BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047597
(577 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NXC|A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals
The Molecular Basis For Substrate Specificity Among
Class I Enzymes (Family 47 Glycosidases)
Length = 478
Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 150/460 (32%), Positives = 233/460 (50%), Gaps = 59/460 (12%)
Query: 12 RQLRDEVREMFYHAFDGYMEHAFPLDELRPLSCEGEDS--LGGY-ALTLVDSLDTLALLG 68
R+ R +++EM HA++ Y +A+ L+EL+P+S EG S G T+VD+LDTL ++G
Sbjct: 18 REKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDTLFIMG 77
Query: 69 DRERFTTSVEWIGKNLQFDINKTVSVFETTIRVLGGLLSAHLIA----------RSSPRL 118
+ F + WI K L F++N VSVFE IR +GGLLSA+ ++ +L
Sbjct: 78 MKTEFQEAKSWIKKYLDFNVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKL 137
Query: 119 LPAFDTPTGIPFGSVNLLHGVDEH----ESKITSTAGGGTLTLEFGVLSRLTNDPIFEQV 174
LPAF TP+GIP+ +N+ G+ + + A GTL LEF LS L+ DP+F +
Sbjct: 138 LPAFHTPSGIPWALLNMKSGIGRNWPWASGGSSILAEFGTLHLEFMHLSHLSGDPVFAE- 196
Query: 175 TKKAVLGIWARRSKLN----LVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFG- 229
V+ I +KL+ L ++N +G+W Q +G DSFYEYLLKA+L+
Sbjct: 197 ---KVMKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSDK 253
Query: 230 -DEEYLYIFQESYQAAMHYLFNDP--WYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGDI 286
D E ++ ++ QA +L + ++ L F G+ L D
Sbjct: 254 TDLEAKKMYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLTCFAGGMFALGADG 313
Query: 287 DPAVRT--------------HAAFFSVWKRYGFTPEGFN----LATLTIQQGQKSYPLRP 328
P R H ++ + + G PE F + + +Q +K Y LRP
Sbjct: 314 APEARAQHYLELGAEIARTCHESYNRTYVKLG--PEAFRFDGGVEAIATRQNEKYYILRP 371
Query: 329 ELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCPCGYCHISDVEFHKK--EDHMESFF 386
E+IE+ +++ T DP+Y + V +L+ R GY + DV ++ +D +SFF
Sbjct: 372 EVIETYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGGYSGLRDVYIARESYDDVQQSFF 431
Query: 387 LAETVKYLWLLFDLAVGPDNLVENGPYK-YIFSTEGHLLP 425
LAET+KYL+L+F D+L+ P + +IF+TE H P
Sbjct: 432 LAETLKYLYLIFS----DDDLL---PLEHWIFNTEAHPFP 464
>pdb|4AYO|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31
pdb|4AYP|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Thiomannobioside
pdb|4AYQ|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Mannoimidazole
pdb|4AYR|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With Noeuromycin
Length = 447
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 139/422 (32%), Positives = 217/422 (51%), Gaps = 34/422 (8%)
Query: 2 LADGVTAEEARQLRDEVREMFYHAFDGYMEHAFPLDELRPLS-------CEGEDSLGGYA 54
+A T E+ + L +VR F A+ GY+ A+ DE+ P+S EG D LG
Sbjct: 1 MASETTPEDWKALAADVRSEFQWAWQGYVAKAWGKDEINPVSGTSRSFFIEGHD-LG--- 56
Query: 55 LTLVDSLDTLALLGDRERFTTSVEWIGKNLQFDINKTVSVFETTIRVLGGLLSAHL---- 110
L+LV++LDTL ++G F V+W+ NL FD++ VFET IR++GGLLSAHL
Sbjct: 57 LSLVEALDTLWIMGLDAEFQAGVDWVKANLSFDVDGNAQVFETNIRLVGGLLSAHLASGD 116
Query: 111 ---IARS---SPRLLPAFD-TPTGIPFGSVNLLHG-VDEHESKITSTAGGGTLTLEFGVL 162
+A++ + RL AF+ +P G+P+ VNL G V + E+ + GT EFGVL
Sbjct: 117 PVLLAKARDLADRLAKAFEASPHGLPWRYVNLRTGAVSDPETNLAEI---GTYLSEFGVL 173
Query: 163 SRLTNDPIFEQVTKKAVLGIWARRSKLNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLL 222
S+LT + + + K+A+ RRSK+ L+ A+I+ TG +T ++A I DSFYEYL
Sbjct: 174 SQLTGERKYFDMAKRAMRHTLDRRSKIGLMAANIHAMTGAFTSRNASIDVYADSFYEYLW 233
Query: 223 KAYLLFGDEEYLYIFQESYQAAMHYLFN----DPWYVEVNMDSAAIVWPLFNSLQAFWPG 278
A+ LFGDE+ E A + + W+ V+ ++ A+ + L A++ G
Sbjct: 234 DAWALFGDEDCKRWAVECVDAQLAHQAKRYDGRLWFPMVDFETGAVTGTAQSELAAYYAG 293
Query: 279 LQVLAGDIDPAVRTHAAFFSVWKRYGFTPEGFNLATLTIQQGQKSYPLRPELIESTYLLY 338
L G A+F + +G PE ++ T Q +K LRPE ++ L+
Sbjct: 294 LLGQVGRKAQGDDYLASFTYLQATFGVIPESIDVT--TGQPRRKHTGLRPEYPDACLNLW 351
Query: 339 KATRDPRYLDAGRDMVASLQYGTRCPCGYCHISDVEFH--KKEDHMESFFLAETVKYLWL 396
RDPRY ++ +R GY + D+ ++D+ ++ +E +KY +L
Sbjct: 352 LIDRDPRYRRLAAIHYREMKATSRAAFGYTALKDITTRPMTQDDNCPGYWWSEQMKYYYL 411
Query: 397 LF 398
LF
Sbjct: 412 LF 413
>pdb|1X9D|A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase
In Complex With Thio-Disaccharide Substrate Analogue
Length = 538
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 153/449 (34%), Positives = 234/449 (52%), Gaps = 48/449 (10%)
Query: 18 VREMFYHAFDGYMEHAFPLDELRPLSCEGEDSLGGYALTLVDSLDTLALLGDRERFTTSV 77
V ++F HA+ GY + A+ DEL+P+S + G LTL+D+LDT+ +LG R+ F +
Sbjct: 92 VIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFG-LGLTLIDALDTMWILGLRKEFEEAR 150
Query: 78 EWIGKNLQFDINKTVSVFETTIRVLGGLLSAHLIARSS----------PRLLPAFDTPTG 127
+W+ K L F+ + V++FE+TIR+LGGLLSA+ ++ S RL+PAF TP+
Sbjct: 151 KWVSKKLHFEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSK 210
Query: 128 IPFGSVNLLHGVDEHESKITSTAGGGTLT---LEFGVLSRLTNDPIFEQVTKKAVLGIWA 184
IP+ VN+ GV H + TS + +T LEF LSRLT D F++ +K I
Sbjct: 211 IPYSDVNIGTGV-AHPPRWTSDSTVAEVTSIQLEFRELSRLTGDKKFQEAVEKVTQHIHG 269
Query: 185 RRSKLN-LVGAHINVFTGEWTQKDA-GIGTSIDSFYEYLLKAYLLFGDEE--YLYIFQES 240
K + LV IN +G +T +G DS+YEYLLK ++ G +E L + E+
Sbjct: 270 LSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGKQETQLLEDYVEA 329
Query: 241 YQAAMHYLF--NDPWYVE-VNMDSAAIVWPLFNSLQAFWPGLQVL-------AGDIDPAV 290
+ +L ++P + V + + L F PG L A ++ A
Sbjct: 330 IEGVRTHLLRHSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQ 389
Query: 291 RTHAAFFSVWKRY--GFTPE--GFNL------ATLTIQQGQKSYPLRPELIESTYLLYKA 340
+ + ++ G +PE FNL + ++ + LRPE +ES + LY+
Sbjct: 390 ELMETCYQMNRQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRV 449
Query: 341 TRDPRYLDAGRDMVASLQYGTRCPC-GYCHISDVEFHKK---EDHMESFFLAETVKYLWL 396
T D +Y D G +++ S TR P GY I++V+ +K D MESFFL ET+KYL+L
Sbjct: 450 TGDRKYQDWGWEILQSFSRFTRVPSGGYSSINNVQDPQKPEPRDKMESFFLGETLKYLFL 509
Query: 397 LFDLAVGPDNLVENGPYKYIFSTEGHLLP 425
LF + P+ L + Y+F+TE H LP
Sbjct: 510 LF--SDDPNLLSLDA---YVFNTEAHPLP 533
>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase
Length = 458
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 153/449 (34%), Positives = 234/449 (52%), Gaps = 48/449 (10%)
Query: 18 VREMFYHAFDGYMEHAFPLDELRPLSCEGEDSLGGYALTLVDSLDTLALLGDRERFTTSV 77
V ++F HA+ GY + A+ DEL+P+S + G LTL+D+LDT+ +LG R+ F +
Sbjct: 14 VIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFG-LGLTLIDALDTMWILGLRKEFEEAR 72
Query: 78 EWIGKNLQFDINKTVSVFETTIRVLGGLLSAHLIARSS----------PRLLPAFDTPTG 127
+W+ K L F+ + V++FE+TIR+LGGLLSA+ ++ S RL+PAF TP+
Sbjct: 73 KWVSKKLHFEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSK 132
Query: 128 IPFGSVNLLHGVDEHESKITS---TAGGGTLTLEFGVLSRLTNDPIFEQVTKKAVLGIWA 184
IP+ VN+ GV H + TS A ++ LEF LSRLT D F++ +K I
Sbjct: 133 IPYSDVNIGTGV-AHPPRWTSDSTVAEVTSIQLEFRELSRLTGDKKFQEAVEKVTQHIHG 191
Query: 185 RRSKLN-LVGAHINVFTGEWTQKDA-GIGTSIDSFYEYLLKAYLLFGDEE--YLYIFQES 240
K + LV IN +G +T +G DS+YEYLLK ++ G +E L + E+
Sbjct: 192 LSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGKQETQLLEDYVEA 251
Query: 241 YQAAMHYLF--NDPWYVE-VNMDSAAIVWPLFNSLQAFWPGLQVL-------AGDIDPAV 290
+ +L ++P + V + + L F PG L A ++ A
Sbjct: 252 IEGVRTHLLRHSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQ 311
Query: 291 RTHAAFFSVWKRY--GFTPE--GFNL------ATLTIQQGQKSYPLRPELIESTYLLYKA 340
+ + ++ G +PE FNL + ++ + LRPE +ES + LY+
Sbjct: 312 ELMETCYQMNRQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRV 371
Query: 341 TRDPRYLDAGRDMVASLQYGTRCPC-GYCHISDVEFHKK---EDHMESFFLAETVKYLWL 396
T D +Y D G +++ S TR P GY I++V+ +K D MESFFL ET+KYL+L
Sbjct: 372 TGDRKYQDWGWEILQSFSRFTRVPSGGYSSINNVQDPQKPEPRDKMESFFLGETLKYLFL 431
Query: 397 LFDLAVGPDNLVENGPYKYIFSTEGHLLP 425
LF + P+ L + Y+F+TE H LP
Sbjct: 432 LF--SDDPNLLSLDA---YVFNTEAHPLP 455
>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With 1-Deoxymannojirimycin
pdb|1FO3|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With Kifunensine
Length = 460
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 153/449 (34%), Positives = 234/449 (52%), Gaps = 48/449 (10%)
Query: 18 VREMFYHAFDGYMEHAFPLDELRPLSCEGEDSLGGYALTLVDSLDTLALLGDRERFTTSV 77
V ++F HA+ GY + A+ DEL+P+S + G LTL+D+LDT+ +LG R+ F +
Sbjct: 14 VIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFG-LGLTLIDALDTMWILGLRKEFEEAR 72
Query: 78 EWIGKNLQFDINKTVSVFETTIRVLGGLLSAHLIARSS----------PRLLPAFDTPTG 127
+W+ K L F+ + V++FE+TIR+LGGLLSA+ ++ S RL+PAF TP+
Sbjct: 73 KWVSKKLHFEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSK 132
Query: 128 IPFGSVNLLHGVDEHESKITS---TAGGGTLTLEFGVLSRLTNDPIFEQVTKKAVLGIWA 184
IP+ VN+ GV H + TS A ++ LEF LSRLT D F++ +K I
Sbjct: 133 IPYSDVNIGTGV-AHPPRWTSDSTVAEVTSIQLEFRELSRLTGDKKFQEAVEKVTQHIHG 191
Query: 185 RRSKLN-LVGAHINVFTGEWTQKDA-GIGTSIDSFYEYLLKAYLLFGDEE--YLYIFQES 240
K + LV IN +G +T +G DS+YEYLLK ++ G +E L + E+
Sbjct: 192 LSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGKQETQLLEDYVEA 251
Query: 241 YQAAMHYLF--NDPWYVE-VNMDSAAIVWPLFNSLQAFWPGLQVL-------AGDIDPAV 290
+ +L ++P + V + + L F PG L A ++ A
Sbjct: 252 IEGVRTHLLRHSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQ 311
Query: 291 RTHAAFFSVWKRY--GFTPE--GFNL------ATLTIQQGQKSYPLRPELIESTYLLYKA 340
+ + ++ G +PE FNL + ++ + LRPE +ES + LY+
Sbjct: 312 ELMETCYQMNRQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRV 371
Query: 341 TRDPRYLDAGRDMVASLQYGTRCPC-GYCHISDVEFHKK---EDHMESFFLAETVKYLWL 396
T D +Y D G +++ S TR P GY I++V+ +K D MESFFL ET+KYL+L
Sbjct: 372 TGDRKYQDWGWEILQSFSRFTRVPSGGYSSINNVQDPQKPEPRDKMESFFLGETLKYLFL 431
Query: 397 LFDLAVGPDNLVENGPYKYIFSTEGHLLP 425
LF + P+ L + Y+F+TE H LP
Sbjct: 432 LF--SDDPNLLSLDA---YVFNTEAHPLP 455
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From
Saccharomyces Cerevisiae At 1.54 Angstrom Resolution
Length = 511
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 144/512 (28%), Positives = 221/512 (43%), Gaps = 97/512 (18%)
Query: 11 ARQLRDEVREMFYHAFDGYMEHAFPLDELRPLSCEGEDSLGG---YALTLVDSLDTLALL 67
A ++RD + MF ++ Y +H + D P+ + G +VDS+DTL L+
Sbjct: 2 AGEMRDRIESMFLESWRDYSKHGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLM 61
Query: 68 GD-----RERFTTSVE----WIGKNLQFDINKTVSVFETTIRVLGGLLSAHLIARS---- 114
+ + F ++ WI L FDI+ V+VFETTIR+LGGLLSA+ ++
Sbjct: 62 YNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLSAYHLSDVLEVG 121
Query: 115 ------------SPRLLPAF-DTPTGIPFGSVNLLHG--VDEH-ESKITSTAGGGTLTLE 158
RL AF T TGIP+ S+NL G V H + +STA TL +E
Sbjct: 122 NKTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADGGASSTAEFTTLQME 181
Query: 159 FGVLSRLTNDPIFEQVTKKAVLGIWARRSKLNLVGAHINVF----TGEWTQKDAGIGTSI 214
F L+ LT + + ++ ++ ++ LN + ++ TG++ G+
Sbjct: 182 FKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSRG 241
Query: 215 DSFYEYLLKAYLLFGDEEYLYIFQESYQAAMHYLF-----NDPWYV-EVNMDSAAIVWPL 268
DSFYEYLLK YLL + Y ++++S + +L + WY+ E + P
Sbjct: 242 DSFYEYLLKQYLLTHETLYYDLYRKSMEGMKKHLLAQSKPSSLWYIGEREQGLHGQLSPK 301
Query: 269 FNSLQAFWPGLQVLAGDIDPAVRTHAA----FFS-------------VWKRY-----GFT 306
+ L F GL LA + H A FFS ++ Y G
Sbjct: 302 MDHLVCFMGGL--LASGSTEGLSIHEARRRPFFSKSDWDLAKGITDTCYQMYKQSSSGLA 359
Query: 307 PEGFNLATLTIQQG---------------QKSYPLRPELIESTYLLYKATRDPRYLDAGR 351
PE I+Q + RPE +ES +Y + D +Y + G
Sbjct: 360 PEIVVFNDGNIKQDGWWRSSVGDFFVKPLDRHNLQRPETVESIMFMYHLSHDHKYREWGA 419
Query: 352 DMVASLQYGTRCPCG------YCHISDVEF--HKKEDHMESFFLAETVKYLWLLFDLAVG 403
++ S T C + +SD KK ++MESF+LAET+KYL++LF
Sbjct: 420 EIATSFFENTCVDCNDPKLRRFTSLSDCITLPTKKSNNMESFWLAETLKYLYILF----- 474
Query: 404 PDNLVENGPYKYIFSTEGHLLPATPQISLKRE 435
L E K +F+TE H P + LK +
Sbjct: 475 ---LDEFDLTKVVFNTEAHPFPVLDEEILKSQ 503
>pdb|1G6I|A Chain A, Crystal Structure Of The Yeast Alpha-1,2-Mannosidase With
Bound 1- Deoxymannojirimycin At 1.59 A Resolution
Length = 545
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 146/508 (28%), Positives = 221/508 (43%), Gaps = 97/508 (19%)
Query: 15 RDEVREMFYHAFDGYMEHAFPLDELRPLSCEGEDSLGG---YALTLVDSLDTLALLGD-- 69
RD + MF ++ Y +H + D P+ + G +VDS+DTL L+ +
Sbjct: 40 RDRIESMFLESWRDYSKHGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNSS 99
Query: 70 ---RERFTTSVE----WIGKNLQFDINKTVSVFETTIRVLGGLLSAHLIARS-------- 114
+ F ++ WI L FDI+ V+VFETTIR+LGGLLSA+ ++
Sbjct: 100 TLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLSAYHLSDVLEVGNKTV 159
Query: 115 --------SPRLLPAF-DTPTGIPFGSVNLLHG--VDEH-ESKITSTAGGGTLTLEFGVL 162
RL AF T TGIP+ S+NL G V H + +STA TL +EF L
Sbjct: 160 YLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADGGASSTAEFTTLQMEFKYL 219
Query: 163 SRLTNDPIFEQVTKKAVLGIWARRSKLNLVGAHINVF----TGEWTQKDAGIGTSIDSFY 218
+ LT + + ++ ++ ++ LN + ++ TG++ G+ DSFY
Sbjct: 220 AYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSRGDSFY 279
Query: 219 EYLLKAYLLFGDEEYLYIFQESYQAAMHYLF-----NDPWYV-EVNMDSAAIVWPLFNSL 272
EYLLK YLL + Y ++++S + +L + WY+ E + P + L
Sbjct: 280 EYLLKQYLLTHETLYYDLYRKSMEGMKKHLLAQSKPSSLWYIGEREQGLQGQLSPKMDHL 339
Query: 273 QAFWPGLQVLAGDIDPAVRTHAA----FFS-------------VWKRY-----GFTPE-- 308
F GL LA + H A FFS ++ Y G PE
Sbjct: 340 VCFMGGL--LASGSTEGLSIHEARRRPFFSKSDWDLAKGITDTCYQMYKQSSSGLAPEIV 397
Query: 309 GFNLATLTIQQGQKS-------YPL------RPELIESTYLLYKATRDPRYLDAGRDMVA 355
FN + +S PL RPE +ES +Y + D +Y + G ++
Sbjct: 398 VFNDGNIKQDGWWRSSVGDFFVKPLDRHNLQRPETVESIMFMYHLSHDHKYREWGAEIAT 457
Query: 356 SLQYGTRCPCG------YCHISDVEF--HKKEDHMESFFLAETVKYLWLLFDLAVGPDNL 407
S T C + +SD KK ++MESF+LAET+KYL++LF L
Sbjct: 458 SFFENTCVDCNDPKLRRFTSLSDCITLPTKKSNNMESFWLAETLKYLYILF--------L 509
Query: 408 VENGPYKYIFSTEGHLLPATPQISLKRE 435
E K +F+TE H P + LK +
Sbjct: 510 DEFDLTKVVFNTEAHPFPVLDEEILKSQ 537
>pdb|2RI8|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI8|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI9|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
pdb|2RI9|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
Length = 475
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 130/470 (27%), Positives = 210/470 (44%), Gaps = 70/470 (14%)
Query: 16 DEVREMFYHAFDGYMEHAFPLDELRPLSCEGEDSLGGYALTLVDSLDTLALLGDRERFTT 75
D V+E F HA++GYM++AFP DEL P+S DS G+ + VD+L T ++G +
Sbjct: 7 DAVKEAFQHAWNGYMKYAFPHDELTPVSNGHADSRNGWGASAVDALSTAVIMGKADVVNA 66
Query: 76 SVEWIGKNLQFDINKTVSVFETTIRVLGGLLSAHLIARSSPRLLP--------------- 120
+E + + TVS+FETTIR L G+LS + + + + L
Sbjct: 67 ILEHVADIDFSKTSDTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRN 126
Query: 121 -------AFDTPTGIPFGSVNLL-HGVDEHESKITSTAGGGTLTLEFGVLSRLTNDPIFE 172
AFDTP+G+P+ ++N+ HG D + A GTL LE+ LS LT D +
Sbjct: 127 LADVLKFAFDTPSGVPYNNINITSHGND--GATTNGLAVTGTLVLEWTRLSDLTGDEEYA 184
Query: 173 QVTKKAVLGIWARRSKLN-----LVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLL 227
++++KA + + + LVG+ IN+ G++ DSFYEYL+K Y+
Sbjct: 185 KLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIKMYVY 244
Query: 228 FGDEEYLYIFQESY----QAAMHYLFNDPW----------YVEVNMDSAAIVWPLFNSLQ 273
D + +++ + ++ + +L + P Y N D ++ F+
Sbjct: 245 --DPKRFETYKDRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNYDLSSQHLTCFDGGS 302
Query: 274 AFWPGLQVLAGD-IDPAVR----THAAFFSVWKR-----YGFTP--------EGFNLATL 315
G + D ID + A + S + +G+ P E + A
Sbjct: 303 FLLGGTVLDRQDFIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKVPSDQKEFYEKAGF 362
Query: 316 TIQQGQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCPCGYCHISDVEF 375
I G SY LRPE+IES Y ++ T Y D + ++ R G+ +SDV
Sbjct: 363 YISSG--SYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCRTDSGFAAVSDVNK 420
Query: 376 HK---KEDHMESFFLAETVKYLWLLFDLAVGPDNLVENGPYKYIFSTEGH 422
K D+ ESF AE +KY +L + + G ++++TE H
Sbjct: 421 ANGGSKYDNQESFLFAEVMKYSYLAHSEDAAW-QVQKGGKNTFVYNTEAH 469
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KKT|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|A Chain A, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|B Chain B, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
Length = 511
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 132/471 (28%), Positives = 212/471 (45%), Gaps = 72/471 (15%)
Query: 16 DEVREMFYHAFDGYMEHAFPLDELRPLSCEGEDSLGGYALTLVDSLDTLALLGDRERFTT 75
D V+E F HA++GYM++AFP DEL P+S DS G+ + VD+L T ++G +
Sbjct: 42 DAVKEAFQHAWNGYMKYAFPHDELTPVSNGHADSRNGWGASAVDALSTAVIMGKADVVNA 101
Query: 76 SVEWIGKNLQFDINKTVSVFETTIRVLGGLLSAHLIARSSPRLLP--------------- 120
+E + + TVS+FETTIR L G+LS + + + + L
Sbjct: 102 ILEHVADIDFSKTSDTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRN 161
Query: 121 -------AFDTPTGIPFGSVNLL-HGVDEHESKITSTAGGGTLTLEFGVLSRLTNDPIFE 172
AFDTP+G+P+ ++N+ HG D + A GTL LE+ LS LT D +
Sbjct: 162 LADVLKFAFDTPSGVPYNNINITSHGND--GATTNGLAVTGTLVLEWTRLSDLTGDEEYA 219
Query: 173 QVTKKAVLGIWARRSKLN-----LVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLL 227
++++KA + + + LVG+ IN+ G++ DSFYEYL+K Y+
Sbjct: 220 KLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIKMYVY 279
Query: 228 FGDEEYLYIFQESY----QAAMHYLFNDPW----------YVEVNMDSAAIVWPLFNSLQ 273
D + +++ + ++ + +L + P Y N D ++ F+
Sbjct: 280 --DPKRFETYKDRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNYDLSSQHLTCFDG-G 336
Query: 274 AFWPGLQVLAGD--IDPAVR----THAAFFSVWKR-----YGFTP--------EGFNLAT 314
+F G VL ID + A + S + +G+ P E + A
Sbjct: 337 SFLLGGTVLDRQDFIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKVPSDQKEFYEKAG 396
Query: 315 LTIQQGQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCPCGYCHISDVE 374
I G SY LRPE+IES Y ++ T Y D + ++ R G+ +SDV
Sbjct: 397 FYISSG--SYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCRTDSGFAAVSDVN 454
Query: 375 FHK---KEDHMESFFLAETVKYLWLLFDLAVGPDNLVENGPYKYIFSTEGH 422
K D+ ESF AE +KY +L + + G ++++TE H
Sbjct: 455 KANGGSKYDNQESFLFAEVMKYSYLAHSEDAAW-QVQKGGKNTFVYNTEAH 504
>pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|B Chain B, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|C Chain C, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|D Chain D, Alpha-1,2-Mannosidase From Trichoderma Reesei
Length = 503
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 128/478 (26%), Positives = 206/478 (43%), Gaps = 81/478 (16%)
Query: 18 VREMFYHAFDGYMEHAFPLDELRPLSCEGEDSLGGYALTLVDSLDTLALLGDRERFTTSV 77
V+ F +++ Y AFP D+L P+S +D G+ + +D LDT L+GD + T +
Sbjct: 19 VKAAFQTSWNAYHHFAFPHDDLHPVSNSFDDERNGWGSSAIDGLDTAILMGDADIVNTIL 78
Query: 78 EWIGKNLQFDI----NKTVSVFETTIRVLGGLLSAHLIARS------------------- 114
+++ + F N+ SVFET IR LGGLLSA+ + R
Sbjct: 79 QYV-PQINFTTTAVANQGSSVFETNIRYLGGLLSAYDLLRGPFSSLATNQTLVNSLLRQA 137
Query: 115 ---SPRLLPAFDTPTGIPFGSVNLLHGVDEHESKITSTAGGGTLTLEFGVLSRLTNDPIF 171
+ L AF TP+G+P +V V + + A G+L LE+ LS LT +P +
Sbjct: 138 QTLANGLKVAFTTPSGVPDPTVFFNPTVRRSGASSNNVAEIGSLVLEWTRLSDLTGNPQY 197
Query: 172 EQVTKKAVLGIWARRSK----LNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLL 227
Q+ +K + + L+G ++ G + +DSFYEYL+K YL
Sbjct: 198 AQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGTFQDSSGSWSGLMDSFYEYLIKMYLY 257
Query: 228 FGDEEYLYIFQESY----QAAMHYLFNDP-------WYVEVNMDSAAIVWPLFNSLQAFW 276
D +++ + + + +L + P + N S + P L +F
Sbjct: 258 --DPVAFAHYKDRWVLGADSTIGHLGSHPSTRKDLTFLSSYNGQSTS---PNSGHLASFG 312
Query: 277 PGLQVLAGD-------IDPAVRTHAAFFSVWKRY--GFTPEGFNLATLTIQQGQKS---- 323
G +L G ID ++ +++F + + G PEGF G
Sbjct: 313 GGNFILGGILLNEQKYIDFGIKLASSYFGTYTQTASGIGPEGFAWVDSVTGAGGSPPSSQ 372
Query: 324 ---------------YPLRPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCPCGYC 368
Y LRPE +ES Y Y+ T D ++ D + +++++ R Y
Sbjct: 373 SGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDLAWEALSAIEDACRAGSAYS 432
Query: 369 HISDVEFHK---KEDHMESFFLAETVKYLWLLFDLAVGPDNLVE-NGPYKYIFSTEGH 422
I+DV D MESF+ AE +KY +L+F A D V+ G K++F+TE H
Sbjct: 433 SINDVTQANGGGASDDMESFWFAEALKYAYLIF--AEESDVQVQATGGNKFVFNTEAH 488
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
Length = 1022
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 16/52 (30%)
Query: 472 GSWVHTGFPSDSF----------------LESTSVPGLIKGLCPGLTHGQKY 507
G+W H+GFP +F +E T P +++ C + H KY
Sbjct: 116 GNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKY 167
>pdb|4EFD|A Chain A, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|B Chain B, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|C Chain C, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|D Chain D, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|E Chain E, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|F Chain F, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
Length = 522
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 73 FTTSVEWIGKNLQFDINKTVSVFETTIRVLGGLLSAHLIARSSPRLLPAFDTPTGIPFGS 132
FT + K L FD++ + + R GG+ S A +PRL+ TP G P
Sbjct: 226 FTEIAQGYAKALGFDVD-VICGDDLCERGYGGIYSVGKAAFEAPRLVTLLYTPKGTPVKK 284
Query: 133 VNLL 136
V+L+
Sbjct: 285 VSLV 288
>pdb|2O01|A Chain A, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 754
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 249 FNDPWYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGDIDPAVR---THAAFFSVWKRYGF 305
NDP ++ SA +VWP+ G ++L GD+ R + FF +W+ G
Sbjct: 106 LNDPTHIG---PSAQVVWPIV--------GQEILNGDVGGGFRGIQITSGFFQIWRASGI 154
Query: 306 TPE 308
T E
Sbjct: 155 TSE 157
>pdb|2XQV|A Chain A, The X-Ray Structure Of The Zn(Ii) Bound Znua From
Salmonella Enterica
pdb|2XY4|A Chain A, X-Ray Structure Of Znua-Wt From Salmonella Enterica
Length = 288
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 293 HAAFFSVWKRYGFTPEGFNLATLTIQQG-QKSYPLRPELIESTYLLYKATRDPRYLDAGR 351
H A+ K YG TP G IQ G Q+ + +R +L+E A +P++ A
Sbjct: 185 HDAYGYYEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFA--EPQFRPAVV 242
Query: 352 DMVA---SLQYGTRCPCG 366
+ VA S++ GT P G
Sbjct: 243 EAVARGTSVRMGTLDPLG 260
>pdb|2WSC|A Chain A, Improved Model Of Plant Photosystem I
pdb|2WSE|A Chain A, Improved Model Of Plant Photosystem I
pdb|2WSF|A Chain A, Improved Model Of Plant Photosystem I
Length = 758
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 249 FNDPWYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGDIDPAVR---THAAFFSVWKRYGF 305
NDP ++ SA +VWP+ G ++L GD+ R + FF +W+ G
Sbjct: 110 LNDPTHIG---PSAQVVWPIV--------GQEILNGDVGGGFRGIQITSGFFQIWRASGI 158
Query: 306 TPE 308
T E
Sbjct: 159 TSE 161
>pdb|3LW5|A Chain A, Improved Model Of Plant Photosystem I
Length = 738
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 249 FNDPWYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGDIDPAVR---THAAFFSVWKRYGF 305
NDP ++ SA +VWP+ G ++L GD+ R + FF +W+ G
Sbjct: 90 LNDPTHIG---PSAQVVWPIV--------GQEILNGDVGGGFRGIQITSGFFQIWRASGI 138
Query: 306 TPE 308
T E
Sbjct: 139 TSE 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,470,929
Number of Sequences: 62578
Number of extensions: 810414
Number of successful extensions: 1475
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1403
Number of HSP's gapped (non-prelim): 29
length of query: 577
length of database: 14,973,337
effective HSP length: 104
effective length of query: 473
effective length of database: 8,465,225
effective search space: 4004051425
effective search space used: 4004051425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)