Query 047586
Match_columns 179
No_of_seqs 118 out of 871
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 12:33:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01614 PME_inhib pectineste 100.0 9.5E-32 2.1E-36 203.4 19.3 148 26-177 26-177 (178)
2 smart00856 PMEI Plant invertas 100.0 6.6E-30 1.4E-34 187.6 15.4 142 28-173 3-148 (148)
3 PF04043 PMEI: Plant invertase 100.0 5.6E-28 1.2E-32 177.8 15.8 142 28-173 3-152 (152)
4 PLN02484 probable pectinestera 99.9 5.6E-26 1.2E-30 197.6 17.2 146 29-178 73-227 (587)
5 PLN02468 putative pectinestera 99.9 9.8E-26 2.1E-30 195.5 17.8 145 29-178 64-217 (565)
6 PLN02314 pectinesterase 99.9 1.3E-25 2.7E-30 195.7 17.1 146 29-178 70-234 (586)
7 PLN02995 Probable pectinestera 99.9 1.9E-24 4E-29 186.5 17.9 144 30-178 35-191 (539)
8 PLN02313 Pectinesterase/pectin 99.9 5.9E-24 1.3E-28 185.2 17.5 146 29-178 59-220 (587)
9 PLN02301 pectinesterase/pectin 99.9 8.1E-24 1.8E-28 182.5 17.7 155 18-178 36-201 (548)
10 PLN02217 probable pectinestera 99.9 1E-23 2.2E-28 184.7 16.2 143 30-177 54-207 (670)
11 PLN02990 Probable pectinestera 99.9 3.9E-23 8.4E-28 179.5 16.9 144 29-178 53-210 (572)
12 PLN02416 probable pectinestera 99.9 5.8E-23 1.2E-27 177.4 17.5 147 27-177 36-191 (541)
13 PLN02708 Probable pectinestera 99.9 5.8E-23 1.3E-27 177.9 17.6 144 29-177 44-195 (553)
14 PLN02506 putative pectinestera 99.9 7.6E-23 1.6E-27 176.4 17.1 148 27-178 32-192 (537)
15 PLN02745 Putative pectinestera 99.9 3.3E-22 7.2E-27 174.2 17.7 142 30-178 80-232 (596)
16 PLN02713 Probable pectinestera 99.9 1.7E-22 3.8E-27 175.2 15.4 141 29-176 32-188 (566)
17 PLN02197 pectinesterase 99.9 3.5E-22 7.7E-27 173.5 16.7 142 29-178 38-191 (588)
18 PLN02698 Probable pectinestera 99.9 2.1E-21 4.6E-26 166.4 15.1 143 28-178 21-177 (497)
19 PLN03043 Probable pectinestera 99.8 3.2E-20 6.9E-25 160.5 14.0 139 33-176 3-156 (538)
20 PLN02201 probable pectinestera 99.8 1.5E-17 3.2E-22 143.0 15.3 148 6-177 3-163 (520)
21 PLN02933 Probable pectinestera 99.7 3E-16 6.4E-21 135.0 13.7 118 57-178 48-182 (530)
22 PLN02488 probable pectinestera 99.6 2.9E-15 6.3E-20 127.7 12.1 140 34-178 3-160 (509)
23 PLN02170 probable pectinestera 99.4 5.8E-12 1.3E-16 108.5 11.6 122 39-178 57-185 (529)
24 PLN02916 pectinesterase family 99.1 4.3E-10 9.3E-15 96.6 8.7 81 90-177 57-140 (502)
25 PF07870 DUF1657: Protein of u 83.3 7.3 0.00016 23.0 6.6 44 70-114 4-47 (50)
26 KOG4841 Dolichol-phosphate man 69.4 4.5 9.8E-05 26.8 2.2 25 99-123 67-91 (95)
27 KOG3470 Beta-tubulin folding c 64.8 43 0.00094 23.0 7.4 54 69-122 23-79 (107)
28 PF08285 DPM3: Dolichol-phosph 63.9 4.6 0.0001 27.1 1.5 26 99-124 63-88 (91)
29 PF10510 PIG-S: Phosphatidylin 56.8 53 0.0011 29.1 7.3 84 59-149 389-472 (517)
30 PF09680 Tiny_TM_bacill: Prote 45.5 23 0.0005 17.6 1.8 9 3-11 6-14 (24)
31 TIGR01732 tiny_TM_bacill conse 42.5 28 0.0006 17.6 1.9 9 3-11 8-16 (26)
32 KOG1733 Mitochondrial import i 42.5 1E+02 0.0023 20.7 7.3 59 59-118 17-85 (97)
33 KOG2459 GPI transamidase compl 38.9 1.8E+02 0.0039 25.9 7.5 43 103-148 447-489 (536)
34 PF02203 TarH: Tar ligand bind 33.2 1.8E+02 0.0039 20.7 8.9 60 68-128 84-145 (171)
35 PF12755 Vac14_Fab1_bd: Vacuol 28.2 1.9E+02 0.0041 19.4 7.8 54 60-118 7-64 (97)
36 PRK00753 psbL photosystem II r 25.9 65 0.0014 17.8 1.8 14 5-18 15-28 (39)
37 PF02419 PsbL: PsbL protein; 25.8 69 0.0015 17.6 1.9 13 6-18 14-26 (37)
38 PF02953 zf-Tim10_DDP: Tim10/D 25.7 1.6E+02 0.0035 17.8 4.7 28 90-118 37-64 (66)
39 CHL00038 psbL photosystem II p 25.3 77 0.0017 17.4 2.0 14 5-18 14-27 (38)
40 PF02561 FliS: Flagellar prote 24.7 2.4E+02 0.0052 19.4 7.0 26 102-127 22-47 (122)
41 COG1516 FliS Flagellin-specifi 23.7 2.2E+02 0.0047 20.5 4.7 29 100-128 22-50 (132)
42 PF06692 MNSV_P7B: Melon necro 23.2 66 0.0014 19.5 1.6 8 7-14 14-21 (61)
43 PF10669 Phage_Gp23: Protein g 21.6 76 0.0016 21.6 1.9 7 111-117 99-105 (121)
44 COG4383 Mu-like prophage prote 21.1 1.7E+02 0.0036 25.3 4.2 65 59-133 440-504 (517)
45 cd02337 ZZ_CBP Zinc finger, ZZ 21.0 52 0.0011 18.4 0.9 19 33-51 13-31 (41)
46 PF08287 DASH_Spc19: Spc19; I 20.9 1.6E+02 0.0034 21.7 3.6 26 99-124 2-27 (153)
47 PF10717 ODV-E18: Occlusion-de 20.8 1.1E+02 0.0024 20.2 2.4 20 6-25 30-49 (85)
48 PF00770 Peptidase_C5: Adenovi 20.8 56 0.0012 24.7 1.2 10 2-11 102-111 (183)
49 PF03943 TAP_C: TAP C-terminal 20.7 91 0.002 18.3 1.9 23 30-52 2-25 (51)
50 PF07304 SRA1: Steroid recepto 20.4 2.5E+02 0.0054 20.6 4.6 40 102-144 83-126 (157)
No 1
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=100.00 E-value=9.5e-32 Score=203.40 Aligned_cols=148 Identities=27% Similarity=0.418 Sum_probs=138.9
Q ss_pred cCChhHHHHHhhcCCCcccHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 047586 26 NVSENDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKNDTQSALMKSRYSACLMQ 105 (179)
Q Consensus 26 ~~~~~~i~~~C~~t~~~~~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~aL~~C~~~ 105 (179)
.++...|+.+|++|+||++|+++|+++|++..+|+++|+.++++.+..+++.+..++.++.++.+++. .+.+|++|.++
T Consensus 26 ~~~~~~i~~~C~~t~~~~~C~~~L~~~~~~~~ad~~~la~~ai~~a~~~~~~~~~~i~~l~~~~~~~~-~~~al~~C~~~ 104 (178)
T TIGR01614 26 NATQSLIKRICKKTEYPNFCISTLKSDPSSAKADLQGLANISVSAALSNASDTLDHISKLLLTKGDPR-DKSALEDCVEL 104 (178)
T ss_pred cchHHHHHHHHcCCCChHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHHHHHH
Confidence 46778999999999999999999999999988899999999999999999999999999987767888 99999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchHHH---HHHHHhchhchhhhhhhcCCCC-CCCCchHHHHHHHHHHHHHHHHHHhcC
Q 047586 106 YGRSLNDMEYANECLKIKYLRGI---YMAILSSKVAAGACTREFETPP-ADKSGLIERNRKLRIYGQIIVLASVLM 177 (179)
Q Consensus 106 y~~a~~~l~~A~~~l~~~~~~~~---lsaa~t~~~~~~tC~d~f~~~~-~~~~~l~~~~~~~~~l~s~alai~~~l 177 (179)
|+++++.|+++.++++.++|+++ +++|+++ +++|+|+|++.+ ..++|+..+++++.+|++|+++|++++
T Consensus 105 y~~a~~~L~~a~~~l~~~~~~d~~~~ls~a~~~---~~tC~d~f~~~~~~~~~~l~~~~~~~~~l~s~alai~~~~ 177 (178)
T TIGR01614 105 YSDAVDALDKALASLKSKDYSDAETWLSSALTD---PSTCEDGFEELGGIVKSPLTKRNNNVKKLSSITLAIIKML 177 (178)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc---cchHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887 9999999 999999998654 368999999999999999999999876
No 2
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor. This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex PUBMED:8521860. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein PUBMED:8521860. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical PUBMED:10880981.
Probab=99.97 E-value=6.6e-30 Score=187.62 Aligned_cols=142 Identities=28% Similarity=0.410 Sum_probs=133.1
Q ss_pred ChhHHHHHhhcCCCcccHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 047586 28 SENDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKNDTQSALMKSRYSACLMQYG 107 (179)
Q Consensus 28 ~~~~i~~~C~~t~~~~~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~aL~~C~~~y~ 107 (179)
+.+.|+.+|++|+||++|+++|.++|+++.+|+++|+.++++.+..++..+..+++++.++.+++. .+.+|++|.++|+
T Consensus 3 ~~~~i~~~C~~T~~~~~C~~~L~~~~~~~~~d~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~~~~~-~~~al~~C~~~y~ 81 (148)
T smart00856 3 TSKLIDSICKSTDYPDFCVSSLSSDPSSSATDPKDLAKIAIKVALSQATKTLSFISSLLKKTKDPR-LKAALKDCLELYD 81 (148)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHH
Confidence 567899999999999999999999999888899999999999999999999999999987778999 9999999999999
Q ss_pred HHHHHHHHHHHHHHhcchHHH---HHHHHhchhchhhhhhhcCCC-CCCCCchHHHHHHHHHHHHHHHHH
Q 047586 108 RSLNDMEYANECLKIKYLRGI---YMAILSSKVAAGACTREFETP-PADKSGLIERNRKLRIYGQIIVLA 173 (179)
Q Consensus 108 ~a~~~l~~A~~~l~~~~~~~~---lsaa~t~~~~~~tC~d~f~~~-~~~~~~l~~~~~~~~~l~s~alai 173 (179)
.++++|++++.+++.++|+++ +++|+++ +++|+|+|.+. +..++||..+++++.+|++|+|+|
T Consensus 82 ~a~~~L~~a~~~l~~~~~~d~~~~lsaa~t~---~~tC~d~f~~~~~~~~~~l~~~~~~~~~l~s~aLai 148 (148)
T smart00856 82 DAVDSLEKALEELKSGDYDDVATWLSAALTD---QDTCLDGFEENDDKVKSPLTKRNDNLEKLTSNALAI 148 (148)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHhcC---cchHHhHhccCCcchhHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999988887 9999999 99999999763 347899999999999999999986
No 3
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues. This domain inhibits pectinesterase/pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex []. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein []. This domain is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical in structure [].; GO: 0004857 enzyme inhibitor activity, 0030599 pectinesterase activity; PDB: 1X90_A 1X8Z_C 1X91_A 1XG2_B 1RJ4_D 2CJ4_B 2XQR_F 2CJ7_A 2CJ8_A 2CJ6_A ....
Probab=99.96 E-value=5.6e-28 Score=177.76 Aligned_cols=142 Identities=26% Similarity=0.390 Sum_probs=126.2
Q ss_pred ChhHHHHHhhcCCCcc-cHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCChHHHHHHHHHHHHH
Q 047586 28 SENDIEDLCKNTIDAQ-FCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKN-DTQSALMKSRYSACLMQ 105 (179)
Q Consensus 28 ~~~~i~~~C~~t~~~~-~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~-~~~~~~~k~aL~~C~~~ 105 (179)
+...|+.+|++|+||. +|.++|+++|..+..|+++|+.++++.+..++..+..++.++.++ .++|. .+.+|++|.++
T Consensus 3 ~~~~I~~~C~~T~~~~~~C~~~L~~~~~~~~~d~~~l~~~av~~a~~~~~~a~~~~~~l~~~~~~~~~-~~~~l~~C~~~ 81 (152)
T PF04043_consen 3 TSSLIQDICKSTPYPYNLCLSTLSSDPSSSAADPKELARIAVQAALSNATSASAFISKLLKNPSKDPN-AKQALQDCQEL 81 (152)
T ss_dssp -HHHHHHHHCTSS--HHHHHHHHHTCCCGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-S-THH-HHHHHHHHHHH
T ss_pred hHHHHHHHhhCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHH-hhHHHHHHHHH
Confidence 5689999999999666 999999999887778999999999999999999999999999876 78999 99999999999
Q ss_pred HHHHHHHHHHHHHHH--HhcchHHH---HHHHHhchhchhhhhhhcC-CCCCCCCchHHHHHHHHHHHHHHHHH
Q 047586 106 YGRSLNDMEYANECL--KIKYLRGI---YMAILSSKVAAGACTREFE-TPPADKSGLIERNRKLRIYGQIIVLA 173 (179)
Q Consensus 106 y~~a~~~l~~A~~~l--~~~~~~~~---lsaa~t~~~~~~tC~d~f~-~~~~~~~~l~~~~~~~~~l~s~alai 173 (179)
|+.++++|+++++.+ ..++|+++ +++++++ +++|+|+|+ ..++.++||..+++++.+|++|+|+|
T Consensus 82 y~~a~~~l~~a~~~l~~~~~~~~~~~~~lsaa~~~---~~tC~~~f~~~~~~~~~~l~~~~~~~~~l~s~aLai 152 (152)
T PF04043_consen 82 YDDAVDSLQRALEALNSKNGDYDDARTWLSAALTN---QDTCEDGFEEAGSPVKSPLVQRNDNVEKLSSNALAI 152 (152)
T ss_dssp HHHHHHHHHHHHHHH--HHT-HHHHHHHHHHHHHH---HHHHHHHC-TTSSS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH---HHHHHHHhcccCCCccchHHHHHHHHHHHHHHHhhC
Confidence 999999999999999 99999887 9999999 999999994 44458899999999999999999987
No 4
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=99.94 E-value=5.6e-26 Score=197.60 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=127.9
Q ss_pred hhHHHHHhhcCCCcccHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHH
Q 047586 29 ENDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKNDTQSALMKSRYSACLMQYGR 108 (179)
Q Consensus 29 ~~~i~~~C~~t~~~~~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~aL~~C~~~y~~ 108 (179)
+..|+.+|+.|+||++|+++|.+.|.+..+++++|++++++.++.++.++......+.....+++ .+.||+||.|+|++
T Consensus 73 ~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~slnvtl~~~~~a~~~s~~l~~~~~~~r-~k~AL~DClELldd 151 (587)
T PLN02484 73 TQAISKTCSKTRFPNLCVDSLLDFPGSLTASESDLIHISFNMTLQHFSKALYLSSTISYVQMPPR-VRSAYDSCLELLDD 151 (587)
T ss_pred hHHHHHhccCCCChHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHH-HHHHHHHHHHHHHH
Confidence 45899999999999999999999998888899999999999999999988776665544457788 99999999999999
Q ss_pred HHHHHHHHHHHHHhc----chHHH---HHHHHhchhchhhhhhhcCCCC--CCCCchHHHHHHHHHHHHHHHHHHhcCC
Q 047586 109 SLNDMEYANECLKIK----YLRGI---YMAILSSKVAAGACTREFETPP--ADKSGLIERNRKLRIYGQIIVLASVLMP 178 (179)
Q Consensus 109 a~~~l~~A~~~l~~~----~~~~~---lsaa~t~~~~~~tC~d~f~~~~--~~~~~l~~~~~~~~~l~s~alai~~~l~ 178 (179)
++++|++++.+++.. .++++ ||+|+++ ++||+|||++.+ .++++|...+.++.+|++|+|+|++.+.
T Consensus 152 Aid~L~~Sl~~l~~~~~~~~~~DvkTWLSAALTn---q~TClDGF~e~~~~~vk~~m~~~l~~l~~LtSNALAIi~~~~ 227 (587)
T PLN02484 152 SVDALSRALSSVVPSSGGGSPQDVVTWLSAALTN---HDTCTEGFDGVNGGEVKDQMTGALKDLSELVSNCLAIFSASN 227 (587)
T ss_pred HHHHHHHHHHHHhccccccchHHHHhHHHHHhcc---HhhHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999998752 24444 9999999 999999997542 3788999999999999999999998764
No 5
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=99.94 E-value=9.8e-26 Score=195.52 Aligned_cols=145 Identities=10% Similarity=0.121 Sum_probs=128.1
Q ss_pred hhHHHHHhhcCCCcccHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhc--CCChHHHHHHHHHHHHHH
Q 047586 29 ENDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKN--DTQSALMKSRYSACLMQY 106 (179)
Q Consensus 29 ~~~i~~~C~~t~~~~~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~--~~~~~~~k~aL~~C~~~y 106 (179)
+..|+..|..|+||++|+++|.+.|.+..+|+++|++++++.++.++..+...+.++... ..+++ .+.||+||.|+|
T Consensus 64 ~~~Ik~~C~~T~Yp~lC~sSLs~~~~s~~~~p~~L~~~al~vti~~~~~a~~~~s~l~~~~~~~d~~-~k~AL~DC~ELl 142 (565)
T PLN02468 64 STSVKAVCDVTLYKDSCYETLAPAPKASQLQPEELFKYAVKVAINELSKASQAFSNSEGFLGVKDNM-TNAALNACQELL 142 (565)
T ss_pred hHHHHHhccCCCChHHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCChH-HHHHHHHHHHHH
Confidence 358999999999999999999999988778999999999999999999999888877532 46788 999999999999
Q ss_pred HHHHHHHHHHHHHHHh----cchHHH---HHHHHhchhchhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCC
Q 047586 107 GRSLNDMEYANECLKI----KYLRGI---YMAILSSKVAAGACTREFETPPADKSGLIERNRKLRIYGQIIVLASVLMP 178 (179)
Q Consensus 107 ~~a~~~l~~A~~~l~~----~~~~~~---lsaa~t~~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~s~alai~~~l~ 178 (179)
++++++|++++.+++. ..++++ ||+|+++ ++||.|||++. +.+++|.....++.+|++|+|+|++.+.
T Consensus 143 ddaid~L~~Sl~~l~~~~~~~~~dDl~TWLSAAlTn---q~TClDGF~e~-~vk~~~~~~l~n~~eLtSNaLAIi~~l~ 217 (565)
T PLN02468 143 DLAIDNLNNSLTSSGGVSVLDNVDDLRTWLSSAGTY---QETCIDGLAEP-NLKSFGENHLKNSTELTSNSLAIITWIG 217 (565)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcc---hhhhhhhhccc-CchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999998873 223444 9999999 99999999764 4788999999999999999999998753
No 6
>PLN02314 pectinesterase
Probab=99.94 E-value=1.3e-25 Score=195.71 Aligned_cols=146 Identities=11% Similarity=0.210 Sum_probs=126.0
Q ss_pred hhHHHHHhhcCCCcccHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHH
Q 047586 29 ENDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKNDTQSALMKSRYSACLMQYGR 108 (179)
Q Consensus 29 ~~~i~~~C~~t~~~~~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~aL~~C~~~y~~ 108 (179)
...|+..|+.|+||++|+++|.+.|.+..+|+++|++++++.++.++..+...++++.+...+++ .+.||+||.|+|++
T Consensus 70 ~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~al~vti~~a~~a~~~~~~L~~~~~~~~-~k~AL~DC~Elldd 148 (586)
T PLN02314 70 ATSLKAVCSVTRYPESCISSISSLPTSNTTDPETLFKLSLKVAIDELSKLSDLPQKLINETNDER-LKSALRVCETLFDD 148 (586)
T ss_pred HHHHHHhccCCCChHHHHHHHhcccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHHH
Confidence 45899999999999999999999998888899999999999999999999999998876667888 99999999999999
Q ss_pred HHHHHHHHHHHHHhc---------chHHH---HHHHHhchhchhhhhhhcCCCC-------CCCCchHHHHHHHHHHHHH
Q 047586 109 SLNDMEYANECLKIK---------YLRGI---YMAILSSKVAAGACTREFETPP-------ADKSGLIERNRKLRIYGQI 169 (179)
Q Consensus 109 a~~~l~~A~~~l~~~---------~~~~~---lsaa~t~~~~~~tC~d~f~~~~-------~~~~~l~~~~~~~~~l~s~ 169 (179)
++++|++++.+++.+ .++++ ||+|+++ ++||+|||++.. ..+..+.....++.+|++|
T Consensus 149 Aid~L~~Sl~~l~~~~~~~~~~~~~~~Dv~TWLSAALT~---q~TClDGF~e~~~~k~~~s~vk~~~~~~l~n~~eLtSN 225 (586)
T PLN02314 149 AIDRLNDSISSMQVGEGEKILSSSKIDDLKTWLSATITD---QETCIDALQELSQNKYANSTLTNEVKTAMSNSTEFTSN 225 (586)
T ss_pred HHHHHHHHHHHHhhcccccccccccHHHHHhHHHHHhcC---HhHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 999999999988532 23444 9999999 999999996432 1233355556899999999
Q ss_pred HHHHHhcCC
Q 047586 170 IVLASVLMP 178 (179)
Q Consensus 170 alai~~~l~ 178 (179)
+|+|++.+.
T Consensus 226 aLAIi~~l~ 234 (586)
T PLN02314 226 SLAIVSKIL 234 (586)
T ss_pred HHHHHhhhc
Confidence 999998764
No 7
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=99.93 E-value=1.9e-24 Score=186.54 Aligned_cols=144 Identities=13% Similarity=0.145 Sum_probs=120.9
Q ss_pred hHHHHHhhcCCCcccHHHhhhcCCCCCCC-CHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHH
Q 047586 30 NDIEDLCKNTIDAQFCVKVLKSDPRTPKA-DFEGLTQISIDLSRSFVLETSAMLASLAKNDTQSALMKSRYSACLMQYGR 108 (179)
Q Consensus 30 ~~i~~~C~~t~~~~~C~~~L~s~p~s~~a-d~~~L~~iai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~aL~~C~~~y~~ 108 (179)
..|+..|..|.||++|+++|.+.|.+... +++++++++++.+..++.++...+..+.++..+++ .+.|++||.|+|++
T Consensus 35 ~~Irs~C~~T~YP~lC~sSLs~~~~s~s~~~~~~l~~~~~~aAl~~a~sa~~~i~~l~~~~~~~r-~~~AL~DC~ELl~D 113 (539)
T PLN02995 35 TDIDGWCDKTPYPDPCKCYFKNHNGFRQPTQISEFRVMLVEAAMDRAISARDELTNSGKNCTDFK-KQAVLADCIDLYGD 113 (539)
T ss_pred HHHHhhcCCCCChHHHHHHHhhccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHH-HHHHHHHHHHHHHH
Confidence 47999999999999999999998886554 89999999999999999999999998866557888 99999999999999
Q ss_pred HHHHHHHHHHHHHhc-------chHHH---HHHHHhchhchhhhhhhcCCCCCCCCchHHH--HHHHHHHHHHHHHHHhc
Q 047586 109 SLNDMEYANECLKIK-------YLRGI---YMAILSSKVAAGACTREFETPPADKSGLIER--NRKLRIYGQIIVLASVL 176 (179)
Q Consensus 109 a~~~l~~A~~~l~~~-------~~~~~---lsaa~t~~~~~~tC~d~f~~~~~~~~~l~~~--~~~~~~l~s~alai~~~ 176 (179)
++++|++++++++.. .++++ ||+|+++ ++||.|||++.+ .+..+... +.++.+|++|+|+|++.
T Consensus 114 AvD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALT~---q~TC~DGF~~~~-~~~~v~~~v~~~~~~~ltSNaLAi~~~ 189 (539)
T PLN02995 114 TIMQLNRTLQGVSPKAGAAKRCTDFDAQTWLSTALTN---TETCRRGSSDLN-VSDFITPIVSNTKISHLISNCLAVNGA 189 (539)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHhcc---hhhhhhhhcccc-chhhhhhhhhhhhHHHHHHHHHHHhhh
Confidence 999999999988633 22344 9999999 999999997542 22223222 36799999999999987
Q ss_pred CC
Q 047586 177 MP 178 (179)
Q Consensus 177 l~ 178 (179)
+.
T Consensus 190 l~ 191 (539)
T PLN02995 190 LL 191 (539)
T ss_pred hc
Confidence 63
No 8
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=99.92 E-value=5.9e-24 Score=185.18 Aligned_cols=146 Identities=12% Similarity=0.204 Sum_probs=127.1
Q ss_pred hhHHHHHhhcCCCcccHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhc--CCChHHHHHHHHHHHHHH
Q 047586 29 ENDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKN--DTQSALMKSRYSACLMQY 106 (179)
Q Consensus 29 ~~~i~~~C~~t~~~~~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~--~~~~~~~k~aL~~C~~~y 106 (179)
+..|+..|+.|+||++|+++|.+.|.+...++++|++++++.++.++..+...++.+.+. ..+++ .+.||+||.|+|
T Consensus 59 ~~~Iks~C~~T~YP~~C~ssLs~~~~~~~~~~~~Li~~sL~vtl~~a~~a~~~vs~L~~~~~~l~~r-~k~AL~DClELl 137 (587)
T PLN02313 59 HAVLKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPR-EVTALHDCLETI 137 (587)
T ss_pred hHHHHHhccCCCChHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHH-HHHHHHHHHHHH
Confidence 458999999999999999999998877777999999999999999999999999988653 46788 999999999999
Q ss_pred HHHHHHHHHHHHHHHhc--------chHHH---HHHHHhchhchhhhhhhcCCC---CCCCCchHHHHHHHHHHHHHHHH
Q 047586 107 GRSLNDMEYANECLKIK--------YLRGI---YMAILSSKVAAGACTREFETP---PADKSGLIERNRKLRIYGQIIVL 172 (179)
Q Consensus 107 ~~a~~~l~~A~~~l~~~--------~~~~~---lsaa~t~~~~~~tC~d~f~~~---~~~~~~l~~~~~~~~~l~s~ala 172 (179)
++++++|++++.+++.. .++++ ||+|+|+ ++||.|||++. ..++++|.....++.+|++|+|+
T Consensus 138 ddavD~L~~Sl~~l~~~~~~~~~~~~~dDlqTWLSAALTn---q~TClDGF~~~~~~~~vk~~m~~~l~n~teLtSNALA 214 (587)
T PLN02313 138 DETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITN---QGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALA 214 (587)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHhcc---hhhHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988731 12444 9999999 99999999632 12577888889999999999999
Q ss_pred HHhcCC
Q 047586 173 ASVLMP 178 (179)
Q Consensus 173 i~~~l~ 178 (179)
|++.+.
T Consensus 215 Iv~~~~ 220 (587)
T PLN02313 215 MIKNMT 220 (587)
T ss_pred HHhccc
Confidence 998753
No 9
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=99.92 E-value=8.1e-24 Score=182.54 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=132.5
Q ss_pred Hhcccccc---cCChhHHHHHhhcCCCcccHHHhhhcCCCC--CCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCh
Q 047586 18 PAISPSSV---NVSENDIEDLCKNTIDAQFCVKVLKSDPRT--PKADFEGLTQISIDLSRSFVLETSAMLASLAKNDTQS 92 (179)
Q Consensus 18 l~~~~~~~---~~~~~~i~~~C~~t~~~~~C~~~L~s~p~s--~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~~~~~ 92 (179)
|+..|..+ ..+.+.|+..|+.|+||++|+++|...+.. ...++++|++.+++.+..++..+...++.+..+..++
T Consensus 36 ~~~~~~~~~~~~~~~~~Iks~C~~T~YP~~C~ssLs~~a~~~~~~~~p~~L~~aaL~vsl~~a~~a~~~vs~l~~~~~~~ 115 (548)
T PLN02301 36 LFTAPLISTNSSSPPSLLQTLCDRAHDQDSCQAMVSEIATNTVMKLNRVDLLQVLLKESTPHLQNTIEMASEIRIRINDP 115 (548)
T ss_pred HHhhhhhhcCCCCchHHHHHHhcCCCChHHHHHHHhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 55556544 245678999999999999999999987754 2338999999999999999999999999986666788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---chHHH---HHHHHhchhchhhhhhhcCCCCCCCCchHHHHHHHHHH
Q 047586 93 ALMKSRYSACLMQYGRSLNDMEYANECLKIK---YLRGI---YMAILSSKVAAGACTREFETPPADKSGLIERNRKLRIY 166 (179)
Q Consensus 93 ~~~k~aL~~C~~~y~~a~~~l~~A~~~l~~~---~~~~~---lsaa~t~~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l 166 (179)
+ .+.||+||.|+|++++++|++++++++.. +++++ ||+|+++ ++||.|||++. .+++|....+++.+|
T Consensus 116 ~-~~aAL~DC~ELl~davd~L~~Sl~~l~~~~~~~~~Dv~TWLSAALT~---q~TC~DGF~~~--~~~~~~~~l~n~~qL 189 (548)
T PLN02301 116 R-DKAALADCVELMDLSKDRIKDSVEALGNVTSKSHADAHTWLSSVLTN---HVTCLDGINGP--SRQSMKPGLKDLISR 189 (548)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhcc---hhhHHhhhhhh--hhhhHHHHHHHHHHH
Confidence 8 99999999999999999999999888642 34555 9999999 99999999754 357899999999999
Q ss_pred HHHHHHHHhcCC
Q 047586 167 GQIIVLASVLMP 178 (179)
Q Consensus 167 ~s~alai~~~l~ 178 (179)
++|+|+|++.+.
T Consensus 190 ~SNsLAiv~~l~ 201 (548)
T PLN02301 190 ARTSLAILVSVS 201 (548)
T ss_pred HHHHHHhhcccc
Confidence 999999998763
No 10
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=99.91 E-value=1e-23 Score=184.71 Aligned_cols=143 Identities=14% Similarity=0.148 Sum_probs=123.8
Q ss_pred hHHHHHhhcCCCcccHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHH
Q 047586 30 NDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKNDTQSALMKSRYSACLMQYGRS 109 (179)
Q Consensus 30 ~~i~~~C~~t~~~~~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~aL~~C~~~y~~a 109 (179)
+.|+..|+.|+||++|+++|.+.| ....++++|++.+++.++.++..+...+..+.+...+++ .+.|++||.|+|+++
T Consensus 54 ~~Ikt~C~sT~YP~lC~sSLs~~~-~~~~~p~dLi~aaL~vTl~a~~~a~~~~s~L~~~~~~~r-~k~AL~DClELlddA 131 (670)
T PLN02217 54 KAIKDVCAPTDYKETCEDTLRKDA-KNTSDPLELVKTAFNATMKQISDVAKKSQTMIELQKDPR-TKMALDQCKELMDYA 131 (670)
T ss_pred HHHHHHhcCCCCcHHHHHHhhhhc-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHH
Confidence 489999999999999999999988 445599999999999999999999999888865457888 999999999999999
Q ss_pred HHHHHHHHHHHHhc----------chHHHHHHHHhchhchhhhhhhcCCCC-CCCCchHHHHHHHHHHHHHHHHHHhcC
Q 047586 110 LNDMEYANECLKIK----------YLRGIYMAILSSKVAAGACTREFETPP-ADKSGLIERNRKLRIYGQIIVLASVLM 177 (179)
Q Consensus 110 ~~~l~~A~~~l~~~----------~~~~~lsaa~t~~~~~~tC~d~f~~~~-~~~~~l~~~~~~~~~l~s~alai~~~l 177 (179)
+++|++++.+++.. |...+||+|+|+ ++||.|||++.. .++..|.....++.+|++|+|+|++.+
T Consensus 132 vDeL~~Sl~~L~~~~~~~~~~~~dDvqTWLSAALTn---QdTClDGF~~~~~~vk~~m~~~l~nvseLtSNALAmv~~l 207 (670)
T PLN02217 132 IGELSKSFEELGKFEFHKVDEALIKLRIWLSATISH---EQTCLDGFQGTQGNAGETIKKALKTAVQLTHNGLAMVSEM 207 (670)
T ss_pred HHHHHHHHHHHhhccccccccchhHHHHHHHHHHhc---hhHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999998731 233349999999 999999997432 255667788899999999999999865
No 11
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=99.91 E-value=3.9e-23 Score=179.45 Aligned_cols=144 Identities=11% Similarity=0.148 Sum_probs=121.4
Q ss_pred hhHHHHHhhcCCCcccHHHhhhc-CCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhh--cCCChHHHHHHHHHHHHH
Q 047586 29 ENDIEDLCKNTIDAQFCVKVLKS-DPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAK--NDTQSALMKSRYSACLMQ 105 (179)
Q Consensus 29 ~~~i~~~C~~t~~~~~C~~~L~s-~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~--~~~~~~~~k~aL~~C~~~ 105 (179)
+..|+..|+.|+||++|+++|.+ .|. ..++++|++.+++.++..+..+...+..+.. ...+++ .+.|++||.|+
T Consensus 53 ~~~Ik~~C~~T~YP~lC~ssLs~a~~~--~~~p~~Li~aal~vtl~~~~~a~~~~~~l~~~~~~~~~r-~k~Al~DC~EL 129 (572)
T PLN02990 53 TKAVEAVCAPTDYKETCVNSLMKASPD--STQPLDLIKLGFNVTIRSINDSIKKASGELKAKAANDPE-TKGALELCEKL 129 (572)
T ss_pred hHHHHHhhcCCCCcHHHHHHhhhcccc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHH-HHHHHHHHHHH
Confidence 35799999999999999999997 443 4589999999999999999999988877753 257888 99999999999
Q ss_pred HHHHHHHHHHHHHHHHhcc-------hHHH---HHHHHhchhchhhhhhhcCCCC-CCCCchHHHHHHHHHHHHHHHHHH
Q 047586 106 YGRSLNDMEYANECLKIKY-------LRGI---YMAILSSKVAAGACTREFETPP-ADKSGLIERNRKLRIYGQIIVLAS 174 (179)
Q Consensus 106 y~~a~~~l~~A~~~l~~~~-------~~~~---lsaa~t~~~~~~tC~d~f~~~~-~~~~~l~~~~~~~~~l~s~alai~ 174 (179)
|++++++|++++++++..+ ++++ ||+|+|+ ++||.|||++.+ ..+..+.....++.+|++|+|+|+
T Consensus 130 lddAvdeL~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTn---q~TClDGF~e~~s~lk~~~~~~l~nv~~LtSNALAiv 206 (572)
T PLN02990 130 MNDATDDLKKCLDNFDGFSIDQIEDFVEDLRVWLSGSIAY---QQTCMDTFEEIKSNLSQDMLKIFKTSRELTSNGLAMI 206 (572)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHhcc---HhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987321 3344 9999999 999999997432 255667777788999999999999
Q ss_pred hcCC
Q 047586 175 VLMP 178 (179)
Q Consensus 175 ~~l~ 178 (179)
+.+.
T Consensus 207 ~~~~ 210 (572)
T PLN02990 207 TNIS 210 (572)
T ss_pred hhhh
Confidence 8753
No 12
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=99.91 E-value=5.8e-23 Score=177.39 Aligned_cols=147 Identities=10% Similarity=0.099 Sum_probs=123.4
Q ss_pred CChhHHHHHhhcCCCcccHHHhhhcCCCCC-CCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCChHHHHHHHHHHHH
Q 047586 27 VSENDIEDLCKNTIDAQFCVKVLKSDPRTP-KADFEGLTQISIDLSRSFVLETSAMLASLAKN-DTQSALMKSRYSACLM 104 (179)
Q Consensus 27 ~~~~~i~~~C~~t~~~~~C~~~L~s~p~s~-~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~-~~~~~~~k~aL~~C~~ 104 (179)
++.+.|+.+|+.|+||++|+++|.++|... +.++..++..+++.+...+..+...++.+... ..+++ .+.||+||.|
T Consensus 36 ~~~~~Iks~C~~T~YP~lC~~sLss~~~~~~s~~~~~ll~~sL~~A~~~~~~~s~l~s~~~~~~~~~~~-~k~AL~DC~E 114 (541)
T PLN02416 36 PHLSSLTSFCKSTPYPDACFDSLKLSISINISPNILNFLLQTLQTAISEAGKLTNLLSGAGQSSNIIEK-QRGTIQDCKE 114 (541)
T ss_pred hHHHHHHHhcCCCCChHHHHHHHhhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHH-HHHHHHHHHH
Confidence 445689999999999999999999987543 33788899999999999988888777766332 34678 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcc---hHHH---HHHHHhchhchhhhhhhcCCCC-CCCCchHHHHHHHHHHHHHHHHHHhcC
Q 047586 105 QYGRSLNDMEYANECLKIKY---LRGI---YMAILSSKVAAGACTREFETPP-ADKSGLIERNRKLRIYGQIIVLASVLM 177 (179)
Q Consensus 105 ~y~~a~~~l~~A~~~l~~~~---~~~~---lsaa~t~~~~~~tC~d~f~~~~-~~~~~l~~~~~~~~~l~s~alai~~~l 177 (179)
+|++++++|++++.+++.++ ++++ ||+|+++ ++||.|||++.+ ..++++.....++.++++|+|+|++.+
T Consensus 115 l~~dAvD~L~~Sl~~L~~~~~~~~~DvqTWLSAALT~---q~TC~DGF~~~~~~~~~~i~~~~~~v~qltSNALAlv~~~ 191 (541)
T PLN02416 115 LHQITVSSLKRSVSRIQAGDSRKLADARAYLSAALTN---KNTCLEGLDSASGPLKPKLVNSFTSTYKHVSNSLSMLPKS 191 (541)
T ss_pred HHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHhcc---hhhHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999997632 2334 9999999 999999997543 367889999999999999999999865
No 13
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=99.91 E-value=5.8e-23 Score=177.91 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=121.4
Q ss_pred hhHHHHHhhcCCCcccHHHhhhcCCCC-CCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CChHHHHHHHHHHHHHH
Q 047586 29 ENDIEDLCKNTIDAQFCVKVLKSDPRT-PKADFEGLTQISIDLSRSFVLETSAMLASLAKND-TQSALMKSRYSACLMQY 106 (179)
Q Consensus 29 ~~~i~~~C~~t~~~~~C~~~L~s~p~s-~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~~-~~~~~~k~aL~~C~~~y 106 (179)
...|+..|+.|+||++|+++|.++|+. ...++++|++.+++.++.++..+...++.+.+.. .+.. .+.|++||.|+|
T Consensus 44 ~~~I~s~C~~T~YP~lC~sSLs~~~~~~~~~~p~~Li~aAL~vsl~~a~~a~~~v~~L~~~~~~~~~-~~~AL~DC~ELl 122 (553)
T PLN02708 44 PPQILLACNATRFPDTCVSSLSNAGRVPPDPKPIQIIQSAISVSRENLKTAQSMVKSILDSSAGNVN-RTTAATNCLEVL 122 (553)
T ss_pred cHHHHHhccCCCCcHHHHHHHhhccCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCch-HHHHHHHHHHHH
Confidence 467999999999999999999998853 4448999999999999999999999999887542 3455 569999999999
Q ss_pred HHHHHHHHHHHHHHHhcchHHH---HHHHHhchhchhhhhhhcCCCC--C-CCCchHHHHHHHHHHHHHHHHHHhcC
Q 047586 107 GRSLNDMEYANECLKIKYLRGI---YMAILSSKVAAGACTREFETPP--A-DKSGLIERNRKLRIYGQIIVLASVLM 177 (179)
Q Consensus 107 ~~a~~~l~~A~~~l~~~~~~~~---lsaa~t~~~~~~tC~d~f~~~~--~-~~~~l~~~~~~~~~l~s~alai~~~l 177 (179)
++++++|++++.++....++++ ||+|+++ ++||.|||++.. + .+..+ ...+++.+|++|+|+|++.+
T Consensus 123 ddavd~L~~Sl~~L~~~~~~DvqTWLSAALTn---q~TClDGF~~~~~~~~v~~~~-~~L~nvs~LtSNSLAmv~~~ 195 (553)
T PLN02708 123 SNSEHRISSTDIALPRGKIKDARAWMSAALLY---QYDCWSALKYVNDTSQVNDTM-SFLDSLIGLTSNALSMMASY 195 (553)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHhcc---HhHHHHHhhccCccchHHHHH-HHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999876666666 9999999 999999997442 1 23334 56788999999999999864
No 14
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=99.90 E-value=7.6e-23 Score=176.36 Aligned_cols=148 Identities=9% Similarity=0.073 Sum_probs=125.5
Q ss_pred CChhHHHHHhhcCCCcccHHHhhhcCCC-CCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 047586 27 VSENDIEDLCKNTIDAQFCVKVLKSDPR-TPKADFEGLTQISIDLSRSFVLETSAMLASLAKNDTQSALMKSRYSACLMQ 105 (179)
Q Consensus 27 ~~~~~i~~~C~~t~~~~~C~~~L~s~p~-s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~aL~~C~~~ 105 (179)
.....|+..|+.|+||++|+++|.+... +...|+++|++.+++++..++..+...+..+.+...+++ .+.+++||.|+
T Consensus 32 ~~~~~I~s~C~~T~YP~~C~ssLs~~~~~~~~~~p~~L~~aAL~vtl~~a~~a~~~v~~l~~~~~~~r-~~~Al~DC~El 110 (537)
T PLN02506 32 NFQALIAQACQFVENHSSCVSNIQAELKKSGPRTPHSVLSAALKATLDEARLAIDMITKFNALSISYR-EQVAIEDCKEL 110 (537)
T ss_pred hHHHHHHHHccCCCCcHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH-HHHHHHHHHHH
Confidence 4556899999999999999999997543 334589999999999999999999999998866567888 99999999999
Q ss_pred HHHHHHHHHHHHHHHHhc----c----hHHH---HHHHHhchhchhhhhhhcCCCC-CCCCchHHHHHHHHHHHHHHHHH
Q 047586 106 YGRSLNDMEYANECLKIK----Y----LRGI---YMAILSSKVAAGACTREFETPP-ADKSGLIERNRKLRIYGQIIVLA 173 (179)
Q Consensus 106 y~~a~~~l~~A~~~l~~~----~----~~~~---lsaa~t~~~~~~tC~d~f~~~~-~~~~~l~~~~~~~~~l~s~alai 173 (179)
|++++++|+.++.+++.. . .+++ ||+|+++ ++||.|||++.. ..+..+.....++.+|+||+|+|
T Consensus 111 lddSvd~L~~Sl~el~~~~~~~~~~~~~~Dv~TWLSAALT~---q~TC~DGF~~~~~~~k~~v~~~l~nv~~LtSNALAi 187 (537)
T PLN02506 111 LDFSVSELAWSLLEMNKIRAGHDNVAYEGNLKAWLSAALSN---QDTCLEGFEGTDRHLENFIKGSLKQVTQLISNVLAM 187 (537)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhHHhHHHHHhcc---HhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888531 1 1344 9999999 999999997543 25566778889999999999999
Q ss_pred HhcCC
Q 047586 174 SVLMP 178 (179)
Q Consensus 174 ~~~l~ 178 (179)
++.+.
T Consensus 188 v~~l~ 192 (537)
T PLN02506 188 YTQLH 192 (537)
T ss_pred Hhhcc
Confidence 98653
No 15
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=99.89 E-value=3.3e-22 Score=174.20 Aligned_cols=142 Identities=14% Similarity=0.146 Sum_probs=123.7
Q ss_pred hHHHHHhhcCCCcccHHHhhhcCCC--CCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 047586 30 NDIEDLCKNTIDAQFCVKVLKSDPR--TPKADFEGLTQISIDLSRSFVLETSAMLASLAKNDTQSALMKSRYSACLMQYG 107 (179)
Q Consensus 30 ~~i~~~C~~t~~~~~C~~~L~s~p~--s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~aL~~C~~~y~ 107 (179)
+.|+..|..|+||++|+++|.+... ...+++++|++++++.+...+..+...+.++. ..+++ .+.|++||.|+|+
T Consensus 80 ~~Ik~~C~~T~YP~~C~sSLs~~~~~~~~~~~p~~Ll~aAL~vtl~~~~~a~~~~~~l~--~~~~r-~k~Al~DC~ELld 156 (596)
T PLN02745 80 KIIQTVCNATLYKQTCENTLKKGTEKDPSLAQPKDLLKSAIKAVNDDLDKVLKKVLSFK--FENPD-EKDAIEDCKLLVE 156 (596)
T ss_pred HHHHHhcCCCCChHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCHH-HHHHHHHHHHHHH
Confidence 6799999999999999999998643 23458999999999999999999988888774 36788 9999999999999
Q ss_pred HHHHHHHHHHHHHHh------cchHHH---HHHHHhchhchhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCC
Q 047586 108 RSLNDMEYANECLKI------KYLRGI---YMAILSSKVAAGACTREFETPPADKSGLIERNRKLRIYGQIIVLASVLMP 178 (179)
Q Consensus 108 ~a~~~l~~A~~~l~~------~~~~~~---lsaa~t~~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~s~alai~~~l~ 178 (179)
+++++|++++.+++. ..++++ ||+|+++ ++||.|||++. ..+++|.....++.+|++|+|+|++.+.
T Consensus 157 dAid~L~~Sl~~l~~~~~~~~~~~~Dv~TWLSAALT~---q~TClDGF~e~-~l~s~m~~~l~~~~eLtSNALAiv~~ls 232 (596)
T PLN02745 157 DAKEELKASISRINDEVNKLAKNVPDLNNWLSAVMSY---QETCIDGFPEG-KLKSEMEKTFKSSQELTSNSLAMVSSLT 232 (596)
T ss_pred HHHHHHHHHHHHHhhcccccccchHHHHHHHHHHhcc---HhHHHhhhccc-chHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999874 123344 9999999 99999999764 4788999999999999999999998764
No 16
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=99.89 E-value=1.7e-22 Score=175.22 Aligned_cols=141 Identities=14% Similarity=0.176 Sum_probs=119.1
Q ss_pred hhHHHHHhhcCCCcccHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhcC---CChHHHHHHHHHHHHH
Q 047586 29 ENDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKND---TQSALMKSRYSACLMQ 105 (179)
Q Consensus 29 ~~~i~~~C~~t~~~~~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~~---~~~~~~k~aL~~C~~~ 105 (179)
...+...|+.|+||++|+++|++ ....|+++|++++++.++.++..+...++.+.+.. .+++ .+.||+||.|+
T Consensus 32 ~~~~~s~C~~T~YP~~C~ssLs~---s~~~d~~~l~~aaL~~tl~~a~~a~~~vs~L~~~~~~~~~~r-~k~AL~DC~EL 107 (566)
T PLN02713 32 PVSPSTICNTTPDPSFCKSVLPH---NQPGNVYDYGRFSVRKSLSQSRKFLSLVDRYLKRNSTLLSKS-AIRALEDCQFL 107 (566)
T ss_pred CCCCccccCCCCChHHHHHHhcc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHH-HHHHHHHHHHH
Confidence 34678899999999999999975 23458999999999999999999999999887543 3888 99999999999
Q ss_pred HHHHHHHHHHHHHHHHhc-------chHHH---HHHHHhchhchhhhhhhcCCCC---CCCCchHHHHHHHHHHHHHHHH
Q 047586 106 YGRSLNDMEYANECLKIK-------YLRGI---YMAILSSKVAAGACTREFETPP---ADKSGLIERNRKLRIYGQIIVL 172 (179)
Q Consensus 106 y~~a~~~l~~A~~~l~~~-------~~~~~---lsaa~t~~~~~~tC~d~f~~~~---~~~~~l~~~~~~~~~l~s~ala 172 (179)
|++++++|++++.+++.. .++++ ||+|+|+ ++||.|||++.+ ..+..|.....++.+|++|+|+
T Consensus 108 lddavD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTn---q~TClDGF~~~~~~~~~k~~v~~~l~nvt~LtSNaLA 184 (566)
T PLN02713 108 AGLNIDFLLSSFETVNSSSKTLSDPQADDVQTLLSAILTN---QQTCLDGLQAASSAWSVRNGLAVPLSNDTKLYSVSLA 184 (566)
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhcc---hhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998732 23444 9999999 999999997542 1344577778899999999999
Q ss_pred HHhc
Q 047586 173 ASVL 176 (179)
Q Consensus 173 i~~~ 176 (179)
|++.
T Consensus 185 lv~~ 188 (566)
T PLN02713 185 LFTK 188 (566)
T ss_pred Hhcc
Confidence 9986
No 17
>PLN02197 pectinesterase
Probab=99.89 E-value=3.5e-22 Score=173.46 Aligned_cols=142 Identities=14% Similarity=0.167 Sum_probs=122.2
Q ss_pred hhHHHHHhhcCCCcccHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhh---hcCCChHHHHHHHHHHHHH
Q 047586 29 ENDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLA---KNDTQSALMKSRYSACLMQ 105 (179)
Q Consensus 29 ~~~i~~~C~~t~~~~~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~---~~~~~~~~~k~aL~~C~~~ 105 (179)
.+.|+..|..|+||++|.++|++.| ..++++|++.+++.++.++..+...+..+. .+..+++ .+.|++||.|+
T Consensus 38 ~k~I~s~C~~T~YP~lC~ssLs~~~---s~~p~~L~~aaL~vtl~~~~~a~~~~s~l~~~~~~~~~~r-~k~Al~DC~eL 113 (588)
T PLN02197 38 MKAVQGICQSTSDKASCVKTLEPVK---SDDPNKLIKAFMLATKDAITKSSNFTGQTEGNMGSSISPN-NKAVLDYCKRV 113 (588)
T ss_pred HHHHHHhcCCCCChHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHH-HHHHHHHHHHH
Confidence 3489999999999999999999987 348999999999999999999999888663 2236788 99999999999
Q ss_pred HHHHHHHHHHHHHHHHh---c------chHHHHHHHHhchhchhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 047586 106 YGRSLNDMEYANECLKI---K------YLRGIYMAILSSKVAAGACTREFETPPADKSGLIERNRKLRIYGQIIVLASVL 176 (179)
Q Consensus 106 y~~a~~~l~~A~~~l~~---~------~~~~~lsaa~t~~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~s~alai~~~ 176 (179)
|++++++|++++.+++. . |...+||+|+|+ ++||.|||++. ..+..+.....++.+|++|+|+|++.
T Consensus 114 l~davd~L~~Sl~~l~~~~~~~~~~~~DvqTWLSAALTn---q~TClDGf~~~-~~k~~v~~~l~nv~~LtSNaLAiv~~ 189 (588)
T PLN02197 114 FMYALEDLSTIVEEMGEDLNQIGSKIDQLKQWLTGVYNY---QTDCLDDIEED-DLRKTIGEGIANSKILTSNAIDIFHS 189 (588)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHhC---hhhhhccccCc-chHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999872 1 233349999999 99999999764 35677888889999999999999987
Q ss_pred CC
Q 047586 177 MP 178 (179)
Q Consensus 177 l~ 178 (179)
++
T Consensus 190 ls 191 (588)
T PLN02197 190 VV 191 (588)
T ss_pred cc
Confidence 53
No 18
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=99.87 E-value=2.1e-21 Score=166.41 Aligned_cols=143 Identities=15% Similarity=0.101 Sum_probs=123.1
Q ss_pred ChhHHHHHhhcCCCcccHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhc-C--CChHHHHHHHHHHHH
Q 047586 28 SENDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKN-D--TQSALMKSRYSACLM 104 (179)
Q Consensus 28 ~~~~i~~~C~~t~~~~~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~-~--~~~~~~k~aL~~C~~ 104 (179)
....|+..|..|+||++|+++|++.|. ++++|++.+++.++.++..+...+.++... . .+++ .+.+++||.|
T Consensus 21 ~~~~I~~~C~~T~YP~~C~ssLs~~~~----~p~~Li~aal~vtl~~~~~a~~~~~~l~~~~~~~~~~r-~~~Al~DC~E 95 (497)
T PLN02698 21 YQNEVQRECSFTKYPSLCVQTLRGLRH----DGVDIVSVLVNKTISETNLPLSSSMGSSYQLSLEEATY-TPSVSDSCER 95 (497)
T ss_pred HHHHHHHhccCCCChHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcChH-HHHHHHHHHH
Confidence 356799999999999999999999774 899999999999999999999999988643 2 3477 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc---chHHH---HHHHHhchhchhhhhhhcCC-C----CCCCCchHHHHHHHHHHHHHHHHH
Q 047586 105 QYGRSLNDMEYANECLKIK---YLRGI---YMAILSSKVAAGACTREFET-P----PADKSGLIERNRKLRIYGQIIVLA 173 (179)
Q Consensus 105 ~y~~a~~~l~~A~~~l~~~---~~~~~---lsaa~t~~~~~~tC~d~f~~-~----~~~~~~l~~~~~~~~~l~s~alai 173 (179)
+|++++++|++++.+++.. .++++ ||+|+++ ++||.|||.+ . ...++++..+..++.+|++|+|+|
T Consensus 96 ll~dsvd~L~~Sl~~l~~~~~~~~~Dv~TWLSAALT~---q~TClDGF~~~~~~~~~~v~~~i~~~l~~~~~ltSNALAm 172 (497)
T PLN02698 96 LMKMSLKRLRQSLLALKGSSRKNKHDIQTWLSAALTF---QQACKDSIVDSTGYSGTSAISQISQKMDHLSRLVSNSLAL 172 (497)
T ss_pred HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhcc---hhhHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988752 23444 9999999 9999999942 1 236778889999999999999999
Q ss_pred HhcCC
Q 047586 174 SVLMP 178 (179)
Q Consensus 174 ~~~l~ 178 (179)
++.+.
T Consensus 173 v~~l~ 177 (497)
T PLN02698 173 VNRIT 177 (497)
T ss_pred Hhhhh
Confidence 98764
No 19
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=99.84 E-value=3.2e-20 Score=160.51 Aligned_cols=139 Identities=12% Similarity=0.114 Sum_probs=118.2
Q ss_pred HHHhhcCCCcccHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCChHHHHHHHHHHHHHHH
Q 047586 33 EDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKN-----DTQSALMKSRYSACLMQYG 107 (179)
Q Consensus 33 ~~~C~~t~~~~~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~-----~~~~~~~k~aL~~C~~~y~ 107 (179)
...|+.|+||++|.++|.+.+... .+++++++.+++.++.++..+...+.++... ..+++ .+.|++||.|+++
T Consensus 3 ~~~C~~T~YP~lC~ssLs~~~~~~-~~p~~l~~aaL~vtl~~a~~a~~~vs~l~~~~~~~~~~~~r-~~~AL~DC~ELld 80 (538)
T PLN03043 3 SLACKSTLYPKLCRSILSTVKSSP-SDPYEYGKFSVKQCLKQARRLSKVINYYLTHENQPGKMTHE-EIGALADCGELSE 80 (538)
T ss_pred CcccCCCCCcHHHHHHHhhccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCHH-HHHHHHHHHHHHH
Confidence 357999999999999999877543 4999999999999999999999999988631 36778 9999999999999
Q ss_pred HHHHHHHHHHHHHHhc---------chHHHHHHHHhchhchhhhhhhcCCCC-CCCCchHHHHHHHHHHHHHHHHHHhc
Q 047586 108 RSLNDMEYANECLKIK---------YLRGIYMAILSSKVAAGACTREFETPP-ADKSGLIERNRKLRIYGQIIVLASVL 176 (179)
Q Consensus 108 ~a~~~l~~A~~~l~~~---------~~~~~lsaa~t~~~~~~tC~d~f~~~~-~~~~~l~~~~~~~~~l~s~alai~~~ 176 (179)
+++++|++++.+++.. |...+||+|+|+ ++||.|||.+.+ ..+..|.....++.+|++|+|+|++.
T Consensus 81 dSvD~L~~Sl~~L~~~~~~~~~~~~DvqTWLSAALTn---qdTClDGF~~~~~~~k~~i~~~l~nvt~LtSNaLAlv~~ 156 (538)
T PLN03043 81 LNVDYLETISSELKSAELMTDALVERVTSLLSGVVTN---QQTCYDGLVDSKSSFAAALGAPLGNLTRLYSVSLGLVSH 156 (538)
T ss_pred HHHHHHHHHHHHHhccccccccchhhHHHhHHHhhcC---hhhhhchhhccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998643 223339999999 999999997533 25566778889999999999999984
No 20
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=99.76 E-value=1.5e-17 Score=143.01 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHhcccccccCChhHHHHHhhcCCCcccHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 047586 6 FCASFIILLSTIPAISPSSVNVSENDIEDLCKNTIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASL 85 (179)
Q Consensus 6 ~~~~f~~lll~~l~~~~~~~~~~~~~i~~~C~~t~~~~~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l 85 (179)
-++||++||+.++++....+-......+..|..++ ..+++.+++.+..++..+...+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~L~~tl~~a~~a~~~vs~l 62 (520)
T PLN02201 3 TLIFFLILLTLSLCVSSKEAFSSTDLLQMECLKVP--------------------PSEFVSSLKTTVDVIRKVVSIVSQF 62 (520)
T ss_pred hHHHHHHHHHhccccccccccccccchhhhhhhcc--------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788777777777766555445566666665543 3677888999999999999999988
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------chHHHHHHHHhchhchhhhhhhcCCCCC-C
Q 047586 86 AKNDTQSALMKSRYSACLMQYGRSLNDMEYANECLKIK------------YLRGIYMAILSSKVAAGACTREFETPPA-D 152 (179)
Q Consensus 86 ~~~~~~~~~~k~aL~~C~~~y~~a~~~l~~A~~~l~~~------------~~~~~lsaa~t~~~~~~tC~d~f~~~~~-~ 152 (179)
.+...+++ .+.|++||.|++++++++|++++.+++.. |....||+|+++ ++||.|||++.++ .
T Consensus 63 ~~~~~~~r-~~~Al~DC~ELl~davD~L~~Sl~eL~~~~~~~~~~~~~~~DvqTWLSAALTn---q~TClDGF~~~~~~~ 138 (520)
T PLN02201 63 DKVFGDSR-LSNAISDCLDLLDFAAEELSWSISASQNPNGKDNSTGDVGSDLRTWLSAALSN---QDTCIEGFDGTNGIV 138 (520)
T ss_pred hhccCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHhhhcc---hhhhhhhhhccccch
Confidence 76556888 99999999999999999999999988632 122339999999 9999999975433 4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcC
Q 047586 153 KSGLIERNRKLRIYGQIIVLASVLM 177 (179)
Q Consensus 153 ~~~l~~~~~~~~~l~s~alai~~~l 177 (179)
+..+.....++.++++|+|+|++..
T Consensus 139 k~~v~~~l~nvt~LtSNaLALv~~~ 163 (520)
T PLN02201 139 KKLVAGSLSQVGSTVRELLTMVHPP 163 (520)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556677889999999999999764
No 21
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=99.70 E-value=3e-16 Score=135.02 Aligned_cols=118 Identities=13% Similarity=0.127 Sum_probs=100.2
Q ss_pred CCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cchHHH---
Q 047586 57 KADFEGLTQISIDLSRSFVLETSAMLASLAKN---DTQSALMKSRYSACLMQYGRSLNDMEYANECLKI--KYLRGI--- 128 (179)
Q Consensus 57 ~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~---~~~~~~~k~aL~~C~~~y~~a~~~l~~A~~~l~~--~~~~~~--- 128 (179)
+.|+++|++.+++.++.++..+...+..+.+. ..+++ .+.|++||.|+|++++++|++++.+++. +.++++
T Consensus 48 ~~~~~~L~~aaL~vtl~~a~~a~~~vs~L~~~~~~~l~~r-~~~Al~DC~El~~davd~L~~S~~~l~~~~~~~~Dv~TW 126 (530)
T PLN02933 48 TKTIPELIIADLNLTILKVNLASSNFSDLQTRLGPNLTHR-ERCAFEDCLGLLDDTISDLTTAISKLRSSSPEFNDVSML 126 (530)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence 34899999999999999999999999988642 36788 9999999999999999999999999876 344555
Q ss_pred HHHHHhchhchhhhhhhcCCCC---------CCCCchHHHHHHHHHHHHHHHHHHhcCC
Q 047586 129 YMAILSSKVAAGACTREFETPP---------ADKSGLIERNRKLRIYGQIIVLASVLMP 178 (179)
Q Consensus 129 lsaa~t~~~~~~tC~d~f~~~~---------~~~~~l~~~~~~~~~l~s~alai~~~l~ 178 (179)
||+|+++ ++||.|||++.. ..+..+.....++.+|++|+|+|++.++
T Consensus 127 LSAALT~---q~TC~DGF~~~~~~~~~~~~~~vk~~v~~~l~~v~~LtSNALAlv~~ls 182 (530)
T PLN02933 127 LSNAMTN---QDTCLDGFSTSDNENNNDMTYELPENLKESILDISNHLSNSLAMLQNIS 182 (530)
T ss_pred HHHHhcc---hhhHhhhhhccCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999 999999997432 2445677778899999999999998653
No 22
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=99.63 E-value=2.9e-15 Score=127.71 Aligned_cols=140 Identities=14% Similarity=0.015 Sum_probs=118.2
Q ss_pred HHhhcCCCcccHHHhhhcCC----CCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ChHHHHHHHHHH----HH
Q 047586 34 DLCKNTIDAQFCVKVLKSDP----RTPKADFEGLTQISIDLSRSFVLETSAMLASLAKNDT-QSALMKSRYSAC----LM 104 (179)
Q Consensus 34 ~~C~~t~~~~~C~~~L~s~p----~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~~~-~~~~~k~aL~~C----~~ 104 (179)
..|..+++|+.|...+.... .....++..++..+++.+..++..+...+..+.+... +++ .+.+++|| .|
T Consensus 3 ~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~a~~dc~~~c~e 81 (509)
T PLN02488 3 GVCKGYDDKQSCQNLLLELKTVSSSLSEMRCRDLLIIVLKNSVWRIDMAMIGVMEDTKLLEEMEN-DMLGVKEDTNLFEE 81 (509)
T ss_pred eecCCCCChHHHHHHHHhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-hhhhHHHhHHHHHH
Confidence 46999999999999988765 3333368999999999999999999999999987665 899 99999999 99
Q ss_pred HHHHHHHHHHHHHHHHHhc------chHHH---HHHHHhchhchhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 047586 105 QYGRSLNDMEYANECLKIK------YLRGI---YMAILSSKVAAGACTREFETPPADKSGLIERNRKLRIYGQIIVLASV 175 (179)
Q Consensus 105 ~y~~a~~~l~~A~~~l~~~------~~~~~---lsaa~t~~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~s~alai~~ 175 (179)
+|++++++|.+++..+... .++++ ||+|+++ ++||.|||... ..+..|.....++.+|++|+|+|+.
T Consensus 82 l~~~~~~~l~~s~~~~~~~~~~~~~~~~d~~twLSa~lt~---q~TC~dg~~~~-~~~~~~~~~l~~~~~~~sn~La~~~ 157 (509)
T PLN02488 82 MMESAKDRMIRSVEELLGGESPNLGSYENVHTWLSGVLTS---YITCIDEIGEG-AYKRRVEPELEDLISRARVALAIFI 157 (509)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCcHHHHHHHHHHhHhc---hhhHhccccCc-chHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998521 13344 9999999 99999999533 3566677888999999999999997
Q ss_pred cCC
Q 047586 176 LMP 178 (179)
Q Consensus 176 ~l~ 178 (179)
.+.
T Consensus 158 ~~~ 160 (509)
T PLN02488 158 SIS 160 (509)
T ss_pred ccc
Confidence 653
No 23
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=99.37 E-value=5.8e-12 Score=108.48 Aligned_cols=122 Identities=12% Similarity=0.031 Sum_probs=86.4
Q ss_pred CCCcccHHHhhhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047586 39 TIDAQFCVKVLKSDPRTPKADFEGLTQISIDLSRSFVLETSAMLASLAKNDTQSALMKSRYSACLMQYGRSLNDMEYANE 118 (179)
Q Consensus 39 t~~~~~C~~~L~s~p~s~~ad~~~L~~iai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~aL~~C~~~y~~a~~~l~~A~~ 118 (179)
.+||..|..+|++-..+ -++.++..+++..+..+..+ .... .-.|++||.|++++++++|+++++
T Consensus 57 ~~~~~~~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~Al~DC~ELlddavd~L~~S~~ 121 (529)
T PLN02170 57 SPSSSSKQGFLSSVQES---MNHALFARSLAFNLTLSHRT-----------VQTH-TFDPVNDCLELLDDTLDMLSRIVV 121 (529)
T ss_pred CCCcchhhhhhhhhhcc---ChHHHHHhhhHhhhhhhhhh-----------cccc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999975332 26666666665544411111 1122 458899999999999999999986
Q ss_pred HHHhc----chHHHHHHHHhchhchhhhhhhcCCCC---CCCCchHHHHHHHHHHHHHHHHHHhcCC
Q 047586 119 CLKIK----YLRGIYMAILSSKVAAGACTREFETPP---ADKSGLIERNRKLRIYGQIIVLASVLMP 178 (179)
Q Consensus 119 ~l~~~----~~~~~lsaa~t~~~~~~tC~d~f~~~~---~~~~~l~~~~~~~~~l~s~alai~~~l~ 178 (179)
..... |...+||+|+++ ++||.|||++.. ..+..+.....++.+|++|+|+|++.+.
T Consensus 122 ~~~~~~~~~DvqTWLSAALTn---q~TClDGf~~~~~~~~~~~~~~~~l~nv~eLtSNALALv~~~~ 185 (529)
T PLN02170 122 IKHADHDEEDVHTWLSAALTN---QETCEQSLQEKSSSYKHGLAMDFVARNLTGLLTNSLDLFVSVK 185 (529)
T ss_pred hhccccchhHHHHHHHHHHhc---hhhHhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 54432 233449999999 999999997532 1223355566889999999999998753
No 24
>PLN02916 pectinesterase family protein
Probab=99.09 E-value=4.3e-10 Score=96.62 Aligned_cols=81 Identities=9% Similarity=0.018 Sum_probs=65.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---HHHHHhchhchhhhhhhcCCCCCCCCchHHHHHHHHHH
Q 047586 90 TQSALMKSRYSACLMQYGRSLNDMEYANECLKIKYLRGI---YMAILSSKVAAGACTREFETPPADKSGLIERNRKLRIY 166 (179)
Q Consensus 90 ~~~~~~k~aL~~C~~~y~~a~~~l~~A~~~l~~~~~~~~---lsaa~t~~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l 166 (179)
.+.. .-.|++||.|+|++++++|++++..+.....+++ ||+|+|+ ++||.|||++..... .....++.++
T Consensus 57 ~~~~-~~~Al~DC~ELl~dSvd~L~~Sl~~~~~~~~~DvqTWLSAALTn---q~TClDGf~~~~~~~---~~~v~nvt~l 129 (502)
T PLN02916 57 SYYN-LGEALSDCEKLYDESEARLSKLLVSHENFTVEDARTWLSGVLAN---HHTCLDGLEQKGQGH---KPMAHNVTFV 129 (502)
T ss_pred Cccc-HhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHhC---HhHHHHhhhhccccc---hHHHHHHHHH
Confidence 4556 7899999999999999999999987765434444 9999999 999999997432222 2345789999
Q ss_pred HHHHHHHHhcC
Q 047586 167 GQIIVLASVLM 177 (179)
Q Consensus 167 ~s~alai~~~l 177 (179)
++|+|+|++.+
T Consensus 130 tSNaLAlv~~~ 140 (502)
T PLN02916 130 LSEALALYKKS 140 (502)
T ss_pred HHHHHHHhhhh
Confidence 99999999765
No 25
>PF07870 DUF1657: Protein of unknown function (DUF1657); InterPro: IPR012452 This domain appears to be restricted to the Bacillales.
Probab=83.31 E-value=7.3 Score=23.03 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 047586 70 LSRSFVLETSAMLASLAKNDTQSALMKSRYSACLMQYGRSLNDME 114 (179)
Q Consensus 70 ~a~~~a~~~~~~i~~l~~~~~~~~~~k~aL~~C~~~y~~a~~~l~ 114 (179)
.+......+.+....+.-.+.|+. .|..|..|.+..+.++..|+
T Consensus 4 q~lAslK~~qA~Le~fal~T~d~~-AK~~y~~~a~~l~~ii~~L~ 47 (50)
T PF07870_consen 4 QTLASLKKAQADLETFALQTQDQE-AKQMYEQAAQQLEEIIQDLE 47 (50)
T ss_pred HHHHHHHHHHhhHHHHHhhcCCHH-HHHHHHHHHHHHHHHHHHhH
Confidence 344455555555555555678899 99999999999999888776
No 26
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.38 E-value=4.5 Score=26.77 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 047586 99 YSACLMQYGRSLNDMEYANECLKIK 123 (179)
Q Consensus 99 L~~C~~~y~~a~~~l~~A~~~l~~~ 123 (179)
.+||.|.|-+-+.++++|.++++++
T Consensus 67 fnDc~eA~veL~~~IkEAr~~L~rk 91 (95)
T KOG4841|consen 67 FNDCEEAAVELQSQIKEARADLARK 91 (95)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 7899999999999999999999875
No 27
>KOG3470 consensus Beta-tubulin folding cofactor A [Posttranslational modification, protein turnover, chaperones]
Probab=64.80 E-value=43 Score=23.05 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047586 69 DLSRSFVLETSAMLASLAKNDTQSAL---MKSRYSACLMQYGRSLNDMEYANECLKI 122 (179)
Q Consensus 69 ~~a~~~a~~~~~~i~~l~~~~~~~~~---~k~aL~~C~~~y~~a~~~l~~A~~~l~~ 122 (179)
......+...-..+.++..++.||.. .+..|..|.++.-++..+|++|...|.+
T Consensus 23 ~~Yekev~~eeakvakl~~dg~d~ydlkkQeeVl~et~~mlPD~~~RL~~a~~DLe~ 79 (107)
T KOG3470|consen 23 EYYEKEVKEEEAKVAKLKDDGADPYDLKKQEEVLKETRMMLPDSQRRLRKAYEDLES 79 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 34555666666777777766666632 5678999999999999999999988875
No 28
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=63.86 E-value=4.6 Score=27.12 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047586 99 YSACLMQYGRSLNDMEYANECLKIKY 124 (179)
Q Consensus 99 L~~C~~~y~~a~~~l~~A~~~l~~~~ 124 (179)
++||.|.|..-..++++|.++++++.
T Consensus 63 FnDcpeA~~eL~~eI~eAK~dLr~kG 88 (91)
T PF08285_consen 63 FNDCPEAAKELQKEIKEAKADLRKKG 88 (91)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 78899999999999999999998754
No 29
>PF10510 PIG-S: Phosphatidylinositol-glycan biosynthesis class S protein; InterPro: IPR019540 Phosphatidylinositol-glycan biosynthesis class S protein (PIG-S) is one of several key, core components of the glycosylphosphatidylinositol (GPI) trans-amidase complex that mediates GPI anchoring in the endoplasmic reticulum. Anchoring occurs when a protein's C-terminal GPI attachment signal peptide is replaced with a pre-assembled GPI []. Mammalian GPI transamidase consists of at least five components: Gaa1, Gpi8, PIG-S, PIG-T, and PIG-U, all five of which are required for its function. It is possible that Gaa1, Gpi8, PIG-S, and PIG-T form a tightly associated core that is only weakly associated with PIG-U. The exact function of PIG-S is unclear [].
Probab=56.81 E-value=53 Score=29.06 Aligned_cols=84 Identities=15% Similarity=0.080 Sum_probs=54.2
Q ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhchhc
Q 047586 59 DFEGLTQISIDLSRSFVLETSAMLASLAKNDTQSALMKSRYSACLMQYGRSLNDMEYANECLKIKYLRGIYMAILSSKVA 138 (179)
Q Consensus 59 d~~~L~~iai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~aL~~C~~~y~~a~~~l~~A~~~l~~~~~~~~lsaa~t~~~~ 138 (179)
....|.+.-+-.-...+.++..-+.+|.++-.+-. .-++=.+.-..+++.++.|.+.++.|++..++..+..+
T Consensus 389 eld~l~r~r~~~~l~~a~~TL~SL~~L~~~i~~i~----I~~~V~~~v~~al~~l~~a~~~l~~~~~~~al~~a~~a--- 461 (517)
T PF10510_consen 389 ELDSLLRRRTVENLASASSTLQSLAKLLDSIPNIV----IPDEVAERVQQALEALEQAIDALNNGDLEEALAHAREA--- 461 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----ccHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH---
Confidence 34555555444444455555554455544322111 11223345566889999999999999999999999888
Q ss_pred hhhhhhhcCCC
Q 047586 139 AGACTREFETP 149 (179)
Q Consensus 139 ~~tC~d~f~~~ 149 (179)
...|+.+|-++
T Consensus 462 ~~~ae~AFfd~ 472 (517)
T PF10510_consen 462 FALAERAFFDP 472 (517)
T ss_pred HHHHHHHhCCH
Confidence 99999999643
No 30
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=45.47 E-value=23 Score=17.55 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=5.3
Q ss_pred hhhHHHHHH
Q 047586 3 CLQFCASFI 11 (179)
Q Consensus 3 ~~~~~~~f~ 11 (179)
+..+.+||+
T Consensus 6 FalivVLFI 14 (24)
T PF09680_consen 6 FALIVVLFI 14 (24)
T ss_pred chhHHHHHH
Confidence 445666774
No 31
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=42.50 E-value=28 Score=17.63 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=5.1
Q ss_pred hhhHHHHHH
Q 047586 3 CLQFCASFI 11 (179)
Q Consensus 3 ~~~~~~~f~ 11 (179)
+..+.+||+
T Consensus 8 f~livVLFI 16 (26)
T TIGR01732 8 FALIVVLFI 16 (26)
T ss_pred hHHHHHHHH
Confidence 444666664
No 32
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.48 E-value=1e+02 Score=20.66 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=39.0
Q ss_pred CHHhHHHHHH--HHHHHHHHHHHHHHHH-hhh----c---CCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047586 59 DFEGLTQISI--DLSRSFVLETSAMLAS-LAK----N---DTQSALMKSRYSACLMQYGRSLNDMEYANE 118 (179)
Q Consensus 59 d~~~L~~iai--~~a~~~a~~~~~~i~~-l~~----~---~~~~~~~k~aL~~C~~~y~~a~~~l~~A~~ 118 (179)
+.++.+.-.+ ++|..+|.+....+.. --+ . +.++. .+.++..|.+-|-++-.-+.+++-
T Consensus 17 ~~~~~~m~qVkqqlAvAnAqeLv~kisekCf~KCit~PGssl~~~-e~~Cis~CmdRyMdawniVSrty~ 85 (97)
T KOG1733|consen 17 TTEGELMNQVKQQLAVANAQELVSKISEKCFDKCITKPGSSLDSS-EKSCISRCMDRYMDAWNIVSRTYI 85 (97)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCcc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444433 5777777777665552 211 1 25778 999999999999998776666543
No 33
>KOG2459 consensus GPI transamidase complex, GPI17/PIG-S component, involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=38.91 E-value=1.8e+02 Score=25.93 Aligned_cols=43 Identities=14% Similarity=0.028 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhchhchhhhhhhcCC
Q 047586 103 LMQYGRSLNDMEYANECLKIKYLRGIYMAILSSKVAAGACTREFET 148 (179)
Q Consensus 103 ~~~y~~a~~~l~~A~~~l~~~~~~~~lsaa~t~~~~~~tC~d~f~~ 148 (179)
.+.-..++..+..|.+++..|.+..+++....+ -.-|+.+|-+
T Consensus 447 ~~~V~~al~~~~~a~~~l~~g~l~~a~~~s~eA---~~lsE~AfFd 489 (536)
T KOG2459|consen 447 ADRVTRALAALLQAIDALSPGRLNSALSLSNEA---RSLSESAFFD 489 (536)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH---HHHHHhhcCC
Confidence 445567888888999999999999898888888 8999999964
No 34
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=33.20 E-value=1.8e+02 Score=20.74 Aligned_cols=60 Identities=3% Similarity=0.004 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCh-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcchHHH
Q 047586 68 IDLSRSFVLETSAMLASLAKNDTQS-ALMKSRYSACLMQYGR-SLNDMEYANECLKIKYLRGI 128 (179)
Q Consensus 68 i~~a~~~a~~~~~~i~~l~~~~~~~-~~~k~aL~~C~~~y~~-a~~~l~~A~~~l~~~~~~~~ 128 (179)
+..+......+.............+ . .+...+.-.+.|+. ....++..+..++.||+...
T Consensus 84 l~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~l~~~~~al~~~d~~~~ 145 (171)
T PF02203_consen 84 LARAEQNLEQAEQAFDAFKALPHASPE-ERALADELEASFDAYLQQALDPLLAALRAGDIAAF 145 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS---GTG-GHHHHHHHHHHHHH-HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCcc-hHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCHHHH
Confidence 3444445555555555554443333 6 77889999999999 66888999999999987655
No 35
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=28.15 E-value=1.9e+02 Score=19.36 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=31.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh----hhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047586 60 FEGLTQISIDLSRSFVLETSAMLASL----AKNDTQSALMKSRYSACLMQYGRSLNDMEYANE 118 (179)
Q Consensus 60 ~~~L~~iai~~a~~~a~~~~~~i~~l----~~~~~~~~~~k~aL~~C~~~y~~a~~~l~~A~~ 118 (179)
.-+|+.+++..... ...+...+ .+--.|+. .|-.+..|..+|..+...-++.+.
T Consensus 7 li~Laa~ai~l~~~----~~~~l~~Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~~~~~l~ 64 (97)
T PF12755_consen 7 LIGLAAVAIALGKD----ISKYLDEILPPVLKCFDDQD-SRVRYYACEALYNISKVARGEILP 64 (97)
T ss_pred HHHHHHHHHHchHh----HHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566665555444 33333333 33346666 778899999999887544333333
No 36
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=25.91 E-value=65 Score=17.81 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHH
Q 047586 5 QFCASFIILLSTIP 18 (179)
Q Consensus 5 ~~~~~f~~lll~~l 18 (179)
.+-|||..|+++|.
T Consensus 15 NRTSLy~GlLlifv 28 (39)
T PRK00753 15 NRTSLYLGLLLVFV 28 (39)
T ss_pred chhhHHHHHHHHHH
Confidence 36789999988883
No 37
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=25.81 E-value=69 Score=17.58 Aligned_cols=13 Identities=15% Similarity=-0.033 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 047586 6 FCASFIILLSTIP 18 (179)
Q Consensus 6 ~~~~f~~lll~~l 18 (179)
+-|||..|+++|+
T Consensus 14 RTSLY~GLllifv 26 (37)
T PF02419_consen 14 RTSLYWGLLLIFV 26 (37)
T ss_dssp CCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHH
Confidence 5688888888773
No 38
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=25.73 E-value=1.6e+02 Score=17.82 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047586 90 TQSALMKSRYSACLMQYGRSLNDMEYANE 118 (179)
Q Consensus 90 ~~~~~~k~aL~~C~~~y~~a~~~l~~A~~ 118 (179)
.+.. ++.+++.|.+-|-++-..+.+.+.
T Consensus 37 L~~~-E~~Ci~~C~~ky~~~~~~v~~~~~ 64 (66)
T PF02953_consen 37 LSSK-EESCIDNCVDKYIDTNQFVSKRFQ 64 (66)
T ss_dssp --HH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cchh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677 999999999999999888777653
No 39
>CHL00038 psbL photosystem II protein L
Probab=25.33 E-value=77 Score=17.44 Aligned_cols=14 Identities=14% Similarity=-0.014 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHH
Q 047586 5 QFCASFIILLSTIP 18 (179)
Q Consensus 5 ~~~~~f~~lll~~l 18 (179)
-+-||+..|+|+|.
T Consensus 14 NRTSLy~GLLlifv 27 (38)
T CHL00038 14 NRTSLYWGLLLIFV 27 (38)
T ss_pred hhhhHHHHHHHHHH
Confidence 36789999988883
No 40
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=24.67 E-value=2.4e+02 Score=19.43 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHH
Q 047586 102 CLMQYGRSLNDMEYANECLKIKYLRG 127 (179)
Q Consensus 102 C~~~y~~a~~~l~~A~~~l~~~~~~~ 127 (179)
=..+|+.++..++.|...+..|+++.
T Consensus 22 i~~Lyd~ai~~l~~a~~a~~~~~~~~ 47 (122)
T PF02561_consen 22 ILMLYDGAIEFLKQAKEAIEQGDIEE 47 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 34445555555555555555554443
No 41
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=23.74 E-value=2.2e+02 Score=20.51 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 047586 100 SACLMQYGRSLNDMEYANECLKIKYLRGI 128 (179)
Q Consensus 100 ~~C~~~y~~a~~~l~~A~~~l~~~~~~~~ 128 (179)
+-=..+|+.++..+..|...+..+++...
T Consensus 22 ~Li~MLyeg~l~~l~~A~~aie~~~i~~k 50 (132)
T COG1516 22 KLILMLYEGALKFLKRAKEAIEQEDIEEK 50 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 44567888888888888888888877544
No 42
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=23.16 E-value=66 Score=19.46 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 047586 7 CASFIILL 14 (179)
Q Consensus 7 ~~~f~~ll 14 (179)
..+|++|+
T Consensus 14 ~~~lLili 21 (61)
T PF06692_consen 14 SGPLLILI 21 (61)
T ss_pred hhHHHHHH
Confidence 33444443
No 43
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=21.57 E-value=76 Score=21.60 Aligned_cols=7 Identities=0% Similarity=0.121 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 047586 111 NDMEYAN 117 (179)
Q Consensus 111 ~~l~~A~ 117 (179)
+.|..++
T Consensus 99 dslsksv 105 (121)
T PF10669_consen 99 DSLSKSV 105 (121)
T ss_pred HHHHHHH
Confidence 3333333
No 44
>COG4383 Mu-like prophage protein gp29 [Function unknown]
Probab=21.11 E-value=1.7e+02 Score=25.26 Aligned_cols=65 Identities=11% Similarity=0.128 Sum_probs=39.5
Q ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Q 047586 59 DFEGLTQISIDLSRSFVLETSAMLASLAKNDTQSALMKSRYSACLMQYGRSLNDMEYANECLKIKYLRGIYMAIL 133 (179)
Q Consensus 59 d~~~L~~iai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~aL~~C~~~y~~a~~~l~~A~~~l~~~~~~~~lsaa~ 133 (179)
+++++..-+++.+ -+..-...+.-+.+ . .-+||+.| .|+.+...|...+..++...+...++-|+
T Consensus 440 e~~d~ld~~~d~a--~a~~~~~~idPllr-----~-vv~Al~~~--~yeea~~~L~~lY~~ldda~l~T~l~~ai 504 (517)
T COG4383 440 EPQDILDGALDDA--VAPDLQSQIDPLLR-----P-VVAALNAG--SYEEAQAALNALYPELDDAELRTLLQRAI 504 (517)
T ss_pred ChHHHhhhccccc--cchhhHhhhhHHHH-----H-HHHHHHhc--CHHHHHHHHHHhhhccChHHHHHHHHHHH
Confidence 5666655554433 12222233333332 2 56788888 89999999998888887666665555444
No 45
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=20.96 E-value=52 Score=18.42 Aligned_cols=19 Identities=16% Similarity=0.386 Sum_probs=15.8
Q ss_pred HHHhhcCCCcccHHHhhhc
Q 047586 33 EDLCKNTIDAQFCVKVLKS 51 (179)
Q Consensus 33 ~~~C~~t~~~~~C~~~L~s 51 (179)
.--|...+++++|.+.+.+
T Consensus 13 r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 13 RWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred ceECCCCcchhhHHHHhCC
Confidence 3458888899999999987
No 46
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=20.87 E-value=1.6e+02 Score=21.69 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047586 99 YSACLMQYGRSLNDMEYANECLKIKY 124 (179)
Q Consensus 99 L~~C~~~y~~a~~~l~~A~~~l~~~~ 124 (179)
|++|......++..|+.+++-++.|.
T Consensus 2 L~~cV~SL~~S~~lL~~Si~~L~~~~ 27 (153)
T PF08287_consen 2 LSNCVSSLRSSVQLLQSSIETLDSGT 27 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788888888888888888887763
No 47
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=20.84 E-value=1.1e+02 Score=20.17 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhcccccc
Q 047586 6 FCASFIILLSTIPAISPSSV 25 (179)
Q Consensus 6 ~~~~f~~lll~~l~~~~~~~ 25 (179)
+.+--+|++|++++++.++-
T Consensus 30 ILivLVIIiLlImlfqsSS~ 49 (85)
T PF10717_consen 30 ILIVLVIIILLIMLFQSSSN 49 (85)
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 33344455566666666543
No 48
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=20.77 E-value=56 Score=24.70 Aligned_cols=10 Identities=50% Similarity=1.152 Sum_probs=7.8
Q ss_pred chhhHHHHHH
Q 047586 2 ACLQFCASFI 11 (179)
Q Consensus 2 ~~~~~~~~f~ 11 (179)
||+.||.+|+
T Consensus 102 aCGLFC~lFL 111 (183)
T PF00770_consen 102 ACGLFCCLFL 111 (183)
T ss_dssp -HHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 7899999994
No 49
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=20.74 E-value=91 Score=18.29 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=18.2
Q ss_pred hHHHHHhhcCC-CcccHHHhhhcC
Q 047586 30 NDIEDLCKNTI-DAQFCVKVLKSD 52 (179)
Q Consensus 30 ~~i~~~C~~t~-~~~~C~~~L~s~ 52 (179)
.+|..+|..|. ++++|..+|..+
T Consensus 2 ~mv~~~s~~Tgmn~~~s~~CL~~n 25 (51)
T PF03943_consen 2 EMVQQFSQQTGMNLEWSQKCLEEN 25 (51)
T ss_dssp HHHHHHHHHCSS-CCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc
Confidence 57888998886 899999999864
No 50
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=20.36 E-value=2.5e+02 Score=20.65 Aligned_cols=40 Identities=5% Similarity=0.033 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHH----HHHHHhchhchhhhhh
Q 047586 102 CLMQYGRSLNDMEYANECLKIKYLRGI----YMAILSSKVAAGACTR 144 (179)
Q Consensus 102 C~~~y~~a~~~l~~A~~~l~~~~~~~~----lsaa~t~~~~~~tC~d 144 (179)
+.++-..+++.|..-..+|.+++|+.| ++.+.+. .+.|..
T Consensus 83 ~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t~h---~~E~~~ 126 (157)
T PF07304_consen 83 NGKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMTDH---VDECGN 126 (157)
T ss_dssp HT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHSS---HHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---HHHhhh
Confidence 345556677888888889999999988 4555555 555554
Done!