Query 047585
Match_columns 185
No_of_seqs 194 out of 1439
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 12:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10151 ribosomal-protein-L7/ 100.0 3.5E-30 7.6E-35 174.2 19.3 170 10-181 1-177 (179)
2 PRK15130 spermidine N1-acetylt 100.0 3.6E-30 7.7E-35 175.2 18.2 168 15-184 2-170 (186)
3 PRK10809 ribosomal-protein-S5- 100.0 1.5E-29 3.2E-34 173.2 18.3 172 12-184 10-191 (194)
4 PRK10140 putative acetyltransf 100.0 6E-27 1.3E-31 155.9 19.2 159 19-180 3-162 (162)
5 TIGR03585 PseH pseudaminic aci 100.0 6.2E-27 1.3E-31 155.0 16.3 154 21-177 2-156 (156)
6 PF13420 Acetyltransf_4: Acety 100.0 2.4E-26 5.2E-31 152.0 16.7 152 22-175 1-155 (155)
7 COG1670 RimL Acetyltransferase 99.9 3.8E-25 8.2E-30 150.2 16.4 170 15-185 5-184 (187)
8 PF13302 Acetyltransf_3: Acety 99.9 8.9E-25 1.9E-29 142.4 13.6 135 19-155 1-142 (142)
9 COG1247 Sortase and related ac 99.9 8.9E-23 1.9E-27 133.2 15.8 163 20-184 2-168 (169)
10 TIGR03827 GNAT_ablB putative b 99.9 2.3E-22 4.9E-27 143.6 14.3 151 17-178 113-264 (266)
11 PRK09491 rimI ribosomal-protei 99.9 6.2E-21 1.3E-25 124.9 15.0 143 20-179 2-145 (146)
12 PF13523 Acetyltransf_8: Acety 99.9 3.2E-20 7E-25 122.3 17.7 137 22-161 1-143 (152)
13 PRK10146 aminoalkylphosphonic 99.9 1.1E-20 2.4E-25 123.3 12.1 132 18-158 2-137 (144)
14 TIGR02382 wecD_rffC TDP-D-fuco 99.9 4.6E-20 9.9E-25 125.9 14.6 135 19-160 43-186 (191)
15 PRK03624 putative acetyltransf 99.9 8.6E-20 1.9E-24 118.4 15.1 129 19-160 2-131 (140)
16 PRK10514 putative acetyltransf 99.8 7.9E-20 1.7E-24 119.5 12.5 142 20-178 2-143 (145)
17 PLN02706 glucosamine 6-phospha 99.8 1.3E-19 2.8E-24 119.1 13.2 132 17-159 4-144 (150)
18 TIGR02406 ectoine_EctA L-2,4-d 99.8 1.1E-19 2.3E-24 120.2 12.3 146 22-178 1-153 (157)
19 PTZ00330 acetyltransferase; Pr 99.8 9E-19 2E-23 114.7 15.5 130 19-159 6-141 (147)
20 PRK10975 TDP-fucosamine acetyl 99.8 6.1E-19 1.3E-23 120.7 14.5 136 19-161 46-190 (194)
21 PRK10562 putative acetyltransf 99.8 4.4E-18 9.5E-23 111.2 13.7 141 22-181 2-143 (145)
22 KOG3216 Diamine acetyltransfer 99.8 1.5E-17 3.3E-22 104.6 13.3 140 18-161 2-148 (163)
23 TIGR01575 rimI ribosomal-prote 99.8 1.1E-17 2.5E-22 107.2 12.4 90 70-164 32-121 (131)
24 KOG3139 N-acetyltransferase [G 99.8 6.5E-17 1.4E-21 102.9 14.8 107 68-179 54-163 (165)
25 PRK09831 putative acyltransfer 99.8 2E-17 4.4E-22 108.3 11.8 139 20-181 1-146 (147)
26 PF00583 Acetyltransf_1: Acety 99.7 9E-17 1.9E-21 95.0 10.7 79 75-155 2-83 (83)
27 PHA00673 acetyltransferase dom 99.7 7.4E-16 1.6E-20 99.5 13.2 129 25-158 12-145 (154)
28 TIGR03103 trio_acet_GNAT GNAT- 99.7 7.1E-16 1.5E-20 119.8 15.5 134 17-162 80-220 (547)
29 TIGR03448 mycothiol_MshD mycot 99.7 1.2E-15 2.6E-20 110.8 15.3 139 17-160 147-289 (292)
30 PRK07757 acetyltransferase; Pr 99.7 6.4E-16 1.4E-20 101.8 12.6 121 20-160 2-123 (152)
31 COG3981 Predicted acetyltransf 99.7 1.8E-15 4E-20 97.5 13.1 141 19-161 3-161 (174)
32 COG0456 RimI Acetyltransferase 99.7 2E-15 4.2E-20 101.8 13.2 138 17-164 9-159 (177)
33 PRK07922 N-acetylglutamate syn 99.7 8.8E-16 1.9E-20 102.6 11.1 122 18-159 4-127 (169)
34 PHA01807 hypothetical protein 99.7 2.8E-15 6.1E-20 97.8 12.9 124 24-152 8-136 (153)
35 TIGR01686 FkbH FkbH-like domai 99.7 3.2E-15 6.9E-20 109.6 12.7 126 19-157 186-319 (320)
36 PF13527 Acetyltransf_9: Acety 99.6 1.3E-14 2.8E-19 92.6 10.6 122 21-157 1-127 (127)
37 PF13673 Acetyltransf_10: Acet 99.6 3.3E-14 7.1E-19 89.4 10.7 83 59-154 33-117 (117)
38 KOG3396 Glucosamine-phosphate 99.6 3.4E-14 7.4E-19 87.7 10.1 129 20-159 7-144 (150)
39 COG1246 ArgA N-acetylglutamate 99.6 3.5E-14 7.7E-19 90.5 10.4 121 21-159 2-123 (153)
40 PLN02825 amino-acid N-acetyltr 99.6 2.5E-14 5.4E-19 109.4 11.3 123 20-160 368-491 (515)
41 PF13508 Acetyltransf_7: Acety 99.6 7.3E-14 1.6E-18 81.7 10.5 76 69-156 3-79 (79)
42 TIGR03448 mycothiol_MshD mycot 99.6 1E-13 2.2E-18 100.7 13.2 129 23-163 4-132 (292)
43 PRK10314 putative acyltransfer 99.6 6E-14 1.3E-18 92.2 10.4 86 69-159 48-134 (153)
44 TIGR01890 N-Ac-Glu-synth amino 99.5 6.5E-14 1.4E-18 106.5 11.0 123 20-160 283-406 (429)
45 KOG4135 Predicted phosphogluco 99.5 3.8E-13 8.2E-18 84.4 11.9 146 12-159 6-170 (185)
46 PRK05279 N-acetylglutamate syn 99.5 5.2E-14 1.1E-18 107.5 9.9 123 19-159 294-417 (441)
47 PRK12308 bifunctional arginino 99.5 6.2E-14 1.4E-18 110.8 10.5 123 18-160 462-585 (614)
48 KOG3235 Subunit of the major N 99.5 1.9E-12 4.1E-17 82.2 10.8 133 20-165 2-141 (193)
49 PRK01346 hypothetical protein; 99.5 3.8E-12 8.2E-17 96.7 14.5 130 19-164 6-141 (411)
50 KOG3138 Predicted N-acetyltran 99.5 4.3E-13 9.3E-18 89.1 7.7 149 17-177 13-170 (187)
51 PF08445 FR47: FR47-like prote 99.4 1.2E-11 2.7E-16 73.1 12.6 58 99-159 25-82 (86)
52 COG3393 Predicted acetyltransf 99.4 4.5E-12 9.8E-17 87.5 11.9 136 17-164 131-267 (268)
53 cd02169 Citrate_lyase_ligase C 99.4 8.7E-12 1.9E-16 89.8 11.0 79 71-161 8-86 (297)
54 TIGR00124 cit_ly_ligase [citra 99.3 4.9E-11 1.1E-15 87.3 12.7 98 53-162 11-112 (332)
55 KOG2488 Acetyltransferase (GNA 99.3 1.4E-11 3.1E-16 80.7 7.9 82 78-161 102-184 (202)
56 PF12746 GNAT_acetyltran: GNAT 99.3 2E-10 4.4E-15 81.1 13.2 127 18-166 127-254 (265)
57 PRK13688 hypothetical protein; 99.3 1.4E-10 3E-15 76.2 11.3 82 69-160 45-134 (156)
58 KOG3234 Acetyltransferase, (GN 99.3 1.2E-10 2.5E-15 74.1 10.0 133 21-165 3-137 (173)
59 COG3153 Predicted acetyltransf 99.2 2.4E-10 5.2E-15 75.3 11.3 127 19-161 3-133 (171)
60 KOG3397 Acetyltransferases [Ge 99.2 7.7E-10 1.7E-14 71.6 10.3 134 12-160 5-142 (225)
61 COG2153 ElaA Predicted acyltra 99.0 3E-09 6.5E-14 67.0 8.9 86 69-159 49-136 (155)
62 PF08444 Gly_acyl_tr_C: Aralky 99.0 1.2E-09 2.7E-14 63.5 6.2 72 77-158 7-79 (89)
63 cd04301 NAT_SF N-Acyltransfera 99.0 6.6E-09 1.4E-13 57.3 8.2 61 73-136 3-64 (65)
64 TIGR01211 ELP3 histone acetylt 99.0 6.3E-09 1.4E-13 80.5 10.3 80 77-161 422-518 (522)
65 PF12568 DUF3749: Acetyltransf 98.7 2.1E-07 4.6E-12 57.9 8.8 110 24-157 9-123 (128)
66 PF14542 Acetyltransf_CG: GCN5 98.6 1.6E-06 3.4E-11 50.2 9.2 70 72-152 2-72 (78)
67 COG5628 Predicted acetyltransf 98.5 1.7E-06 3.7E-11 52.8 8.6 81 70-156 38-120 (143)
68 COG3818 Predicted acetyltransf 98.5 1.8E-06 3.8E-11 53.6 7.8 127 20-161 8-150 (167)
69 PF13718 GNAT_acetyltr_2: GNAT 98.5 9.1E-07 2E-11 59.8 7.0 119 53-177 14-194 (196)
70 KOG4144 Arylalkylamine N-acety 98.3 1.9E-06 4.2E-11 55.0 5.8 129 18-159 10-161 (190)
71 PF11039 DUF2824: Protein of u 98.0 8.1E-05 1.7E-09 46.3 8.3 108 67-183 36-143 (151)
72 COG4552 Eis Predicted acetyltr 98.0 3.1E-05 6.6E-10 56.4 7.4 88 68-162 38-130 (389)
73 PRK10456 arginine succinyltran 98.0 9.9E-05 2.2E-09 54.1 9.9 102 20-124 2-148 (344)
74 COG2388 Predicted acetyltransf 98.0 2.5E-05 5.4E-10 46.9 5.5 62 68-134 14-76 (99)
75 PF04958 AstA: Arginine N-succ 98.0 6.5E-05 1.4E-09 55.2 8.7 102 20-124 2-150 (342)
76 PHA00432 internal virion prote 98.0 6.4E-05 1.4E-09 47.6 7.3 117 20-159 1-121 (137)
77 PF06852 DUF1248: Protein of u 97.9 0.00087 1.9E-08 45.0 12.5 121 24-159 9-137 (181)
78 COG1444 Predicted P-loop ATPas 97.9 4.9E-05 1.1E-09 61.2 7.6 73 101-177 537-609 (758)
79 PHA01733 hypothetical protein 97.9 1.3E-05 2.8E-10 51.5 3.5 130 21-161 4-134 (153)
80 COG0454 WecD Histone acetyltra 97.9 2.4E-05 5.3E-10 48.4 4.7 44 101-154 87-130 (156)
81 COG3053 CitC Citrate lyase syn 97.9 0.00028 6.1E-09 50.3 9.9 81 71-163 38-119 (352)
82 COG3882 FkbH Predicted enzyme 97.8 6.3E-05 1.4E-09 57.1 6.6 130 19-159 413-550 (574)
83 TIGR03244 arg_catab_AstA argin 97.8 0.00031 6.6E-09 51.5 9.3 100 21-123 1-145 (336)
84 TIGR03245 arg_AOST_alph argini 97.8 0.00031 6.7E-09 51.4 8.9 101 21-124 1-147 (336)
85 TIGR03243 arg_catab_AOST argin 97.7 0.00041 8.9E-09 50.8 8.9 101 21-124 1-146 (335)
86 PF13480 Acetyltransf_6: Acety 97.4 0.004 8.7E-08 39.9 10.0 116 19-139 19-136 (142)
87 PF00765 Autoind_synth: Autoin 97.3 0.013 2.7E-07 39.8 11.4 98 67-170 43-165 (182)
88 PF13880 Acetyltransf_13: ESCO 97.0 0.0013 2.9E-08 36.8 3.7 25 100-124 10-34 (70)
89 PF05301 Mec-17: Touch recepto 96.8 0.011 2.4E-07 36.6 6.8 71 77-152 17-98 (120)
90 PF09390 DUF1999: Protein of u 96.8 0.059 1.3E-06 34.4 11.6 130 20-158 1-140 (161)
91 TIGR03827 GNAT_ablB putative b 96.8 0.0062 1.3E-07 43.9 6.5 65 111-184 21-85 (266)
92 PHA00771 head assembly protein 96.7 0.022 4.8E-07 35.5 7.4 106 69-183 38-143 (151)
93 COG1243 ELP3 Histone acetyltra 96.7 0.0037 8E-08 47.6 4.8 78 77-160 415-510 (515)
94 TIGR03694 exosort_acyl putativ 96.6 0.15 3.3E-06 36.3 12.6 83 70-157 56-196 (241)
95 PRK13834 putative autoinducer 96.4 0.17 3.8E-06 35.1 13.0 76 77-157 62-163 (207)
96 KOG2036 Predicted P-loop ATPas 96.4 0.021 4.5E-07 46.0 7.6 80 100-179 619-745 (1011)
97 COG3375 Uncharacterized conser 96.4 0.16 3.5E-06 35.2 10.8 100 60-162 37-140 (266)
98 PRK01305 arginyl-tRNA-protein 96.3 0.19 4E-06 35.7 11.2 101 52-160 128-228 (240)
99 cd04264 DUF619-NAGS DUF619 dom 96.2 0.066 1.4E-06 32.4 7.6 64 73-144 12-76 (99)
100 KOG2535 RNA polymerase II elon 96.2 0.01 2.2E-07 43.7 4.7 52 105-160 497-548 (554)
101 PF04377 ATE_C: Arginine-tRNA- 96.2 0.17 3.6E-06 32.2 9.7 99 53-159 24-122 (128)
102 TIGR03019 pepcterm_femAB FemAB 96.0 0.29 6.3E-06 36.5 11.9 137 19-168 151-290 (330)
103 PF01233 NMT: Myristoyl-CoA:pr 95.8 0.3 6.5E-06 32.1 10.3 107 18-127 22-142 (162)
104 PF02799 NMT_C: Myristoyl-CoA: 95.4 0.52 1.1E-05 32.1 10.2 128 22-161 31-168 (190)
105 PF01853 MOZ_SAS: MOZ/SAS fami 95.1 0.17 3.7E-06 34.3 6.9 46 79-127 66-112 (188)
106 cd04265 DUF619-NAGS-U DUF619 d 94.8 0.35 7.6E-06 29.3 7.1 59 77-144 17-76 (99)
107 PF04816 DUF633: Family of unk 94.4 0.73 1.6E-05 32.0 8.9 69 111-181 74-142 (205)
108 PLN03238 probable histone acet 94.4 0.27 5.9E-06 35.5 6.8 47 78-127 140-187 (290)
109 KOG3698 Hyaluronoglucosaminida 94.2 1.1 2.3E-05 35.8 10.0 54 105-160 826-879 (891)
110 KOG4601 Uncharacterized conser 94.1 0.13 2.7E-06 35.8 4.4 143 1-154 1-163 (264)
111 COG3138 AstA Arginine/ornithin 93.8 0.3 6.6E-06 35.2 6.0 67 20-89 2-79 (336)
112 COG2401 ABC-type ATPase fused 93.8 0.053 1.2E-06 41.4 2.4 57 101-159 247-308 (593)
113 KOG2779 N-myristoyl transferas 93.4 0.87 1.9E-05 34.0 8.0 133 20-164 261-402 (421)
114 PF11124 Pho86: Inorganic phos 93.3 2.4 5.1E-05 31.1 10.1 91 68-158 168-270 (304)
115 PTZ00064 histone acetyltransfe 92.7 0.42 9.1E-06 37.3 5.8 47 78-127 369-416 (552)
116 KOG2747 Histone acetyltransfer 92.6 0.23 4.9E-06 37.6 4.2 54 69-125 233-290 (396)
117 PF11090 DUF2833: Protein of u 92.6 0.31 6.7E-06 28.4 3.9 29 130-158 55-83 (86)
118 PLN03239 histone acetyltransfe 92.5 0.58 1.3E-05 34.9 6.1 47 78-127 198-245 (351)
119 COG3916 LasI N-acyl-L-homoseri 92.0 2.9 6.3E-05 28.9 11.9 92 63-159 46-163 (209)
120 PLN00104 MYST -like histone ac 91.2 0.45 9.7E-06 36.8 4.5 47 78-127 291-338 (450)
121 PRK14852 hypothetical protein; 91.1 1.1 2.4E-05 38.4 6.9 140 18-167 27-189 (989)
122 PF04339 DUF482: Protein of un 90.7 5.1 0.00011 30.6 9.6 131 19-167 199-337 (370)
123 KOG2779 N-myristoyl transferas 90.3 1.9 4.1E-05 32.3 6.8 69 58-126 119-198 (421)
124 COG2384 Predicted SAM-dependen 89.0 3.7 8.1E-05 28.8 7.1 68 110-179 92-159 (226)
125 PF09924 DUF2156: Uncharacteri 87.8 3.8 8.2E-05 30.1 7.2 112 19-140 132-248 (299)
126 PF13444 Acetyltransf_5: Acety 85.3 5.4 0.00012 24.0 5.8 49 69-117 30-100 (101)
127 KOG2696 Histone acetyltransfer 84.1 3.4 7.3E-05 31.2 5.1 59 80-141 200-260 (403)
128 cd08356 Glo_EDI_BRP_like_17 Th 83.5 3.7 8E-05 25.1 4.7 21 143-163 13-33 (113)
129 PF04768 DUF619: Protein of un 81.9 13 0.00028 25.0 8.4 111 24-156 27-143 (170)
130 PF02100 ODC_AZ: Ornithine dec 81.8 9 0.0002 23.6 5.7 55 103-159 30-87 (108)
131 COG5027 SAS2 Histone acetyltra 77.3 1.9 4E-05 32.2 2.0 38 79-119 248-286 (395)
132 PHA02769 hypothetical protein; 76.3 3.6 7.8E-05 25.4 2.7 38 120-161 104-141 (154)
133 PF02474 NodA: Nodulation prot 75.7 8.1 0.00018 26.0 4.4 51 97-153 86-137 (196)
134 PF02388 FemAB: FemAB family; 75.2 9.2 0.0002 29.6 5.4 87 71-161 37-142 (406)
135 cd08350 BLMT_like BLMT, a bleo 73.7 12 0.00026 22.9 4.9 19 143-161 14-32 (120)
136 cd09012 Glo_EDI_BRP_like_24 Th 71.6 7 0.00015 24.1 3.4 17 142-158 11-27 (124)
137 KOG4387 Ornithine decarboxylas 70.3 28 0.00061 23.6 5.9 75 101-179 105-182 (191)
138 cd08362 BphC5-RrK37_N_like N-t 68.5 23 0.00049 21.5 5.3 36 130-166 3-39 (120)
139 cd07235 MRD Mitomycin C resist 68.2 8.1 0.00018 23.7 3.2 24 134-158 4-27 (122)
140 PF07315 DUF1462: Protein of u 67.8 15 0.00032 21.8 3.8 44 41-84 38-81 (93)
141 COG2348 Peptidoglycan interpep 67.2 59 0.0013 25.5 8.9 88 70-161 41-146 (418)
142 PRK15312 antimicrobial resista 65.6 12 0.00027 27.5 3.9 63 53-116 188-251 (298)
143 PF12953 DUF3842: Domain of un 65.6 20 0.00043 22.9 4.3 62 106-173 6-67 (131)
144 COG3473 Maleate cis-trans isom 64.1 34 0.00074 24.0 5.5 31 130-160 117-150 (238)
145 cd08353 Glo_EDI_BRP_like_7 Thi 63.4 9.7 0.00021 24.1 2.9 29 130-159 3-31 (142)
146 PF07395 Mig-14: Mig-14; Inte 61.7 18 0.00038 26.3 4.0 63 53-116 158-221 (264)
147 COG2231 Uncharacterized protei 61.3 12 0.00025 26.0 3.0 40 110-158 121-160 (215)
148 COG2898 Uncharacterized conser 61.1 61 0.0013 26.3 7.2 58 77-141 401-461 (538)
149 COG3607 Predicted lactoylgluta 59.7 8.5 0.00018 24.4 2.0 22 142-163 14-35 (133)
150 PF00925 GTP_cyclohydro2: GTP 58.7 30 0.00064 23.2 4.6 47 103-160 121-167 (169)
151 cd07267 THT_Oxygenase_N N-term 58.0 30 0.00065 20.9 4.3 29 131-160 4-32 (113)
152 KOG0207 Cation transport ATPas 57.9 1E+02 0.0022 26.8 8.2 77 54-156 688-764 (951)
153 COG5092 NMT1 N-myristoyl trans 56.0 31 0.00067 25.8 4.5 138 18-163 257-418 (451)
154 PF12261 T_hemolysin: Thermost 54.4 55 0.0012 22.3 5.3 75 77-159 43-142 (179)
155 cd08358 Glo_EDI_BRP_like_21 Th 54.0 26 0.00055 22.3 3.5 20 141-160 12-32 (127)
156 cd08342 HPPD_N_like N-terminal 52.0 33 0.00071 21.7 3.9 28 133-161 3-31 (136)
157 cd08344 MhqB_like_N N-terminal 50.6 30 0.00064 20.8 3.4 28 131-159 3-30 (112)
158 COG0807 RibA GTP cyclohydrolas 50.4 53 0.0012 22.7 4.8 50 101-161 120-169 (193)
159 PF13380 CoA_binding_2: CoA bi 49.6 62 0.0013 20.1 5.2 71 77-158 37-107 (116)
160 PF12681 Glyoxalase_2: Glyoxal 48.9 31 0.00067 20.3 3.3 22 143-164 7-29 (108)
161 COG5092 NMT1 N-myristoyl trans 48.7 70 0.0015 24.0 5.3 102 22-126 84-196 (451)
162 cd07238 Glo_EDI_BRP_like_5 Thi 47.9 22 0.00047 21.3 2.5 16 143-158 12-28 (112)
163 PRK12303 tumor necrosis factor 45.9 49 0.0011 20.9 3.8 49 110-158 103-151 (192)
164 COG5630 ARG2 Acetylglutamate s 45.1 1.2E+02 0.0026 23.5 6.2 74 77-157 381-458 (495)
165 PRK02983 lysS lysyl-tRNA synth 44.9 2.1E+02 0.0045 25.9 8.5 59 77-141 429-488 (1094)
166 TIGR00505 ribA GTP cyclohydrol 44.8 70 0.0015 22.0 4.8 46 104-160 121-166 (191)
167 PF06559 DCD: 2'-deoxycytidine 44.5 22 0.00047 26.8 2.3 35 77-113 323-357 (364)
168 COG2994 HlyC ACP:hemolysin acy 44.1 89 0.0019 20.4 5.3 86 53-146 37-140 (148)
169 PF02794 HlyC: RTX toxin acylt 43.6 88 0.0019 20.1 5.3 38 53-91 20-57 (133)
170 cd07240 ED_TypeI_classII_N N-t 43.2 71 0.0015 19.0 5.1 33 132-165 4-37 (117)
171 PRK00393 ribA GTP cyclohydrola 43.0 75 0.0016 22.0 4.7 46 104-160 124-169 (197)
172 cd08346 PcpA_N_like N-terminal 42.8 58 0.0013 19.6 4.0 28 132-160 3-31 (126)
173 PTZ00129 40S ribosomal protein 41.5 1E+02 0.0022 20.3 6.8 47 113-161 74-131 (149)
174 PF12652 CotJB: CotJB protein; 41.1 20 0.00043 20.7 1.4 36 115-152 3-38 (78)
175 PRK00756 acyltransferase NodA; 41.0 23 0.00049 23.8 1.8 50 97-152 86-136 (196)
176 cd07246 Glo_EDI_BRP_like_8 Thi 41.0 73 0.0016 19.1 4.2 20 141-160 11-31 (122)
177 COG2935 Putative arginyl-tRNA: 40.8 1.4E+02 0.003 21.6 10.3 101 50-157 127-232 (253)
178 COG3543 Uncharacterized conser 40.3 50 0.0011 21.1 3.1 38 103-141 12-49 (135)
179 cd08349 BLMA_like Bleomycin bi 39.6 80 0.0017 18.5 4.3 18 143-160 10-28 (112)
180 PRK09318 bifunctional 3,4-dihy 38.3 96 0.0021 24.1 5.0 48 103-161 309-356 (387)
181 PRK09319 bifunctional 3,4-dihy 37.5 94 0.002 25.4 5.0 47 104-161 333-379 (555)
182 cd07265 2_3_CTD_N N-terminal d 36.7 68 0.0015 19.5 3.6 30 130-160 4-34 (122)
183 COG2514 Predicted ring-cleavag 36.7 60 0.0013 23.6 3.5 43 133-176 171-215 (265)
184 PRK10291 glyoxalase I; Provisi 36.6 46 0.001 20.6 2.8 18 143-160 8-26 (129)
185 PRK14019 bifunctional 3,4-dihy 36.4 79 0.0017 24.4 4.3 45 104-160 318-362 (367)
186 PLN02300 lactoylglutathione ly 35.8 58 0.0013 23.8 3.5 41 118-159 12-53 (286)
187 KOG3014 Protein involved in es 34.7 81 0.0018 22.7 3.8 24 101-124 189-212 (257)
188 COG0623 FabI Enoyl-[acyl-carri 34.7 61 0.0013 23.3 3.2 38 103-141 151-188 (259)
189 cd07253 Glo_EDI_BRP_like_2 Thi 34.5 66 0.0014 19.3 3.2 31 130-161 3-34 (125)
190 PRK14831 undecaprenyl pyrophos 34.5 55 0.0012 23.6 3.1 36 105-142 41-77 (249)
191 COG4837 Uncharacterized protei 34.4 1.1E+02 0.0023 18.4 4.6 45 40-84 44-88 (106)
192 PF04015 DUF362: Domain of unk 34.4 1.1E+02 0.0023 21.1 4.5 49 109-159 17-67 (206)
193 COG2266 GTP:adenosylcobinamide 34.3 98 0.0021 21.1 4.0 46 113-161 26-71 (177)
194 COG1724 Predicted RNA binding 33.9 89 0.0019 17.4 3.2 21 143-163 10-30 (66)
195 cd07244 FosA FosA, a Fosfomyci 33.5 1.1E+02 0.0025 18.5 4.4 30 131-161 2-32 (121)
196 cd08348 BphC2-C3-RGP6_C_like T 33.3 1.2E+02 0.0026 18.7 5.6 28 133-161 4-32 (134)
197 TIGR02990 ectoine_eutA ectoine 33.3 1.2E+02 0.0027 21.7 4.7 40 118-159 109-151 (239)
198 PRK14968 putative methyltransf 33.1 1.3E+02 0.0028 19.9 4.8 45 115-161 129-173 (188)
199 PLN02831 Bifunctional GTP cycl 32.3 1.3E+02 0.0027 24.0 4.9 47 104-161 363-409 (450)
200 TIGR03645 glyox_marine lactoyl 32.3 76 0.0016 20.9 3.4 27 130-157 4-31 (162)
201 PRK12485 bifunctional 3,4-dihy 32.2 99 0.0021 23.9 4.2 28 130-160 338-365 (369)
202 cd04266 DUF619-NAGS-FABP DUF61 32.1 1.3E+02 0.0028 18.7 7.7 61 77-144 17-83 (108)
203 cd07242 Glo_EDI_BRP_like_6 Thi 31.6 1.1E+02 0.0024 18.6 3.9 29 131-160 2-34 (128)
204 cd08347 PcpA_C_like C-terminal 30.9 1.5E+02 0.0032 19.4 4.6 30 131-161 2-32 (157)
205 cd07264 Glo_EDI_BRP_like_15 Th 30.9 93 0.002 18.8 3.5 16 143-158 12-28 (125)
206 cd07243 2_3_CTD_C C-terminal d 30.5 1.2E+02 0.0025 19.4 3.9 29 130-159 6-35 (143)
207 KOG1472 Histone acetyltransfer 30.5 13 0.00028 31.0 -0.6 88 70-162 420-508 (720)
208 PRK13656 trans-2-enoyl-CoA red 30.5 2.2E+02 0.0049 22.3 5.8 68 55-139 199-268 (398)
209 cd07263 Glo_EDI_BRP_like_16 Th 30.4 58 0.0013 19.3 2.5 18 143-160 10-28 (119)
210 PRK09311 bifunctional 3,4-dihy 30.3 1.4E+02 0.0031 23.3 4.9 46 104-160 329-374 (402)
211 cd08361 PpCmtC_N N-terminal do 30.3 1.4E+02 0.0029 18.4 4.3 28 131-159 7-35 (124)
212 TIGR00055 uppS undecaprenyl di 29.7 79 0.0017 22.5 3.2 35 105-141 20-54 (226)
213 cd07266 HPCD_N_class_II N-term 29.6 1E+02 0.0022 18.6 3.5 30 130-160 4-34 (121)
214 PRK14837 undecaprenyl pyrophos 29.4 79 0.0017 22.6 3.1 35 105-141 27-61 (230)
215 cd08352 Glo_EDI_BRP_like_1 Thi 29.4 1.2E+02 0.0025 18.2 3.8 29 130-159 3-32 (125)
216 PRK04531 acetylglutamate kinas 29.2 2.8E+02 0.0061 21.7 8.8 57 77-144 295-352 (398)
217 PF01255 Prenyltransf: Putativ 28.7 64 0.0014 22.8 2.6 34 106-141 16-49 (223)
218 PF06399 GFRP: GTP cyclohydrol 28.7 67 0.0015 18.6 2.2 45 114-159 25-69 (83)
219 cd08364 FosX FosX, a fosfomyci 28.6 1.3E+02 0.0027 18.8 3.8 29 130-159 4-33 (131)
220 cd00641 GTP_cyclohydro2 GTP cy 28.6 1.7E+02 0.0037 20.1 4.6 46 104-160 123-168 (193)
221 COG0022 AcoB Pyruvate/2-oxoglu 28.1 88 0.0019 23.5 3.2 35 101-136 256-290 (324)
222 PRK08815 GTP cyclohydrolase; P 27.9 1.7E+02 0.0037 22.7 4.9 48 103-161 294-341 (375)
223 cd07241 Glo_EDI_BRP_like_3 Thi 27.7 1.3E+02 0.0029 17.9 3.8 25 133-158 4-29 (125)
224 cd04883 ACT_AcuB C-terminal AC 27.5 1.1E+02 0.0024 16.5 3.9 28 131-158 42-70 (72)
225 cd07252 BphC1-RGP6_N_like N-te 27.5 94 0.002 18.9 3.1 28 131-159 3-31 (120)
226 cd00475 CIS_IPPS Cis (Z)-Isopr 27.1 93 0.002 22.0 3.2 35 105-141 21-55 (221)
227 PRK13913 3-methyladenine DNA g 27.1 62 0.0013 22.9 2.3 38 110-156 127-164 (218)
228 PF14696 Glyoxalase_5: Hydroxy 27.0 28 0.00061 22.6 0.6 31 130-161 9-39 (139)
229 cd08359 Glo_EDI_BRP_like_22 Th 26.9 1.5E+02 0.0032 17.7 3.9 17 143-159 13-30 (119)
230 PRK14842 undecaprenyl pyrophos 26.4 1E+02 0.0022 22.2 3.3 35 105-141 29-63 (241)
231 PF12162 STAT1_TAZ2bind: STAT1 26.2 27 0.00058 14.8 0.2 15 22-36 7-21 (23)
232 cd07237 BphC1-RGP6_C_like C-te 25.7 1.6E+02 0.0034 19.1 4.0 29 130-159 9-38 (154)
233 PRK14832 undecaprenyl pyrophos 25.3 92 0.002 22.6 2.9 35 105-141 39-73 (253)
234 KOG3285 Spindle assembly check 25.2 1.7E+02 0.0037 20.0 3.9 60 97-160 48-107 (203)
235 cd08355 Glo_EDI_BRP_like_14 Th 25.2 1.1E+02 0.0023 18.6 3.0 20 141-160 9-29 (122)
236 PF01136 Peptidase_U32: Peptid 25.1 1.6E+02 0.0035 20.6 4.2 22 138-159 45-66 (233)
237 PRK13886 conjugal transfer pro 25.1 1.7E+02 0.0036 21.1 4.2 45 110-156 12-56 (241)
238 PRK14840 undecaprenyl pyrophos 24.6 1E+02 0.0022 22.3 3.0 35 105-141 43-77 (250)
239 PRK14833 undecaprenyl pyrophos 24.5 1.1E+02 0.0024 21.9 3.2 35 105-141 25-59 (233)
240 cd06587 Glo_EDI_BRP_like This 24.5 1.1E+02 0.0024 17.4 2.9 21 141-161 8-29 (112)
241 PRK14841 undecaprenyl pyrophos 24.4 1.1E+02 0.0024 21.9 3.2 35 105-141 24-58 (233)
242 PF10566 Glyco_hydro_97: Glyco 24.3 1.7E+02 0.0036 21.6 4.1 39 115-156 73-122 (273)
243 cd07255 Glo_EDI_BRP_like_12 Th 24.1 1.7E+02 0.0038 17.6 5.6 34 131-165 3-37 (125)
244 PRK11478 putative lyase; Provi 23.8 1.1E+02 0.0024 18.6 2.9 28 130-158 6-34 (129)
245 PTZ00349 dehydrodolichyl dipho 23.5 1.1E+02 0.0023 23.1 3.1 35 105-141 40-74 (322)
246 PRK10240 undecaprenyl pyrophos 23.5 1E+02 0.0022 22.0 2.8 35 105-141 14-48 (229)
247 PRK09607 rps11p 30S ribosomal 23.5 2.2E+02 0.0047 18.4 6.6 47 113-161 55-112 (132)
248 COG0473 LeuB Isocitrate/isopro 23.5 1E+02 0.0023 23.4 3.0 44 108-154 10-53 (348)
249 PF00571 CBS: CBS domain CBS d 23.5 89 0.0019 15.8 2.1 33 52-87 16-49 (57)
250 KOG0139 Short-chain acyl-CoA d 23.5 1.8E+02 0.0038 22.4 4.1 56 97-155 81-136 (398)
251 PRK14829 undecaprenyl pyrophos 23.2 1.1E+02 0.0023 22.1 2.9 33 105-139 35-67 (243)
252 PRK14834 undecaprenyl pyrophos 23.2 1.3E+02 0.0029 21.8 3.4 35 105-141 35-69 (249)
253 PRK14830 undecaprenyl pyrophos 23.2 2.2E+02 0.0047 20.7 4.5 32 108-141 46-77 (251)
254 TIGR00068 glyox_I lactoylgluta 23.1 1.9E+02 0.0042 18.4 4.0 29 130-159 17-46 (150)
255 PF00903 Glyoxalase: Glyoxalas 23.0 1.8E+02 0.0039 17.3 6.5 30 131-161 2-32 (128)
256 cd07256 HPCD_C_class_II C-term 22.8 1.6E+02 0.0035 19.2 3.6 28 130-158 3-31 (161)
257 cd08357 Glo_EDI_BRP_like_18 Th 22.8 90 0.002 18.8 2.3 18 142-159 10-28 (125)
258 cd08354 Glo_EDI_BRP_like_13 Th 22.5 1.7E+02 0.0037 17.4 3.6 17 142-158 11-28 (122)
259 COG0346 GloA Lactoylglutathion 22.3 1.6E+02 0.0034 17.4 3.4 30 131-161 3-33 (138)
260 cd07249 MMCE Methylmalonyl-CoA 22.3 1.1E+02 0.0023 18.5 2.6 26 133-159 3-29 (128)
261 cd07262 Glo_EDI_BRP_like_19 Th 22.2 1.6E+02 0.0034 17.8 3.3 26 134-160 4-33 (123)
262 COG5270 PUA domain (predicted 22.0 1.4E+02 0.003 20.6 3.0 15 76-90 170-184 (202)
263 PF11633 SUD-M: Single-strande 21.8 2.4E+02 0.0052 18.3 4.3 40 114-158 22-61 (142)
264 TIGR03628 arch_S11P archaeal r 21.8 2.2E+02 0.0047 17.9 6.6 46 113-160 48-104 (114)
265 PRK06724 hypothetical protein; 21.7 2.2E+02 0.0047 17.8 4.0 27 130-157 7-37 (128)
266 cd09013 BphC-JF8_N_like N-term 21.7 2E+02 0.0043 17.3 4.3 31 130-161 6-37 (121)
267 PF08901 DUF1847: Protein of u 21.6 1.9E+02 0.0041 19.3 3.5 41 117-159 43-87 (157)
268 PF13592 HTH_33: Winged helix- 21.6 1.4E+02 0.003 15.9 2.6 33 119-159 9-41 (60)
269 PF14506 CppA_N: CppA N-termin 21.3 1.4E+02 0.003 19.0 2.8 25 144-168 13-38 (125)
270 PRK14839 undecaprenyl pyrophos 21.2 1.3E+02 0.0029 21.6 3.0 35 105-141 30-64 (239)
271 PRK05031 tRNA (uracil-5-)-meth 21.1 3.6E+02 0.0078 20.7 5.6 54 101-164 292-346 (362)
272 PF08973 TM1506: Domain of unk 21.0 2.5E+02 0.0054 18.2 4.0 40 112-159 55-94 (134)
273 cd08360 MhqB_like_C C-terminal 20.6 2.1E+02 0.0046 17.8 3.8 29 131-160 4-33 (134)
274 PLN02367 lactoylglutathione ly 20.6 2.8E+02 0.006 19.9 4.5 26 134-160 79-105 (233)
275 PRK14835 undecaprenyl pyrophos 20.4 1.3E+02 0.0028 22.2 2.9 34 106-141 63-96 (275)
276 PF00633 HHH: Helix-hairpin-he 20.1 88 0.0019 14.1 1.4 13 110-122 17-29 (30)
No 1
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.98 E-value=3.5e-30 Score=174.19 Aligned_cols=170 Identities=21% Similarity=0.259 Sum_probs=141.1
Q ss_pred cccCceecCceEeeeCCccCHHHHHHHcCCccc--eeccCC-CCCCChHHHHHHHHHhcC----CCCceEEEeECCeeEE
Q 047585 10 MKNGFVELSHISLRPLELSDIDDFMVWVSDPKV--ARFCPW-ESYTNKEDGINYIKTKVP----QHPWFRAICVNNRPVG 82 (185)
Q Consensus 10 ~~~~~~~~~~i~ir~~~~~D~~~l~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~iG 82 (185)
|..+.++++++.|||++++|++.++.++.++.. ..+..+ ....+.++.+++++.... .....+++..+|++||
T Consensus 1 ~~~~~~~t~rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG 80 (179)
T PRK10151 1 MTEIIPVSESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIG 80 (179)
T ss_pred CeEEEEeCCcEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEE
Confidence 344567899999999999999999999865432 223333 234577888888886432 1223566667999999
Q ss_pred EEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEee
Q 047585 83 ATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGK 162 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~ 162 (185)
++.+...+..... +++|++|.|+|||+|+|++++..+++++++.. +++++.+.+.+.|.+|+++++|+||+.+|+.++
T Consensus 81 ~~~l~~~~~~~~~-~~ig~~i~~~~~g~G~~tea~~~l~~~~~~~~-~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~ 158 (179)
T PRK10151 81 VLSFNRIEPLNKT-AYIGYWLDESHQGQGIISQALQALIHHYAQSG-ELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQ 158 (179)
T ss_pred EEEEEeeccCCCc-eEEEEEEChhhcCCcHHHHHHHHHHHHHHhhC-CccEEEEEEcCCCHHHHHHHHHCCCEEEeEecc
Confidence 9999877554333 89999999999999999999999999999887 999999999999999999999999999999999
Q ss_pred EEEECCeeeeeEEEEeccC
Q 047585 163 YFIMKGSTKDMVVFSLLST 181 (185)
Q Consensus 163 ~~~~~g~~~d~~~~~~~~~ 181 (185)
....+|++.|.++|+++..
T Consensus 159 ~~~~~g~~~D~~~~~~~~~ 177 (179)
T PRK10151 159 AEYLNGAYDDVNLYARIID 177 (179)
T ss_pred ceEECCEEEEEEEEEEeec
Confidence 9989999999999999764
No 2
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.97 E-value=3.6e-30 Score=175.17 Aligned_cols=168 Identities=22% Similarity=0.289 Sum_probs=139.0
Q ss_pred eecCceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhc-CCCCceEEEeECCeeEEEEEeeeCCCCC
Q 047585 15 VELSHISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKV-PQHPWFRAICVNNRPVGATSVRPNSGND 93 (185)
Q Consensus 15 ~~~~~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iG~~~~~~~~~~~ 93 (185)
+++.++.|||++++|++.+.++..++....+....+.....+...++.... ......+++..+|++||++.+...+...
T Consensus 2 ~~~~~l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~~ 81 (186)
T PRK15130 2 PSAHSVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVH 81 (186)
T ss_pred CCCCeeEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCCC
Confidence 577889999999999999999998876555433233333344444555443 3334566776799999999998766433
Q ss_pred CceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeeee
Q 047585 94 MCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKDM 173 (185)
Q Consensus 94 ~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~ 173 (185)
.. ++++++|+|+|||+|+|++++..+++++++.+ +++++.+.|...|.+|+++|+|+||+.++..+++...+|++.|.
T Consensus 82 ~~-~~~~~~v~~~~~g~G~g~~l~~~l~~~~~~~~-~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~d~ 159 (186)
T PRK15130 82 RR-AEFQIIISPEYQGKGLATRAAKLAMDYGFTVL-NLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYRNT 159 (186)
T ss_pred Ce-EEEEEEECHHHcCCCHHHHHHHHHHHHHhhcC-CceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEEEE
Confidence 33 78899999999999999999999999999887 99999999999999999999999999999999888889999999
Q ss_pred EEEEeccCCCC
Q 047585 174 VVFSLLSTDPK 184 (185)
Q Consensus 174 ~~~~~~~~~~~ 184 (185)
++|++++++|.
T Consensus 160 ~~~~~~~~~~~ 170 (186)
T PRK15130 160 IRMCIFQHQYL 170 (186)
T ss_pred EEEEeeHHHHH
Confidence 99999999884
No 3
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.97 E-value=1.5e-29 Score=173.20 Aligned_cols=172 Identities=17% Similarity=0.267 Sum_probs=135.6
Q ss_pred cCceecCceEeeeCCccCHHHHHHHcCCccc--eeccCCCC--CCChHHH---HHHHHHhcCCC-CceEEEeE--CCeeE
Q 047585 12 NGFVELSHISLRPLELSDIDDFMVWVSDPKV--ARFCPWES--YTNKEDG---INYIKTKVPQH-PWFRAICV--NNRPV 81 (185)
Q Consensus 12 ~~~~~~~~i~ir~~~~~D~~~l~~~~~~~~~--~~~~~~~~--~~~~~~~---~~~~~~~~~~~-~~~~~~~~--~~~~i 81 (185)
.+.+.++++.||+++++|++.++++++++.. ..+.+... ....+.. ..++......+ ...+++.. ++++|
T Consensus 10 ~~~l~t~rl~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i 89 (194)
T PRK10809 10 KVRLTTDRLVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEII 89 (194)
T ss_pred ceeeccCcEEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEE
Confidence 4568899999999999999999999886421 12222211 1112222 23444433333 34556654 67999
Q ss_pred EEEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 82 GATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 82 G~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
|.+.+..........+++|++|.|+|||+|+|++++..++++++..+ +++++.+.|.+.|.+|+++|+|+||+.++..+
T Consensus 90 G~i~l~~~~~~~~~~~eig~~i~~~~~G~G~~~ea~~~ll~~~~~~l-~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~~ 168 (194)
T PRK10809 90 GVANFSNVVRGSFHACYLGYSLGQKWQGQGLMFEALQAAIRYMQRQQ-HMHRIMANYMPHNKRSGDLLARLGFEKEGYAK 168 (194)
T ss_pred EEEEEEeecCCCeeeEEEEEEECHHHcCCCHHHHHHHHHHHHHHhcC-CceEEEEEeeCCCHHHHHHHHHCCCcEEeeec
Confidence 99999876542333489999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred eEEEECCeeeeeEEEEeccCCCC
Q 047585 162 KYFIMKGSTKDMVVFSLLSTDPK 184 (185)
Q Consensus 162 ~~~~~~g~~~d~~~~~~~~~~~~ 184 (185)
+....+|++.|.++|++++++|+
T Consensus 169 ~~~~~~g~~~d~~~~~~~~~~~~ 191 (194)
T PRK10809 169 DYLLIDGQWRDHVLTALTTPEWT 191 (194)
T ss_pred cccccCCeEEEEEEeeeehhhhh
Confidence 88888999999999999999985
No 4
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.96 E-value=6e-27 Score=155.92 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=125.1
Q ss_pred ceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCC-CCcee
Q 047585 19 HISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGN-DMCRA 97 (185)
Q Consensus 19 ~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~-~~~~~ 97 (185)
++.|||++.+|++.+.++..++.........+..+.+.....+.. ......+++..+|++||++.+...... ..+..
T Consensus 3 ~i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~ 80 (162)
T PRK10140 3 EIVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLAD--RPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVA 80 (162)
T ss_pred ccEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhc--CCCcEEEEEEECCEEEEEEEEecccccccceEE
Confidence 589999999999999999987655433222233344443333322 122244555568999999999865322 22336
Q ss_pred eeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeeeeEEEE
Q 047585 98 ELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKDMVVFS 177 (185)
Q Consensus 98 ~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~~~ 177 (185)
+++++|.|+|||+|+|++++..+++++++.. +++++.+.+.+.|.+|++||+|+||+..|..+.+...+|++.|.++|+
T Consensus 81 ~~~~~v~p~~rg~Gig~~ll~~l~~~~~~~~-~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~~~~d~~~~~ 159 (162)
T PRK10140 81 DFGICVDSRWKNRGVASALMREMIEMCDNWL-RVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMA 159 (162)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHHHHHhhC-CccEEEEEEEcCCHHHHHHHHHCCCEEEeecccceeeCCeEEEEEEEE
Confidence 7899999999999999999999999999866 999999999999999999999999999999998888889999999999
Q ss_pred ecc
Q 047585 178 LLS 180 (185)
Q Consensus 178 ~~~ 180 (185)
+.+
T Consensus 160 ~~~ 162 (162)
T PRK10140 160 RVK 162 (162)
T ss_pred ecC
Confidence 764
No 5
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.95 E-value=6.2e-27 Score=154.95 Aligned_cols=154 Identities=19% Similarity=0.305 Sum_probs=132.7
Q ss_pred EeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCC-ceEEEeECCeeEEEEEeeeCCCCCCceeee
Q 047585 21 SLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHP-WFRAICVNNRPVGATSVRPNSGNDMCRAEL 99 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ 99 (185)
.|||++++|++.+.+|.+++.+..+.......+.++...|++....... ..+++..+|++||++.+...+..... .++
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~~~-~~~ 80 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVHKS-AFW 80 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhhCe-EEE
Confidence 4799999999999999999988777554555677888888888766433 45566669999999999877643333 788
Q ss_pred eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeeeeEEEE
Q 047585 100 GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKDMVVFS 177 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~~~ 177 (185)
|+++.|++| +|+|++++..+++++++.+ +++++.+.|.+.|.+|++||+|+||+..+..+++...+|++.|.++|.
T Consensus 81 g~~~~~~~~-~G~g~~~~~~~~~~a~~~~-~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~~~g~~~d~~~~~ 156 (156)
T TIGR03585 81 GIYANPFCK-PGVGSVLEEAALEYAFEHL-GLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYYDVLLMY 156 (156)
T ss_pred EEEeChhhh-cCchHHHHHHHHHHHHhhC-CeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhheeECCeEEEEEEeC
Confidence 988999999 9999999999999999887 999999999999999999999999999999999998999999999873
No 6
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.95 E-value=2.4e-26 Score=152.00 Aligned_cols=152 Identities=21% Similarity=0.355 Sum_probs=123.7
Q ss_pred eeeCCccCHHHHHHHcCCccceeccCCC-CCCChHHHHHHHHHhc-CCCCceEEEeE-CCeeEEEEEeeeCCCCCCceee
Q 047585 22 LRPLELSDIDDFMVWVSDPKVARFCPWE-SYTNKEDGINYIKTKV-PQHPWFRAICV-NNRPVGATSVRPNSGNDMCRAE 98 (185)
Q Consensus 22 ir~~~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~iG~~~~~~~~~~~~~~~~ 98 (185)
|||++++|++.+..|++++.......+. ...+.+....+++... .+....+++.. +|++||++.+...+..... ++
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~-~~ 79 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNHT-AE 79 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTTE-EE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCCE-EE
Confidence 7999999999999999765443443332 2356777888888773 34456677776 9999999999988774444 89
Q ss_pred eeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeeeeEE
Q 047585 99 LGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKDMVV 175 (185)
Q Consensus 99 ~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~ 175 (185)
++++|.|++|++|+|+.++..++++||... |++++.+.|.+.|.+|++||+++||+.+|+.++....+|++.|+++
T Consensus 80 ~~~~v~~~~~~~gig~~l~~~l~~~af~~~-~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~~~~~y~D~~~ 155 (155)
T PF13420_consen 80 LSIYVSPDYRGKGIGRKLLDELIEYAFKEL-GIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIFINGKYYDVVW 155 (155)
T ss_dssp EEEEEEGGGTTSSHHHHHHHHHHHHH-HHT-T-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEEETTEEEEEEE
T ss_pred EeeEEChhHCCCcHHHHHHHHHHHHhhhcc-CeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEEECCeEEEeEC
Confidence 999999999999999999999999997776 9999999999999999999999999999999999999999999864
No 7
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.8e-25 Score=150.23 Aligned_cols=170 Identities=32% Similarity=0.461 Sum_probs=138.6
Q ss_pred eecCceEeeeCCccCHHHHHHHcCCccceeccCCCC----CCChHHHHHHHHHhcCCC-CceEEEeE--C--CeeEEEEE
Q 047585 15 VELSHISLRPLELSDIDDFMVWVSDPKVARFCPWES----YTNKEDGINYIKTKVPQH-PWFRAICV--N--NRPVGATS 85 (185)
Q Consensus 15 ~~~~~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~--~--~~~iG~~~ 85 (185)
+.+.++.+|++..+|+..+..+..++....+..... ....+....++....... ...+.+.. + +++||.+.
T Consensus 5 ~~~~r~~lr~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~ 84 (187)
T COG1670 5 LLTLRLLLREVDLEDLELLAEWANDPEVMLFWWLPPPLTPPTSDEELLRLLAEAWEDLGGGAFAIELKATGDGELIGVIG 84 (187)
T ss_pred cccceeEeecCcHhHHHHHHHHhcChHhhcccCCCCCcccccchHHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEEEE
Confidence 456678889999999999998887776665544432 444555556665544433 34444443 3 48999999
Q ss_pred eeeCCC-CCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEE
Q 047585 86 VRPNSG-NDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYF 164 (185)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~ 164 (185)
+...+. .....+++|+++.|+|||+|+|++++.++++++|..+ +++++.+.|.+.|.+|+++++|+||+.++..+...
T Consensus 85 ~~~~~~~~~~~~~~ig~~l~~~~~g~G~~tea~~~~l~~~f~~~-~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~~~~ 163 (187)
T COG1670 85 LSDIDRAANGDLAEIGYWLDPEYWGKGYATEALRALLDYAFEEL-GLHRIEATVDPENEASIRVYEKLGFRLEGELRQHE 163 (187)
T ss_pred EEEeccccccceEEEEEEEChHHhcCchHHHHHHHHHHHhhhhc-CceEEEEEecCCCHHHHHHHHHcCChhhhhhhhce
Confidence 998773 2333389999999999999999999999999999987 99999999999999999999999999999999988
Q ss_pred EECCeeeeeEEEEeccCCCCC
Q 047585 165 IMKGSTKDMVVFSLLSTDPKT 185 (185)
Q Consensus 165 ~~~g~~~d~~~~~~~~~~~~~ 185 (185)
+.+|.+.|.+.|++++++|.+
T Consensus 164 ~~~g~~~d~~~~~~~~~e~~~ 184 (187)
T COG1670 164 FIKGRWRDTVLYSLLRDEWEA 184 (187)
T ss_pred eeCCeeeeEEEEEEechhhhh
Confidence 889999999999999999974
No 8
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.93 E-value=8.9e-25 Score=142.36 Aligned_cols=135 Identities=33% Similarity=0.580 Sum_probs=109.1
Q ss_pred ceEeeeCCccCHHHHHHHcCCccceeccCCCCC-CChHHHHHHHHHhcC----CCCceEEEeE--CCeeEEEEEeeeCCC
Q 047585 19 HISLRPLELSDIDDFMVWVSDPKVARFCPWESY-TNKEDGINYIKTKVP----QHPWFRAICV--NNRPVGATSVRPNSG 91 (185)
Q Consensus 19 ~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~iG~~~~~~~~~ 91 (185)
+++|||++++|++.+.++.+++.+..+.++.+. .+.++...++..... .....+++.. ++++||++.+...+.
T Consensus 1 Rl~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~ 80 (142)
T PF13302_consen 1 RLTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDK 80 (142)
T ss_dssp SEEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEET
T ss_pred CEEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeeccc
Confidence 589999999999999999998998888766443 488888888874211 1134455555 458999999965543
Q ss_pred CCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCe
Q 047585 92 NDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFK 155 (185)
Q Consensus 92 ~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~ 155 (185)
.... +++|++|.|++||+|+|++++..+++++++.+ +++++.+.+.++|.+|+++++|+||+
T Consensus 81 ~~~~-~eig~~i~~~~~g~G~~~~~~~~~~~~~~~~~-~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 81 NNNW-AEIGYWIGPDYRGKGYGTEALKLLLDWAFEEL-GLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TTTE-EEEEEEEEGGGTTSSHHHHHHHHHHHHHHHTS-TSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CCCc-cccccchhHHHHhhhHHHHHHHHHHHHHHhcC-CcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 3333 99999999999999999999999999999888 99999999999999999999999996
No 9
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=8.9e-23 Score=133.20 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=135.5
Q ss_pred eEeeeCCccCHHHHHHHcCCccceeccCC-CCCCChHHHHHHHHHhcCCCCceEEEeE-CCeeEEEEEeeeCCCCCC--c
Q 047585 20 ISLRPLELSDIDDFMVWVSDPKVARFCPW-ESYTNKEDGINYIKTKVPQHPWFRAICV-NNRPVGATSVRPNSGNDM--C 95 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iG~~~~~~~~~~~~--~ 95 (185)
+.||+.+.+|++.|..+++..-......+ ..+++.+...+|+.......-..+++.. +|+++|++.+........ +
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~ 81 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRH 81 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccce
Confidence 68999999999999999987544433223 4556888888999887775533344433 599999999999876543 3
Q ss_pred eeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeeeeEE
Q 047585 96 RAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKDMVV 175 (185)
Q Consensus 96 ~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~ 175 (185)
..+.+++|+|+.||+|+|+++++.++..+... |+..+...+..+|.+|+++.+++||+..|..++.-...|++.|..+
T Consensus 82 tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~--g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wld~~~ 159 (169)
T COG1247 82 TVELSIYLDPAARGKGLGKKLLQALITEARAL--GVRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWLDLVL 159 (169)
T ss_pred EEEEEEEECcccccccHHHHHHHHHHHHHHhC--CeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEEeeee
Confidence 37788999999999999999999999999877 9999999999999999999999999999999988777899999999
Q ss_pred EEeccCCCC
Q 047585 176 FSLLSTDPK 184 (185)
Q Consensus 176 ~~~~~~~~~ 184 (185)
+.+.-++.+
T Consensus 160 ~~~~l~~~~ 168 (169)
T COG1247 160 MQLLLEEGR 168 (169)
T ss_pred eehhhcccC
Confidence 998766543
No 10
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.90 E-value=2.3e-22 Score=143.65 Aligned_cols=151 Identities=13% Similarity=0.205 Sum_probs=119.5
Q ss_pred cCceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCce
Q 047585 17 LSHISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCR 96 (185)
Q Consensus 17 ~~~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~ 96 (185)
++.+.||+++++|++.+.+++.+. ....+. +..+ ..++.....+...++++..+|++||++.+..... ...
T Consensus 113 ~~~~~IR~a~~~D~~~l~~L~~~v--~~~~~~-~~~~----~~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~~~-~~~- 183 (266)
T TIGR03827 113 PEGFTLRIATEDDADAMAALYRKV--FPTYPF-PIHD----PAYLLETMKSNVVYFGVEDGGKIIALASAEMDPE-NGN- 183 (266)
T ss_pred CCceEEEECCHHHHHHHHHHHHHH--hccCCC-CccC----HHHHHHHhcCCcEEEEEEECCEEEEEEEEecCCC-CCc-
Confidence 456999999999999999998752 111111 1112 2344444444455566667999999998754332 222
Q ss_pred eeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeeeeEE
Q 047585 97 AELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKDMVV 175 (185)
Q Consensus 97 ~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~ 175 (185)
++++ ++|+|+|||+|+|++|++.+++++++. ++..+.+.+...|.+|+++|+|+||+.+|+.++....+|++.|+.+
T Consensus 184 ~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~--g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~i 261 (266)
T TIGR03827 184 AEMTDFATLPEYRGKGLAKILLAAMEKEMKEK--GIRTAYTIARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMNI 261 (266)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCcEEEeehhhcchhHHHHHHHcCCccccEEeecceecCCccccee
Confidence 6775 789999999999999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 047585 176 FSL 178 (185)
Q Consensus 176 ~~~ 178 (185)
|..
T Consensus 262 ~~k 264 (266)
T TIGR03827 262 WYK 264 (266)
T ss_pred eee
Confidence 875
No 11
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.88 E-value=6.2e-21 Score=124.85 Aligned_cols=143 Identities=13% Similarity=0.207 Sum_probs=108.1
Q ss_pred eEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceeee
Q 047585 20 ISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAEL 99 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ 99 (185)
++||+++.+|++.+.++..++.... + +.+. +... .......+.+..++++||++.+...... . ...
T Consensus 2 ~~iR~~~~~D~~~l~~l~~~~~~~~---~----~~~~---~~~~-~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~-~~~ 67 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQRAHAFP---W----SEKT---FASN-QGERYLNLKLTVNGQMAAFAITQVVLDE--A-TLF 67 (146)
T ss_pred cchhcCChhhhHHHHHHHHhcCCCC---C----CHHH---HHHH-HhcCceEEEEEECCeEEEEEEEEeecCc--e-EEE
Confidence 5799999999999999876543321 1 1221 1111 1112223344568999999998765432 1 334
Q ss_pred eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEE-CCeeeeeEEEEe
Q 047585 100 GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIM-KGSTKDMVVFSL 178 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~-~g~~~d~~~~~~ 178 (185)
.+.|+|+|||+|+|+++++.+++.+++. +++.+.+.+.+.|.+|.+||+|+||+..+..+.+... +| +.|.+.|++
T Consensus 68 ~i~v~~~~rg~G~g~~ll~~~~~~~~~~--~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~-~~d~~~~~~ 144 (146)
T PRK09491 68 NIAVDPDYQRQGLGRALLEHLIDELEKR--GVATLWLEVRASNAAAIALYESLGFNEVTIRRNYYPTADG-REDAIIMAL 144 (146)
T ss_pred EEEECHHHccCCHHHHHHHHHHHHHHHC--CCcEEEEEEccCCHHHHHHHHHcCCEEeeeeeccccCCCC-ceeEEEEec
Confidence 5789999999999999999999999765 9999999999999999999999999999988877654 45 999999987
Q ss_pred c
Q 047585 179 L 179 (185)
Q Consensus 179 ~ 179 (185)
.
T Consensus 145 ~ 145 (146)
T PRK09491 145 P 145 (146)
T ss_pred c
Confidence 4
No 12
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.87 E-value=3.2e-20 Score=122.25 Aligned_cols=137 Identities=18% Similarity=0.297 Sum_probs=99.8
Q ss_pred eeeCC-ccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhc-CCCCceEEEeECCeeEEEEEeeeCCCCC---Cce
Q 047585 22 LRPLE-LSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKV-PQHPWFRAICVNNRPVGATSVRPNSGND---MCR 96 (185)
Q Consensus 22 ir~~~-~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iG~~~~~~~~~~~---~~~ 96 (185)
|||++ .+|++.|.+|++++.+..+... ..+.+....+.+... .+....+++..+|+++|++.+....... ...
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~ 78 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQ--DPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGD 78 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-C--CCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccC--CCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCE
Confidence 79999 9999999999999877766332 223344455555433 2334566666699999999997633221 111
Q ss_pred eeeeE-EECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 97 AELGY-VLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 97 ~~~~~-~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
..++. ++.+++||+|+|+.++..+++++++.. +++++.+.+.++|.+|+++|+|+||+.+|+..
T Consensus 79 ~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~-~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~ 143 (152)
T PF13523_consen 79 RGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDP-GVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFE 143 (152)
T ss_dssp EEEEEEESTGGGTTSSHHHHHHHHHHHHHHTST-T--EEEEEEBTT-HHHHHHHHHTT-EEEEEEE
T ss_pred EEEeeeeechhhcCCCHHHHHHHHHHHHHHhCC-CCCEEEEecCcCCHHHHHHHHHcCCEEeeEEE
Confidence 34443 457999999999999999999999875 89999999999999999999999999999875
No 13
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.86 E-value=1.1e-20 Score=123.32 Aligned_cols=132 Identities=13% Similarity=0.170 Sum_probs=97.5
Q ss_pred CceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHH-HHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCC--
Q 047585 18 SHISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKED-GINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDM-- 94 (185)
Q Consensus 18 ~~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~-- 94 (185)
+.+.||+++++|++.+.+++...... ..+.+. ...+.+....+...++++..+|++||++.+........
T Consensus 2 ~~~~ir~a~~~D~~~l~~l~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~ 74 (144)
T PRK10146 2 PACELRPATQYDTDAVYALICELKQA-------EFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVN 74 (144)
T ss_pred CccEEeeCcHhhHHHHHHHHHHHhcc-------cCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccc
Confidence 46889999999999999987631110 012223 23343333333344555666999999999976432111
Q ss_pred ceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEE
Q 047585 95 CRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREG 158 (185)
Q Consensus 95 ~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~ 158 (185)
..+.+ .++|+|++||+|+|+.++..+++++++. +++.+.+.+...|.+|++||+++||+..+
T Consensus 75 ~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~--~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~ 137 (144)
T PRK10146 75 WIGEIQELVVMPQARGLNVGSKLLAWAEEEARQA--GAEMTELSTNVKRHDAHRFYLREGYEQSH 137 (144)
T ss_pred hhheeheeEECHHHcCCCHHHHHHHHHHHHHHHc--CCcEEEEecCCCchHHHHHHHHcCCchhh
Confidence 11344 5889999999999999999999999887 99999999999999999999999998764
No 14
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.85 E-value=4.6e-20 Score=125.86 Aligned_cols=135 Identities=17% Similarity=0.226 Sum_probs=99.7
Q ss_pred ceEeeeCCccCHHHHHHHcCCccc-eeccCCCCCCChHH----HHHHHHHhcCCC--CceEEEe-ECCeeEEEEEeeeCC
Q 047585 19 HISLRPLELSDIDDFMVWVSDPKV-ARFCPWESYTNKED----GINYIKTKVPQH--PWFRAIC-VNNRPVGATSVRPNS 90 (185)
Q Consensus 19 ~i~ir~~~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~-~~~~~iG~~~~~~~~ 90 (185)
.+.|||++++|++.+.+++.++.. ..+. .+..+++. ...++....... ...+++. .+|++||++.+...+
T Consensus 43 ~~~lR~~~~~D~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~ 120 (191)
T TIGR02382 43 DPGARVATETDIPALRQLASAAFALSRFR--APWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELN 120 (191)
T ss_pred CCcceeCChhhHHHHHHHHHHHhhccccC--CCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecC
Confidence 468999999999999999887532 1121 11112222 334444443322 2223333 378999999998664
Q ss_pred CCCCceeeeeE-EECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 91 GNDMCRAELGY-VLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 91 ~~~~~~~~~~~-~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
.. . ++++. +|+|++||+|+|+++++.+++++++. |+.++.+.|.++|.+|++||+|+||+.+++.
T Consensus 121 ~~--~-~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~--g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~ 186 (191)
T TIGR02382 121 DT--D-ARIGLLAVFPGAQSRGIGAELMQTALNWCYAR--GLTRLRVATQMGNTAALRLYIRSGANIESTA 186 (191)
T ss_pred CC--c-eEEEEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCEEEEEeCCCCHHHHHHHHHcCCccccce
Confidence 32 2 67774 48999999999999999999999865 9999999999999999999999999988864
No 15
>PRK03624 putative acetyltransferase; Provisional
Probab=99.85 E-value=8.6e-20 Score=118.36 Aligned_cols=129 Identities=16% Similarity=0.254 Sum_probs=95.4
Q ss_pred ceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcC-CCCceEEEeECCeeEEEEEeeeCCCCCCcee
Q 047585 19 HISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVP-QHPWFRAICVNNRPVGATSVRPNSGNDMCRA 97 (185)
Q Consensus 19 ~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~ 97 (185)
.+.||+++++|++.+.+++.+..... ++ ... ...+..... +...++++..++++||++.+..... .. .
T Consensus 2 ~~~ir~~~~~d~~~i~~l~~~~~~~~--~~---~~~---~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~--~~-~ 70 (140)
T PRK03624 2 AMEIRVFRQADFEAVIALWERCDLTR--PW---NDP---EMDIERKLNHDPSLFLVAEVGGEVVGTVMGGYDGH--RG-W 70 (140)
T ss_pred ceEEEEcccccHHHHHHHHHhcCCCc--ch---hhH---HHHHHHHhcCCCceEEEEEcCCcEEEEEEeeccCC--Cc-e
Confidence 47899999999999999987652111 11 011 112222222 2334555556899999998764321 11 3
Q ss_pred eeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 98 ELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 98 ~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
...++|+|+|||+|+|++++..+++++++. +++.+.+.+.+.|.+++++|+|+||+..+..
T Consensus 71 i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~--~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~ 131 (140)
T PRK03624 71 AYYLAVHPDFRGRGIGRALVARLEKKLIAR--GCPKINLQVREDNDAVLGFYEALGYEEQDRI 131 (140)
T ss_pred EEEEEECHHHhCCCHHHHHHHHHHHHHHHC--CCCEEEEEEecCcHHHHHHHHHcCCccccEE
Confidence 346779999999999999999999999876 9999999999999999999999999987753
No 16
>PRK10514 putative acetyltransferase; Provisional
Probab=99.84 E-value=7.9e-20 Score=119.48 Aligned_cols=142 Identities=16% Similarity=0.192 Sum_probs=101.4
Q ss_pred eEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceeee
Q 047585 20 ISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAEL 99 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ 99 (185)
+.||+++++|++.+.+++.+..... ..+....+.+....++.........++++..++++||++.+... ..-
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~-------~~~ 73 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDAT-HDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSGG-------HME 73 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHh-CcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEecC-------cEe
Confidence 5789999999999999887532211 11112234555556666554433333333348999999988532 122
Q ss_pred eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeeeeEEEEe
Q 047585 100 GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKDMVVFSL 178 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~~~~ 178 (185)
+++|+|+|||+|+|+.+++.+++.+ +++.+.+...|.+|++||+|+||+..++... ..+|...+.++|+.
T Consensus 74 ~~~v~p~~rgkGig~~Ll~~~~~~~-------~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~~--~~~~~~~~~~~~~~ 143 (145)
T PRK10514 74 ALFVDPDVRGCGVGRMLVEHALSLH-------PELTTDVNEQNEQAVGFYKKMGFKVTGRSEV--DDQGRPYPLLHLAY 143 (145)
T ss_pred EEEECHHhccCCHHHHHHHHHHHhc-------cccEEEeecCCHHHHHHHHHCCCEEeccccc--CCCCCccceEEEEe
Confidence 6889999999999998888887642 3467888999999999999999999987663 35788888888864
No 17
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.84 E-value=1.3e-19 Score=119.13 Aligned_cols=132 Identities=18% Similarity=0.165 Sum_probs=96.6
Q ss_pred cCceEeeeCCccCHH-HHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCC-C-ceEEEeE--CCeeEEEEEeeeCCC
Q 047585 17 LSHISLRPLELSDID-DFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQH-P-WFRAICV--NNRPVGATSVRPNSG 91 (185)
Q Consensus 17 ~~~i~ir~~~~~D~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~--~~~~iG~~~~~~~~~ 91 (185)
+.++.||+++.+|.+ .+..++.+.. .....+.+....++....... . ..+++.. ++++||++.+.....
T Consensus 4 ~~~~~ir~~~~~D~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~ 77 (150)
T PLN02706 4 GEKFKVRRLEISDKSKGFLELLQQLT------VVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERK 77 (150)
T ss_pred CCceEEeEhhhcccchHHHHHHHhcc------CCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEee
Confidence 467899999999998 4777775421 223456777778877655422 2 3334444 589999998853221
Q ss_pred CCCceeeee----EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 92 NDMCRAELG----YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 92 ~~~~~~~~~----~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
......+.+ ++|+|+|||+|+|++++..+++++++. +++++.+.+.+.|. +||+|+||+.++.
T Consensus 78 ~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~--g~~~i~l~~~~~N~---~~y~k~GF~~~g~ 144 (150)
T PLN02706 78 FIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSA--GCYKVILDCSEENK---AFYEKCGYVRKEI 144 (150)
T ss_pred cccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCEEEEEeccccH---HHHHHCcCEEehh
Confidence 111112333 789999999999999999999999875 99999999999995 5999999998874
No 18
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.84 E-value=1.1e-19 Score=120.19 Aligned_cols=146 Identities=16% Similarity=0.122 Sum_probs=99.4
Q ss_pred eeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeE-CCeeEEEEEeeeCCCCCCceeeee
Q 047585 22 LRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICV-NNRPVGATSVRPNSGNDMCRAELG 100 (185)
Q Consensus 22 ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iG~~~~~~~~~~~~~~~~~~ 100 (185)
||+++.+|++.+.++..+..... . +....+...........+++.. ++++||++.+..............
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~---~------~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~ 71 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLD---L------NSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQ 71 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCC---c------ccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEE
Confidence 68999999999999987632111 0 1111111111111233444443 679999987654443222212336
Q ss_pred EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEE------CCeeeeeE
Q 047585 101 YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIM------KGSTKDMV 174 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~------~g~~~d~~ 174 (185)
++|+|++||+|+|+++++.++++++.. ++..+.+.|.+.|.+|++||+|+||+......+.-+. +|...|.+
T Consensus 72 l~V~p~~rg~GiG~~L~~~l~~~a~~~--~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (157)
T TIGR02406 72 VAVDPRARGKGLARRLLEALLERVACE--RVRHLETTITPDNQASRALFKALARRRGVHLIEEPFFDGELFPGGAHDDEW 149 (157)
T ss_pred EEEChHhccCcHHHHHHHHHHHHHHhC--CCCEEEEEEcCCCHHHHHHHHHhCcccCCCeEeecccccccCccCCCChhH
Confidence 779999999999999999999999887 8999999999999999999999999876665544333 34445555
Q ss_pred EEEe
Q 047585 175 VFSL 178 (185)
Q Consensus 175 ~~~~ 178 (185)
+.++
T Consensus 150 ~~~~ 153 (157)
T TIGR02406 150 LLRI 153 (157)
T ss_pred eeec
Confidence 5443
No 19
>PTZ00330 acetyltransferase; Provisional
Probab=99.83 E-value=9e-19 Score=114.68 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=93.2
Q ss_pred ceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCC-ceEEE-eECCeeEEEEEeeeCCCCCC--
Q 047585 19 HISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHP-WFRAI-CVNNRPVGATSVRPNSGNDM-- 94 (185)
Q Consensus 19 ~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~iG~~~~~~~~~~~~-- 94 (185)
++.||+++++|++.+.+++.... ..+..+.+....++........ ..+++ ..+|++||++.+...+....
T Consensus 6 ~~~ir~~~~~D~~~i~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~ 79 (147)
T PTZ00330 6 SLELRDLEEGDLGSVLELLSHLT------SAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGG 79 (147)
T ss_pred eEEEEEcccccHHHHHHHHHHhc------CCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCC
Confidence 48899999999999999875421 1222345555566554332222 22233 34889999999875432211
Q ss_pred -ceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 95 -CRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 95 -~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
....+ .++|+|+|||+|+|+.+++.+++++++. ++..+.+.+ |.+|++||+++||+....
T Consensus 80 ~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~--~~~~l~l~~---n~~a~~~y~k~GF~~~~~ 141 (147)
T PTZ00330 80 KCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSS--GCYKVILDC---TEDMVAFYKKLGFRACER 141 (147)
T ss_pred CceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEec---ChHHHHHHHHCCCEEece
Confidence 11233 4889999999999999999999999876 888887764 889999999999998764
No 20
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.82 E-value=6.1e-19 Score=120.66 Aligned_cols=136 Identities=17% Similarity=0.201 Sum_probs=99.1
Q ss_pred ceEeeeCCccCHHHHHHHcCCccc-eeccCCCCCCChHH----HHHHHHHhcCC--CCceEEEe-ECCeeEEEEEeeeCC
Q 047585 19 HISLRPLELSDIDDFMVWVSDPKV-ARFCPWESYTNKED----GINYIKTKVPQ--HPWFRAIC-VNNRPVGATSVRPNS 90 (185)
Q Consensus 19 ~i~ir~~~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~-~~~~~iG~~~~~~~~ 90 (185)
...||+++++|++.+.++..+... ..+. .+..+.+. ...|+...... ....+++. .+|++||++.+....
T Consensus 46 ~~~iR~a~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~ 123 (194)
T PRK10975 46 TTGARVATETDIPALRQLAAQAFAQSRFR--APWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELN 123 (194)
T ss_pred CCCcccCCcccHHHHHHHHHHHhhhcccc--CccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecC
Confidence 477899999999999999876422 1121 11222332 23344433222 12333333 378999999998654
Q ss_pred CCCCceeeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 91 GNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 91 ~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
.. . ..++ ++|.|+|||+|+|++++..+++++++. |++++.+.+...|.+|++||+|+||+.+++..
T Consensus 124 ~~--~-~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~--g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 124 DT--D-ARIGLLAVFPGAQGRGIGARLMQAALNWCQAR--GLTRLRVATQMGNLAALRLYIRSGANIESTAY 190 (194)
T ss_pred CC--c-eEEEEEEEChhhcCCCHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEe
Confidence 32 2 5676 458999999999999999999999876 99999999999999999999999999988754
No 21
>PRK10562 putative acetyltransferase; Provisional
Probab=99.80 E-value=4.4e-18 Score=111.22 Aligned_cols=141 Identities=13% Similarity=0.128 Sum_probs=96.2
Q ss_pred eeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceeeee-
Q 047585 22 LRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAELG- 100 (185)
Q Consensus 22 ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~- 100 (185)
|||++.+|++.+.+++.+...... +.............+.....+....+++..+|++||++.+... ..++
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~~-------~~i~~ 73 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAH-PFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLEG-------RFVGA 73 (145)
T ss_pred cccccchhhHHHHHHHHHhccccC-CCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEeec-------cEEEE
Confidence 799999999999999865432111 1111101122223333333334455666668999999998542 2344
Q ss_pred EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeeeeEEEEecc
Q 047585 101 YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKDMVVFSLLS 180 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~~~~~~ 180 (185)
++|+|+|||+|+|+.+++.+++ .++.+.+.+...|.+|++||+|+||+.++... ..+...+.++|+...
T Consensus 74 ~~v~~~~rg~G~g~~ll~~~~~-------~~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~~~----~~~~~~~~~~~~~~~ 142 (145)
T PRK10562 74 LFVAPKAVRRGIGKALMQHVQQ-------RYPHLSLEVYQKNQRAVNFYHAQGFRIVDSAW----QEETQHPTWIMSWQA 142 (145)
T ss_pred EEECHHHcCCCHHHHHHHHHHh-------hCCeEEEEEEcCChHHHHHHHHCCCEEccccc----cCCCCCEEEEEEecC
Confidence 8899999999999988877755 23467888999999999999999999998632 344445788887654
Q ss_pred C
Q 047585 181 T 181 (185)
Q Consensus 181 ~ 181 (185)
+
T Consensus 143 ~ 143 (145)
T PRK10562 143 D 143 (145)
T ss_pred C
Confidence 3
No 22
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.78 E-value=1.5e-17 Score=104.61 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=100.5
Q ss_pred CceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCC-ceEEEeE---CCeeEEEEEeeeCCCCC
Q 047585 18 SHISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHP-WFRAICV---NNRPVGATSVRPNSGND 93 (185)
Q Consensus 18 ~~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~iG~~~~~~~~~~~ 93 (185)
.++.||+++++|.+.+.++...-.....+......+.+....-. ...+.- .+.++.. +++++|++.+...-+..
T Consensus 2 ~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~--F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW 79 (163)
T KOG3216|consen 2 DNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDG--FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTW 79 (163)
T ss_pred CceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhh--ccCCCccEEEEEEEecCCCceeEEeeeecccccc
Confidence 46899999999999999988753333333222222333332211 222222 2222222 78999999998876543
Q ss_pred Cc--eeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 94 MC--RAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 94 ~~--~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
.. ...+ .++|.|.|||+|+|+.+++.+.+.|.+. |+.++...|..-|.+|+.||++.|++..+..+
T Consensus 80 ~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~--G~~rv~w~vldwN~rAi~lY~k~gaq~l~~W~ 148 (163)
T KOG3216|consen 80 LGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKL--GTPRVEWVVLDWNHRAILLYEKVGAQDLKEWR 148 (163)
T ss_pred cccceEEEEeeEecchhcccChHHHHHHHHHHHHHHc--CCCcEEEEEeccchhHHHHHHHhCccccceeE
Confidence 22 1223 4789999999999999999999999776 99999999999999999999999999877744
No 23
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.77 E-value=1.1e-17 Score=107.17 Aligned_cols=90 Identities=19% Similarity=0.310 Sum_probs=75.7
Q ss_pred ceEEEeECCeeEEEEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHH
Q 047585 70 WFRAICVNNRPVGATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVL 149 (185)
Q Consensus 70 ~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y 149 (185)
.++++..++++||++.+...... . ....++|+|+|||+|+|+++++.+++++++. +++.+.+.+.+.|.++++||
T Consensus 32 ~~~~~~~~~~~vg~~~~~~~~~~-~--~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~--~~~~i~~~~~~~n~~~~~~y 106 (131)
T TIGR01575 32 CYLLARIGGKVVGYAGVQIVLDE-A--HILNIAVKPEYQGQGIGRALLRELIDEAKGR--GVNEIFLEVRVSNIAAQALY 106 (131)
T ss_pred eEEEEecCCeEEEEEEEEecCCC-e--EEEEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCeEEEEEecccHHHHHHH
Confidence 33444448999999998765432 1 3346889999999999999999999999886 89999999999999999999
Q ss_pred HHcCCeEEEEEeeEE
Q 047585 150 EKAGFKREGVLGKYF 164 (185)
Q Consensus 150 ~~~GF~~~~~~~~~~ 164 (185)
+++||+.++..+.+.
T Consensus 107 ~~~Gf~~~~~~~~~~ 121 (131)
T TIGR01575 107 KKLGFNEIAIRRNYY 121 (131)
T ss_pred HHcCCCccccccccc
Confidence 999999999877654
No 24
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.77 E-value=6.5e-17 Score=102.88 Aligned_cols=107 Identities=23% Similarity=0.447 Sum_probs=85.0
Q ss_pred CCceEEEeECC--eeEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHh
Q 047585 68 HPWFRAICVNN--RPVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVA 144 (185)
Q Consensus 68 ~~~~~~~~~~~--~~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~ 144 (185)
.+.++++..|+ ..||.+.+......+...+.+. +.|+++|||+|||++|++.+++++... |+..+.+.+...|.+
T Consensus 54 wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~--g~~eVvLeTe~~n~~ 131 (165)
T KOG3139|consen 54 WPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSR--GYSEVVLETEVTNLS 131 (165)
T ss_pred CceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHC--CCcEEEEeccccchH
Confidence 33344444433 3699999988776552335664 779999999999999999999999888 999999999999999
Q ss_pred hHHHHHHcCCeEEEEEeeEEEECCeeeeeEEEEec
Q 047585 145 SQRVLEKAGFKREGVLGKYFIMKGSTKDMVVFSLL 179 (185)
Q Consensus 145 a~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~~~~~ 179 (185)
|.++|+++||+..++...++ .+|. |.+.+.+.
T Consensus 132 A~~LY~sLGF~r~~r~~~YY-lng~--dA~rl~L~ 163 (165)
T KOG3139|consen 132 ALRLYESLGFKRDKRLFRYY-LNGM--DALRLKLF 163 (165)
T ss_pred HHHHHHhcCceEecceeEEE-ECCc--ceEEEEee
Confidence 99999999999999877665 5665 66666553
No 25
>PRK09831 putative acyltransferase; Provisional
Probab=99.76 E-value=2e-17 Score=108.29 Aligned_cols=139 Identities=16% Similarity=0.191 Sum_probs=95.8
Q ss_pred eEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHH-------HHHhcCCCCceEEEeECCeeEEEEEeeeCCCC
Q 047585 20 ISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINY-------IKTKVPQHPWFRAICVNNRPVGATSVRPNSGN 92 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~ 92 (185)
+.||+++++|++.+.+++.+...... ....+.+....| +..... ...++++..+|++||++.+...
T Consensus 1 ~~ir~a~~~D~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~iiG~~~~~~~--- 73 (147)
T PRK09831 1 IQIRNYQPGDFQQLCAIFIRAVTMTA---SQHYSPQQIAAWAQIDESRWKEKLA-KSQVRVAVINAQPVGFITCIEH--- 73 (147)
T ss_pred CccccCChhhHHHHHHHHHHHHHHhh---hhcCCHHHHHhccCCCHHHHHHHHh-cCceEEEEECCEEEEEEEehhc---
Confidence 36899999999999998764221111 011122222222 112222 3345556669999999987531
Q ss_pred CCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeee
Q 047585 93 DMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKD 172 (185)
Q Consensus 93 ~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d 172 (185)
..-.++|.|++||+|+|+.|++.+++.++. + .+. .|..+++||+|+||+.++..+ ...+|.+.|
T Consensus 74 ----~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-------l--~v~-~~~~a~~~Y~k~Gf~~~g~~~--~~~~g~~~~ 137 (147)
T PRK09831 74 ----YIDMLFVDPEYTRRGVASALLKPLIKSESE-------L--TVD-ASITAKPFFERYGFQTVKQQR--VECRGEWFI 137 (147)
T ss_pred ----eeeeEEECHHHcCCCHHHHHHHHHHHHhhh-------e--Eee-cchhhHHHHHHCCCEEeeccc--eEECCEEEE
Confidence 223578999999999999999999987632 2 233 257899999999999999876 335788999
Q ss_pred eEEEEeccC
Q 047585 173 MVVFSLLST 181 (185)
Q Consensus 173 ~~~~~~~~~ 181 (185)
.+.|.+.++
T Consensus 138 ~~~m~~~~~ 146 (147)
T PRK09831 138 NFYMRYKPQ 146 (147)
T ss_pred eeEEEecCC
Confidence 999998775
No 26
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.73 E-value=9e-17 Score=94.99 Aligned_cols=79 Identities=23% Similarity=0.299 Sum_probs=69.5
Q ss_pred eECCeeEEEEEeeeCCCCC---CceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHH
Q 047585 75 CVNNRPVGATSVRPNSGND---MCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEK 151 (185)
Q Consensus 75 ~~~~~~iG~~~~~~~~~~~---~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~ 151 (185)
..+|++||++.+....... .......++|+|+|||+|+|+.|++.+++++++. ++..+.+.+.+.|.++++||+|
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~--g~~~i~~~~~~~n~~~~~~~~k 79 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKR--GIKRIYLDVSPDNPAARRFYEK 79 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHT--TESEEEEEEETTGHHHHHHHHH
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhc--CccEEEEEEeCCCHHHHHHHHH
Confidence 3589999999999987652 3323346889999999999999999999999885 9999999999999999999999
Q ss_pred cCCe
Q 047585 152 AGFK 155 (185)
Q Consensus 152 ~GF~ 155 (185)
+||+
T Consensus 80 ~Gf~ 83 (83)
T PF00583_consen 80 LGFE 83 (83)
T ss_dssp TTEE
T ss_pred cCCC
Confidence 9996
No 27
>PHA00673 acetyltransferase domain containing protein
Probab=99.71 E-value=7.4e-16 Score=99.49 Aligned_cols=129 Identities=11% Similarity=0.028 Sum_probs=92.2
Q ss_pred CCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCC-CceEEEeECCeeEEEEEeeeCCCCCCc---eeee-
Q 047585 25 LELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQH-PWFRAICVNNRPVGATSVRPNSGNDMC---RAEL- 99 (185)
Q Consensus 25 ~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iG~~~~~~~~~~~~~---~~~~- 99 (185)
++.+|++.|.+++.+... .......... ......++....++ ...+++..+|++||++.+...+..... .+.+
T Consensus 12 A~~~D~paI~~LLadd~l-~~~r~d~~~~-~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie 89 (154)
T PHA00673 12 AELADAPTFASLCAEYAH-ESANADLAGR-APDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTE 89 (154)
T ss_pred ccHhhHHHHHHHHHhccc-cccccccccc-chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEE
Confidence 688999999999987322 2111111111 22222244444444 455555569999999999887754322 1344
Q ss_pred eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEE
Q 047585 100 GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREG 158 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~ 158 (185)
.++|+|++||+|+|++|++.+++++++. |+..++++..+ +.....||.++|++...
T Consensus 90 ~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~--Gc~~lyis~~p-~~~tv~fy~~~g~~~~~ 145 (154)
T PHA00673 90 SIFVAAAHRPGGAGMALLRATEALARDL--GATGLYVSGPT-EGRLVQLLPAAGYRETN 145 (154)
T ss_pred EEEEChhccCCCHHHHHHHHHHHHHHHC--CCCEEEEecCC-CccchHHHHhCCchhhc
Confidence 5789999999999999999999999988 99999998765 46789999999998765
No 28
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.71 E-value=7.1e-16 Score=119.84 Aligned_cols=134 Identities=11% Similarity=0.091 Sum_probs=97.0
Q ss_pred cCceEeeeC-CccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeE--CCeeEEEEEeeeCCC--
Q 047585 17 LSHISLRPL-ELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICV--NNRPVGATSVRPNSG-- 91 (185)
Q Consensus 17 ~~~i~ir~~-~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iG~~~~~~~~~-- 91 (185)
.+.+.||++ +.+|++.+.+++..... .+ .+.+.. ..........++++.. +|++||++.+.....
T Consensus 80 ~~g~~IR~~~~~~D~~~I~~L~~~~~~------~p-~~~~~~---~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~ 149 (547)
T TIGR03103 80 PRGFTVRRLRGPADVDAINRLYAARGM------VP-VRVDFV---LDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAF 149 (547)
T ss_pred CCCcEEEeCCChhHHHHHHHHHHhcCC------CC-CCHHHH---HHHhcCCCceEEEEEECCCCeEEEEEEEEeccccc
Confidence 356999998 68999999999875221 11 122222 2222223344555553 689999997643211
Q ss_pred --CCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEee
Q 047585 92 --NDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGK 162 (185)
Q Consensus 92 --~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~ 162 (185)
.........++|+|+|||+|+|+.|++.+++++++. |+..+.+.|..+|.+|++||+|+||+..+.+..
T Consensus 150 ~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~--G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~ 220 (547)
T TIGR03103 150 NDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSR--GCAYMDLSVMHDNEQAIALYEKLGFRRIPVFAL 220 (547)
T ss_pred cCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEE
Confidence 111213346889999999999999999999999876 999999999999999999999999998876654
No 29
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.70 E-value=1.2e-15 Score=110.81 Aligned_cols=139 Identities=14% Similarity=0.066 Sum_probs=92.6
Q ss_pred cCceEeeeCCc-cCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeE--CCeeEEEEEeeeCCCCC
Q 047585 17 LSHISLRPLEL-SDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICV--NNRPVGATSVRPNSGND 93 (185)
Q Consensus 17 ~~~i~ir~~~~-~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iG~~~~~~~~~~~ 93 (185)
...+++|+++. .|.+.+.++..... ...+.....+.+...............++++.. +|++||++.+.......
T Consensus 147 ~~g~~~r~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~~ 224 (292)
T TIGR03448 147 PDGVTVRAYVGAPDDAEWLRVNNAAF--AWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDEP 224 (292)
T ss_pred CCCeEeeccCCCcchHHHHHHHHHHh--hCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCCC
Confidence 46799999864 47777777643211 111111112333333322221111233445555 58999997665443211
Q ss_pred Cceeeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 94 MCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 94 ~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
.. ..+. +.|+|+|||+|+|++++..+++++++. ++..+.+.+.+.|.+|++||+|+||+..++.
T Consensus 225 ~~-~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~--g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~ 289 (292)
T TIGR03448 225 AL-GEVYVVGVDPAAQGRGLGDALTLIGLHHLAAR--GLPAVMLYVEADNEAAVRTYEKLGFTVAEVD 289 (292)
T ss_pred ce-eEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEEEeCCCHHHHHHHHHcCCEEcccc
Confidence 11 3443 579999999999999999999999886 9999999999999999999999999887653
No 30
>PRK07757 acetyltransferase; Provisional
Probab=99.70 E-value=6.4e-16 Score=101.75 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=87.9
Q ss_pred eEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceeee
Q 047585 20 ISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAEL 99 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ 99 (185)
+.||+++++|++.+.++......... ....+.+.....+ ..++++..+|++||++.+...... . .++
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~-------~~~~i~~~~~~lvG~~~l~~~~~~--~-~~i 68 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKKGL---MLPRSLDELYENI-------RDFYVAEEEGEIVGCCALHILWED--L-AEI 68 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhcCC---ccCCCHHHHHhcc-------CcEEEEEECCEEEEEEEEEeccCC--c-eEE
Confidence 68999999999999999764321111 1112233222221 234566669999999999765432 1 455
Q ss_pred -eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 100 -GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 100 -~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
+++|+|+|||+|+|++|++.+++++++. +++.+.+.+. +.+||+|+||+..+..
T Consensus 69 ~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~--g~~~i~~~~~-----~~~~Y~k~GF~~~~~~ 123 (152)
T PRK07757 69 RSLAVSEDYRGQGIGRMLVEACLEEAREL--GVKRVFALTY-----QPEFFEKLGFREVDKE 123 (152)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHhC--CCCeEEEEeC-----cHHHHHHCCCEEcccc
Confidence 6889999999999999999999999775 8998877653 4689999999998763
No 31
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.69 E-value=1.8e-15 Score=97.47 Aligned_cols=141 Identities=20% Similarity=0.261 Sum_probs=106.2
Q ss_pred ceEeeeCCccCHHHHHHHcCCccceecc----CCCCCCChHHHHHHHHHhcCCC------------CceEEEeECCeeEE
Q 047585 19 HISLRPLELSDIDDFMVWVSDPKVARFC----PWESYTNKEDGINYIKTKVPQH------------PWFRAICVNNRPVG 82 (185)
Q Consensus 19 ~i~ir~~~~~D~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~iG 82 (185)
.+.|+..+..|.++++++..+.....-. .+....+.+....|++...... ..+|++..++++||
T Consensus 3 ~~~l~~p~L~~k~a~le~~~e~~~~~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~d~~ivG 82 (174)
T COG3981 3 EMKLRRPTLKDKDAFLEMKKEFLTDGSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDEDGQIVG 82 (174)
T ss_pred cccccCCchhhHHHHHHHHHhhhhcCCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEecCCcEEE
Confidence 4678888999999999887653322211 1222223366777777643311 13344444899999
Q ss_pred EEEeeeCCCCC--CceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 83 ATSVRPNSGND--MCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 83 ~~~~~~~~~~~--~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
++.+...-... ...+.||+.|.|+.||||+|++++.++++.|++. |++++.++|+.+|.+|++.-+++|=..+.++
T Consensus 83 ~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~l--gi~~Vlvtcd~dN~ASrkvI~~NGGile~~~ 160 (174)
T COG3981 83 FINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKAREL--GIKKVLVTCDKDNIASRKVIEANGGILENEF 160 (174)
T ss_pred EEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHc--CCCeEEEEeCCCCchhhHHHHhcCCEEeEEE
Confidence 99998875432 1127899999999999999999999999999876 9999999999999999999999998888776
Q ss_pred e
Q 047585 161 G 161 (185)
Q Consensus 161 ~ 161 (185)
.
T Consensus 161 ~ 161 (174)
T COG3981 161 F 161 (174)
T ss_pred c
Confidence 5
No 32
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.68 E-value=2e-15 Score=101.81 Aligned_cols=138 Identities=15% Similarity=0.156 Sum_probs=95.9
Q ss_pred cCceEeeeCCccCHH--HHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeE---CC----eeEEEEEee
Q 047585 17 LSHISLRPLELSDID--DFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICV---NN----RPVGATSVR 87 (185)
Q Consensus 17 ~~~i~ir~~~~~D~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~iG~~~~~ 87 (185)
...+.+|++...|+. .+..+........ .+.+.......+.. .....++... ++ +++|++...
T Consensus 9 ~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~---~~~~~~v~~~~~~~~~~~~~~~G~~~~~ 80 (177)
T COG0456 9 EDKVTIREAINKDLLDVALAALEARTFDIR-----LPWSREYFEKDLTQ---APELLLVAETGGLDGLLDGKVVGFLLVR 80 (177)
T ss_pred ccceehhhhhhcccchHHHHHHhhhcCCCC-----CcchHHHHHHHHhh---CcceeEEEEecccCCCcccceeEEEEEE
Confidence 345788999999998 6666544322110 11233333333332 2333334333 22 599999997
Q ss_pred eCCCCCC---ceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCc-cEEEEEeccCCHhhHHHHHHcCCeEEEEEeeE
Q 047585 88 PNSGNDM---CRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHL-ERLEAVVDVENVASQRVLEKAGFKREGVLGKY 163 (185)
Q Consensus 88 ~~~~~~~---~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~-~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~ 163 (185)
....... ......+.|+|+|||+|+|++|++.+++.+++. +. ..+.+.|..+|.+|++||+++||+..++...+
T Consensus 81 ~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~--~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~y 158 (177)
T COG0456 81 VVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRER--GLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNY 158 (177)
T ss_pred EecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhc--CCCceEEEEEecCChHHHHHHHHcCCEEEeeehhh
Confidence 4443210 113346889999999999999999999999887 65 89999999999999999999999999987755
Q ss_pred E
Q 047585 164 F 164 (185)
Q Consensus 164 ~ 164 (185)
+
T Consensus 159 y 159 (177)
T COG0456 159 Y 159 (177)
T ss_pred c
Confidence 4
No 33
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.68 E-value=8.8e-16 Score=102.61 Aligned_cols=122 Identities=14% Similarity=0.114 Sum_probs=88.2
Q ss_pred CceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEe-ECCeeEEEEEeeeCCCCCCce
Q 047585 18 SHISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAIC-VNNRPVGATSVRPNSGNDMCR 96 (185)
Q Consensus 18 ~~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iG~~~~~~~~~~~~~~ 96 (185)
+.+.||+++++|.+.+.++...... .. .........++.. ...++++. .++++||++.+..... ..
T Consensus 4 ~~i~iR~a~~~D~~~i~~L~~~~~~-~~-----~~~~~~~~~~~~~----~~~~~va~~~~~~iiG~~~~~~~~~--~~- 70 (169)
T PRK07922 4 GAITVRRARTSDVPAIKRLVDPYAQ-GR-----ILLEKNLVTLYEA----VQEFWVAEHLDGEVVGCGALHVMWE--DL- 70 (169)
T ss_pred CCceeecCCHhhHHHHHHHHHHHhh-cC-----ccccchHHHHHhh----cCcEEEEEecCCcEEEEEEEeecCC--Cc-
Confidence 4589999999999999998753111 00 0011112223332 23455666 6899999998865432 12
Q ss_pred eeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 97 AELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 97 ~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
+++. ++|+|++||+|+|+++++.+++++++. ++..+.+.+. +.+||+|+||+..+.
T Consensus 71 ~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~--g~~~l~~~~~-----~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 71 AEIRTVAVDPAARGRGVGHAIVERLLDVAREL--GLSRVFVLTF-----EVEFFARHGFVEIDG 127 (169)
T ss_pred eEEEEEEECHHHhCCCHHHHHHHHHHHHHHHc--CCCEEEEEec-----cHHHHHHCCCEECcc
Confidence 6674 889999999999999999999999876 9999988764 368999999998654
No 34
>PHA01807 hypothetical protein
Probab=99.68 E-value=2.8e-15 Score=97.80 Aligned_cols=124 Identities=6% Similarity=0.039 Sum_probs=87.6
Q ss_pred eCCccCHHHHHHHcCCccceeccCCCCCCC-hHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceee-ee-
Q 047585 24 PLELSDIDDFMVWVSDPKVARFCPWESYTN-KEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAE-LG- 100 (185)
Q Consensus 24 ~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~-~~- 100 (185)
.++.+|++.+..+.... ...+....+..+ .+....+...........+++..+|++||++.+........ .. ++
T Consensus 8 ~~~~~d~~~~~~l~l~~-l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~--~~i~~l 84 (153)
T PHA01807 8 HAKAGTPSELQGLCWLA-IQELEEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHV--GPCLGV 84 (153)
T ss_pred hhhhCCHHHHHHHHHHH-HHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcce--eeeccc
Confidence 46778888888876421 112211111222 33335555444454445555556999999999876653211 23 23
Q ss_pred --EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHc
Q 047585 101 --YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKA 152 (185)
Q Consensus 101 --~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~ 152 (185)
++|.|+|||+|+|+.|++.+++++++. |+..+.+.+...|.+|++||++.
T Consensus 85 ~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~--G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 85 QWQYVLPEYRNAGVAREFLRELIRLAGEG--NLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred eeEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEEecCCcHHHHHHHHhc
Confidence 589999999999999999999999887 99999999999999999999974
No 35
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.65 E-value=3.2e-15 Score=109.59 Aligned_cols=126 Identities=13% Similarity=0.204 Sum_probs=95.4
Q ss_pred ceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeE-----CCeeEEEEEeeeCCCCC
Q 047585 19 HISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICV-----NNRPVGATSVRPNSGND 93 (185)
Q Consensus 19 ~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iG~~~~~~~~~~~ 93 (185)
.++||+++++|++.+.++...... +.......+.++...++.. . ..+++.. ++.+||++.+......
T Consensus 186 ~~~Ir~a~~~Dl~ri~~L~~~tnq--fn~~~~~~s~~~i~~~l~~----~-~~~~~~~~d~~gd~givG~~~~~~~~~~- 257 (320)
T TIGR01686 186 SLNISKNDEQNVQRVEELLGRTNQ--FNATYTRLNQEDVAQHMQK----E-EIVTVSMSDRFGDSGIIGIFVFEKKEGN- 257 (320)
T ss_pred EEEEEECChhhhHHHHHHHHhHHh--hhccCccCCHHHHHHHhcC----C-CEEEEEEEecCCCCceEEEEEEEecCCc-
Confidence 478999999999999999864321 2112234466666666643 2 3443332 5679999988654321
Q ss_pred Cceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEec--cCCHhhHHHHHHcCCeEE
Q 047585 94 MCRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVD--VENVASQRVLEKAGFKRE 157 (185)
Q Consensus 94 ~~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~--~~N~~a~~~y~~~GF~~~ 157 (185)
+.+ .++|+|++||+|+|+.++..+++.+++. |++.+.+.+. ..|.+|++||+++||+.+
T Consensus 258 ---~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~--G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 258 ---LFIDDLCMSCRALGRGVETRMLRWLFEQALDL--GNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred ---EEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHc--CCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 444 6889999999999999999999999887 9999999885 479999999999999854
No 36
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.61 E-value=1.3e-14 Score=92.63 Aligned_cols=122 Identities=14% Similarity=0.164 Sum_probs=81.6
Q ss_pred EeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCc----e
Q 047585 21 SLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMC----R 96 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~----~ 96 (185)
.||+++++|.+.+.+++....- ...+..+...+...... ....+++.++|++||.+.+.+....... .
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~ 72 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFG-------DSESPPEIWEYFRNLYG-PGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKA 72 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTT-------T-CHHHHHHHHHHHHHH-TTEEEEEEETTEEEEEEEEEEEEEEETTEEEEE
T ss_pred CceECCHHHHHHHHHHHHHHCC-------CCCCchhhhhhhhcccC-cCcEEEEEECCEEEEEEEEEEEEEEECCEEEEE
Confidence 4899999999999999763211 11111122333344333 3456677779999999999876322111 1
Q ss_pred e-eeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEE
Q 047585 97 A-ELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKRE 157 (185)
Q Consensus 97 ~-~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~ 157 (185)
+ ..++.|+|+|||+|+|+.|++.+++.+++. ++.-+.+.. .+..||+++||+..
T Consensus 73 ~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~--g~~~~~l~~-----~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 73 AYIGDVAVDPEYRGRGLGRQLMRALLERARER--GVPFIFLFP-----SSPPFYRRFGFEYA 127 (127)
T ss_dssp EEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHT--T-SEEEEE------SSHHHHHHTTEEEE
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHHhC--CCCEEEEec-----CChhhhhcCCCEEC
Confidence 2 224779999999999999999999999887 888777654 24789999999863
No 37
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.59 E-value=3.3e-14 Score=89.41 Aligned_cols=83 Identities=20% Similarity=0.283 Sum_probs=62.2
Q ss_pred HHHHHhcCCC-CceEEEeECCeeEEEEEeeeCCCCCCceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEE
Q 047585 59 NYIKTKVPQH-PWFRAICVNNRPVGATSVRPNSGNDMCRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEA 136 (185)
Q Consensus 59 ~~~~~~~~~~-~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~ 136 (185)
..+...+... ...+++..+|++||++.+. . . ..+ .++|.|+|||+|+|++|+..++++++. ++..+.+
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~--~--~---~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~---~~~~l~~ 102 (117)
T PF13673_consen 33 EDLEEYLEEGSHTIFVAEEGGEIVGFAWLE--P--D---GEISHLYVLPEYRGRGIGRALLDAAEKEAKD---GIRRLTV 102 (117)
T ss_dssp HHHHHHHCTCCCEEEEEEETTEEEEEEEEE--T--C---EEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT---TCEEEEE
T ss_pred HHHHHHHHhcCCEEEEEEECCEEEEEEEEc--C--C---CeEEEEEEChhhcCCcHHHHHHHHHHHHHHc---CCcEEEE
Confidence 3444444443 4566677799999999986 1 1 224 478999999999999999999998843 6777766
Q ss_pred EeccCCHhhHHHHHHcCC
Q 047585 137 VVDVENVASQRVLEKAGF 154 (185)
Q Consensus 137 ~~~~~N~~a~~~y~~~GF 154 (185)
. .|..+.+||+++||
T Consensus 103 ~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 103 E---ANERARRFYRKLGF 117 (117)
T ss_dssp E---C-HHHHHHHHHTT-
T ss_pred E---eCHHHHHHHHhCCC
Confidence 6 89999999999998
No 38
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.59 E-value=3.4e-14 Score=87.73 Aligned_cols=129 Identities=18% Similarity=0.263 Sum_probs=97.4
Q ss_pred eEeeeCCccCHHH-HHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceE-EEeE---CCeeEEEEEeeeCCCCCC
Q 047585 20 ISLRPLELSDIDD-FMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFR-AICV---NNRPVGATSVRPNSGNDM 94 (185)
Q Consensus 20 i~ir~~~~~D~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~iG~~~~~~~~~~~~ 94 (185)
+.|||+..+|+.. +.+++..-- .....+.++....++.+.....+++ ++.. .+++||.+.+.-....-+
T Consensus 7 ~~lR~L~~~D~~kGf~elL~qLT------~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh 80 (150)
T KOG3396|consen 7 FKLRPLEEDDYGKGFIELLKQLT------SVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIH 80 (150)
T ss_pred eEEeecccccccchHHHHHHHHh------hccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhh
Confidence 8999999999986 666665311 1223478888888887777666333 3333 689999998876543211
Q ss_pred ---ceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 95 ---CRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 95 ---~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
..+.+ .+.|++++||+++|+.++..+...++.- |+-++.+.|.+.| ..||+|+||...+.
T Consensus 81 ~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~l--gcYKi~LdC~~~n---v~FYeKcG~s~~~~ 144 (150)
T KOG3396|consen 81 GCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSL--GCYKIILDCDPKN---VKFYEKCGYSNAGN 144 (150)
T ss_pred cccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhc--CcEEEEEecchhh---hhHHHHcCccccch
Confidence 11333 3779999999999999999999999876 9999999999887 56999999987664
No 39
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.58 E-value=3.5e-14 Score=90.52 Aligned_cols=121 Identities=17% Similarity=0.285 Sum_probs=92.0
Q ss_pred EeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceeee-
Q 047585 21 SLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAEL- 99 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~- 99 (185)
.||.++.+|...|.++......... -..-+.+....-+.+ ++++..+|.+||++.+.+....+- +++
T Consensus 2 ~iR~A~~~Di~~I~~Li~~~~~~gi---l~~rs~~~le~~i~d-------F~i~E~~g~viGC~aL~~~~~~~~--gE~~ 69 (153)
T COG1246 2 QIRKARISDIPAILELIRPLELQGI---LLRRSREQLEEEIDD-------FTIIERDGKVIGCAALHPVLEEDL--GELR 69 (153)
T ss_pred ceeeccccchHHHHHHHHHHhhccc---cchhhHHHHHHHHhh-------heeeeeCCcEEEEEeecccCccCe--eeEE
Confidence 6899999999999998764322111 112234444444443 566667999999999996443222 666
Q ss_pred eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 100 GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
++.|+|++||+|+|.+++..++..|++. |++++++.+. .+..||+++||+....
T Consensus 70 ~laV~pd~r~~G~G~~Ll~~~~~~Ar~~--gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 70 SLAVHPDYRGSGRGERLLERLLADAREL--GIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred EEEECHHhcCCCcHHHHHHHHHHHHHHc--CCceeeeeec----ccHHHHHHcCCeECcc
Confidence 5889999999999999999999999887 9999998774 5789999999998664
No 40
>PLN02825 amino-acid N-acetyltransferase
Probab=99.58 E-value=2.5e-14 Score=109.43 Aligned_cols=123 Identities=11% Similarity=0.133 Sum_probs=90.8
Q ss_pred eEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceeee
Q 047585 20 ISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAEL 99 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ 99 (185)
-.||+++.+|++.+.++........ .....+.+.... .. ..++++..||++||++.+...... . .+++
T Consensus 368 e~IR~At~eDi~~I~~Li~~lee~g---~lv~rs~e~le~----ei---~~f~V~e~Dg~IVG~aal~~~~~~-~-~aEI 435 (515)
T PLN02825 368 EGTRMARVEDLAGIRQIIRPLEESG---ILVRRTDEELLR----AL---DSFVVVEREGSIIACAALFPFFEE-K-CGEV 435 (515)
T ss_pred hhheeCCHHHHHHHHHHHHHHHHcC---CCcCCCHHHHHh----cC---CcEEEEEECCEEEEEEEEEeecCC-C-cEEE
Confidence 3489999999999999886422111 111223333222 21 246666679999999998766432 2 2677
Q ss_pred e-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 100 G-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 100 ~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
. ++|+|+|||+|+|+.|++.+++.+++. |++++.+.+ ..+.+||+++||+..+..
T Consensus 436 ~~laV~P~yRGkGiG~~LL~~le~~Ar~~--G~~~L~Llt----t~a~~fY~k~GF~~~~~~ 491 (515)
T PLN02825 436 AAIAVSPECRGQGQGDKLLDYIEKKAASL--GLEKLFLLT----TRTADWFVRRGFSECSIE 491 (515)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEEe----CcHHHHHHHCCCEEeChh
Confidence 4 889999999999999999999999887 999999876 347899999999987753
No 41
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.57 E-value=7.3e-14 Score=81.69 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=59.5
Q ss_pred CceEEEeECCeeEEEEEeeeCCCCCCceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHH
Q 047585 69 PWFRAICVNNRPVGATSVRPNSGNDMCRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQR 147 (185)
Q Consensus 69 ~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~ 147 (185)
..++++..++++||++.+..... . ..+ .+.|+|++||+|+|+.++..+.+.+. ...+.+.+ |..+.+
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~---~-~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~-----~~~i~l~~---~~~~~~ 70 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNED---F-AYIGYLAVDPEYRGKGIGSKLLNYLLEKAK-----SKKIFLFT---NPAAIK 70 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTT---E-EEEEEEEE-GGGTTSSHHHHHHHHHHHHHT-----CSEEEEEE---EHHHHH
T ss_pred cEEEEEEECCEEEEEEEEEEcCC---E-EEEEEEEECHHHcCCCHHHHHHHHHHHHcC-----CCcEEEEE---cHHHHH
Confidence 34566777999999999977654 2 455 57899999999999999999988773 24466655 678999
Q ss_pred HHHHcCCeE
Q 047585 148 VLEKAGFKR 156 (185)
Q Consensus 148 ~y~~~GF~~ 156 (185)
||+++||++
T Consensus 71 fY~~~GF~~ 79 (79)
T PF13508_consen 71 FYEKLGFEE 79 (79)
T ss_dssp HHHHTTEEE
T ss_pred HHHHCcCCC
Confidence 999999975
No 42
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.57 E-value=1e-13 Score=100.67 Aligned_cols=129 Identities=13% Similarity=0.085 Sum_probs=87.8
Q ss_pred eeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceeeeeEE
Q 047585 23 RPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAELGYV 102 (185)
Q Consensus 23 r~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~ 102 (185)
.|++++|++++.++...... .. .....+. +....+..........+++..++++||++.+........ ....++
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~--~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~l~ 77 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATA--VD-GVAPVSE-QVLRGLREPGAGHTRHLVAVDSDPIVGYANLVPARGTDP--AMAELV 77 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHh--cC-CCCCCCH-HHHhhccccCCCCceEEEEEECCEEEEEEEEEcCCCCcc--eEEEEE
Confidence 46788999999998774222 11 1222233 233333221222234555556899999999877643222 334578
Q ss_pred ECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeE
Q 047585 103 LASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKY 163 (185)
Q Consensus 103 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~ 163 (185)
|+|+|||+|+|++|++.+++.+. ..+.+.+...|.++++||+++||+..+.....
T Consensus 78 V~p~~rg~GiG~~Ll~~~~~~~~------~~~~~~~~~~n~~a~~fy~~~Gf~~~~~~~~~ 132 (292)
T TIGR03448 78 VHPAHRRRGIGRALIRALLAKGG------GRLRVWAHGDLPAARALASRLGLVPTRELLQM 132 (292)
T ss_pred ECHhhcCCCHHHHHHHHHHHhcc------CceEEEEcCCCHHHHHHHHHCCCEEccEEEEE
Confidence 99999999999999999988652 34677788899999999999999988765433
No 43
>PRK10314 putative acyltransferase; Provisional
Probab=99.56 E-value=6e-14 Score=92.23 Aligned_cols=86 Identities=10% Similarity=0.073 Sum_probs=67.9
Q ss_pred CceEEEeECCeeEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHH
Q 047585 69 PWFRAICVNNRPVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQR 147 (185)
Q Consensus 69 ~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~ 147 (185)
...+++..++++||++.+......... ..++ ++|+|+|||+|+|++|++.+++++.... +...+.+.+ |..+.+
T Consensus 48 ~~h~~~~~~~~~vg~~r~~~~~~~~~~-~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~-~~~~i~L~a---~~~a~~ 122 (153)
T PRK10314 48 NRHILGWKNDELVAYARILKSDDDLEP-VVIGRVIVSEALRGEKVGQQLMSKTLESCTRHW-PDKPVYLGA---QAHLQN 122 (153)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCCC-EEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHC-CCCcEEEeh---HHHHHH
Confidence 344455558999999999875432222 5565 8899999999999999999999998765 677787765 567889
Q ss_pred HHHHcCCeEEEE
Q 047585 148 VLEKAGFKREGV 159 (185)
Q Consensus 148 ~y~~~GF~~~~~ 159 (185)
||+|+||+..+.
T Consensus 123 fY~k~GF~~~g~ 134 (153)
T PRK10314 123 FYQSFGFIPVTE 134 (153)
T ss_pred HHHHCCCEECCC
Confidence 999999998884
No 44
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.55 E-value=6.5e-14 Score=106.53 Aligned_cols=123 Identities=14% Similarity=0.226 Sum_probs=88.3
Q ss_pred eEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceeee
Q 047585 20 ISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAEL 99 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ 99 (185)
+.||+++.+|++.+.+++....... +. ......+++... ..++++..++++||++.+...... . .+++
T Consensus 283 ~~IR~at~~Dl~~I~~L~~~~~~~~---~~----~~~~~~~l~~~~---~~~~V~~~dg~iVG~~~~~~~~~~-~-~~~I 350 (429)
T TIGR01890 283 ESIRQATIDDIGGIAALIRPLEEQG---IL----VRRSREYLEREI---SEFSIIEHDGNIIGCAALYPYAEE-D-CGEM 350 (429)
T ss_pred hheEECCHHHHHHHHHHHHHHHHcC---Cc----hhhhHHHHHhhc---CcEEEEEECCEEEEEEEEEecCCC-C-eEEE
Confidence 4799999999999999875321111 11 112233333322 234555569999999999876432 2 2566
Q ss_pred e-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 100 G-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 100 ~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
. ++|+|+|||+|+|+.|++.+++++.+. ++..+.+. ..| +.+||+++||+..+..
T Consensus 351 ~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~--G~~~l~v~--~~~--a~~fY~k~GF~~~g~~ 406 (429)
T TIGR01890 351 ACLAVSPEYQDGGRGERLLAHIEDRARQM--GISRLFVL--TTR--TGHWFRERGFQTASVD 406 (429)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCEEEEe--ecc--hHHHHHHCCCEECChh
Confidence 4 789999999999999999999999887 99987643 334 6799999999998863
No 45
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3.8e-13 Score=84.37 Aligned_cols=146 Identities=18% Similarity=0.257 Sum_probs=110.4
Q ss_pred cCceecCceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCC-ceEEEeE-----C-----Cee
Q 047585 12 NGFVELSHISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHP-WFRAICV-----N-----NRP 80 (185)
Q Consensus 12 ~~~~~~~~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~-----~~~ 80 (185)
+..+.+.+++|.|.++.+.+.+.+|+.+....+..... +.+.++-.+.-..+..+.. ..|++.+ . ...
T Consensus 6 Nt~i~~~kvILVPYe~~HV~kYHeWMknEelr~LT~SE-~LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~M 84 (185)
T KOG4135|consen 6 NTKILGKKVILVPYEPCHVPKYHEWMKNEELRRLTASE-PLTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHM 84 (185)
T ss_pred ccEEecceEEEeeccccchhHHHhHhhhHHHHHhhcCC-CcchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhh
Confidence 44567889999999999999999999988877665433 3455555555555555433 5555543 1 225
Q ss_pred EEEEEeeeCCCCC-------CceeeeeEEEC-cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHc
Q 047585 81 VGATSVRPNSGND-------MCRAELGYVLA-SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKA 152 (185)
Q Consensus 81 iG~~~~~~~~~~~-------~~~~~~~~~v~-~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~ 152 (185)
||=+.+.-....+ -..+++-+.|. |.-||+|+|++++.+++.|+...+ ++.+..+.+..+|.+++++|+|+
T Consensus 85 vGDvNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l-~l~Ky~vkig~~nk~sl~lFkk~ 163 (185)
T KOG4135|consen 85 VGDVNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVL-KLDKYEVKIGMDNKPSLRLFKKF 163 (185)
T ss_pred ccceeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHh-hhheEEEEecCCCchHHHHHHHh
Confidence 7776665554332 11266667776 999999999999999999999998 99999999999999999999999
Q ss_pred CCeEEEE
Q 047585 153 GFKREGV 159 (185)
Q Consensus 153 GF~~~~~ 159 (185)
+|.....
T Consensus 164 ~f~q~~~ 170 (185)
T KOG4135|consen 164 LFTQVFY 170 (185)
T ss_pred hheeeee
Confidence 9987664
No 46
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.54 E-value=5.2e-14 Score=107.50 Aligned_cols=123 Identities=15% Similarity=0.206 Sum_probs=88.6
Q ss_pred ceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceee
Q 047585 19 HISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAE 98 (185)
Q Consensus 19 ~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~ 98 (185)
-+.||+++.+|++.+.+++....... +....+.+ .+... ...++++..++++||++.+...... .. ++
T Consensus 294 y~~IR~at~~D~~~I~~L~~~~~~~~---~~~~~~~~----~l~~~---~~~~~va~~dg~iVG~~~~~~~~~~-~~-~~ 361 (441)
T PRK05279 294 LEQLRRATIDDVGGILELIRPLEEQG---ILVRRSRE----QLERE---IDKFTVIERDGLIIGCAALYPFPEE-KM-GE 361 (441)
T ss_pred hHHeEeCCHHHHHHHHHHHHHHHHcC---CccccCHH----HHhcc---cCcEEEEEECCEEEEEEEEEEcCCC-Ce-EE
Confidence 37899999999999999875211111 11111222 22221 1235566669999999988776532 12 55
Q ss_pred e-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 99 L-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 99 ~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
+ .++|+|+|||+|+|+.+++.+++++.+. ++..+.+. |.++++||+++||+..+.
T Consensus 362 I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~--g~~~l~l~----~~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 362 MACLAVHPDYRGSGRGERLLKRIEQRARQL--GLKRLFVL----TTRTAHWFLERGFVPVDV 417 (441)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCEEEEe----cchHHHHHHHCcCEECCh
Confidence 6 4889999999999999999999999887 99988654 346899999999999886
No 47
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.54 E-value=6.2e-14 Score=110.78 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=88.1
Q ss_pred CceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCcee
Q 047585 18 SHISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRA 97 (185)
Q Consensus 18 ~~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~ 97 (185)
..+.||+++++|++.+.++....... ....+.+.+. +. .....++++..+|++||++.+...+. .. .
T Consensus 462 ~gm~IR~a~~~D~~~I~~L~~~~~~~---~~~~~~~~~~---l~----~~~~~~~Va~~~g~IVG~~~l~~~~~--~~-~ 528 (614)
T PRK12308 462 SGVKVRPARLTDIDAIEGMVAYWAGL---GENLPRSRNE---LV----RDIGSFAVAEHHGEVTGCASLYIYDS--GL-A 528 (614)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHhh---hcccccCHHH---Hh----cccCcEEEEEECCEEEEEEEEEEcCC--Ce-E
Confidence 45889999999999999986421110 0111112221 11 12234566666999999999876542 12 4
Q ss_pred ee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 98 EL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 98 ~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
++ .++|+|+|||+|+|+.|++.+++++++. |++.+.+.+ .+.+||+|+||+..++.
T Consensus 529 ~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~--g~~~i~l~~-----~a~~FYek~GF~~~~~~ 585 (614)
T PRK12308 529 EIRSLGVEAGWQVQGQGSALVQYLVEKARQM--AIKKVFVLT-----RVPEFFMKQGFSPTSKS 585 (614)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEee-----CcHHHHHHCCCEECCcc
Confidence 45 6889999999999999999999999887 999988764 24689999999988854
No 48
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.46 E-value=1.9e-12 Score=82.21 Aligned_cols=133 Identities=14% Similarity=0.182 Sum_probs=98.4
Q ss_pred eEeeeCCccCHHHHHHH--cCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeE-CCeeEEEEEeeeCCCC--CC
Q 047585 20 ISLRPLELSDIDDFMVW--VSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICV-NNRPVGATSVRPNSGN--DM 94 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iG~~~~~~~~~~--~~ 94 (185)
+.||.++.+|+-.+... ++.|+ --+..-|+-..+.-....+++.+ +|++||++...-.... ..
T Consensus 2 m~iR~ar~~DL~~mQ~~Nl~~lpE------------Nyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~ 69 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHCNLLNLPE------------NYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEP 69 (193)
T ss_pred cccccCCHHHHHHhhhcccccCcH------------HHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCC
Confidence 56888888887666542 22221 12233444444443445555554 8999999988766522 22
Q ss_pred ceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHH-HcCCeEEEEEeeEEE
Q 047585 95 CRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLE-KAGFKREGVLGKYFI 165 (185)
Q Consensus 95 ~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~-~~GF~~~~~~~~~~~ 165 (185)
..+.| ++.|..+||+.|+|+.++.+...-..+.+ +...+.++|..+|.+|+.+|+ .+||+..+....++-
T Consensus 70 ~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~-~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~kYYa 141 (193)
T KOG3235|consen 70 PHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVY-EAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYYA 141 (193)
T ss_pred CCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhh-cceEEEEeeecccHHHHHhhhhccceEEeeccccccc
Confidence 12444 68899999999999999999998888888 999999999999999999999 999999998776664
No 49
>PRK01346 hypothetical protein; Provisional
Probab=99.46 E-value=3.8e-12 Score=96.71 Aligned_cols=130 Identities=9% Similarity=0.000 Sum_probs=92.2
Q ss_pred ceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCC---C--
Q 047585 19 HISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGN---D-- 93 (185)
Q Consensus 19 ~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~---~-- 93 (185)
.+.||+++.+|++.+.++.... +. . ..+.+....+.... . ....+++..+|++||++.+...... .
T Consensus 6 ~~~iR~~~~~D~~~i~~L~~~~----f~-~--~~~~~~~~~~~~~~-~-~~~~~va~~~~~lvg~~~~~~~~~~~~~~~~ 76 (411)
T PRK01346 6 AITIRTATEEDWPAWFRAAATG----FG-D--SPSDEELEAWRALV-E-PDRTLGAFDGDEVVGTAGAFDLRLTVPGGAV 76 (411)
T ss_pred CceeecCCHHHHHHHHHHHHHH----cC-C--CCChHHHHHHHHhc-C-cCCeEEEEECCEEEEEEEEeccccccCCCCc
Confidence 4789999999999999987532 11 1 11344455555432 2 2345666678999999998754321 1
Q ss_pred -CceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEE
Q 047585 94 -MCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYF 164 (185)
Q Consensus 94 -~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~ 164 (185)
......++.|+|+|||+|+|++|++.+++.+++. |+..+.+.+.. .+||+|+||........+.
T Consensus 77 ~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~--g~~~~~L~~~~-----~~~Y~r~Gf~~~~~~~~~~ 141 (411)
T PRK01346 77 LPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRER--GEPVAALTASE-----GGIYGRFGYGPATYSQSLS 141 (411)
T ss_pred cceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHC--CCcEEEEECCc-----hhhHhhCCCeeccceEEEE
Confidence 1113446889999999999999999999999887 88777776543 3699999999887765443
No 50
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.45 E-value=4.3e-13 Score=89.08 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=111.2
Q ss_pred cCc-eEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCC-
Q 047585 17 LSH-ISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDM- 94 (185)
Q Consensus 17 ~~~-i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~- 94 (185)
.+. +.|++.++.++..+-.+..+-. +.+-...|++.........-++..++..+|...+.......+
T Consensus 13 ~~e~~~l~~it~~nl~~~~~l~~~~f-----------P~~y~~kfy~~~~~~~~~~~~A~~~~~~v~a~~~k~~~~~~~~ 81 (187)
T KOG3138|consen 13 ENELIELRLITPNNLKQLKQLNEDIF-----------PISYVDKFYPDVLSNGDLTQLAYYNEIAVGAVACKLIKFVQNA 81 (187)
T ss_pred cCcceeeccCCcchHHHHHHHhcccc-----------CcchHHHHHHHHHhcCCHHHhhhhccccccceeeeehhhhhhh
Confidence 344 9999999999999988876421 112223377777776665555555777888777777655432
Q ss_pred -----c--eeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEEC
Q 047585 95 -----C--RAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMK 167 (185)
Q Consensus 95 -----~--~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~ 167 (185)
. .....+.|.+.||.+|||+.++..+.+++...- -++.+++++...|..++.||++.||+..+....++...
T Consensus 82 ~r~~~~~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~-~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~~ 160 (187)
T KOG3138|consen 82 KRLFGNRVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAH-QCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSIL 160 (187)
T ss_pred hhhhccceeEEEeecccHHHHhcchHHHHHHHHHHHHhccc-ccceEEEEEEeCCCcHHHHHHhcCceEeeccccccccc
Confidence 0 123456689999999999999999999998772 38999999999999999999999999999988777666
Q ss_pred CeeeeeEEEE
Q 047585 168 GSTKDMVVFS 177 (185)
Q Consensus 168 g~~~d~~~~~ 177 (185)
+...+...+.
T Consensus 161 ~~~~~~~l~~ 170 (187)
T KOG3138|consen 161 GPPDDSFLRK 170 (187)
T ss_pred cCcchhhhhh
Confidence 5554544443
No 51
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.44 E-value=1.2e-11 Score=73.10 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=48.6
Q ss_pred eeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 99 LGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 99 ~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
-++++.|+|||+|+|+.++..+.+.+.+. |.. ..+.+..+|.+|+++|+|+||+....
T Consensus 25 ~~v~t~p~~RrrGlg~~lv~~l~~~~~~~--g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 25 GGVYTLPEHRRRGLGSALVAALARELLER--GKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp EEEEE-GGGTTSSHHHHHHHHHHHHHHHT--TSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHhC--CCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 35789999999999999999999999886 654 67889999999999999999998754
No 52
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.43 E-value=4.5e-12 Score=87.54 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=92.0
Q ss_pred cCceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCce
Q 047585 17 LSHISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCR 96 (185)
Q Consensus 17 ~~~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~ 96 (185)
+..+.+|.++..|.. +.....++.+.. .+...+..+.-........ ...+.+..+|++|..+......+. .
T Consensus 131 ~~~~~~r~a~~~D~~-i~~~~~~~~l~~---~g~~~~~~~~~~~~~a~g~--~~~~f~~~d~~iVa~A~t~a~~~~--~- 201 (268)
T COG3393 131 PEELDVRLAAAKDMF-IPEVGLRATLDD---FGRADSRKEAVAVLNALGR--SRTYFLEGDGKIVAKAETAAENPA--Y- 201 (268)
T ss_pred cccceeeeeeccccc-chheeeeeeecc---cccCcchHHHHHHHHHhhc--eeEEEEccCCcEEEeeeccccCCc--c-
Confidence 456778888888876 333333222222 2333344333333333322 233444446799999988766542 2
Q ss_pred eee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEE
Q 047585 97 AEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYF 164 (185)
Q Consensus 97 ~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~ 164 (185)
+.| |+++.|+|||+|+|+.++..+-+.+.+. |. .-.+.+..+|..|.+.|+|+||+..|+++.+.
T Consensus 202 ~~I~gV~T~peyR~kGyAt~lva~L~~~lL~e--Gk-~~~L~~~~~N~~A~~iY~riGF~~~g~~~~~~ 267 (268)
T COG3393 202 AQINGVYTHPEYRGKGYATALVATLAAKLLAE--GK-IPCLFVNSDNPVARRIYQRIGFREIGEFREYI 267 (268)
T ss_pred eEEEEEEcCHHHccccHHHHHHHHHHHHHHhC--CC-eeEEEEecCCHHHHHHHHHhCCeecceEEEEe
Confidence 455 7899999999999999999999988887 43 45566779999999999999999999877543
No 53
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.38 E-value=8.7e-12 Score=89.85 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=64.4
Q ss_pred eEEEeECCeeEEEEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHH
Q 047585 71 FRAICVNNRPVGATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLE 150 (185)
Q Consensus 71 ~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~ 150 (185)
+++..+++++||++.+... ..-.++|+|+|||+|+|++|++.+++++++. |+..+.+.+... +..||+
T Consensus 8 ~~v~~~~~~iVG~~~l~~~-------~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~--g~~~i~L~t~~~---~~~fYe 75 (297)
T cd02169 8 VGIFDDAGELIATGSIAGN-------VLKCVAVCPKYQGEGLALKIVSELINKAYEE--GIFHLFLFTKPK---NAKFFR 75 (297)
T ss_pred EEEEEECCEEEEEEEeccC-------EEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEEEccc---HHHHHH
Confidence 3344457999999988531 3346889999999999999999999999887 999999998655 468999
Q ss_pred HcCCeEEEEEe
Q 047585 151 KAGFKREGVLG 161 (185)
Q Consensus 151 ~~GF~~~~~~~ 161 (185)
|+||+..+...
T Consensus 76 k~GF~~~~~~~ 86 (297)
T cd02169 76 GLGFKELANAS 86 (297)
T ss_pred HCCCEEecccC
Confidence 99999988433
No 54
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.33 E-value=4.9e-11 Score=87.29 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHhc-C---CCCceEEEeECCeeEEEEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhC
Q 047585 53 NKEDGINYIKTKV-P---QHPWFRAICVNNRPVGATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEW 128 (185)
Q Consensus 53 ~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~ 128 (185)
..+++.+|+.+.. . +-..++++..+|++||++.+... ..-.++|+|+|||+|+|+.++..+++++++.
T Consensus 11 ~~~~v~~fL~~~~l~~d~~~d~~vv~~~~~~lVg~g~l~g~-------~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~- 82 (332)
T TIGR00124 11 KACGIKNFLHQNELSLDAPLEIFIAVYEDEEIIGCGGIAGN-------VIKCVAIDESLRGEGLALQLMTELENLAYEL- 82 (332)
T ss_pred HHHHHHHHHHhcCCcccCCCCEEEEEEECCEEEEEEEEecC-------EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHc-
Confidence 3556777887652 2 12355555569999999998421 3336889999999999999999999999887
Q ss_pred CCccEEEEEeccCCHhhHHHHHHcCCeEEEEEee
Q 047585 129 PHLERLEAVVDVENVASQRVLEKAGFKREGVLGK 162 (185)
Q Consensus 129 ~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~ 162 (185)
|+..+.+.+.+.| .+||+++||...+...+
T Consensus 83 -G~~~l~l~Tk~~~---~~fy~klGF~~i~~~~~ 112 (332)
T TIGR00124 83 -GRFHLFIFTKPEY---AALFEYCGFKTLAEAKD 112 (332)
T ss_pred -CCCEEEEEECchH---HHHHHHcCCEEeeeecc
Confidence 9999999987665 57999999999887663
No 55
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.31 E-value=1.4e-11 Score=80.73 Aligned_cols=82 Identities=22% Similarity=0.205 Sum_probs=67.1
Q ss_pred CeeEEEEEeeeCCCCCCce-eeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeE
Q 047585 78 NRPVGATSVRPNSGNDMCR-AELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKR 156 (185)
Q Consensus 78 ~~~iG~~~~~~~~~~~~~~-~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~ 156 (185)
+.+||+..+...-...... ...-+-|.++|||+|||+.|++.+..-+... ..++|.++|...|.+|+.||.++||..
T Consensus 102 ~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~--~~~kVmLTVf~~N~~al~Fy~~~gf~~ 179 (202)
T KOG2488|consen 102 SKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSR--HMRKVMLTVFSENIRALGFYHRLGFVV 179 (202)
T ss_pred CceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHH--HhhhheeeeecccchhHHHHHHcCccc
Confidence 3899999998876533211 1112448899999999999999999998776 889999999999999999999999988
Q ss_pred EEEEe
Q 047585 157 EGVLG 161 (185)
Q Consensus 157 ~~~~~ 161 (185)
....+
T Consensus 180 ~~~sp 184 (202)
T KOG2488|consen 180 DEESP 184 (202)
T ss_pred CCCCC
Confidence 76554
No 56
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.28 E-value=2e-10 Score=81.14 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=80.4
Q ss_pred CceEeeeCCccCHHHHHH-HcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCce
Q 047585 18 SHISLRPLELSDIDDFMV-WVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCR 96 (185)
Q Consensus 18 ~~i~ir~~~~~D~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~ 96 (185)
+.+.|+++.++.++.... -++. .+. . .....+.|++. +..+++..+|++|+.|.-..... ..
T Consensus 127 ~~y~l~~Ide~l~~~~~~e~~s~----d~~--~---~~~s~e~Fl~~-----G~Gf~i~~~~~iVs~~~s~~~~~--~~- 189 (265)
T PF12746_consen 127 EGYELKRIDEELYENSLEEEWSE----DLV--S---QFSSYEDFLKN-----GFGFCILHDGEIVSGCSSYFVYE--NG- 189 (265)
T ss_dssp TTCEEEE--HHHHHHHHHSCCCG----GGT--T---TSSSHHHHHHH-------EEEEEETTEEEEEEEEEEEET--TE-
T ss_pred CCeEEEECCHHHHHhhhhhHhHH----HHH--H---hcCCHHHHHhc-----CcEEEEEECCEEEEEEEEEEEEC--CE-
Confidence 457788887766665542 1111 111 1 11234456654 56788888898887554433332 12
Q ss_pred eeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEE
Q 047585 97 AELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIM 166 (185)
Q Consensus 97 ~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~ 166 (185)
.+|++...|+|||+|+|+.+...++..|.+. |+.-.+- + .|.+|+++-+|+||+....+..+...
T Consensus 190 ~EI~I~T~~~yR~kGLA~~~aa~~I~~Cl~~--~l~P~WD-c--~N~~S~~lA~kLGf~~~~~Y~~Y~v~ 254 (265)
T PF12746_consen 190 IEIDIETHPEYRGKGLATAVAAAFILECLEN--GLYPSWD-C--HNLASIALAEKLGFHFDFEYTAYEVN 254 (265)
T ss_dssp EEEEEEE-CCCTTSSHHHHHHHHHHHHHHHT--T-EEE-E-E--SSHHHHHHHHHCT--EEEEEEEE---
T ss_pred EEEEEEECHHhhcCCHHHHHHHHHHHHHHHC--CCCcCee-C--CCHHHHHHHHHcCCcccceeeeeeec
Confidence 8999999999999999999999999999988 6544322 3 69999999999999999988866543
No 57
>PRK13688 hypothetical protein; Provisional
Probab=99.27 E-value=1.4e-10 Score=76.21 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=56.5
Q ss_pred CceEEEeECCeeEEEEEeeeCCCC-------CCceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEecc
Q 047585 69 PWFRAICVNNRPVGATSVRPNSGN-------DMCRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDV 140 (185)
Q Consensus 69 ~~~~~~~~~~~~iG~~~~~~~~~~-------~~~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~ 140 (185)
..++++..++++||++.+...+.. ....+++ .++|+|+|||+|+|++|++.+. +. ++. + .+..
T Consensus 45 ~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~----~~--~~~-~--~~~~ 115 (156)
T PRK13688 45 SPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAK----SF--QLP-I--KTIA 115 (156)
T ss_pred CCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHH----Hh--CCe-E--EEEe
Confidence 345666678999999887543311 1111444 4789999999999999987543 33 443 2 3344
Q ss_pred CCHhhHHHHHHcCCeEEEEE
Q 047585 141 ENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 141 ~N~~a~~~y~~~GF~~~~~~ 160 (185)
.| .+.+||+|+||+..+..
T Consensus 116 ~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 116 RN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred cc-chHHHHHhCCCEEeEEe
Confidence 45 47899999999998876
No 58
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.27 E-value=1.2e-10 Score=74.12 Aligned_cols=133 Identities=15% Similarity=0.175 Sum_probs=91.6
Q ss_pred EeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeE-CCeeEEEEEeeeCCCCCCceeee
Q 047585 21 SLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICV-NNRPVGATSVRPNSGNDMCRAEL 99 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iG~~~~~~~~~~~~~~~~~ 99 (185)
++||+..+|+-..-.+.-++....+ ...-...++..+ ...+.+... ++++-|++.-.........++.+
T Consensus 3 t~r~f~~~Dlf~fNninLDpltEt~-------~~~Fyl~yl~~~---pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~Hv 72 (173)
T KOG3234|consen 3 TIRPFTPQDLFKFNNINLDPLTETF-------PISFYLIYLAIW---PEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHV 72 (173)
T ss_pred ccccccHHHHHhhcccccccccccc-------ceehhHHHHHhC---hHHhEeccCCCCceEEEEeeeccccCcceeeEE
Confidence 5788888887766555555443322 111111222222 222333333 78899998885544333222444
Q ss_pred -eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEE
Q 047585 100 -GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFI 165 (185)
Q Consensus 100 -~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~ 165 (185)
.+.|.|+||+.|+|+.++..+++..... +.--+.+.|..+|..|+.+|+++||..-.+..+++.
T Consensus 73 TAltVap~~Rrl~la~~lm~~led~~d~~--~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi~YY~ 137 (173)
T KOG3234|consen 73 TALTVAPDYRRLGLAAKLMDTLEDVSDVD--NAYFVDLFVRVSNQIAIDMYKKLGYSVYRTVIEYYS 137 (173)
T ss_pred EEEEechhHHHHHHHHHHHHHHHHHHHhh--hhheeeeeeeccchhHHHHHHhcCceEEEeeeeeec
Confidence 4779999999999999999999988665 778899999999999999999999998887777764
No 59
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.25 E-value=2.4e-10 Score=75.30 Aligned_cols=127 Identities=12% Similarity=0.067 Sum_probs=90.5
Q ss_pred ceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCC-CCceEEEeECCeeEEEEEeeeCCCCCCce-
Q 047585 19 HISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQ-HPWFRAICVNNRPVGATSVRPNSGNDMCR- 96 (185)
Q Consensus 19 ~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iG~~~~~~~~~~~~~~- 96 (185)
.+.||+.++.|.+.+.++...... ..........++..... ....++..++|++||.+.++...-.....
T Consensus 3 ~~~ir~e~~~d~~~i~~~~~~aF~--------~~~e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~ 74 (171)
T COG3153 3 MMLIRTETPADIPAIEALTREAFG--------PGREAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEELG 74 (171)
T ss_pred ccEEEecChhhHHHHHHHHHHHhh--------cchHHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCcccc
Confidence 478999999999999987653221 11233444444443322 23555666689999999999876542211
Q ss_pred -eeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 97 -AELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 97 -~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
..++ +.|+|++||+|||++++...++.++.. |...+.+.=++ .+|.++||+......
T Consensus 75 ~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~--G~~~v~vlGdp------~YY~rfGF~~~~~~~ 133 (171)
T COG3153 75 WLGLAPLAVDPEYQGQGIGSALVREGLEALRLA--GASAVVVLGDP------TYYSRFGFEPAAGAK 133 (171)
T ss_pred eEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHC--CCCEEEEecCc------ccccccCcEEccccc
Confidence 1222 669999999999999999999999887 88887775443 389999999988654
No 60
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.17 E-value=7.7e-10 Score=71.59 Aligned_cols=134 Identities=13% Similarity=0.147 Sum_probs=89.8
Q ss_pred cCceecCceEeeeCCc--cCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeE--CCeeEEEEEee
Q 047585 12 NGFVELSHISLRPLEL--SDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICV--NNRPVGATSVR 87 (185)
Q Consensus 12 ~~~~~~~~i~ir~~~~--~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iG~~~~~ 87 (185)
++......+.+.|+.. +-+++-..+.++ .| . .+......-+.+..+.-+...++.. ..++||...+.
T Consensus 5 tpapS~~~l~~vPiH~rPELlk~~~~LIN~----eW---P--RS~TsR~hSL~~ScDs~P~sL~Ll~E~~~~VigH~rLS 75 (225)
T KOG3397|consen 5 TPAPSMPDLFFVPLHDRPELLKESMTLINS----EW---P--RSDTSREHSLKKSCDSPPMSLLLLNEENDEVLGHSRLS 75 (225)
T ss_pred CCCCCCCcceeEeccccHHHHHHHHHHHhc----cC---C--ccchhhhhhhhcccCCCCeeeeeecccccceeeeeccc
Confidence 3344556677777642 223333444443 22 1 1223333344444443444444443 57899999999
Q ss_pred eCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 88 PNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
........-+.-++.|+.+.||+|+|+.+++.++.|++.. +++++++.+... -+||+++||+...-.
T Consensus 76 ~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~--gf~~~yLsT~DQ----~~FYe~lGYe~c~Pi 142 (225)
T KOG3397|consen 76 HLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREK--GFNEAYLSTDDQ----CRFYESLGYEKCDPI 142 (225)
T ss_pred cCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHh--hhhheeeecccc----hhhhhhhcccccCce
Confidence 9886554322236889999999999999999999999998 899999988764 789999999986644
No 61
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.05 E-value=3e-09 Score=67.00 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=69.0
Q ss_pred CceEEEeE-CCeeEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhH
Q 047585 69 PWFRAICV-NNRPVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQ 146 (185)
Q Consensus 69 ~~~~~~~~-~~~~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 146 (185)
...+.... +|++++++.+.+....... ..|| +.|.|++||+|+|.+++..+++.+.+.+ .-+.+++..- ....
T Consensus 49 ~~Hl~~~~~~g~LvAyaRLl~~~~~~~~-~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~-p~~~v~l~AQ---ahLq 123 (155)
T COG2153 49 TRHLLGWTPDGELVAYARLLPPGAEYEE-VSIGRVIVSPAARGQGLGQQLMEKALETAGREW-PDKPVYLGAQ---AHLQ 123 (155)
T ss_pred cceEEEEcCCCeEEEEEecCCCCCCcCc-eeeeeEEECHhhhccchhHHHHHHHHHHHHhhC-CCCCeEEehH---HHHH
Confidence 34445555 9999999999887654443 5576 6789999999999999999999999987 4566777653 4589
Q ss_pred HHHHHcCCeEEEE
Q 047585 147 RVLEKAGFKREGV 159 (185)
Q Consensus 147 ~~y~~~GF~~~~~ 159 (185)
.||.+.||...+.
T Consensus 124 ~fYa~~GFv~~~e 136 (155)
T COG2153 124 DFYASFGFVRVGE 136 (155)
T ss_pred HHHHHhCcEEcCc
Confidence 9999999999884
No 62
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.03 E-value=1.2e-09 Score=63.54 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=61.5
Q ss_pred CCeeEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCe
Q 047585 77 NNRPVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFK 155 (185)
Q Consensus 77 ~~~~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~ 155 (185)
+|++|.++..... ++++ -+..|+|||||+.+.++....+++.+. |+. ++.+|.++|+.++++.+++||.
T Consensus 7 eG~PVSW~lmdqt-------ge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~--g~P-~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 7 EGNPVSWSLMDQT-------GEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKL--GFP-FYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred CCCEeEEEEeccc-------ccccccccCHhHhcCCHHHHHHHHHHHHHHHC--CCC-eEeehHhccHHHHHHHHHCCCe
Confidence 7888888877654 4444 347899999999999999999999776 887 8999999999999999999998
Q ss_pred EEE
Q 047585 156 REG 158 (185)
Q Consensus 156 ~~~ 158 (185)
...
T Consensus 77 ~~p 79 (89)
T PF08444_consen 77 FMP 79 (89)
T ss_pred ecC
Confidence 754
No 63
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.99 E-value=6.6e-09 Score=57.34 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=50.5
Q ss_pred EEeECCeeEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEE
Q 047585 73 AICVNNRPVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEA 136 (185)
Q Consensus 73 ~~~~~~~~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~ 136 (185)
++..+++++|++.+...+..... ..++ +.++|+|||+|+|++++..+++++++. +++.+.+
T Consensus 3 ~~~~~~~~ig~~~~~~~~~~~~~-~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~--~~~~v~~ 64 (65)
T cd04301 3 VAEDDGEIVGFASLSPDGSGGDT-AYIGDLAVLPEYRGKGIGSALLEAAEEEARER--GAKRLRL 64 (65)
T ss_pred EEecCCEEEEEEEEEecCCCCcc-EEEEEEEECHHHcCcCHHHHHHHHHHHHHHHc--CCcEEEe
Confidence 44458999999999988753333 6776 889999999999999999999999885 8888765
No 64
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.98 E-value=6.3e-09 Score=80.50 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=62.5
Q ss_pred CCeeEEEEEeeeCCCCC-----Cce---eeeeEE---------ECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEec
Q 047585 77 NNRPVGATSVRPNSGND-----MCR---AELGYV---------LASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVD 139 (185)
Q Consensus 77 ~~~~iG~~~~~~~~~~~-----~~~---~~~~~~---------v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~ 139 (185)
++.+||++.+....... ... .++.++ ..++|||+|+|+.|++.+++++++. |+..+.+..
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~--G~~~i~v~s- 498 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEE--GSEKILVIS- 498 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHC--CCCEEEEee-
Confidence 57899999998775421 001 233333 3589999999999999999999887 999998743
Q ss_pred cCCHhhHHHHHHcCCeEEEEEe
Q 047585 140 VENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 140 ~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
|..+++||+|+||+..+...
T Consensus 499 --~~~A~~FY~klGf~~~g~ym 518 (522)
T TIGR01211 499 --GIGVREYYRKLGYELDGPYM 518 (522)
T ss_pred --CchHHHHHHHCCCEEEccee
Confidence 78999999999999888653
No 65
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.72 E-value=2.1e-07 Score=57.87 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=64.8
Q ss_pred eCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceeeee-EE
Q 047585 24 PLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAELG-YV 102 (185)
Q Consensus 24 ~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~-~~ 102 (185)
.+++.|.-++..++. ..+.+.. +.........++..-|++++|.+.+...... +.+. +.
T Consensus 9 ~ls~Qd~iDL~KIwp------------~~~~~~l----~~~l~~~~~l~aArFNdRlLgAv~v~~~~~~----~~L~~l~ 68 (128)
T PF12568_consen 9 TLSEQDRIDLAKIWP------------QQDPEQL----EQWLDEGHRLFAARFNDRLLGAVKVTISGQQ----AELSDLC 68 (128)
T ss_dssp S--HHHHHHHHHH-T------------TS--------------SSEEEEEEEETTEEEEEEEEEEETTE----EEEEEEE
T ss_pred CCCHHHHHHHHHhCC------------CCCHHHH----HHHhccCCeEEEEEechheeeeEEEEEcCcc----eEEeeEE
Confidence 345556666666651 1223333 3333445566777779999999999986542 6664 77
Q ss_pred ECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC---C-HhhHHHHHHcCCeEE
Q 047585 103 LASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE---N-VASQRVLEKAGFKRE 157 (185)
Q Consensus 103 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~---N-~~a~~~y~~~GF~~~ 157 (185)
|.+.-|++|+|..|++.+.+.+ |+++.+.+..... + ...-.|++.+||...
T Consensus 69 VRevTRrRGVG~yLlee~~rq~----p~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 69 VREVTRRRGVGLYLLEEVLRQL----PDIKHWWLADEGVEPQDRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp E-TT-SSSSHHHHHHHHHHHHS-----S--EEEE--TT-S--THHHHHHHHHHHT-EE-
T ss_pred EeeccccccHHHHHHHHHHHHC----CCCcEEEEecCCCcccchHHHHHHHHHcCcccc
Confidence 9999999999999998887754 5888888876632 2 456689999999653
No 66
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.58 E-value=1.6e-06 Score=50.18 Aligned_cols=70 Identities=10% Similarity=0.123 Sum_probs=48.3
Q ss_pred EEEeECCeeEEEEEeeeCCCCCCceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHH
Q 047585 72 RAICVNNRPVGATSVRPNSGNDMCRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLE 150 (185)
Q Consensus 72 ~~~~~~~~~iG~~~~~~~~~~~~~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~ 150 (185)
|.+..+|+.+|.+.+.... .. ..+ ...|.|++||+|+|+.|++.+++++.++ +.+ |.. .-+-+.++++
T Consensus 2 F~~~~~g~~~a~l~Y~~~~---~~-~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~--~~k-v~p----~C~y~~~~~~ 70 (78)
T PF14542_consen 2 FELKDDGEEIAELTYREDG---GV-IVITHTEVPPELRGQGIAKKLVEAALDYAREN--GLK-VVP----TCSYVAKYFR 70 (78)
T ss_dssp EEEESSTTEEEEEEEEESS---SE-EEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHT--T-E-EEE----TSHHHHHHHH
T ss_pred EEEEECCEEEEEEEEEeCC---CE-EEEEEEEECccccCCcHHHHHHHHHHHHHHHC--CCE-EEE----ECHHHHHHHH
Confidence 3445578899999997732 22 333 5679999999999999999999999887 654 333 3344566665
Q ss_pred Hc
Q 047585 151 KA 152 (185)
Q Consensus 151 ~~ 152 (185)
++
T Consensus 71 ~h 72 (78)
T PF14542_consen 71 RH 72 (78)
T ss_dssp H-
T ss_pred hC
Confidence 53
No 67
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.52 E-value=1.7e-06 Score=52.78 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=59.4
Q ss_pred ceEEEeECCeeEEEEEeeeCCCCCCce-eee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHH
Q 047585 70 WFRAICVNNRPVGATSVRPNSGNDMCR-AEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQR 147 (185)
Q Consensus 70 ~~~~~~~~~~~iG~~~~~~~~~~~~~~-~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~ 147 (185)
..+.+..+|.+||++.+-......... ..+ .++|...|||+|+|++++.++.... -....+.+...|.+|+.
T Consensus 38 ~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~------~g~w~Va~i~EN~PA~~ 111 (143)
T COG5628 38 EAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSA------WGVWQVATVRENTPARA 111 (143)
T ss_pred ceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHh------hceEEEEEeccCChhHH
Confidence 455666699999999987765433221 222 2778999999999999988885533 22355667788999999
Q ss_pred HHHHcCCeE
Q 047585 148 VLEKAGFKR 156 (185)
Q Consensus 148 ~y~~~GF~~ 156 (185)
|+++.-...
T Consensus 112 fwK~~~~t~ 120 (143)
T COG5628 112 FWKRVAETY 120 (143)
T ss_pred HHHhhhccc
Confidence 999987754
No 68
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.47 E-value=1.8e-06 Score=53.63 Aligned_cols=127 Identities=16% Similarity=0.095 Sum_probs=83.2
Q ss_pred eEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeC----CCCC--
Q 047585 20 ISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPN----SGND-- 93 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~----~~~~-- 93 (185)
+.++.....|.++++.+.+...+. -.....+....++.+. |+...+|.+.|++.-... ++.+
T Consensus 8 ~~~~D~~apd~aavLaLNNeha~e-----lswLe~erL~~l~~eA-------F~ArR~G~l~afl~tFd~~a~ydSpNFl 75 (167)
T COG3818 8 ILIRDVRAPDLAAVLALNNEHALE-----LSWLELERLYRLYKEA-------FVARRDGNLAAFLVTFDSSARYDSPNFL 75 (167)
T ss_pred eehhhhcCCchhhHHhccchhhhh-----ccccCHHHHHHHHHHH-------HHHhhccchhhheeeccccccCCCCcee
Confidence 556777777999998887643321 1123445555555442 233335555554433322 2211
Q ss_pred -------Cceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEec--cCCHhhHHHHHHcCCeEEEEEe
Q 047585 94 -------MCRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVD--VENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 94 -------~~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~--~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
.. ..+ .+.|....||+|+|+++.+-+.+++... |...+.+.|. +.|+.|-.|...+||.++|...
T Consensus 76 WFrErYe~F-~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~a--gy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ 150 (167)
T COG3818 76 WFRERYENF-FYVDRVVVASRARGRGVARALYADLFSYAELA--GYPYLTCEVNLDPPNPASDAFHAALGFHEVGQAT 150 (167)
T ss_pred ehhhhCCce-EEEEEEEEEecccccchHHHHHHHHHHHHHhc--CCceEEEEecCCCCChHHHHHhhhcCceEccceE
Confidence 00 112 2457789999999999999999999777 7888877764 6799999999999999999643
No 69
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.46 E-value=9.1e-07 Score=59.83 Aligned_cols=119 Identities=8% Similarity=0.031 Sum_probs=68.3
Q ss_pred ChHHHHHHHHHhcCCCCceEEEeECC--eeEEEEEeeeCCCCCC------------------------------c----e
Q 047585 53 NKEDGINYIKTKVPQHPWFRAICVNN--RPVGATSVRPNSGNDM------------------------------C----R 96 (185)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iG~~~~~~~~~~~~------------------------------~----~ 96 (185)
++.+....+.. ++...+++..++ +++|.+.+........ . .
T Consensus 14 sPnDL~~LlDa---P~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g 90 (196)
T PF13718_consen 14 SPNDLQLLLDA---PNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSG 90 (196)
T ss_dssp -HHHHHHHHH----TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEE
T ss_pred CHHHHHHHhcC---CcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcc
Confidence 45565555543 344556666677 9999998876543210 0 0
Q ss_pred -eeeeEEECcccccccHHHHHHHHHHHHHh-------------------------hhCCCccEEEEEeccCCHhhHHHHH
Q 047585 97 -AELGYVLASKYWGKGIATQAVKIVTKTIF-------------------------DEWPHLERLEAVVDVENVASQRVLE 150 (185)
Q Consensus 97 -~~~~~~v~~~~rg~G~g~~l~~~~~~~~~-------------------------~~~~~~~~i~~~~~~~N~~a~~~y~ 150 (185)
-.+.+.|+|++|++|+|+++++.+.+++. .. +++.+-+.- --+..-.+||.
T Consensus 91 ~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~vDylGtSF-G~t~~Ll~FW~ 167 (196)
T PF13718_consen 91 ARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPP--GVDYLGTSF-GATPELLKFWQ 167 (196)
T ss_dssp EEEEEEEE-CCC-SSSHHHHHHHHHHHT-------------------------------S-SEEEEEE-E--HHHHHHHH
T ss_pred eeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccc--CCCEEEecc-CCCHHHHHHHH
Confidence 12236799999999999999999999993 33 777666643 44688999999
Q ss_pred HcCCeEEEEEeeEEEECCeeeeeEEEE
Q 047585 151 KAGFKREGVLGKYFIMKGSTKDMVVFS 177 (185)
Q Consensus 151 ~~GF~~~~~~~~~~~~~g~~~d~~~~~ 177 (185)
|+||.++..-.......|.+.-+++..
T Consensus 168 k~gf~pv~l~~~~n~~SGe~S~imlr~ 194 (196)
T PF13718_consen 168 KNGFVPVYLGQTRNEASGEHSAIMLRP 194 (196)
T ss_dssp CTT-EEEEE-SS--TTT---EEEEEEE
T ss_pred HCCcEEEEEecCcccccCceeeeEEee
Confidence 999999876554443456665555443
No 70
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=98.33 E-value=1.9e-06 Score=55.03 Aligned_cols=129 Identities=11% Similarity=0.077 Sum_probs=81.5
Q ss_pred CceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhc-CCCCce---------EEEeECCeeEEEEEee
Q 047585 18 SHISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKV-PQHPWF---------RAICVNNRPVGATSVR 87 (185)
Q Consensus 18 ~~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~iG~~~~~ 87 (185)
..+.|||..++|.+.+..+-+. .+ + .+.-...+.+.... +-...+ +.-...+.+||.+.-.
T Consensus 10 ~~~~irp~i~e~~q~~~~Lea~----~F-P----e~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs 80 (190)
T KOG4144|consen 10 EAPRIRPGIPESCQRRHTLEAS----EF-P----EDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGS 80 (190)
T ss_pred ccccCCCCChHHHHHHhccccc----cC-C----hhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcc
Confidence 3478999999998877766432 22 1 11111112222111 111111 1111278899999887
Q ss_pred eCCCCC------------Cceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCC
Q 047585 88 PNSGND------------MCRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGF 154 (185)
Q Consensus 88 ~~~~~~------------~~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF 154 (185)
..+.+. .+...+ .+.|+|+||.+|+|+.++..-+++.-++- -.+++.+-+. .+...||+++||
T Consensus 81 ~~~~E~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~-i~~r~~Li~h---~pLvPFYEr~gF 156 (190)
T KOG4144|consen 81 LWDKERLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQP-IVRRAALICH---DPLVPFYERFGF 156 (190)
T ss_pred cCcchhhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCc-cccceeeeec---CCccchhHhcCc
Confidence 776532 111222 46689999999999999999888876663 6677777664 458889999999
Q ss_pred eEEEE
Q 047585 155 KREGV 159 (185)
Q Consensus 155 ~~~~~ 159 (185)
+.+|.
T Consensus 157 k~vgp 161 (190)
T KOG4144|consen 157 KAVGP 161 (190)
T ss_pred eeecc
Confidence 99986
No 71
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=98.03 E-value=8.1e-05 Score=46.30 Aligned_cols=108 Identities=12% Similarity=0.177 Sum_probs=86.3
Q ss_pred CCCceEEEeECCeeEEEEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhH
Q 047585 67 QHPWFRAICVNNRPVGATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQ 146 (185)
Q Consensus 67 ~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 146 (185)
++..++.+...+.++|+..+...... ..++.-.-+|++|| ++.+.-...-+|+.+.. .+..+...+...-.-.+
T Consensus 36 ~~~~Y~gVyeg~~l~Gi~~v~~i~~~---~vecHa~y~P~fRG--~a~~~~~~F~kwlL~Ns-~f~~vit~vp~kt~~Gr 109 (151)
T PF11039_consen 36 PDQLYLGVYEGGQLGGIVYVEEIQPS---VVECHAMYDPGFRG--YALEIGRLFCKWLLENS-PFQNVITFVPDKTRYGR 109 (151)
T ss_pred CccEEEEEEeceEEEEEEEEEEEeee---eEEEEeeeccccch--hHHHHHHHHHHHHhcCC-ceeEEEEecccccccch
Confidence 45566777778999999999887642 25555567899998 99988888889998887 88888888877777777
Q ss_pred HHHHHcCCeEEEEEeeEEEECCeeeeeEEEEeccCCC
Q 047585 147 RVLEKAGFKREGVLGKYFIMKGSTKDMVVFSLLSTDP 183 (185)
Q Consensus 147 ~~y~~~GF~~~~~~~~~~~~~g~~~d~~~~~~~~~~~ 183 (185)
-.-+-+|.+.+|..++++ .+.. |+-+|+++|+++
T Consensus 110 vic~llg~~RVG~id~~~-~g~~--~vTlYq~tReel 143 (151)
T PF11039_consen 110 VICRLLGARRVGHIDDYF-KGVD--GVTLYQLTREEL 143 (151)
T ss_pred hHhhhhCCceeeeHHHHh-cCCC--ceEEEEccHHHH
Confidence 778889999999999866 3333 999999999875
No 72
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.03 E-value=3.1e-05 Score=56.39 Aligned_cols=88 Identities=14% Similarity=0.051 Sum_probs=65.2
Q ss_pred CCceEEEeECCeeEEEEEeeeCCCCC-----CceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCC
Q 047585 68 HPWFRAICVNNRPVGATSVRPNSGND-----MCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVEN 142 (185)
Q Consensus 68 ~~~~~~~~~~~~~iG~~~~~~~~~~~-----~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N 142 (185)
....+++..+.++++.....+..-.. ...+..++.+.|.|||+|..++|+...++...+. |+.-..++.
T Consensus 38 ~~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~k--G~p~s~L~P---- 111 (389)
T COG4552 38 EPNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARK--GYPVSALHP---- 111 (389)
T ss_pred CCcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHc--CCeeEEecc----
Confidence 34566777788888877776443211 1114446778999999999999999999999888 888666643
Q ss_pred HhhHHHHHHcCCeEEEEEee
Q 047585 143 VASQRVLEKAGFKREGVLGK 162 (185)
Q Consensus 143 ~~a~~~y~~~GF~~~~~~~~ 162 (185)
.+.++|+|.||..-+....
T Consensus 112 -~s~~iYrKfGye~asn~~~ 130 (389)
T COG4552 112 -FSGGIYRKFGYEYASNYHE 130 (389)
T ss_pred -CchhhHhhccccccceEEE
Confidence 4688999999998876543
No 73
>PRK10456 arginine succinyltransferase; Provisional
Probab=98.01 E-value=9.9e-05 Score=54.10 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=63.2
Q ss_pred eEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcC---------CCCceEEEeE--CCeeEEEEEeee
Q 047585 20 ISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVP---------QHPWFRAICV--NNRPVGATSVRP 88 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--~~~~iG~~~~~~ 88 (185)
+.|||++.+|++.|.++......- + ...+.+.+...+.++.... +..+.+++++ .|++||++++..
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG~G-~--TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a 78 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTGGG-L--TSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEV 78 (344)
T ss_pred eEEecCccccHHHHHHHHHHcCCC-c--ccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEe
Confidence 689999999999999987643321 1 1223344544444433222 2236666665 699999998876
Q ss_pred CCCCCCc---------------------------------eeee-eEEECcccccccHHHHHHHHHHHHH
Q 047585 89 NSGNDMC---------------------------------RAEL-GYVLASKYWGKGIATQAVKIVTKTI 124 (185)
Q Consensus 89 ~~~~~~~---------------------------------~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~ 124 (185)
.-+.... ..++ +++++|+||+.|.|+.|-..=.-++
T Consensus 79 ~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~RfLFi 148 (344)
T PRK10456 79 AVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFM 148 (344)
T ss_pred cccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHHHHHHH
Confidence 5332100 0233 4779999999999886655443333
No 74
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.00 E-value=2.5e-05 Score=46.94 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=48.3
Q ss_pred CCceEEEeECCeeEEEEEeeeCCCCCCceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEE
Q 047585 68 HPWFRAICVNNRPVGATSVRPNSGNDMCRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERL 134 (185)
Q Consensus 68 ~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i 134 (185)
....+.+..+|+.+|.+......... ..+ .-.|.+++||||+|+.|+..+++.+++. +.+-+
T Consensus 14 ~~~~y~~~~~G~~~~e~~y~~~~~~~---i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~--g~kii 76 (99)
T COG2388 14 ENGRYVLTDEGEVIGEATYYDRGENL---IIIDHTYVPDELRGQGIAQKLVEKALEEAREA--GLKII 76 (99)
T ss_pred CceEEEEecCCcEEEEEEEecCCCCE---EEEecCcCCHHHcCCcHHHHHHHHHHHHHHHc--CCeEc
Confidence 44566677799999999998876431 333 3458999999999999999999999887 66543
No 75
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=98.00 E-value=6.5e-05 Score=55.16 Aligned_cols=102 Identities=19% Similarity=0.223 Sum_probs=57.4
Q ss_pred eEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcC-----------CCCceEEEeE--CCeeEEEEEe
Q 047585 20 ISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVP-----------QHPWFRAICV--NNRPVGATSV 86 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~--~~~~iG~~~~ 86 (185)
+.|||++.+|++.|.++...... .+ ..-+.+.+...+.++.... +..+.+++++ +|++||++.+
T Consensus 2 ~viRp~~~~Dl~aL~~LA~~sg~-G~--TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I 78 (342)
T PF04958_consen 2 LVIRPARPSDLDALYALARESGP-GF--TSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAI 78 (342)
T ss_dssp EEEEE--GGGHHHHHHHHHHS-T-T---TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEE
T ss_pred eEEecCchhhHHHHHHHHHHcCC-Cc--ccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeE
Confidence 68999999999999998764322 11 1223344444433332211 1226667776 7999999988
Q ss_pred eeCCCCCCc---------------------------------eeee-eEEECcccccccHHHHHHHHHHHHH
Q 047585 87 RPNSGNDMC---------------------------------RAEL-GYVLASKYWGKGIATQAVKIVTKTI 124 (185)
Q Consensus 87 ~~~~~~~~~---------------------------------~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~ 124 (185)
...-+.... ..++ +++++|+||+.|.|+.|-..=.-++
T Consensus 79 ~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFi 150 (342)
T PF04958_consen 79 EAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFI 150 (342)
T ss_dssp ESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHH
T ss_pred EeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHH
Confidence 765443211 0333 4778999999999987766554444
No 76
>PHA00432 internal virion protein A
Probab=97.98 E-value=6.4e-05 Score=47.58 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=66.2
Q ss_pred eEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHH-HHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceee
Q 047585 20 ISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYI-KTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAE 98 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~ 98 (185)
+.|||++.+|+..+ .+..+ + .++.+.+- .....++..++.+..+|.+++.++ +. +.
T Consensus 1 m~I~paT~~di~~~-~lr~~-D------------~~E~~a~g~~~~~~~s~~~~~~~~~G~~~aI~G------n~---G~ 57 (137)
T PHA00432 1 MYIRQTTERDFDVF-NPSFE-D------------ILEAKAYGIEPSFPPDSECVTLSLDGFVLAIGG------NQ---GD 57 (137)
T ss_pred CccccccHHHHHHc-CCCHH-H------------HHHHHhcCCCCCCCCCceEEEEecCCeEEEEec------CC---CC
Confidence 46889999988888 33221 1 11111100 011112334556666999998883 11 11
Q ss_pred eeEEECccc-cc--ccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 99 LGYVLASKY-WG--KGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 99 ~~~~v~~~~-rg--~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
--|+|..+. .+ +..-++....+..+....+-....+.-.|...|..+++|.+.+||+....
T Consensus 58 ~vW~v~T~~v~~~~~~~~reF~k~~~~~ld~ml~~yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 58 QVWFVTSDQVWRLTKKEKREFRKLIMEYRDMMLDQYPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred ceEEEecHHhhhCChhhhHHHHHHHHHHHHHHHHhhhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 113343221 11 13334555555444422111567889999999999999999999998776
No 77
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=97.94 E-value=0.00087 Score=44.99 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=72.2
Q ss_pred eCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeE--CCeeEEEEEeeeCCCCC----Ccee
Q 047585 24 PLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICV--NNRPVGATSVRPNSGND----MCRA 97 (185)
Q Consensus 24 ~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iG~~~~~~~~~~~----~~~~ 97 (185)
-+..+-++.+..+..+. ++ ....++...|-+..-. +-.+.+++. ..++|+.+.+....+.+ ....
T Consensus 9 NP~~e~~d~fmk~~g~~---r~-----~Fk~~Di~~wk~sf~~-~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~ 79 (181)
T PF06852_consen 9 NPPQEYFDQFMKLHGNE---RW-----NFKRNDIKLWKESFDD-DYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQ 79 (181)
T ss_pred CCCHHHHHHHHHHhcCC---cc-----cccHHHHHHHHHhhcc-CeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeE
Confidence 34556677777777642 11 1235555555555422 223333333 67789888887655422 1124
Q ss_pred eee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHH-HcCCeEEEE
Q 047585 98 ELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLE-KAGFKREGV 159 (185)
Q Consensus 98 ~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~-~~GF~~~~~ 159 (185)
.+| +|+.|+|||+|+++.+...+.+..+.. +-+ ..+. .|..+.++|. -+||...+.
T Consensus 80 ~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~~--~~N-~~~~---~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 80 FIGFFWIDPEYRGKGIMKLQDDICMDELDSV--DDN-SVAQ---GNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred EEeeeeeCCcccCcchHHHHHHHHHHHhccC--CCc-eeee---cCHHHHHHHHHHhCCCCCcc
Confidence 556 569999999999976666665555432 333 3333 3667888886 589877775
No 78
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.92 E-value=4.9e-05 Score=61.16 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=57.2
Q ss_pred EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeeeeEEEE
Q 047585 101 YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKDMVVFS 177 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~~~ 177 (185)
+.|+|++|++|||+++++.+.+++.+ +++.+... .-.++.-.+||.|+||.++..-...-...|.+.-+++-.
T Consensus 537 IAvhPe~q~~GiGsrlL~~l~~~a~~---~~Dwlgvs-FG~t~~L~rFW~rnGF~pVhls~~rn~~SGeys~i~lkp 609 (758)
T COG1444 537 IAVHPELQRMGIGSRLLALLIEEARK---GLDWLGVS-FGYTEELLRFWLRNGFVPVHLSPTRNASSGEYTAIVLKP 609 (758)
T ss_pred EEeCHHHHhcCHHHHHHHHHHHHHhc---CCCEEeec-cCCCHHHHHHHHHcCeEEEEecCccCcCCCceeEEEEec
Confidence 66899999999999999999999963 67766554 455788999999999999887665544567765555443
No 79
>PHA01733 hypothetical protein
Probab=97.92 E-value=1.3e-05 Score=51.50 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=73.2
Q ss_pred EeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCC-ceEEEeECCeeEEEEEeeeCCCCCCceeee
Q 047585 21 SLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHP-WFRAICVNNRPVGATSVRPNSGNDMCRAEL 99 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ 99 (185)
.|||++.+|+..++.-....+..+...... +.. .+...+.... ..+.+..+|+++|.++... +...+ .-.
T Consensus 4 ~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~--~p~----~l~~~~~~s~~~v~~~~~nG~l~aI~Gv~~-d~~~~--vG~ 74 (153)
T PHA01733 4 NNRPATQADATEVAQNLRQEDREEIEGLGH--SPL----ALHLSLDVSENVVAFVAPDGSLAGVAGLVE-DMGNR--VGE 74 (153)
T ss_pred ccccccHHHHHHHHccCCHHHHHHHHHhCC--Ccc----cchhhhhccccceEEEecCCcEEEEecccc-cccCC--CCc
Confidence 578999999877776333323322221111 111 2222222233 3345555999999999987 32222 112
Q ss_pred eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 100 GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
-|+|..+.-.+ +-++.+..+-.++.+.- ....+.-.|.+.|..+++|++.+||+......
T Consensus 75 pWlV~T~~v~k-~~~~f~re~r~~l~e~~-~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~~~ 134 (153)
T PHA01733 75 IWMVCTPAIEK-NPIALLRGAKWWLPKSR-NYDLLWNIVDKRNLVHRKLLRKLGFKGLRYVQ 134 (153)
T ss_pred eeEEecHHhHh-CCHHHHHHHHHHHHHhc-cccHHHHhHhcccHHHHHHHHHcCceeecccc
Confidence 24443221111 22333444444333222 67889999999999999999999999877543
No 80
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.90 E-value=2.4e-05 Score=48.36 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=40.2
Q ss_pred EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCC
Q 047585 101 YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGF 154 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF 154 (185)
++|.|++||+|+|+.++..+++++... ++. .|..+..++.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~--g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKR--GIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHc--Cce--------ehHHHHHHHHhcCC
Confidence 789999999999999999999999776 655 68899999999999
No 81
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.89 E-value=0.00028 Score=50.27 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=65.3
Q ss_pred eEEEeE-CCeeEEEEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHH
Q 047585 71 FRAICV-NNRPVGATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVL 149 (185)
Q Consensus 71 ~~~~~~-~~~~iG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y 149 (185)
+.++.. ++++|++.++.-. ..-.+.|++.+||-|++-.++..+++.+.+. |...+.+.+-+. ..++|
T Consensus 38 ~v~~~~~~~~iiacGsiaGn-------vikcvAvs~s~qGeGl~lkl~TeLin~ay~~--g~~hLFiyTKp~---~~~lF 105 (352)
T COG3053 38 FVAIYRDNEEIIACGSIAGN-------VIKCVAVSESLQGEGLALKLVTELINLAYER--GRTHLFIYTKPE---YAALF 105 (352)
T ss_pred EEEEEcCCCcEEEecccccc-------eeEEEEechhcccccHHHHHHHHHHHHHHHc--CCceEEEEechh---HHHHH
Confidence 334443 5999999887643 3335779999999999999999999999887 899999988655 67899
Q ss_pred HHcCCeEEEEEeeE
Q 047585 150 EKAGFKREGVLGKY 163 (185)
Q Consensus 150 ~~~GF~~~~~~~~~ 163 (185)
+.+||.........
T Consensus 106 k~~GF~~i~~~~~~ 119 (352)
T COG3053 106 KQCGFSEIASAENV 119 (352)
T ss_pred HhCCceEeeccCce
Confidence 99999988776655
No 82
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.85 E-value=6.3e-05 Score=57.10 Aligned_cols=130 Identities=12% Similarity=0.225 Sum_probs=92.1
Q ss_pred ceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeE-----CCeeEEEEEeeeCCCCC
Q 047585 19 HISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICV-----NNRPVGATSVRPNSGND 93 (185)
Q Consensus 19 ~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iG~~~~~~~~~~~ 93 (185)
++++++....+++.+.++.+.. .++.-.....+.+++.++.+. ++...+.+.. |+-+||++.+......
T Consensus 413 ~l~vs~~de~~i~RIsQLtqkT--NQFnlTtkRy~e~dV~~~~~~---~~~li~sv~l~DKfgDnGiigvviv~kk~~~- 486 (574)
T COG3882 413 RLTVSKFDEVNIPRISQLTQKT--NQFNLTTKRYNEEDVRQMQED---PNFLIFSVSLKDKFGDNGIIGVVIVEKKESE- 486 (574)
T ss_pred EEEEeeccccCcHHHHHHhhcc--cceeechhhhcHHHHHHHhhC---CCeEEEEEEeccccccCceEEEEEEEecCCe-
Confidence 5889999999999999998743 222222334456666663322 1222333332 6678999988877643
Q ss_pred Cceeeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEecc--CCHhhHHHHHHcCCeEEEE
Q 047585 94 MCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDV--ENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 94 ~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~--~N~~a~~~y~~~GF~~~~~ 159 (185)
+.+. +.+.-..-|+++=.+++..+++.|... |++.+.....+ .|.+-..||+++||+..++
T Consensus 487 ---w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~--gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~e 550 (574)
T COG3882 487 ---WFIDTFLMSCRVLGRKVEQRLMNSLEEQALSE--GINTIRGYYIPTEKNAPVSDFYERMGFKLKGE 550 (574)
T ss_pred ---EEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcceeeeEecccccCCcHHHHHHHhccccccc
Confidence 4553 444556668999999999999999887 99999887764 5889999999999996663
No 83
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=97.80 E-value=0.00031 Score=51.50 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=61.3
Q ss_pred EeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcC---------CCCceEEEeE--CCeeEEEEEeeeC
Q 047585 21 SLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVP---------QHPWFRAICV--NNRPVGATSVRPN 89 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--~~~~iG~~~~~~~ 89 (185)
.|||++.+|++.|.++......- + ...+.+.+...+.++...+ +..+.+++++ .|++||++++...
T Consensus 1 vvRPv~~~Dl~aL~~LA~~sg~G-~--TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~ 77 (336)
T TIGR03244 1 IVRPVETSDLDALYQLAQSTGIG-L--TSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAA 77 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCC-c--ccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEec
Confidence 37999999999999987653321 1 1223344444444433222 1236666665 6999999988765
Q ss_pred CCCCCc---------------------------------eeee-eEEECcccccccHHHHHHHHHHHH
Q 047585 90 SGNDMC---------------------------------RAEL-GYVLASKYWGKGIATQAVKIVTKT 123 (185)
Q Consensus 90 ~~~~~~---------------------------------~~~~-~~~v~~~~rg~G~g~~l~~~~~~~ 123 (185)
-+.... ..++ +++++|+||+.|.|+.|-..=.-+
T Consensus 78 vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~RfLF 145 (336)
T TIGR03244 78 VGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKSRFLF 145 (336)
T ss_pred ccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHHHHHH
Confidence 332100 0333 477999999999988665543333
No 84
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=97.77 E-value=0.00031 Score=51.43 Aligned_cols=101 Identities=9% Similarity=0.111 Sum_probs=60.9
Q ss_pred EeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcC----------CCCceEEEeE--CCeeEEEEEeee
Q 047585 21 SLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVP----------QHPWFRAICV--NNRPVGATSVRP 88 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~iG~~~~~~ 88 (185)
.|||++.+|++.|.++......- + ...+.+.+...+.++.... +..+.+++++ .|++||++++..
T Consensus 1 viRpv~~~Dl~aL~~LA~~sG~G-~--TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a 77 (336)
T TIGR03245 1 IVRPSRFADLPAIERLANESAIG-V--TSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVA 77 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCC-c--ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEe
Confidence 37999999999999987643321 1 1123344444333332211 2336667765 699999998876
Q ss_pred CCCCCCc---------------------------------eeee-eEEECcccccccHHHHHHHHHHHHH
Q 047585 89 NSGNDMC---------------------------------RAEL-GYVLASKYWGKGIATQAVKIVTKTI 124 (185)
Q Consensus 89 ~~~~~~~---------------------------------~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~ 124 (185)
.-+.... ..++ +++++|+||+.|.|+.|-..=.-++
T Consensus 78 ~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~RfLFi 147 (336)
T TIGR03245 78 SAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRARLLFM 147 (336)
T ss_pred cccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHHHHHHH
Confidence 5332100 0333 4779999999999886655444333
No 85
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=97.72 E-value=0.00041 Score=50.78 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=60.5
Q ss_pred EeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHh-------cC--CCCceEEEeE--CCeeEEEEEeeeC
Q 047585 21 SLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTK-------VP--QHPWFRAICV--NNRPVGATSVRPN 89 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~--~~~~iG~~~~~~~ 89 (185)
.|||++.+|++.|.++......- + ...+.+.+...+.++.. .. +..+.+++++ .|++||++++...
T Consensus 1 vvRpv~~~Dl~aL~~LA~~sg~G-~--TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~ 77 (335)
T TIGR03243 1 IVRPVRTSDLDALMQLARESGIG-L--TSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAA 77 (335)
T ss_pred CcccCccccHHHHHHHHHHcCCC-c--ccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEec
Confidence 37999999999999987643321 1 11223344333333221 11 2236666765 6999999988765
Q ss_pred CCCCCc---------------------------------eeee-eEEECcccccccHHHHHHHHHHHHH
Q 047585 90 SGNDMC---------------------------------RAEL-GYVLASKYWGKGIATQAVKIVTKTI 124 (185)
Q Consensus 90 ~~~~~~---------------------------------~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~ 124 (185)
-+.... ..++ +++++|+||+.|.|+.|-..=.-++
T Consensus 78 vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~RfLFi 146 (335)
T TIGR03243 78 VGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRSRFLFI 146 (335)
T ss_pred ccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHHHHHHH
Confidence 332100 0333 4779999999999987655444333
No 86
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.43 E-value=0.004 Score=39.90 Aligned_cols=116 Identities=7% Similarity=0.002 Sum_probs=73.4
Q ss_pred ceEeeeC-CccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCC-ceEEEeECCeeEEEEEeeeCCCCCCce
Q 047585 19 HISLRPL-ELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHP-WFRAICVNNRPVGATSVRPNSGNDMCR 96 (185)
Q Consensus 19 ~i~ir~~-~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iG~~~~~~~~~~~~~~ 96 (185)
.+.++.. .++|++.+++++............+..+.+-...++......+. ..+++..+|++||+......... -
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~~~~~~~-~-- 95 (142)
T PF13480_consen 19 GVRFEVATDPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALGFRHGGT-L-- 95 (142)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEEEEECCE-E--
Confidence 3555543 56678888887653222220111223345555555555433333 44445559999999988776532 1
Q ss_pred eeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEec
Q 047585 97 AELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVD 139 (185)
Q Consensus 97 ~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~ 139 (185)
...-...+|+++..+.|..++..+++++.+. |++.+.+...
T Consensus 96 ~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~--g~~~~d~g~g 136 (142)
T PF13480_consen 96 YYWYGGYDPEYRKYSPGRLLLWEAIRWAIER--GLRYFDFGGG 136 (142)
T ss_pred EEEEEEECHhhHhCCHHHHHHHHHHHHHHHC--CCCEEEECCC
Confidence 1122336899999999999999999999988 9988877553
No 87
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=97.30 E-value=0.013 Score=39.78 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=65.0
Q ss_pred CCCceEEEeECCeeEEEEEeeeCCCCC------------------Cceeeee-EEECccccc------ccHHHHHHHHHH
Q 047585 67 QHPWFRAICVNNRPVGATSVRPNSGND------------------MCRAELG-YVLASKYWG------KGIATQAVKIVT 121 (185)
Q Consensus 67 ~~~~~~~~~~~~~~iG~~~~~~~~~~~------------------~~~~~~~-~~v~~~~rg------~G~g~~l~~~~~ 121 (185)
.+..+.+...+|+++|++.+.+..... ...+|++ ++|+++..+ .-+...++..+.
T Consensus 43 ~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~ 122 (182)
T PF00765_consen 43 PDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMV 122 (182)
T ss_dssp TT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHH
T ss_pred CCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHH
Confidence 344455555689999999999875421 1226764 778877432 246789999999
Q ss_pred HHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCee
Q 047585 122 KTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGST 170 (185)
Q Consensus 122 ~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~ 170 (185)
+++.+. |++.++..+. .+..+++.+.||.....-. ....+|..
T Consensus 123 e~a~~~--gi~~~v~V~~---~~~~r~l~r~G~~~~~lG~-~~~~~~~~ 165 (182)
T PF00765_consen 123 EFALSN--GIRHIVGVVD---PAMERILRRAGWPVRRLGP-PRSIGGER 165 (182)
T ss_dssp HHHHCT--T-SEEEEEEE---HHHHHHHHHCT-EEEESSE-EEEETTEE
T ss_pred HHHHHC--CCCEEEEEEC---hHHHHHHHHcCCceEECCC-CeeeCCeE
Confidence 999888 9999988774 6689999999998755322 22245543
No 88
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.02 E-value=0.0013 Score=36.78 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.3
Q ss_pred eEEECcccccccHHHHHHHHHHHHH
Q 047585 100 GYVLASKYWGKGIATQAVKIVTKTI 124 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~l~~~~~~~~ 124 (185)
.+||+|.+|++|||+.|++.+.+..
T Consensus 10 RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 10 RIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeChhhhhhhHHHHHHHHHHHhc
Confidence 3889999999999999999998764
No 89
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=96.82 E-value=0.011 Score=36.65 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=48.8
Q ss_pred CCeeEEEEEeeeC-----CCCCCce------eeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhh
Q 047585 77 NNRPVGATSVRPN-----SGNDMCR------AELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVAS 145 (185)
Q Consensus 77 ~~~~iG~~~~~~~-----~~~~~~~------~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a 145 (185)
.|.++|+.-+-.. +...... +.+.++|+++.|++|+|++|++.+++. + ++.--.+.++......
T Consensus 17 ~g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~---e--~~~p~~~a~DrPS~Kl 91 (120)
T PF05301_consen 17 KGAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQE---E--NVSPHQLAIDRPSPKL 91 (120)
T ss_pred CceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHH---c--CCCcccceecCCcHHH
Confidence 3668887755432 2211110 345789999999999999999999884 3 4444566677777888
Q ss_pred HHHHHHc
Q 047585 146 QRVLEKA 152 (185)
Q Consensus 146 ~~~y~~~ 152 (185)
.+|++|+
T Consensus 92 l~Fl~Kh 98 (120)
T PF05301_consen 92 LSFLKKH 98 (120)
T ss_pred HHHHHHh
Confidence 8888764
No 90
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=96.81 E-value=0.059 Score=34.45 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=71.3
Q ss_pred eEeeeCCccCHHHHHHHc------CCccceeccCC---CCCCChHHHHHHHHHhcCCCCceEEEe-ECCeeEEEEEeeeC
Q 047585 20 ISLRPLELSDIDDFMVWV------SDPKVARFCPW---ESYTNKEDGINYIKTKVPQHPWFRAIC-VNNRPVGATSVRPN 89 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iG~~~~~~~ 89 (185)
+.+|++.+.|++.+..+- .+|.......- ....+.-...+|+.+ ....|+.. .++.+.|++.....
T Consensus 1 M~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~R----sgHSFvA~~e~~~~~GfvLAQaV 76 (161)
T PF09390_consen 1 MRYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYER----SGHSFVAEDEGGELQGFVLAQAV 76 (161)
T ss_dssp -EEE---GGGHHHHHHC--------------------STTS---HHHHHHHHC----CS--EEEE-ETTEEEEEEEEEEE
T ss_pred CcccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhhc----cCCcEEEEccCCceeeeeehhHH
Confidence 468999999999998762 12322221111 112233344455554 34456666 68999999999988
Q ss_pred CCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEE
Q 047585 90 SGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREG 158 (185)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~ 158 (185)
...++.+..+.-.+.++-+......-++..+.+-+-+. ++-.+.+.+.+ ....-.+.-||...+
T Consensus 77 WQGdrptVlV~ri~~~~~~~~~~~~GLLrAvvKSAYDa--~VYEv~l~l~p---~l~~A~~a~~~~~~~ 140 (161)
T PF09390_consen 77 WQGDRPTVLVRRILLAPGEPEEVYEGLLRAVVKSAYDA--GVYEVHLHLDP---ELEAAARAEGFRLGG 140 (161)
T ss_dssp E-SSSEEEEEEEE---EESSHHHHHHHHHHHHHHHHHT--T-SEEEE---T---HHHHHHHHTT----S
T ss_pred hcCCCceEEEEEeecCCCCcHHHHHHHHHHHHHhhhcc--ceEEEEeeCCH---HHHHHHhhcccccCC
Confidence 87776545554444555566778888889999888888 89999998877 566667888998766
No 91
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=96.77 E-value=0.0062 Score=43.91 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeeeeEEEEeccCCCC
Q 047585 111 GIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKDMVVFSLLSTDPK 184 (185)
Q Consensus 111 G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~ 184 (185)
|-...++..+.+.|.++ |+.+|.+.|... ....|++.||..++..+.++ +|. |.+.|+...+++|
T Consensus 21 ~~~~~~~~~~~~~a~~~--~~~ki~~~~~~~---~~~~~~~~g~~~e~~i~~~f--~g~--~~~~~~~~~~~~r 85 (266)
T TIGR03827 21 NDVEALIPDLDALAKKE--GYTKIIAKVPGS---DKPLFEERGYLEEAKIPGYF--NGH--DAYFMSKYLDEDR 85 (266)
T ss_pred ccHHHHHHHHHHHHHHc--CCcEEEEEccHH---HHHHHHHCCCeEEEeccccc--CCC--ceEEEEEcCchHh
Confidence 44678899999999888 999999999877 48899999999999988544 563 8899999888765
No 92
>PHA00771 head assembly protein
Probab=96.68 E-value=0.022 Score=35.46 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=75.2
Q ss_pred CceEEEeECCeeEEEEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHH
Q 047585 69 PWFRAICVNNRPVGATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRV 148 (185)
Q Consensus 69 ~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~ 148 (185)
..++.+...|+.=|.+.+...... ..++.-.-+|++||+-- +.-...-+|+.+.. .+..+...+...-.-.+-.
T Consensus 38 ~~Y~g~~~~~~yeGivl~~eV~p~---~~ecHa~y~P~fRG~ya--~~~r~F~kwlL~Nt-~f~~vit~vp~kt~~G~vi 111 (151)
T PHA00771 38 CRYFEVNVHGQFGGIVYYNEIQPL---TFDCHAMYLPEIRGFSK--EIGLAFWRYILTNT-TVQCVTSFAARKFRHGQMY 111 (151)
T ss_pred cEEEeecccceeeeEEEEEEeeeE---EEEEEeeeCccccchhH--HHHHHHHHHHhcCC-ceeEEEEecccccccchhh
Confidence 344554456777777775544322 14444456899997532 55566666776776 7888888777777777777
Q ss_pred HHHcCCeEEEEEeeEEEECCeeeeeEEEEeccCCC
Q 047585 149 LEKAGFKREGVLGKYFIMKGSTKDMVVFSLLSTDP 183 (185)
Q Consensus 149 y~~~GF~~~~~~~~~~~~~g~~~d~~~~~~~~~~~ 183 (185)
-+-+|.+.+|..++++ .++ .|+-+|+++|++.
T Consensus 112 c~lig~rRVG~id~a~-~g~--~~vT~Yq~TR~~~ 143 (151)
T PHA00771 112 CAMIGLKRVGTIKKYF-KGV--DDVTFYSATREEL 143 (151)
T ss_pred hhhhCCceeeeHHHHh-cCC--CceEEEEcCHHHH
Confidence 7889999999999887 344 7999999999864
No 93
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=96.67 E-value=0.0037 Score=47.58 Aligned_cols=78 Identities=13% Similarity=0.263 Sum_probs=56.9
Q ss_pred CCeeEEEEEeeeCCCCCCceeeee----------EE-----E---CcccccccHHHHHHHHHHHHHhhhCCCccEEEEEe
Q 047585 77 NNRPVGATSVRPNSGNDMCRAELG----------YV-----L---ASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVV 138 (185)
Q Consensus 77 ~~~~iG~~~~~~~~~~~~~~~~~~----------~~-----v---~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~ 138 (185)
++.+||+..+......... .++. ++ | ...||.+|+|++|++.++..|++. +..+|.+..
T Consensus 415 ~d~lig~lrlR~p~e~~~r-~e~~~~~aivrelhvyg~~vpig~~~~~~QH~G~G~~L~~~AE~ia~ee--~~~ki~viS 491 (515)
T COG1243 415 NDILIGFLRLREPSEGAHR-EEIDDKTAIVRELHVYGSEVPIGKREDEWQHRGYGRELLEEAERIAREE--GAKKILVIS 491 (515)
T ss_pred hhhhhheeeecccccchhh-hhcccchhhhhhhhccccccccccCcchhhcccHHHHHHHHHHHHHHhh--ccccEEEEe
Confidence 4678999998877652111 1111 11 2 367899999999999999999988 677776543
Q ss_pred ccCCHhhHHHHHHcCCeEEEEE
Q 047585 139 DVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 139 ~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
-..++..|.|+||...|-+
T Consensus 492 ---giG~ReYy~k~GY~~~gpY 510 (515)
T COG1243 492 ---GIGVREYYRKLGYELDGPY 510 (515)
T ss_pred ---cccHHHHHHHhCccccCCc
Confidence 4569999999999988754
No 94
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=96.60 E-value=0.15 Score=36.27 Aligned_cols=83 Identities=12% Similarity=0.112 Sum_probs=59.9
Q ss_pred ceEEEeE--CCeeEEEEEeeeCCCC---------------------------CCceeeee-EEECcccccc--------c
Q 047585 70 WFRAICV--NNRPVGATSVRPNSGN---------------------------DMCRAELG-YVLASKYWGK--------G 111 (185)
Q Consensus 70 ~~~~~~~--~~~~iG~~~~~~~~~~---------------------------~~~~~~~~-~~v~~~~rg~--------G 111 (185)
..+++.. +|++||++.+...... ....++++ ++|++++|++ |
T Consensus 56 ~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~ 135 (241)
T TIGR03694 56 VHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSG 135 (241)
T ss_pred cEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCccccccccc
Confidence 3444443 5899999999874200 01226664 7799999873 1
Q ss_pred --------------------HHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEE
Q 047585 112 --------------------IATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKRE 157 (185)
Q Consensus 112 --------------------~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~ 157 (185)
+...|+..+.+++.+. |++.++..+.+ ...+++.+.|+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~--Gi~~~~~v~~~---~l~r~l~r~G~~~~ 196 (241)
T TIGR03694 136 VGVIETEAPFSESERRRFPHIPLGLYLGLIALSSAN--GITHWYAIMEP---RLARLLSRFGIQFR 196 (241)
T ss_pred ccccccccccchhhcccCchHHHHHHHHHHHHHHHC--CCcEEEEEeCH---HHHHHHHHhCCceE
Confidence 5577999999999887 99999887754 57889999998653
No 95
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=96.43 E-value=0.17 Score=35.05 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=55.8
Q ss_pred CCeeEEEEEeeeCCCC------------------CCceeeee-EEECcccc---ccc----HHHHHHHHHHHHHhhhCCC
Q 047585 77 NNRPVGATSVRPNSGN------------------DMCRAELG-YVLASKYW---GKG----IATQAVKIVTKTIFDEWPH 130 (185)
Q Consensus 77 ~~~~iG~~~~~~~~~~------------------~~~~~~~~-~~v~~~~r---g~G----~g~~l~~~~~~~~~~~~~~ 130 (185)
+|+++|++-+.+.... ....+|++ ++|+++++ +.+ +...|+..+.+++... |
T Consensus 62 ~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~--G 139 (207)
T PRK13834 62 SGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMAN--G 139 (207)
T ss_pred CCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHC--C
Confidence 7899999988665321 11226775 77988753 222 5678999999999887 9
Q ss_pred ccEEEEEeccCCHhhHHHHHHcCCeEE
Q 047585 131 LERLEAVVDVENVASQRVLEKAGFKRE 157 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~~~GF~~~ 157 (185)
++.++..+.+ ...+++.++|+...
T Consensus 140 i~~~~~v~~~---~~~r~l~r~G~~~~ 163 (207)
T PRK13834 140 YTEIVTATDL---RFERILARAGWPMQ 163 (207)
T ss_pred CCEEEEEECH---HHHHHHHHcCCCeE
Confidence 9999887744 57789999998763
No 96
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.42 E-value=0.021 Score=46.01 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=54.1
Q ss_pred eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEE-------Eecc--------------------------------
Q 047585 100 GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEA-------VVDV-------------------------------- 140 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~-------~~~~-------------------------------- 140 (185)
.+.|+|+|++.|+|+++++.+.+|...++..+..=.. .+.+
T Consensus 619 RIAvhP~y~~MGYGsrAvqLL~~y~eG~~~~i~e~~~~~~~~~k~v~e~~~vsllee~i~pR~~lppLL~~L~er~perl 698 (1011)
T KOG2036|consen 619 RIAVHPEYQKMGYGSRAVQLLTDYFEGKFTSISEDVLAVDHSIKRVEEAEKVSLLEEQIKPRKDLPPLLLKLSERPPERL 698 (1011)
T ss_pred EEEeccchhccCccHHHHHHHHHHHhccCCCccccccccCccccccchhhhhhhhhhhcccccCCCceeeEcccCCCccc
Confidence 4779999999999999999999998655322220000 0000
Q ss_pred --------CCHhhHHHHHHcCCeEEEEEeeEEEECCeeeeeEEEEec
Q 047585 141 --------ENVASQRVLEKAGFKREGVLGKYFIMKGSTKDMVVFSLL 179 (185)
Q Consensus 141 --------~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~~~~~ 179 (185)
--....+||+++||.+....+..--+-|....+.+-.+.
T Consensus 699 dylGvSfGLT~~L~kFWk~~gF~PvylrQt~n~lTGEHtcimLk~L~ 745 (1011)
T KOG2036|consen 699 DYLGVSFGLTPSLLKFWKKNGFVPVYLRQTSNDLTGEHTCIMLKTLE 745 (1011)
T ss_pred ceeeecccCCHHHHHHHHhcCceeEEeeccccccccceeEEEEecCC
Confidence 135678999999999998766554455766665555544
No 97
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.16 Score=35.23 Aligned_cols=100 Identities=12% Similarity=0.042 Sum_probs=66.1
Q ss_pred HHHHhcCCCCceEEEeE-CCeeEEEEEeeeCCCCCCceeeee--EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEE
Q 047585 60 YIKTKVPQHPWFRAICV-NNRPVGATSVRPNSGNDMCRAELG--YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEA 136 (185)
Q Consensus 60 ~~~~~~~~~~~~~~~~~-~~~~iG~~~~~~~~~~~~~~~~~~--~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~ 136 (185)
.+............... +|++||...-.+.-. ......-+ ..|.|++++.|+|-+|-..--+++... |+..+..
T Consensus 37 ~i~al~~~GGlvlgAf~~dg~lVGls~G~pg~r-~g~~y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~~~--G~tli~W 113 (266)
T COG3375 37 TIRALRYHGGLVLGAFSADGRLVGLSYGYPGGR-GGSLYLYSHMLGVREEVKGSGLGVALKMKQRERALSM--GYTLIAW 113 (266)
T ss_pred HHHHHHhcCCeEEEEEcCCCcEEEEEeccCCcC-CCceeeeeeehhccccccccchhhhhHHHHHHHHHhc--CeeeEEE
Confidence 34333334555555555 669999988777221 11101112 348899999999999999989999887 9999999
Q ss_pred EeccCCHhhHHH-HHHcCCeEEEEEee
Q 047585 137 VVDVENVASQRV-LEKAGFKREGVLGK 162 (185)
Q Consensus 137 ~~~~~N~~a~~~-y~~~GF~~~~~~~~ 162 (185)
+-++-|.....| ..|+|-......++
T Consensus 114 TfDPl~alNA~fNi~KLGa~artYi~n 140 (266)
T COG3375 114 TFDPLNALNARFNISKLGAIARTYIKN 140 (266)
T ss_pred ecccchhhhhhcchhhhceeEEEeecc
Confidence 988888643333 45777655444443
No 98
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=96.31 E-value=0.19 Score=35.67 Aligned_cols=101 Identities=9% Similarity=0.022 Sum_probs=70.1
Q ss_pred CChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCc
Q 047585 52 TNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHL 131 (185)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~ 131 (185)
.+.++...|+..... .........+|++||.+.+...+.. - .-+-.+-+|++-..++|+-++-.-+++|++. |.
T Consensus 128 ~~~~~y~~Fl~~~~~-~t~~~ey~~~g~LiaVav~D~l~d~--l-SAVY~FyDPd~~~~SLG~~~iL~qI~~ak~~--gl 201 (240)
T PRK01305 128 PSRDQYAQFLEDSWV-NTRFIEFRGDGKLVAVAVTDVLDDG--L-SAVYTFYDPDEEHRSLGTFAILWQIELAKRL--GL 201 (240)
T ss_pred CCHHHHHHHHhcCCC-CcEEEEEEeCCeEEEEEEEeccCCc--e-eeEEEeeCCCccccCCHHHHHHHHHHHHHHc--CC
Confidence 467777788776443 2233333349999999988776532 1 3345567999999999999999999999876 99
Q ss_pred cEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 132 ERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 132 ~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
..+++.-.-.+- .++-=|.-|++...+
T Consensus 202 ~y~YLGY~I~~c--~kM~YK~~f~P~E~l 228 (240)
T PRK01305 202 PYVYLGYWIKGS--RKMNYKARFRPLEIL 228 (240)
T ss_pred CeEeeeEEECCC--CcccccccCCcceee
Confidence 999998776553 334445566655443
No 99
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.24 E-value=0.066 Score=32.38 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=45.3
Q ss_pred EEeECCeeEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHh
Q 047585 73 AICVNNRPVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVA 144 (185)
Q Consensus 73 ~~~~~~~~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~ 144 (185)
.+..++...|++.+......... +.++ +.|.++.||+|+|..++..+.+ +...+...+.++|+.
T Consensus 12 ~~y~~e~y~~~aIvt~~~~~~~~-~yLdKfaV~~~~~g~gvad~vf~~i~~-------d~~~L~Wrsr~~n~~ 76 (99)
T cd04264 12 AIYLSEGYNAAAIVTYEGVNNGV-PYLDKFAVSSSAQGEGTSDALWRRLRR-------DFPKLFWRSRKTNPI 76 (99)
T ss_pred EEEEeCCceEEEEEeccCCCCCc-eEEEEEEEchhhhhcChHHHHHHHHHh-------hCCceEEEeCCCCcc
Confidence 34446777888887665432222 5664 8899999999999888888855 345677788888764
No 100
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=96.23 E-value=0.01 Score=43.68 Aligned_cols=52 Identities=15% Similarity=0.315 Sum_probs=44.1
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
.+||.+|+|..+++.++..|++.. |..++.+... ...++.|.|+||+.+|.+
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EH-gS~KiavISG---VGtR~YY~klGY~LdGPY 548 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEH-GSGKIAVISG---VGTRNYYRKLGYELDGPY 548 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhc-CCCceEEEec---cchHHHHHhhCeeecChh
Confidence 589999999999999999999987 8888766543 457899999999998754
No 101
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=96.17 E-value=0.17 Score=32.22 Aligned_cols=99 Identities=8% Similarity=0.040 Sum_probs=68.8
Q ss_pred ChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCcc
Q 047585 53 NKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLE 132 (185)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~ 132 (185)
+.++...++..... .........+|++||.+.+...+.. - .-+-.+-+|++....+|+-++-.-+++|++. |.+
T Consensus 24 ~~~~y~~fl~~~~~-~t~~~~~~~~~kLiav~v~D~l~~g--l-SaVY~fyDPd~~~~SlG~~~iL~eI~~a~~~--~l~ 97 (128)
T PF04377_consen 24 SQEQYRRFLCSSPL-GTYHLEYRLDGKLIAVAVVDILPDG--L-SAVYTFYDPDYSKRSLGTYSILREIELAREL--GLP 97 (128)
T ss_pred CHHHHHHHHhCCCC-CCEEEEEEeCCeEEEEEEeecccch--h-hheeeeeCCCccccCcHHHHHHHHHHHHHHc--CCC
Confidence 46777777765433 3344444459999999888766532 1 2344557999999999999999999999876 999
Q ss_pred EEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 133 RLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 133 ~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
.+++.-.-.+ ..++-=|..|++...
T Consensus 98 y~YLGY~I~~--c~kM~YK~~f~P~e~ 122 (128)
T PF04377_consen 98 YYYLGYWIHG--CPKMNYKARFRPHEL 122 (128)
T ss_pred EEeeCeEeCC--CCcccchhcCCceee
Confidence 9998776554 334445666665443
No 102
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=96.04 E-value=0.29 Score=36.49 Aligned_cols=137 Identities=8% Similarity=-0.029 Sum_probs=88.9
Q ss_pred ceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEe-ECCeeEEEEEeeeCCCCCCcee
Q 047585 19 HISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAIC-VNNRPVGATSVRPNSGNDMCRA 97 (185)
Q Consensus 19 ~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iG~~~~~~~~~~~~~~~ 97 (185)
.++++. .+|++.+++++...... .. .+..+.+-.+..++.. .+....+++. .+|++||.+.+..... .
T Consensus 151 Gv~v~~--~~~l~~F~~l~~~t~~r--~g-~p~~~~~~f~~l~~~~-~~~~~l~~a~~~~g~~va~~l~~~~~~-----~ 219 (330)
T TIGR03019 151 GLTVTV--DGDLDRFYDVYAENMRD--LG-TPVFSRRYFRLLKDVF-GEDCEVLTVRLGDGVVASAVLSFYFRD-----E 219 (330)
T ss_pred CeEEEE--CCcHHHHHHHHHHHHhc--CC-CCCCCHHHHHHHHHhc-ccCEEEEEEEeCCCCEEEEEEEEEeCC-----E
Confidence 466665 35688888877642221 11 2334555555555543 2233344455 4888888766655432 1
Q ss_pred eeeEE--ECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECC
Q 047585 98 ELGYV--LASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKG 168 (185)
Q Consensus 98 ~~~~~--v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g 168 (185)
...++ ..++++..+-+..+.-.+++++.++ |++.+.+.....|....+|=++.||+.....-.+....|
T Consensus 220 ~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~--G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~~~~~~~~~ 290 (330)
T TIGR03019 220 VLPYYAGGLREARDVAANDLMYWELMRRACER--GLRVFDFGRSKRGTGPFKFKKNWGFEPQPLHYEYLLYEG 290 (330)
T ss_pred EEEEeccChHHHHhhChHHHHHHHHHHHHHHC--CCcEEEcCCCCCCCccHHHHhcCCCeeccceEEEEccCC
Confidence 22223 3588998899999999999999998 999999887655666777778899998877665554444
No 103
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=95.80 E-value=0.3 Score=32.13 Aligned_cols=107 Identities=15% Similarity=0.214 Sum_probs=61.6
Q ss_pred CceEeeeCCcc---CHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCC----ceEEEeE--CCeeEEEEEeee
Q 047585 18 SHISLRPLELS---DIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHP----WFRAICV--NNRPVGATSVRP 88 (185)
Q Consensus 18 ~~i~ir~~~~~---D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~iG~~~~~~ 88 (185)
..+....+..+ +++.++.++++..+..- +....-....+|++-.+.+.+ +..++.. ++++||++...+
T Consensus 22 ~gF~W~~~dl~d~~~l~ely~lL~~nYVEDd---d~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip 98 (162)
T PF01233_consen 22 DGFEWSTLDLNDDEELKELYELLNENYVEDD---DNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIP 98 (162)
T ss_dssp TTEEEEE--TTSHHHHHHHHHHHHHHSSBTT---TSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEE
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCccCC---cceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccce
Confidence 34666666654 44556666654332211 111112233445554444333 5666665 799999998877
Q ss_pred CCCCCC----ceeeee-EEECcccccccHHHHHHHHHHHHHhhh
Q 047585 89 NSGNDM----CRAELG-YVLASKYWGKGIATQAVKIVTKTIFDE 127 (185)
Q Consensus 89 ~~~~~~----~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~ 127 (185)
..-.-. ...++. +.|+++.|.++++..|+..+...+-..
T Consensus 99 ~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~ 142 (162)
T PF01233_consen 99 ATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQ 142 (162)
T ss_dssp EEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhc
Confidence 642111 114554 559999999999999999999988555
No 104
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=95.38 E-value=0.52 Score=32.08 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=76.5
Q ss_pred eeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeE-CCeeEEEEEeeeCCC----CCCc-
Q 047585 22 LRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICV-NNRPVGATSVRPNSG----NDMC- 95 (185)
Q Consensus 22 ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iG~~~~~~~~~----~~~~- 95 (185)
+||++++|++.+.+++++... .....+..+.+++.-|+... .+--+.+++.. +|++-.++++...+. ...+
T Consensus 31 lR~m~~~Dv~~v~~Ll~~yl~--~f~l~~~fs~eev~Hw~lp~-~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~ 107 (190)
T PF02799_consen 31 LRPMEEKDVPQVTKLLNKYLK--KFDLAPVFSEEEVKHWFLPR-KNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHK 107 (190)
T ss_dssp EEE--GGGHHHHHHHHHHHHT--TSSEEEE--HHHHHHHHS-B-TTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSS
T ss_pred cccCchhhHHHHHHHHHHHHH--hcccccccCHHHHHhhcccC-CCeEEEEEEecCCCceeeEEEEeecceeecCCCCcc
Confidence 899999999999998874221 11223455778877777541 11124555555 558888888877653 1111
Q ss_pred e---eeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeE-EEEEe
Q 047585 96 R---AELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKR-EGVLG 161 (185)
Q Consensus 96 ~---~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~-~~~~~ 161 (185)
. +..-+.+...-+ -++++.-++-.|++. |++-+-+--.-+|. .|.+.+.|.. .|...
T Consensus 108 ~l~aAY~fY~~~~~~~----l~~Lm~DaLi~Ak~~--gfDVFNaLd~mdN~---~fL~~lKFg~GdG~L~ 168 (190)
T PF02799_consen 108 TLKAAYSFYYVATSTR----LKELMNDALILAKNE--GFDVFNALDLMDNS---SFLEDLKFGPGDGNLN 168 (190)
T ss_dssp EEEEEEEEEEEESSSH----HHHHHHHHHHHHHHT--TESEEEEESTTTGG---GTTTTTT-EEEEEEEE
T ss_pred ceeeeeeeeeeecCCC----HHHHHHHHHHHHHHc--CCCEEehhhhccch---hhHhhCCccCCCCCeE
Confidence 1 333344544422 356777777777776 99988877777775 4789999985 44443
No 105
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=95.13 E-value=0.17 Score=34.27 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=33.4
Q ss_pred eeEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHHHHHHHhhh
Q 047585 79 RPVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDE 127 (185)
Q Consensus 79 ~~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~ 127 (185)
.++|+.+=...+..+ ..++ +.+.|.||++|+|+-|++..-+-++.+
T Consensus 66 h~vGyFSKEk~s~~~---~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e 112 (188)
T PF01853_consen 66 HIVGYFSKEKESWDN---NNLSCILTLPPYQRKGYGRFLIDFSYELSRRE 112 (188)
T ss_dssp EEEEEEEEESS-TT----EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEEEecccCC---eeEeehhhcchhhhcchhhhhhhhHHHHhhcc
Confidence 589988876655321 4565 557899999999999999887777655
No 106
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=94.79 E-value=0.35 Score=29.25 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=39.7
Q ss_pred CCeeEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHh
Q 047585 77 NNRPVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVA 144 (185)
Q Consensus 77 ~~~~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~ 144 (185)
++..=|++.+...+. ... +.++ +.|.++.||+|+|..++..+.+ +...+...+.++|+.
T Consensus 17 ~e~y~~~aivt~~~~-~~~-~yLdKfaV~~~~~g~gv~d~vf~~i~~-------d~~~L~Wrsr~~n~~ 76 (99)
T cd04265 17 SEGYNAAAIVTNEEV-DGV-PYLDKFAVSSSAQGEGTGEALWRRLRR-------DFPKLFWRSRSTNPI 76 (99)
T ss_pred eCCCcEEEEEeccCC-CCc-eEEEEEEEchhhhhcChHHHHHHHHHh-------hCCceEEEeCCCCcc
Confidence 555555555554431 122 5664 8899999999999888887754 334577788888764
No 107
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.43 E-value=0.73 Score=31.96 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeeeeEEEEeccC
Q 047585 111 GIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKDMVVFSLLST 181 (185)
Q Consensus 111 G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~~~~~~~ 181 (185)
|+|..++..+++.....++...++.+........-+++...+||....+ .....+|+++.+..-+....
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E--~lv~e~~~~YeIi~~~~~~~ 142 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDE--DLVEENGRFYEIIVAERGEE 142 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEE--EEEEETTEEEEEEEEEESSS
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEe--EEEeECCEEEEEEEEEeCCC
Confidence 8889999999998876654677899998888889999999999998875 34445788887776665443
No 108
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=94.38 E-value=0.27 Score=35.53 Aligned_cols=47 Identities=21% Similarity=0.165 Sum_probs=34.9
Q ss_pred CeeEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHHHHHHHhhh
Q 047585 78 NRPVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDE 127 (185)
Q Consensus 78 ~~~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~ 127 (185)
..+||+.+=...+..+ ..++ +.+.|-||++|+|+-|++..-+..+.+
T Consensus 140 ~h~vGYFSKEK~s~~~---nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~E 187 (290)
T PLN03238 140 SHIVGYFSKEKVSAED---YNLACILTLPPYQRKGYGKFLISFAYELSKRE 187 (290)
T ss_pred cEEEEEeceeccccCC---CcEEEEEecChhhhccHhHhHHHHHhHHhhcc
Confidence 4689988776665422 4455 557899999999999999887776554
No 109
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=1.1 Score=35.81 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=46.6
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
.+.-.-|+.+.+++-++.-++.. |+....+.|..+..+-.+||.++||...+..
T Consensus 826 ~~a~D~~~~k~m~~vll~tL~aN--GsrGaf~~V~~dD~~~~~fys~lG~~d~~~~ 879 (891)
T KOG3698|consen 826 MDASDAHPMKKMIQVLLVTLAAN--GSRGAFLTVAIDDIERQKFYSELGLTDLGLS 879 (891)
T ss_pred cccccchHHHHHHHHHHHHHHhc--CCcceeEEechhHHHHHHHHHHhchHHHhHh
Confidence 34445689999999999988887 9999999999999999999999999877654
No 110
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.13 Score=35.76 Aligned_cols=143 Identities=15% Similarity=0.067 Sum_probs=74.8
Q ss_pred CCCCccccccccCcee-cCceEeeeCCccCHHHHHHHcCC--ccceeccCCCCCCChHHHHHHHHHhc-CCCCceEEEeE
Q 047585 1 MESDSSESYMKNGFVE-LSHISLRPLELSDIDDFMVWVSD--PKVARFCPWESYTNKEDGINYIKTKV-PQHPWFRAICV 76 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~i~ir~~~~~D~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 76 (185)
|+.+.+-+.+.+..+. -....+||..+.-...+.++... ........+..+. .. ..+.. .+...++.+.+
T Consensus 1 mefafDl~~ifp~~I~rld~h~lrp~~p~~~~~v~eiId~LgklSAkaq~l~~pi--Ts----adKl~~sd~~vvy~~kd 74 (264)
T KOG4601|consen 1 MEFAFDLSTIFPDNIQRLDRHDLRPYGPKRYWAVAEIIDCLGKLSAKAQGLKRPI--TS----ADKLVDSDEEVVYYIKD 74 (264)
T ss_pred CcccccchhhcccceEEechhhcccCCcchhHHHHHHHHHHHHhhHHHhcccccc--ch----HHHhhcCcceEEEEEee
Confidence 5555555555555443 34455788775544444443321 0001122222111 11 22232 22334444444
Q ss_pred ---C--CeeEEEEEeee-----CCCCC-----CceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 77 ---N--NRPVGATSVRP-----NSGND-----MCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 77 ---~--~~~iG~~~~~~-----~~~~~-----~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
+ +.+.|++-+-. .+... ..-+.+.++|+++-|+.|.|+++++.+++ ++ +..--.+.++..
T Consensus 75 ~~a~~ks~l~GllKVG~KkLfl~D~~~~~ye~e~lcILDFyVheS~QR~G~G~~lfdyMl~---kE--~vephQ~a~DrP 149 (264)
T KOG4601|consen 75 EKANGKSILKGLLKVGYKKLFLTDNEQNQYEEEALCILDFYVHESEQRSGNGFKLFDYMLK---KE--NVEPHQCAFDRP 149 (264)
T ss_pred cccCcchheeeeehccceeEEEeccHhhhhccCCceEEEEEeehhhhhcCchHHHHHHHHH---hc--CCCchheeccCh
Confidence 2 45666654433 22211 11267789999999999999999998877 33 444445555555
Q ss_pred CHhhHHHHHH-cCC
Q 047585 142 NVASQRVLEK-AGF 154 (185)
Q Consensus 142 N~~a~~~y~~-~GF 154 (185)
....++|++| .|-
T Consensus 150 S~kLl~Fm~khYgl 163 (264)
T KOG4601|consen 150 SAKLLQFMEKHYGL 163 (264)
T ss_pred HHHHHHHHHHhcCc
Confidence 5567777765 444
No 111
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=93.77 E-value=0.3 Score=35.18 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=38.9
Q ss_pred eEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHH-------H-hcCCC-CceEEEeE--CCeeEEEEEeee
Q 047585 20 ISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIK-------T-KVPQH-PWFRAICV--NNRPVGATSVRP 88 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~-~~~~~~~~--~~~~iG~~~~~~ 88 (185)
+.+||++..|++.+.++......--. ..+.+.+....-+. . ..... .+++++++ .|+++|.+.+..
T Consensus 2 lvvRP~~~aDl~al~~LA~~sg~G~T---sLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a 78 (336)
T COG3138 2 LVVRPVERADLEALMELAVKTGVGLT---SLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEA 78 (336)
T ss_pred cccccccccCHHHHHHHHHhcCCCcc---cCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEE
Confidence 56899999999999998765332111 11223333322222 1 11122 25566666 799999988765
Q ss_pred C
Q 047585 89 N 89 (185)
Q Consensus 89 ~ 89 (185)
.
T Consensus 79 ~ 79 (336)
T COG3138 79 A 79 (336)
T ss_pred e
Confidence 3
No 112
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.75 E-value=0.053 Score=41.42 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=40.3
Q ss_pred EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEE-eccCCHh----hHHHHHHcCCeEEEE
Q 047585 101 YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAV-VDVENVA----SQRVLEKAGFKREGV 159 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~-~~~~N~~----a~~~y~~~GF~~~~~ 159 (185)
+.|+|+||+.|+|...+..+++|..+. -+..+.-. ....-++ =..|+++.||+..-.
T Consensus 247 vvvhpdyr~dglg~~sv~~a~ewI~eR--riPEmr~rkHlvetiaqmarynpffe~~gfkylwd 308 (593)
T COG2401 247 VVVHPDYRADGLGQLSVIAALEWIIER--RIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLWD 308 (593)
T ss_pred EEeccccccCccchhHHHHHHHHHHHh--hChhhhhhhhHHHHHHHHHhcCchhhhhceeeeee
Confidence 668999999999999999999999877 55554432 0011111 123889999987654
No 113
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=93.43 E-value=0.87 Score=33.99 Aligned_cols=133 Identities=15% Similarity=0.087 Sum_probs=79.2
Q ss_pred eEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeE-CCeeEEEEEeeeCCCC----CC
Q 047585 20 ISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICV-NNRPVGATSVRPNSGN----DM 94 (185)
Q Consensus 20 i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iG~~~~~~~~~~----~~ 94 (185)
--+|++++.|.+++.+++.+..- ++ ...+..+.++++.|+--.. +--+.++++. +|.+-+++++...+.. ..
T Consensus 261 ~G~R~me~kDvp~V~~Ll~~yl~-qf-~la~~f~~eev~Hwf~p~e-~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~ 337 (421)
T KOG2779|consen 261 PGLREMEEKDVPAVFRLLRNYLK-QF-ELAPVFDEEEVEHWFLPRE-NVVYSYVVESPNGKITDFCSFYSLPSTVMGNPK 337 (421)
T ss_pred CCcccccccchHHHHHHHHHHHH-he-ecccccCHHHhHhhccccc-ceEEEEEEECCCCcccceeeEEeccccccCCCC
Confidence 34799999999999999875321 21 2234456777777664321 1124455554 8899999999877651 11
Q ss_pred -ce---eeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEE
Q 047585 95 -CR---AELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYF 164 (185)
Q Consensus 95 -~~---~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~ 164 (185)
.+ +.+.+.+..+-+ -.+++.-++-.++.. |++-+.+.-.-+|. .|+++++|-.-.-..+++
T Consensus 338 ~ktl~aaYlyY~v~~~t~----~~~lvnDalilak~~--gfDVFNAld~meN~---~fl~~LkFg~GdG~l~YY 402 (421)
T KOG2779|consen 338 YKTLQAAYLYYNVATSTP----LLQLVNDALILAKQK--GFDVFNALDLMENE---SFLKDLKFGPGDGNLQYY 402 (421)
T ss_pred cceeeeeeEEEeccCCcc----HHHHHHHHHHHHHhc--CCceeehhhhhhhh---hHHHhcCcCcCCCceeEE
Confidence 11 233344554411 245555566666665 77766665555554 599999997643333333
No 114
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=93.33 E-value=2.4 Score=31.11 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCceEEEeECCeeEEEEEeeeCCCCCCce---eee-eEEECcccccccHHHHHHHHHHHHHhh--------hCCCccEEE
Q 047585 68 HPWFRAICVNNRPVGATSVRPNSGNDMCR---AEL-GYVLASKYWGKGIATQAVKIVTKTIFD--------EWPHLERLE 135 (185)
Q Consensus 68 ~~~~~~~~~~~~~iG~~~~~~~~~~~~~~---~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~--------~~~~~~~i~ 135 (185)
.....++++.+.||+.+.+.+........ ..+ |+.|..-|..-|+-..|++.++-..++ ...+--.+.
T Consensus 168 ~~NT~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll 247 (304)
T PF11124_consen 168 GKNTHIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLL 247 (304)
T ss_pred CCcceEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEE
Confidence 34567788899999999998876533221 223 577889999999998888887544433 110122466
Q ss_pred EEeccCCHhhHHHHHHcCCeEEE
Q 047585 136 AVVDVENVASQRVLEKAGFKREG 158 (185)
Q Consensus 136 ~~~~~~N~~a~~~y~~~GF~~~~ 158 (185)
+.+.+......+++++.||+...
T Consensus 248 ~d~YSFD~~~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 248 VDVYSFDKDMKKTLKKKGFKKIS 270 (304)
T ss_pred EEeeeccHHHHHHHHHCCCeeee
Confidence 77788899999999999999877
No 115
>PTZ00064 histone acetyltransferase; Provisional
Probab=92.72 E-value=0.42 Score=37.27 Aligned_cols=47 Identities=23% Similarity=0.112 Sum_probs=34.2
Q ss_pred CeeEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHHHHHHHhhh
Q 047585 78 NRPVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDE 127 (185)
Q Consensus 78 ~~~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~ 127 (185)
-.+||+.+=...+... ..++ +.+.|-||++|+|+-|++..-+..+..
T Consensus 369 ~HiVGYFSKEK~S~~~---nNLACILtLPpyQRKGYGklLIdfSYeLSrrE 416 (552)
T PTZ00064 369 CHIVGYFSKEKVSLLH---YNLACILTLPCYQRKGYGKLLVDLSYKLSLKE 416 (552)
T ss_pred cEEEEEecccccCccc---CceEEEEecchhhhcchhhhhhhhhhhhhhhc
Confidence 4788988766655422 4455 557899999999999998877766444
No 116
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=92.60 E-value=0.23 Score=37.59 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=32.5
Q ss_pred CceEEEeECCe---eEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHHHHHHHh
Q 047585 69 PWFRAICVNNR---PVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIF 125 (185)
Q Consensus 69 ~~~~~~~~~~~---~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~ 125 (185)
++.|.+..... .||+.+=...+..+ ..++ +.|.|-||++|+|+-|++..-+..+
T Consensus 233 pFlFYVlte~d~~G~VGYFSKEK~s~~~---yNlaCILtLPpyQRkGYGklLIdFSYeLSr 290 (396)
T KOG2747|consen 233 PFLFYVLTECDSYGCVGYFSKEKESSEN---YNLACILTLPPYQRKGYGKLLIDFSYELSR 290 (396)
T ss_pred ceEEEEEEecCCcceeeeeccccccccc---cceeeeeecChhhhcccchhhhhhhhhhhc
Confidence 45555555222 35544433333211 4554 5588999999999988887765543
No 117
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=92.58 E-value=0.31 Score=28.44 Aligned_cols=29 Identities=24% Similarity=0.108 Sum_probs=25.0
Q ss_pred CccEEEEEeccCCHhhHHHHHHcCCeEEE
Q 047585 130 HLERLEAVVDVENVASQRVLEKAGFKREG 158 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~~GF~~~~ 158 (185)
....++-.|...|..+++|.+++|+....
T Consensus 55 ~Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 55 QYPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred HhhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 35569999999999999999999998644
No 118
>PLN03239 histone acetyltransferase; Provisional
Probab=92.54 E-value=0.58 Score=34.90 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=33.6
Q ss_pred CeeEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHHHHHHHhhh
Q 047585 78 NRPVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDE 127 (185)
Q Consensus 78 ~~~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~ 127 (185)
-.+||+.+=...+..+ ..++ +.+.|-||++|+|+-|++..-+..+..
T Consensus 198 ~h~vGYFSKEK~s~~~---~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~E 245 (351)
T PLN03239 198 FHPVGYYSKEKYSDVG---YNLACILTFPAHQRKGYGRFLIAFSYELSKKE 245 (351)
T ss_pred eEEEEEeeecccCCCC---CceEEEEecChhhhcchhhhhHhhhhHhhhhc
Confidence 3688887766554322 3455 557899999999999998877766544
No 119
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.02 E-value=2.9 Score=28.90 Aligned_cols=92 Identities=15% Similarity=0.200 Sum_probs=62.0
Q ss_pred HhcCCCCceEEE-eECCeeEEEEEeeeCCCC------------------CCceeeee-EEECc--ccc---ccc-HHHHH
Q 047585 63 TKVPQHPWFRAI-CVNNRPVGATSVRPNSGN------------------DMCRAELG-YVLAS--KYW---GKG-IATQA 116 (185)
Q Consensus 63 ~~~~~~~~~~~~-~~~~~~iG~~~~~~~~~~------------------~~~~~~~~-~~v~~--~~r---g~G-~g~~l 116 (185)
++-+.++.+.++ ..+|+++|++.+-+.... ....+|.+ |+|+. .-+ +.. ++.++
T Consensus 46 qyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el 125 (209)
T COG3916 46 QYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYEL 125 (209)
T ss_pred ccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHH
Confidence 333344445544 349999999988775332 11225664 55553 222 222 47799
Q ss_pred HHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 117 VKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
+.-+++++.+. |++.|...+. ...-+.+++.||.....
T Consensus 126 ~~g~ie~a~~~--G~~~IvtVt~---~~meril~r~Gw~~~ri 163 (209)
T COG3916 126 FAGMIEYALAR--GITGIVTVTD---TGMERILRRAGWPLTRI 163 (209)
T ss_pred HHHHHHHHHHc--CCceEEEEEc---hHHHHHHHHcCCCeEEc
Confidence 99999999887 9999988774 45889999999987554
No 120
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=91.22 E-value=0.45 Score=36.80 Aligned_cols=47 Identities=21% Similarity=0.151 Sum_probs=33.8
Q ss_pred CeeEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHHHHHHHhhh
Q 047585 78 NRPVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDE 127 (185)
Q Consensus 78 ~~~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~ 127 (185)
-.+||+.+=...+... ..++ +.+.|-||++|+|+-|++..-+..+..
T Consensus 291 ~h~vGyFSKEk~s~~~---~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~e 338 (450)
T PLN00104 291 CHMVGYFSKEKHSEED---YNLACILTLPPYQRKGYGKFLIAFSYELSKRE 338 (450)
T ss_pred cEEEEEecccccCcCC---CceEEEEecchhhhcchhheehhheehhhhcc
Confidence 3789988776655432 3455 557899999999999988776655443
No 121
>PRK14852 hypothetical protein; Provisional
Probab=91.06 E-value=1.1 Score=38.35 Aligned_cols=140 Identities=10% Similarity=-0.002 Sum_probs=86.4
Q ss_pred CceEeeeCC-ccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcC-CCCceEEEeECCeeEEEEEeeeCCCCC--
Q 047585 18 SHISLRPLE-LSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVP-QHPWFRAICVNNRPVGATSVRPNSGND-- 93 (185)
Q Consensus 18 ~~i~ir~~~-~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iG~~~~~~~~~~~-- 93 (185)
.++.||.++ .+|...++.+..+..+..-+. .+.++ ...+..+-. +....|++-..+.++|...+...+...
T Consensus 27 dr~~~r~Aet~~e~~~~~~L~~~~Y~~~Gy~-~~~ps----~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl 101 (989)
T PRK14852 27 DRPAIKIAETPDEYTRAFRLVYEEYIRSGYL-KPHPS----RMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGL 101 (989)
T ss_pred cCcceeecCCHHHHHHHHHHHHHHHHHcCCC-CcCcc----cccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCc
Confidence 567788874 568888888877654433211 11111 111211111 223335554457777777777665421
Q ss_pred -----------------Cceeeee-EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHH-HcCC
Q 047585 94 -----------------MCRAELG-YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLE-KAGF 154 (185)
Q Consensus 94 -----------------~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~-~~GF 154 (185)
+..++++ +.++++.+.+-+--.+++.+..|+... +++.+.+.|. ++=..||+ -+||
T Consensus 102 ~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~--~~dd~~i~Vn---PkH~~FY~r~l~f 176 (989)
T PRK14852 102 PMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMS--EVDDILVTVN---PKHVKFYTDIFLF 176 (989)
T ss_pred CHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHc--CCCeEEEEEC---cchHHHHHHHhCC
Confidence 1124443 557788887777778888888888655 9999999985 45678999 5899
Q ss_pred eEEEEEeeEEEEC
Q 047585 155 KREGVLGKYFIMK 167 (185)
Q Consensus 155 ~~~~~~~~~~~~~ 167 (185)
+..|..+.+-.++
T Consensus 177 ~~ig~~r~~p~Vn 189 (989)
T PRK14852 177 KPFGEVRHYDTVD 189 (989)
T ss_pred ccccccccCCCCC
Confidence 9999876554443
No 122
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=90.69 E-value=5.1 Score=30.61 Aligned_cols=131 Identities=16% Similarity=0.144 Sum_probs=76.1
Q ss_pred ceEeeeC-----CccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCC
Q 047585 19 HISLRPL-----ELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGND 93 (185)
Q Consensus 19 ~i~ir~~-----~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~ 93 (185)
.|.++.+ ++++++.++.++.+.....+ ..+..+.+-.....+. +.++...+++..+|++||+..+...+.
T Consensus 199 Gi~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~--~~~yLt~~FF~~l~~~-m~~~~~l~~A~~~g~~Va~aL~l~~~~-- 273 (370)
T PF04339_consen 199 GIRIRTLTGDEITDEDWDRFYRLYQNTYAKRW--GRPYLTREFFEQLAET-MPEQVVLVVARRDGQPVAFALCLRGDD-- 273 (370)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhC--CChhhcHHHHHHHHHh-CcCCEEEEEEEECCeEEEEEEEEEeCC--
Confidence 4555554 45566777777765443332 1333444433333333 332333334444999999999888753
Q ss_pred CceeeeeEE--ECcccccccHHHH-HHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEEC
Q 047585 94 MCRAELGYV--LASKYWGKGIATQ-AVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMK 167 (185)
Q Consensus 94 ~~~~~~~~~--v~~~~rg~G~g~~-l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~ 167 (185)
...|-+ ...++ .++=-+ +.-..+++|-++ |++.+........+ ...||.++.+...+...+
T Consensus 274 ---~LyGRYwG~~~~~--~~LHFe~cYYq~Ie~aI~~--Gl~~f~~GaqGEHK------~~RGf~P~~t~S~H~~~~ 337 (370)
T PF04339_consen 274 ---TLYGRYWGCDEEI--PFLHFELCYYQGIEYAIEH--GLRRFEPGAQGEHK------IARGFEPVPTYSAHWIAD 337 (370)
T ss_pred ---EEEEeeecccccc--cCcchHHHHHHHHHHHHHc--CCCEEECCcchhHH------HHcCCccccceeeeeeCC
Confidence 223322 33333 344444 356889999888 99998877543322 367999999887666443
No 123
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=90.35 E-value=1.9 Score=32.29 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=45.7
Q ss_pred HHHHHHhcCCCC----ceEEEeE--CCeeEEEEEeeeCCCCC----Cceeeee-EEECcccccccHHHHHHHHHHHHHhh
Q 047585 58 INYIKTKVPQHP----WFRAICV--NNRPVGATSVRPNSGND----MCRAELG-YVLASKYWGKGIATQAVKIVTKTIFD 126 (185)
Q Consensus 58 ~~~~~~~~~~~~----~~~~~~~--~~~~iG~~~~~~~~~~~----~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~ 126 (185)
.+|+.-.+.+.+ ++.++.. ++++||+++..+..-.- -...++. ++|+.+.|+++++..|+..+...+--
T Consensus 119 ~eFl~Wal~~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl 198 (421)
T KOG2779|consen 119 PEFLKWALQPPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNL 198 (421)
T ss_pred HHHHHhhhcCCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhh
Confidence 345554444332 5555555 67999999877653211 1115554 56999999999999999998876633
No 124
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.99 E-value=3.7 Score=28.76 Aligned_cols=68 Identities=10% Similarity=0.128 Sum_probs=51.6
Q ss_pred ccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeeeeEEEEec
Q 047585 110 KGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKDMVVFSLL 179 (185)
Q Consensus 110 ~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~~~~~ 179 (185)
-|+|..++..+++...+.++++.++.+.....-..-+.+...++|+...+.- ..-+|+.+...+-+..
T Consensus 92 AGMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~i--leE~~kiYEIlv~e~~ 159 (226)
T COG2384 92 AGMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETI--LEEDGKIYEILVVEKS 159 (226)
T ss_pred eCCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeee--ecccCeEEEEEEEecC
Confidence 3889999999999998888788888888777667888899999999876432 2234666666665544
No 125
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=87.83 E-value=3.8 Score=30.13 Aligned_cols=112 Identities=11% Similarity=-0.016 Sum_probs=57.6
Q ss_pred ceEeeeC---CccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeE-CCeeEEEEEeeeCCCCCC
Q 047585 19 HISLRPL---ELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICV-NNRPVGATSVRPNSGNDM 94 (185)
Q Consensus 19 ~i~ir~~---~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iG~~~~~~~~~~~~ 94 (185)
.+.+.++ ++++.+.+.++..+..... ......-....+......+...+++.. +|+++|++.+.+.... .
T Consensus 132 ~~~~~~~~~~~~~~~~el~~i~~~W~~~~-----~~~e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~~~~-~ 205 (299)
T PF09924_consen 132 TFEVVPIPELDPELRDELLEISDEWLKEK-----ERPERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGSPLGGR-D 205 (299)
T ss_dssp T-EEEE-----GGGHHHHHHHHHHHHHHC-----THHHHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEEE-T-T
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHhcC-----chhHHHHHhccccchhhcCceEEEEEECCCcEEEEEEEEEccCC-c
Confidence 3667777 6777888877644211111 001112222333322223445666777 9999999999988731 1
Q ss_pred ceeeeeEEE-CcccccccHHHHHHHHHHHHHhhhCCCccEEEEEecc
Q 047585 95 CRAELGYVL-ASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDV 140 (185)
Q Consensus 95 ~~~~~~~~v-~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~ 140 (185)
. +.+.+.- +++ --+|+-..++..+++.+++. |+..+.+...+
T Consensus 206 ~-~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~--g~~~lnLg~ap 248 (299)
T PF09924_consen 206 G-WSIDFEKADPD-APKGIYEFLNVEFAEHLKAE--GVEYLNLGFAP 248 (299)
T ss_dssp E-EEEEEEEE-TT--STTHHHHHHHHHHHHS--T--T--EEE-----
T ss_pred c-EEEEEEecCCC-CCCcHHHHHHHHHHHhhhhC--CceEEEccccc
Confidence 1 3333222 233 34799999999999999877 88888755443
No 126
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=85.26 E-value=5.4 Score=24.04 Aligned_cols=49 Identities=14% Similarity=0.069 Sum_probs=30.9
Q ss_pred CceEEEeECCe-eEEEEEeeeCCCCC--------------------Cceeeee-EEECcccccccHHHHHH
Q 047585 69 PWFRAICVNNR-PVGATSVRPNSGND--------------------MCRAELG-YVLASKYWGKGIATQAV 117 (185)
Q Consensus 69 ~~~~~~~~~~~-~iG~~~~~~~~~~~--------------------~~~~~~~-~~v~~~~rg~G~g~~l~ 117 (185)
...+++..++. +||++.+...+... ...+++| ++|.|+||+......|.
T Consensus 30 ~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 30 SVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred ccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 34455555444 99999887765422 1124554 66899999887766553
No 127
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=84.12 E-value=3.4 Score=31.21 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=37.0
Q ss_pred eEEEEEeeeCCCCC-Cceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 80 PVGATSVRPNSGND-MCRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 80 ~iG~~~~~~~~~~~-~~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
++|+..+....... +..+.+ .+.|.|.|||+|+|..+++.+....... |.+- .++|...
T Consensus 200 ~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~-p~v~--DiTVEdP 260 (403)
T KOG2696|consen 200 YVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEE-PTVL--DITVEDP 260 (403)
T ss_pred eeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccC-Ccee--EEEecCc
Confidence 46666665554321 122334 3678999999999999999999666444 3443 4444433
No 128
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=83.55 E-value=3.7 Score=25.12 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=16.6
Q ss_pred HhhHHHHHHcCCeEEEEEeeE
Q 047585 143 VASQRVLEKAGFKREGVLGKY 163 (185)
Q Consensus 143 ~~a~~~y~~~GF~~~~~~~~~ 163 (185)
.+|++||+.+||+........
T Consensus 13 ~~s~~FY~~LGf~~~~~~~~~ 33 (113)
T cd08356 13 AESKQFYQALGFELEWENDNL 33 (113)
T ss_pred HHHHHHHHHhCCeeEecCCCE
Confidence 489999999999987754433
No 129
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=81.92 E-value=13 Score=25.01 Aligned_cols=111 Identities=16% Similarity=0.219 Sum_probs=58.9
Q ss_pred eCCcc-CHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeee--CCCCCCceeee-
Q 047585 24 PLELS-DIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRP--NSGNDMCRAEL- 99 (185)
Q Consensus 24 ~~~~~-D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~--~~~~~~~~~~~- 99 (185)
.++.- |.+.+.+++.+.. ....+.+ .|+..... .... ++. +|..-|.+.+.+ ....... +.+
T Consensus 27 s~~~~~d~~kL~~ll~~sf-------~~~~~v~---~yl~~l~~-~~~~-iy~-d~~y~~~AIVt~e~~~~~~~v-~yLd 92 (170)
T PF04768_consen 27 SLSEFVDLDKLRALLERSF-------GGKLDVD---HYLDRLNN-RLFK-IYV-DEDYEGAAIVTPEGPDSNGPV-PYLD 92 (170)
T ss_dssp SCCCSS-HHHHHHHHHHHS-------TSSSBHT---THHHHHHT-S-SE-EEE-ETTSSEEEEEEEE-SCTCTSE-EEEE
T ss_pred CccccCCHHHHHHHHHhcc-------cccccHH---HHHHHhhc-cceE-EEE-eCCceEEEEEEecCCCCCCCC-eEEE
Confidence 34444 7888888776433 1122333 34444422 2222 222 455555555544 3322222 555
Q ss_pred eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHH-H-HcCCeE
Q 047585 100 GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVL-E-KAGFKR 156 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y-~-~~GF~~ 156 (185)
-+.|.+..||.|++-.+...+.+ . ...+...+.++|+ ..++| + .-|+-.
T Consensus 93 KFav~~~~~g~gv~D~vf~~i~~----d---~p~L~Wrsr~~n~-~~~Wyf~rs~G~~~ 143 (170)
T PF04768_consen 93 KFAVSKSAQGSGVADNVFNAIRK----D---FPKLFWRSREDNP-NNKWYFERSDGSFK 143 (170)
T ss_dssp EEEE-HHHHHTTHHHHHHHHHHH----H----SSEEEEEETT-T-THHHHHHH-SEEEE
T ss_pred EEEecchhhhcCHHHHHHHHHHH----h---ccceEEEecCCCC-cccEEEEeeEEEEE
Confidence 48899999999999888887743 3 3347777787775 45555 3 445544
No 130
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=81.76 E-value=9 Score=23.61 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=26.4
Q ss_pred ECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHH---HcCCeEEEE
Q 047585 103 LASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLE---KAGFKREGV 159 (185)
Q Consensus 103 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~---~~GF~~~~~ 159 (185)
+.+...++| .|+.+-.++++|.+.+ ++..+.+.+..+......+.+ -.||+...-
T Consensus 30 ip~~~~~~~-~K~~lvaLLElAee~L-~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~ 87 (108)
T PF02100_consen 30 IPSSALGQG-SKESLVALLELAEEKL-GCSHVVICLDKNRPDRASLLRTLMWVGFELVTP 87 (108)
T ss_dssp -SS---SS---SHHHHHHHHHHHHHH-----EEEEE---SS-HHHHHHHHTTT--EEE--
T ss_pred ECCcccccc-cHHHHHHHHHHhcCcC-CCCEEEEEEECCchhHHHhhhhcEeeccEecCC
Confidence 344444444 6788888889998788 999999998877765444444 467776653
No 131
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=77.33 E-value=1.9 Score=32.21 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=25.8
Q ss_pred eeEEEEEeeeCCCCCCceeeee-EEECcccccccHHHHHHHH
Q 047585 79 RPVGATSVRPNSGNDMCRAELG-YVLASKYWGKGIATQAVKI 119 (185)
Q Consensus 79 ~~iG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~l~~~ 119 (185)
.+||+.+=...+..+ ..++ +.+.|-||++|+|+-|++.
T Consensus 248 h~vGyFSKEK~S~~~---yNLaCILtLP~yQRrGYG~lLIdF 286 (395)
T COG5027 248 HLVGYFSKEKESEQD---YNLACILTLPPYQRRGYGKLLIDF 286 (395)
T ss_pred eeeeeechhhccccc---CceEEEEecChhHhcccceEeeee
Confidence 477877655544322 4454 4578999999999876654
No 132
>PHA02769 hypothetical protein; Provisional
Probab=76.31 E-value=3.6 Score=25.40 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=24.9
Q ss_pred HHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 120 VTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 120 ~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
+.+.++.. |+.-++..-.++ .|.++|.|.||+.+|...
T Consensus 104 l~~k~~~d--g~evlwtlgfpd--hsnaly~kagfk~vg~ts 141 (154)
T PHA02769 104 LAEKLKKD--GFEVLWTLGFPD--HSNALYKKAGFKLVGQTS 141 (154)
T ss_pred HHHHHhcC--CeEEEEEecCCC--cchhHHhhhhhhHhcccc
Confidence 33444444 666555544454 478899999999988543
No 133
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=75.69 E-value=8.1 Score=25.96 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=37.1
Q ss_pred eeeeEE-ECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcC
Q 047585 97 AELGYV-LASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAG 153 (185)
Q Consensus 97 ~~~~~~-v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~G 153 (185)
+++|++ |.|+.+|.||+..+ ..+.-.+ +.+ ++.--..+|. .+..+.+++++
T Consensus 86 aElGLygVRpDLEGlGi~hs~-r~m~PvL-q~L-gVPF~FGtVR---~al~~Hv~R~~ 137 (196)
T PF02474_consen 86 AELGLYGVRPDLEGLGISHSM-RVMYPVL-QEL-GVPFGFGTVR---HALRNHVERLC 137 (196)
T ss_pred EEEEEEEeeccccccccchhh-hhhhhHH-Hhc-CCCeecccch---HHHHHHHHHHh
Confidence 778854 89999999999876 3444444 555 8887777775 45777777766
No 134
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=75.15 E-value=9.2 Score=29.64 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=49.3
Q ss_pred eEEEeEC-CeeEEEEEeeeCCCCCCceeeeeEEE-Cc--ccccccHHHHHHHHHHHHHhhhCCCccEEEEEe--------
Q 047585 71 FRAICVN-NRPVGATSVRPNSGNDMCRAELGYVL-AS--KYWGKGIATQAVKIVTKTIFDEWPHLERLEAVV-------- 138 (185)
Q Consensus 71 ~~~~~~~-~~~iG~~~~~~~~~~~~~~~~~~~~v-~~--~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~-------- 138 (185)
.+++..+ +.++|.+.+........ ..+.+.- .| +|...-+-..+++.+.++++++ ++-.|.+..
T Consensus 37 ~vgv~~d~~~v~aa~ll~~~~~~~g--~~~~yiprGPv~d~~d~ell~~f~~~Lk~~akk~--~a~~lridP~~~~~~~~ 112 (406)
T PF02388_consen 37 RVGVKDDGGEVAAAALLLRKKPFKG--FKYAYIPRGPVMDYSDEELLEFFLEELKKYAKKK--RALFLRIDPNVIYQERD 112 (406)
T ss_dssp EEEEE-TTS-EEEEEEEEEEECTTT--CEEEEETT--EC-TT-HHHHHHHHHHHHHHHCTT--TEEEEEE--S-EEECE-
T ss_pred EEEEEeCCCeEEEEEEEEEeccCCc--eeEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC--CEEEEEEeCchhhhhcc
Confidence 3444444 67777665555443211 2222221 36 8888889999999999999886 555554433
Q ss_pred -------ccCCHhhHHHHHHcCCeEEEEEe
Q 047585 139 -------DVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 139 -------~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
...|...+..++++||+..+...
T Consensus 113 ~~g~~~~~~~~~~~~~~l~~~G~~~~g~~~ 142 (406)
T PF02388_consen 113 EDGEPIEGEENDELIENLKALGFRHQGFTK 142 (406)
T ss_dssp TTS-EEEE-S-THHHHHHHHTT-CCTS-SS
T ss_pred cccccccCcchHHHHHHHHhcCceecCccc
Confidence 23466788999999999877543
No 135
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=73.74 E-value=12 Score=22.92 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=15.7
Q ss_pred HhhHHHHHHcCCeEEEEEe
Q 047585 143 VASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 143 ~~a~~~y~~~GF~~~~~~~ 161 (185)
.+|++||+++||+......
T Consensus 14 ~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 14 DATEAFYARLGFSVGYRQA 32 (120)
T ss_pred HHHHHHHHHcCCEEEecCC
Confidence 5899999999999876554
No 136
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=71.55 E-value=7 Score=24.14 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=14.4
Q ss_pred CHhhHHHHHHcCCeEEE
Q 047585 142 NVASQRVLEKAGFKREG 158 (185)
Q Consensus 142 N~~a~~~y~~~GF~~~~ 158 (185)
=.+|++||+.+||+...
T Consensus 11 l~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 11 LEKSTAFYTALGFEFNP 27 (124)
T ss_pred HHHHHHHHHHCCCEEcc
Confidence 35899999999998764
No 137
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=70.31 E-value=28 Score=23.56 Aligned_cols=75 Identities=8% Similarity=0.033 Sum_probs=51.3
Q ss_pred EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhh---HHHHHHcCCeEEEEEeeEEEECCeeeeeEEEE
Q 047585 101 YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVAS---QRVLEKAGFKREGVLGKYFIMKGSTKDMVVFS 177 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a---~~~y~~~GF~~~~~~~~~~~~~g~~~d~~~~~ 177 (185)
++.-|+-.=-+..|+-+-.++++|.+++ .+.++.+...++|..- .+-+.-.||++.... ....-...|+..|+
T Consensus 105 ~~~IPdq~l~~gsKe~lvalLEfAEekl-~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~---HP~~pp~~~~ffM~ 180 (191)
T KOG4387|consen 105 FFEIPDQALDVGSKEGLVALLEFAEEKL-HVDKVFICFDKNREDRAALLRTFSYVGFEPVRPD---HPVVPPRPDVFFMV 180 (191)
T ss_pred EEecCcchhcccchHhHHHHHHHHHHhh-ccceEEEEEecCccChHhhhhhehcceeeecCCC---CCCCCCccceEEEE
Confidence 3445777777888999999999999998 9999999888777633 344455788776643 11223334566665
Q ss_pred ec
Q 047585 178 LL 179 (185)
Q Consensus 178 ~~ 179 (185)
+.
T Consensus 181 Y~ 182 (191)
T KOG4387|consen 181 YP 182 (191)
T ss_pred Ee
Confidence 44
No 138
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=68.45 E-value=23 Score=21.45 Aligned_cols=36 Identities=11% Similarity=-0.028 Sum_probs=24.1
Q ss_pred CccEEEEEeccCCHhhHHHHHH-cCCeEEEEEeeEEEE
Q 047585 130 HLERLEAVVDVENVASQRVLEK-AGFKREGVLGKYFIM 166 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~~~~~~~~ 166 (185)
++..+.+.+.. =.++++||++ +||+.........++
T Consensus 3 ~i~hv~l~v~d-~~~s~~FY~~~lG~~~~~~~~~~~~~ 39 (120)
T cd08362 3 ALRGVGLGVPD-LAAAAAFYREVWGLSVVAEDDGIVYL 39 (120)
T ss_pred eeeEEEEecCC-HHHHHHHHHhCcCcEEEEecCCEEEE
Confidence 45556665543 3589999997 999987655444443
No 139
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=68.19 E-value=8.1 Score=23.66 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=16.8
Q ss_pred EEEEeccCCHhhHHHHHHcCCeEEE
Q 047585 134 LEAVVDVENVASQRVLEKAGFKREG 158 (185)
Q Consensus 134 i~~~~~~~N~~a~~~y~~~GF~~~~ 158 (185)
+.+.| .+=.+|++||+++||+...
T Consensus 4 i~l~V-~D~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 4 VGIVV-ADMAKSLDFYRRLGFDFPE 27 (122)
T ss_pred EEEEe-ccHHHHHHHHHHhCceecC
Confidence 44444 3335899999999998643
No 140
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=67.76 E-value=15 Score=21.81 Aligned_cols=44 Identities=7% Similarity=0.168 Sum_probs=27.2
Q ss_pred cceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEE
Q 047585 41 KVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGAT 84 (185)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~ 84 (185)
....+.....++..+..+.|.++...+.-++=++..+|++||-.
T Consensus 38 f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~EG 81 (93)
T PF07315_consen 38 FEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAEG 81 (93)
T ss_dssp EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEES
T ss_pred eEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEecC
Confidence 33444444444444677788888888766777777799999854
No 141
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=67.24 E-value=59 Score=25.48 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=55.0
Q ss_pred ceEEEeECCeeEEEEEeeeCCCCCCceeeeeEEE-Cc--ccccccHHHHHHHHHHHHHhhhCCCccEEEEEe--------
Q 047585 70 WFRAICVNNRPVGATSVRPNSGNDMCRAELGYVL-AS--KYWGKGIATQAVKIVTKTIFDEWPHLERLEAVV-------- 138 (185)
Q Consensus 70 ~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~v-~~--~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~-------- 138 (185)
..+.|..+++.|+.+++........ ....+.- .| +|-++..-.-++..+..+++++ .+-.+.+..
T Consensus 41 ~~~~v~~~~~~v~aa~ll~k~~~~~--~~~~~~prGPv~dy~~~~l~~~~~k~l~~y~k~~--~~l~i~idP~l~~~~~~ 116 (418)
T COG2348 41 HLIGVKKDGNAVIAASLLSKKLPLG--FYTYYIPRGPVMDYSNQELLDYFIKELKKYAKSK--RALFIKIDPYLVYQQFD 116 (418)
T ss_pred eeEEEEecCceeeeeeeeeeeccCC--ceEEEecCCCcccccchHHHHHHHHHHHHHHhhc--cceEEEeccchhhhccc
Confidence 3455555666655444443332221 2333333 45 8888888888888888888765 333333221
Q ss_pred -------ccCCHhhHHHHHHcCCeEEEEEe
Q 047585 139 -------DVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 139 -------~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
...|...++.+..+|++..|...
T Consensus 117 ~~~~~~~~~~n~~~i~~l~~lG~k~~g~t~ 146 (418)
T COG2348 117 LGGEIIENYNNLAIIKLLKDLGYKHSGFTK 146 (418)
T ss_pred CCCccccCcchHHHHHHHHHhhhhhcCccc
Confidence 14578999999999999988654
No 142
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=65.61 E-value=12 Score=27.46 Aligned_cols=63 Identities=5% Similarity=-0.045 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceee-eeEEECcccccccHHHHH
Q 047585 53 NKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAE-LGYVLASKYWGKGIATQA 116 (185)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~-~~~~v~~~~rg~G~g~~l 116 (185)
..+...+++..... --+..++..+|+|+++-.+...+...+...+ +...++|++..--.|+-+
T Consensus 188 ~~~~l~e~f~~Lr~-l~fG~VLfl~~~PcA~qlv~k~eSp~wi~~D~iNgG~Dpe~~~~spGSIL 251 (298)
T PRK15312 188 PADNLANFFSQLRH-LLFGHILYIEGIPCAFDIVLKSESQMNVYFDVPNGAVKNECMPLSPGSIL 251 (298)
T ss_pred cHHHHHHHHHHhHH-hheeeEEEECCcceEEEEEEEecCCCcEEEecccCccCcccccCCCccEE
Confidence 46666666665433 3455566679999999999888765442211 123378888766665533
No 143
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=65.61 E-value=20 Score=22.90 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=39.9
Q ss_pred ccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEeeEEEECCeeeee
Q 047585 106 KYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLGKYFIMKGSTKDM 173 (185)
Q Consensus 106 ~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~~~~~~~g~~~d~ 173 (185)
|=||-|+|+.+++.+.+ .+|. .+.+...-+|.-|-.-+.|.|-..-.+=.+...++-+..|.
T Consensus 6 DGQGGGiG~~iv~~lr~----~~~~--~~eI~AlGTNa~AT~~MlKaGA~~gATGENaIv~n~~~aDi 67 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRK----ELPE--EVEIIALGTNAIATSAMLKAGANEGATGENAIVVNARKADI 67 (131)
T ss_pred eCCCChhHHHHHHHHHH----hCCC--CcEEEEEehhHHHHHHHHHcCCCCcccccchheeccCCCCE
Confidence 44889999888887755 3322 25555666788888899999987655444444334333343
No 144
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.13 E-value=34 Score=24.00 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.7
Q ss_pred CccEEEE---EeccCCHhhHHHHHHcCCeEEEEE
Q 047585 130 HLERLEA---VVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 130 ~~~~i~~---~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
+++++.+ ++.+-|.+.+.|+++.||......
T Consensus 117 ~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~ 150 (238)
T COG3473 117 GAQRISVLTPYIDEVNQREIEFLEANGFEIVDFK 150 (238)
T ss_pred CcceEEEeccchhhhhhHHHHHHHhCCeEEEEee
Confidence 7777665 446789999999999999987653
No 145
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=63.43 E-value=9.7 Score=24.14 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=20.5
Q ss_pred CccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 130 HLERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
+++.+.+.|. +=.+|++||+++||+....
T Consensus 3 ~i~Hi~i~v~-Dl~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 3 RMDNVGIVVR-DLEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeeEEEEeC-CHHHHHHHHHHcCCEEccc
Confidence 4555666555 3468999999999987543
No 146
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=61.67 E-value=18 Score=26.29 Aligned_cols=63 Identities=8% Similarity=-0.005 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceee-eeEEECcccccccHHHHH
Q 047585 53 NKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAE-LGYVLASKYWGKGIATQA 116 (185)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~-~~~~v~~~~rg~G~g~~l 116 (185)
..+...+++..... --+..++..+|+||++-.+...+...+...+ +.-.++|+++.--.|+-+
T Consensus 158 ~~~~l~e~f~~Lr~-~~fG~vL~l~~~P~Aiqlv~k~es~~wv~~D~iNgG~Dp~~~~~SpGSiL 221 (264)
T PF07395_consen 158 GKEHLAEFFSELRH-MIFGSVLFLNGQPCAIQLVYKVESPKWVYFDYINGGYDPECRDFSPGSIL 221 (264)
T ss_pred cHHHHHHHHHHhHH-hheeeEEEECCcceEEEEEEEecCCCeEEEecccCccCcccccCCCccEE
Confidence 44556666654422 3345566669999999999888765442211 123368888876666644
No 147
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=61.33 E-value=12 Score=26.05 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEE
Q 047585 110 KGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREG 158 (185)
Q Consensus 110 ~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~ 158 (185)
+|+|++-++.++-||++. . ...+ ..=+++++.++|+....
T Consensus 121 KGIG~ETaDsILlYa~~r--p----~FVv---D~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALDR--P----VFVV---DKYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhcC--c----ccch---hHHHHHHHHHhcccccc
Confidence 899999999999999876 2 1223 34489999999997764
No 148
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=61.10 E-value=61 Score=26.34 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=43.7
Q ss_pred CCeeEEEEEeeeCCCCCCceeeeeEEE---CcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 77 NNRPVGATSVRPNSGNDMCRAELGYVL---ASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 77 ~~~~iG~~~~~~~~~~~~~~~~~~~~v---~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
+|+++|++.+.+.... .++++-+ +|+. -+|+.--|+..++.+++++ |++++.+...+-
T Consensus 401 ~g~VvaFa~l~~~~~~----~~~SlDlMR~sp~a-p~g~mdfLf~~li~~aKe~--G~~~fsLgmApl 461 (538)
T COG2898 401 EGEVVAFANLMPTGGK----EGYSLDLMRRSPDA-PNGTMDFLFSELILWAKEE--GYQRFSLGMAPL 461 (538)
T ss_pred CCCeEEEEeecccCCc----ceeEEEeeecCCCC-CchHHHHHHHHHHHHHHHc--CCeEEecCCccc
Confidence 7889999999987653 2333222 3332 3799999999999999998 999998876543
No 149
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=59.72 E-value=8.5 Score=24.37 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=17.2
Q ss_pred CHhhHHHHHHcCCeEEEEEeeE
Q 047585 142 NVASQRVLEKAGFKREGVLGKY 163 (185)
Q Consensus 142 N~~a~~~y~~~GF~~~~~~~~~ 163 (185)
=.+|.+||.++||+....+.+.
T Consensus 14 L~~S~~Fy~alGfk~Npq~sde 35 (133)
T COG3607 14 LEASKAFYTALGFKFNPQFSDE 35 (133)
T ss_pred HHHHHHHHHHhCcccCCCcccc
Confidence 3589999999999987665543
No 150
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=58.66 E-value=30 Score=23.23 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=26.5
Q ss_pred ECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 103 LASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 103 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
..+++|.-|+|.+++..+ |++++.+-.. |+..+.-.+..|-+..+..
T Consensus 121 ~~~d~R~ygigaqIL~dL---------GV~~~rLLtn--np~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 121 FPEDLRDYGIGAQILRDL---------GVKKMRLLTN--NPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp --S----THHHHHHHHHT---------T--SEEEE-S---HHHHHHHHHTT--EEEEE
T ss_pred CccccccHHHHHHHHHHc---------CCCEEEECCC--ChhHHHHHhcCCCEEEEEe
Confidence 357888899996655443 9999987653 7888888899998887764
No 151
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=57.98 E-value=30 Score=20.87 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=19.7
Q ss_pred ccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 131 LERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
+..+.+.|.. =.+|.+||+.+||+.....
T Consensus 4 l~hv~l~v~D-l~~s~~FY~~lGl~~~~~~ 32 (113)
T cd07267 4 IAHVRFEHPD-LDKAERFLTDFGLEVAART 32 (113)
T ss_pred EEEEEEccCC-HHHHHHHHHHcCCEEEEec
Confidence 3445555443 3589999999999876543
No 152
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=57.89 E-value=1e+02 Score=26.84 Aligned_cols=77 Identities=12% Similarity=0.191 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccE
Q 047585 54 KEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLER 133 (185)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~ 133 (185)
.++....+......+....++..+|+++|++.+...-..+ ..+.++.+++. |++
T Consensus 688 ~~~i~~~~~~~e~~g~tvv~v~vn~~l~gv~~l~D~vr~~-----------------------a~~av~~Lk~~--Gi~- 741 (951)
T KOG0207|consen 688 PDDILDALTESERKGQTVVYVAVNGQLVGVFALEDQVRPD-----------------------AALAVAELKSM--GIK- 741 (951)
T ss_pred chhHHHhhhhHhhcCceEEEEEECCEEEEEEEeccccchh-----------------------HHHHHHHHHhc--Cce-
Confidence 4445555555555555666666699999999987654321 13444445444 755
Q ss_pred EEEEeccCCHhhHHHHHHcCCeE
Q 047585 134 LEAVVDVENVASQRVLEKAGFKR 156 (185)
Q Consensus 134 i~~~~~~~N~~a~~~y~~~GF~~ 156 (185)
+.+-+..++..|++..+..|+..
T Consensus 742 v~mLTGDn~~aA~svA~~VGi~~ 764 (951)
T KOG0207|consen 742 VVMLTGDNDAAARSVAQQVGIDN 764 (951)
T ss_pred EEEEcCCCHHHHHHHHHhhCcce
Confidence 44546666677888888888543
No 153
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=56.04 E-value=31 Score=25.77 Aligned_cols=138 Identities=15% Similarity=0.006 Sum_probs=68.4
Q ss_pred CceEeeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcC--CCCce--EEEeE-CCeeEEEEEeeeCCCC
Q 047585 18 SHISLRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVP--QHPWF--RAICV-NNRPVGATSVRPNSGN 92 (185)
Q Consensus 18 ~~i~ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~-~~~~iG~~~~~~~~~~ 92 (185)
+.--+|++...|.+++.+++..... ++. .....+.++...++....+ +.+.. +++.. +|.+-++.++...+..
T Consensus 257 kt~GlR~~e~kD~~~v~~L~~~y~~-Rfe-l~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t 334 (451)
T COG5092 257 KTEGLRLAEEKDMEDVARLYLEYSR-RFE-LYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFT 334 (451)
T ss_pred CCcccchhhhhCHHHHHHHHHHHHH-HHH-HHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccce
Confidence 3345799999999999998764211 110 1112244555544433222 23322 33333 8888888888766521
Q ss_pred ----CC-ce---eeeeEEECcccccccHHH-----------HHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcC
Q 047585 93 ----DM-CR---AELGYVLASKYWGKGIAT-----------QAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAG 153 (185)
Q Consensus 93 ----~~-~~---~~~~~~v~~~~rg~G~g~-----------~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~G 153 (185)
.. .. +.+.++ ..+-+=+.+.. +++.-+.-.++.. ++.-+-+.+.-+|. -|...++
T Consensus 335 ~i~n~kykdiq~gYLYYy-a~d~~~kd~~~~a~~a~~~r~~e~v~Da~ilak~~--~~DVFNalt~~dN~---lFL~dLk 408 (451)
T COG5092 335 TIENKKYKDIQGGYLYYY-AGDDQFKDFDPKATKALKTRVAEMVGDAMILAKVE--GCDVFNALTMMDNS---LFLADLK 408 (451)
T ss_pred eecCccccccceeEEEEE-ccCccccccChHHHHHHHHHHHHHHHHHHHHHHHc--CCchhhhhhhccch---hHHHhcC
Confidence 11 10 222222 21112222222 2233333334333 67666665666664 3888999
Q ss_pred CeEEEEEeeE
Q 047585 154 FKREGVLGKY 163 (185)
Q Consensus 154 F~~~~~~~~~ 163 (185)
|-.-.-+-++
T Consensus 409 Fg~GdGflny 418 (451)
T COG5092 409 FGCGDGFLNY 418 (451)
T ss_pred ccCCCceeEE
Confidence 9764333333
No 154
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=54.44 E-value=55 Score=22.31 Aligned_cols=75 Identities=13% Similarity=0.199 Sum_probs=53.0
Q ss_pred CCeeEEEEEeeeCCCCCCc-------------------------eeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCc
Q 047585 77 NNRPVGATSVRPNSGNDMC-------------------------RAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHL 131 (185)
Q Consensus 77 ~~~~iG~~~~~~~~~~~~~-------------------------~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~ 131 (185)
+|++++.+++..-....-. ..|+|-. .-.+.|.++.++..+..++... |+
T Consensus 43 ~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnL---As~~~g~~~~l~~~l~~~L~~~--g~ 117 (179)
T PF12261_consen 43 DGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNL---ASFSPGAARLLFAALAQLLAQQ--GF 117 (179)
T ss_pred CCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeech---hhcCcccHHHHHHHHHHHHHHC--CC
Confidence 8899999999887632100 0222211 1235889999999999999777 88
Q ss_pred cEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 132 ERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 132 ~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
+.+..+. ..+-++++.|+|..+...
T Consensus 118 ~w~vfTa---T~~lr~~~~rlgl~~~~L 142 (179)
T PF12261_consen 118 EWVVFTA---TRQLRNLFRRLGLPPTVL 142 (179)
T ss_pred CEEEEeC---CHHHHHHHHHcCCCceec
Confidence 8765544 677999999999987553
No 155
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=53.99 E-value=26 Score=22.28 Aligned_cols=20 Identities=10% Similarity=-0.009 Sum_probs=15.3
Q ss_pred CCHhhHHHHH-HcCCeEEEEE
Q 047585 141 ENVASQRVLE-KAGFKREGVL 160 (185)
Q Consensus 141 ~N~~a~~~y~-~~GF~~~~~~ 160 (185)
+-.+|++||+ .+||+...+.
T Consensus 12 DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 12 NRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred CHHHHHHHHHHhcCCEEEeee
Confidence 3469999995 5999976644
No 156
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=52.01 E-value=33 Score=21.65 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=19.9
Q ss_pred EEEEEeccCCHhhHHHHHH-cCCeEEEEEe
Q 047585 133 RLEAVVDVENVASQRVLEK-AGFKREGVLG 161 (185)
Q Consensus 133 ~i~~~~~~~N~~a~~~y~~-~GF~~~~~~~ 161 (185)
.+.+.| .+=.+|++||++ +||+......
T Consensus 3 Hi~i~V-~D~e~s~~FY~~vLGf~~~~~~~ 31 (136)
T cd08342 3 HVEFYV-GNAKQLASWFSTKLGFEPVAYHG 31 (136)
T ss_pred EEEEEe-CCHHHHHHHHHHhcCCeEEEecC
Confidence 345555 334689999999 9999877543
No 157
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=50.64 E-value=30 Score=20.83 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=19.6
Q ss_pred ccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 131 LERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
+..+.+.|.. =.+|.+||+.+||+....
T Consensus 3 i~hv~l~v~d-~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 3 IDHFALEVPD-LEVARRFYEAFGLDVREE 30 (112)
T ss_pred eeEEEEecCC-HHHHHHHHHHhCCcEEee
Confidence 4455555542 358999999999998654
No 158
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=50.40 E-value=53 Score=22.68 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=36.3
Q ss_pred EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 101 YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
+...+++|.-|+|.+++..+ |++++.+-+. |+.-+.-.+..|-....+..
T Consensus 120 lg~~~D~R~ygigAqIL~dL---------GI~~irLLtn--np~K~~~l~~~Gi~vverv~ 169 (193)
T COG0807 120 LGFPADERDYGIGAQILKDL---------GIKKIRLLTN--NPRKIYGLEGFGINVVERVP 169 (193)
T ss_pred hcCCchHHHHHHHHHHHHHc---------CCcEEEEecC--ChHHHHHHHhCCceEEEEee
Confidence 44568889999996655443 9999998665 77677777888866666543
No 159
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=49.60 E-value=62 Score=20.08 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=40.3
Q ss_pred CCeeEEEEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeE
Q 047585 77 NNRPVGATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKR 156 (185)
Q Consensus 77 ~~~~iG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~ 156 (185)
.+++-|.-.+......... .++.+.+.|. .....+++.+.+. |++.+.+.....+..+.+..++.|.+.
T Consensus 37 ~~~i~G~~~y~sl~e~p~~-iDlavv~~~~--------~~~~~~v~~~~~~--g~~~v~~~~g~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 37 GGEILGIKCYPSLAEIPEP-IDLAVVCVPP--------DKVPEIVDEAAAL--GVKAVWLQPGAESEELIEAAREAGIRV 105 (116)
T ss_dssp CSEETTEE-BSSGGGCSST--SEEEE-S-H--------HHHHHHHHHHHHH--T-SEEEE-TTS--HHHHHHHHHTT-EE
T ss_pred ceEECcEEeeccccCCCCC-CCEEEEEcCH--------HHHHHHHHHHHHc--CCCEEEEEcchHHHHHHHHHHHcCCEE
Confidence 4556665555544432122 5555444433 2334455555555 899999999999999999999999998
Q ss_pred EE
Q 047585 157 EG 158 (185)
Q Consensus 157 ~~ 158 (185)
.|
T Consensus 106 ig 107 (116)
T PF13380_consen 106 IG 107 (116)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 160
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=48.89 E-value=31 Score=20.32 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=17.3
Q ss_pred HhhHHHHHH-cCCeEEEEEeeEE
Q 047585 143 VASQRVLEK-AGFKREGVLGKYF 164 (185)
Q Consensus 143 ~~a~~~y~~-~GF~~~~~~~~~~ 164 (185)
..|.+||++ +||+.........
T Consensus 7 ~~a~~FY~~~lg~~~~~~~~~~~ 29 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDDPDYV 29 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEETSEE
T ss_pred HHHHHHHHHhcCCEEEEeCCCeE
Confidence 479999998 9999988555443
No 161
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=48.68 E-value=70 Score=24.01 Aligned_cols=102 Identities=12% Similarity=0.187 Sum_probs=58.3
Q ss_pred eeeCCccCHHHHHHHcCCccceeccCCCCCCChHHHHHHHHHhcCCCC----ceEEEeE--CCeeEEEEEeeeCCCC---
Q 047585 22 LRPLELSDIDDFMVWVSDPKVARFCPWESYTNKEDGINYIKTKVPQHP----WFRAICV--NNRPVGATSVRPNSGN--- 92 (185)
Q Consensus 22 ir~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~iG~~~~~~~~~~--- 92 (185)
|.-.....+++++.++....+...... .......+|++-.+.+.+ ++.++.. ..++||++...+..-.
T Consensus 84 idv~N~~ql~dv~~lL~eNYVED~~ag---~rf~Y~~EFl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vRg 160 (451)
T COG5092 84 IDVANKKQLEDVFVLLEENYVEDIYAG---HRFRYSVEFLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVRG 160 (451)
T ss_pred EeccccchhHHHHHHHHhhhhhhhhhh---hHHHHHHHHHHHhhcCCCCceeeEEEEEEcccceeEEEEecceeEEEEcc
Confidence 333445566666666654333221111 112233455554444332 5555555 5699999987664311
Q ss_pred -CCceeeee-EEECcccccccHHHHHHHHHHHHHhh
Q 047585 93 -DMCRAELG-YVLASKYWGKGIATQAVKIVTKTIFD 126 (185)
Q Consensus 93 -~~~~~~~~-~~v~~~~rg~G~g~~l~~~~~~~~~~ 126 (185)
.....++. ++|+.+.|++.+...++..+...+-.
T Consensus 161 K~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~ 196 (451)
T COG5092 161 KRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANV 196 (451)
T ss_pred cccccceEEEEEEehhhhhCccchHHHHHHHHhhhh
Confidence 11125554 56899999999999999998877633
No 162
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=47.91 E-value=22 Score=21.30 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=13.3
Q ss_pred HhhHHHHHH-cCCeEEE
Q 047585 143 VASQRVLEK-AGFKREG 158 (185)
Q Consensus 143 ~~a~~~y~~-~GF~~~~ 158 (185)
..|.+||++ +||+...
T Consensus 12 ~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 12 EAAAAFYADVLGLDVVM 28 (112)
T ss_pred HHHHHHHHHhcCceEEE
Confidence 478999987 9999764
No 163
>PRK12303 tumor necrosis factor alpha-inducing protein; Reviewed
Probab=45.92 E-value=49 Score=20.94 Aligned_cols=49 Identities=18% Similarity=0.382 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEE
Q 047585 110 KGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREG 158 (185)
Q Consensus 110 ~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~ 158 (185)
+.+-.+++-++.+-..+.+-++.++-+++.+.|+...++.+..||....
T Consensus 103 qkitnemfiqmtqpiydslmnvdrlgiyinpnneevfalvrargfdkda 151 (192)
T PRK12303 103 QKITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDA 151 (192)
T ss_pred HHHhHHHHHHhccHHHHHhhcchheeeeeCCCcHHHHHHHHHhcCCHHH
Confidence 3455555555554444443388999999999999999999999997643
No 164
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=45.14 E-value=1.2e+02 Score=23.51 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=45.3
Q ss_pred CCeeEEEEEeeeCCCCCCceeee-eEEECccccc-ccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHH--HHc
Q 047585 77 NNRPVGATSVRPNSGNDMCRAEL-GYVLASKYWG-KGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVL--EKA 152 (185)
Q Consensus 77 ~~~~iG~~~~~~~~~~~~~~~~~-~~~v~~~~rg-~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y--~~~ 152 (185)
.|.-.|.+.+......+.....+ -+.|.++.|| -|++..++..+-+ .+| +.+..--..+|. +.++| ++.
T Consensus 381 sgdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e----~fP--~eL~WRSR~~N~-vNkwYf~rSv 453 (495)
T COG5630 381 SGDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDAVFNIMRE----EFP--NELFWRSRHNNQ-VNKWYFARSV 453 (495)
T ss_pred eccceeeEEEEeeccCCCCCcceeeeeccccccccchHHHHHHHHHHH----hCc--HhhhhhhcccCc-chheeeehhh
Confidence 67777777777764333222455 4889999999 8999776666544 442 234444555554 44444 456
Q ss_pred CCeEE
Q 047585 153 GFKRE 157 (185)
Q Consensus 153 GF~~~ 157 (185)
|+-..
T Consensus 454 g~lk~ 458 (495)
T COG5630 454 GYLKQ 458 (495)
T ss_pred ehhhc
Confidence 66444
No 165
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=44.88 E-value=2.1e+02 Score=25.91 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=45.3
Q ss_pred CCeeEEEEEeeeCCCCCCceeeeeEEE-CcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 77 NNRPVGATSVRPNSGNDMCRAELGYVL-ASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 77 ~~~~iG~~~~~~~~~~~~~~~~~~~~v-~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
+|+++|++.+.+... +. +.+.+.- +|+. -+|+.--|+..++.++++. |++.+.+...+-
T Consensus 429 ~G~i~af~s~~p~~~-~g--~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~--G~~~~sLg~APl 488 (1094)
T PRK02983 429 DGQVVALLSFVPWGR-RG--LSLDLMRRSPDA-PNGVIELMVAELALEAESL--GITRISLNFAVF 488 (1094)
T ss_pred CCeEEEEEEEeeeCC-CC--EEEEecccCCCC-CCCHHHHHHHHHHHHHHHc--CCCEEEechhhh
Confidence 799999999999642 21 4444333 2553 6899999999999999888 999999987764
No 166
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=44.84 E-value=70 Score=21.98 Aligned_cols=46 Identities=11% Similarity=0.193 Sum_probs=32.3
Q ss_pred CcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 104 ASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 104 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
.+++|.-|+|.+++..+ |++++.+-.. |..-+.-....|-..++..
T Consensus 121 ~~d~R~yGiGAQIL~dL---------GV~~~rLLtn--~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 121 PADERDFSLCADILEDL---------GVKKVRLLTN--NPKKIEILKKAGINIVERV 166 (191)
T ss_pred cccceehhHHHHHHHHc---------CCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 34689999996666544 9999877654 5556666777777776554
No 167
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=44.45 E-value=22 Score=26.83 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=14.2
Q ss_pred CCeeEEEEEeeeCCCCCCceeeeeEEECcccccccHH
Q 047585 77 NNRPVGATSVRPNSGNDMCRAELGYVLASKYWGKGIA 113 (185)
Q Consensus 77 ~~~~iG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g 113 (185)
+|++||-..+.+...... ...|-.+...|||||+-
T Consensus 323 hGQ~vgrLvyE~m~~~P~--~lYG~~~gSnYq~QgLk 357 (364)
T PF06559_consen 323 HGQIVGRLVYERMAERPE--RLYGAGIGSNYQGQGLK 357 (364)
T ss_dssp TT-EEEEEEEEEBSS------TTSS------------
T ss_pred CCcEEEEEEehhhccCcc--ccccccccccchhhhhh
Confidence 899999999988875433 23355588999999973
No 168
>COG2994 HlyC ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]
Probab=44.06 E-value=89 Score=20.37 Aligned_cols=86 Identities=13% Similarity=0.028 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCc---------------e---eeeeEEECcccccccHHH
Q 047585 53 NKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMC---------------R---AELGYVLASKYWGKGIAT 114 (185)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~---------------~---~~~~~~v~~~~rg~G~g~ 114 (185)
...+...++--.+..+.+.++-..+|+|||+|.....+..... + ..+=.+|.| -|-++
T Consensus 37 pV~e~~~~iLPalk~~Qf~ly~de~g~Piaf~~WA~vde~~e~~lL~~~~~l~p~dW~SG~~iwii~~iAP----fGh~r 112 (148)
T COG2994 37 PVAEISRNILPALKLGQFALYFDEHGRPIAFCTWAFVDEQAEEELLENDRNLSPEDWASGNNIWIIDWIAP----FGHSR 112 (148)
T ss_pred cHHHHHHHHhHHHhcCceEEEEcCCCCeeEEEEEeecCHHHHHHHHhCCCCCChhhccCCCeeEEEEEEcc----CCchH
Confidence 3455555555555544444444359999999999887653211 0 111122444 37778
Q ss_pred HHHHHHHHHHhhhCCCccEEEEEeccCCHhhH
Q 047585 115 QAVKIVTKTIFDEWPHLERLEAVVDVENVASQ 146 (185)
Q Consensus 115 ~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~ 146 (185)
.+...+...+|-. . .+...++..|.+.+
T Consensus 113 ~~~~dl~~~lFp~--~--~vr~~~~~~~dk~l 140 (148)
T COG2994 113 QMVKDLHRNLFPD--R--TVRALYHKGNDKGL 140 (148)
T ss_pred HHHHHHHHHhCch--h--hhhheeecCCCcce
Confidence 8887676666554 2 34455556665544
No 169
>PF02794 HlyC: RTX toxin acyltransferase family; InterPro: IPR003996 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. Other residues, including His23 and two conserved tyrosine residues, also appear to be important []. ; GO: 0016746 transferase activity, transferring acyl groups, 0009404 toxin metabolic process, 0005737 cytoplasm
Probab=43.60 E-value=88 Score=20.14 Aligned_cols=38 Identities=16% Similarity=-0.018 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCC
Q 047585 53 NKEDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSG 91 (185)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~ 91 (185)
+..+...++--.+..+.+.++. .+|.|||++.....+.
T Consensus 20 ~l~~l~~~~lpai~~~Q~~l~~-~~g~Pvaf~~WA~ls~ 57 (133)
T PF02794_consen 20 PLSDLEQLLLPAIKLGQYRLYS-EDGRPVAFCSWAFLSE 57 (133)
T ss_pred cHHHHHHHHHHHHhhCcEEEEE-eCCeEEEEEEhhcCCH
Confidence 5666777777666655555555 7999999999877654
No 170
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=43.25 E-value=71 Score=18.99 Aligned_cols=33 Identities=9% Similarity=-0.083 Sum_probs=21.4
Q ss_pred cEEEEEeccCCHhhHHHHHH-cCCeEEEEEeeEEE
Q 047585 132 ERLEAVVDVENVASQRVLEK-AGFKREGVLGKYFI 165 (185)
Q Consensus 132 ~~i~~~~~~~N~~a~~~y~~-~GF~~~~~~~~~~~ 165 (185)
..+.+.+. +=.++++||++ +||+.........+
T Consensus 4 ~hv~l~v~-d~~~~~~FY~~~lg~~~~~~~~~~~~ 37 (117)
T cd07240 4 AYAELEVP-DLERALEFYTDVLGLTVLDRDAGSVY 37 (117)
T ss_pred eEEEEecC-CHHHHHHHHHhccCcEEEeecCCeEE
Confidence 34444433 23589999998 99998876544333
No 171
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=43.00 E-value=75 Score=21.96 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=32.5
Q ss_pred CcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 104 ASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 104 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
.+++|.-|+|.+++..+ |++++.+-.. |..-+.-....|...++..
T Consensus 124 ~~d~R~yGiGAQIL~dL---------GV~~mrLLtn--~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 124 AADERDYTLAADMLKAL---------GVKKVRLLTN--NPKKVEALTEAGINIVERV 169 (197)
T ss_pred CccceehhHHHHHHHHc---------CCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 45689999996665543 9999887554 5555666677777777654
No 172
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=42.80 E-value=58 Score=19.63 Aligned_cols=28 Identities=4% Similarity=0.089 Sum_probs=18.6
Q ss_pred cEEEEEeccCCHhhHHHHHH-cCCeEEEEE
Q 047585 132 ERLEAVVDVENVASQRVLEK-AGFKREGVL 160 (185)
Q Consensus 132 ~~i~~~~~~~N~~a~~~y~~-~GF~~~~~~ 160 (185)
..+.+.|. +=..|.+||++ +||+.....
T Consensus 3 ~hv~l~v~-d~~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 3 HHVTLITR-DAQETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred ccEEEEcC-ChhHhHHHHHHccCCEEeeeE
Confidence 34555443 33589999985 899876654
No 173
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=41.50 E-value=1e+02 Score=20.33 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhhCCCccEEEEEe-----------ccCCHhhHHHHHHcCCeEEEEEe
Q 047585 113 ATQAVKIVTKTIFDEWPHLERLEAVV-----------DVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 113 g~~l~~~~~~~~~~~~~~~~~i~~~~-----------~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
+..+.+.+.+.+.+. |+..+.+.+ -+.-..+++-+.+.|++.....+
T Consensus 74 Aq~aa~~~a~k~~~~--Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~D 131 (149)
T PTZ00129 74 AMMAAQDVAARCKEL--GINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIED 131 (149)
T ss_pred HHHHHHHHHHHHHHc--CCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 345566667777665 999999999 46678999999999999877643
No 174
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=41.07 E-value=20 Score=20.70 Aligned_cols=36 Identities=6% Similarity=0.028 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHc
Q 047585 115 QAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKA 152 (185)
Q Consensus 115 ~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~ 152 (185)
+++..+.+.-|... . -.+++.+++.+..|+..|...
T Consensus 3 ~LL~~I~~~~Fa~~-d-l~LyLDTHP~d~~Al~~y~~~ 38 (78)
T PF12652_consen 3 ELLREIQEVSFAVV-D-LNLYLDTHPDDQEALEYYNEY 38 (78)
T ss_pred HHHHHHHHHhhHHH-H-HHHHhcCCCCcHHHHHHHHHH
Confidence 45566655555552 3 348899999999999988753
No 175
>PRK00756 acyltransferase NodA; Provisional
Probab=41.01 E-value=23 Score=23.77 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=32.2
Q ss_pred eeeeEE-ECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHc
Q 047585 97 AELGYV-LASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKA 152 (185)
Q Consensus 97 ~~~~~~-v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~ 152 (185)
+++|++ |.|+..|.||+..+ ..+.-.+ +.+ ++.--.-+|.. +.++-.+++
T Consensus 86 aElGLygVRpDLEGlGi~~S~-r~m~PvL-q~L-gVPF~FGtVR~---al~~Hv~R~ 136 (196)
T PRK00756 86 AELGLYGVRPDLEGLGIAHSI-RAMYPVL-QEL-GVPFAFGTVRH---ALRNHVERL 136 (196)
T ss_pred EEeeeeeeccccccccchhhH-HHHHHHH-Hhc-CCCeecccchH---HHHHHHHHH
Confidence 777754 99999999999876 3444433 555 87766666643 344444443
No 176
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=41.00 E-value=73 Score=19.09 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=15.1
Q ss_pred CCHhhHHHHH-HcCCeEEEEE
Q 047585 141 ENVASQRVLE-KAGFKREGVL 160 (185)
Q Consensus 141 ~N~~a~~~y~-~~GF~~~~~~ 160 (185)
+=..|.+||. .+||......
T Consensus 11 d~~~a~~FY~~~lG~~~~~~~ 31 (122)
T cd07246 11 DAAAAIDFYKKAFGAEELERM 31 (122)
T ss_pred CHHHHHHHHHHhhCCEEEEEE
Confidence 3358899997 5899987654
No 177
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=40.80 E-value=1.4e+02 Score=21.62 Aligned_cols=101 Identities=8% Similarity=-0.068 Sum_probs=63.9
Q ss_pred CCCChHHHHHHHHHhcCCCCceEEEe-----ECCeeEEEEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHH
Q 047585 50 SYTNKEDGINYIKTKVPQHPWFRAIC-----VNNRPVGATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTI 124 (185)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~ 124 (185)
...+..+...++....-.....-.-. ..|++|+.......+..- ..+..+-+|++....+|+-++-.=+.+|
T Consensus 127 ~~~s~~~f~~f~~d~~~~~~~~e~r~~~~~~~~G~LvAVavtDvL~dGl---SsVY~FydPd~s~~SLGt~~iL~~I~~a 203 (253)
T COG2935 127 SDMSFKDFAAFLEDTHVNTQLIEYRRRKPGKGEGKLVAVAVTDVLPDGL---SSVYTFYDPDMSKRSLGTLSILDQIAIA 203 (253)
T ss_pred CCccHHHHHHHHhccccceeeEEEEecCCCCCCCcEEEEEeeecccCcc---eeEEEEeCCChhhhcchHHHHHHHHHHH
Confidence 34456666666665433222222222 268888877766554321 3344567999999999998888888888
Q ss_pred hhhCCCccEEEEEeccCCHhhHHHHHHcCCeEE
Q 047585 125 FDEWPHLERLEAVVDVENVASQRVLEKAGFKRE 157 (185)
Q Consensus 125 ~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~ 157 (185)
.+. |...+++.-.-.+ +.++--|.-|++.
T Consensus 204 q~~--~l~yvYLGYwI~~--c~KM~YKa~f~P~ 232 (253)
T COG2935 204 QRL--GLPYVYLGYWIKG--CPKMNYKARFSPL 232 (253)
T ss_pred HHh--CCCeEEEEEEECC--ccccCcccccChH
Confidence 777 9999999877655 3333344555443
No 178
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=40.28 E-value=50 Score=21.11 Aligned_cols=38 Identities=18% Similarity=0.066 Sum_probs=25.3
Q ss_pred ECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 103 LASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 103 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
-..-|+|+||..+.++-+-+.+..-- .-..|.+...++
T Consensus 12 Cmq~y~GkGYS~~FveN~d~I~~rL~-~ge~i~lV~g~D 49 (135)
T COG3543 12 CMQGYQGKGYSPAFVENYDAIAERLK-AGEDIKLVDGPD 49 (135)
T ss_pred eeeecccccCCHHHHHHHHHHHHHhh-cCCCeEEEeccc
Confidence 34779999999999888777775543 344455544443
No 179
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=39.63 E-value=80 Score=18.53 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=14.9
Q ss_pred HhhHHHHHH-cCCeEEEEE
Q 047585 143 VASQRVLEK-AGFKREGVL 160 (185)
Q Consensus 143 ~~a~~~y~~-~GF~~~~~~ 160 (185)
.++.+||++ +||+.....
T Consensus 10 ~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 10 ERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHhccCeEEEEEc
Confidence 489999999 999976654
No 180
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=38.26 E-value=96 Score=24.12 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=36.0
Q ss_pred ECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 103 LASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 103 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
..+++|.-|+|.++++.+ |++++.+-+ +|+.-+.-.+..|.+..++..
T Consensus 309 ~~~D~RdygigAqIL~dL---------GV~~irLLT--Nnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 309 FKEDERDYAAAFQILKAL---------GIEKVRLLT--NNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred CCccceeeeHHHHHHHHc---------CCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 456788889996665544 999987755 477778888899999887653
No 181
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=37.46 E-value=94 Score=25.43 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=33.7
Q ss_pred CcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 104 ASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 104 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
.++.|.-|+|.+++.. + |+++|.+-+ +|+.-+.-.+..|.+.+++..
T Consensus 333 ~~D~RdYgigAQIL~d--------L-GI~kIrLLT--NNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 333 PADLRNYGVGAQILND--------L-GIKRLRLIT--NNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred cccceehhHHHHHHHH--------c-CCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 4556666666444433 3 999988765 488888889999999887654
No 182
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=36.75 E-value=68 Score=19.46 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=20.5
Q ss_pred CccEEEEEeccCCHhhHHHHHH-cCCeEEEEE
Q 047585 130 HLERLEAVVDVENVASQRVLEK-AGFKREGVL 160 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~~ 160 (185)
++..+.+.|.. =.+|.+||.+ +||+.....
T Consensus 4 ~l~hv~l~v~D-l~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 4 RPGHVQLRVLD-LEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred eEeEEEEEeCC-HHHHHHHHHhccCCEeeeec
Confidence 44556665543 3589999975 999876653
No 183
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=36.69 E-value=60 Score=23.64 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=28.6
Q ss_pred EEEEEeccCCHhhHHHHHH-cCCeEEEEEeeEEEEC-CeeeeeEEE
Q 047585 133 RLEAVVDVENVASQRVLEK-AGFKREGVLGKYFIMK-GSTKDMVVF 176 (185)
Q Consensus 133 ~i~~~~~~~N~~a~~~y~~-~GF~~~~~~~~~~~~~-g~~~d~~~~ 176 (185)
.|-+.|.. =..|..||++ +||..........++. |.|+..+-+
T Consensus 171 HvHL~v~~-l~eA~~fY~~~LG~~~~~~~~~A~F~a~G~YHHHia~ 215 (265)
T COG2514 171 HVHLKVAD-LEEAEQFYEDVLGLEVTARGPSALFLASGDYHHHLAA 215 (265)
T ss_pred EEEEEeCC-HHHHHHHHHHhcCCeeeecCCcceEEecCCcceeEEE
Confidence 34444432 3578999998 9999988866565554 776655443
No 184
>PRK10291 glyoxalase I; Provisional
Probab=36.59 E-value=46 Score=20.58 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=14.2
Q ss_pred HhhHHHHHH-cCCeEEEEE
Q 047585 143 VASQRVLEK-AGFKREGVL 160 (185)
Q Consensus 143 ~~a~~~y~~-~GF~~~~~~ 160 (185)
.+|++||++ +||+.....
T Consensus 8 e~s~~FY~~~LG~~~~~~~ 26 (129)
T PRK10291 8 QRSIDFYTNVLGMKLLRTS 26 (129)
T ss_pred HHHHHHHHhccCCEEEEee
Confidence 589999976 999876543
No 185
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=36.36 E-value=79 Score=24.36 Aligned_cols=45 Identities=13% Similarity=0.274 Sum_probs=29.7
Q ss_pred CcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 104 ASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 104 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
.++.|.-|+|.+++. .+ |++++.+-+ |+.-+.-++.+|.+..++.
T Consensus 318 ~~d~R~y~igaqIL~--------~L-gv~~irLlT---np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 318 PVDYRTYGIGAQILR--------DL-GVGKMRLLS---SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred CcccceehHHHHHHH--------Hc-CCCeEEECC---CcHHHHhhhhCCcEEEEEe
Confidence 344555555544333 33 999999876 5666777788888887654
No 186
>PLN02300 lactoylglutathione lyase
Probab=35.76 E-value=58 Score=23.77 Aligned_cols=41 Identities=7% Similarity=-0.113 Sum_probs=26.6
Q ss_pred HHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHH-cCCeEEEE
Q 047585 118 KIVTKTIFDEWPHLERLEAVVDVENVASQRVLEK-AGFKREGV 159 (185)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~ 159 (185)
+.+++|.+...-.+..+.+.|..- .+|++||+. +||+....
T Consensus 12 ~~~~~~~~~~i~~l~Hv~l~V~Dl-e~s~~FY~~vLG~~~~~~ 53 (286)
T PLN02300 12 EDLLEWPKKDKRRMLHVVYRVGDL-DRTIKFYTECLGMKLLRK 53 (286)
T ss_pred hhhhcCCccccceEEEEEEEeCCH-HHHHHHHHHhcCCEEEEe
Confidence 456666633322566666665533 589999976 89988654
No 187
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=34.73 E-value=81 Score=22.75 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.1
Q ss_pred EEECcccccccHHHHHHHHHHHHH
Q 047585 101 YVLASKYWGKGIATQAVKIVTKTI 124 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~l~~~~~~~~ 124 (185)
+||.+.-|++|+++.+++.+....
T Consensus 189 IWV~s~~Rr~gIAs~lldva~~~~ 212 (257)
T KOG3014|consen 189 IWVSSLRRRKGIASLLLDVARCNF 212 (257)
T ss_pred EEeehhhhhhhhHHHHHHHHHHhh
Confidence 789999999999999998887654
No 188
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=34.70 E-value=61 Score=23.28 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=33.2
Q ss_pred ECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 103 LASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 103 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
+-|.|-..|++|..++...+|+...+ |-+.+++..-+.
T Consensus 151 ~vPnYNvMGvAKAaLEasvRyLA~dl-G~~gIRVNaISA 188 (259)
T COG0623 151 VVPNYNVMGVAKAALEASVRYLAADL-GKEGIRVNAISA 188 (259)
T ss_pred ecCCCchhHHHHHHHHHHHHHHHHHh-CccCeEEeeecc
Confidence 77999999999999999999999988 888888766544
No 189
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.53 E-value=66 Score=19.30 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=21.8
Q ss_pred CccEEEEEeccCCHhhHHHHHH-cCCeEEEEEe
Q 047585 130 HLERLEAVVDVENVASQRVLEK-AGFKREGVLG 161 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~~~ 161 (185)
++..+.+.|. +=.++++||++ +||+......
T Consensus 3 ~l~hi~l~v~-d~~~s~~Fy~~~lG~~~~~~~~ 34 (125)
T cd07253 3 RIDHVVLTVA-DIEATLDFYTRVLGMEVVRFGE 34 (125)
T ss_pred ccceEEEEec-CHHHHHHHHHHHhCceeecccc
Confidence 4556666664 33589999988 8998876543
No 190
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.47 E-value=55 Score=23.64 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=30.4
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEecc-CC
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDV-EN 142 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~-~N 142 (185)
+...|.-.|...+..++++|.+. |++.+.+++.+ .|
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~~~--GI~~vT~yaFS~eN 77 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCKDW--GIGALTAYAFSTEN 77 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHc--CCCEEEEeecchhh
Confidence 44567788999999999999876 99999999988 44
No 191
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.42 E-value=1.1e+02 Score=18.44 Aligned_cols=45 Identities=9% Similarity=0.163 Sum_probs=26.7
Q ss_pred ccceeccCCCCCCChHHHHHHHHHhcCCCCceEEEeECCeeEEEE
Q 047585 40 PKVARFCPWESYTNKEDGINYIKTKVPQHPWFRAICVNNRPVGAT 84 (185)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~ 84 (185)
+....+.....++..+....+.+...++.-++-++..++++||-.
T Consensus 44 ~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvedeiVaeG 88 (106)
T COG4837 44 PFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDEIVAEG 88 (106)
T ss_pred CcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcceEeecC
Confidence 333444444344455666677766666555555666688888743
No 192
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=34.41 E-value=1.1e+02 Score=21.07 Aligned_cols=49 Identities=10% Similarity=0.241 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHHHHhhhCCCccEEEEEeccCC--HhhHHHHHHcCCeEEEE
Q 047585 109 GKGIATQAVKIVTKTIFDEWPHLERLEAVVDVEN--VASQRVLEKAGFKREGV 159 (185)
Q Consensus 109 g~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N--~~a~~~y~~~GF~~~~~ 159 (185)
+.-.-.++++.+++.+++. |...+.+.-.+.. ....+.++..||.....
T Consensus 17 ~~~T~P~vv~avv~~l~~~--g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 17 GATTHPEVVRAVVEMLKEA--GAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred CccCCHHHHHHHHHHHHHc--CCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 3344467889999999877 7776666555443 47899999999987643
No 193
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=34.29 E-value=98 Score=21.07 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 113 ATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 113 g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
|+.|+..+++-+.+ .+.++.+.+.++-+....+.++.|++...+..
T Consensus 26 GkpLI~~v~~al~~---~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG 71 (177)
T COG2266 26 GKPLIDRVLEALRK---IVDEIIVAISPHTPKTKEYLESVGVKVIETPG 71 (177)
T ss_pred CccHHHHHHHHHHh---hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCC
Confidence 46677777777644 48899999999999999999999988776643
No 194
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=33.87 E-value=89 Score=17.36 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=16.1
Q ss_pred HhhHHHHHHcCCeEEEEEeeE
Q 047585 143 VASQRVLEKAGFKREGVLGKY 163 (185)
Q Consensus 143 ~~a~~~y~~~GF~~~~~~~~~ 163 (185)
...++..++.||..+...-.+
T Consensus 10 ke~ik~Le~~Gf~~vrqkGSH 30 (66)
T COG1724 10 KEVIKALEKDGFQLVRQKGSH 30 (66)
T ss_pred HHHHHHHHhCCcEEEEeecce
Confidence 457899999999988765433
No 195
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=33.53 E-value=1.1e+02 Score=18.50 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=19.8
Q ss_pred ccEEEEEeccCCHhhHHHHHH-cCCeEEEEEe
Q 047585 131 LERLEAVVDVENVASQRVLEK-AGFKREGVLG 161 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~~~ 161 (185)
+..+.+.|. +=..+++||++ +||+......
T Consensus 2 i~hv~l~v~-d~~~~~~FY~~vLG~~~~~~~~ 32 (121)
T cd07244 2 INHITLAVS-DLERSVAFYVDLLGFKLHVRWD 32 (121)
T ss_pred cceEEEEEC-CHHHHHHHHHHhcCCEEEEecC
Confidence 344555553 22589999975 9998866543
No 196
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=33.29 E-value=1.2e+02 Score=18.70 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=18.6
Q ss_pred EEEEEeccCCHhhHHHHHH-cCCeEEEEEe
Q 047585 133 RLEAVVDVENVASQRVLEK-AGFKREGVLG 161 (185)
Q Consensus 133 ~i~~~~~~~N~~a~~~y~~-~GF~~~~~~~ 161 (185)
.+.+.+.. =.++++||++ +||+......
T Consensus 4 hv~l~v~D-~~~s~~FY~~~lG~~~~~~~~ 32 (134)
T cd08348 4 HVVLYVRD-LEAMVRFYRDVLGFTVTDRGP 32 (134)
T ss_pred EEEEEecC-HHHHHHHHHHhcCCEEEeecc
Confidence 34444432 3589999987 9999876544
No 197
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=33.26 E-value=1.2e+02 Score=21.66 Aligned_cols=40 Identities=8% Similarity=0.133 Sum_probs=29.0
Q ss_pred HHHHHHHhhhCCCccEEEEEe---ccCCHhhHHHHHHcCCeEEEE
Q 047585 118 KIVTKTIFDEWPHLERLEAVV---DVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~~~---~~~N~~a~~~y~~~GF~~~~~ 159 (185)
.++++-+ +.+ |+++|.+-+ .+-|....+||+..||+....
T Consensus 109 ~A~~~AL-~al-g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 109 SAAVDGL-AAL-GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred HHHHHHH-HHc-CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeee
Confidence 3334433 555 999988754 344788999999999998775
No 198
>PRK14968 putative methyltransferase; Provisional
Probab=33.15 E-value=1.3e+02 Score=19.91 Aligned_cols=45 Identities=20% Similarity=0.045 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 115 QAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 115 ~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
.+++.+...++.. |.--+.......+.....++++.||+......
T Consensus 129 ~~i~~~~~~Lk~g--G~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 129 RFLDEVGRYLKPG--GRILLLQSSLTGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred HHHHHHHHhcCCC--eEEEEEEcccCCHHHHHHHHHHCCCeeeeeee
Confidence 4556666666443 42223222333456789999999998766544
No 199
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=32.34 E-value=1.3e+02 Score=24.05 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=33.3
Q ss_pred CcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 104 ASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 104 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
.+++|.-|+|.+++..+ |++++.+-+. |+.-+.-.+.+|...+++..
T Consensus 363 ~~D~RdygigAqIL~dL---------GI~~irLLTN--Np~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 363 PVDSREYGIGAQILRDL---------GVRTMRLMTN--NPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred cccceehHHHHHHHHHc---------CCCEEEECCC--CHHHHHHHhhCCCEEEEEec
Confidence 45667777775555433 9999887554 77777788899998886653
No 200
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=32.26 E-value=76 Score=20.85 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=19.4
Q ss_pred CccEEEEEeccCCHhhHHHHHH-cCCeEE
Q 047585 130 HLERLEAVVDVENVASQRVLEK-AGFKRE 157 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~-~GF~~~ 157 (185)
++..+.+.|.. =.+|++||++ +||+..
T Consensus 4 ~i~Hv~i~V~D-le~s~~FY~~~LG~~~~ 31 (162)
T TIGR03645 4 TFSHIGISVPD-LDAAVKFYTEVLGWYLI 31 (162)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHhcCCEEE
Confidence 45666666543 3689999976 899775
No 201
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=32.15 E-value=99 Score=23.87 Aligned_cols=28 Identities=7% Similarity=-0.015 Sum_probs=21.3
Q ss_pred CccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 130 HLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
|++++.+- +|+.-+.-++..|.+.+++.
T Consensus 338 GV~kirLL---nNP~K~~~L~~~GIeV~~~v 365 (369)
T PRK12485 338 GVGKLRHL---GPPLKYAGLTGYDLEVVESI 365 (369)
T ss_pred CCCEEEEC---CCchhhhhhhhCCcEEEEEe
Confidence 99999987 46666777788888877653
No 202
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=32.08 E-value=1.3e+02 Score=18.66 Aligned_cols=61 Identities=18% Similarity=0.090 Sum_probs=38.4
Q ss_pred CCeeEEEEEeeeCCCC---CCceeee-eEEECccccc-ccHHHHHHHHHHHHHhhhCCCccE-EEEEeccCCHh
Q 047585 77 NNRPVGATSVRPNSGN---DMCRAEL-GYVLASKYWG-KGIATQAVKIVTKTIFDEWPHLER-LEAVVDVENVA 144 (185)
Q Consensus 77 ~~~~iG~~~~~~~~~~---~~~~~~~-~~~v~~~~rg-~G~g~~l~~~~~~~~~~~~~~~~~-i~~~~~~~N~~ 144 (185)
++..-|.+.+...... ....+.+ .+.|.+..|| .|++-.+...+.+ +..+ +...+.++|+.
T Consensus 17 ~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~-------~fp~~L~Wrsr~~n~~ 83 (108)
T cd04266 17 AGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLD-------GFPNELIWRSRKDNPV 83 (108)
T ss_pred eCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHH-------cCCCceEEEeCCCCcc
Confidence 5555555555443221 1122455 5889999997 8999888877755 2333 77778887764
No 203
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=31.57 E-value=1.1e+02 Score=18.63 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=19.6
Q ss_pred ccEEEEEeccCCHhhHHHHHHc----CCeEEEEE
Q 047585 131 LERLEAVVDVENVASQRVLEKA----GFKREGVL 160 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~~~----GF~~~~~~ 160 (185)
+..+.+.|. +=.++.+||++. ||+.....
T Consensus 2 i~Hv~i~v~-d~~~~~~Fy~~~l~~~G~~~~~~~ 34 (128)
T cd07242 2 IHHVELTVR-DLERSRAFYDWLLGLLGFEEVKEW 34 (128)
T ss_pred CceEEEEeC-CHHHHHHHHHHHHhhcCCEEEEee
Confidence 344555553 335889999885 99987653
No 204
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=30.93 E-value=1.5e+02 Score=19.38 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=19.8
Q ss_pred ccEEEEEeccCCHhhHHHHHH-cCCeEEEEEe
Q 047585 131 LERLEAVVDVENVASQRVLEK-AGFKREGVLG 161 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~~~ 161 (185)
++.+.+.|.. =.++.+||++ +||+......
T Consensus 2 l~HI~i~V~D-le~s~~FY~~~LG~~~~~~~~ 32 (157)
T cd08347 2 LHGVTLTVRD-PEATAAFLTDVLGFREVGEEG 32 (157)
T ss_pred cccEEEEeCC-HHHHHHHHHHhcCCEEEeeeC
Confidence 4445555543 3689999965 7998876543
No 205
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=30.90 E-value=93 Score=18.79 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.1
Q ss_pred HhhHHHHHH-cCCeEEE
Q 047585 143 VASQRVLEK-AGFKREG 158 (185)
Q Consensus 143 ~~a~~~y~~-~GF~~~~ 158 (185)
.+|.+||++ +||+...
T Consensus 12 ~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 12 EKTLEFYERAFGFERRF 28 (125)
T ss_pred HHHHHHHHHhhCCeEEe
Confidence 589999987 8998754
No 206
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=30.54 E-value=1.2e+02 Score=19.45 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=20.0
Q ss_pred CccEEEEEeccCCHhhHHHHHH-cCCeEEEE
Q 047585 130 HLERLEAVVDVENVASQRVLEK-AGFKREGV 159 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~ 159 (185)
.+..+.+.|..- .++.+||+. +||+....
T Consensus 6 ~l~Hv~l~v~Dl-e~s~~FY~~vLGf~~~~~ 35 (143)
T cd07243 6 RLDHCLLTGEDI-AETTRFFTDVLDFYLAER 35 (143)
T ss_pred eeCEEEEecCCH-HHHHHHHHHhcCCEEEEE
Confidence 345566655533 589999976 99987554
No 207
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=30.48 E-value=13 Score=31.01 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=58.3
Q ss_pred ceEEEeECCe-eEEEEEeeeCCCCCCceeeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHH
Q 047585 70 WFRAICVNNR-PVGATSVRPNSGNDMCRAELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRV 148 (185)
Q Consensus 70 ~~~~~~~~~~-~iG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~ 148 (185)
..+.+..++. +||.+++...+..... -.+-..|.-+-|-+|+|.-++..+.++....- .+..+...+.. -++..
T Consensus 420 ~~~~~~~d~~g~vggi~~r~f~~k~f~-eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~-~i~~~ltyad~---~aigy 494 (720)
T KOG1472|consen 420 HVMARIKDNEGVVGGICFRPFPEKGFT-EIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSS-TIDYALTYADE---GAIGY 494 (720)
T ss_pred ccceeeccccccccccccCcCcccCCc-ceeeccccCcccccccCcCchhhHHHHhhccc-hHHHHHHhhhh---ccccc
Confidence 3344444444 8999998888764332 33345588899999999999999999987752 24433333322 36778
Q ss_pred HHHcCCeEEEEEee
Q 047585 149 LEKAGFKREGVLGK 162 (185)
Q Consensus 149 y~~~GF~~~~~~~~ 162 (185)
+++.||...-.+..
T Consensus 495 fkkqgfs~ei~~~~ 508 (720)
T KOG1472|consen 495 FKKQGFSKEIKFEK 508 (720)
T ss_pred ccCccchhhccccc
Confidence 88889876554443
No 208
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=30.48 E-value=2.2e+02 Score=22.29 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCCCceEEEeECCeeEEEEEeeeCCCCCCceeeeeEEECcccc--cccHHHHHHHHHHHHHhhhCCCcc
Q 047585 55 EDGINYIKTKVPQHPWFRAICVNNRPVGATSVRPNSGNDMCRAELGYVLASKYW--GKGIATQAVKIVTKTIFDEWPHLE 132 (185)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~v~~~~r--g~G~g~~l~~~~~~~~~~~~~~~~ 132 (185)
+++..|++.....+ ++..++.+|++..+-.. .+.|-|+ =.|.+|+.++....++...+ +-.
T Consensus 199 edw~~Wi~al~~a~----lla~g~~~va~TY~G~~------------~t~p~Y~~g~mG~AKa~LE~~~r~La~~L-~~~ 261 (398)
T PRK13656 199 EDWELWIDALDEAG----VLAEGAKTVAYSYIGPE------------LTHPIYWDGTIGKAKKDLDRTALALNEKL-AAK 261 (398)
T ss_pred chHHHHHHHHHhcc----cccCCcEEEEEecCCcc------------eeecccCCchHHHHHHHHHHHHHHHHHHh-hhc
Confidence 34556666654422 23335566655444321 2567887 47999999999999998876 555
Q ss_pred EEEEEec
Q 047585 133 RLEAVVD 139 (185)
Q Consensus 133 ~i~~~~~ 139 (185)
.+.+.+.
T Consensus 262 giran~i 268 (398)
T PRK13656 262 GGDAYVS 268 (398)
T ss_pred CCEEEEE
Confidence 5555443
No 209
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=30.40 E-value=58 Score=19.29 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=15.1
Q ss_pred HhhHHHHHH-cCCeEEEEE
Q 047585 143 VASQRVLEK-AGFKREGVL 160 (185)
Q Consensus 143 ~~a~~~y~~-~GF~~~~~~ 160 (185)
.++.+||++ +||+.....
T Consensus 10 ~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 10 DKALAFYTEKLGFEVREDV 28 (119)
T ss_pred HHHHHHHHhccCeEEEEee
Confidence 578999998 999987764
No 210
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=30.33 E-value=1.4e+02 Score=23.34 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=32.3
Q ss_pred CcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 104 ASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 104 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
.++.|.-|+|.+++.. + |++++.+-+ +|+.-+.-.+..|.+..++.
T Consensus 329 ~~D~Rdyg~gaqIL~~--------L-Gv~~irLLT--nnp~K~~~L~~~GieV~~~v 374 (402)
T PRK09311 329 PADARDYGIGAQILVD--------L-GVRSMRLLT--NNPRKIAGLQGYGLHVTERV 374 (402)
T ss_pred CccceehhHHHHHHHH--------c-CCCEEEECC--CCHHHHHHHhhCCCEEEEEe
Confidence 4566777777555443 3 999987755 47767777889999888665
No 211
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=30.26 E-value=1.4e+02 Score=18.37 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=18.2
Q ss_pred ccEEEEEeccCCHhhHHHHHH-cCCeEEEE
Q 047585 131 LERLEAVVDVENVASQRVLEK-AGFKREGV 159 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~ 159 (185)
+..+.+.|. +=.+|.+||++ +||+....
T Consensus 7 l~~v~l~v~-d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 7 IAYVRLGTR-DLAGATRFATDILGLQVAER 35 (124)
T ss_pred eeEEEEeeC-CHHHHHHHHHhccCceeccC
Confidence 344555444 22489999987 79987544
No 212
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=29.67 E-value=79 Score=22.50 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=30.0
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
|...|.-.|...+..++++|.+. |++.+.+++.+.
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~~~--GI~~lT~yaFSt 54 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCANL--GVECLTLYAFST 54 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHc--CCCEEEEEEeeh
Confidence 55668888999999999999876 999999998765
No 213
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=29.63 E-value=1e+02 Score=18.60 Aligned_cols=30 Identities=17% Similarity=0.046 Sum_probs=20.6
Q ss_pred CccEEEEEeccCCHhhHHHHHH-cCCeEEEEE
Q 047585 130 HLERLEAVVDVENVASQRVLEK-AGFKREGVL 160 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~~ 160 (185)
++..+.+.|.. =..+++||.+ +||+.....
T Consensus 4 ~i~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~~ 34 (121)
T cd07266 4 RLGHVELRVTD-LEKSREFYVDVLGLVETEED 34 (121)
T ss_pred eeeEEEEEcCC-HHHHHHHHHhccCCEEeccC
Confidence 45556666642 3489999987 999876543
No 214
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.41 E-value=79 Score=22.56 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=29.7
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
|...|.-.|...+..++++|.+. |++.+.+++.+.
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c~~~--GI~~lT~YaFS~ 61 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHSLKL--GIKYLSLYVFST 61 (230)
T ss_pred chhhhHHHHHHHHHHHHHHHHHc--CCCEEEEEEeeh
Confidence 55667778999999999999876 999999998754
No 215
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=29.40 E-value=1.2e+02 Score=18.16 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=20.6
Q ss_pred CccEEEEEeccCCHhhHHHHH-HcCCeEEEE
Q 047585 130 HLERLEAVVDVENVASQRVLE-KAGFKREGV 159 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~-~~GF~~~~~ 159 (185)
++..+.+.|. +=.+|.+||. .+||+....
T Consensus 3 ~~~hi~l~v~-d~~~a~~fy~~~lG~~~~~~ 32 (125)
T cd08352 3 GIHHVAIICS-DYEKSKEFYVEILGFKVIRE 32 (125)
T ss_pred ccceEEEEcC-CHHHHHHHHHHhcCCEEeee
Confidence 5666777664 3358899997 599987543
No 216
>PRK04531 acetylglutamate kinase; Provisional
Probab=29.22 E-value=2.8e+02 Score=21.72 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=38.6
Q ss_pred CCeeEEEEEeeeCCCCCCceeee-eEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHh
Q 047585 77 NNRPVGATSVRPNSGNDMCRAEL-GYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVA 144 (185)
Q Consensus 77 ~~~~iG~~~~~~~~~~~~~~~~~-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~ 144 (185)
++..=|.+.+..... . +.+ .+.|.++.||.|++-.++..+.+ +..++...+.++|+.
T Consensus 295 ~~~y~~~Aiv~~~~~---~-~~Ldkf~v~~~~~~~~v~d~vf~~~~~-------~~~~L~Wrsr~~n~~ 352 (398)
T PRK04531 295 SENYRAAAILTETGG---G-PYLDKFAVLDDARGEGLGRAVWNVMRE-------ETPQLFWRSRHNNTI 352 (398)
T ss_pred eCCCcEEEEEecCCC---c-eEeEEEEEccchhhcChHHHHHHHHHh-------hCCceEEEcCCCCCc
Confidence 555555555554322 2 455 58899999999999877777744 334678888888874
No 217
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=28.67 E-value=64 Score=22.77 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=27.6
Q ss_pred ccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 106 KYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 106 ~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
...|...|.+.+..++++|.+. |++.+.+++.+.
T Consensus 16 ~~~Gh~~G~~~l~~i~~~~~~~--gI~~lTvYaFS~ 49 (223)
T PF01255_consen 16 RSEGHRAGAEKLKEIVEWCLEL--GIKYLTVYAFST 49 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--T-SEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEEecc
Confidence 4456778889999999999876 999999999774
No 218
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=28.67 E-value=67 Score=18.62 Aligned_cols=45 Identities=18% Similarity=0.051 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 114 TQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 114 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
.+++..+-+.....+ |.+.-...+...=.....-.++.||+.++-
T Consensus 25 P~LM~~LgA~~~~~l-gn~f~ey~~~~~Pr~VLnKLE~~G~kVvsm 69 (83)
T PF06399_consen 25 PELMAYLGAKKRTPL-GNNFKEYHVDDPPRVVLNKLEKMGYKVVSM 69 (83)
T ss_dssp HHHHHHHT-EEE--T-T-SS-EEEESS-HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHhcCceeccc-cCcceEEEcCCChHHHHHHHHhcCeEEEEE
Confidence 356666665544445 666666666655556778889999999875
No 219
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=28.60 E-value=1.3e+02 Score=18.78 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=21.0
Q ss_pred CccEEEEEeccCCHhhHHHHHH-cCCeEEEE
Q 047585 130 HLERLEAVVDVENVASQRVLEK-AGFKREGV 159 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~ 159 (185)
++..+.+.|. +-.+|++||+. +||.....
T Consensus 4 ~i~hv~l~V~-dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVK-DLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeC-CHHHHHHHHHHHhCCeeEEe
Confidence 5667777664 45689999976 99976543
No 220
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=28.57 E-value=1.7e+02 Score=20.12 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=30.9
Q ss_pred CcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 104 ASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 104 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
.+++|.-|+|.+++..+ |++++.+-.. |..-+.-....|-..++..
T Consensus 123 ~~d~R~yGiGAQIL~dL---------Gv~~mrLLs~--~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 123 PADARDYGLAAQILRDL---------GIKSVRLLTN--NPDKIDALEGYGIEVVERV 168 (193)
T ss_pred CccccchHHHHHHHHHc---------CCCeEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 44689999996665543 9999988665 4445555666666666544
No 221
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=28.08 E-value=88 Score=23.45 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=28.9
Q ss_pred EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEE
Q 047585 101 YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEA 136 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~ 136 (185)
+.|++.++.-|+|.++...+.+.+|..+ ...-..+
T Consensus 256 viV~Ea~~~~g~gaei~A~i~e~~f~~L-dAPi~Rv 290 (324)
T COG0022 256 VIVHEAPKTGGIGAEIAALIAEEAFDYL-DAPILRV 290 (324)
T ss_pred EEEEeccccCChHHHHHHHHHHHHHHhh-cCchhhh
Confidence 5588999999999999999999999886 6554443
No 222
>PRK08815 GTP cyclohydrolase; Provisional
Probab=27.87 E-value=1.7e+02 Score=22.69 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=34.4
Q ss_pred ECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 103 LASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 103 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
..++.|.-|+|.+++..+ |++++.+-+. |+.-+.-.+..|...++...
T Consensus 294 ~~~D~RdygigAQIL~dL---------GV~kirLLTn--np~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 294 FGPDERRYGSAVAMLRGL---------GITRVRLLTN--NPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred CCccceeeeHHHHHHHHc---------CCCeEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 355788888886555443 9999987654 66667777888888887653
No 223
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.66 E-value=1.3e+02 Score=17.94 Aligned_cols=25 Identities=4% Similarity=-0.044 Sum_probs=16.9
Q ss_pred EEEEEeccCCHhhHHHHHH-cCCeEEE
Q 047585 133 RLEAVVDVENVASQRVLEK-AGFKREG 158 (185)
Q Consensus 133 ~i~~~~~~~N~~a~~~y~~-~GF~~~~ 158 (185)
.+.+.|. +=.+|++||++ +||+...
T Consensus 4 Hi~l~v~-dl~~s~~FY~~~lg~~~~~ 29 (125)
T cd07241 4 HVAIWTK-DLERMKAFYVTYFGATSNE 29 (125)
T ss_pred EEEEEec-CHHHHHHHHHHHhCCEeec
Confidence 4555544 23589999987 7998654
No 224
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.49 E-value=1.1e+02 Score=16.47 Aligned_cols=28 Identities=21% Similarity=0.069 Sum_probs=17.2
Q ss_pred ccEEEEEeccCCH-hhHHHHHHcCCeEEE
Q 047585 131 LERLEAVVDVENV-ASQRVLEKAGFKREG 158 (185)
Q Consensus 131 ~~~i~~~~~~~N~-~a~~~y~~~GF~~~~ 158 (185)
...+.+.+...+. ...+..++.||+..+
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 3335555544444 677778888887653
No 225
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=27.47 E-value=94 Score=18.88 Aligned_cols=28 Identities=18% Similarity=0.032 Sum_probs=18.5
Q ss_pred ccEEEEEeccCCHhhHHHHHH-cCCeEEEE
Q 047585 131 LERLEAVVDVENVASQRVLEK-AGFKREGV 159 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~ 159 (185)
+..+.+.|..- .+|.+||+. +||+....
T Consensus 3 l~~v~l~v~Dl-~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 3 LGYLGVESSDL-DAWRRFATDVLGLQVGDR 31 (120)
T ss_pred ccEEEEEeCCH-HHHHHHHHhccCceeccC
Confidence 44455555433 479999976 89987543
No 226
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=27.12 E-value=93 Score=22.04 Aligned_cols=35 Identities=3% Similarity=0.044 Sum_probs=29.5
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
|...|.-.|.+.+..++++|.+. |++.+.+++.+.
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~~~--gI~~lTvyaFS~ 55 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCLEL--GVKEVTLYAFST 55 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHc--CCCEEEEEeech
Confidence 55567778999999999999876 999999998754
No 227
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=27.08 E-value=62 Score=22.86 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeE
Q 047585 110 KGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKR 156 (185)
Q Consensus 110 ~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~ 156 (185)
+|+|.+..+.++-+++.. ..+.+. .-..++..++|+..
T Consensus 127 ~GIG~kTAd~iLlya~~r----p~fvVD-----ty~~Rv~~RlG~~~ 164 (218)
T PRK13913 127 KGIGKESADAILCYVCAK----EVMVVD-----KYSYLFLKKLGIEI 164 (218)
T ss_pred CCccHHHHHHHHHHHcCC----Cccccc-----hhHHHHHHHcCCCC
Confidence 799999999999998665 223222 23789999999964
No 228
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=27.02 E-value=28 Score=22.60 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=22.6
Q ss_pred CccEEEEEeccCCHhhHHHHHHcCCeEEEEEe
Q 047585 130 HLERLEAVVDVENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~~ 161 (185)
|+.-|...+.. -..+..+++++||+..++.+
T Consensus 9 G~dFvEFa~~~-~~~l~~~~~~lGF~~~a~hr 39 (139)
T PF14696_consen 9 GFDFVEFAVPD-AQALAQLFTALGFQPVARHR 39 (139)
T ss_dssp EEEEEEEE-SS-TTSCHHHHCCCCEEEECCEC
T ss_pred CeEEEEEecCC-HHHHHHHHHHhCcceEEecC
Confidence 56667776655 45677899999999998654
No 229
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=26.92 E-value=1.5e+02 Score=17.72 Aligned_cols=17 Identities=12% Similarity=-0.011 Sum_probs=13.3
Q ss_pred HhhHHHHH-HcCCeEEEE
Q 047585 143 VASQRVLE-KAGFKREGV 159 (185)
Q Consensus 143 ~~a~~~y~-~~GF~~~~~ 159 (185)
.+|.+||. .+||+....
T Consensus 13 ~~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 13 AETADFYVRHFGFTVVFD 30 (119)
T ss_pred HHHHHHHHHhhCcEEEec
Confidence 47899996 499987654
No 230
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.35 E-value=1e+02 Score=22.21 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=29.7
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
+...|.-.|.+.+..++++|.+. |++.+.+++.+.
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c~~l--gI~~vTvYaFS~ 63 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDASLEY--GLKNISLYAFST 63 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHc--CCCEEEEEEeeh
Confidence 55567788999999999999876 999999998764
No 231
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=26.18 E-value=27 Score=14.82 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=8.3
Q ss_pred eeeCCccCHHHHHHH
Q 047585 22 LRPLELSDIDDFMVW 36 (185)
Q Consensus 22 ir~~~~~D~~~l~~~ 36 (185)
+-|++++|+..+.++
T Consensus 7 mmPMSPddy~~l~~~ 21 (23)
T PF12162_consen 7 MMPMSPDDYDELERM 21 (23)
T ss_dssp ---S-HHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHh
Confidence 457888888877654
No 232
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=25.74 E-value=1.6e+02 Score=19.09 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=21.0
Q ss_pred CccEEEEEeccCCHhhHHHHHH-cCCeEEEE
Q 047585 130 HLERLEAVVDVENVASQRVLEK-AGFKREGV 159 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~ 159 (185)
++..+.+.|. +=.++++||+. +||.....
T Consensus 9 ~l~Hi~l~v~-Dl~~a~~FY~~~LGl~~~~~ 38 (154)
T cd07237 9 GLGHVVLATP-DPDEAHAFYRDVLGFRLSDE 38 (154)
T ss_pred ccCEEEEEeC-CHHHHHHHHHHccCCEEEEE
Confidence 5666777664 34688999976 99987553
No 233
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.28 E-value=92 Score=22.60 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=29.6
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
|...|.--|.+.+..++++|.+. |++.+.+++.+.
T Consensus 39 ~~~~GH~~G~~~l~~i~~~c~~~--gI~~lTvyaFS~ 73 (253)
T PRK14832 39 PRIAGHRQGARTLKELLRCCKDW--GIKALTAYAFST 73 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEEeeh
Confidence 55667778899999999999876 999999998754
No 234
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.24 E-value=1.7e+02 Score=20.01 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=46.6
Q ss_pred eeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEEE
Q 047585 97 AELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 97 ~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~~ 160 (185)
..+.+++..+--=+-+-+.++.++.+|+.+. .++++.+.+. |..+-...++-.|..+...
T Consensus 48 YgLtllvs~D~elk~f~~~ilsQ~~~WL~~~--kiqklvlvI~--~~~tgEvlErWqFnie~~~ 107 (203)
T KOG3285|consen 48 YGLTLLVSHDEELKTFIRNILSQVHEWLSKG--KIQKLVLVIT--SKHTGEVLERWQFNIETEN 107 (203)
T ss_pred cCceEEEecCHHHHHHHHHHHHHHHHHHHhC--CcceEEEEEE--ecccccchhheeeeeeeec
Confidence 4445556555555778899999999999988 8999988775 5667889999999877654
No 235
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=25.16 E-value=1.1e+02 Score=18.56 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=15.9
Q ss_pred CCHhhHHHHH-HcCCeEEEEE
Q 047585 141 ENVASQRVLE-KAGFKREGVL 160 (185)
Q Consensus 141 ~N~~a~~~y~-~~GF~~~~~~ 160 (185)
+=.+|++||+ .+||+.....
T Consensus 9 d~~~a~~FY~~~lG~~~~~~~ 29 (122)
T cd08355 9 DAAAAIDWLTDAFGFEERLVV 29 (122)
T ss_pred CHHHHHHHHHHhcCCEEEEEE
Confidence 3458999997 9999987654
No 236
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=25.09 E-value=1.6e+02 Score=20.60 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=16.3
Q ss_pred eccCCHhhHHHHHHcCCeEEEE
Q 047585 138 VDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 138 ~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
+...|..+.++|+.+|+...--
T Consensus 45 ~nv~N~~s~~~~~~~G~~~i~l 66 (233)
T PF01136_consen 45 LNVFNSESARFLKELGASRITL 66 (233)
T ss_pred ccCCCHHHHHHHHHcCCCEEEE
Confidence 4566888888888888876543
No 237
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=25.09 E-value=1.7e+02 Score=21.12 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeE
Q 047585 110 KGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKR 156 (185)
Q Consensus 110 ~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~ 156 (185)
-|.|+..+...+..+.... |.+-+.+.+++.|..... |..++-..
T Consensus 12 GGvGKSt~a~~la~~l~~~-g~~vl~iD~D~~n~~~~~-~~~l~~~~ 56 (241)
T PRK13886 12 GGVGKSFIAATIAQYKASK-GQKPLCIDTDPVNATFEG-YKALNVRR 56 (241)
T ss_pred CCCcHHHHHHHHHHHHHhC-CCCEEEEECCCCCchhhh-HHhcCCcc
Confidence 4888888777776666555 888888888888864443 34444433
No 238
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.61 E-value=1e+02 Score=22.34 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=29.1
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
+...|.-.|...+..++++|.+. |++.+.+++.+.
T Consensus 43 ~~~~GH~~G~~~l~~v~~~c~~~--GIk~lTvYaFS~ 77 (250)
T PRK14840 43 RAISGHYYGAKSLPQIVDTALHL--GIEVLTLFAFST 77 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEEeeh
Confidence 44556777899999999999876 999999998765
No 239
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.47 E-value=1.1e+02 Score=21.86 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=29.3
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
+...|.--|...+..++++|.+. |++.+.+++.+.
T Consensus 25 ~~~~GH~~G~~~l~~~~~~c~~~--gI~~lTvyaFS~ 59 (233)
T PRK14833 25 ARAAGHKKGVKTLREITIWCANH--KLECLTLYAFST 59 (233)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHc--CCCEEEEeecch
Confidence 44567778899999999999876 999999998754
No 240
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=24.45 E-value=1.1e+02 Score=17.44 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=16.8
Q ss_pred CCHhhHHHHHH-cCCeEEEEEe
Q 047585 141 ENVASQRVLEK-AGFKREGVLG 161 (185)
Q Consensus 141 ~N~~a~~~y~~-~GF~~~~~~~ 161 (185)
+-..+.+||.+ +||+......
T Consensus 8 d~~~~~~fy~~~lg~~~~~~~~ 29 (112)
T cd06587 8 DLEAAVAFYEEVLGFEVLFRNG 29 (112)
T ss_pred CHHHHHHHHHhccCCEEEEeec
Confidence 35689999998 9999877663
No 241
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.40 E-value=1.1e+02 Score=21.85 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=29.6
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
|...|.--|...+..++++|.+. |++.+.+++.+.
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~~~l--gIk~lTvYaFS~ 58 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWSLEL--GIKYLTAFSFST 58 (233)
T ss_pred chhhhHHHHHHHHHHHHHHHHHc--CCCEEEEEeeeH
Confidence 55567778899999999999876 999999998765
No 242
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=24.33 E-value=1.7e+02 Score=21.61 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhhCCCccEEEEEeccCC-----------HhhHHHHHHcCCeE
Q 047585 115 QAVKIVTKTIFDEWPHLERLEAVVDVEN-----------VASQRVLEKAGFKR 156 (185)
Q Consensus 115 ~l~~~~~~~~~~~~~~~~~i~~~~~~~N-----------~~a~~~y~~~GF~~ 156 (185)
.-+..+++|+++. |+. |.+.+.... ..+.+.|++.|-+=
T Consensus 73 ~dl~elv~Ya~~K--gVg-i~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~G 122 (273)
T PF10566_consen 73 FDLPELVDYAKEK--GVG-IWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKG 122 (273)
T ss_dssp --HHHHHHHHHHT--T-E-EEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEE
T ss_pred cCHHHHHHHHHHc--CCC-EEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCE
Confidence 4466777777666 655 444444443 55666777777643
No 243
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=24.11 E-value=1.7e+02 Score=17.56 Aligned_cols=34 Identities=9% Similarity=-0.037 Sum_probs=22.5
Q ss_pred ccEEEEEeccCCHhhHHHHHH-cCCeEEEEEeeEEE
Q 047585 131 LERLEAVVDVENVASQRVLEK-AGFKREGVLGKYFI 165 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~~~~~~~ 165 (185)
+..+.+.|..- .++.+||.. +||+..........
T Consensus 3 i~hi~l~v~d~-~~~~~Fy~~~lG~~~~~~~~~~~~ 37 (125)
T cd07255 3 IGAVTLRVADL-ERSLAFYQDVLGLEVLERTDSTAV 37 (125)
T ss_pred EEEEEEEECCH-HHHHHHHHhccCcEEEEcCCCEEE
Confidence 45566666433 578999986 89998776433333
No 244
>PRK11478 putative lyase; Provisional
Probab=23.76 E-value=1.1e+02 Score=18.62 Aligned_cols=28 Identities=11% Similarity=0.254 Sum_probs=18.5
Q ss_pred CccEEEEEeccCCHhhHHHHH-HcCCeEEE
Q 047585 130 HLERLEAVVDVENVASQRVLE-KAGFKREG 158 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~-~~GF~~~~ 158 (185)
++..+.+.|. +=.+|.+||. .+||+...
T Consensus 6 ~i~hv~l~v~-D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 6 QVHHIAIIAT-DYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred eecEEEEEcC-CHHHHHHHHHHHhCCEecc
Confidence 3455555553 3358899996 58999753
No 245
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=23.51 E-value=1.1e+02 Score=23.14 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=29.6
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
+...|.-.|.+.+..++++|.+. |++.+.+++.+.
T Consensus 40 ~~~~GH~~G~~~l~~il~~c~~l--GIk~lTlYAFSt 74 (322)
T PTZ00349 40 HSAIGHFMGSKALIQIIEICIKL--KIKILSVFSFSL 74 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEEeeh
Confidence 44558888999999999999876 999999998754
No 246
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.49 E-value=1e+02 Score=21.99 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=28.9
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
+...|.-.|...+..++++|.+. |++.+.+++.+.
T Consensus 14 ~~~~GH~~G~~~l~~i~~~c~~~--GI~~lT~yaFS~ 48 (229)
T PRK10240 14 IRAFGHKAGAKSVRRAVSFAANN--GIEALTLYAFSS 48 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEeeeh
Confidence 44557778889999999999876 999999998765
No 247
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=23.48 E-value=2.2e+02 Score=18.43 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhhCCCccEEEEEecc-----------CCHhhHHHHHHcCCeEEEEEe
Q 047585 113 ATQAVKIVTKTIFDEWPHLERLEAVVDV-----------ENVASQRVLEKAGFKREGVLG 161 (185)
Q Consensus 113 g~~l~~~~~~~~~~~~~~~~~i~~~~~~-----------~N~~a~~~y~~~GF~~~~~~~ 161 (185)
+..+.+.+.+.+.+. |++.+.+.+.- .-+.+++-+++.|++.....+
T Consensus 55 Aq~aae~~~~~~~~~--Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~D 112 (132)
T PRK09607 55 AMQAAEKAAEDAKEK--GITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIED 112 (132)
T ss_pred HHHHHHHHHHHHHHc--CCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEE
Confidence 345666677777654 99999998855 446899999999999866543
No 248
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=23.47 E-value=1e+02 Score=23.44 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=28.7
Q ss_pred ccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCC
Q 047585 108 WGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGF 154 (185)
Q Consensus 108 rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF 154 (185)
-|-|||.+++..+++.+... +-..+.+..... ......|++.|=
T Consensus 10 pGDGIGpEv~~~a~kVl~a~--~~~~~~~e~~~~-~~G~~~~~~~G~ 53 (348)
T COG0473 10 PGDGIGPEVMAAALKVLEAA--AEFGLDFEFEEA-EVGGEAYDKHGE 53 (348)
T ss_pred CCCCCCHHHHHHHHHHHHHh--hhcCCceEEEEe-hhhHHHHHHcCC
Confidence 37899999999999988654 222233333333 234778888883
No 249
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=23.47 E-value=89 Score=15.82 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHhcCCCCceEEEe-ECCeeEEEEEee
Q 047585 52 TNKEDGINYIKTKVPQHPWFRAIC-VNNRPVGATSVR 87 (185)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iG~~~~~ 87 (185)
.+..+....+.+. +...+.+. .+|+++|.+...
T Consensus 16 ~~l~~~~~~~~~~---~~~~~~V~d~~~~~~G~is~~ 49 (57)
T PF00571_consen 16 DSLEEALEIMRKN---GISRLPVVDEDGKLVGIISRS 49 (57)
T ss_dssp SBHHHHHHHHHHH---TSSEEEEESTTSBEEEEEEHH
T ss_pred CcHHHHHHHHHHc---CCcEEEEEecCCEEEEEEEHH
Confidence 4555666655543 23344444 489999998754
No 250
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=23.46 E-value=1.8e+02 Score=22.44 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=44.3
Q ss_pred eeeeEEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCe
Q 047585 97 AELGYVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFK 155 (185)
Q Consensus 97 ~~~~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~ 155 (185)
..+|+-|.++|=|.|.--.....+++.+.+. ++ .+-+.+...|.-...+..++|=.
T Consensus 81 Glmgv~vpeeyGGsG~df~~~~~v~EEisk~--d~-sv~~~v~v~ntL~~~~i~~fGte 136 (398)
T KOG0139|consen 81 GLMGVEVPEEYGGSGLDFFAAAIVIEEISKV--DA-SVGVIVDVQNTLYLPLIIQFGTE 136 (398)
T ss_pred CcceeecChhhCCCchhHHHHHHHHHHHhcc--Cc-cceeEEEecccccchHHHHhCcH
Confidence 4556778999999999998888888888664 33 78888888887777777777753
No 251
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.21 E-value=1.1e+02 Score=22.11 Aligned_cols=33 Identities=9% Similarity=-0.026 Sum_probs=28.6
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEec
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVD 139 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~ 139 (185)
+...|.--|...+..++++|.+. |++.+.+++.
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c~~~--gI~~vTvYaF 67 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGAIEA--GVPYLSLYTF 67 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHc--CCCEEEEeee
Confidence 45567778899999999999876 9999999998
No 252
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.20 E-value=1.3e+02 Score=21.76 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=28.5
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
+...|.-.|...+..++++|.+. |++.+.+++.+.
T Consensus 35 ~~~~GH~~G~~~l~~i~~~c~~l--gI~~lTvYaFS~ 69 (249)
T PRK14834 35 PRAAGHRAGVEALRRVVRAAGEL--GIGYLTLFAFSS 69 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHc--CCCEEEEEEEec
Confidence 44456677889999999999876 999999999655
No 253
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.19 E-value=2.2e+02 Score=20.69 Aligned_cols=32 Identities=19% Similarity=0.096 Sum_probs=26.8
Q ss_pred ccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 108 WGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 108 rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
.|.--|...+..+++||.+. |++.+.+++.+.
T Consensus 46 ~Gh~~G~~~l~~~l~~c~~~--GI~~vTvYaFS~ 77 (251)
T PRK14830 46 AGHKAGMDTVKKITKAASEL--GVKVLTLYAFST 77 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHc--CCCEEEEEEEeh
Confidence 46667888999999999876 999999988654
No 254
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=23.13 E-value=1.9e+02 Score=18.43 Aligned_cols=29 Identities=17% Similarity=-0.062 Sum_probs=20.3
Q ss_pred CccEEEEEeccCCHhhHHHHHH-cCCeEEEE
Q 047585 130 HLERLEAVVDVENVASQRVLEK-AGFKREGV 159 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~ 159 (185)
.+..+.+.|..- .+|++||+. +||+....
T Consensus 17 ~i~hv~l~v~Dl-~~a~~FY~~vLG~~~~~~ 46 (150)
T TIGR00068 17 RLLHTMLRVGDL-DKSLDFYTEVLGMKLLRK 46 (150)
T ss_pred eEEEEEEEecCH-HHHHHHHHHhcCCEEEEE
Confidence 556666665533 589999974 99987554
No 255
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=23.02 E-value=1.8e+02 Score=17.31 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=21.7
Q ss_pred ccEEEEEeccCCHhhHHHHHH-cCCeEEEEEe
Q 047585 131 LERLEAVVDVENVASQRVLEK-AGFKREGVLG 161 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~~~ 161 (185)
++.+.+.|..- .++++||++ +||+......
T Consensus 2 l~Hi~i~v~d~-~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 2 LDHIAIRVKDL-EKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEESCH-HHHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEEcCCH-HHHHHHHHHHhCCcEEeeec
Confidence 34566655543 589999986 9999888765
No 256
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=22.83 E-value=1.6e+02 Score=19.22 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=19.3
Q ss_pred CccEEEEEeccCCHhhHHHHHH-cCCeEEE
Q 047585 130 HLERLEAVVDVENVASQRVLEK-AGFKREG 158 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~-~GF~~~~ 158 (185)
++..+.+.|.. =.+|++||+. +||+...
T Consensus 3 ~l~Hv~l~V~D-l~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 3 RLDHFNLRVPD-VDAGLAYYRDELGFRVSE 31 (161)
T ss_pred eEEEEEEecCC-HHHHHHHHHhccCCEEEE
Confidence 34556665543 3689999987 9998754
No 257
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=22.78 E-value=90 Score=18.80 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=14.1
Q ss_pred CHhhHHHHHH-cCCeEEEE
Q 047585 142 NVASQRVLEK-AGFKREGV 159 (185)
Q Consensus 142 N~~a~~~y~~-~GF~~~~~ 159 (185)
=.+|++||++ +||+....
T Consensus 10 l~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 10 LEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred HHHHHHHHHHhcCCEEeec
Confidence 3589999985 89988654
No 258
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.52 E-value=1.7e+02 Score=17.43 Aligned_cols=17 Identities=18% Similarity=0.036 Sum_probs=13.7
Q ss_pred CHhhHHHHH-HcCCeEEE
Q 047585 142 NVASQRVLE-KAGFKREG 158 (185)
Q Consensus 142 N~~a~~~y~-~~GF~~~~ 158 (185)
-..+++||+ -+||+...
T Consensus 11 ~~~s~~Fy~~~lG~~~~~ 28 (122)
T cd08354 11 LEAAEAFYEDVLGLELML 28 (122)
T ss_pred HHHHHHHHHhccCCEEee
Confidence 358999997 58999876
No 259
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=22.29 E-value=1.6e+02 Score=17.41 Aligned_cols=30 Identities=13% Similarity=-0.002 Sum_probs=21.1
Q ss_pred ccEEEEEeccCCHhhHHHHHH-cCCeEEEEEe
Q 047585 131 LERLEAVVDVENVASQRVLEK-AGFKREGVLG 161 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~~~ 161 (185)
+..+.+.|.. =.+|++||.. +||+......
T Consensus 3 l~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 3 IHHVTLAVPD-LEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred eEEEEEeeCC-HhHhHHHHHhhcCCeeeeecc
Confidence 4455555544 3689999987 9999877543
No 260
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=22.26 E-value=1.1e+02 Score=18.49 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=18.3
Q ss_pred EEEEEeccCCHhhHHHHHH-cCCeEEEE
Q 047585 133 RLEAVVDVENVASQRVLEK-AGFKREGV 159 (185)
Q Consensus 133 ~i~~~~~~~N~~a~~~y~~-~GF~~~~~ 159 (185)
.+.+.|. +=.++.+||++ +||.....
T Consensus 3 hv~l~v~-d~~~~~~fy~~~lG~~~~~~ 29 (128)
T cd07249 3 HIGIAVP-DLEAAIKFYRDVLGVGPWEE 29 (128)
T ss_pred EEEEEeC-CHHHHHHHHHHhhCCCCccc
Confidence 4555553 33589999987 99988654
No 261
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.22 E-value=1.6e+02 Score=17.79 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=17.3
Q ss_pred EEEEeccCCHhhHHHHHH----cCCeEEEEE
Q 047585 134 LEAVVDVENVASQRVLEK----AGFKREGVL 160 (185)
Q Consensus 134 i~~~~~~~N~~a~~~y~~----~GF~~~~~~ 160 (185)
+.+.| .+=.+|++||++ +||......
T Consensus 4 v~l~v-~d~~~s~~FY~~~f~~lg~~~~~~~ 33 (123)
T cd07262 4 VTLGV-NDLERARAFYDAVLAPLGIKRVMED 33 (123)
T ss_pred EEEec-CcHHHHHHHHHHHHhhcCceEEeec
Confidence 44444 233488999998 599886654
No 262
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=21.96 E-value=1.4e+02 Score=20.59 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=9.4
Q ss_pred ECCeeEEEEEeeeCC
Q 047585 76 VNNRPVGATSVRPNS 90 (185)
Q Consensus 76 ~~~~~iG~~~~~~~~ 90 (185)
.+|+++|+..+....
T Consensus 170 ~ng~~vGVg~a~~~~ 184 (202)
T COG5270 170 ENGRVVGVGIAKKSY 184 (202)
T ss_pred cCCEEEEEEEEecCH
Confidence 377777776665543
No 263
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=21.84 E-value=2.4e+02 Score=18.33 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEE
Q 047585 114 TQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREG 158 (185)
Q Consensus 114 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~ 158 (185)
..-+..+++++++. | +.+.+--++.+..++.++-||....
T Consensus 22 ~~~~r~ml~~ak~~--g---~~~pvc~D~~A~~k~lkr~gv~~~e 61 (142)
T PF11633_consen 22 SWNFRAMLQHAKET--G---LLCPVCIDYPAFCKTLKRKGVDPKE 61 (142)
T ss_dssp ---CHHHHHHHHHH--T----EEEEETT-HHHHHHHHHTTS---S
T ss_pred ehhHHHHHHHHHhc--C---cEEEEEeccHHHHHHHhccCccccc
Confidence 33456777777766 5 5666778899999999998887654
No 264
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=21.78 E-value=2.2e+02 Score=17.86 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhCCCccEEEEEecc-----------CCHhhHHHHHHcCCeEEEEE
Q 047585 113 ATQAVKIVTKTIFDEWPHLERLEAVVDV-----------ENVASQRVLEKAGFKREGVL 160 (185)
Q Consensus 113 g~~l~~~~~~~~~~~~~~~~~i~~~~~~-----------~N~~a~~~y~~~GF~~~~~~ 160 (185)
+..+.+.+.+.+.+. |++.+.+.+.- ..+.+++-+++.|++.....
T Consensus 48 Aq~aa~~~~~~~~~~--Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~ 104 (114)
T TIGR03628 48 AMQAAGRAAEKAKER--GITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIE 104 (114)
T ss_pred HHHHHHHHHHHHHHc--CCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 345667777777664 99999998854 45789999999999986654
No 265
>PRK06724 hypothetical protein; Provisional
Probab=21.70 E-value=2.2e+02 Score=17.83 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=20.4
Q ss_pred CccEEEEEeccCCHhhHHHHHH----cCCeEE
Q 047585 130 HLERLEAVVDVENVASQRVLEK----AGFKRE 157 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~----~GF~~~ 157 (185)
+++.+.+.|..- .+|++||++ +||+..
T Consensus 7 ~i~Hv~l~V~Dl-e~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 7 GIHHIEFWVANL-EESISFYDMLFSIIGWRKL 37 (128)
T ss_pred ccCEEEEEeCCH-HHHHHHHHHHHhhCCcEEe
Confidence 677788877543 589999997 688865
No 266
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=21.68 E-value=2e+02 Score=17.33 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=21.0
Q ss_pred CccEEEEEeccCCHhhHHHHHH-cCCeEEEEEe
Q 047585 130 HLERLEAVVDVENVASQRVLEK-AGFKREGVLG 161 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~~~ 161 (185)
++..+.+.|.. =.+|.+||+. +||+......
T Consensus 6 ~i~hv~l~v~d-l~~a~~FY~~~lG~~~~~~~~ 37 (121)
T cd09013 6 HLAHVELLTPK-PEESLWFFTDVLGLEETGREG 37 (121)
T ss_pred EeeEEEEEeCC-HHHHHHHHHhCcCCEEEeecC
Confidence 45556665542 3689999987 6998876543
No 267
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=21.61 E-value=1.9e+02 Score=19.31 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhCCCccEEEEEe----ccCCHhhHHHHHHcCCeEEEE
Q 047585 117 VKIVTKTIFDEWPHLERLEAVV----DVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~~~----~~~N~~a~~~y~~~GF~~~~~ 159 (185)
++.+++++++. |+++|-+.. ...-..-.++++..||.....
T Consensus 43 veEiieFak~m--gykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV 87 (157)
T PF08901_consen 43 VEEIIEFAKRM--GYKKIGIAFCIGLRKEARILAKILEANGFEVYSV 87 (157)
T ss_pred HHHHHHHHHHc--CCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEE
Confidence 57788888776 888876543 122234456778999987664
No 268
>PF13592 HTH_33: Winged helix-turn helix
Probab=21.57 E-value=1.4e+02 Score=15.87 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=21.0
Q ss_pred HHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 119 IVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
.+.+++.+.+ |+.. +-....+++.++||.....
T Consensus 9 ~i~~~I~~~f-gv~y-------s~~~v~~lL~r~G~s~~kp 41 (60)
T PF13592_consen 9 EIAAYIEEEF-GVKY-------SPSGVYRLLKRLGFSYQKP 41 (60)
T ss_pred HHHHHHHHHH-CCEE-------cHHHHHHHHHHcCCccccC
Confidence 3444455555 6441 2345788999999987654
No 269
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=21.29 E-value=1.4e+02 Score=18.97 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=16.7
Q ss_pred hhHHHHHH-cCCeEEEEEeeEEEECC
Q 047585 144 ASQRVLEK-AGFKREGVLGKYFIMKG 168 (185)
Q Consensus 144 ~a~~~y~~-~GF~~~~~~~~~~~~~g 168 (185)
..+.||++ +||+...+......+++
T Consensus 13 ~ni~FY~~~LGfkll~EEna~a~lg~ 38 (125)
T PF14506_consen 13 LNIDFYQKTLGFKLLSEENALAILGD 38 (125)
T ss_dssp HHHHHHTTTT--EEEEEETTEEEEE-
T ss_pred HhHHHHHhccCcEEeeccccEEEecC
Confidence 67899996 99999887766555543
No 270
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.17 E-value=1.3e+02 Score=21.61 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=29.4
Q ss_pred cccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 105 SKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
+...|.-.|...+..++++|.+. |++.+.+++.+.
T Consensus 30 ~~~~GH~~G~~~l~~i~~~c~~~--GI~~lTvYaFS~ 64 (239)
T PRK14839 30 PRLAGHRAGVEAIRRVVEAAPDL--GIGTLTLYAFSS 64 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEEech
Confidence 45567778889999999999876 999999998764
No 271
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=21.13 E-value=3.6e+02 Score=20.70 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=34.1
Q ss_pred EEECcccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccCCH-hhHHHHHHcCCeEEEEEeeEE
Q 047585 101 YVLASKYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVENV-ASQRVLEKAGFKREGVLGKYF 164 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~-~a~~~y~~~GF~~~~~~~~~~ 164 (185)
++++|-+ .|+...+++.+.+ . -.-+++.|.+..- +-.+.+.+ ||+......-..
T Consensus 292 v~lDPPR--~G~~~~~l~~l~~-~------~~ivyvSC~p~tlarDl~~L~~-gY~l~~v~~~Dm 346 (362)
T PRK05031 292 IFVDPPR--AGLDDETLKLVQA-Y------ERILYISCNPETLCENLETLSQ-THKVERFALFDQ 346 (362)
T ss_pred EEECCCC--CCCcHHHHHHHHc-c------CCEEEEEeCHHHHHHHHHHHcC-CcEEEEEEEccc
Confidence 5688884 6888888888865 1 1247888877432 12445544 998877655333
No 272
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=21.02 E-value=2.5e+02 Score=18.20 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhhCCCccEEEEEeccCCHhhHHHHHHcCCeEEEE
Q 047585 112 IATQAVKIVTKTIFDEWPHLERLEAVVDVENVASQRVLEKAGFKREGV 159 (185)
Q Consensus 112 ~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~N~~a~~~y~~~GF~~~~~ 159 (185)
+|+.+...+.. - |++.+++.+.+ .+|.+++++.|=...-.
T Consensus 55 vGKAAA~lmv~----g--gv~~vyA~viS--~~Al~~L~~~gI~v~y~ 94 (134)
T PF08973_consen 55 VGKAAAALMVL----G--GVKEVYADVIS--EPALDLLEEAGIKVSYD 94 (134)
T ss_dssp E-HHHHHHHHH----H----SEEEEEEEE--HHHHHHHHHTT--EEEE
T ss_pred HhHHHHHHHHH----h--cHHHHHHHHHh--HHHHHHHHHcCCceeHh
Confidence 45444444433 2 89999999885 58999999999876543
No 273
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=20.63 E-value=2.1e+02 Score=17.76 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=19.4
Q ss_pred ccEEEEEeccCCHhhHHHHHH-cCCeEEEEE
Q 047585 131 LERLEAVVDVENVASQRVLEK-AGFKREGVL 160 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~~-~GF~~~~~~ 160 (185)
+..+.+.|. +=.+|++||++ +||+.....
T Consensus 4 l~hi~l~v~-dl~~s~~FY~~vlGl~~~~~~ 33 (134)
T cd08360 4 LGHVVLFVP-DVEAAEAFYRDRLGFRVSDRF 33 (134)
T ss_pred eeEEEEEcC-CHHHHHHHHHHhcCCEEEEEe
Confidence 445556554 23589999966 899876553
No 274
>PLN02367 lactoylglutathione lyase
Probab=20.59 E-value=2.8e+02 Score=19.95 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=17.4
Q ss_pred EEEEeccCCHhhHHHHHH-cCCeEEEEE
Q 047585 134 LEAVVDVENVASQRVLEK-AGFKREGVL 160 (185)
Q Consensus 134 i~~~~~~~N~~a~~~y~~-~GF~~~~~~ 160 (185)
..+.|. +=.+|++||++ +||+...+.
T Consensus 79 tmlRVk-Dle~Sl~FYt~vLGm~ll~r~ 105 (233)
T PLN02367 79 TMYRIK-DPKASLDFYSRVLGMSLLKRL 105 (233)
T ss_pred EEEEeC-CHHHHHHHHHHhcCCEEeEEE
Confidence 444443 22479999965 999987754
No 275
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.43 E-value=1.3e+02 Score=22.22 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=27.7
Q ss_pred ccccccHHHHHHHHHHHHHhhhCCCccEEEEEeccC
Q 047585 106 KYWGKGIATQAVKIVTKTIFDEWPHLERLEAVVDVE 141 (185)
Q Consensus 106 ~~rg~G~g~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (185)
...|.-.|...+..++++|.+. |++.+.+++.+.
T Consensus 63 ~~~GH~~G~~~l~~i~~~c~~l--GIk~lTvYaFS~ 96 (275)
T PRK14835 63 REMGHEFGVQKAYEVLEWCLEL--GIPTVTIWVFST 96 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEEEEc
Confidence 3456667889999999999876 999999988754
No 276
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=20.07 E-value=88 Score=14.14 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=7.6
Q ss_pred ccHHHHHHHHHHH
Q 047585 110 KGIATQAVKIVTK 122 (185)
Q Consensus 110 ~G~g~~l~~~~~~ 122 (185)
.|+|......++.
T Consensus 17 pGIG~~tA~~I~~ 29 (30)
T PF00633_consen 17 PGIGPKTANAILS 29 (30)
T ss_dssp TT-SHHHHHHHHH
T ss_pred CCcCHHHHHHHHh
Confidence 4677766666654
Done!