BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047586
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 1/148 (0%)
Query: 32 IEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKNDTQ 91
I ++C T + C++ L+SDPR+ D +GL Q SID++++ +TS ++ASL T
Sbjct: 6 ISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQATD 65
Query: 92 SALMKSRYSACLMQYGRSLNDMEYANECLKIKYLRGIYMAILSSKVAAGACTREFETPPA 151
L K RY C Y +++ + A + L + + ++ AG C FE PP
Sbjct: 66 PKL-KGRYETCSENYADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEGPPN 124
Query: 152 DKSGLIERNRKLRIYGQIIVLASVLMPS 179
+ L + + KL I+++ S L+P
Sbjct: 125 IPTQLHQADLKLEDLCDIVLVISNLLPG 152
>pdb|1RJ1|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco
pdb|1RJ4|A Chain A, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|B Chain B, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|C Chain C, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|D Chain D, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
Length = 151
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 27 VSENDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLA 86
+ N +E CKNT + Q C+K L SD R+ D L I +D ++ + + ++ L
Sbjct: 3 MGNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKL- 61
Query: 87 KNDTQSALMKSRYSACLMQY 106
++ A K C Y
Sbjct: 62 RHSNPPAAWKGPLKNCAFSY 81
>pdb|2XQR|B Chain B, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|D Chain D, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|F Chain F, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|H Chain H, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|J Chain J, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|L Chain L, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 149
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 28 SENDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAK 87
+ N +E CKNT + Q C+K L SD R+ D L I +D ++ + + ++ L +
Sbjct: 2 ANNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKL-R 60
Query: 88 NDTQSALMKSRYSACLMQY 106
+ A K C Y
Sbjct: 61 HSNPPAAWKGPLKNCAFSY 79
>pdb|2CJ4|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco At Ph 4.6
pdb|2CJ4|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco At Ph 4.6
pdb|2CJ5|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 5.0)
pdb|2CJ6|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 7.5)
pdb|2CJ7|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (ph 9.0)
pdb|2CJ8|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 9.5)
pdb|2CJ8|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 9.5)
Length = 150
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 30 NDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKND 89
N +E CKNT + Q C+K L SD R+ D L I +D ++ + + ++ L ++
Sbjct: 5 NLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKL-RHS 63
Query: 90 TQSALMKSRYSACLMQY 106
A K C Y
Sbjct: 64 NPPAAWKGPLKNCAFSY 80
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 15/119 (12%)
Query: 45 CVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKNDTQSALMKSRYSACLM 104
C+ KS P PK +F LT++ + +++ + A+ + +D ++ ++ +S+
Sbjct: 137 CLTASKSAPSIPKENFSCLTRLDHNRAKAQI----ALKLGVTSDDVKNVIIWGNHSST-- 190
Query: 105 QYGRSLNDMEYANECLKIKYLRGIYMAILSSKVAAGACTREFETPPADKSGLIERNRKL 163
QY D+ +A L+ K + G+Y A+ G EF T + + + RKL
Sbjct: 191 QY----PDVNHAKVKLQAKEV-GVYEAVKDDSWLKG----EFITTVQQRGAAVIKARKL 240
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 15/119 (12%)
Query: 45 CVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKNDTQSALMKSRYSACLM 104
C+ KS P PK +F LT++ + +++ + A+ + +D ++ ++ +S+
Sbjct: 136 CLTASKSAPSIPKENFSCLTRLDHNRAKAQI----ALKLGVTSDDVKNVIIWGNHSST-- 189
Query: 105 QYGRSLNDMEYANECLKIKYLRGIYMAILSSKVAAGACTREFETPPADKSGLIERNRKL 163
QY D+ +A L+ K + G+Y A+ G EF T + + + RKL
Sbjct: 190 QY----PDVNHAKVKLQAKEV-GVYEAVKDDSWLKG----EFITTVQQRGAAVIKARKL 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,294,215
Number of Sequences: 62578
Number of extensions: 136428
Number of successful extensions: 340
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 8
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)