_A 112 LYNNP-WDCEC 121 (174)
T ss_dssp CCSSC-BCTTB
T ss_pred eCCCC-ccccc
Confidence 66665 44333
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.84 E-value=3.3e-09 Score=102.40 Aligned_cols=94 Identities=20% Similarity=0.374 Sum_probs=82.8
Q ss_pred eEEeeCCCCCCCcCccccCCCcccEEeccCCCcccc-ccccccCCCccEEecCCCCchhhchhh-hcCcCCCCceecCCC
Q 047584 604 RVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLKNSNT 681 (883)
Q Consensus 604 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~ 681 (883)
+.++++++.+..+|..+. .+|++|+|++|.++.+ |..+.++++|++|+|++ +.+..+|.. +..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCC
Confidence 689999999999998775 8999999999999988 56789999999999999 578888876 589999999999999
Q ss_pred CCccccCcc-CCCCCCCCccC
Q 047584 682 DSLEEMPLG-IVRLTCLQTLC 701 (883)
Q Consensus 682 ~~~~~~p~~-i~~L~~L~~L~ 701 (883)
. +..+|.. ++.+++|++|.
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEE
T ss_pred c-cceeCHHHhccccCCCEEE
Confidence 8 8888876 88888888883
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=6.7e-09 Score=99.82 Aligned_cols=93 Identities=24% Similarity=0.392 Sum_probs=46.2
Q ss_pred eEEeeCCCCCCCcCccccCCCcccEEeccCCCcccc-ccccccCCCccEEecCCCCchhhchhh-hcCcCCCCceecCCC
Q 047584 604 RVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLKNSNT 681 (883)
Q Consensus 604 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~ 681 (883)
+.++++++.++.+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++ +.+..+|.. +..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCC
Confidence 445555555555554442 4555555555555554 33455555555555555 234444433 345555555555555
Q ss_pred CCccccCcc-CCCCCCCCcc
Q 047584 682 DSLEEMPLG-IVRLTCLQTL 700 (883)
Q Consensus 682 ~~~~~~p~~-i~~L~~L~~L 700 (883)
. +..+|+. ++.+++|++|
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEE
T ss_pred c-cCEeCHHHhcCCCCCCEE
Confidence 4 4444432 4444444444
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=1.3e-08 Score=109.50 Aligned_cols=240 Identities=10% Similarity=0.078 Sum_probs=117.3
Q ss_pred CCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCcccccc-cccc--------CCCccEEecCCCCchhhchh-hhcC
Q 047584 600 LQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPE-SVNK--------LYNLHSLLLEDCDRLKKLCA-DMGN 669 (883)
Q Consensus 600 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~--------l~~L~~L~l~~c~~l~~lp~-~i~~ 669 (883)
+++|++|||++|.+......-+.+..++++.+..+ .+|. .|.+ +.+|+.|++.+ .+..++. .|..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence 78899999999988722111222333555555555 3432 4556 88888888876 4566654 4788
Q ss_pred cCCCCceecCCCCCccccCcc-CCCCCCCCccCceEeC---cCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhc
Q 047584 670 LIKLHHLKNSNTDSLEEMPLG-IVRLTCLQTLCNFVVA---KDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQM 745 (883)
Q Consensus 670 L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~---~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l 745 (883)
+++|+.|++++|. +..+++. |..+.++..+..-... ......-..+.++..|+..+.+.. ...........-
T Consensus 123 ~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~---~~~l~~~~~~~~ 198 (329)
T 3sb4_A 123 CDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA---MGKLEDEIMKAG 198 (329)
T ss_dssp CTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECT---TCCHHHHHHHTT
T ss_pred CcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecC---CCcHHHHHhhcc
Confidence 8888888888876 4455433 5554444444211000 000000011222233321222221 111222222222
Q ss_pred CCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCC
Q 047584 746 DGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTAL 825 (883)
Q Consensus 746 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l 825 (883)
-...++..+.+... . .......+. ..+++|+.|++++|....+|..... .+++|++|+|.++ +..+
T Consensus 199 ~~~~~~~~l~~~~~--l-------~~~~~~~l~--~~~~~L~~l~L~~n~i~~I~~~aF~-~~~~L~~l~l~~n--i~~I 264 (329)
T 3sb4_A 199 LQPRDINFLTIEGK--L-------DNADFKLIR--DYMPNLVSLDISKTNATTIPDFTFA-QKKYLLKIKLPHN--LKTI 264 (329)
T ss_dssp CCGGGCSEEEEEEC--C-------CHHHHHHHH--HHCTTCCEEECTTBCCCEECTTTTT-TCTTCCEEECCTT--CCEE
T ss_pred cCccccceEEEeee--e-------cHHHHHHHH--HhcCCCeEEECCCCCcceecHhhhh-CCCCCCEEECCcc--ccee
Confidence 23445555555441 0 001111111 1245666666666666666554432 3566666666664 3344
Q ss_pred C--CCCCcCccc-ceeccCcccceecCCCccCCCCCCCCCCcceeec
Q 047584 826 P--SVGQLPSLK-HLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRF 869 (883)
Q Consensus 826 ~--~l~~lp~L~-~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l 869 (883)
+ .+..+++|+ .|+|.+ .++.|+...+. .+++|+.|.+
T Consensus 265 ~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~-----~c~~L~~l~l 304 (329)
T 3sb4_A 265 GQRVFSNCGRLAGTLELPA--SVTAIEFGAFM-----GCDNLRYVLA 304 (329)
T ss_dssp CTTTTTTCTTCCEEEEECT--TCCEECTTTTT-----TCTTEEEEEE
T ss_pred hHHHhhCChhccEEEEEcc--cceEEchhhhh-----CCccCCEEEe
Confidence 4 456666666 666654 45555533222 2566666655
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.78 E-value=7.5e-11 Score=116.92 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=81.8
Q ss_pred hhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhhcCcCCCC
Q 047584 595 PKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLH 674 (883)
Q Consensus 595 ~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~ 674 (883)
..+.++++|++|+|++|.+..+| .+.++++|++|++++|.++.+|..+..+++|++|++++| .+..+| .+..+++|+
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence 35668889999999999888888 888889999999999999988888888889999999884 667777 588889999
Q ss_pred ceecCCCCCccccCc--cCCCCCCCCcc
Q 047584 675 HLKNSNTDSLEEMPL--GIVRLTCLQTL 700 (883)
Q Consensus 675 ~L~l~~~~~~~~~p~--~i~~L~~L~~L 700 (883)
+|++++|. +..+|. .+..+++|++|
T Consensus 119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 119 VLYMSNNK-ITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp EEEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred EEECCCCc-CCchhHHHHHhcCCCCCEE
Confidence 99998887 565543 45555555555
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.77 E-value=1.6e-08 Score=98.06 Aligned_cols=98 Identities=31% Similarity=0.446 Sum_probs=63.6
Q ss_pred CceeEEeeCCCCCCCcCcc-ccCCCcccEEeccCCCccccccc-cccCCCccEEecCCCCchhhchhh-hcCcCCCCcee
Q 047584 601 QRLRVFSLRGYCIPELPDS-VGDLRYLRYLNLSGTVIRSLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLK 677 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~ 677 (883)
++|++|++++|.+..+|.. ++.+++|++|++++|.++.+|.. +.++++|++|++++| .+..+|.. +..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEE
Confidence 4667777777777666543 46777777777777777766654 467777777777773 45555543 56677777777
Q ss_pred cCCCCCccccCcc-CCCCCCCCcc
Q 047584 678 NSNTDSLEEMPLG-IVRLTCLQTL 700 (883)
Q Consensus 678 l~~~~~~~~~p~~-i~~L~~L~~L 700 (883)
+++|. +..+|.. +..+++|++|
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CcCCc-ceEeCHHHhcCCcccCEE
Confidence 77775 5566654 3455555555
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.71 E-value=2.2e-08 Score=96.18 Aligned_cols=86 Identities=28% Similarity=0.349 Sum_probs=75.1
Q ss_pred CceeEEeeCCCCCCCc-CccccCCCcccEEeccCCCccccccc-cccCCCccEEecCCCCchhhchhh-hcCcCCCCcee
Q 047584 601 QRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTVIRSLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLK 677 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~ 677 (883)
++|++|+|++|.++.+ |..+.++.+|++|+|++|.++.+|+. +.++++|++|+|++ +.+..+|.. +..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEE
Confidence 7799999999999988 56789999999999999999999875 58999999999999 567778764 88999999999
Q ss_pred cCCCCCccccC
Q 047584 678 NSNTDSLEEMP 688 (883)
Q Consensus 678 l~~~~~~~~~p 688 (883)
+++|. +...+
T Consensus 109 L~~N~-~~c~c 118 (170)
T 3g39_A 109 LLNNP-WDCAC 118 (170)
T ss_dssp CCSSC-BCTTB
T ss_pred eCCCC-CCCCc
Confidence 99997 44333
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.70 E-value=1.9e-10 Score=113.94 Aligned_cols=125 Identities=22% Similarity=0.231 Sum_probs=99.4
Q ss_pred cccCCCCceEeeeccccCCCCCCCCCCchhhhcCCCceeEEeeCCCCCCCcCccccCCCcccEEeccCCCcccccccccc
Q 047584 566 DLYDIQHLRTFLPVMLTNSGPCYLAPSILPKLLKLQRLRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPESVNK 645 (883)
Q Consensus 566 ~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~ 645 (883)
.+..+++|+.|.+..+.. .. + +.+.++++|++|++++|.+..+|..+..+++|++|++++|.++.+| .+.+
T Consensus 43 ~~~~l~~L~~L~ls~n~l------~~-l-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI------EK-I-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEEE------SC-C-CCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCCCC------cc-c-cccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 456788899988766542 11 2 2566889999999999999999988888899999999999999987 6899
Q ss_pred CCCccEEecCCCCchhhchh--hhcCcCCCCceecCCCCCccccCcc-----------CCCCCCCCccC
Q 047584 646 LYNLHSLLLEDCDRLKKLCA--DMGNLIKLHHLKNSNTDSLEEMPLG-----------IVRLTCLQTLC 701 (883)
Q Consensus 646 l~~L~~L~l~~c~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~-----------i~~L~~L~~L~ 701 (883)
+++|++|++++ +.+..+|. .+..+++|++|++++|. +...++. +..+++|+.|.
T Consensus 114 l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999999999 46776654 68999999999999997 4433222 55666666663
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.68 E-value=6.2e-08 Score=93.79 Aligned_cols=94 Identities=24% Similarity=0.338 Sum_probs=78.3
Q ss_pred eeEEeeCCCCCCCcCccccCCCcccEEeccCCCccccccc-cccCCCccEEecCCCCchhhchhh-hcCcCCCCceecCC
Q 047584 603 LRVFSLRGYCIPELPDSVGDLRYLRYLNLSGTVIRSLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLKNSN 680 (883)
Q Consensus 603 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~ 680 (883)
.+.++++++.+..+|..+. .+|++|++++|.++.+|.. +.++++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 4788999999999987654 6899999999999998764 689999999999995 66777754 68999999999999
Q ss_pred CCCccccCcc-CCCCCCCCcc
Q 047584 681 TDSLEEMPLG-IVRLTCLQTL 700 (883)
Q Consensus 681 ~~~~~~~p~~-i~~L~~L~~L 700 (883)
|. +..+|.. ++.+++|++|
T Consensus 86 N~-l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 86 NK-LQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp SC-CCCCCTTTTTTCTTCCEE
T ss_pred CC-ccccCHHHhhCCcccCEE
Confidence 98 7777754 5677777766
No 156
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=7.7e-08 Score=103.37 Aligned_cols=186 Identities=14% Similarity=0.096 Sum_probs=115.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC-CeEEEEEeCCCCCHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF-DLKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 266 (883)
.+++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++... ...+ ...+.+..+...... ..+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGIN-VIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHH-TTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchH-HHHHH
Confidence 468999999999999986542 33489999999999999999997421 1111 123334333211111 01111
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhH--HHhcCCCc
Q 047584 267 LSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEV--AKIMSLDQ 344 (883)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v--a~~~~~~~ 344 (883)
+..+.... ....+++.+||+||++......+..+...+.....+.++|+||....- ........
T Consensus 97 ~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 97 VKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 11100000 001256889999999887666677776666655567788888866421 11111224
Q ss_pred cEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHHh
Q 047584 345 AYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLGG 399 (883)
Q Consensus 345 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 399 (883)
.+.+.+++.++...++...+..... .--++....|++.++|.|..+..+..
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 7899999999999999876543211 11246678899999999986654443
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.67 E-value=2.1e-07 Score=97.48 Aligned_cols=172 Identities=12% Similarity=0.027 Sum_probs=104.9
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhc------cCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQD------HFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~~s~~~~~~~ 261 (883)
..+.|||++.++|...|...- ..+....+.|+|++|.|||++|+.|++...... .| ..+++++....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 348899999999988876531 122457889999999999999999998532211 12 356777777788889
Q ss_pred HHHHHHHHhccCCCCC-CChHHHHHHHHHH--hCCCcEEEEEeCCCCCChhhHhhhcccccC-CCCCc--EEEEeCCChh
Q 047584 262 LTRTILSSITKQTVDN-NDLNFLQEELKKQ--LSRKKFLLVLDDVWNENYTDWARLSLPFQA-GAQGS--KIVVTTRNEE 335 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~-~~~~~~~~~l~~~--L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs--~ilvTTR~~~ 335 (883)
++..|++++.+..... ...+.+...+... -.++++++|||++..-. .-+.+...+.. ....+ .||.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 9999999996543222 2233343333332 14568999999996543 11122222110 01222 2333343321
Q ss_pred -----HH----HhcCCCccEeCCCCCHHhHHHHHHhhhc
Q 047584 336 -----VA----KIMSLDQAYELKSLSTEDCLSVLAQHSL 365 (883)
Q Consensus 336 -----va----~~~~~~~~~~l~~L~~~~~~~Lf~~~a~ 365 (883)
+. ..+ ....+.+.+++.++-..++.+++-
T Consensus 175 ~~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 175 TIREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 111 124689999999999999988753
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.61 E-value=3.7e-07 Score=100.04 Aligned_cols=195 Identities=17% Similarity=0.148 Sum_probs=114.0
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
..++|++..++.+..++.... ....+.|+|++|+||||+|+.+.+.......+. ...+..-.....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 459999999999999996542 235788999999999999999987422111110 00000000111111
Q ss_pred HHh-------ccCC-CCCCChHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChh-H-
Q 047584 268 SSI-------TKQT-VDNNDLNFLQEELKKQ-LSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEE-V- 336 (883)
Q Consensus 268 ~~l-------~~~~-~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-v- 336 (883)
..- .... ....+...+...+... ..+++.+||+||+...+...+..+...+.....+..+|++|.... +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 100 0000 0111222222111110 135678999999987766666667666655555667777765432 2
Q ss_pred HHhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHHH
Q 047584 337 AKIMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTLG 398 (883)
Q Consensus 337 a~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 398 (883)
.........+.+.+++.++...++...+-.... .--.+.+..|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~----~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 122233467999999999999999876532111 1114567889999999998776554
No 159
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.55 E-value=5.5e-07 Score=96.20 Aligned_cols=181 Identities=13% Similarity=0.110 Sum_probs=113.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCC-eEEEEEeCCCCCHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 266 (883)
.+++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 56899999999998888543 223489999999999999999987421 11111 1233343322111
Q ss_pred HHHhccCCCCCCChHHHHHHHHHH--h-CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChh-H-HHhcC
Q 047584 267 LSSITKQTVDNNDLNFLQEELKKQ--L-SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEE-V-AKIMS 341 (883)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-v-a~~~~ 341 (883)
.........+... + .+++.++|+|++..........+...+.....+.++|+||.... + .....
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 1111111111111 1 25688999999987766666677766665556777888776543 1 12223
Q ss_pred CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 342 LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 342 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
....+.+.+++.++...++...+..... .--++....|++.++|.+-.+...
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCC----CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3357999999999999998876543211 112456788899999999765443
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=2.2e-07 Score=100.77 Aligned_cols=85 Identities=19% Similarity=0.154 Sum_probs=60.2
Q ss_pred hcCCCceeEEeeCC-CCCCCcC-ccccCCCcccEEeccCCCcccccc-ccccCCCccEEecCCCCchhhchhhhcCcCCC
Q 047584 597 LLKLQRLRVFSLRG-YCIPELP-DSVGDLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLKKLCADMGNLIKL 673 (883)
Q Consensus 597 l~~l~~Lr~L~L~~-~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L 673 (883)
+..+++|++|+|++ |.+..+| ..+++|.+|++|+|++|.|+.+|+ .|.+|++|++|+|++ |.+..+|..+....+|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCCc
Confidence 55777788888875 7777775 457777888888888887777654 567778888888877 4566676654433347
Q ss_pred CceecCCCC
Q 047584 674 HHLKNSNTD 682 (883)
Q Consensus 674 ~~L~l~~~~ 682 (883)
++|++.+|.
T Consensus 106 ~~l~l~~N~ 114 (347)
T 2ifg_A 106 QELVLSGNP 114 (347)
T ss_dssp CEEECCSSC
T ss_pred eEEEeeCCC
Confidence 788777776
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.37 E-value=4.4e-07 Score=98.32 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=53.9
Q ss_pred EeeCCC-CCCCcCccccCCCcccEEeccC-CCccccc-cccccCCCccEEecCCCCchhhchh-hhcCcCCCCceecCCC
Q 047584 606 FSLRGY-CIPELPDSVGDLRYLRYLNLSG-TVIRSLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLKNSNT 681 (883)
Q Consensus 606 L~L~~~-~~~~lp~~i~~l~~L~~L~L~~-~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~ 681 (883)
++++++ .++.+|. ++.+.+|++|+|++ |.++.+| ..|.+|.+|++|+|++| .+..+|. .|.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 355665 5666666 66666666666664 6666665 34666666666666663 4444433 4566666666666666
Q ss_pred CCccccCccCCCCCCCCcc
Q 047584 682 DSLEEMPLGIVRLTCLQTL 700 (883)
Q Consensus 682 ~~~~~~p~~i~~L~~L~~L 700 (883)
. +..+|..+....+|+.|
T Consensus 91 ~-l~~~~~~~~~~~~L~~l 108 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQEL 108 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEE
T ss_pred c-cceeCHHHcccCCceEE
Confidence 5 55665543332224444
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.36 E-value=5.9e-07 Score=87.93 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=38.4
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..++||+.+++++.+++... ..+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999653 2356889999999999999999874
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.35 E-value=9.4e-06 Score=89.20 Aligned_cols=238 Identities=16% Similarity=0.138 Sum_probs=130.8
Q ss_pred ceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCccccc-cccccCCCccEEecCCCCchhhchhhhcCcCCCCceecC
Q 047584 602 RLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLKNS 679 (883)
Q Consensus 602 ~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~ 679 (883)
+|+.+.|..+ +..++. .+.+ .+|+.+.+.. .++.++ ..|.+|.+|+.+++.+ +.+..+|...-...+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeC
Confidence 5677776654 555543 3444 3577777765 566664 4566777777777776 4566666554345677777776
Q ss_pred CCCCccccCc-cCCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCCCCccchHhhhcCCCCCCCceEEEe
Q 047584 680 NTDSLEEMPL-GIVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENVKCVGDAMEAQMDGKKNLKELSLNW 758 (883)
Q Consensus 680 ~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 758 (883)
.+ +..++. .|..+++|+.+..-. ......-..+.+ .+|+ .+.+.+ ++ .......|.++++|+.+.+..
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~-~i~lp~--~i---~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGIT-TVKLPN--GV---TNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCS-EEEEET--TC---CEECTTTTTTCTTCCEEEEES
T ss_pred Cc--hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCcc-EEEeCC--Cc---cEEChhHhhCCCCCCEEEeCC
Confidence 43 444443 255566666552110 000000111112 2344 444421 11 111234577888999999876
Q ss_pred ccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC--CCCCcCcccc
Q 047584 759 TCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP--SVGQLPSLKH 836 (883)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~ 836 (883)
+...... .....-..+..+++|+.+.+.+ ....++..... .+.+|+.|+|..+ +..++ .+..+ +|+.
T Consensus 281 ~~~~~~~------~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~-~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 281 STFNDDP------EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLG-GNRKVTQLTIPAN--VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp SCCCCCT------TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT-TCCSCCEEEECTT--CCEECTTSSSSS-CCCE
T ss_pred ccccCCc------ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhc-CCCCccEEEECcc--ccEEcHHhCCCC-CCCE
Confidence 3211000 0001223566788899888874 35555544332 3788999999664 44444 67778 9999
Q ss_pred eeccCcccceecCCCccCCCCCCCCC-Ccceeeccc
Q 047584 837 LVVCGMSSVRRLDPEFYGKDASIPFP-YLETLRFED 871 (883)
Q Consensus 837 L~L~~~~~l~~i~~~~~~~~~~~~~p-~L~~L~l~~ 871 (883)
|++.++ .+..++...+. ++| ++..|.+-.
T Consensus 350 l~l~~n-~~~~l~~~~F~-----~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 350 VKVEGT-TPPQVFEKVWY-----GFPDDITVIRVPA 379 (401)
T ss_dssp EEECCS-SCCBCCCSSCC-----CSCTTCCEEEECG
T ss_pred EEEcCC-CCccccccccc-----CCCCCccEEEeCH
Confidence 999877 44444433222 254 677776653
No 164
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.33 E-value=7.2e-07 Score=90.94 Aligned_cols=173 Identities=14% Similarity=0.103 Sum_probs=98.9
Q ss_pred cceecch---hhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRE---TEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
..++|++ ..++.+..++... ..+.+.|+|++|+||||||+.+++. .......+.|++++...+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 4566633 4455566655432 2467899999999999999999974 3333345667766432110
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhh--HhhhcccccCC-CCC-cEEEEeCCChh-----
Q 047584 265 TILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTD--WARLSLPFQAG-AQG-SKIVVTTRNEE----- 335 (883)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~ilvTTR~~~----- 335 (883)
+. . .+ +.+ .++.+||+||++...... ...+...+... ..+ .++|+||+...
T Consensus 95 -----~~----------~---~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----ST----------A---LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----CG----------G---GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----HH----------H---HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 0 00 001 346789999997643322 22232222111 112 24777766321
Q ss_pred ----HHHhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 336 ----VAKIMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 336 ----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
+...+.....+.+.+++.++..+++...+..... . --++....|++.++|.+-.+..+
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-Q---LPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-C---CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHccCCHHHHHHH
Confidence 1111122267899999999999999887642111 1 11466788999999988766544
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.32 E-value=1.4e-05 Score=86.03 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=104.8
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
..++|++..++.+..++..... .......|.|+|++|+|||+||+.+++. ....| +.++.+......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~~~------- 95 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEKSG------- 95 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCSHH-------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccchh-------
Confidence 5799999999999888864210 0112456899999999999999999763 22222 233332211111
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCC------------------CCcEEEE
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGA------------------QGSKIVV 329 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ilv 329 (883)
.....+.. ..+..+|+||++..........+...+.... ++..+|.
T Consensus 96 --------------~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 96 --------------DLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp --------------HHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred --------------HHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 11111111 2456788899997765544444443332211 1245665
Q ss_pred eCCChh-HHH-hc-CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 330 TTRNEE-VAK-IM-SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 330 TTR~~~-va~-~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
+|.... +.. .. .....+.+.+++.++...++...+.... ..--.+....|++.+.|.|-.+..+
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN----KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 555422 111 11 2235799999999999999987764221 1122566788899999999555433
No 166
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=3.8e-06 Score=91.13 Aligned_cols=195 Identities=13% Similarity=0.106 Sum_probs=113.5
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCC-eEEEEEeCCCCCHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 266 (883)
..++|++..++.+..++.... ...+.|+|++|+||||+|+.+.+.......+. ..+.++.+....... +.+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 568999999999999986542 23389999999999999999987432111121 233344443223222 2222
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChh-HHH-hcCCCc
Q 047584 267 LSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEE-VAK-IMSLDQ 344 (883)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-va~-~~~~~~ 344 (883)
+..+........... .....-.+++-+|++|++..........+...+.......++|++|.... +.. ......
T Consensus 110 ~~~~~~~~~~~~~~~----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHHHSCCCCCCTT----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHHHhhhcccccchh----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 222211111000000 00111124567999999977665555566555555445567777665432 111 111124
Q ss_pred cEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 345 AYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 345 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
.+.+.+++.++....+...+..... .. -++....|++.++|.|-.+..+
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~-~i---~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENV-KC---DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHTSSCHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 7899999999999998876543211 11 1567888999999999865443
No 167
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=9.4e-07 Score=94.87 Aligned_cols=102 Identities=16% Similarity=0.047 Sum_probs=72.7
Q ss_pred CCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCee-EEEEecCCCCCCC
Q 047584 747 GKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLV-TLKFENCGICTAL 825 (883)
Q Consensus 747 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~-~L~L~~~~~~~~l 825 (883)
.+++|+.|+|..|... ...-..+..+++|+.|.+.++ ...++..... .+++|+ .|+|.+ .++.+
T Consensus 224 ~~~~L~~l~L~~n~i~-----------~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~-~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 224 YMPNLVSLDISKTNAT-----------TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS-NCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp HCTTCCEEECTTBCCC-----------EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCTTCCEEEEECT--TCCEE
T ss_pred hcCCCeEEECCCCCcc-----------eecHhhhhCCCCCCEEECCcc-cceehHHHhh-CChhccEEEEEcc--cceEE
Confidence 3688999998653111 011235677889999999886 6666655442 488999 999988 44555
Q ss_pred C--CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeec
Q 047584 826 P--SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRF 869 (883)
Q Consensus 826 ~--~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l 869 (883)
+ .+..+++|+.|+++++ .+..|+...+. .+++|+.|..
T Consensus 289 ~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~-----~~~~L~~ly~ 328 (329)
T 3sb4_A 289 EFGAFMGCDNLRYVLATGD-KITTLGDELFG-----NGVPSKLIYK 328 (329)
T ss_dssp CTTTTTTCTTEEEEEECSS-CCCEECTTTTC-----TTCCCCEEEC
T ss_pred chhhhhCCccCCEEEeCCC-ccCccchhhhc-----CCcchhhhcc
Confidence 4 7889999999999766 78888765433 3788888753
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.17 E-value=1e-05 Score=90.02 Aligned_cols=160 Identities=19% Similarity=0.179 Sum_probs=96.4
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCC--eEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD--LKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 292 (883)
...+.|+|++|+||||||+.+++. ....|. ..++++. ..+..++...+... .. ..+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 467899999999999999999983 434432 3445543 23344444444321 11 12344444
Q ss_pred CCcEEEEEeCCCCCCh--hhHhhhcccccC-CCCCcEEEEeCCCh---------hHHHhcCCCccEeCCCCCHHhHHHHH
Q 047584 293 RKKFLLVLDDVWNENY--TDWARLSLPFQA-GAQGSKIVVTTRNE---------EVAKIMSLDQAYELKSLSTEDCLSVL 360 (883)
Q Consensus 293 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTTR~~---------~va~~~~~~~~~~l~~L~~~~~~~Lf 360 (883)
.+.-+|++||++.... ..-..+...+.. ...|..||+||... .+...+.....+.+++++.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 4677999999965432 122233333221 13467788888762 22232333467899999999999999
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHH
Q 047584 361 AQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAK 395 (883)
Q Consensus 361 ~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 395 (883)
.+.+....- ..+ +++...|++.++|.+-.+.
T Consensus 273 ~~~~~~~~~-~i~---~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 273 RKMLEIEHG-ELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHTC-CCC---TTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHH
Confidence 887642111 112 2446778889999886443
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.16 E-value=2.3e-05 Score=86.94 Aligned_cols=176 Identities=24% Similarity=0.245 Sum_probs=102.1
Q ss_pred cceecchhhH---HHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC-CCHHHHH
Q 047584 188 AKVYGRETEK---KEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED-FDVKGLT 263 (883)
Q Consensus 188 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~ 263 (883)
..++|.+..+ ..|...+... ....+.|+|++|+||||||+.+++. ....| +.++.. ..... .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-H
Confidence 5688988887 6777777554 2467999999999999999999973 32222 222221 12222 1
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEE-EeCCChh--H-HHh
Q 047584 264 RTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIV-VTTRNEE--V-AKI 339 (883)
Q Consensus 264 ~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTTR~~~--v-a~~ 339 (883)
+.++... ......+++.+|++|++........+.+...+... ...+| .||.+.. + ...
T Consensus 92 r~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 2221111 11112467899999999876555555555444432 22333 3555532 1 222
Q ss_pred cCCCccEeCCCCCHHhHHHHHHhhhcCCCCC---CCCccHHHHHHHHHHhcCCChHHHH
Q 047584 340 MSLDQAYELKSLSTEDCLSVLAQHSLETTDF---SSHKSLEEIGKEIVIKCNGLPLAAK 395 (883)
Q Consensus 340 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~---~~~~~l~~~~~~I~~~c~GlPLai~ 395 (883)
......+.+.+++.++...++.+..-..... ....--++....|++.++|.+-.+.
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 2334578899999999999998775431100 1111225667888888999886544
No 170
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=5.9e-06 Score=89.64 Aligned_cols=195 Identities=13% Similarity=0.080 Sum_probs=106.2
Q ss_pred cceecchhhHHHHHHHH-cCCCCCCCCCceEEEEEecCCchHHHHHHHHhcch-hh-hc--cCCe---------------
Q 047584 188 AKVYGRETEKKEIVELL-LKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDK-RV-QD--HFDL--------------- 247 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~-~~--~F~~--------------- 247 (883)
.+++|.+..++.+.+++ .... ... +.|+|+.|+||||+|+.++... .. .+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 56899999888888877 3321 123 8999999999999999987621 00 00 0000
Q ss_pred -----EEEEEeCCCC-CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCC
Q 047584 248 -----KAWTCVSEDF-DVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAG 321 (883)
Q Consensus 248 -----~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 321 (883)
.+.+..+... ......++++..+..... ..... .+. -+.+++-++|+|++...+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111100 000012222222211000 00000 000 02346779999999887666666666655544
Q ss_pred CCCcEEEEeCCCh-hH-HHhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccH-HHHHHHHHHhcCCChHHHHHHH
Q 047584 322 AQGSKIVVTTRNE-EV-AKIMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSL-EEIGKEIVIKCNGLPLAAKTLG 398 (883)
Q Consensus 322 ~~gs~ilvTTR~~-~v-a~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l-~~~~~~I~~~c~GlPLai~~~~ 398 (883)
..+..+|++|... .+ .........+++.+++.++....+...+....- .-- ++.+..|++.++|.+-.+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI----QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC----CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567777777652 22 222233367999999999999999876532111 011 2457788999999987654443
No 171
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.16 E-value=1.8e-05 Score=86.89 Aligned_cols=218 Identities=13% Similarity=0.054 Sum_probs=140.3
Q ss_pred CceeEEeeCCCCCCCcC-ccccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchh-hhcCcCCCCceec
Q 047584 601 QRLRVFSLRGYCIPELP-DSVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLKN 678 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l 678 (883)
..|+.+.+.. .+..++ ..+.+|.+|+.+++++|.++.+|.....+.+|+.+.+.. .+..++. .+.++++|+.+.+
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEEC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEec
Confidence 3688899886 667764 567899999999999999999988766689999999975 3666654 5889999999999
Q ss_pred CCCCCccccCcc-CCCCCCCCccCceEeCcCCCCCcccccccccCCCeeEEeccCCC-CCccchHhhhcCCCCCCCceEE
Q 047584 679 SNTDSLEEMPLG-IVRLTCLQTLCNFVVAKDSGSGLRELKSLTHLERTLKISKLENV-KCVGDAMEAQMDGKKNLKELSL 756 (883)
Q Consensus 679 ~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~-~~~~~~~~~~l~~~~~L~~L~l 756 (883)
..+ +..++.. |.. ++|+.+.. .+......-..+.++++|+ .+.+.+-... ..........|.++++|+.+.+
T Consensus 234 ~~~--l~~I~~~aF~~-~~L~~i~l--p~~i~~I~~~aF~~c~~L~-~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 234 PEN--VSTIGQEAFRE-SGITTVKL--PNGVTNIASRAFYYCPELA-EVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp CTT--CCEECTTTTTT-CCCSEEEE--ETTCCEECTTTTTTCTTCC-EEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred CCC--ccCcccccccc-CCccEEEe--CCCccEEChhHhhCCCCCC-EEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 875 5666544 444 66666632 1111111223445666666 6665431110 0011123346788999999988
Q ss_pred EeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC-CCCCcC-cc
Q 047584 757 NWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP-SVGQLP-SL 834 (883)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp-~L 834 (883)
.. .. ....-..+..+++|+.+.|..+ ...++..... .+ +|+.|++.+|......+ .+..+| ++
T Consensus 308 ~~--~i----------~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~-~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 308 PE--SI----------RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN-NT-GIKEVKVEGTTPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp CT--TC----------CEECTTTTTTCCSCCEEEECTT-CCEECTTSSS-SS-CCCEEEECCSSCCBCCCSSCCCSCTTC
T ss_pred CC--ce----------EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC-CC-CCCEEEEcCCCCcccccccccCCCCCc
Confidence 53 11 0011245677889999999654 4555443332 26 99999999985432222 455564 67
Q ss_pred cceeccCc
Q 047584 835 KHLVVCGM 842 (883)
Q Consensus 835 ~~L~L~~~ 842 (883)
..|++-.+
T Consensus 373 ~~l~vp~~ 380 (401)
T 4fdw_A 373 TVIRVPAE 380 (401)
T ss_dssp CEEEECGG
T ss_pred cEEEeCHH
Confidence 77777644
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.16 E-value=3.8e-05 Score=83.66 Aligned_cols=197 Identities=12% Similarity=0.077 Sum_probs=107.3
Q ss_pred cceecchhhHHH---HHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeC----CCCCHH
Q 047584 188 AKVYGRETEKKE---IVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVS----EDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s----~~~~~~ 260 (883)
..++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+.+. ...... .+.+... ......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchh
Confidence 579999988766 455554432 12368999999999999999999974 222111 1222221 223333
Q ss_pred HHHHHHHHHhccCC------------------------------CCCCChHHHHHHHHHHh-----CCC----cEEEEEe
Q 047584 261 GLTRTILSSITKQT------------------------------VDNNDLNFLQEELKKQL-----SRK----KFLLVLD 301 (883)
Q Consensus 261 ~~~~~il~~l~~~~------------------------------~~~~~~~~~~~~l~~~L-----~~k----r~LlVlD 301 (883)
+.+.+......... ........+...+.+.. .++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 44444433311100 00001222222222221 133 3599999
Q ss_pred CCCCCChhhHhhhcccccCCCCCcEEEEeCC-C------------hhH-HHhcCCCccEeCCCCCHHhHHHHHHhhhcCC
Q 047584 302 DVWNENYTDWARLSLPFQAGAQGSKIVVTTR-N------------EEV-AKIMSLDQAYELKSLSTEDCLSVLAQHSLET 367 (883)
Q Consensus 302 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR-~------------~~v-a~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~ 367 (883)
++..........+...+...... .++++|. . ..+ .........+.+.+++.++...++...+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99877666666665555443333 3443332 1 011 1111222458999999999999998776432
Q ss_pred CCCCCCccHHHHHHHHHHhcC-CChHHHHH
Q 047584 368 TDFSSHKSLEEIGKEIVIKCN-GLPLAAKT 396 (883)
Q Consensus 368 ~~~~~~~~l~~~~~~I~~~c~-GlPLai~~ 396 (883)
.. .--.+....|++.+. |.|-.+..
T Consensus 276 ~~----~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 276 DV----EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp TC----CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred CC----CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 11 112456788888887 77765543
No 173
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.13 E-value=3.8e-05 Score=82.18 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=103.8
Q ss_pred hhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhh--------------------ccCCeEEEEEe
Q 047584 194 ETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ--------------------DHFDLKAWTCV 253 (883)
Q Consensus 194 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~~ 253 (883)
+...+.+...+..+. -...+.++|++|+|||++|+.+.+...-. .++| ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 445667777775442 24678999999999999999998632110 1122 222222
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEE
Q 047584 254 SEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQL-----SRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIV 328 (883)
Q Consensus 254 s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 328 (883)
.. .......+++.. +.+.+ .+++-++|+|++........+.+...+.....+..+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 000112222222 22222 2567899999998776666666666666555567777
Q ss_pred EeCCChh-H-HHhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHHHH
Q 047584 329 VTTRNEE-V-AKIMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAKTL 397 (883)
Q Consensus 329 vTTR~~~-v-a~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 397 (883)
++|.... + .........+.+.+++.++....+.... . .. ++.+..+++.++|.|..+..+
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--~----~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV--T----MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC--C----CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc--C----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 6665532 2 2223344679999999999999988764 1 11 355678999999999766544
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=1.3e-05 Score=91.23 Aligned_cols=195 Identities=13% Similarity=0.139 Sum_probs=107.2
Q ss_pred cceecchhhHHHHHHHHcCCC-----------CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC
Q 047584 188 AKVYGRETEKKEIVELLLKDD-----------SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED 256 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 256 (883)
.+++|++..+++|.+++.... ..+.+..+.+.|+|++|+||||+|+.+++.. .+ ..+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 579999999999999996510 0011234789999999999999999999742 12 2344555444
Q ss_pred CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH--hCCCcEEEEEeCCCCCChh---hHhhhcccccCCCCCcEEEEeC
Q 047584 257 FDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQ--LSRKKFLLVLDDVWNENYT---DWARLSLPFQAGAQGSKIVVTT 331 (883)
Q Consensus 257 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVlDdv~~~~~~---~~~~l~~~l~~~~~gs~ilvTT 331 (883)
.... +....+....... ..........+. ..+++.+||+|++...... .+..+...+... +..||+++
T Consensus 114 ~~~~-~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~ 186 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILIC 186 (516)
T ss_dssp CCHH-HHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEE
T ss_pred chHH-HHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEE
Confidence 3332 2232222221110 000000000001 1357889999999654321 123333333222 23355444
Q ss_pred CCh---hHHHhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCC-ChHHHHHHH
Q 047584 332 RNE---EVAKIMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNG-LPLAAKTLG 398 (883)
Q Consensus 332 R~~---~va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~ 398 (883)
... .+.........+.+.+++.++..+.+...+...... .. ++....|++.++| ++-++..+.
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-LD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-CC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 332 222222334578999999999999887765432111 11 2346788899999 445555543
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.06 E-value=2.4e-05 Score=81.93 Aligned_cols=184 Identities=17% Similarity=0.177 Sum_probs=99.2
Q ss_pred cceecchhhHHHHHHHHcCCCCC-------CCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSR-------NDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
..++|.+..+++|.+.+...-.. +....+-+.|+|++|+|||+||+.+++. .... .+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~-- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVK-- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHH--
Confidence 67999999999998877431000 0112456899999999999999999873 2222 22233221110
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC-----------Chh---hHhhhccccc--CCCCC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNE-----------NYT---DWARLSLPFQ--AGAQG 324 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~--~~~~g 324 (883)
. ........+...+......++.+|+|||+... +.. ....+...+. ....+
T Consensus 90 ------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 90 ------------K-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp ------------C-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred ------------h-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 0 00001111222233333456789999999432 111 1111111111 12245
Q ss_pred cEEEEeCCChhHHH--hcC---CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCC-ChHHHHH
Q 047584 325 SKIVVTTRNEEVAK--IMS---LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNG-LPLAAKT 396 (883)
Q Consensus 325 s~ilvTTR~~~va~--~~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~ 396 (883)
..||.||....... ... ....+.++..+.++..++|......... ..... ...|++.+.| .|-.+..
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 67777886542211 111 1246889999999999999887643221 11112 4567777777 4544443
No 176
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.04 E-value=5e-05 Score=78.29 Aligned_cols=187 Identities=15% Similarity=0.135 Sum_probs=98.7
Q ss_pred cceecchhhHHHHHHHHc---CCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLL---KDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
.+++|.+..++.|.+++. .... .+....+-+.|+|++|+|||++|+.+++. .... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 568899988877765542 2210 01123456889999999999999999873 3222 234444332110
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC------------h---hhHhhhcccccC--CCCC
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN------------Y---TDWARLSLPFQA--GAQG 324 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------~---~~~~~l~~~l~~--~~~g 324 (883)
........+...+.......+.+|+||++.... . .....+...+.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 000111122223333334567899999996531 0 111222222221 1234
Q ss_pred cEEEEeCCChhH-HHh-cC---CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChH-HHHHH
Q 047584 325 SKIVVTTRNEEV-AKI-MS---LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPL-AAKTL 397 (883)
Q Consensus 325 s~ilvTTR~~~v-a~~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 397 (883)
..||.||..... ... .. ....+.++..+.++..+++...+.... ...........+++.+.|.+- .|..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~---~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK---LTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT---CCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC---CCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 566666655432 111 11 235678999999999999887654321 111222335788888888754 44433
No 177
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.03 E-value=3.6e-07 Score=99.51 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=41.5
Q ss_pred CCceeEEeeCCCCCCCc-----Ccccc-CCCcccEEeccCCCcccc--ccccccCCCccEEecCCCCchhh----chhhh
Q 047584 600 LQRLRVFSLRGYCIPEL-----PDSVG-DLRYLRYLNLSGTVIRSL--PESVNKLYNLHSLLLEDCDRLKK----LCADM 667 (883)
Q Consensus 600 l~~Lr~L~L~~~~~~~l-----p~~i~-~l~~L~~L~L~~~~i~~l--p~~i~~l~~L~~L~l~~c~~l~~----lp~~i 667 (883)
+++|++|+|++|.++.. ...+. ...+|++|+|++|.+... ......+.+|++|+|++|..... +...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 34566777777666532 11222 225667777776666521 12222345666677766432211 11112
Q ss_pred -cCcCCCCceecCCCC
Q 047584 668 -GNLIKLHHLKNSNTD 682 (883)
Q Consensus 668 -~~L~~L~~L~l~~~~ 682 (883)
...++|++|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP 166 (372)
T ss_dssp HSTTCCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCC
Confidence 234566666666665
No 178
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.00 E-value=4e-05 Score=81.17 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=90.2
Q ss_pred ceecchhhHHHHHHHHcCCC---------CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCH
Q 047584 189 KVYGRETEKKEIVELLLKDD---------SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDV 259 (883)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 259 (883)
.++|.+..++.|.+++.... -........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888888876653210 001123457899999999999999988874322222211223333211
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC---------ChhhHhhhcccccCCCCCcEEEEe
Q 047584 260 KGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNE---------NYTDWARLSLPFQAGAQGSKIVVT 330 (883)
Q Consensus 260 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvT 330 (883)
.+... ........+...+... +.-+|++|++... .......+...+.....+..||+|
T Consensus 109 ---------~l~~~-~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQ-YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCS-STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhh-cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 11110 0111112222223222 3459999999733 334445555555555556778888
Q ss_pred CCChhHHHhc--C------CCccEeCCCCCHHhHHHHHHhhhc
Q 047584 331 TRNEEVAKIM--S------LDQAYELKSLSTEDCLSVLAQHSL 365 (883)
Q Consensus 331 TR~~~va~~~--~------~~~~~~l~~L~~~~~~~Lf~~~a~ 365 (883)
|......... . ....+.+++++.++...++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 8654321110 1 125788999999999999877654
No 179
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.99 E-value=3.3e-05 Score=82.51 Aligned_cols=174 Identities=14% Similarity=0.122 Sum_probs=102.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|.+..++.+.+++.... ...++.+.|++|+|||++|+.+++. .. ...+.++.+.. .. ...+..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~-~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KI-DFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CH-HHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CH-HHHHHHH
Confidence 578999999999999997542 2367888899999999999999873 22 12344554332 22 2222222
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-hhhHhhhcccccCCCCCcEEEEeCCChh-----HHHhcC
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN-YTDWARLSLPFQAGAQGSKIVVTTRNEE-----VAKIMS 341 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTTR~~~-----va~~~~ 341 (883)
....... ...+++-+||+||+.... ......+...+.....+.++|+||.... +...
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR-- 156 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR-- 156 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH--
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh--
Confidence 2211000 012468899999997764 4444555544443334567888776533 2222
Q ss_pred CCccEeCCCCCHHhHHHHH-------HhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 342 LDQAYELKSLSTEDCLSVL-------AQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 342 ~~~~~~l~~L~~~~~~~Lf-------~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
...+.+++++.++-.+++ ...+.... ...++ .+....|++.++|.+-.+
T Consensus 157 -~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~-~~~~~--~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 157 -CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEG-IAIAD--MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp -SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT-CCBSC--HHHHHHHHHHTCSCTTHH
T ss_pred -CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCCCc--HHHHHHHHHhCCCCHHHH
Confidence 247899999988743332 22221111 11111 266778888898876543
No 180
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.95 E-value=0.00015 Score=75.02 Aligned_cols=171 Identities=12% Similarity=0.143 Sum_probs=90.4
Q ss_pred cceecchhhHHHHHH-------HHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVE-------LLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
..++|.....++++. .+... .....+.+.|+|++|+|||+||+.+++. ... . .+.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~--~-~~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNF--P-FIKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTC--S-EEEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCC--C-EEEEeCHHH----
Confidence 346677666665555 33221 1234678999999999999999999973 222 2 122222211
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC----------ChhhHhhhccccc---CCCCCcEE
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNE----------NYTDWARLSLPFQ---AGAQGSKI 327 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~----------~~~~~~~l~~~l~---~~~~gs~i 327 (883)
+.+. ........+...+......+..+|+|||+... .......+...+. .......|
T Consensus 101 ---------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000 00000112223344444567899999998431 1111122222222 12233456
Q ss_pred EEeCCChhHHHh---cCC-CccEeCCCCCH-HhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCC
Q 047584 328 VVTTRNEEVAKI---MSL-DQAYELKSLST-EDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNG 389 (883)
Q Consensus 328 lvTTR~~~va~~---~~~-~~~~~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G 389 (883)
|.||........ .+. ...+.+++++. ++...++.+.. . .. .+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~--~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N--FK---DKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C--SC---HHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C--CC---HHHHHHHHHHhcC
Confidence 777776544332 121 35688999988 66666665531 0 11 4557778888887
No 181
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.91 E-value=1e-05 Score=78.48 Aligned_cols=45 Identities=24% Similarity=0.359 Sum_probs=38.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999653 2356789999999999999999874
No 182
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.87 E-value=2.8e-05 Score=75.10 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=65.1
Q ss_pred chhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhcc
Q 047584 193 RETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITK 272 (883)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 272 (883)
.+...+.+.+++..-.. .....+.|+|++|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 44455555555543211 124689999999999999999999843212222 233333 44555554444332
Q ss_pred CCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHh--hhcccccCC-CCCcEEEEeCCC
Q 047584 273 QTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWA--RLSLPFQAG-AQGSKIVVTTRN 333 (883)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTTR~ 333 (883)
.... .....+ . +.-+|||||++....+.|. .+...+... ..|..+|+||..
T Consensus 89 ~~~~-----~~~~~~----~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFLKTV----L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHHHHH----H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHHHHh----c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2111 222222 1 4668999999743333333 222222211 246778888865
No 183
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.87 E-value=0.00019 Score=76.38 Aligned_cols=187 Identities=14% Similarity=0.080 Sum_probs=102.5
Q ss_pred cceecchhhHHHHHHHHcCC---C---CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLKD---D---SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
..++|.+..++.|.+++... . .......+-+.|+|++|+|||+||+++++. ....| +.++. .+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~------~~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSS------SD 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEH------HH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEch------HH
Confidence 67999999999998877210 0 001123467899999999999999999873 33222 22322 11
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh-----------hhHhhhcccc---cCCCCCcEE
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY-----------TDWARLSLPF---QAGAQGSKI 327 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l---~~~~~gs~i 327 (883)
+. .... ......+...+...-..++.+|+||++..... .....+...+ .....+..|
T Consensus 87 l~----~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 87 LV----SKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp HH----TTTG-----GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred Hh----hccc-----chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 11 1100 00111122222223345678999999964211 0012222222 223345566
Q ss_pred EEeCCChhH-HHh--cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCC-ChHHHHHHH
Q 047584 328 VVTTRNEEV-AKI--MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNG-LPLAAKTLG 398 (883)
Q Consensus 328 lvTTR~~~v-a~~--~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~ 398 (883)
|.||..... ... ..-...+.+...+.++-.++|...+..... . --......|++.+.| .+-.|..+.
T Consensus 158 i~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~---~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC-V---LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC-C---CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC-C---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 667765321 111 122356788889999999999887643211 1 113456788899987 454555444
No 184
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=8.6e-06 Score=87.84 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=27.7
Q ss_pred ccCCCcccEEeccCCCccccccccccCCCccEEecCCCCchhhchhhh--cCcCCCCceecC
Q 047584 620 VGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLEDCDRLKKLCADM--GNLIKLHHLKNS 679 (883)
Q Consensus 620 i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~i--~~L~~L~~L~l~ 679 (883)
+..+++|+.|+|++|.-..+|. + .+++|++|++..|.........+ ..+++|++|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3445566666665552123333 2 25666666666543222211222 256666666654
No 185
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.84 E-value=0.00039 Score=74.88 Aligned_cols=187 Identities=16% Similarity=0.095 Sum_probs=100.2
Q ss_pred cceecchhhHHHHHHHHcCC----C--CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLKD----D--SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
.+++|.+..++.|.+.+... . .......+-|.|+|++|+|||+||+++++. ....| +.++.+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 57899999999998877311 0 001112355889999999999999999983 32222 223221 1
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChh-----------hHhhhccccc---CCCCCcEE
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYT-----------DWARLSLPFQ---AGAQGSKI 327 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~i 327 (883)
+. ... .......+...+...-..++.+|+||++...... ....+...+. ....+..|
T Consensus 120 l~----~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 LV----SKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred Hh----hhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 11 111 1111122222233333457899999999643211 0112222221 12234556
Q ss_pred EEeCCChh-HH--HhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCC-ChHHHHHHH
Q 047584 328 VVTTRNEE-VA--KIMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNG-LPLAAKTLG 398 (883)
Q Consensus 328 lvTTR~~~-va--~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~ 398 (883)
|.||.... +. -.......+.+...+.++-..++......... .. -......|++.+.| .+-.|..+.
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS-VL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB-CC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66665432 11 11133456788999999999998876543211 01 13456788899988 454454443
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.83 E-value=0.00022 Score=76.07 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=86.7
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRK 294 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~k 294 (883)
...+.|+|++|+||||||+.+++.. ...-...+++++ ..+...+...+... .... +.+.+ .+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~--~~~~~~~~~i~~------~~~~~~~~~~~~~~-----~~~~----~~~~~-~~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSA------DDFAQAMVEHLKKG-----TINE----FRNMY-KS 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEEH------HHHHHHHHHHHHHT-----CHHH----HHHHH-HT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHh-cC
Confidence 4568999999999999999999842 221123455543 33344444433211 1111 22222 23
Q ss_pred cEEEEEeCCCCCCh--hhHhhhcccccC-CCCCcEEEEeCCCh---------hHHHhcCCCccEeCCCCCHHhHHHHHHh
Q 047584 295 KFLLVLDDVWNENY--TDWARLSLPFQA-GAQGSKIVVTTRNE---------EVAKIMSLDQAYELKSLSTEDCLSVLAQ 362 (883)
Q Consensus 295 r~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTTR~~---------~va~~~~~~~~~~l~~L~~~~~~~Lf~~ 362 (883)
.-+|++||+..... .....+...+.. ...|..||+||... .+...+.....+.+++ +.++...++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 67999999965432 122223222221 12356788777542 1222223335689999 99999999988
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHhcCCChH
Q 047584 363 HSLETTDFSSHKSLEEIGKEIVIKCNGLPL 392 (883)
Q Consensus 363 ~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 392 (883)
.+..... ..+ +++...|++.+ |.+-
T Consensus 178 ~~~~~~~-~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFNL-ELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTTC-CCC---HHHHHHHHHHC-SSHH
T ss_pred HHHhcCC-CCC---HHHHHHHHHhC-CCHH
Confidence 7642211 111 45677788888 7654
No 187
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.83 E-value=1.9e-05 Score=73.10 Aligned_cols=114 Identities=12% Similarity=-0.013 Sum_probs=68.3
Q ss_pred ceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHH
Q 047584 189 KVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILS 268 (883)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~ 268 (883)
.++|++..+.++.+.+..... ...-|.|+|.+|+|||++|+.+++.... .... .+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 578999999999888754211 1134789999999999999999874211 1112 23 655543221
Q ss_pred HhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC
Q 047584 269 SITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN 333 (883)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 333 (883)
.. ....+... +.-.|+||++..........+...+.......++|.||..
T Consensus 66 ---------~~---~~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQ---LNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SC---HHHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hh---hhcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 01 11112111 2346899999877665555665555444455677777764
No 188
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=0.00018 Score=77.31 Aligned_cols=181 Identities=13% Similarity=0.169 Sum_probs=103.5
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCC-eEEEEEeCCCCCHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVSEDFDVKGLTRTI 266 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 266 (883)
..++|.+..++.|...+.... ...+.++|++|+||||+|+.+++... ...+. ...-++.+.......+ +++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-HHH
Confidence 467899988898888886542 23389999999999999999987421 11111 1222222222122111 111
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChh-H-HHhcCCCc
Q 047584 267 LSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEE-V-AKIMSLDQ 344 (883)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-v-a~~~~~~~ 344 (883)
+..+.... ..+.+.+-++|+|++..........+...+.......++|++|.... + ........
T Consensus 97 i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 97 IKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 11111000 00123477899999976655555555555544445566766665422 1 11122234
Q ss_pred cEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHH
Q 047584 345 AYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAA 394 (883)
Q Consensus 345 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 394 (883)
.+.+.+++.++....+...+-... ... -++..+.|++.++|.+--+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~-~~i---~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEK-LKL---SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTT-CCB---CHHHHHHHHHHHTTCHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHH
Confidence 788999999998888876552211 111 1456778889999987643
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.80 E-value=0.00098 Score=70.65 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=101.4
Q ss_pred cceecchhhHHHHHHHHcC----CCC--CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLK----DDS--RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
.+++|.+..++.|.+.+.. ++. ......+.|.|+|++|+|||+||+++++... ... .+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHHh---
Confidence 5789999999888877631 000 0112346789999999999999999997320 111 22333332110
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-------hhhH----hhhccccc---CCCCCcEE
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN-------YTDW----ARLSLPFQ---AGAQGSKI 327 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-------~~~~----~~l~~~l~---~~~~gs~i 327 (883)
.........+...+...-..++.+|+||++.... .... ..+...+. ....+..|
T Consensus 85 ------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 ------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 0111122222222333334678899999995420 0011 11111111 12234455
Q ss_pred EEeCCChh-HHH--hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCC-hHHHHHHH
Q 047584 328 VVTTRNEE-VAK--IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGL-PLAAKTLG 398 (883)
Q Consensus 328 lvTTR~~~-va~--~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~~ 398 (883)
|.||.... +.. .......+.+...+.++-..++......... .--......|++.+.|. +-.|..+.
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN----SLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB----CCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55664422 111 1123356788888999988888876532211 11135577899999987 44455444
No 190
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=4.3e-06 Score=79.09 Aligned_cols=37 Identities=19% Similarity=0.468 Sum_probs=16.9
Q ss_pred CeeEEEEecCCCCCC--CCCCCCcCcccceeccCcccce
Q 047584 810 NLVTLKFENCGICTA--LPSVGQLPSLKHLVVCGMSSVR 846 (883)
Q Consensus 810 ~L~~L~L~~~~~~~~--l~~l~~lp~L~~L~L~~~~~l~ 846 (883)
+|++|+|++|..+++ +..+..+|+|++|+|++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 345555555544333 2233444555555555544443
No 191
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.74 E-value=1.3e-05 Score=86.32 Aligned_cols=17 Identities=6% Similarity=-0.011 Sum_probs=10.4
Q ss_pred ccccCCCcccEEeccCC
Q 047584 618 DSVGDLRYLRYLNLSGT 634 (883)
Q Consensus 618 ~~i~~l~~L~~L~L~~~ 634 (883)
+++.++++|+.|.+.+.
T Consensus 133 ~s~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDI 149 (362)
T ss_dssp TTHHHHTTCSEEEECCC
T ss_pred HhhhhcchhhheeecCc
Confidence 34556667777777543
No 192
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.73 E-value=1.8e-05 Score=74.77 Aligned_cols=85 Identities=15% Similarity=0.267 Sum_probs=62.2
Q ss_pred CceeEEeeCCCCCCCc-CccccCCCcccEEeccCCC-cccc-ccccccC----CCccEEecCCCCchhhc-hhhhcCcCC
Q 047584 601 QRLRVFSLRGYCIPEL-PDSVGDLRYLRYLNLSGTV-IRSL-PESVNKL----YNLHSLLLEDCDRLKKL-CADMGNLIK 672 (883)
Q Consensus 601 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~-i~~l-p~~i~~l----~~L~~L~l~~c~~l~~l-p~~i~~L~~ 672 (883)
..|+.||+++|.++.. ...+.++++|++|+|++|. |+.- -..++.+ ++|++|+|++|..++.- -..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3589999999987653 3567889999999999984 6521 2344543 47999999999877542 234678899
Q ss_pred CCceecCCCCCcc
Q 047584 673 LHHLKNSNTDSLE 685 (883)
Q Consensus 673 L~~L~l~~~~~~~ 685 (883)
|++|++++|..++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999987444
No 193
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.73 E-value=0.00016 Score=80.98 Aligned_cols=145 Identities=17% Similarity=0.158 Sum_probs=79.6
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC------Ce-EEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF------DL-KAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~-~~wv~~s~~~~~~ 260 (883)
..++||+.+++++++.|.... ..-+.|+|++|+|||++|+.+++. +...+ +. .+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 469999999999999996532 235679999999999999999873 32211 11 1222222
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHHHh-
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAKI- 339 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~- 339 (883)
....+ .....+...+...-..++.+|++| ... +....+...+.. ..-++|.+|........
T Consensus 246 -------~~~~g-----~~e~~~~~~~~~~~~~~~~iLfiD--~~~--~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 -------TKYRG-----EFEDRLKKVMDEIRQAGNIILFID--AAI--DASNILKPSLAR--GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C----------CCCTTS--SSCEEEEECCTTTTHHHH
T ss_pred -------ccccc-----hHHHHHHHHHHHHHhcCCeEEEEe--Cch--hHHHHHHHhhcC--CCEEEEecCCHHHHHHHh
Confidence 00000 000112233333334667899999 111 222334444432 23456665554432111
Q ss_pred ------cCCCccEeCCCCCHHhHHHHHHhhh
Q 047584 340 ------MSLDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 340 ------~~~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
......+.+...+.++...++....
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1122468999999999999998654
No 194
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.71 E-value=0.00031 Score=75.77 Aligned_cols=187 Identities=13% Similarity=0.055 Sum_probs=100.8
Q ss_pred cceecchhhHHHHHHHHcC----CCC--CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLK----DDS--RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
..++|.+..++.|.+.+.. .+. ......+.|.|+|++|+|||+||+.+++. .... .+.++++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~~-- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTSK-- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhcc--
Confidence 5689999999999887742 100 00123467899999999999999999873 2222 234444321110
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hhhHhhhcccccC----CCCCcE
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN-----------YTDWARLSLPFQA----GAQGSK 326 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~~gs~ 326 (883)
........+...+...-..++.+|+||++.... ......+...+.. ...+..
T Consensus 157 -------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 157 -------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred -------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 000001111112222223567899999983210 0111222222221 123445
Q ss_pred EEEeCCCh-hHHHh--cCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCC-ChHHHHHHH
Q 047584 327 IVVTTRNE-EVAKI--MSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNG-LPLAAKTLG 398 (883)
Q Consensus 327 ilvTTR~~-~va~~--~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~ 398 (883)
||.||... .+... ......+.+...+.++...++...+..... . -..+....|++.+.| .+-.+..+.
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~---l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-C---LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-C---CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-C---ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55566542 22111 122346788889999988888776532211 1 114567788999988 555666554
No 195
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.69 E-value=1e-05 Score=87.89 Aligned_cols=83 Identities=19% Similarity=0.150 Sum_probs=38.9
Q ss_pred CCceeEEeeCCCCCCCc-----Cccc-cCCCcccEEeccCCCccc-----cccccccCCCccEEecCCCCch----hhch
Q 047584 600 LQRLRVFSLRGYCIPEL-----PDSV-GDLRYLRYLNLSGTVIRS-----LPESVNKLYNLHSLLLEDCDRL----KKLC 664 (883)
Q Consensus 600 l~~Lr~L~L~~~~~~~l-----p~~i-~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~l----~~lp 664 (883)
+++|+.|+|++|.++.. ...+ ....+|++|+|++|.++. ++..+..+++|++|+|++|..- ..++
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 44555555555555431 1111 233455555555555542 3334445555555555554311 1223
Q ss_pred hhhcCcCCCCceecCCCC
Q 047584 665 ADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 665 ~~i~~L~~L~~L~l~~~~ 682 (883)
..+...++|++|++++|.
T Consensus 205 ~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHGGGCSCCCEEECCSSC
T ss_pred HHHhcCCCcCeEECCCCC
Confidence 344445555555555554
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.67 E-value=0.0011 Score=69.48 Aligned_cols=183 Identities=11% Similarity=0.059 Sum_probs=97.8
Q ss_pred cceecchhhHHHHHHHHcCCC------CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDD------SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
..++|.+..++.|.+++..+. .......+.+.|+|++|+|||++|+.+++. .... .+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 578999999999988773210 000112467899999999999999999873 2222 23344332110
Q ss_pred HHHHHHHHhccCCCCCCChHHHH-HHHHHHhCCCcEEEEEeCCCCCCh-----------hhHhhhcc---cccCC--CCC
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQ-EELKKQLSRKKFLLVLDDVWNENY-----------TDWARLSL---PFQAG--AQG 324 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~-~~l~~~L~~kr~LlVlDdv~~~~~-----------~~~~~l~~---~l~~~--~~g 324 (883)
. .. ....... ..+......++.+|++|++..... .....+.. .++.. ..+
T Consensus 93 -----------~-~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------K-YV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------S-SC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------c-cc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 0 00 1112222 222223345678999999954311 00111111 11111 123
Q ss_pred cEEEEeCCChh-----HHHhcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChH-HHHHH
Q 047584 325 SKIVVTTRNEE-----VAKIMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPL-AAKTL 397 (883)
Q Consensus 325 s~ilvTTR~~~-----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 397 (883)
..||.||.... +... ....+.+...+.++...++...+-.... . -..+....|++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~-~---~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS-P---LDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC-C---SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 45666666532 2221 2346777888888888887765432111 1 113456788889999875 45444
No 197
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.65 E-value=5.3e-05 Score=74.63 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=62.6
Q ss_pred hhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCC
Q 047584 195 TEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQT 274 (883)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~ 274 (883)
..++.+.+++..... ....+.+.|+|++|+|||+||+.+++. .......++|+++. .+...+......
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc--
Confidence 344555666654321 111267899999999999999999984 33333456666543 344444332221
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhh--hcc-cccCC-CCCcEEEEeCCC
Q 047584 275 VDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWAR--LSL-PFQAG-AQGSKIVVTTRN 333 (883)
Q Consensus 275 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~ilvTTR~ 333 (883)
.........+. . .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ---~~~~~~~~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 12233323332 1 2399999997654444332 211 12111 235568888875
No 198
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=3.5e-05 Score=78.63 Aligned_cols=78 Identities=24% Similarity=0.281 Sum_probs=51.3
Q ss_pred CCCceeEEeeCCCCCCCcC---ccccCCCcccEEeccCCCccccccccccCC--CccEEecCCCCchhhch-------hh
Q 047584 599 KLQRLRVFSLRGYCIPELP---DSVGDLRYLRYLNLSGTVIRSLPESVNKLY--NLHSLLLEDCDRLKKLC-------AD 666 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp---~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~l~~c~~l~~lp-------~~ 666 (883)
++++|+.|+|++|.++.++ ..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5778888888888876543 4556778888888888887766 3344444 77778887754333333 22
Q ss_pred hcCcCCCCcee
Q 047584 667 MGNLIKLHHLK 677 (883)
Q Consensus 667 i~~L~~L~~L~ 677 (883)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55677777765
No 199
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.62 E-value=7.5e-05 Score=90.55 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=80.3
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhc---cC-C-eEEEEEeCCCCCHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQD---HF-D-LKAWTCVSEDFDVKGL 262 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-~-~~~wv~~s~~~~~~~~ 262 (883)
..++||+.++.++++.|.... ..-+.++|++|+|||+||+.+++...-.. .. + ..++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 468999999999999996542 23478999999999999999997421100 01 1 233333321100
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHHhC-CCcEEEEEeCCCCCC--------hhhHhhhcccccCCCCCcEEEEeCCC
Q 047584 263 TRTILSSITKQTVDNNDLNFLQEELKKQLS-RKKFLLVLDDVWNEN--------YTDWARLSLPFQAGAQGSKIVVTTRN 333 (883)
Q Consensus 263 ~~~il~~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTTR~ 333 (883)
+..........+...+...-. +++.+|++|++.... .+....+...+.. .+-.+|.+|..
T Consensus 240 ---------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~ 308 (854)
T 1qvr_A 240 ---------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTL 308 (854)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECH
T ss_pred ---------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCc
Confidence 000001111122223333323 468999999996532 1111112222222 23345555544
Q ss_pred hhHHH------hcCCCccEeCCCCCHHhHHHHHHhh
Q 047584 334 EEVAK------IMSLDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 334 ~~va~------~~~~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
..... .......+.+++++.++...++...
T Consensus 309 ~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 309 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 33211 1122245889999999999988643
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.62 E-value=0.00054 Score=71.96 Aligned_cols=180 Identities=16% Similarity=0.135 Sum_probs=97.8
Q ss_pred cceecchhhHHHHHHHHcCCC-------CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDD-------SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.+++|.+..+++|.+++...- ..+-...+.+.|+|++|+|||+||+.+++. .... ++.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 568999999988887764210 000123467899999999999999999973 2222 22332 22
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh--------------hhHhhhcccccC--CCCC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY--------------TDWARLSLPFQA--GAQG 324 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 324 (883)
++... ..+.. ...+...+.......+.+|++|++..... .....+...+.. ...+
T Consensus 84 ~l~~~----~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTM----WFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHH----HHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhh----hcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 33222 21111 12233334444445789999999953100 011222222211 1234
Q ss_pred cEEEEeCCChh-HHHh-cC---CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChH
Q 047584 325 SKIVVTTRNEE-VAKI-MS---LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPL 392 (883)
Q Consensus 325 s~ilvTTR~~~-va~~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL 392 (883)
..||.||.... +... .. -...+.+...+.++-.+++....-... ...... ...+++.+.|.|=
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~-~~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHTCSSCCH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC-CCccch----HHHHHHHcCCCCH
Confidence 56777776543 2221 12 234688999999998888877653221 111122 2345666777664
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.60 E-value=0.00092 Score=74.30 Aligned_cols=188 Identities=14% Similarity=0.118 Sum_probs=100.7
Q ss_pred cceecchhhHHHHHHHHcC----CCC--CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLK----DDS--RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
.+++|.+..++.|.+.+.. +.. ......+-|.|+|++|+|||+||+++++. . ...-++.++.. .
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~----~ 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSS----D 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHH----H
Confidence 6789999999999887731 100 00123467899999999999999999973 2 11223334332 1
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh-------h----hHhhhcccccC---CCCCcEE
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY-------T----DWARLSLPFQA---GAQGSKI 327 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-------~----~~~~l~~~l~~---~~~gs~i 327 (883)
+... ..+. ...... ..+...-..++.+|+||++..... . ....+...+.. ...+..|
T Consensus 204 l~~~----~~g~--~~~~~~---~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LVSK----WLGE--SEKLVK---NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp --------------CCCTHH---HHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HHhh----hcch--HHHHHH---HHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 1111 1010 111122 222222235688999999964310 0 11222222221 2345666
Q ss_pred EEeCCChhH-HH--hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCC-hHHHHHHH
Q 047584 328 VVTTRNEEV-AK--IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGL-PLAAKTLG 398 (883)
Q Consensus 328 lvTTR~~~v-a~--~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~~ 398 (883)
|.||..... .. .......+.+...+.++...+|......... .--......|++.+.|. +-.|..+.
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 667755321 11 1122356778888888888888876532211 11134567888999884 44554443
No 202
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.56 E-value=4.4e-05 Score=70.47 Aligned_cols=110 Identities=10% Similarity=0.111 Sum_probs=61.9
Q ss_pred ceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHH
Q 047584 189 KVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILS 268 (883)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~ 268 (883)
.++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... -++.+.-. +.. ...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~-~~~---~~~-- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARV-EYL---IDM-- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSST-THH---HHC--
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechh-hCC---hHh--
Confidence 578999999888887753211 113477999999999999999987422 22222211 111 110
Q ss_pred HhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCC-CCCcEEEEeCCC
Q 047584 269 SITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAG-AQGSKIVVTTRN 333 (883)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTTR~ 333 (883)
...+.+. .+.-.|+||++..........+...+... ..+.++|.||..
T Consensus 67 ---------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ---------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0111111 12347889999877655555554444332 245678877753
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=0.00029 Score=73.82 Aligned_cols=149 Identities=9% Similarity=0.011 Sum_probs=92.6
Q ss_pred cchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchh-hhccCCeEEEEEeCC-CCCHHHHHHHHHHH
Q 047584 192 GRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKR-VQDHFDLKAWTCVSE-DFDVKGLTRTILSS 269 (883)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~-~~~~~~~~~~il~~ 269 (883)
|-++.++.|...+... ......++|++|.||||+|+.+.+... .........++..+. ...++.+ +++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHH
Confidence 3455667777777543 257899999999999999999986311 111122234454432 2333322 334443
Q ss_pred hccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCCh-hHHHhcCCCccEeC
Q 047584 270 ITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNE-EVAKIMSLDQAYEL 348 (883)
Q Consensus 270 l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~va~~~~~~~~~~l 348 (883)
+...+. .+++-++|+|++........+.+...+......+.+|++|.+. .+......- .+++
T Consensus 74 ~~~~p~----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSPE----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCCS----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhccc----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 322110 2457789999998877777777777776666677777766443 333333223 8999
Q ss_pred CCCCHHhHHHHHHhhh
Q 047584 349 KSLSTEDCLSVLAQHS 364 (883)
Q Consensus 349 ~~L~~~~~~~Lf~~~a 364 (883)
.++++++....+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999888765
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.52 E-value=0.0037 Score=66.63 Aligned_cols=175 Identities=18% Similarity=0.170 Sum_probs=93.4
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
..++|.+..++.+...+..... .......+.|+|++|+||||||+.+++. ....|. ..+..-.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~~~------- 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVKQG------- 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCSHH-------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcCHH-------
Confidence 4678988777777666643200 0112357899999999999999999973 322211 11111001111
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCC------------------CCcEE-E
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGA------------------QGSKI-V 328 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~i-l 328 (883)
++...+ ..+ .++-++++|++........+.+...+.... ..-.+ -
T Consensus 92 --------------~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 92 --------------DMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp --------------HHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred --------------HHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 111111 112 234577788886543322333321111110 01112 2
Q ss_pred EeCCChhHHHhc--CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChHHHH
Q 047584 329 VTTRNEEVAKIM--SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPLAAK 395 (883)
Q Consensus 329 vTTR~~~va~~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 395 (883)
.|++...+.... .....+.+++.+.++-.+++.+.+-.... .-..+.+..|++.++|.|-.+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHH
Confidence 355543332211 11235789999999999999877532111 1225678899999999996544
No 205
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.47 E-value=0.00044 Score=73.14 Aligned_cols=122 Identities=15% Similarity=0.213 Sum_probs=66.9
Q ss_pred cceecchhhHHHHHHHHcCCC---CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDD---SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
..++|.+..++.+...+.... .........+.|+|++|+|||++|+.++.. ....-...+.+.++...... ...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHH
Confidence 357899998888887775421 001122468999999999999999999873 22211234555555433221 111
Q ss_pred HHHHHhccCC--CCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccc
Q 047584 265 TILSSITKQT--VDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPF 318 (883)
Q Consensus 265 ~il~~l~~~~--~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l 318 (883)
.+ ++... ........+...+. ....-+|+||++..........+...+
T Consensus 94 ~l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 94 RL---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp HH---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred Hh---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 11 11111 01111122222222 134579999999777655555554444
No 206
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.47 E-value=0.0018 Score=70.78 Aligned_cols=187 Identities=12% Similarity=0.085 Sum_probs=98.2
Q ss_pred cceecchhhHHHHHHHHcCC----CC--CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLKD----DS--RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
..++|.+..++.|.+++... .. ......+-|.|+|++|+|||+||+.+++. .... .+.++++.-.. .
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~--~ 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTS--K 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhc--c
Confidence 67999999999998887321 00 00112467899999999999999999863 2222 23333322111 0
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hhhHhhhccccc---C-CCCCcE
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNEN-----------YTDWARLSLPFQ---A-GAQGSK 326 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~---~-~~~gs~ 326 (883)
. .......+...+...-...+.+|+||++.... ......+...+. . ......
T Consensus 188 ~-------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 Y-------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred c-------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0 00111122222222223456899999995320 001111111111 1 122344
Q ss_pred EEEeCCCh-hHHH--hcCCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCChH-HHHHHH
Q 047584 327 IVVTTRNE-EVAK--IMSLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLPL-AAKTLG 398 (883)
Q Consensus 327 ilvTTR~~-~va~--~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~ 398 (883)
||.||... .+.. .......+.+...+.++...++...+..... .-..+....|++.+.|..- ++..+.
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55566542 2211 1122346888999999999998876533211 1113467788999988554 554443
No 207
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.41 E-value=8.7e-05 Score=71.84 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=38.5
Q ss_pred CCCceeEEeeCCCCCCC-----cCccccCCCcccEEeccCCCccc-----cccccccCCCccEEec--CCCCch----hh
Q 047584 599 KLQRLRVFSLRGYCIPE-----LPDSVGDLRYLRYLNLSGTVIRS-----LPESVNKLYNLHSLLL--EDCDRL----KK 662 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l--~~c~~l----~~ 662 (883)
..++|++|+|++|.+.. +...+...++|++|+|++|.|.. +...+...++|++|+| ++|..- ..
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 34555555555555442 22333334455555555555542 3344444555555555 332211 11
Q ss_pred chhhhcCcCCCCceecCCCC
Q 047584 663 LCADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 663 lp~~i~~L~~L~~L~l~~~~ 682 (883)
+...+...++|++|++++|.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCcCEEeccCCC
Confidence 22333444555555555544
No 208
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.38 E-value=0.001 Score=72.88 Aligned_cols=81 Identities=10% Similarity=0.049 Sum_probs=52.2
Q ss_pred CCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCCCCC--CCCCcCcccceeccCcccceecCCCccCCC
Q 047584 779 VLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICTALP--SVGQLPSLKHLVVCGMSSVRRLDPEFYGKD 856 (883)
Q Consensus 779 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~ 856 (883)
.+..+.+|+.+.+..+ ...++..... .+.+|+.++|.++ ++.++ .+..+.+|+.+.|..+ ++.|+..-+.
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~-~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~-- 363 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFE-SCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQ-- 363 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTT-TCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBT--
T ss_pred cccccccccccccccc-cceechhhhc-CCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhh--
Confidence 3455677888877543 3344433321 3678888888643 44454 6778889999888643 7777654332
Q ss_pred CCCCCCCcceeecc
Q 047584 857 ASIPFPYLETLRFE 870 (883)
Q Consensus 857 ~~~~~p~L~~L~l~ 870 (883)
.+++|+.+.|.
T Consensus 364 ---~C~~L~~i~lp 374 (394)
T 4fs7_A 364 ---GCINLKKVELP 374 (394)
T ss_dssp ---TCTTCCEEEEE
T ss_pred ---CCCCCCEEEEC
Confidence 47888888764
No 209
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.38 E-value=0.0014 Score=78.63 Aligned_cols=154 Identities=17% Similarity=0.223 Sum_probs=86.3
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhh----ccCCeEEEE-EeCCCCCHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ----DHFDLKAWT-CVSEDFDVKGL 262 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv-~~s~~~~~~~~ 262 (883)
..++||+.+++++++.|.... ..-+.|+|.+|+|||++|+.+++...-. ..+...+|. ..+. +
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H
Confidence 468999999999999996542 3457899999999999999998732110 012333332 1111 0
Q ss_pred HHHHHHHhccCCCCCCChHHH-HHHHHHHhCCCcEEEEEeCCCCC--------ChhhHhh-hcccccCCCCCcEEEEeCC
Q 047584 263 TRTILSSITKQTVDNNDLNFL-QEELKKQLSRKKFLLVLDDVWNE--------NYTDWAR-LSLPFQAGAQGSKIVVTTR 332 (883)
Q Consensus 263 ~~~il~~l~~~~~~~~~~~~~-~~~l~~~L~~kr~LlVlDdv~~~--------~~~~~~~-l~~~l~~~~~gs~ilvTTR 332 (883)
+.+... ....+.. ...+...-..++.+|++|++... ...+... +...+.. .+.++|.+|.
T Consensus 254 -------~~~~~~-~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------LAGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTT 323 (758)
T ss_dssp --------CCCCC-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEEC
T ss_pred -------hccccc-cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeC
Confidence 000111 1122222 22333333446799999999654 1222222 3333322 3456666665
Q ss_pred ChhHHHhcC-------CCccEeCCCCCHHhHHHHHHhh
Q 047584 333 NEEVAKIMS-------LDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 333 ~~~va~~~~-------~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
......... ....+.+...+.++..+++...
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 544322111 1135889999999988888754
No 210
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.36 E-value=0.00073 Score=75.50 Aligned_cols=97 Identities=8% Similarity=0.007 Sum_probs=60.1
Q ss_pred EEEEEeCCCCCChhhHhhhcccccCCCCCcEEE-Ee---------CC----Chh-HHHhcCCCccEeCCCCCHHhHHHHH
Q 047584 296 FLLVLDDVWNENYTDWARLSLPFQAGAQGSKIV-VT---------TR----NEE-VAKIMSLDQAYELKSLSTEDCLSVL 360 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vT---------TR----~~~-va~~~~~~~~~~l~~L~~~~~~~Lf 360 (883)
-++++|++...+.+..+.+...+...... .+| .| |. ... .....+....+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999888777777777766655444 344 44 32 111 1112222245799999999999999
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHhc-CCChHHHHHH
Q 047584 361 AQHSLETTDFSSHKSLEEIGKEIVIKC-NGLPLAAKTL 397 (883)
Q Consensus 361 ~~~a~~~~~~~~~~~l~~~~~~I~~~c-~GlPLai~~~ 397 (883)
...+-.... . --++....|++.+ +|.|-.+..+
T Consensus 376 ~~~~~~~~~-~---~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGI-N---ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTC-C---BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCC-C---CCHHHHHHHHHHccCCCHHHHHHH
Confidence 876531111 1 1145667788888 7888755443
No 211
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.35 E-value=0.00065 Score=81.27 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=80.8
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhcc------CCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDH------FDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~s~~~~~~~ 261 (883)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++. +... .++. ++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~-~~~~~~------ 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKR-VMTLDM------ 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCC-EECC--------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCe-EEEecc------
Confidence 469999999999999996542 234789999999999999999873 2110 0111 111111
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHHHhc-
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAKIM- 340 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~- 340 (883)
+ ..........+...+...-..++.+|++|. .. +....+...+.. ..-++|.||.........
T Consensus 245 ---------g-~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~--~~--~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 ---------G-TKYRGEFEDRLKKVMDEIRQAGNIILFIDA--AI--DASNILKPSLAR--GELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHT
T ss_pred ---------c-ccccchHHHHHHHHHHHHHhcCCEEEEEcC--ch--hHHHHHHHHHhc--CCEEEEeCCChHHHHHHhh
Confidence 0 000001111233334444456788999992 11 222233433332 245666666554421110
Q ss_pred ------CCCccEeCCCCCHHhHHHHHHhhh
Q 047584 341 ------SLDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 341 ------~~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
.....+.++..+.++...++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112468999999999999998654
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.32 E-value=0.00069 Score=75.82 Aligned_cols=185 Identities=12% Similarity=0.110 Sum_probs=99.7
Q ss_pred cceecchhhHHHHHHHHcCCCC-------CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS-------RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
..++|.+..+++|.+++...-. .+....+-|.|+|++|+|||++|+++++. .... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEch------
Confidence 4689999999999887743100 00112356899999999999999999873 2222 2333321
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC--------Ch---hhHhhhcccccC--CCCCcEE
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNE--------NY---TDWARLSLPFQA--GAQGSKI 327 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--------~~---~~~~~l~~~l~~--~~~gs~i 327 (883)
.+ ...+ .......+...+.....+++.+|+||++... .. .....+...+.. ...+.+|
T Consensus 273 ~l----~~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 EI----MSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp HH----HTSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred Hh----hhhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11 1111 1111122333444444567889999998311 00 111222222221 2234456
Q ss_pred EEeCCChh-HHHhc----CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCC-hHHHHHH
Q 047584 328 VVTTRNEE-VAKIM----SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGL-PLAAKTL 397 (883)
Q Consensus 328 lvTTR~~~-va~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 397 (883)
|.||.... +.... .....+.+...+.++-.++|..++-.... ..... ..++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 66665542 22221 12346889999999999999877532211 11112 35567777774 5444443
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.29 E-value=0.00013 Score=67.64 Aligned_cols=87 Identities=17% Similarity=0.033 Sum_probs=50.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRK 294 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~k 294 (883)
...+.|+|+.|+|||||++.+++..... .+ ..+++........ . +..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~-----------------------------~-~~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT-----------------------------D-AAFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC-----------------------------G-GGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH-----------------------------H-HHhC
Confidence 3689999999999999999999843221 11 2566665432211 0 1124
Q ss_pred cEEEEEeCCCCCChhhHhhhcccccCC-CCCc-EEEEeCCC
Q 047584 295 KFLLVLDDVWNENYTDWARLSLPFQAG-AQGS-KIVVTTRN 333 (883)
Q Consensus 295 r~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTTR~ 333 (883)
.-+|||||+...+...-..+...+... ..|. +||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 568899999765433322222222111 1233 48888874
No 214
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0022 Score=68.82 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=96.2
Q ss_pred cceecchhhHHHHHHHHcC----CC---CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLK----DD---SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++.|-++.+++|.+.+.- ++ ..+-...+-|.++|++|.|||.||+++++ +....| +.|+.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--
Confidence 6788999988888766532 10 00122356789999999999999999998 343333 3343332111
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh--------h--h----Hhhhccccc--CCCCC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY--------T--D----WARLSLPFQ--AGAQG 324 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--------~--~----~~~l~~~l~--~~~~g 324 (883)
.+-......+...+...-...+++|++|++...-. . . ...+...+. ....+
T Consensus 221 -------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 -------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp -------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred -------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 00011111122222222245789999999954210 0 0 111222221 12234
Q ss_pred cEEEEeCCChhH---HHhc--CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh
Q 047584 325 SKIVVTTRNEEV---AKIM--SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 325 s~ilvTTR~~~v---a~~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 391 (883)
-.||.||...+. |-.. .-...+.++..+.++-.++|..+.-... ....-+ ...|++.+.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCC----HHHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHCCCCC
Confidence 456666654332 2111 2346788988888888888876653221 111122 456777887753
No 215
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.24 E-value=0.00042 Score=71.38 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=33.3
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..++|.+..+.++.+.+..... ...-|.|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4588999999888877654211 1245789999999999999999874
No 216
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.23 E-value=0.00011 Score=71.18 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=67.3
Q ss_pred cCCCceeEEeeCCC-CCCC-----cCccccCCCcccEEeccCCCccc-----cccccccCCCccEEecCCCCch----hh
Q 047584 598 LKLQRLRVFSLRGY-CIPE-----LPDSVGDLRYLRYLNLSGTVIRS-----LPESVNKLYNLHSLLLEDCDRL----KK 662 (883)
Q Consensus 598 ~~l~~Lr~L~L~~~-~~~~-----lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~l----~~ 662 (883)
...+.|++|+|++| .+.. +...+....+|++|+|++|.|.. +...+...++|++|+|++|..- ..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 37889999999999 8763 45667778999999999999873 4566677789999999996432 23
Q ss_pred chhhhcCcCCCCceec--CCCC
Q 047584 663 LCADMGNLIKLHHLKN--SNTD 682 (883)
Q Consensus 663 lp~~i~~L~~L~~L~l--~~~~ 682 (883)
+...+...++|++|++ ++|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHhCCCceEEEecCCCCC
Confidence 5666788899999999 6676
No 217
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.16 E-value=0.00026 Score=72.14 Aligned_cols=81 Identities=25% Similarity=0.191 Sum_probs=59.5
Q ss_pred cCCCcccEEeccCCCccccc---cccccCCCccEEecCCCCchhhchhhhcCcC--CCCceecCCCCCccccCc------
Q 047584 621 GDLRYLRYLNLSGTVIRSLP---ESVNKLYNLHSLLLEDCDRLKKLCADMGNLI--KLHHLKNSNTDSLEEMPL------ 689 (883)
Q Consensus 621 ~~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~--~L~~L~l~~~~~~~~~p~------ 689 (883)
.++++|++|+|++|.|+.++ ..+..+++|++|+|++ |.+..+ ..+..+. +|++|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 56889999999999998654 5677999999999999 456655 3345555 999999999984334442
Q ss_pred -cCCCCCCCCccCce
Q 047584 690 -GIVRLTCLQTLCNF 703 (883)
Q Consensus 690 -~i~~L~~L~~L~~~ 703 (883)
.+..+++|+.|...
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 25566777777443
No 218
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.13 E-value=0.0059 Score=62.30 Aligned_cols=183 Identities=14% Similarity=0.160 Sum_probs=92.3
Q ss_pred cceecchhhHHHHHHHH---cCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELL---LKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
.+++|.+..++++.+.+ ..... .+....+-+.|+|++|+||||||+.+++. ....| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 57899988877765543 22110 00112345889999999999999999873 22222 3333221110
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh--------------hhHhhhcccccC--CCCCc
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY--------------TDWARLSLPFQA--GAQGS 325 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs 325 (883)
.........+...+.......+.++++|++..... .....+...+.. ...+.
T Consensus 84 ------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 ------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp ------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred ------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 00111222333344444455678999999832100 011112111111 12345
Q ss_pred EEEEeCCChh-HHHhc-C---CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCC-ChHHHH
Q 047584 326 KIVVTTRNEE-VAKIM-S---LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNG-LPLAAK 395 (883)
Q Consensus 326 ~ilvTTR~~~-va~~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~ 395 (883)
.||.||...+ +.... . -...+.+...+.++-.+++....-... ..... ....++..+.| .+--+.
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~----~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDI----DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTC----CHHHHHHTCTTCCHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCccc----cHHHHHHHcCCCCHHHHH
Confidence 5666665543 22211 1 234677888888887777766542211 11111 13456777888 564444
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.12 E-value=0.00065 Score=71.34 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=36.1
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..++|++..+.++.+.+..... ...-|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3578999999988887754321 1235779999999999999999873
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.11 E-value=0.0013 Score=69.46 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=37.1
Q ss_pred cceecchhhHHHHHHHHcCC--CCC------CCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 188 AKVYGRETEKKEIVELLLKD--DSR------NDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..++|.+..++.+...+... ... ......-+.|+|++|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999998877541 000 0012346789999999999999999873
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.11 E-value=0.0006 Score=81.59 Aligned_cols=155 Identities=14% Similarity=0.237 Sum_probs=86.6
Q ss_pred cceecchhhHHHHHHHHcCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
..++|.+..++.+.+.+..... ........+.++|++|+|||++|+.+++. ....-...+.++++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccccc---
Confidence 5689999999888888764211 01122347999999999999999999873 222222345555543221100
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCC-----------CCCcEEEEeCCC
Q 047584 265 TILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAG-----------AQGSKIVVTTRN 333 (883)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTTR~ 333 (883)
. ....+...+++ ...-+|+||++.....+....+...+..+ ....+||+||..
T Consensus 566 -----------~--~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 566 -----------T--SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -----------C--C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -----------c--ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 01111112221 23458999999877666555555444331 134578888873
Q ss_pred -----hh----HHHhc-----C-CCccEeCCCCCHHhHHHHHHhh
Q 047584 334 -----EE----VAKIM-----S-LDQAYELKSLSTEDCLSVLAQH 363 (883)
Q Consensus 334 -----~~----va~~~-----~-~~~~~~l~~L~~~~~~~Lf~~~ 363 (883)
.. +.... . -...+.+.+++.++...++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 11 11111 1 1246778888887777766553
No 222
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0023 Score=69.78 Aligned_cols=51 Identities=31% Similarity=0.274 Sum_probs=38.1
Q ss_pred cceecchhhHHHHHHHHcCC----C---CCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 188 AKVYGRETEKKEIVELLLKD----D---SRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.++.|-+..+++|.+.+.-. + .-+-...+-|.++|++|.|||+||+++++.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 67889999998887766321 0 001234577999999999999999999983
No 223
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0025 Score=69.58 Aligned_cols=179 Identities=15% Similarity=0.169 Sum_probs=95.9
Q ss_pred cceecchhhHHHHHHHHcC----CC---CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLK----DD---SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++.|-++.+++|.+.+.- ++ ..+-...+-|.++|++|.|||.||+++++. ....| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 6788999888888766632 10 001234578999999999999999999983 33333 3344332211
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh----------h----hHhhhccccc--CCCCC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY----------T----DWARLSLPFQ--AGAQG 324 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----------~----~~~~l~~~l~--~~~~g 324 (883)
.+.......+...+...-...+++|++|++...-. . ....+...+. ....+
T Consensus 254 -------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 -------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp -------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred -------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 00011111112222222245789999999953210 0 0112222221 12334
Q ss_pred cEEEEeCCChhHH-Hhc-CC---CccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh
Q 047584 325 SKIVVTTRNEEVA-KIM-SL---DQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 325 s~ilvTTR~~~va-~~~-~~---~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 391 (883)
..||.||-..+.. ..+ .. ...+.++..+.++-.++|..+.-.... ...-+ ...|++.+.|+-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 5677777654322 221 22 245778888888888888766533221 11112 356778887753
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.06 E-value=0.00038 Score=71.83 Aligned_cols=51 Identities=27% Similarity=0.280 Sum_probs=34.9
Q ss_pred cceecchhhHHHHHHHHcCCCCC------CCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 188 AKVYGRETEKKEIVELLLKDDSR------NDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+++|.+..++.+.+.+..-... +....+-+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 56899998888877765410000 0011233779999999999999999973
No 225
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.006 Score=66.41 Aligned_cols=179 Identities=17% Similarity=0.149 Sum_probs=94.8
Q ss_pred cceecchhhHHHHHHHHcC----CCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLK----DDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++.|-++.+++|.+.+.- ++. -+-...+-|.++|++|.|||.||+++++ +....| +.|+.+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhc--
Confidence 4688999988888765421 100 0123457889999999999999999998 343333 3333322110
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh--------h------hHhhhccccc--CCCCC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY--------T------DWARLSLPFQ--AGAQG 324 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--------~------~~~~l~~~l~--~~~~g 324 (883)
.+-......+...+...-...+++|++|++...-. . ....+...+. ....+
T Consensus 282 -------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 282 -------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp -------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred -------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 00001111122222222345789999999953210 0 0111111111 12234
Q ss_pred cEEEEeCCChh-H--HHhc--CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh
Q 047584 325 SKIVVTTRNEE-V--AKIM--SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 325 s~ilvTTR~~~-v--a~~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 391 (883)
..||.||-..+ + |-.. .-...+.+...+.++-.++|..+.-... ....-. ...|++.|.|+-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCCC
Confidence 45566665432 2 2111 2346788888888888888876653221 111112 355777887753
No 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.94 E-value=0.0037 Score=69.36 Aligned_cols=179 Identities=14% Similarity=0.169 Sum_probs=94.6
Q ss_pred cceecchhhHHHHHHHHc---CCC---CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLL---KDD---SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~---~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
.+++|.+..++++.+.+. ... .-+....+-|.|+|++|+|||+||+.+++. ....| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 568999988777765542 210 001112244889999999999999999973 32222 23443322110
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh--------------hhHhhhccccc--CCCCCc
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY--------------TDWARLSLPFQ--AGAQGS 325 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~gs 325 (883)
+ ...........+.......+.+|+||++..... .....+...+. ....+.
T Consensus 89 --------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 000111223334444456789999999954211 11222222221 112355
Q ss_pred EEEEeCCChhHHH-h-cC---CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh
Q 047584 326 KIVVTTRNEEVAK-I-MS---LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 326 ~ilvTTR~~~va~-~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 391 (883)
.||.||...+... . .. -...+.+...+.++-.+++..++-... ...... ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 6777776654322 1 12 223678888888887778776553221 111111 344788888876
No 227
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.88 E-value=0.0034 Score=68.70 Aligned_cols=91 Identities=11% Similarity=0.040 Sum_probs=56.8
Q ss_pred hcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCC
Q 047584 744 QMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICT 823 (883)
Q Consensus 744 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 823 (883)
.+..+.+|+.+.+..+ . ....-..+..+.+|+.+.|..+ ...++..... .+.+|+.++|..+ ++
T Consensus 292 ~F~~~~~L~~i~l~~~--i----------~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-~c~~L~~i~lp~~--l~ 355 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS--V----------KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR-GCTSLSNINFPLS--LR 355 (394)
T ss_dssp TTTTCTTCCEEEECTT--C----------CEECTTTTTTCTTCCEECCCTT-CCEECTTTTT-TCTTCCEECCCTT--CC
T ss_pred cccccccccccccccc--c----------ceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc-CCCCCCEEEECcc--cc
Confidence 3556778888877431 0 0001234667888999888543 4445443322 3789999999765 44
Q ss_pred CCC--CCCCcCcccceeccCcccceecCCCc
Q 047584 824 ALP--SVGQLPSLKHLVVCGMSSVRRLDPEF 852 (883)
Q Consensus 824 ~l~--~l~~lp~L~~L~L~~~~~l~~i~~~~ 852 (883)
.++ .+..+++|+.++|..+ ++.+...|
T Consensus 356 ~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F 384 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELPKR--LEQYRYDF 384 (394)
T ss_dssp EECTTTBTTCTTCCEEEEEGG--GGGGGGGB
T ss_pred EehHHHhhCCCCCCEEEECCC--CEEhhhee
Confidence 554 7888999999999643 44444333
No 228
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.84 E-value=0.015 Score=63.61 Aligned_cols=105 Identities=10% Similarity=0.095 Sum_probs=60.7
Q ss_pred hcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCCCCC
Q 047584 744 QMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCGICT 823 (883)
Q Consensus 744 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 823 (883)
.+.++.+|+.+.+... . ....-..+..+++|+.+.+.. ....++..... .+.+|+.++|..+ ++
T Consensus 260 aF~~c~~L~~i~lp~~--~----------~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~-~c~~L~~i~lp~~--v~ 323 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS--V----------VSIGTGAFMNCPALQDIEFSS-RITELPESVFA-GCISLKSIDIPEG--IT 323 (394)
T ss_dssp TTTTCSSCCEEECCTT--C----------CEECTTTTTTCTTCCEEECCT-TCCEECTTTTT-TCTTCCEEECCTT--CC
T ss_pred eeeecccccEEecccc--c----------ceecCcccccccccccccCCC-cccccCceeec-CCCCcCEEEeCCc--cc
Confidence 4666777777776321 0 000122345567777777743 33445544332 3677888888653 34
Q ss_pred CCC--CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeeccc
Q 047584 824 ALP--SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRFED 871 (883)
Q Consensus 824 ~l~--~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l~~ 871 (883)
.+. .+..+.+|+.+.|-. +++.|+..-+. .+++|+.+.+.+
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~-----~C~~L~~i~~~~ 366 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPS--SVTKIPESAFS-----NCTALNNIEYSG 366 (394)
T ss_dssp EECTTTTTTCTTCCEEEECT--TCCBCCGGGGT-----TCTTCCEEEESS
T ss_pred EehHhHhhCCCCCCEEEECc--ccCEEhHhHhh-----CCCCCCEEEECC
Confidence 443 567778888888853 36666654332 377788777664
No 229
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.76 E-value=0.00075 Score=70.94 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=35.3
Q ss_pred chhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhh-ccCCeEEEEEe
Q 047584 193 RETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ-DHFDLKAWTCV 253 (883)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~ 253 (883)
+....+.+.+++..... .....+.|+|++|+|||+||+.+++. .. ..-..++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 33444555566654311 12367899999999999999999984 33 22234555654
No 230
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0018 Score=70.61 Aligned_cols=178 Identities=15% Similarity=0.174 Sum_probs=92.7
Q ss_pred cceecchhhHHHHHHHHcC----CCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLK----DDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++.|-++.+++|.+.+.- ++. .+-...+-|.++|++|.|||.||+++++ +....| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhhhh--
Confidence 6789999999888766421 110 0223457899999999999999999998 333333 3333322110
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC-----Ch-----hh----HhhhcccccC--CCCC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNE-----NY-----TD----WARLSLPFQA--GAQG 324 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----~~-----~~----~~~l~~~l~~--~~~g 324 (883)
.+.......+...+...-...+++|++|++... +. .. ...+...+.. ...+
T Consensus 254 -------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 254 -------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp -------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred -------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 000001111111111222346899999998320 00 01 1112222221 1234
Q ss_pred cEEEEeCCChhHH-Hhc-CC---CccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCC
Q 047584 325 SKIVVTTRNEEVA-KIM-SL---DQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGL 390 (883)
Q Consensus 325 s~ilvTTR~~~va-~~~-~~---~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl 390 (883)
-.||.||...+.. ..+ .. ...+.++..+.++-.++|..+.-.... ...-+ ...|++.+.|+
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 4566677654322 221 12 246788888888888888765432111 11112 35677788774
No 231
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.76 E-value=0.00078 Score=69.74 Aligned_cols=69 Identities=19% Similarity=0.365 Sum_probs=45.7
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEe--CCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCV--SEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 292 (883)
.+++.|+|++|+|||+||.++... . -..++|+++ .+..+. .. .+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~--G~~VlyIs~~~eE~v~~---------------~~-~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---L--GGKDKYATVRFGEPLSG---------------YN-TDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---H--HTTSCCEEEEBSCSSTT---------------CB-CCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---C--CCCEEEEEecchhhhhh---------------hh-cCHHHHHHHHHHHHh
Confidence 367889999999999999999873 1 123566776 332110 00 345555556666665
Q ss_pred CCcEEEEEeCCCC
Q 047584 293 RKKFLLVLDDVWN 305 (883)
Q Consensus 293 ~kr~LlVlDdv~~ 305 (883)
..+ +||+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 556 999999944
No 232
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.75 E-value=0.0027 Score=67.66 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=83.9
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
..++|++..++.+...+... .-+.++|++|+|||+||+.+.+. .... ...+..+......++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g--- 90 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIG--- 90 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHE---
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCC---
Confidence 35889999999888888653 24889999999999999999873 2222 22344443333333221
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhC-C--CcEEEEEeCCCCCChhhHhhhcccccC-----------CCCCcEEEEeCCC
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLS-R--KKFLLVLDDVWNENYTDWARLSLPFQA-----------GAQGSKIVVTTRN 333 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~-~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~ilvTTR~ 333 (883)
........ ... ... + ...++++|++..........+...+.. ......|+.|+..
T Consensus 91 -~~~~~~~~-~~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 91 -TMIYNQHK-GNF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp -EEEEETTT-TEE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred -ceeecCCC-Cce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 11000000 000 000 0 125899999977665544444333221 1234455556552
Q ss_pred hh------H-HHhcCC-CccEeCCCCCHHhHHHHHHhhhc
Q 047584 334 EE------V-AKIMSL-DQAYELKSLSTEDCLSVLAQHSL 365 (883)
Q Consensus 334 ~~------v-a~~~~~-~~~~~l~~L~~~~~~~Lf~~~a~ 365 (883)
.. + ...... ...+.+...+.++-.+++.....
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 21 1 111111 22478888899888888887654
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.72 E-value=0.0033 Score=71.68 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=77.6
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+++|-+...+.+.+.+.-..-.......++.++|++|+||||||+.++.. ....| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 568898888777755442110001113568999999999999999999873 22222 2233333222221111100
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChh----hHhhhcccccCCC---------------CCcEEE
Q 047584 268 SSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYT----DWARLSLPFQAGA---------------QGSKIV 328 (883)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~il 328 (883)
..++ .........+... ....-+++||++...... ....+...+.... ....+|
T Consensus 156 ~~ig------~~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVG------AMPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhc------cCchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 0000 0011111122222 223448889999765332 1123333332110 234566
Q ss_pred EeCCChh-----HHHhcCCCccEeCCCCCHHhHHHHHHhhh
Q 047584 329 VTTRNEE-----VAKIMSLDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 329 vTTR~~~-----va~~~~~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
.||.... +...+ ..+.+.+++.++-..++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 6665432 22222 467888888888888777653
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.64 E-value=0.0086 Score=59.30 Aligned_cols=85 Identities=21% Similarity=0.112 Sum_probs=52.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhc-----------cCCC-CCCChHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSIT-----------KQTV-DNNDLNF 282 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~-----------~~~~-~~~~~~~ 282 (883)
-.++.|+|.+|+||||||..+.. ..-..++|++....++...+.. +.+... .... ...+...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46999999999999999999987 1224678888776556555443 333221 1111 1112223
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCC
Q 047584 283 LQEELKKQLSRKKFLLVLDDVWN 305 (883)
Q Consensus 283 ~~~~l~~~L~~kr~LlVlDdv~~ 305 (883)
....++..+..+.-+||+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 34444455544577899998743
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.61 E-value=0.012 Score=69.23 Aligned_cols=179 Identities=13% Similarity=0.145 Sum_probs=97.1
Q ss_pred cceecchhhHHHHHHHHc----CCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLL----KDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++.|-++.+++|.+++. .++- -+....+-|.++|++|.|||+||+++++. ...+| +.|+.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH------
Confidence 578899988888877653 2210 12234578999999999999999999984 33332 333321
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh-------hh----HhhhcccccC--CCCCcEE
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY-------TD----WARLSLPFQA--GAQGSKI 327 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-------~~----~~~l~~~l~~--~~~gs~i 327 (883)
++ .. .........+...+.......+.+|+||++...-. +. ...+...+.. ...+-.|
T Consensus 273 ~l----~s-----k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 273 EI----MS-----KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp HH----HS-----SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred Hh----hc-----ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 11 11 11111222333344444466799999999853210 00 1111111111 1123345
Q ss_pred EEeCCCh-hHHHhcC----CCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh
Q 047584 328 VVTTRNE-EVAKIMS----LDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 328 lvTTR~~-~va~~~~----~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 391 (883)
|.||... .+-..+. -...+.+...+.++-.++|..+.-... ...... ...|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCC
Confidence 5566543 3322221 234688888888888888887643221 111122 456778888764
No 236
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0078 Score=64.84 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=92.4
Q ss_pred cceecchhhHHHHHHHHcC----CCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLK----DDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
.++.|-++.+++|.+.+.- ++. .+-...+-|.++|++|.|||.||+++++. ....| +.++.+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhh--
Confidence 6788999888888766532 110 02234578999999999999999999983 33333 2233222110
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh----------hh----Hhhhccccc--CCCCC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY----------TD----WARLSLPFQ--AGAQG 324 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----------~~----~~~l~~~l~--~~~~g 324 (883)
.+-......+...+...-...+++|++|++...-. .. ...+...+. ....+
T Consensus 255 -------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 255 -------------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp -------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred -------------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 00011111111122222235689999999853110 00 111211111 12234
Q ss_pred cEEEEeCCChhH-HHhc-CC---CccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCC
Q 047584 325 SKIVVTTRNEEV-AKIM-SL---DQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGL 390 (883)
Q Consensus 325 s~ilvTTR~~~v-a~~~-~~---~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl 390 (883)
..||.||-..+. -..+ .. ...+.++.-+.++-.++|..+.-... ....-+ ...|++.+.|+
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCC----HHHHHHHCCSC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCC
Confidence 456666655433 2222 12 23577888788888888876653221 111122 35567777775
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.29 E-value=0.0085 Score=72.50 Aligned_cols=136 Identities=15% Similarity=0.233 Sum_probs=72.4
Q ss_pred cceecchhhHHHHHHHHcCCC---CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDD---SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
..++|.+..++.+...+.... .........+.|+|++|+|||++|+.+.+. ....-...+.++++...... ..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~~- 633 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AV- 633 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-GG-
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-HH-
Confidence 357999999988888775421 001122467899999999999999999873 21111123445544332210 00
Q ss_pred HHHHHhccCCC---CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHhhhcccccCCC-----------CCcEEEEe
Q 047584 265 TILSSITKQTV---DNNDLNFLQEELKKQLSRKKFLLVLDDVWNENYTDWARLSLPFQAGA-----------QGSKIVVT 330 (883)
Q Consensus 265 ~il~~l~~~~~---~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 330 (883)
..+.+... +......+...++. ...-+|+||++.....+....+...+..+. .+..||+|
T Consensus 634 ---s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 634 ---SRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp ---GGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred ---HHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 11111100 00111122222222 234689999998776666666655554321 23447777
Q ss_pred CCC
Q 047584 331 TRN 333 (883)
Q Consensus 331 TR~ 333 (883)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 764
No 238
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.28 E-value=0.0048 Score=73.86 Aligned_cols=121 Identities=13% Similarity=0.088 Sum_probs=64.9
Q ss_pred cceecchhhHHHHHHHHcCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (883)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+.+. .. ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 4588999999888877753210 01123457999999999999999999873 22 2234455544321100
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhC-CCcEEEEEeCCCCCChhhHhhhccccc
Q 047584 265 TILSSITKQTVDNNDLNFLQEELKKQLS-RKKFLLVLDDVWNENYTDWARLSLPFQ 319 (883)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~~~~~l~~~l~ 319 (883)
...+.+.... .........+.+.+. ....+|+||++.....+....+...+.
T Consensus 530 --~~~l~g~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 530 --VSRLIGAPPG-YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp --CSSSCCCCSC-SHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred --HhhhcCCCCC-CcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 0011111111 000000011222222 346799999998776665555555443
No 239
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.13 E-value=0.051 Score=59.26 Aligned_cols=239 Identities=10% Similarity=0.111 Sum_probs=121.2
Q ss_pred cCCCceeEEeeCCCC---CCCcC-ccccCCCcccEEeccCCCccccc-cccccCCCccEEecCCCCchhhch-hhhcCcC
Q 047584 598 LKLQRLRVFSLRGYC---IPELP-DSVGDLRYLRYLNLSGTVIRSLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLI 671 (883)
Q Consensus 598 ~~l~~Lr~L~L~~~~---~~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp-~~i~~L~ 671 (883)
.++.+|+.+.+..+. ++.+. ..+..+..|+.+.+..+ ++.++ ..+..+.+|+.+.+.. .+..++ ..+..+.
T Consensus 84 ~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 84 YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCY 160 (394)
T ss_dssp TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred hCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccc--eeeeecccceeccc
Confidence 378888888887653 55553 34677788888777654 55554 3567788888888864 234443 3467778
Q ss_pred CCCceecCCCCCccccCccCCCCCCCCccCceEeCcC-CCCCcccccccccCCCeeEEeccCCCCCccchHh--------
Q 047584 672 KLHHLKNSNTDSLEEMPLGIVRLTCLQTLCNFVVAKD-SGSGLRELKSLTHLERTLKISKLENVKCVGDAME-------- 742 (883)
Q Consensus 672 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~-~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~-------- 742 (883)
+|+.+.+..+ +..+....-...+|..+ ..... .......+.++..+. ......- ..........
T Consensus 161 ~L~~i~~~~~--~~~I~~~aF~~~~l~~i---~ip~~~~~i~~~af~~c~~l~-~~~~~~~-~~~~~~~~~~~~~~~~~~ 233 (394)
T 4gt6_A 161 SLHTVTLPDS--VTAIEERAFTGTALTQI---HIPAKVTRIGTNAFSECFALS-TITSDSE-SYPAIDNVLYEKSANGDY 233 (394)
T ss_dssp TCCEEECCTT--CCEECTTTTTTCCCSEE---EECTTCCEECTTTTTTCTTCC-EEEECCS-SSCBSSSCEEEECTTSCE
T ss_pred ccccccccce--eeEeccccccccceeEE---EECCcccccccchhhhccccc-eeccccc-ccccccceeecccccccc
Confidence 8888877654 34443322222334333 11110 000111122222232 1111100 0000000000
Q ss_pred --hhcCCCCCCCceEEEeccCCCCCCCcchhhHHhhhcCCCCCCCcceEEEEecCCCCCCcCCCcCCCCCeeEEEEecCC
Q 047584 743 --AQMDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDVLKPHANLEQFCIKGYGGMKFPTWLGDSLFSNLVTLKFENCG 820 (883)
Q Consensus 743 --~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~ 820 (883)
........+..+.+-. ......-..+..+.+|+.+.+.... ..+...... .+++|+.+.+..
T Consensus 234 ~~~~~~~~~~~~~~~ip~------------~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~-~c~~L~~i~l~~-- 297 (394)
T 4gt6_A 234 ALIRYPSQREDPAFKIPN------------GVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFM-NCPALQDIEFSS-- 297 (394)
T ss_dssp EEEECCTTCCCSEEECCT------------TEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTT-TCTTCCEEECCT--
T ss_pred cccccccccccceEEcCC------------cceEcccceeeecccccEEeccccc-ceecCcccc-cccccccccCCC--
Confidence 0000111122221100 0000011345667888888775432 233333221 378899999864
Q ss_pred CCCCCC--CCCCcCcccceeccCcccceecCCCccCCCCCCCCCCcceeec
Q 047584 821 ICTALP--SVGQLPSLKHLVVCGMSSVRRLDPEFYGKDASIPFPYLETLRF 869 (883)
Q Consensus 821 ~~~~l~--~l~~lp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~p~L~~L~l 869 (883)
.+..++ .+..+++|+.+.|.. +++.|+..-+. .+.+|+.+.|
T Consensus 298 ~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~-----~C~~L~~i~i 341 (394)
T 4gt6_A 298 RITELPESVFAGCISLKSIDIPE--GITQILDDAFA-----GCEQLERIAI 341 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-----TCTTCCEEEE
T ss_pred cccccCceeecCCCCcCEEEeCC--cccEehHhHhh-----CCCCCCEEEE
Confidence 344555 688899999999964 47788765332 3677777765
No 240
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.12 E-value=0.16 Score=54.91 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=25.4
Q ss_pred CCCceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCccccccccccCCCccEEecC
Q 047584 599 KLQRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLPESVNKLYNLHSLLLE 655 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~ 655 (883)
+|.+|+.++|..+ ++.++. .+.++ .|..+.+.. +++.++.......+|+.+.+.
T Consensus 67 ~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 67 SCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECC
T ss_pred CCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCC
Confidence 5666666666532 444432 23333 455554443 244444333233355555554
No 241
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.10 E-value=0.017 Score=61.38 Aligned_cols=85 Identities=19% Similarity=0.134 Sum_probs=55.8
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCC-----CCCCChHHHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQT-----VDNNDLNFLQEELK 288 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 288 (883)
.-+++.|+|++|+||||||.+++... ...=..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 35799999999999999999998742 2222357888887776654 233333221 12345666666665
Q ss_pred HHhC-CCcEEEEEeCCCC
Q 047584 289 KQLS-RKKFLLVLDDVWN 305 (883)
Q Consensus 289 ~~L~-~kr~LlVlDdv~~ 305 (883)
..+. .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5543 4566899999854
No 242
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.04 E-value=0.0039 Score=61.60 Aligned_cols=112 Identities=11% Similarity=-0.078 Sum_probs=62.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCC--CCCChHHHHHHHHHHhC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTV--DNNDLNFLQEELKKQLS 292 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~L~ 292 (883)
-.++.|+|..|+||||++..+.+. ...+-..++.+.-... .. ....++..++.... .....+++...+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 478999999999999999888773 3333333444433322 11 11223333332111 11233455555555554
Q ss_pred CCcE-EEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCCh
Q 047584 293 RKKF-LLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNE 334 (883)
Q Consensus 293 ~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 334 (883)
+.++ +||+|.+..-+.+..+.+ ..+.+ .|-.||+|.+..
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 4444 999999976543433333 22333 267899998853
No 243
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.98 E-value=0.091 Score=55.95 Aligned_cols=156 Identities=11% Similarity=-0.038 Sum_probs=98.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHH-HhCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKK-QLSR 293 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~L~~ 293 (883)
.++..++|..|.||++.|+.+..... ...|+....+.+....++.++.. .+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~---------------------~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIFS---------------------LCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHHH---------------------HHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHHH---------------------HhcCcCCcc
Confidence 46899999999999999999987422 23453322223333334433332 2221 1245
Q ss_pred CcEEEEEeCCCC-CChhhHhhhcccccCCCCCcEEEEeCCC-------hhHHHh-cCCCccEeCCCCCHHhHHHHHHhhh
Q 047584 294 KKFLLVLDDVWN-ENYTDWARLSLPFQAGAQGSKIVVTTRN-------EEVAKI-MSLDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 294 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTR~-------~~va~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
++-++|+|++.. .....++.+...+.....++.+|++|.. ..+... ......++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677888999876 5456677777666655567777765532 234433 3345688999999999887777665
Q ss_pred cCCCCCCCCccHHHHHHHHHHhcCCChHHHHH
Q 047584 365 LETTDFSSHKSLEEIGKEIVIKCNGLPLAAKT 396 (883)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 396 (883)
-... -.--++.+..|++.++|.+.++..
T Consensus 156 ~~~g----~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 156 KQLN----LELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHTT----CEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHcC----CCCCHHHHHHHHHHhchHHHHHHH
Confidence 3211 111256788899999998887654
No 244
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.85 E-value=0.029 Score=60.02 Aligned_cols=84 Identities=19% Similarity=0.084 Sum_probs=55.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCC-----CCCCChHHHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQT-----VDNNDLNFLQEELKK 289 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~~ 289 (883)
-+++.|+|.+|+||||||.++... ....-..++|++....++... .+.++... ....+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 468999999999999999998864 222234689999887766542 33333211 123456666666666
Q ss_pred HhC-CCcEEEEEeCCCC
Q 047584 290 QLS-RKKFLLVLDDVWN 305 (883)
Q Consensus 290 ~L~-~kr~LlVlDdv~~ 305 (883)
... ...-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 654 3456899999843
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.78 E-value=0.036 Score=60.03 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+.++|++|+|||++|+.+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 246
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.74 E-value=0.02 Score=57.10 Aligned_cols=115 Identities=17% Similarity=0.059 Sum_probs=60.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCC-------------------
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTV------------------- 275 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~------------------- 275 (883)
-.++.|+|++|+|||||++.+..... ..=..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 36899999999999999999986322 1123466666433 3444443332 2221100
Q ss_pred ----CCCChHHHHHHHHHHhC---CCcEEEEEeCCCCC---ChhhHhhhcccccC--CCCCcEEEEeCCCh
Q 047584 276 ----DNNDLNFLQEELKKQLS---RKKFLLVLDDVWNE---NYTDWARLSLPFQA--GAQGSKIVVTTRNE 334 (883)
Q Consensus 276 ----~~~~~~~~~~~l~~~L~---~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~ilvTTR~~ 334 (883)
...+.+++...+.+.+. -+..+||+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11245555555554442 22349999998522 22222232222221 12467788888764
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.66 E-value=0.032 Score=66.66 Aligned_cols=157 Identities=15% Similarity=0.158 Sum_probs=83.4
Q ss_pred cceecchhhHHHHHHHHcC----CC---CCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLK----DD---SRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
..++|.+..+++|.+++.. ++ .-.-.....|.|+|++|+||||||+.++.. ....| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 6799999999999888743 00 001123457999999999999999999873 32222 3333211
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh-------h----hHhhhcccccC--CCCCcEE
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY-------T----DWARLSLPFQA--GAQGSKI 327 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-------~----~~~~l~~~l~~--~~~gs~i 327 (883)
+... ........+...+.......+.++++|++...-. + ....+...+.. ...+..+
T Consensus 274 ---------l~~~-~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 274 ---------IMSK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ---------HSSS-STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred ---------hhhh-hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 1000 0001111222233333345678999999842210 0 01111111111 1123455
Q ss_pred EEeCCCh-hHHHhcC----CCccEeCCCCCHHhHHHHHHhhh
Q 047584 328 VVTTRNE-EVAKIMS----LDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 328 lvTTR~~-~va~~~~----~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
|.||... .+..... -...+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5565543 2222111 12456788888888888887664
No 248
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.65 E-value=0.028 Score=59.45 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=38.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhcc----CCeEEEEEeCCCCCHHHHHHHHHHHh
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDH----FDLKAWTCVSEDFDVKGLTRTILSSI 270 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~il~~l 270 (883)
-.++.|+|.+|+||||||.+++........ -..++|++....++...+.. +++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHh
Confidence 469999999999999999998863211110 24689999888777776653 34444
No 249
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.59 E-value=0.047 Score=56.24 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=54.1
Q ss_pred EEEEEecCCchHHHHHHHHhcchhhhcc--CCeEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCChHHH-HHHHH
Q 047584 217 VIPIIGMGGLGKTTLAQLVYNDKRVQDH--FDLKAWTCVSEDFDVKGLTRTILSSITKQTV-----DNNDLNFL-QEELK 288 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~-~~~l~ 288 (883)
++-|.|++|+||||||.+++.. .... =..++||+..+.++... ++.++.... .+.+.+++ ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999998863 3333 24689999888877642 455543321 23455555 33333
Q ss_pred HH--h-CCCcEEEEEeCCCC
Q 047584 289 KQ--L-SRKKFLLVLDDVWN 305 (883)
Q Consensus 289 ~~--L-~~kr~LlVlDdv~~ 305 (883)
.. + .++.-+||+|-+..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 22 3 35688999999854
No 250
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.58 E-value=0.012 Score=57.38 Aligned_cols=43 Identities=26% Similarity=0.259 Sum_probs=33.8
Q ss_pred cchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhc
Q 047584 192 GRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.|++.++.|.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667788888887542 23458999999999999999999886
No 251
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.58 E-value=0.071 Score=59.41 Aligned_cols=175 Identities=13% Similarity=0.144 Sum_probs=90.5
Q ss_pred cceecchhhHHHHHHHHc---CCCC---CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHH
Q 047584 188 AKVYGRETEKKEIVELLL---KDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKG 261 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (883)
.+++|.+..+.++.+... .... -+..-.+-+.|+|++|+||||||+.++.. ... ..+.++.+.-.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHHH---
Confidence 568899887776655442 2110 00111233899999999999999999973 221 233344322110
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhCC----CcEEEEEeCCCCCC----------hhhH----hhhcccccCC--
Q 047584 262 LTRTILSSITKQTVDNNDLNFLQEELKKQLSR----KKFLLVLDDVWNEN----------YTDW----ARLSLPFQAG-- 321 (883)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~----kr~LlVlDdv~~~~----------~~~~----~~l~~~l~~~-- 321 (883)
.-.......++..++. .+.++++|++.... ...+ ..+...+...
T Consensus 103 ----------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 103 ----------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp ----------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred ----------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 0011122233333432 35799999994321 1111 2222222221
Q ss_pred CCCcEEEEeCCChhHHH-h-c---CCCccEeCCCCCHHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHhcCCCh
Q 047584 322 AQGSKIVVTTRNEEVAK-I-M---SLDQAYELKSLSTEDCLSVLAQHSLETTDFSSHKSLEEIGKEIVIKCNGLP 391 (883)
Q Consensus 322 ~~gs~ilvTTR~~~va~-~-~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 391 (883)
..+..|+.||...++.. . . .....+.+...+.++-.+++..++-.. ...... ....|+..+.|..
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv----~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDV----DLALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSS----TTHHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHH----HHHHHHHhcCCCC
Confidence 23445666666655422 1 1 123467888888888888887664221 111111 1345677777765
No 252
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.55 E-value=0.043 Score=58.37 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=37.6
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhc----cCCeEEEEEeCCCCCHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQD----HFDLKAWTCVSEDFDVKGLTR 264 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~ 264 (883)
.-.++.|+|.+|+||||||.+++....... .-..++|++....++...+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 457999999999999999999886321111 224688999888777766543
No 253
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.54 E-value=0.02 Score=57.56 Aligned_cols=89 Identities=10% Similarity=0.047 Sum_probs=51.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhc----cCCeEEEEEeCCCCCHHHHHHHHHHHhccCC---------CCCCChH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQD----HFDLKAWTCVSEDFDVKGLTRTILSSITKQT---------VDNNDLN 281 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~---------~~~~~~~ 281 (883)
-.++.|+|++|+|||||++.+........ .-..++|++....++...+. .+.+.++... ....+.+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46999999999999999999886311111 13568888877755554443 3333333211 0112223
Q ss_pred HH---HHHHHHHhC-CCcEEEEEeCCC
Q 047584 282 FL---QEELKKQLS-RKKFLLVLDDVW 304 (883)
Q Consensus 282 ~~---~~~l~~~L~-~kr~LlVlDdv~ 304 (883)
+. ...+.+.+. .+.-+||+|.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22 223444443 467788899874
No 254
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.47 E-value=0.042 Score=58.44 Aligned_cols=84 Identities=20% Similarity=0.127 Sum_probs=54.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCC-----CCCCChHHHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQT-----VDNNDLNFLQEELKK 289 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~~ 289 (883)
-+++.|+|.+|+||||||.++... ....=..++|++....++.. ..+.++... ....+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 479999999999999999999863 22222468899988776653 133333211 123455666555555
Q ss_pred HhC-CCcEEEEEeCCCC
Q 047584 290 QLS-RKKFLLVLDDVWN 305 (883)
Q Consensus 290 ~L~-~kr~LlVlDdv~~ 305 (883)
... .+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 553 3567999999844
No 255
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.45 E-value=0.037 Score=57.46 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=45.9
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCC-CCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhC
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSE-DFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~ 292 (883)
...+++|+|.+|+||||++..+........- ..+..+.... .....+-+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 3579999999999999999999863322111 2345554432 1222223333332222221112334445444543 3
Q ss_pred CCcEEEEEeCC
Q 047584 293 RKKFLLVLDDV 303 (883)
Q Consensus 293 ~kr~LlVlDdv 303 (883)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 44557888843
No 256
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.33 E-value=0.017 Score=60.12 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.1
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999983
No 257
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.20 E-value=0.046 Score=58.24 Aligned_cols=84 Identities=18% Similarity=0.056 Sum_probs=53.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCC-----CCCCChHHHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQT-----VDNNDLNFLQEELKK 289 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~~ 289 (883)
-+++.|+|.+|+||||||.++... ....=..++|++....++... +..++... ....+.+++...+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 479999999999999999998864 222224688999887776442 23333211 122345555555544
Q ss_pred HhC-CCcEEEEEeCCCC
Q 047584 290 QLS-RKKFLLVLDDVWN 305 (883)
Q Consensus 290 ~L~-~kr~LlVlDdv~~ 305 (883)
... .+.-+||+|.+..
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 432 4456899998843
No 258
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.14 E-value=0.03 Score=59.19 Aligned_cols=89 Identities=12% Similarity=0.175 Sum_probs=53.5
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhc---------cC-----CeEEEEEeCCCCCHHHHHHHHHHHhccCC-----
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQD---------HF-----DLKAWTCVSEDFDVKGLTRTILSSITKQT----- 274 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~s~~~~~~~~~~~il~~l~~~~----- 274 (883)
.-.++.|+|.+|+|||+||.+++....... .. ..++|++....++..++... ++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 347999999999999999999886321111 11 36889998888777766543 34443211
Q ss_pred ----CCCCChHH---HHHHHHHHhC--CCcEEEEEeCC
Q 047584 275 ----VDNNDLNF---LQEELKKQLS--RKKFLLVLDDV 303 (883)
Q Consensus 275 ----~~~~~~~~---~~~~l~~~L~--~kr~LlVlDdv 303 (883)
....+.++ +...+.+.+. .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 11122222 3333444443 34567788877
No 259
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.03 E-value=0.083 Score=54.15 Aligned_cols=155 Identities=17% Similarity=0.103 Sum_probs=75.9
Q ss_pred cceecchhhHHHHHHHHcCCCC-------CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC--
Q 047584 188 AKVYGRETEKKEIVELLLKDDS-------RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD-- 258 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-- 258 (883)
.++.|-++.++.|.+.+..+-. -+-...+-+.|+|++|+||||||+.++... .. ..+++....-.+
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~--~~---~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES--GL---NFISVKGPELLNMY 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT--TC---EEEEEETTTTCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc--CC---CEEEEEcHHHHhhh
Confidence 4566777777766654421000 000011229999999999999999998732 21 234444322111
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh-----------hhHhhhcccccCC--CCCc
Q 047584 259 VKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWNENY-----------TDWARLSLPFQAG--AQGS 325 (883)
Q Consensus 259 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs 325 (883)
..+.. ..+.......-...+.++++|++..... .....+...+..+ ....
T Consensus 85 ~~~~~-----------------~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 85 VGESE-----------------RAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp THHHH-----------------HHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred hhHHH-----------------HHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 00000 0111111111134578999999854210 0011111122211 1233
Q ss_pred EEEEeCCChhHHH-h-c---CCCccEeCCCCCHHhHHHHHHhhh
Q 047584 326 KIVVTTRNEEVAK-I-M---SLDQAYELKSLSTEDCLSVLAQHS 364 (883)
Q Consensus 326 ~ilvTTR~~~va~-~-~---~~~~~~~l~~L~~~~~~~Lf~~~a 364 (883)
-++.+|...++.. . . .-...+.++..+.++-.++|....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 4555666544322 1 1 223567888888888888887654
No 260
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.02 E-value=0.058 Score=56.16 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=27.4
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCC-eEEEEEeC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVS 254 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s 254 (883)
-.+++|+|.+|+|||||++.++..... .-. .++|+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCc
Confidence 368999999999999999999874322 212 45666543
No 261
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.79 E-value=0.017 Score=55.17 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=59.5
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC---CCHHHHHHHHHHHhc------cCC--CCCCC-----
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED---FDVKGLTRTILSSIT------KQT--VDNND----- 279 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~il~~l~------~~~--~~~~~----- 279 (883)
..|-|++..|.||||+|-...- +..++=-.+.++..... .....++ +.+. +.. +...+
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHHH
Confidence 4566777777999999987765 34344334555543332 2222333 3331 000 01111
Q ss_pred --hHHHHHHHHHHhCCC-cEEEEEeCCCCC---ChhhHhhhcccccCCCCCcEEEEeCCCh
Q 047584 280 --LNFLQEELKKQLSRK-KFLLVLDDVWNE---NYTDWARLSLPFQAGAQGSKIVVTTRNE 334 (883)
Q Consensus 280 --~~~~~~~l~~~L~~k-r~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 334 (883)
........++.+.+. -=|||||++-.. .....+.+...+........||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 112233455566554 459999998221 1122344444455555667899999984
No 262
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.76 E-value=0.12 Score=53.41 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=44.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhhc-cCCeEEEEEeCCCCCHHHHHHHHHHHh------cc-CCCCCCChHHHH
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQD-HFDLKAWTCVSEDFDVKGLTRTILSSI------TK-QTVDNNDLNFLQ 284 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~s~~~~~~~~~~~il~~l------~~-~~~~~~~~~~~~ 284 (883)
....+|+|+|..|+||||||+.+........ .......|+....+-.......+.... .. ......+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 3568999999999999999999886432211 123344445544332333333332221 10 013345566666
Q ss_pred HHHHHHhCC
Q 047584 285 EELKKQLSR 293 (883)
Q Consensus 285 ~~l~~~L~~ 293 (883)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666655444
No 263
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.76 E-value=0.49 Score=50.89 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=50.0
Q ss_pred CCCceeEEeeCCCCCCCcCc-cccCCCcccEEeccCCCcccccc-ccccCCCccEEecCCCCchhhchhhhcCcCCCCce
Q 047584 599 KLQRLRVFSLRGYCIPELPD-SVGDLRYLRYLNLSGTVIRSLPE-SVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHL 676 (883)
Q Consensus 599 ~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L 676 (883)
...+|+.+.+.. .++.+++ .+.+|.+|+.+.|..+ ++.++. .+.++ +|+.+.+.. .+..++...-...+|+.+
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~i 118 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDDF 118 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSEE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceeccCCcccc
Confidence 345566666653 3556643 5788999999999764 777764 45555 677777754 355555443333478888
Q ss_pred ecCCC
Q 047584 677 KNSNT 681 (883)
Q Consensus 677 ~l~~~ 681 (883)
.+..+
T Consensus 119 ~lp~~ 123 (379)
T 4h09_A 119 EFPGA 123 (379)
T ss_dssp ECCTT
T ss_pred cCCCc
Confidence 77643
No 264
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.75 E-value=0.022 Score=55.81 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=28.9
Q ss_pred hHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 196 EKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
-.++|.+.+... .....+|+|+|+.|+|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345566665432 124579999999999999999999863
No 265
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.69 E-value=0.22 Score=49.37 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=21.0
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+++|+|+.|+|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 266
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.65 E-value=0.045 Score=48.90 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=39.4
Q ss_pred eEEeeCCCCCC--CcCccccCCCcccEEeccCCCccccccc-cccCCCccEEecCCC
Q 047584 604 RVFSLRGYCIP--ELPDSVGDLRYLRYLNLSGTVIRSLPES-VNKLYNLHSLLLEDC 657 (883)
Q Consensus 604 r~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~c 657 (883)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|++|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 36778888887 7876543 4688888888888888764 567888888888875
No 267
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.55 E-value=0.083 Score=55.19 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=53.0
Q ss_pred eecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccC--CeEEEEEeCCCCCHHHHHHHHH
Q 047584 190 VYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF--DLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~il 267 (883)
.+|-...+..+...+.... ......+|+|.|+.|+||||||+.+..- ..... ..+..++....+-....+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~l--l~~~~~~~~v~~i~~D~f~~~~~~l~~-- 142 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKAL--LSRWPDHPNVEVITTDGFLYSNAKLEK-- 142 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHHH--HTTSTTCCCEEEEEGGGGBCCHHHHHH--
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHHH--hcccCCCCeEEEEeecccccchhhhhh--
Confidence 3455555555655555442 2345679999999999999999998752 21111 12444554332221211111
Q ss_pred HHhc--cCCCCCCChHHHHHHHHHHhCCC
Q 047584 268 SSIT--KQTVDNNDLNFLQEELKKQLSRK 294 (883)
Q Consensus 268 ~~l~--~~~~~~~~~~~~~~~l~~~L~~k 294 (883)
..+. .......+.+.+...+.....++
T Consensus 143 ~~~~~~~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 143 QGLMKRKGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp TTCGGGTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred HHHHhhccCcccccHHHHHHHHHhhhccc
Confidence 0110 11123456666777776666665
No 268
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.48 E-value=0.016 Score=54.79 Aligned_cols=20 Identities=50% Similarity=0.747 Sum_probs=18.8
Q ss_pred eEEEEEecCCchHHHHHHHH
Q 047584 216 AVIPIIGMGGLGKTTLAQLV 235 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v 235 (883)
.+|.|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 269
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.48 E-value=0.022 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999863
No 270
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.45 E-value=0.12 Score=54.33 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=37.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSI 270 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (883)
-.++.|.|.+|+||||||..++..... +=..++|++. ..+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 368999999999999999999874322 2235667765 345777777776554
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.44 E-value=0.21 Score=51.88 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCCCC--CCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH--HHHHHHHHHhcc
Q 047584 197 KKEIVELLLKDDSR--NDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK--GLTRTILSSITK 272 (883)
Q Consensus 197 ~~~l~~~L~~~~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~il~~l~~ 272 (883)
.+.|.+.|.....- ......++.|+|.+|+||||++..++.... ..-..+.++... .+... +-+...++..+.
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl 160 (306)
T 1vma_A 84 KEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAAD-TFRAAAIEQLKIWGERVGA 160 (306)
T ss_dssp HHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccc-cccHHHHHHHHHHHHHcCC
Confidence 45555555432110 123468999999999999999999987432 222234455432 33322 112233333322
Q ss_pred CC---CCCCChHHH-HHHHHHHhCCCcEEEEEeCCC
Q 047584 273 QT---VDNNDLNFL-QEELKKQLSRKKFLLVLDDVW 304 (883)
Q Consensus 273 ~~---~~~~~~~~~-~~~l~~~L~~kr~LlVlDdv~ 304 (883)
.. ....+...+ ...+...+..+.-++|+|-.-
T Consensus 161 ~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 161 TVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred cEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11 111233222 334555454555578888664
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.42 E-value=0.017 Score=54.93 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=20.5
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 273
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.42 E-value=0.22 Score=52.18 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=37.4
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSS 269 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~ 269 (883)
-.++.|.|.+|+||||||..++.+...++ ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 46899999999999999999886432222 567888765 4567777766654
No 274
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.38 E-value=0.036 Score=57.35 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhc
Q 047584 197 KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.++++..++.... ......+|.|+|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444444322 233468999999999999999999975
No 275
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.35 E-value=0.018 Score=54.33 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=20.2
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 276
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.28 E-value=0.027 Score=62.92 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=35.7
Q ss_pred ceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 189 KVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.++|++..++.+...+... .-|.|+|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4789999998888887654 35889999999999999999974
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.24 E-value=0.022 Score=54.27 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.5
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 278
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.19 E-value=0.082 Score=55.91 Aligned_cols=96 Identities=20% Similarity=0.188 Sum_probs=52.9
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCC-eEEEEEeCCCCCHHHHHHHHHHHhcc----C
Q 047584 199 EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD-LKAWTCVSEDFDVKGLTRTILSSITK----Q 273 (883)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~il~~l~~----~ 273 (883)
++++.+..-. .-..++|+|.+|+|||||++.+.+... +.+=+ .++++-+++.. +++ .++.+.+.. .
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~-~~~~~v~~I~~lIGER~--~Ev-~~~~~~~~~~vV~a 233 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIA-YNHPDCVLMVLLIDERP--EEV-TEMQRLVKGEVVAS 233 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHH-HHCTTSEEEEEEESSCH--HHH-HHHHTTCSSEEEEE
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHh-hcCCCeeEEEEEecCCh--HHH-HHHHHHhCeEEEEe
Confidence 5666665432 246899999999999999999887321 11222 24457777653 222 223333311 1
Q ss_pred CCCCCChHHHH-----HHHHHHh--CCCcEEEEEeCC
Q 047584 274 TVDNNDLNFLQ-----EELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 274 ~~~~~~~~~~~-----~~l~~~L--~~kr~LlVlDdv 303 (883)
..+........ -.+.+++ +++.+||++||+
T Consensus 234 tadep~~~r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 234 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 11111111111 1122333 589999999998
No 279
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.17 E-value=0.31 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...||.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.15 E-value=0.022 Score=55.40 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 281
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.10 E-value=0.037 Score=56.13 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=29.4
Q ss_pred hHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhc
Q 047584 196 EKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..++++..+..... ......+|.|+|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445555554432 334568999999999999999999976
No 282
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.04 E-value=0.094 Score=55.85 Aligned_cols=48 Identities=21% Similarity=0.217 Sum_probs=32.9
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccC----CeEEEEEeCCCCCHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHF----DLKAWTCVSEDFDVKG 261 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~s~~~~~~~ 261 (883)
.-.++.|+|++|+|||||++.++......... ..++|++....+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 35899999999999999999998632111111 2348888766554443
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.97 E-value=0.026 Score=53.93 Aligned_cols=23 Identities=13% Similarity=0.408 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 284
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.95 E-value=0.0062 Score=58.44 Aligned_cols=107 Identities=14% Similarity=-0.010 Sum_probs=50.7
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhcc--CCCCCCChHHHHHHHHHHhCC
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITK--QTVDNNDLNFLQEELKKQLSR 293 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~--~~~~~~~~~~~~~~l~~~L~~ 293 (883)
.++.|+|+.|+||||++..+.......+ . .++++..... .+.-...+...++. ......+..+ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~~----~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPEE----MRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEEESSGGG----GGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeeccc--cccCcccEEecCCCceeeEEECCHHH----HHHHhcC
Confidence 5889999999999999966665322221 2 2333322211 00000000000000 0000111222 2223334
Q ss_pred CcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCC
Q 047584 294 KKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRN 333 (883)
Q Consensus 294 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 333 (883)
+.-+|++|.+...+.+ |......+.+. |..|++|.+.
T Consensus 76 ~~dvviIDE~Q~~~~~-~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS-LFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSCTT-HHHHHHHHHHT--TCEEEEEEES
T ss_pred CCCEEEEECcccCCHH-HHHHHHHHHHC--CCCEEEEeec
Confidence 5669999999765433 44443333332 6778888774
No 285
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.95 E-value=0.03 Score=54.42 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+|+|+|+.|+||||||+.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999999873
No 286
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.89 E-value=0.022 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.4
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.84 E-value=0.033 Score=53.69 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|+|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999986
No 288
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.83 E-value=0.13 Score=55.57 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=36.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhh----hccCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRV----QDHFDLKAWTCVSEDFDVKGLTRTILSSIT 271 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 271 (883)
-.++.|+|.+|+|||||+..++-.... ...-..++|++....++...+. .+.+.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 479999999999999999976532111 1123468888877766655443 3444443
No 289
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.82 E-value=0.24 Score=54.16 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=49.8
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC-HHHHHHHHHHH--hccC----CCCCCChH--H----
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD-VKGLTRTILSS--ITKQ----TVDNNDLN--F---- 282 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~il~~--l~~~----~~~~~~~~--~---- 282 (883)
..++|+|.+|+|||||++.+...... ..-+..+++-+++..+ ..++..++... +... ....+... .
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999875322 2224567777776542 33444444322 0000 00111111 1
Q ss_pred HHHHHHHHh---CCCcEEEEEeCC
Q 047584 283 LQEELKKQL---SRKKFLLVLDDV 303 (883)
Q Consensus 283 ~~~~l~~~L---~~kr~LlVlDdv 303 (883)
..-.+.+++ +++..||++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 011233433 588999999999
No 290
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.78 E-value=0.027 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 291
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.72 E-value=0.21 Score=54.61 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=62.0
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC-HHHHHHHHHHHhccC----
Q 047584 199 EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD-VKGLTRTILSSITKQ---- 273 (883)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~il~~l~~~---- 273 (883)
+.++.|..-. +-.-++|+|.+|+|||+|+.++.+.. .+.+-+.++++-+++... ..++.+++.+.=...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 4566665432 23568999999999999999998742 233457888998887753 556666665431110
Q ss_pred ----C----CCCCC-------hHHHHHHHHHHhC---CCcEEEEEeCC
Q 047584 274 ----T----VDNND-------LNFLQEELKKQLS---RKKFLLVLDDV 303 (883)
Q Consensus 274 ----~----~~~~~-------~~~~~~~l~~~L~---~kr~LlVlDdv 303 (883)
. ...++ .....-.+.+++. ++.+||++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 0 01111 1122334556664 57999999998
No 292
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.69 E-value=0.36 Score=52.81 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCC---CCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 197 KKEIVELLLKDDS---RNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 197 ~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+++.++|..... ......++|.|+|.+|+||||++..+...
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556666643211 01234689999999999999999998864
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.69 E-value=0.033 Score=53.68 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 294
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.67 E-value=0.041 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999876
No 295
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.58 E-value=0.034 Score=54.08 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|+|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 296
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.56 E-value=0.049 Score=58.61 Aligned_cols=50 Identities=32% Similarity=0.348 Sum_probs=36.0
Q ss_pred ceecchhhHHHHHHHHcC-------CC--CCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 189 KVYGRETEKKEIVELLLK-------DD--SRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~-------~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.++|.+..++.+...+.. .. .......+.+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 478999989888887721 00 001112456899999999999999999873
No 297
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.53 E-value=0.029 Score=54.61 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+|.|+|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
No 298
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.52 E-value=0.035 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=20.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 47899999999999999997553
No 299
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.48 E-value=0.055 Score=57.61 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=61.6
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
.+++|+|+.|+|||||.+.+..- +.......+ +.+....... .... .....+.....+.......|...|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~--~~~~-~~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV--HESK-KCLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC--CCCS-SSEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh--hhcc-ccceeeeeeccccCCHHHHHHHHhhhCc
Confidence 59999999999999999999763 222222222 2222211100 0000 0000000001111234457888998899
Q ss_pred EEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHHH
Q 047584 296 FLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAK 338 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 338 (883)
=+|++|..-+ .+.+..+.... ..|..||+||...+.+.
T Consensus 198 dvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 198 DIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp SEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred CEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 9999999964 35555443332 23666888888765543
No 300
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.45 E-value=0.039 Score=54.09 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999863
No 301
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.41 E-value=0.039 Score=53.75 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 6899999999999999999986
No 302
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.39 E-value=0.04 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.2
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999974
No 303
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.35 E-value=0.048 Score=53.32 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=21.7
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 304
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.32 E-value=0.036 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 305
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.26 E-value=0.047 Score=53.52 Aligned_cols=24 Identities=46% Similarity=0.346 Sum_probs=21.7
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999986
No 306
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.25 E-value=0.04 Score=55.85 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=20.4
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
++|.|+|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5799999999999999999986
No 307
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.24 E-value=0.047 Score=53.05 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=22.0
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999986
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.20 E-value=0.036 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999986
No 309
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.19 E-value=0.043 Score=52.51 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|+|++|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 310
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.19 E-value=0.044 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|+|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 311
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.15 E-value=0.075 Score=55.88 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=31.7
Q ss_pred ecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 191 YGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
|+-+.-.+++++.+...- ..+....|.|+|++|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 344555666666664221 1224567999999999999999999873
No 312
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.14 E-value=0.033 Score=52.76 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.1
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
++|.|+|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 313
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.14 E-value=0.052 Score=52.81 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.7
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...+|+|.|++|+||||+|+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999885
No 314
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.14 E-value=0.046 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999763
No 315
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.13 E-value=0.037 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.++|.|+|++|+|||||++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 316
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.13 E-value=0.048 Score=53.52 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcc
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...+||.|.|++|+||||.|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999998863
No 317
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.13 E-value=0.49 Score=51.49 Aligned_cols=25 Identities=32% Similarity=0.246 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..++|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998864
No 318
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.11 E-value=0.035 Score=53.24 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.4
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 319
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.07 E-value=0.046 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 320
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.05 E-value=0.046 Score=51.93 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 321
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.04 E-value=0.33 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..++.|+|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999863
No 322
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.00 E-value=0.043 Score=53.36 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
No 323
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.00 E-value=0.044 Score=51.51 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|.|++|+||||+|+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999986
No 324
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.99 E-value=0.049 Score=55.20 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 325
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.99 E-value=0.046 Score=53.26 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.0
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999875
No 326
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.91 E-value=0.052 Score=53.00 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.2
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 327
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.89 E-value=0.051 Score=55.32 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 328
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.89 E-value=0.064 Score=51.54 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999976
No 329
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.88 E-value=0.061 Score=51.48 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...+|.|+|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 330
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.83 E-value=0.047 Score=54.19 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=20.4
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 331
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.81 E-value=0.037 Score=52.91 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.0
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 332
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.80 E-value=0.042 Score=53.33 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.5
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999976
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.75 E-value=0.056 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|+|++|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.75 E-value=0.059 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|+|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 335
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.75 E-value=0.35 Score=50.72 Aligned_cols=25 Identities=36% Similarity=0.318 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...+++|+|+.|+||||+++.+..-
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3589999999999999999999863
No 336
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.72 E-value=0.052 Score=52.56 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.68 E-value=0.058 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.2
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 338
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.68 E-value=0.055 Score=54.57 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 339
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.67 E-value=0.061 Score=56.75 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=35.3
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCe-EEEEEeCCC
Q 047584 198 KEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDL-KAWTCVSED 256 (883)
Q Consensus 198 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~ 256 (883)
-++++.+..-. +-.-++|+|.+|+|||+|++++.+.... .+=+. ++++-+++.
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSCC
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEeccC
Confidence 46778776432 3457899999999999999999874221 12232 356666654
No 340
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.66 E-value=0.059 Score=56.33 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=27.5
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeC
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVS 254 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 254 (883)
+.+||+|+|-|||||||.+-.+... ....=..+.-|.+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 5699999999999999999877653 22222235556655
No 341
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.65 E-value=0.33 Score=53.41 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=30.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD 258 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 258 (883)
....+++|+|..|+|||||++.+..-.. .-...+++.....+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccc
Confidence 3468999999999999999999986322 123455555444444
No 342
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.63 E-value=0.056 Score=50.57 Aligned_cols=25 Identities=28% Similarity=0.330 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999999873
No 343
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.63 E-value=0.46 Score=51.82 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=44.7
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCC-CHHHHHHHHHHH
Q 047584 199 EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDF-DVKGLTRTILSS 269 (883)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~ 269 (883)
+.++.|..-. +-.-++|+|.+|+|||+|+.++.+.. .+.+-+.++++-+.+.. .+.++.+++.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 5667775431 23679999999999999999998742 22344667888888764 345566666543
No 344
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.58 E-value=0.15 Score=58.25 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=53.9
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhC---
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLS--- 292 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~--- 292 (883)
+++.|.|.+|.||||++..+..... .. ...+.+...... ....+.+.++.. ..+ +.+.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~--~~-g~~Vl~~ApT~~----Aa~~L~e~~~~~---a~T-------ih~ll~~~~ 267 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAE--SL-GLEVGLCAPTGK----AARRLGEVTGRT---AST-------VHRLLGYGP 267 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH--HT-TCCEEEEESSHH----HHHHHHHHHTSC---EEE-------HHHHTTEET
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--hc-CCeEEEecCcHH----HHHHhHhhhccc---HHH-------HHHHHcCCc
Confidence 6899999999999999999886322 21 233444433221 112222222111 011 111110
Q ss_pred ----------CCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeC
Q 047584 293 ----------RKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTT 331 (883)
Q Consensus 293 ----------~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT 331 (883)
.+.=+||+|.+...+...+..+...++ .+.++|+.-
T Consensus 268 ~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 268 QGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp TEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred chhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 123489999998887777777766654 466777654
No 345
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.58 E-value=0.11 Score=46.28 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=44.2
Q ss_pred cEEeccCCCcc--ccccccccCCCccEEecCCCCchhhchhh-hcCcCCCCceecCCCC
Q 047584 627 RYLNLSGTVIR--SLPESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLKNSNTD 682 (883)
Q Consensus 627 ~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~ 682 (883)
..++.+++.++ .+|..+. .+|++|+|++ |.+..+|.. +..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 47888999998 8987543 4799999999 678888765 6889999999999986
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.57 E-value=0.045 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.2
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999986
No 347
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.54 E-value=0.061 Score=51.74 Aligned_cols=24 Identities=21% Similarity=0.564 Sum_probs=21.6
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 347899999999999999999985
No 348
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.42 E-value=0.36 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999999874
No 349
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.42 E-value=0.069 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=22.0
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...+|+|+|+.|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 458999999999999999999986
No 350
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.39 E-value=0.042 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=16.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 351
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.37 E-value=0.71 Score=51.31 Aligned_cols=42 Identities=31% Similarity=0.334 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCCCC---CCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 197 KKEIVELLLKDDSR---NDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 197 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.++|.+.+...... .....++|+|+|.+|+||||++..+...
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555666432211 1135689999999999999999999863
No 352
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.37 E-value=0.11 Score=50.97 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 353
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.33 E-value=0.074 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|+|+|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999876
No 354
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.33 E-value=0.067 Score=52.29 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 355
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.31 E-value=0.2 Score=55.68 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+.+.|.|.+|.||||++..+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH
Confidence 38999999999999999998874
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.30 E-value=0.062 Score=50.36 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 357
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.29 E-value=0.1 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...+|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3588999999999999999999874
No 358
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.27 E-value=0.31 Score=50.35 Aligned_cols=90 Identities=14% Similarity=0.025 Sum_probs=46.7
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC-CCHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED-FDVKGLTRTILSSITKQT---VDNNDLNFLQEELKKQ 290 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~ 290 (883)
..++.++|.+|+||||++..++... ...=..+.++..... ....+.+....+..+..- ....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5799999999999999999988632 222224555554322 122222333333332211 1123444443333333
Q ss_pred hC-CCcEEEEEeCCCCC
Q 047584 291 LS-RKKFLLVLDDVWNE 306 (883)
Q Consensus 291 L~-~kr~LlVlDdv~~~ 306 (883)
++ +.-=++|+|-.-..
T Consensus 176 ~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHTTCSEEEEECCCSC
T ss_pred HHhCCCCEEEEeCCCCc
Confidence 43 33337788875443
No 359
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.22 E-value=0.19 Score=48.42 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 360
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.21 E-value=0.069 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.20 E-value=0.067 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 362
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.19 E-value=0.4 Score=53.11 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=34.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTIL 267 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (883)
-.++.|.|.+|+||||||..++...... .=..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 3689999999999999999998743222 112577777543 4556665554
No 363
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.18 E-value=0.085 Score=48.91 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|+|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999999986
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.17 E-value=0.065 Score=51.56 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 365
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.17 E-value=0.072 Score=51.25 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999876
No 366
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.15 E-value=0.055 Score=51.61 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=19.5
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
|.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998875
No 367
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.12 E-value=0.078 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 368
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.10 E-value=0.2 Score=49.58 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=30.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhh---hc-cCCeEEEEEeCCCCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRV---QD-HFDLKAWTCVSEDFD 258 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~s~~~~ 258 (883)
-.+++|+|+.|+|||||++.++..... .. .-...+|+.-...+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 479999999999999999999752111 11 124577877654433
No 369
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.08 E-value=0.062 Score=53.04 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.05 E-value=0.075 Score=53.76 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999985
No 371
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.03 E-value=0.046 Score=53.64 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+|+|+|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999863
No 372
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.03 E-value=0.071 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 373
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.02 E-value=0.059 Score=57.55 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=33.0
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..++|.+..++.+...+.... ..-+.|+|++|+|||+||+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 568999887666544443221 123889999999999999999873
No 374
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.01 E-value=0.08 Score=55.06 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.1
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...+++|+|+.|+|||||++.++.-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999999999999863
No 375
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.92 E-value=0.093 Score=54.04 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=21.1
Q ss_pred CceEEEEEecCCchHHHHHHHHh
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVY 236 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~ 236 (883)
...+|+|+|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999987
No 376
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.92 E-value=0.37 Score=50.35 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..++|.|+|.+|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3589999999999999999998863
No 377
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.89 E-value=0.08 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|+|||||++.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 47999999999999999999986
No 378
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.84 E-value=0.11 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|.|.|++|+||||+|+.+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999975
No 379
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.76 E-value=0.17 Score=53.42 Aligned_cols=106 Identities=13% Similarity=0.047 Sum_probs=56.7
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKK 295 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr 295 (883)
.+++|+|+.|+|||||++.+..-.. .-...+.+.-......... + ..+.-- .+ ........+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~-~---~~i~~~-~g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHH-K---NYTQLF-FG--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSC-S---SEEEEE-CB--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccc-h---hEEEEE-eC--CChhHHHHHHHHhhhCC
Confidence 5799999999999999999986321 1234555542221110000 0 000000 00 11223456777788888
Q ss_pred EEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhH
Q 047584 296 FLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEV 336 (883)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v 336 (883)
=+|++|..-+. +.++.+. .+..+ +.-+|+||.....
T Consensus 242 ~ilildE~~~~--e~~~~l~-~~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 242 DRIILGELRSS--EAYDFYN-VLCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp SEEEECCCCST--HHHHHHH-HHHTT--CCCEEEEEECSSH
T ss_pred CEEEEcCCChH--HHHHHHH-HHhcC--CCEEEEEEcccHH
Confidence 89999998653 4444333 33222 2226666655443
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.76 E-value=0.073 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 381
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.74 E-value=0.068 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 382
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.71 E-value=0.086 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.9
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+|+|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999863
No 383
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.62 E-value=0.12 Score=49.56 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 197 KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+..+..++... ++...+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666432 23457999999999999999998873
No 384
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.59 E-value=0.083 Score=51.93 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 385
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.56 E-value=0.097 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..+|.|+|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999873
No 386
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.55 E-value=0.093 Score=56.40 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=58.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEE-EEEeCCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKA-WTCVSEDFDVKGLTRTILSSITKQTVDNNDLNFLQEELKKQLSR 293 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~ 293 (883)
..+++|+|+.|+|||||++.+..- +.......+ ++...-.+.... .+ .+-.+..-..+...+...++..|..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~~e~~~~~---~~--~~v~Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKH---KK--SIVNQREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESSCCSCCCC---SS--SEEEEEEBTTTBSCSHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecccHhhhhcc---Cc--eEEEeeecCCCHHHHHHHHHHHhhh
Confidence 478999999999999999999873 222212333 332111100000 00 0000000000112234567778877
Q ss_pred CcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHH
Q 047584 294 KKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVA 337 (883)
Q Consensus 294 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va 337 (883)
.+=+|++|.+.+. +......... ..|..|+.|+...++.
T Consensus 209 ~pd~illdE~~d~--e~~~~~l~~~---~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 209 DPDVIFVGEMRDL--ETVETALRAA---ETGHLVFGTLHTNTAI 247 (372)
T ss_dssp CCSEEEESCCCSH--HHHHHHHHHH---TTTCEEEECCCCCSHH
T ss_pred CcCEEEECCCCCH--HHHHHHHHHH---hcCCEEEEEECcchHH
Confidence 7889999999633 4333322222 3466688888765543
No 387
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.54 E-value=0.11 Score=51.21 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=28.8
Q ss_pred chhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 193 RETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.++..+.+...+... ...+|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344445555554322 3589999999999999999998864
No 388
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.46 E-value=0.76 Score=51.62 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=37.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSI 270 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (883)
-.++.|.|.+|+||||||.+++.+.... +=..++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 4689999999999999999998742211 123577877644 4667777665544
No 389
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.43 E-value=0.2 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 390
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.40 E-value=0.32 Score=57.24 Aligned_cols=98 Identities=22% Similarity=0.209 Sum_probs=58.3
Q ss_pred cceecchhhHHHHHHHHcCCCC-------CCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHH
Q 047584 188 AKVYGRETEKKEIVELLLKDDS-------RNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVK 260 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (883)
..+.|.++.+++|.+.+.-+-. .+....+-|.++|++|.|||.||+++++. ....| +.++ ..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~f-----~~v~----~~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF-----ISIK----GP 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCEE-----EECC----HH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCce-----EEec----cc
Confidence 5677888888888776643210 01223456789999999999999999983 33222 3332 22
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCC
Q 047584 261 GLTRTILSSITKQTVDNNDLNFLQEELKKQLSRKKFLLVLDDVWN 305 (883)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 305 (883)
++ +.. +-......+...+...-+..+++|++|++..
T Consensus 546 ~l----~s~-----~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 546 EL----LTM-----WFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HH----HTT-----TCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred hh----hcc-----ccchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 22 111 1222333343444444456799999999843
No 391
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.39 E-value=0.55 Score=51.77 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=36.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSI 270 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (883)
-.++.|.|.+|+||||||..++...... .=..++|++.. .+..++...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 4689999999999999999998743221 12357777764 34667777666543
No 392
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.37 E-value=0.09 Score=51.68 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 393
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.32 E-value=0.14 Score=48.99 Aligned_cols=25 Identities=36% Similarity=0.328 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999864
No 394
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.21 E-value=0.32 Score=62.54 Aligned_cols=84 Identities=19% Similarity=0.052 Sum_probs=55.5
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCC-----CCCCChHHHHHHHH
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQT-----VDNNDLNFLQEELK 288 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 288 (883)
..+++.|+|++|+|||+||.++... ...+=..++|+++.+.++... ++.++... ....+.++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 3579999999999999999999873 333334678888888776665 23333110 12234455555555
Q ss_pred HHh-CCCcEEEEEeCCC
Q 047584 289 KQL-SRKKFLLVLDDVW 304 (883)
Q Consensus 289 ~~L-~~kr~LlVlDdv~ 304 (883)
+.. +.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 444 3567899999983
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.21 E-value=0.12 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.6
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|+|+|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 396
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.16 E-value=0.087 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.6
Q ss_pred EEEEEecCCchHHHHHHHHhcch
Q 047584 217 VIPIIGMGGLGKTTLAQLVYNDK 239 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~ 239 (883)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998743
No 397
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.15 E-value=0.097 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36999999999999999999884
No 398
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.12 E-value=0.089 Score=53.24 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.7
Q ss_pred EEEEecCCchHHHHHHHHhcc
Q 047584 218 IPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~ 238 (883)
+.|+|++|+||||||+.++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999973
No 399
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.10 E-value=0.08 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.5
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 400
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.09 E-value=0.11 Score=52.08 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.8
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 401
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.07 E-value=0.18 Score=55.04 Aligned_cols=50 Identities=24% Similarity=0.336 Sum_probs=35.7
Q ss_pred cceecchhhHHHHHHHHcCC--------CCCCCCCceEEEEEecCCchHHHHHHHHhc
Q 047584 188 AKVYGRETEKKEIVELLLKD--------DSRNDGGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..++|-+..++.|...+... ........+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 56889888888887666321 000111235689999999999999999987
No 402
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.03 E-value=0.11 Score=51.45 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||++.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 403
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.01 E-value=0.18 Score=48.27 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=50.2
Q ss_pred CCCceeEEeeCCC-CCCC-----cCccccCCCcccEEeccCCCcc-----ccccccccCCCccEEecCCCCch----hhc
Q 047584 599 KLQRLRVFSLRGY-CIPE-----LPDSVGDLRYLRYLNLSGTVIR-----SLPESVNKLYNLHSLLLEDCDRL----KKL 663 (883)
Q Consensus 599 ~l~~Lr~L~L~~~-~~~~-----lp~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~l----~~l 663 (883)
+-+.|+.|+|+++ .|.. +-+.+..-..|+.|+|++|.|. .|.+.+..-+.|++|+|+.|..- ..+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4567788888775 5542 3344555667888888888776 33444555667777777774321 223
Q ss_pred hhhhcCcCCCCceecCCC
Q 047584 664 CADMGNLIKLHHLKNSNT 681 (883)
Q Consensus 664 p~~i~~L~~L~~L~l~~~ 681 (883)
-..+..-+.|++|++++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 334445556777777654
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.97 E-value=0.094 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.1
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 405
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.95 E-value=1 Score=49.42 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=35.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSS 269 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~ 269 (883)
-.++.|.|.+|+||||+|..++.+...+ =..++|++... +..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 3689999999999999999998753222 23566766543 455566655544
No 406
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.92 E-value=0.075 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=16.4
Q ss_pred ceEEEEEecCCchHHHHHHHHh-c
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVY-N 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~-~ 237 (883)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 407
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.88 E-value=0.12 Score=53.58 Aligned_cols=25 Identities=40% Similarity=0.392 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...+++|+|+.|+||||+++.++.-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999873
No 408
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.83 E-value=0.12 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||++.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999999986
No 409
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.82 E-value=0.11 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+|.|.|++|+||+|.|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
No 410
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.66 E-value=0.12 Score=54.15 Aligned_cols=22 Identities=36% Similarity=0.378 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|+|+|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.65 E-value=0.26 Score=52.29 Aligned_cols=25 Identities=40% Similarity=0.392 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...+++|+|+.|+||||+++.++.-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4689999999999999999999873
No 412
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.64 E-value=0.14 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999986
No 413
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.63 E-value=0.12 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 414
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.63 E-value=0.21 Score=54.05 Aligned_cols=98 Identities=12% Similarity=0.183 Sum_probs=56.4
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCC----eEEEEEeCCCC-CHHHHHHHHHHH--hc
Q 047584 199 EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFD----LKAWTCVSEDF-DVKGLTRTILSS--IT 271 (883)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~s~~~-~~~~~~~~il~~--l~ 271 (883)
+.++.|..-. +-.-++|.|.+|+|||+|+.++.+.... +-+ .++++-+.+.. .+.++.+++.+. +.
T Consensus 140 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~ 212 (465)
T 3vr4_D 140 SAIDHLNTLV-----RGQKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID 212 (465)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGG
T ss_pred eEEecccccc-----cCCEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCcc
Confidence 4556554331 2245789999999999999999874322 223 56777777653 345555554432 11
Q ss_pred c-----CCCCCCChHH-----HHHHHHHHh---CCCcEEEEEeCC
Q 047584 272 K-----QTVDNNDLNF-----LQEELKKQL---SRKKFLLVLDDV 303 (883)
Q Consensus 272 ~-----~~~~~~~~~~-----~~~~l~~~L---~~kr~LlVlDdv 303 (883)
. .+.+...... ....+.+++ +++.+||++||+
T Consensus 213 rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 213 RSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp GEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 0 1111111111 122345555 378999999998
No 415
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.63 E-value=0.12 Score=50.38 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 416
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.59 E-value=0.13 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+++.|+|..|+|||||++.+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999863
No 417
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.56 E-value=0.22 Score=49.85 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=28.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSE 255 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 255 (883)
-.++.|+|.+|+||||||.+++... ...=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 3689999999999999998887532 22224577777554
No 418
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.54 E-value=0.13 Score=50.57 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 419
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.45 E-value=0.23 Score=53.02 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhc
Q 047584 197 KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...+.+.+.... ....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 344555554321 2468999999999999999999875
No 420
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.44 E-value=0.1 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.9
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 421
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.43 E-value=0.14 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=21.0
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999863
No 422
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.42 E-value=0.13 Score=49.31 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.-.|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999864
No 423
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.39 E-value=0.13 Score=52.62 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.4
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999975
No 424
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.37 E-value=0.15 Score=58.84 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=36.2
Q ss_pred cceecchhhHHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhc
Q 047584 188 AKVYGRETEKKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 57899999998888877543 4789999999999999999987
No 425
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.31 E-value=0.13 Score=50.92 Aligned_cols=21 Identities=43% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 426
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.30 E-value=0.16 Score=47.25 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.8
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 427
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.22 E-value=0.14 Score=51.90 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|+|||||++.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999986
No 428
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.21 E-value=0.13 Score=48.98 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999873
No 429
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.19 E-value=0.14 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...|.|.|++|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999863
No 430
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.16 E-value=0.12 Score=53.08 Aligned_cols=51 Identities=27% Similarity=0.299 Sum_probs=32.7
Q ss_pred cceecchhhHHHHHHHHcCCCC------CCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 188 AKVYGRETEKKEIVELLLKDDS------RNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+++|.+..++++.+....-.. -+-.-.+-+.|+|++|+||||||+.++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 5788888776666544321000 00001122899999999999999999973
No 431
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.13 E-value=0.25 Score=50.07 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=57.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCC-CCCHHHHHHHHHHHhccC-CCCCCChHHHHHHHHHHhC
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSE-DFDVKGLTRTILSSITKQ-TVDNNDLNFLQEELKKQLS 292 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~il~~l~~~-~~~~~~~~~~~~~l~~~L~ 292 (883)
-.+++|+|+.|+|||||++.+..- ....+...+++.-.. .+-.... ..+-.+ .... +...+...+.+.|.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-----~~~v~q~~~gl-~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-----KSIVNQREVGE-DTKSFADALRAALR 96 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-----SSEEEEEEBTT-TBSCHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-----ceeeeHHHhCC-CHHHHHHHHHHHHh
Confidence 479999999999999999999863 222223344332111 0000000 000000 0000 11223456666666
Q ss_pred CCcEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCCChhHHH
Q 047584 293 RKKFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTRNEEVAK 338 (883)
Q Consensus 293 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 338 (883)
.++=+|++|..- +.+....+.... ..|.-|++||....+..
T Consensus 97 ~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 97 EDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred hCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 677788899986 333333322221 24667888887755433
No 432
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.13 E-value=0.14 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999886
No 433
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.06 E-value=0.14 Score=51.19 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.7
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 434
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.04 E-value=0.15 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|+|||||++.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 36899999999999999999986
No 435
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.04 E-value=0.12 Score=50.56 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.4
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||++.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999976
No 436
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.03 E-value=0.17 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|+|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 437
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.00 E-value=0.59 Score=51.68 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=41.5
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCC-HHHHHHHH
Q 047584 199 EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFD-VKGLTRTI 266 (883)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 266 (883)
+.++.|..-. +-..++|.|..|+|||+|++++.+. .+-+.++++-+++..+ +.++.+++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 5667775431 2367899999999999999998763 2335788888887754 44454443
No 438
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.00 E-value=0.14 Score=52.04 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=20.8
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999999986
No 439
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.97 E-value=0.17 Score=50.33 Aligned_cols=24 Identities=29% Similarity=0.141 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
...+|+|.|+.|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999886
No 440
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.95 E-value=0.17 Score=51.44 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHhcc
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
....++.++|.||+||||++..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 34688999999999999999999853
No 441
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.94 E-value=0.16 Score=52.29 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999986
No 442
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.94 E-value=0.3 Score=48.43 Aligned_cols=24 Identities=42% Similarity=0.498 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...|+|.|+.|+||||+++.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999874
No 443
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.94 E-value=0.15 Score=51.71 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.7
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 444
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.89 E-value=0.45 Score=45.83 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.|+|=|..|+||||.++.++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3778899999999999999873
No 445
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.86 E-value=0.72 Score=45.79 Aligned_cols=33 Identities=33% Similarity=0.424 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhc
Q 047584 197 KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.++++..+... +.+.|+|..|+||||+...+.-
T Consensus 66 q~~~i~~i~~g--------~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 66 ESEILEAISQN--------SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhcC--------CEEEEEeCCCCCcHHhHHHHHh
Confidence 45566666443 5799999999999987766543
No 446
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.86 E-value=0.15 Score=53.05 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.4
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999886
No 447
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.81 E-value=0.16 Score=51.26 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.8
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||++.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 448
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.80 E-value=0.15 Score=51.18 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 449
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.76 E-value=0.16 Score=55.46 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4589999999999999999998863
No 450
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.74 E-value=0.18 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.5
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
+.|.|+|.+|+|||||++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 451
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.73 E-value=0.8 Score=49.67 Aligned_cols=105 Identities=12% Similarity=-0.063 Sum_probs=55.6
Q ss_pred CCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccC---CCCCCChHHHHHHHH
Q 047584 212 DGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQ---TVDNNDLNFLQEELK 288 (883)
Q Consensus 212 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~---~~~~~~~~~~~~~l~ 288 (883)
....++..|.|.+|.||||+.++.++. ...+.++ . ..+...++-+.+... .............|.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVlT--p---T~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~ 225 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLILV--P---GRQAAEMIRRRANASGIIVATKDNVRTVDSFLM 225 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEEE--S---CHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHH
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEEe--C---CHHHHHHHHHHhhhcCccccccceEEEeHHhhc
Confidence 456799999999999999999988752 1122222 1 122334444444321 111122222222332
Q ss_pred HHhCCC---cEEEEEeCCCCCChhhHhhhcccccCCCCCcEEEEeCC
Q 047584 289 KQLSRK---KFLLVLDDVWNENYTDWARLSLPFQAGAQGSKIVVTTR 332 (883)
Q Consensus 289 ~~L~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR 332 (883)
+.-..+ -=+||+|++...+...+..+....+ ..++|+.--
T Consensus 226 ~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD 268 (446)
T 3vkw_A 226 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGD 268 (446)
T ss_dssp TTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEEC
T ss_pred CCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecC
Confidence 221111 3479999997766555555443322 256666553
No 452
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.70 E-value=0.17 Score=51.12 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999975
No 453
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.66 E-value=0.43 Score=52.35 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=55.5
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHH-HHHhcchhhhccCC-eEEEEEeCCCC-CHHHHHHHHHHHhc----
Q 047584 199 EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLA-QLVYNDKRVQDHFD-LKAWTCVSEDF-DVKGLTRTILSSIT---- 271 (883)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~il~~l~---- 271 (883)
+.++.|..-. +-.-++|+|.+|+|||+|| ..+.+.. .-+ .++++-+++.. .+.++.+.+.+.=.
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 4566665431 2356899999999999996 4777632 245 35778888764 34455555543210
Q ss_pred ---cCCCCCCChHH-----HHHHHHHHh--CCCcEEEEEeCC
Q 047584 272 ---KQTVDNNDLNF-----LQEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 272 ---~~~~~~~~~~~-----~~~~l~~~L--~~kr~LlVlDdv 303 (883)
..+.+...... ....+.+++ +++..||++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 01111111111 112344444 578999999998
No 454
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.65 E-value=0.19 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=21.6
Q ss_pred CceEEEEEecCCchHHHHHHHHhc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999986
No 455
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.64 E-value=1.1 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 456
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.62 E-value=0.093 Score=54.22 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=18.2
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+|+|.|..|+||||+|+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 457
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.55 E-value=0.17 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|+|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 46899999999999999999986
No 458
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.54 E-value=0.18 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=20.7
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999986
No 459
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.49 E-value=0.18 Score=51.32 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.8
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||++.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999987
No 460
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.49 E-value=0.18 Score=51.49 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|+|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 461
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.47 E-value=0.17 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=20.7
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999986
No 462
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.44 E-value=0.41 Score=52.46 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=55.3
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHH-HHHhcchhhhccCC-eEEEEEeCCCCC-HHHHHHHHHHHhcc---
Q 047584 199 EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLA-QLVYNDKRVQDHFD-LKAWTCVSEDFD-VKGLTRTILSSITK--- 272 (883)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~il~~l~~--- 272 (883)
+.++.|..-. +-.-++|+|.+|+|||+|| ..+.+.. .-+ .++++-+++... +.++.+++.+.=..
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 4566665432 2356899999999999996 4677632 345 357788887643 44555555432110
Q ss_pred ----CCCCCCChHHH-----HHHHHHHh--CCCcEEEEEeCC
Q 047584 273 ----QTVDNNDLNFL-----QEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 273 ----~~~~~~~~~~~-----~~~l~~~L--~~kr~LlVlDdv 303 (883)
.+.+....... ...+.+++ +++..||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 01111111111 12344444 578999999998
No 463
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.38 E-value=0.17 Score=48.87 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.37 E-value=0.19 Score=47.90 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.4
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
+.|.|+|+.|+||||||.++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999999986
No 465
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.30 E-value=0.18 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.706 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 466
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.22 E-value=0.22 Score=54.44 Aligned_cols=42 Identities=33% Similarity=0.417 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCCC---CCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 197 KKEIVELLLKDDSR---NDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 197 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.++|.+++...... .....++|.|+|.+|+||||+|..+...
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34566666432110 1123579999999999999999998874
No 467
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.20 E-value=0.2 Score=50.01 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHhc
Q 047584 213 GGFAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999886
No 468
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.20 E-value=0.18 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.7
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||++.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999986
No 469
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.18 E-value=0.19 Score=51.10 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=20.5
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||++.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 6899999999999999999975
No 470
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.13 E-value=0.18 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.7
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.++.|+|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999886
No 471
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.08 E-value=0.22 Score=47.30 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999864
No 472
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.06 E-value=0.64 Score=45.33 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999874
No 473
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.06 E-value=0.25 Score=47.31 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=61.9
Q ss_pred hcCCCceeEEeeCCCCCCC-----cCccccCCCcccEEeccCCCcc-----ccccccccCCCccEEecCCCC--chh---
Q 047584 597 LLKLQRLRVFSLRGYCIPE-----LPDSVGDLRYLRYLNLSGTVIR-----SLPESVNKLYNLHSLLLEDCD--RLK--- 661 (883)
Q Consensus 597 l~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~c~--~l~--- 661 (883)
+..-++|+.|+|++|.+.. +-..+..-+.|++|+|++|.|. .+-+.+..-..|++|+|++|. .+.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 3355789999999999863 3445556678999999999987 344556666789999998642 222
Q ss_pred --hchhhhcCcCCCCceecCCCC
Q 047584 662 --KLCADMGNLIKLHHLKNSNTD 682 (883)
Q Consensus 662 --~lp~~i~~L~~L~~L~l~~~~ 682 (883)
.+-..+..-+.|..|+++.+.
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCCC
Confidence 234445666889999988664
No 474
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.96 E-value=0.19 Score=46.32 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.|.++|.+|+|||||++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999764
No 475
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.87 E-value=0.27 Score=53.30 Aligned_cols=100 Identities=11% Similarity=0.194 Sum_probs=56.5
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhh--------ccCC-eEEEEEeCCCC-CHHHHHHHHHH
Q 047584 199 EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQ--------DHFD-LKAWTCVSEDF-DVKGLTRTILS 268 (883)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~il~ 268 (883)
+.++.|..-. +-.-++|.|.+|+|||+|+.++.+..... ++=+ .++++-+.+.. .+.++.+++.+
T Consensus 136 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLV-----RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCB-----TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeecccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 4556554331 23457899999999999999998753321 1112 56777777653 34455555433
Q ss_pred H--hcc-----CCCCCCChHHH-----HHHHHHHh---CCCcEEEEEeCC
Q 047584 269 S--ITK-----QTVDNNDLNFL-----QEELKKQL---SRKKFLLVLDDV 303 (883)
Q Consensus 269 ~--l~~-----~~~~~~~~~~~-----~~~l~~~L---~~kr~LlVlDdv 303 (883)
. +.. ...+....... ...+.+++ +++..||++||+
T Consensus 211 ~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 211 TGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp TSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 2 110 11122222221 22345555 378999999998
No 476
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.87 E-value=0.65 Score=59.03 Aligned_cols=81 Identities=20% Similarity=0.096 Sum_probs=0.0
Q ss_pred eEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHHHH
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQTV-----DNNDLNFLQEELKKQ 290 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~~~ 290 (883)
+++.|+|.+|+||||||.+++. .....=..++|++....++... ++.++.... ...+.+++...+...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred h-CCCcEEEEEeCC
Q 047584 291 L-SRKKFLLVLDDV 303 (883)
Q Consensus 291 L-~~kr~LlVlDdv 303 (883)
. ..+.-+||+|-+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 477
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.86 E-value=0.69 Score=59.58 Aligned_cols=85 Identities=19% Similarity=0.053 Sum_probs=57.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCCCCHHHHHHHHHHHhccCC-----CCCCChHHHHHHHHH
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSEDFDVKGLTRTILSSITKQT-----VDNNDLNFLQEELKK 289 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~~ 289 (883)
-+++.|+|++|+||||||.+++.. ....=..++|++....++... ++.++... .+..+.+++...++.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 479999999999999999999874 332224688888877766542 34443321 123566666666665
Q ss_pred Hh-CCCcEEEEEeCCCCC
Q 047584 290 QL-SRKKFLLVLDDVWNE 306 (883)
Q Consensus 290 ~L-~~kr~LlVlDdv~~~ 306 (883)
.. ..+.-+||+|-+...
T Consensus 456 lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHTCCSEEEESCGGGC
T ss_pred HHHhcCCcEEEECCHHHh
Confidence 44 345679999988543
No 478
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.85 E-value=0.8 Score=50.87 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=37.0
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC
Q 047584 199 EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED 256 (883)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 256 (883)
+.++.|..-. +-..++|.|..|+|||+|+.++.+. .+-+.++++-+++.
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER 269 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGER 269 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEEC
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEeccc
Confidence 5677775432 3467899999999999999999873 23367888888876
No 479
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.76 E-value=0.21 Score=50.87 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 480
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.62 E-value=0.22 Score=46.77 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 481
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.54 E-value=0.21 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=20.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 36899999999999999999975
No 482
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.50 E-value=0.23 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.147 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
..+++|+|++|+|||||++.+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999986
No 483
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.49 E-value=0.51 Score=49.10 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=28.9
Q ss_pred CceEEEEEecCCchHHHHHHHHhcchhhhccCCeEEEEEeCCC
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDKRVQDHFDLKAWTCVSED 256 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 256 (883)
..++|+|+|-||+||||+|..+.... ...=..++-|.....
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~~ 80 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDPK 80 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESSS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCCC
Confidence 46899999999999999998887632 222224566666543
No 484
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.39 E-value=0.28 Score=46.05 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
....|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999764
No 485
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.36 E-value=0.22 Score=46.14 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 047584 217 VIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
-|+|+|.+|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998753
No 486
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.31 E-value=0.3 Score=46.72 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=21.9
Q ss_pred CceEEEEEecCCchHHHHHHHHhcc
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
....|+|+|.+|+|||||.+.+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999999864
No 487
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.24 E-value=0.3 Score=45.64 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.--|+|+|.+|+|||||++.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999999864
No 488
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.24 E-value=0.26 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...|+|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999863
No 489
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.23 E-value=0.23 Score=50.34 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 490
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.21 E-value=0.7 Score=45.34 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchHHHHHHHHhcch
Q 047584 214 GFAVIPIIGMGGLGKTTLAQLVYNDK 239 (883)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 239 (883)
....|.|.|+.|+||||+++.+....
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998743
No 491
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.21 E-value=0.27 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.--|.|+|.+|+|||||++.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999999764
No 492
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.17 E-value=0.64 Score=51.08 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=56.4
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCchHHHHH-HHHhcchhh----hccCC-eEEEEEeCCCC-CHHHHHHHHHHHhc
Q 047584 199 EIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLA-QLVYNDKRV----QDHFD-LKAWTCVSEDF-DVKGLTRTILSSIT 271 (883)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~s~~~-~~~~~~~~il~~l~ 271 (883)
+.++.|..-. +-.-++|+|.+|+|||+|| ..+.+.... .++-+ .++++-+++.. .+.++.+.+.+.=.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 4567675432 2356899999999999995 466663221 01244 47788888764 34455555543210
Q ss_pred -------cCCCCCCChHHH-----HHHHHHHh--CCCcEEEEEeCC
Q 047584 272 -------KQTVDNNDLNFL-----QEELKKQL--SRKKFLLVLDDV 303 (883)
Q Consensus 272 -------~~~~~~~~~~~~-----~~~l~~~L--~~kr~LlVlDdv 303 (883)
..+.+....... ...+.+++ +++..||++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 011111111111 12344444 578999999998
No 493
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.00 E-value=0.24 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.5
Q ss_pred eEEEEEecCCchHHHHHHHHhc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
--|+|+|.+|+|||||++.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999864
No 494
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=87.97 E-value=0.53 Score=48.67 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEEecCCchHHHHHHHHhcc
Q 047584 197 KKEIVELLLKDDSRNDGGFAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.+++.+.|.............|+|+|.+|+|||||...+...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 345555554432212234678999999999999999999864
No 495
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.92 E-value=0.23 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.3
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
-.|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 496
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.88 E-value=0.25 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.2
Q ss_pred eEEEEEecCCchHHHHHHHHhcc
Q 047584 216 AVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
--|.|+|.+|+|||||++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 497
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.87 E-value=0.28 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchHHHHHHHHhc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYN 237 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (883)
-.+++|+|+.|+|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999986
No 498
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.84 E-value=0.33 Score=46.26 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...|+|+|.+|+|||||++.+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999875
No 499
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.83 E-value=0.33 Score=45.98 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.5
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
...|+|+|.+|+|||||.+.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999999864
No 500
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.75 E-value=0.25 Score=46.83 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.9
Q ss_pred ceEEEEEecCCchHHHHHHHHhcc
Q 047584 215 FAVIPIIGMGGLGKTTLAQLVYND 238 (883)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (883)
.--|+|+|.+|+|||||++.+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999764
Done!