Query 047597
Match_columns 577
No_of_seqs 166 out of 1002
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 12:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00470 glycoside hydrolase f 100.0 7E-132 2E-136 1084.3 30.8 413 10-429 68-521 (522)
2 KOG2429 Glycosyl hydrolase, fa 100.0 8E-130 2E-134 1038.6 29.2 519 5-548 24-575 (622)
3 KOG2431 1, 2-alpha-mannosidase 100.0 2E-128 5E-133 999.7 26.8 411 11-428 91-544 (546)
4 PF01532 Glyco_hydro_47: Glyco 100.0 5E-126 1E-130 1031.3 16.4 400 21-426 1-452 (452)
5 KOG2204 Mannosyl-oligosacchari 100.0 4E-116 9E-121 934.1 24.6 412 9-426 170-624 (625)
6 KOG2430 Glycosyl hydrolase, fa 100.0 2.9E-96 6E-101 746.1 22.1 463 8-500 3-517 (587)
7 cd00249 AGE AGE domain; N-acyl 96.7 0.054 1.2E-06 57.5 15.8 254 97-364 54-341 (384)
8 KOG2204 Mannosyl-oligosacchari 96.6 0.076 1.6E-06 59.5 16.9 321 14-368 17-373 (625)
9 PF07944 DUF1680: Putative gly 96.5 0.018 3.9E-07 64.9 11.0 124 98-246 127-268 (520)
10 cd00249 AGE AGE domain; N-acyl 96.3 0.22 4.8E-06 52.9 17.5 200 154-364 57-278 (384)
11 PF07944 DUF1680: Putative gly 95.6 0.32 7E-06 54.9 16.1 269 109-399 19-316 (520)
12 PF07221 GlcNAc_2-epim: N-acyl 92.9 1 2.2E-05 47.7 11.6 233 158-399 29-289 (346)
13 PF07221 GlcNAc_2-epim: N-acyl 89.7 4.6 0.0001 42.7 12.6 206 157-372 88-324 (346)
14 COG1331 Highly conserved prote 87.8 0.92 2E-05 52.5 6.0 165 8-185 378-570 (667)
15 cd04791 LanC_SerThrkinase Lant 85.5 19 0.00042 37.1 14.0 154 159-373 92-249 (321)
16 PF07470 Glyco_hydro_88: Glyco 83.6 22 0.00047 37.5 13.6 34 331-364 130-163 (336)
17 COG1331 Highly conserved prote 83.1 22 0.00047 41.7 13.9 162 155-373 416-584 (667)
18 PTZ00470 glycoside hydrolase f 82.9 20 0.00043 40.9 13.5 173 171-360 72-257 (522)
19 PF07470 Glyco_hydro_88: Glyco 78.6 2.6 5.6E-05 44.5 4.5 80 160-249 77-161 (336)
20 PF06662 C5-epim_C: D-glucuron 76.1 11 0.00024 37.5 7.8 99 144-249 25-132 (189)
21 KOG1748 Acyl carrier protein/N 76.1 3.7 8.1E-05 38.4 4.2 61 15-84 51-127 (131)
22 PF06917 Pectate_lyase_2: Peri 64.8 4.7 0.0001 45.3 2.6 79 120-202 43-126 (557)
23 PF03663 Glyco_hydro_76: Glyco 62.0 19 0.0004 39.0 6.6 140 104-250 96-259 (370)
24 cd04792 LanM-like LanM-like pr 61.6 1.5E+02 0.0032 35.5 14.5 87 150-248 491-577 (825)
25 cd04791 LanC_SerThrkinase Lant 53.5 72 0.0016 32.9 9.0 88 154-247 143-232 (321)
26 COG3533 Uncharacterized protei 44.8 21 0.00045 40.5 3.5 61 101-178 136-206 (589)
27 PF12060 DUF3541: Domain of un 43.4 14 0.00031 37.3 1.8 29 320-357 28-56 (227)
28 TIGR02474 pec_lyase pectate ly 38.7 89 0.0019 33.2 6.9 92 156-250 47-148 (290)
29 COG3533 Uncharacterized protei 38.7 38 0.00083 38.5 4.3 46 300-354 162-207 (589)
30 PF01532 Glyco_hydro_47: Glyco 38.2 1.1E+02 0.0024 34.1 8.0 89 163-251 292-394 (452)
31 PF05426 Alginate_lyase: Algin 34.7 33 0.00071 34.8 2.9 31 333-363 64-94 (272)
32 PF03663 Glyco_hydro_76: Glyco 34.3 99 0.0021 33.5 6.7 37 329-365 224-261 (370)
33 COG4225 Predicted unsaturated 33.5 31 0.00067 37.4 2.5 39 333-371 87-126 (357)
34 PF10847 DUF2656: Protein of u 33.1 1.1E+02 0.0025 28.7 5.8 58 16-81 56-124 (132)
35 cd04792 LanM-like LanM-like pr 29.5 1E+03 0.022 28.4 15.7 178 155-363 592-785 (825)
36 cd04793 LanC LanC is the cycla 28.1 1.4E+02 0.003 32.0 6.6 80 157-249 251-330 (382)
37 PF06662 C5-epim_C: D-glucuron 25.7 83 0.0018 31.3 3.9 39 329-368 34-72 (189)
38 PF09492 Pec_lyase: Pectic aci 22.8 1.7E+02 0.0037 31.1 5.8 87 161-250 50-143 (289)
39 KOG2430 Glycosyl hydrolase, fa 21.8 54 0.0012 35.6 1.8 64 162-232 371-436 (587)
40 PF05227 CHASE3: CHASE3 domain 21.0 1.1E+02 0.0024 27.2 3.5 30 219-248 26-55 (138)
41 KOG2787 Lanthionine synthetase 21.0 74 0.0016 34.4 2.6 19 337-355 338-356 (403)
42 TIGR01561 gde_arch glycogen de 20.4 3.5E+02 0.0075 31.5 8.1 81 276-362 302-386 (575)
43 cd08639 DNA_pol_A_Aquificae_li 20.4 1.4E+02 0.003 32.1 4.6 111 61-176 1-132 (324)
44 COG5041 SKB2 Casein kinase II, 20.1 45 0.00097 33.8 0.8 49 66-114 53-107 (242)
No 1
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=100.00 E-value=7e-132 Score=1084.35 Aligned_cols=413 Identities=33% Similarity=0.547 Sum_probs=372.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCcCCCCCCCcceEEEeccchhhhcCChHHHHHHHHHHhhhccc--c
Q 047597 10 EARQLRDEVREMFYHAFDGYMEHAFPLDELRPLSCEGEDSLGGYALTLVDSLDTLALLGDRERFTTSVEWIGKNLQF--D 87 (577)
Q Consensus 10 ~~~~~r~~VK~aF~hAW~~Y~~~Awg~DEl~PlS~~~~d~~gg~g~TLVDSLDTL~IMGl~eEf~~A~~~V~~~l~F--~ 87 (577)
...+||++||+||+|||++|++||||||||+|+||+++|+ +|||+||||||||||||||++||++|++||.++++| +
T Consensus 68 ~~~~r~~~Vk~~F~haW~~Y~~~Awg~DEL~P~S~~~~~~-~g~g~TlVDSLDTL~IMgl~~Ef~~a~~~V~~~l~f~~~ 146 (522)
T PTZ00470 68 LNIKRRESVREAMKHAWEGYKEYAWGHDELRPLTKRHHEW-FGLGLTIIDSLDTLKIMGLKKEYKEGRDWVANNLKQSKD 146 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcCccceecCcCCccCC-CcchhHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC
Confidence 3457889999999999999999999999999999999885 579999999999999999999999999999988999 6
Q ss_pred ccccccceeehhhhcccchhhhhhcCc----------cCcccccccCCCCCCCCCcCCCCCCCCCC---Ccceecccccc
Q 047597 88 INKTVSVFETTIRVLGGLLSAHLIARS----------SPRLLPAFDTPTGIPFGSVNLLHGVDEHE---SKITSTAGGGT 154 (577)
Q Consensus 88 ~~~~VsvFETtIR~LGGLLSAY~LsgD----------ad~LlpAFdTpsGiP~~~vnl~~g~~~~~---~~~t~lAe~GS 154 (577)
.+..|||||||||+||||||||+||+| ||+|+||||||||||++.||+++|....+ ...+++||+||
T Consensus 147 ~~~~vsvFEttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gS 226 (522)
T PTZ00470 147 TGLGVSVFETTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGT 226 (522)
T ss_pred CCCeeeeeeeehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhh
Confidence 678999999999999999999999998 99999999999999999999999876543 35678999999
Q ss_pred chhchhhHHHhhCCchhHHHHHHHHHHHHhhhcc-CCeeeeeeeccCCceecccccccCCCchHHHhHHHHHhhcC--ch
Q 047597 155 LTLEFGVLSRLTNDPIFEQVTKKAVLGIWARRSK-LNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFG--DE 231 (577)
Q Consensus 155 l~LEF~~LS~lTGd~kY~~~a~~~~~~L~~~~~~-~GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYLLK~~lL~g--d~ 231 (577)
++|||++||++|||++|+++|+++++.||+.++. .||+|+.||+.+|+|++..++|||++|||||||||+|+|+| ++
T Consensus 227 l~LEF~~LS~lTGd~kY~~~a~~i~~~l~~~~~~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~d~ 306 (522)
T PTZ00470 227 LQLEFNYLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGREE 306 (522)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCCCCCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCCcH
Confidence 9999999999999999999999999999998877 79999999999999999999999999999999999999997 56
Q ss_pred HHHHHHHHHHHHHHhhcccCC--cceEeccCCCccccccccccccccccchhhcCCC-------------ChHHHHHHHH
Q 047597 232 EYLYIFQESYQAAMHYLFNDP--WYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGDI-------------DPAVRTHAAF 296 (577)
Q Consensus 232 ~~~~~y~~a~~ai~~~L~~~p--~~~~~~~~sg~~~~~~~dhL~CF~pGmlaLgg~~-------------~~a~~~~~~~ 296 (577)
+|++||.+|+++|++||+.++ .+..+....|....++|+||+||+|||++|||.. +.|.+....|
T Consensus 307 ~~~~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC 386 (522)
T PTZ00470 307 RYRRLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTC 386 (522)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHH
Confidence 799999999999999998642 3333444556677899999999999999999942 1245556677
Q ss_pred HHHHh--hhCCCCCccccCcc----ccccCCCccCCchhHHHHHHHHHHHcCChhHHHHHHHHHHHHhHhcccCCccccc
Q 047597 297 FSVWK--RYGFTPEGFNLATL----TIQQGQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCPCGYCHI 370 (577)
Q Consensus 297 ~~~~~--~~Gl~PE~f~~~~~----~~~~~~~~Y~LRPE~IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt~~Gya~i 370 (577)
+..|. ++|++||+|.|..+ .+...+++|+||||+|||+|||||+|||++||||||+||++|+++|||+|||++|
T Consensus 387 ~~~Y~~~~tGl~PE~~~~~~~~~~~~~~~~d~~Y~LRPE~iES~fylyR~TgD~~yre~gW~~f~ai~k~~rt~~Gya~i 466 (522)
T PTZ00470 387 YETYATSPTGLGPEIFHFDPNSGDISPNVHDSHYILRPETVESIFILYRLTGDPKYREWAWKIFQAIEKHCKTENGYSGL 466 (522)
T ss_pred HHHHHhcccCCCCceEEeccCccccccccCCCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 76664 68999999998753 2345689999999999999999999999999999999999999999999999999
Q ss_pred ccccc--CCCCCCcchHHHHHHHHHHHhHhccCCCCCCcccCCCCcEEecCCCccCCCCCC
Q 047597 371 SDVEF--HKKEDHMESFFLAETVKYLWLLFDLAVGPDNLVENGPYKYIFSTEGHLLPATPQ 429 (577)
Q Consensus 371 ~dV~~--~~~~D~mESFflAETLKYLYLLFsd~~~~d~~~~~~ld~~VFNTEaHPl~i~~~ 429 (577)
+||+. +.++|+|||||||||||||||||+| +++++ +|+||||||||||||.+.
T Consensus 467 ~dV~~~~~~~~D~MeSFflaETLKYlYLlFsd----~~~i~--ld~~VFnTEAHPl~i~~~ 521 (522)
T PTZ00470 467 KNVLTVHPQQDDFQESFFLAETLKYLYLLFQP----DHVIP--LDKYVFNTEAHPIPIQKT 521 (522)
T ss_pred cccCCCCCCcCCcccchhHHHHHHHHHheecC----ccccc--cCCeEECCCCceeecCCC
Confidence 99997 5789999999999999999999995 34665 689999999999999764
No 2
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.3e-130 Score=1038.59 Aligned_cols=519 Identities=52% Similarity=0.874 Sum_probs=456.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCcC-----CCCCCCcceEEEeccchhhhcCChHHHHHHHHH
Q 047597 5 GVTAEEARQLRDEVREMFYHAFDGYMEHAFPLDELRPLSCEG-----EDSLGGYALTLVDSLDTLALLGDRERFTTSVEW 79 (577)
Q Consensus 5 ~~~~~~~~~~r~~VK~aF~hAW~~Y~~~Awg~DEl~PlS~~~-----~d~~gg~g~TLVDSLDTL~IMGl~eEf~~A~~~ 79 (577)
+..+...++.|++||+||+|||++||+||||+|||+||||.| +|.+|++.+|||||||||.|||..+||++||+|
T Consensus 24 ~~~~~~~~~~Re~vr~MFyhayDnYm~hAFP~DEL~PltC~g~~~~~~D~~G~ysLtLIDaLdTLailGn~~eF~raV~l 103 (622)
T KOG2429|consen 24 GSIASKKKQYREEVREMFYHAYDNYMEHAFPYDELKPLTCVGRGPGVNDTLGSYSLTLIDALDTLAILGNRTEFQRAVRL 103 (622)
T ss_pred ccccccHHHHHHHHHHHHHHhhhhHhhccCCccccCcceecCCCCCccccccccchhhHHHhhHHHHhCChHHHHHHHHH
Confidence 445555688999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred Hhhhccccccccccceeehhhhcccchhhhhhc-Cc---------------------cCcccccccCCCCCCCCCcCCCC
Q 047597 80 IGKNLQFDINKTVSVFETTIRVLGGLLSAHLIA-RS---------------------SPRLLPAFDTPTGIPFGSVNLLH 137 (577)
Q Consensus 80 V~~~l~F~~~~~VsvFETtIR~LGGLLSAY~Ls-gD---------------------ad~LlpAFdTpsGiP~~~vnl~~ 137 (577)
|.++++||+|.+|||||||||+||||||||.|+ .+ |+||||||+|||||||++||+++
T Consensus 104 v~~~~~Fd~d~~VqVFEttIRVlGGLLSAHllA~~~~~~~~~~~~y~g~LLrLA~dlA~RLLPAF~T~TGiPy~~vNLk~ 183 (622)
T KOG2429|consen 104 VIETVSFDIDSTVQVFETTIRVLGGLLSAHLLAKKDPVGVFLGPDYDGELLRLAEDLARRLLPAFETPTGIPYGRVNLKY 183 (622)
T ss_pred HHhhCCcccCCeeEEEEEehhhhhhHHHHHHhhccCccCccccCCCCchHHHHHHHHHHhhcccccCCCCCCcceeehhc
Confidence 999999999999999999999999999999999 33 99999999999999999999999
Q ss_pred CCCCCCCcceeccccccchhchhhHHHhhCCchhHHHHHHHHHHHHhhhccCCeeeeeeeccCCceecccccccCCCchH
Q 047597 138 GVDEHESKITSTAGGGTLTLEFGVLSRLTNDPIFEQVTKKAVLGIWARRSKLNLVGAHINVFTGEWTQKDAGIGTSIDSF 217 (577)
Q Consensus 138 g~~~~~~~~t~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~~~~~L~~~~~~~GL~p~~i~~~tG~~~~~~~~lGa~~DSy 217 (577)
|+.+++.+++|+|.+||+.|||..||+|||||+|+++|++|.+.||+.|+..||+|++||+.||+|+....++||+.|||
T Consensus 184 GV~~~Et~~tctAg~gslllEFg~LSrLTGD~~fE~vA~~A~~~lW~~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSf 263 (622)
T KOG2429|consen 184 GVDKGETTETCTAGAGSLLLEFGTLSRLTGDPKFEKVARRALDALWSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSF 263 (622)
T ss_pred CCCCCCCcceecccccceeeehhhhHHhhCCcHHHHHHHHHHHHHHhhcCCCCcccceeeccccceeccccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCcceEeccCCCccccccccccccccccchhhcCCCChHHHHHHHHH
Q 047597 218 YEYLLKAYLLFGDEEYLYIFQESYQAAMHYLFNDPWYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGDIDPAVRTHAAFF 297 (577)
Q Consensus 218 YEYLLK~~lL~gd~~~~~~y~~a~~ai~~~L~~~p~~~~~~~~sg~~~~~~~dhL~CF~pGmlaLgg~~~~a~~~~~~~~ 297 (577)
||||+|.|||+|++++++||++|++++++|+++++||++++|.+|.+..|++++|++||||+++|.|++++|+++|..|+
T Consensus 264 yEYllK~yILfgd~e~lemf~ea~~ai~~y~r~~~wY~~V~m~~G~v~~p~~dSLqAfwpGlqvLaGDvd~A~~~h~~y~ 343 (622)
T KOG2429|consen 264 YEYLLKGYILFGDPELLEMFNEAYEAIQKYTRKGPWYVNVNMDSGSVSLPWFDSLQAFWPGLQVLAGDVDDAIRTHLMYF 343 (622)
T ss_pred HHHHHHHheecCCHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCCceehHHHhhHHhhccchhhhhcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCccccCccccccCCCccCCchhHHHHHHHHHHHcCChhHHHHHHHHHHHHhHhcccCCccccccccccCC
Q 047597 298 SVWKRYGFTPEGFNLATLTIQQGQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCPCGYCHISDVEFHK 377 (577)
Q Consensus 298 ~~~~~~Gl~PE~f~~~~~~~~~~~~~Y~LRPE~IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt~~Gya~i~dV~~~~ 377 (577)
++|++||..||++++....++.....|+||||+|||.|||||+|+||.|++.|-+|.++||+++|++||||+|+||.+++
T Consensus 344 ~vwkkyG~lPEryN~~~~~~~~~~~~YPLRPElvEStyyLYrATkdp~yL~vG~~~l~sLe~~~k~~CGfAti~nV~~~~ 423 (622)
T KOG2429|consen 344 SVWKKYGFLPERYNLATQEPPPKREGYPLRPELVESTYYLYRATKDPFYLHVGEDMLKSLEKYTKVKCGFATIRNVITHS 423 (622)
T ss_pred HHHHHcCCCcccccccCCCCCCCcccCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCccceeeeehhhcc
Confidence 99999999999999998887778889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHhHhccCCCCCCcccCCCCcEEecCCCccCCCCCC---CcccccccccccccccCCCCC--CC
Q 047597 378 KEDHMESFFLAETVKYLWLLFDLAVGPDNLVENGPYKYIFSTEGHLLPATPQ---ISLKREHCSYFGAYCKDSDSK--QG 452 (577)
Q Consensus 378 ~~D~mESFflAETLKYLYLLFsd~~~~d~~~~~~ld~~VFNTEaHPl~i~~~---~~l~~~~~~~~~~~~~~~~~~--~~ 452 (577)
.+|+|||||||||+|||||||++ .+.+...+.+.++|+|||||++|.+. ....+.+|...|..|++.+-+ +.
T Consensus 424 ledrMESFFLaET~KYLYLLFD~---~n~ih~~g~~~~ifsTEgh~~~v~~~~~~~~t~a~~~d~~~~~c~s~~~~~e~~ 500 (622)
T KOG2429|consen 424 LEDRMESFFLAETLKYLYLLFDD---DNPIHNSGSDSVIFSTEGHLFPVTQAGYIFNTEAHPIDPGGLHCPSISTKKEQE 500 (622)
T ss_pred hHHHHHHHHHHHHHhHHheeecC---CchhhccCCceeEEeeCCcceeecccccccCCCCCcCCccccccchhhhhhHHh
Confidence 99999999999999999999985 33444455556999999999999984 777889999999999974422 11
Q ss_pred cccCCCCCCCcccCCCcccCccccCCCCCCCcccccccCcceeeccCCccccceeeeeeccccCCCCCCCCCC-CCCCCC
Q 047597 453 SETSGVSADPQETNGSKFYGSWVHTGFPSDSFLESTSVPGLIKGLCPGLTHGQKYGITYLPLVDTAPEDVSPT-QKEPSQ 531 (577)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 531 (577)
....+....+ . +... + .....+--..+.++||..+ +.|..+..++....+....+ +++
T Consensus 501 ~~~~~~~~~~----------~--~~~~-~--~h~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~--- 559 (622)
T KOG2429|consen 501 VTGEDLQNGR----------P--SAKY-S--RHKEGPKVIAIDSLLEDCN---LPGTCFIPKEHKEGEERKYSLEKE--- 559 (622)
T ss_pred hhhhhhccCC----------h--hhhc-c--cccccccccccccccCCCC---cCcccccccccchhhhhcccchhc---
Confidence 1111111110 0 0000 0 1111223346677777777 88988888887644443322 222
Q ss_pred CceeeeeeEEEEecCCC
Q 047597 532 PTVVQSHSVVVVSDQGA 548 (577)
Q Consensus 532 ~~~~~~~~~~~~~~~~~ 548 (577)
.+...+++++.+++..
T Consensus 560 -~~~~~s~~~~~~~~~~ 575 (622)
T KOG2429|consen 560 -VLRTCSSLVMPSDIEN 575 (622)
T ss_pred -cccccCcceehhhhhH
Confidence 3444555666655543
No 3
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-128 Score=999.68 Aligned_cols=411 Identities=36% Similarity=0.591 Sum_probs=374.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCcCCCCCCCcceEEEeccchhhhcCChHHHHHHHHHHhhhccccccc
Q 047597 11 ARQLRDEVREMFYHAFDGYMEHAFPLDELRPLSCEGEDSLGGYALTLVDSLDTLALLGDRERFTTSVEWIGKNLQFDINK 90 (577)
Q Consensus 11 ~~~~r~~VK~aF~hAW~~Y~~~Awg~DEl~PlS~~~~d~~gg~g~TLVDSLDTL~IMGl~eEf~~A~~~V~~~l~F~~~~ 90 (577)
+.+||++|++||+|||.+|+|||||||||+|+|+.++|+|| .|+||||||||++||||.+||++|++||.++++|+++.
T Consensus 91 ~nerq~avv~aF~haW~gYkKyawGhD~l~Pvs~~~~d~fg-lGltiVDslDT~~iMgle~e~~ea~~Wv~~~L~f~~~~ 169 (546)
T KOG2431|consen 91 LNERQKAVVDAFLHAWSGYKKYAWGHDELKPVSQSFSDWFG-LGLTIVDSLDTAMIMGLEDEFEEAREWVEKKLHFEKDR 169 (546)
T ss_pred hhHHHHHHHHHHHHHHhhhhhhcccccccccchhccccccc-ccceEEechhHHHHhhhHHHHHHHHHHHHhhccccccc
Confidence 67889999999999999999999999999999999999995 99999999999999999999999999999999999999
Q ss_pred cccceeehhhhcccchhhhhhcCc----------cCcccccccCCCCCCCCCcCCCCCCCCCC--Ccceeccccccchhc
Q 047597 91 TVSVFETTIRVLGGLLSAHLIARS----------SPRLLPAFDTPTGIPFGSVNLLHGVDEHE--SKITSTAGGGTLTLE 158 (577)
Q Consensus 91 ~VsvFETtIR~LGGLLSAY~LsgD----------ad~LlpAFdTpsGiP~~~vnl~~g~~~~~--~~~t~lAe~GSl~LE 158 (577)
.||+||||||+||||||||+|||+ ||||+|||.+||+|||+.||+.+|....+ ...+++||+.|+|||
T Consensus 170 ~VNlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlE 249 (546)
T KOG2431|consen 170 DVNLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLE 249 (546)
T ss_pred ceehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchhhheeeeee
Confidence 999999999999999999999998 99999999999999999999998875433 367899999999999
Q ss_pred hhhHHHhhCCchhHHHHHHHHHHHHhhhcc--CCeeeeeeeccCCceecccccccCCCchHHHhHHHHHhhcCch--HHH
Q 047597 159 FGVLSRLTNDPIFEQVTKKAVLGIWARRSK--LNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFGDE--EYL 234 (577)
Q Consensus 159 F~~LS~lTGd~kY~~~a~~~~~~L~~~~~~--~GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYLLK~~lL~gd~--~~~ 234 (577)
|++||++|||+||+++|.+++++|...... .||+|++||+.||.|.+..+++|+.||||||||||+||++|.. .++
T Consensus 250 fr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi~in~~tG~F~~~tI~lGaRgDSyYEYLlKQwlQtg~~~~~l~ 329 (546)
T KOG2431|consen 250 FRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPIFINPNTGLFVGSTITLGARGDSYYEYLLKQWLQTGKSLTYLR 329 (546)
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeeeEEEcCCCCccccceEEeccccchHHHHHHHHHHHcccchhHHH
Confidence 999999999999999999999999987544 5999999999999999999999999999999999999999974 577
Q ss_pred HHHHHHHHHHHhhcccC--C---cceEeccCCCccccccccccccccccchhhcCC---------CChHHHHHHHHHHHH
Q 047597 235 YIFQESYQAAMHYLFND--P---WYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGD---------IDPAVRTHAAFFSVW 300 (577)
Q Consensus 235 ~~y~~a~~ai~~~L~~~--p---~~~~~~~~sg~~~~~~~dhL~CF~pGmlaLgg~---------~~~a~~~~~~~~~~~ 300 (577)
++|.+|++++++||++. | +|+ -....|..+.|+||||.||+||+|+||+. ++-|.+..+.|++++
T Consensus 330 ~dy~~am~gv~~~Llr~S~P~~~~fi-GEl~~G~~fsPKMDHLVCFlpGtL~lG~~~Gl~~~~~hl~lA~~l~~TCyqMY 408 (546)
T KOG2431|consen 330 DDYIEAMEGVRKHLLRQSKPNKLWFI-GELPHGLQFSPKMDHLVCFLPGTLALGSTNGLPASEEHLELAQELMETCYQMY 408 (546)
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEE-EecccccccCcccceEEEeecchhhhccccCCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999853 3 443 12335778899999999999999999973 234666778888888
Q ss_pred h--hhCCCCCccccCc--------cccccCCCccCCchhHHHHHHHHHHHcCChhHHHHHHHHHHHHhHhcccCC-cccc
Q 047597 301 K--RYGFTPEGFNLAT--------LTIQQGQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCPC-GYCH 369 (577)
Q Consensus 301 ~--~~Gl~PE~f~~~~--------~~~~~~~~~Y~LRPE~IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt~~-Gya~ 369 (577)
+ .+|++||++.|.. ..+++.|++++||||+|||+|||||+|||.|||||||+||+++++++|+++ ||++
T Consensus 409 ~~~~TGLaPEIv~Fn~~~~~~~~DiyvKp~D~HnLlRPEtVESlfylYriT~D~kYqewGW~if~sfekytrv~~ggytS 488 (546)
T KOG2431|consen 409 RQNPTGLAPEIVHFNLYPQPGKNDIYVKPLDRHNLLRPETVESLFYLYRITGDRKYQEWGWEIFQSFEKYTRVPSGGYTS 488 (546)
T ss_pred ccCcCCCCceEEEEeccCCCccCceeeccchhhcccChHHHhhhheeeEecCCchHHHHhHHHHHHHHHhcccCCCCccc
Confidence 5 5899999977742 236778999999999999999999999999999999999999999999997 9999
Q ss_pred cccccc--CCCCCCcchHHHHHHHHHHHhHhccCCCCCCcccCCCCcEEecCCCccCCCCC
Q 047597 370 ISDVEF--HKKEDHMESFFLAETVKYLWLLFDLAVGPDNLVENGPYKYIFSTEGHLLPATP 428 (577)
Q Consensus 370 i~dV~~--~~~~D~mESFflAETLKYLYLLFsd~~~~d~~~~~~ld~~VFNTEaHPl~i~~ 428 (577)
|.||.+ ++++|+|||||||||||||||||+| +.++++ +|+||||||||||||.+
T Consensus 489 i~nV~~~~~~~RDkMESF~laETLKYLYLLf~D---D~~ilp--Ldk~VFNTEaHPlPi~~ 544 (546)
T KOG2431|consen 489 IDNVKDQKPKRRDKMESFWLAETLKYLYLLFSD---DQSILP--LDKWVFNTEAHPLPIYD 544 (546)
T ss_pred hhhhhhcCCchhhhHHHHHHHHHHHHHHHhhcC---Cccccc--chheEeccCCCCCCCCC
Confidence 999987 4689999999999999999999996 346776 79999999999999975
No 4
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=100.00 E-value=4.5e-126 Score=1031.26 Aligned_cols=400 Identities=45% Similarity=0.733 Sum_probs=338.3
Q ss_pred HHHHHHHHHHHhcCCCCcccccCCcCCCCCCCcceEEEeccchhhhcCChHHHHHHHHHHhhhccccccc-cccceeehh
Q 047597 21 MFYHAFDGYMEHAFPLDELRPLSCEGEDSLGGYALTLVDSLDTLALLGDRERFTTSVEWIGKNLQFDINK-TVSVFETTI 99 (577)
Q Consensus 21 aF~hAW~~Y~~~Awg~DEl~PlS~~~~d~~gg~g~TLVDSLDTL~IMGl~eEf~~A~~~V~~~l~F~~~~-~VsvFETtI 99 (577)
||+|||++|++||||||||+|+|++++|++||||+||||||||||||||++||++|++||.++++|+.+. .||||||||
T Consensus 1 ~f~~a~~~Y~~~A~g~Del~P~s~~~~~~~~g~~~TlvDSLdTL~imgl~~ef~~a~~~v~~~~~f~~~~~~vs~fEt~i 80 (452)
T PF01532_consen 1 MFRHAWNGYKKYAWGHDELRPLSGSGSDSFGGWGATLVDSLDTLYIMGLKDEFNEAVDWVSNNLDFDQDDSTVSVFETTI 80 (452)
T ss_dssp HHHHHHHHHHHHTTTSSEEETTTTEEE-SSTTS-HHHHHHHHHHHHHTHHHHHHHHHHHHHHC--TTSSSSEEEHHHHHH
T ss_pred ChhHHHHHHHHhcCCccccccccCCCCCccccccceeeeeccceeecCCHHHHHHHHHHHHhhcCcCccceeechHHhhh
Confidence 8999999999999999999999999999999999999999999999999999999999999889999887 799999999
Q ss_pred hhcccchhhhhhc--Cc----------cCcccccccCCCCCCCCCcCCCCCCC-CCCCcceeccccccchhchhhHHHhh
Q 047597 100 RVLGGLLSAHLIA--RS----------SPRLLPAFDTPTGIPFGSVNLLHGVD-EHESKITSTAGGGTLTLEFGVLSRLT 166 (577)
Q Consensus 100 R~LGGLLSAY~Ls--gD----------ad~LlpAFdTpsGiP~~~vnl~~g~~-~~~~~~t~lAe~GSl~LEF~~LS~lT 166 (577)
|+||||||||+|| +| ||+|+||||||+|||+++||++++.. ......+++||+||++|||++||++|
T Consensus 81 R~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lT 160 (452)
T PF01532_consen 81 RVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLT 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHh
Confidence 9999999999999 77 99999999999999999999977443 23444678999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHh--hhc-cCCeeeeeeeccCCceecccccccCCCchHHHhHHHHHhhcC--chHHHHHHHHHH
Q 047597 167 NDPIFEQVTKKAVLGIWA--RRS-KLNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFG--DEEYLYIFQESY 241 (577)
Q Consensus 167 Gd~kY~~~a~~~~~~L~~--~~~-~~GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYLLK~~lL~g--d~~~~~~y~~a~ 241 (577)
||+||+++|+++++.|++ .+. .+||+|..||+.+|+|++..+++|+++|||||||||+|+|+| ++++++||++++
T Consensus 161 gd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~~a~ 240 (452)
T PF01532_consen 161 GDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYDEAV 240 (452)
T ss_dssp S-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHHHHH
Confidence 999999999999999999 443 689999999999999999999999999999999999999999 788999999999
Q ss_pred HHHHhhcccCCcc------eEeccC---CCccccccccccccccccchhhc-------CCCChHHHHHHHHHHHHhhh--
Q 047597 242 QAAMHYLFNDPWY------VEVNMD---SAAIVWPLFNSLQAFWPGLQVLA-------GDIDPAVRTHAAFFSVWKRY-- 303 (577)
Q Consensus 242 ~ai~~~L~~~p~~------~~~~~~---sg~~~~~~~dhL~CF~pGmlaLg-------g~~~~a~~~~~~~~~~~~~~-- 303 (577)
++|++||+++|.. ..+.+. .+.+..++|+||+||+|||++|| ++++.|.+.+..|+.+|+.+
T Consensus 241 ~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~~~~~~~~A~~l~~~C~~~y~~~~t 320 (452)
T PF01532_consen 241 DAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFNDEGDLELAEELTETCYWLYKSTPT 320 (452)
T ss_dssp HHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccCchhHHHHHHHHHHHHHHHHHhccc
Confidence 9999999865321 223332 34567899999999999999999 45567888999999999976
Q ss_pred CCCCCccccCccc-------------cccCCCccCCchhHHHHHHHHHHHcCChhHHHHHHHHHHHHhHhcccCCccccc
Q 047597 304 GFTPEGFNLATLT-------------IQQGQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCPCGYCHI 370 (577)
Q Consensus 304 Gl~PE~f~~~~~~-------------~~~~~~~Y~LRPE~IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt~~Gya~i 370 (577)
|++||+|++..+. +.+.+++|+||||+|||+|||||+||||+||||||+||++|+++||++|||++|
T Consensus 321 Gl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~k~~r~~~G~a~i 400 (452)
T PF01532_consen 321 GLGPEIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDIFQAIEKYCRTECGYAGI 400 (452)
T ss_dssp SS--SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHHHHHHHHTEETTEE--B
T ss_pred CCCceEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHHHHHHHHhcccceehhhh
Confidence 9999999998631 234678999999999999999999999999999999999999999999999999
Q ss_pred cccc--cCCCCCCcchHHHHHHHHHHHhHhccCCCCCCcccCCCCcEEecCCCccCCC
Q 047597 371 SDVE--FHKKEDHMESFFLAETVKYLWLLFDLAVGPDNLVENGPYKYIFSTEGHLLPA 426 (577)
Q Consensus 371 ~dV~--~~~~~D~mESFflAETLKYLYLLFsd~~~~d~~~~~~ld~~VFNTEaHPl~i 426 (577)
+||+ .++++|+|||||||||||||||||+| ++ .++ +|+||||||||||||
T Consensus 401 ~dv~~~~~~~~D~meSf~laETlKYlYLlFsd---~~-~~~--ld~~VfnTeaHpl~i 452 (452)
T PF01532_consen 401 KDVTSDPPQKDDRMESFFLAETLKYLYLLFSD---PD-VIS--LDEYVFNTEAHPLRI 452 (452)
T ss_dssp SETTSSSSCBBS-B-CHHHHTHHHHHHHHTSS---TT-TTS--TTSEEE-TTS-EEE-
T ss_pred cccCcCCcccCCCccceehHhhhHHHHhhcCC---cc-cCC--CCCEEECCCCCccCC
Confidence 9999 57899999999999999999999996 33 454 699999999999987
No 5
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-116 Score=934.12 Aligned_cols=412 Identities=36% Similarity=0.517 Sum_probs=366.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCcC--CCCCC--CcceEEEeccchhhhcCChHHHHHHHHHHhhhc
Q 047597 9 EEARQLRDEVREMFYHAFDGYMEHAFPLDELRPLSCEG--EDSLG--GYALTLVDSLDTLALLGDRERFTTSVEWIGKNL 84 (577)
Q Consensus 9 ~~~~~~r~~VK~aF~hAW~~Y~~~Awg~DEl~PlS~~~--~d~~g--g~g~TLVDSLDTL~IMGl~eEf~~A~~~V~~~l 84 (577)
...+++|++||+||+|||++|++||||+|||+|+||++ .+-|| ..|+||||||||||||||++||++|++||+.++
T Consensus 170 ~~~~~rrekVkemm~hAw~~Yk~yawg~neLrp~sk~g~s~~ifG~~~~GATIvDslDTlyim~l~~e~qEar~wi~~~~ 249 (625)
T KOG2204|consen 170 NKYRERREKVKEMMKHAWNNYKKYAWGKNELRPSSKQGHSSSIFGAHLKGATIVDSLDTLYIMGLKEEFQEARDWIAYNL 249 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcccccccCccccCCccccccccCcCCchHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 44568999999999999999999999999999999999 45677 489999999999999999999999999999999
Q ss_pred ccc-ccccccceeehhhhcccchhhhhhcCc----------cCcccccccCCCCCCCCCcCCCCCCCCCCC----cceec
Q 047597 85 QFD-INKTVSVFETTIRVLGGLLSAHLIARS----------SPRLLPAFDTPTGIPFGSVNLLHGVDEHES----KITST 149 (577)
Q Consensus 85 ~F~-~~~~VsvFETtIR~LGGLLSAY~LsgD----------ad~LlpAFdTpsGiP~~~vnl~~g~~~~~~----~~t~l 149 (577)
+|+ .+..+||||||||++|||||||.|||| ||+|||||+||+|||+..+|.++|...+.. ..+.+
T Consensus 250 ~~~~v~~~~SvFE~NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG~~~n~~wasgg~SIL 329 (625)
T KOG2204|consen 250 DFKTVPIELSVFETNIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSGDADNYGWASGGSSIL 329 (625)
T ss_pred ccccccchhheeeeeeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccCccCCcccccCcchHh
Confidence 998 788999999999999999999999999 999999999999999999999999765432 24568
Q ss_pred cccccchhchhhHHHhhCCchhHHHHHHHHHHHHhhhccCCeeeeeeeccCCceecccccccCCCchHHHhHHHHHhhcC
Q 047597 150 AGGGTLTLEFGVLSRLTNDPIFEQVTKKAVLGIWARRSKLNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFG 229 (577)
Q Consensus 150 Ae~GSl~LEF~~LS~lTGd~kY~~~a~~~~~~L~~~~~~~GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYLLK~~lL~g 229 (577)
||.||++|||.+||++||||+|.++++++.+.|-+.....||.|++|+|.+|+|.+...++|+.+|||||||+|.|++++
T Consensus 330 aE~gtlhlef~~LS~ltg~P~~~ekv~~IRk~l~k~ekP~GLypnYinP~sg~wgq~~tslg~lgDSfyeyllK~wl~s~ 409 (625)
T KOG2204|consen 330 AEFGTLHLEFSYLSKLTGNPTFAEKVVKIRKVLNKSEKPHGLYPNYINPSSGEWGQHHTSLGALGDSFYEYLLKAWLQSD 409 (625)
T ss_pred hhcCceeeehHHhhhccCCchHHHHHHHHHHHHHhhcCCCCCCcccccCCCCchhhHHhHHhhhhhhHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999988877789999999999999999999999999999999999999998
Q ss_pred --chHHHHHHHHHHHHHHhhcccC--C-cceEeccCCCccccccccccccccccchhhcCCCCh-----------HHHHH
Q 047597 230 --DEEYLYIFQESYQAAMHYLFND--P-WYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGDIDP-----------AVRTH 293 (577)
Q Consensus 230 --d~~~~~~y~~a~~ai~~~L~~~--p-~~~~~~~~sg~~~~~~~dhL~CF~pGmlaLgg~~~~-----------a~~~~ 293 (577)
|.+++.||.+++.++.+||++. + ....+.-+.+....++|+||+||.|||+|||+.-.. +.+..
T Consensus 410 kTd~eak~my~~am~Ai~~~li~~S~~s~ltyi~e~~~g~lehKm~hlacf~gGm~algA~~~~~~~~~~~y~el~~eia 489 (625)
T KOG2204|consen 410 KTDCEAKGMYEDAMIAIEKYLIFKSDGSGLTYISEWNGGGLEHKMGHLACFAGGMFALGAIKGDTVGSSKHYLELGGEIA 489 (625)
T ss_pred CcchHHHHhHHHHHHHHHhhheeccCCCCeEEEEecCCCchhhhhchhhcccccceeeccccCCCcchhHHHHHHhHHHH
Confidence 4689999999999999999852 2 222233345667789999999999999999973211 22233
Q ss_pred HHHHHHHh--hhCCCCCccccCcc----ccccCCCccCCchhHHHHHHHHHHHcCChhHHHHHHHHHHHHhHhcccCCcc
Q 047597 294 AAFFSVWK--RYGFTPEGFNLATL----TIQQGQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCPCGY 367 (577)
Q Consensus 294 ~~~~~~~~--~~Gl~PE~f~~~~~----~~~~~~~~Y~LRPE~IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt~~Gy 367 (577)
..|.+.|. .++++||.|.|... .++.....|+||||+|||+|||||+|||+|||+|||+.|||||++||+..||
T Consensus 490 ~TchesY~rt~T~lgpesf~fn~~~ea~~~r~~EsyyILrpEviEs~fYlwRlT~d~kyR~wgweavqalek~cr~~~G~ 569 (625)
T KOG2204|consen 490 TTCHESYTRTTTKLGPESFWFNHGVEAFAVRKVESYYILRPEVIESYFYLWRLTGDQKYRSWGWEAVQALEKYCRVAKGY 569 (625)
T ss_pred HHHHHHHhccccccChhhhcccCccchhhhhcccceeecCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcccccch
Confidence 45655555 57999999998753 2344678899999999999999999999999999999999999999999999
Q ss_pred cccccccc--CCCCCCcchHHHHHHHHHHHhHhccCCCCCCcccCCCCcEEecCCCccCCC
Q 047597 368 CHISDVEF--HKKEDHMESFFLAETVKYLWLLFDLAVGPDNLVENGPYKYIFSTEGHLLPA 426 (577)
Q Consensus 368 a~i~dV~~--~~~~D~mESFflAETLKYLYLLFsd~~~~d~~~~~~ld~~VFNTEaHPl~i 426 (577)
++|+||.. +.++|.|+||||||||||||||||| +++++ ||+||||||||||||
T Consensus 570 ~glkdvY~~~~~~ddvqqSFflAEtLKYlyLlFSd----ddlls--LD~wVFNteAHplpi 624 (625)
T KOG2204|consen 570 SGLKDVYESGPKVDDVQQSFFLAETLKYLYLLFSD----DDLLS--LDKWVFNTEAHPLPI 624 (625)
T ss_pred hhhhHhhhCCCcccchHHHHHHHHHHHHHhheecC----CCccc--HHHhhhccCCcccCC
Confidence 99999987 6799999999999999999999995 56776 699999999999998
No 6
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-96 Score=746.14 Aligned_cols=463 Identities=42% Similarity=0.776 Sum_probs=401.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCcCC------------CCCCCcceEEEeccchhhhcCChHHHHH
Q 047597 8 AEEARQLRDEVREMFYHAFDGYMEHAFPLDELRPLSCEGE------------DSLGGYALTLVDSLDTLALLGDRERFTT 75 (577)
Q Consensus 8 ~~~~~~~r~~VK~aF~hAW~~Y~~~Awg~DEl~PlS~~~~------------d~~gg~g~TLVDSLDTL~IMGl~eEf~~ 75 (577)
.++.+.+.+++-+||.|||++||+||||.|||.|+||+|+ |..|.+++|||||||||.+|+..+||++
T Consensus 3 ~~dkkkl~~e~~dmf~h~y~nyme~a~padelmplsckgrirg~~psrgdvddalgkfsltlidsldtlvvln~~~efe~ 82 (587)
T KOG2430|consen 3 EEDKKKLGKEALDMFDHAYGNYMEHAFPADELMPLSCKGRIRGQEPSRGDVDDALGKFSLTLIDSLDTLVVLNELDEFED 82 (587)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhccCchhhcccccccceecCcCCCCCchhhhhcceeeeeeccccceeeccchHHHHH
Confidence 4556667789999999999999999999999999999985 4577899999999999999999999999
Q ss_pred HHHHHhhhccccccccccceeehhhhcccchhhhhhcC-------c----------------cCcccccccCCCCCCCCC
Q 047597 76 SVEWIGKNLQFDINKTVSVFETTIRVLGGLLSAHLIAR-------S----------------SPRLLPAFDTPTGIPFGS 132 (577)
Q Consensus 76 A~~~V~~~l~F~~~~~VsvFETtIR~LGGLLSAY~Lsg-------D----------------ad~LlpAFdTpsGiP~~~ 132 (577)
|++-|.++++|+.+..||||||+||+|||||+||.|.. + |.+|||||+|.+|+|+++
T Consensus 83 ai~~vik~v~~dnd~vvsvfetnirvlggli~~h~la~llk~e~~e~lq~y~dellkmakelg~kllpafnttsglp~~r 162 (587)
T KOG2430|consen 83 AIDKVIKDVNFDNDHVVSVFETNIRVLGGLIGAHSLAELLKEEKGERLQTYDDELLKMAKELGNKLLPAFNTTSGLPFPR 162 (587)
T ss_pred HHHHHHHhccCCCCeEEEEeecccHhhhccchHHHHHHHHHHhccchhhhhhHHHHHHHHHHhhhhccccccCCCCCCcc
Confidence 99999999999999999999999999999999998862 1 899999999999999999
Q ss_pred cCCCCCCCCCC-----CcceeccccccchhchhhHHHhhCCchhHHHHHHHHHHHHhhhcc-CCeeeeeeeccCCceecc
Q 047597 133 VNLLHGVDEHE-----SKITSTAGGGTLTLEFGVLSRLTNDPIFEQVTKKAVLGIWARRSK-LNLVGAHINVFTGEWTQK 206 (577)
Q Consensus 133 vnl~~g~~~~~-----~~~t~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~~~~~L~~~~~~-~GL~p~~i~~~tG~~~~~ 206 (577)
+|++.|....+ .+.+|+|.+|||+|||..||++||+|.|++.|+++++.||..+.. ..|+|..||+.+|.|+..
T Consensus 163 inlk~gi~~pea~~~~e~dtctac~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rk 242 (587)
T KOG2430|consen 163 INLKFGIQDPEAHLGREKDTCTACAGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRK 242 (587)
T ss_pred cchhccccChhhhhcccccchhhccchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceec
Confidence 99999976532 357899999999999999999999999999999999999998754 589999999999999999
Q ss_pred cccccCCCchHHHhHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCcceEeccCCCcc-ccccccccccccccchhhcCC
Q 047597 207 DAGIGTSIDSFYEYLLKAYLLFGDEEYLYIFQESYQAAMHYLFNDPWYVEVNMDSAAI-VWPLFNSLQAFWPGLQVLAGD 285 (577)
Q Consensus 207 ~~~lGa~~DSyYEYLLK~~lL~gd~~~~~~y~~a~~ai~~~L~~~p~~~~~~~~sg~~-~~~~~dhL~CF~pGmlaLgg~ 285 (577)
.+++||+.|||||||||.|+|.||+.|++.|.+.|++|++|+-+.|.+.++.+..... ....|+.|-+||||+++|-|+
T Consensus 243 dsgigagidsyyey~lkayillgddsfldrfn~hydai~ryi~k~pi~ldvhihkp~l~ar~~mdallaf~pglqvlkgd 322 (587)
T KOG2430|consen 243 DSGIGAGIDSYYEYLLKAYILLGDDSFLDRFNKHYDAIKRYINKGPIFLDVHIHKPMLAARGFMDALLAFFPGLQVLKGD 322 (587)
T ss_pred ccCcCcchHHHHHHHHHHhheeccHHHHHHHHHHHHHHHHHhcCCCeEEEEecccchhhHhhHHHHHHHhCcchhhhccc
Confidence 9999999999999999999999999999999999999999999999888776654322 235799999999999999999
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCccccCccccccCCCccCCchhHHHHHHHHHHHcCChhHHHHHHHHHHHHhHhcccCC
Q 047597 286 IDPAVRTHAAFFSVWKRYGFTPEGFNLATLTIQQGQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCPC 365 (577)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~Gl~PE~f~~~~~~~~~~~~~Y~LRPE~IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt~~ 365 (577)
+.+|+++|+..+++.++..+.||.|.-+ ..+.| ...++|||++||.|+|||+||||.|.+.|-.+.++|+||.|+||
T Consensus 323 ik~aie~heml~qvikkh~flpeaft~d-f~vhw--aehpirpefaestyflykat~dp~yl~v~k~iidninkyakvpc 399 (587)
T KOG2430|consen 323 IKEAIEMHEMLFQVIKKHKFLPEAFTHD-FQVHW--AEHPIRPEFAESTYFLYKATGDPHYLEVAKQIIDNINKYAKVPC 399 (587)
T ss_pred cHHHHHHHHHHHHHHHHcccChHhhccc-ceeec--ccCCCChhhhhhheeeecccCCchHHHHHHHHHHHHhhheeCCc
Confidence 9999999999999999999999998643 23333 45789999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCcchHHHHHHHHHHHhHhccCCCCCCcccCCCCcEEecCCCccCCCCCCCccccccccccccccc
Q 047597 366 GYCHISDVEFHKKEDHMESFFLAETVKYLWLLFDLAVGPDNLVENGPYKYIFSTEGHLLPATPQISLKREHCSYFGAYCK 445 (577)
Q Consensus 366 Gya~i~dV~~~~~~D~mESFflAETLKYLYLLFsd~~~~d~~~~~~ld~~VFNTEaHPl~i~~~~~l~~~~~~~~~~~~~ 445 (577)
||++++||+++.++|+|+||||||++|||||||.| +.+++- +.|+|||+||||.||.+-+.. .
T Consensus 400 gfaalkdirt~~~ed~mdsf~lae~fkylylifad---~ediif-d~d~yi~tteah~lpl~i~tt-----n-------- 462 (587)
T KOG2430|consen 400 GFAALKDIRTGSHEDQMDSFFLAEMFKYLYLIFAD---KEDIIF-DIDDYIFTTEAHFLPLSIGTT-----N-------- 462 (587)
T ss_pred hHHHHHHHhhcchHHHHHHHHHHHHHHHHHheecC---HHHcee-chhHheEeecceeeeeeeccc-----c--------
Confidence 99999999999999999999999999999999997 344543 368999999999888763321 0
Q ss_pred CCCCCCCcccCCCCCCCcccCCCcccCccccCCCCCCCcccc----------cccCcceeeccCC
Q 047597 446 DSDSKQGSETSGVSADPQETNGSKFYGSWVHTGFPSDSFLES----------TSVPGLIKGLCPG 500 (577)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 500 (577)
..+|++...+..+.+++|.-.-+||...-++| .+++-.+..-||.
T Consensus 463 ----------qsiskknttseytelddsnfdwtcpntqilfpn~~~~~e~~~ep~k~i~~~~~p~ 517 (587)
T KOG2430|consen 463 ----------QSISKKNTTSEYTELDDSNFDWTCPNTQILFPNDKEKAENIIEPLKMILDADCPQ 517 (587)
T ss_pred ----------cccccccccccceecccccccccCCCccccCCCCHHHHHhhhhHHHHHhhccCCc
Confidence 22334334445555566655555665544444 2444556677885
No 7
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=96.66 E-value=0.054 Score=57.52 Aligned_cols=254 Identities=15% Similarity=0.065 Sum_probs=133.7
Q ss_pred ehhhhcccchhhhhhcCc----------cCccccc-ccCCCCCCCCCcCCCCCCCCCCCcceeccccccchhchhhHHHh
Q 047597 97 TTIRVLGGLLSAHLIARS----------SPRLLPA-FDTPTGIPFGSVNLLHGVDEHESKITSTAGGGTLTLEFGVLSRL 165 (577)
Q Consensus 97 TtIR~LGGLLSAY~LsgD----------ad~LlpA-FdTpsGiP~~~vnl~~g~~~~~~~~t~lAe~GSl~LEF~~LS~l 165 (577)
..-|.|-+|-.||.++++ .+.|..- .|...|-=+..++ ..|.+....+ .+=+.+-+..=+..|.+.
T Consensus 54 ~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~-~~g~~~~~~~--~l~~~a~~l~ala~~~~a 130 (384)
T cd00249 54 LQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALD-QDGRPVDATK--DLYSHAFALLAAAQAAKV 130 (384)
T ss_pred EecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEc-CCCCCccccc--chHHHHHHHHHHHHHHHh
Confidence 457888888888888876 2334432 3333231122222 1222211111 122223334446789999
Q ss_pred hCCchhHHHHHHHHHHHHhhh-ccCCeeeeeeeccCCceecccccccCCCchH---HHhHHHHHhhcCchHHHHHHHHHH
Q 047597 166 TNDPIFEQVTKKAVLGIWARR-SKLNLVGAHINVFTGEWTQKDAGIGTSIDSF---YEYLLKAYLLFGDEEYLYIFQESY 241 (577)
Q Consensus 166 TGd~kY~~~a~~~~~~L~~~~-~~~GL~p~~i~~~tG~~~~~~~~lGa~~DSy---YEYLLK~~lL~gd~~~~~~y~~a~ 241 (577)
|||+.|.+.|+++++.|.+.- ...|.+-...+... ...-+ ..++ .|-|+..+-++++++++++-++.+
T Consensus 131 t~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~-------~~~~~-~~~~~h~~~all~l~~~tgd~~~~~~A~~l~ 202 (384)
T cd00249 131 GGDPEARALAEETIDLLERRFWEDHPGAFDEADPGT-------PPYRG-SNPHMHLLEAMLAAYEATGEQKYLDRADEIA 202 (384)
T ss_pred cCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCC-------CCCCC-CChhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999998887643 12232221222210 01111 2333 588999999999999999888888
Q ss_pred HHHHhhcccCC--cceEeccC--------CCccccccccccc-cccccchhhcCCCC-hH-HHHHHHHHHHHhhhCCCCC
Q 047597 242 QAAMHYLFNDP--WYVEVNMD--------SAAIVWPLFNSLQ-AFWPGLQVLAGDID-PA-VRTHAAFFSVWKRYGFTPE 308 (577)
Q Consensus 242 ~ai~~~L~~~p--~~~~~~~~--------sg~~~~~~~dhL~-CF~pGmlaLgg~~~-~a-~~~~~~~~~~~~~~Gl~PE 308 (577)
+.+.+++...+ .+.+.... .+..+.| .|.. +.+ +++.|..... .. .+....+.......|.-||
T Consensus 203 ~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~P--gh~~e~a~-~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~ 279 (384)
T cd00249 203 DLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEP--GHQFEWAW-LLLRIASRSGQAWLIEKARRLFDLALALGWDPE 279 (384)
T ss_pred HHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCC--chHHHHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCcc
Confidence 99888876432 12221110 0111111 1111 111 2222222111 10 1111112222234555565
Q ss_pred c---cc-cCccccccCCCccCC--chhHHHHHHHHHHHcCChhHHHHHHHHHHHHhHhcccC
Q 047597 309 G---FN-LATLTIQQGQKSYPL--RPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCP 364 (577)
Q Consensus 309 ~---f~-~~~~~~~~~~~~Y~L--RPE~IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt~ 364 (577)
. +. ..+..-.+....-.. --|.|..+..+|++|||++|.+++-++++.+.++...+
T Consensus 280 ~G~~~~~~~~~~~~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~d~ 341 (384)
T cd00249 280 RGGLYYSFLDDGGLLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFIDP 341 (384)
T ss_pred CCCEEEeeECCCCCcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 2 22 111110011111111 35888889999999999999999999999999888755
No 8
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.64 E-value=0.076 Score=59.49 Aligned_cols=321 Identities=20% Similarity=0.152 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccccCCcCCCCCCCcceEEEeccchhhhcCChHHHHHHHHHHhhhcccccc----
Q 047597 14 LRDEVREMFYHAFDGYMEHAFPLDELRPLSCEGEDSLGGYALTLVDSLDTLALLGDRERFTTSVEWIGKNLQFDIN---- 89 (577)
Q Consensus 14 ~r~~VK~aF~hAW~~Y~~~Awg~DEl~PlS~~~~d~~gg~g~TLVDSLDTL~IMGl~eEf~~A~~~V~~~l~F~~~---- 89 (577)
|..+++..|...|.. ..-|++.--.+| + .|.+-+||++|++++. +-.+.+.++-+. ++|-..
T Consensus 17 r~~~~~~~~l~~~~~-~~Lc~~a~f~~p------s---~~~~~~~~~~~~~~~~--~~~v~d~~n~~~--~~~~~~~~~~ 82 (625)
T KOG2204|consen 17 RLKQIFLIFLGSSFQ-ETLCLGANFRLP------S---SSPLLLIDLLDSSYLC--TPLVQDVVNRII--FDFPAPPLAM 82 (625)
T ss_pred HHHHHHHHHHHHHHH-HHhhhhheeeCC------C---CCchhheeeccchhhh--hhHHHhcccccc--ccCCCccccc
Confidence 345667777777754 345777755555 2 4688889999998876 666666665332 233221
Q ss_pred ccccceeehhhhcccchhhhhhcCc---------cCcccccccCCCCCCCCCcCCCCCCCCCCCcceeccccccchhchh
Q 047597 90 KTVSVFETTIRVLGGLLSAHLIARS---------SPRLLPAFDTPTGIPFGSVNLLHGVDEHESKITSTAGGGTLTLEFG 160 (577)
Q Consensus 90 ~~VsvFETtIR~LGGLLSAY~LsgD---------ad~LlpAFdTpsGiP~~~vnl~~g~~~~~~~~t~lAe~GSl~LEF~ 160 (577)
.....-+.+-|.|-+++|+|....+ ++.++..|++++.+|....-.+......-...+....-++-.|-|.
T Consensus 83 ~~~~~p~~~~~~le~~~s~~~~~~~r~L~~ak~~~~~~~~~~~~~n~~~~~k~~~~s~l~~~~~~~~~~~~~~~~~~~~~ 162 (625)
T KOG2204|consen 83 EVIDAPDITTRVLEGLLSAYEEEMDRRLNKAKEVLPFILRSFDTPNRIPIKKPFQKSDLRNRFPDRTVPSGQLTPALAFE 162 (625)
T ss_pred ccccccccchhhhhhhHHHhhHHHHHHHHhhhhccccccccccCcccccccccccchhhhhcCCCcccCCccCCcccccc
Confidence 2456778889999999999998765 7788889999999987766554332211111112222222277788
Q ss_pred hHHHhhCCchhHHHHH---HHHHHHHhhhccCCeeeeeeeccCCceeccccccc--CCCchHHHhHHHHHhhcCchHHHH
Q 047597 161 VLSRLTNDPIFEQVTK---KAVLGIWARRSKLNLVGAHINVFTGEWTQKDAGIG--TSIDSFYEYLLKAYLLFGDEEYLY 235 (577)
Q Consensus 161 ~LS~lTGd~kY~~~a~---~~~~~L~~~~~~~GL~p~~i~~~tG~~~~~~~~lG--a~~DSyYEYLLK~~lL~gd~~~~~ 235 (577)
.++..+. .+|++.-+ .+|++-|.......+-++.+.|.+-+-- ...-+| ..|-+--.-|--.|++.=+++
T Consensus 163 ~~d~~~~-~~~~~rrekVkemm~hAw~~Yk~yawg~neLrp~sk~g~-s~~ifG~~~~GATIvDslDTlyim~l~~e--- 237 (625)
T KOG2204|consen 163 SLDPEDR-NKYRERREKVKEMMKHAWNNYKKYAWGKNELRPSSKQGH-SSSIFGAHLKGATIVDSLDTLYIMGLKEE--- 237 (625)
T ss_pred CcCccch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccCccccCCc-cccccccCcCCchHHHhhhHHHHHHHHHH---
Confidence 9999888 67765544 5677778776556666677777653321 122233 344443333444444432233
Q ss_pred HHHHHHHHHHhhcccCCcceEeccCCCccccccccccccccccchhhcCCCC------hHHHHHHHHHHHH-hhhCCCCC
Q 047597 236 IFQESYQAAMHYLFNDPWYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGDID------PAVRTHAAFFSVW-KRYGFTPE 308 (577)
Q Consensus 236 ~y~~a~~ai~~~L~~~p~~~~~~~~sg~~~~~~~dhL~CF~pGmlaLgg~~~------~a~~~~~~~~~~~-~~~Gl~PE 308 (577)
|+++-+=+...+-.+- + ++. ...++-=--|+||++.+-+-.. .|....+...-.| .++|+.-.
T Consensus 238 -~qEar~wi~~~~~~~~----v---~~~--~SvFE~NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~ 307 (625)
T KOG2204|consen 238 -FQEARDWIAYNLDFKT----V---PIE--LSVFETNIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKA 307 (625)
T ss_pred -HHHHHHHHHhhccccc----c---cch--hheeeeeeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchh
Confidence 3444333333322210 0 000 1122333458899887654221 1222222211112 24666555
Q ss_pred ccccCccc---ccc--CCCccCC------chhHHHHHHHHHHHcCChhHHHHHHHHHHHHhHhcccCCccc
Q 047597 309 GFNLATLT---IQQ--GQKSYPL------RPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCPCGYC 368 (577)
Q Consensus 309 ~f~~~~~~---~~~--~~~~Y~L------RPE~IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt~~Gya 368 (577)
.++..... ..+ +..+ +| -=| .-||=++||+|.|++..-.|=+.+++.-+-.+=|.
T Consensus 308 ~vn~ksG~~~n~~wasgg~S-ILaE~gtlhle----f~~LS~ltg~P~~~ekv~~IRk~l~k~ekP~GLyp 373 (625)
T KOG2204|consen 308 LVNNKSGDADNYGWASGGSS-ILAEFGTLHLE----FSYLSKLTGNPTFAEKVVKIRKVLNKSEKPHGLYP 373 (625)
T ss_pred hhccccCccCCcccccCcch-HhhhcCceeee----hHHhhhccCCchHHHHHHHHHHHHHhhcCCCCCCc
Confidence 55443211 011 1011 22 112 34788999999999999999999998887543343
No 9
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=96.46 E-value=0.018 Score=64.87 Aligned_cols=124 Identities=19% Similarity=0.171 Sum_probs=75.5
Q ss_pred hhhhcccchhhhhhcCc----------cCcc---cccccCCCCCCCCCcCCCCCCCCCCCcceeccccccchhchhhHHH
Q 047597 98 TIRVLGGLLSAHLIARS----------SPRL---LPAFDTPTGIPFGSVNLLHGVDEHESKITSTAGGGTLTLEFGVLSR 164 (577)
Q Consensus 98 tIR~LGGLLSAY~LsgD----------ad~L---lpAFdTpsGiP~~~vnl~~g~~~~~~~~t~lAe~GSl~LEF~~LS~ 164 (577)
.-.+|-||+.+|+++|+ ||.+ +..|+.. |. +.....|.|.+.+-+.+|-+
T Consensus 127 ~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~~---~~--------------~~~~~~~~~~i~~~l~~LY~ 189 (520)
T PF07944_consen 127 LGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGPE---PG--------------QKMGYPEHGGINEALVRLYE 189 (520)
T ss_pred HhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCHH---Hh--------------hcccccccchHHHHHHHHHH
Confidence 35678899999999998 6666 3322211 10 01112356667778999999
Q ss_pred hhCCchhHHHHHHHHHHHHhhh-----ccCCeeeeeeeccCCceecccccccCCCchHHHhHHHHHhhcCchHHHHHHHH
Q 047597 165 LTNDPIFEQVTKKAVLGIWARR-----SKLNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFGDEEYLYIFQE 239 (577)
Q Consensus 165 lTGd~kY~~~a~~~~~~L~~~~-----~~~GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYLLK~~lL~gd~~~~~~y~~ 239 (577)
+|||++|.++|++..+.-.... ...-+...+-+..-|+.. +.-..|+-+...|.++|+++|++.-..
T Consensus 190 ~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~~h~v--------r~~y~~~g~a~~y~~tgd~~~~~a~~~ 261 (520)
T PF07944_consen 190 ITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHIGHAV--------RAMYLYSGAADLYEETGDEEYLDAAEN 261 (520)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCccccceeeEEE--------EhhhhhhHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998765322111 111122222222222211 223467778999999999988776666
Q ss_pred HHHHHHh
Q 047597 240 SYQAAMH 246 (577)
Q Consensus 240 a~~ai~~ 246 (577)
.++.+.+
T Consensus 262 ~w~~v~~ 268 (520)
T PF07944_consen 262 FWDNVVR 268 (520)
T ss_pred HHHHHHh
Confidence 6666554
No 10
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=96.27 E-value=0.22 Score=52.93 Aligned_cols=200 Identities=13% Similarity=0.056 Sum_probs=110.7
Q ss_pred cchhchhhHHHhhCCchhHHHHHHHHHHHHhhh-ccC-CeeeeeeeccCCceecccccccCCCchHHHhHH------HHH
Q 047597 154 TLTLEFGVLSRLTNDPIFEQVTKKAVLGIWARR-SKL-NLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLL------KAY 225 (577)
Q Consensus 154 Sl~LEF~~LS~lTGd~kY~~~a~~~~~~L~~~~-~~~-GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYLL------K~~ 225 (577)
-++.=|....+++|++.|.+.|+++++.|.+.. ... |-+-..++. .|+.... .-..|+|.- ..|
T Consensus 57 r~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~-~g~~~~~-------~~~l~~~a~~l~ala~~~ 128 (384)
T cd00249 57 RQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQ-DGRPVDA-------TKDLYSHAFALLAAAQAA 128 (384)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcC-CCCCccc-------ccchHHHHHHHHHHHHHH
Confidence 345557788899999999999999999998742 222 433333432 2332211 123566644 888
Q ss_pred hhcCchHHHHHHHHHHHHHHhhcccC-C-cceEeccCCCccccccccccccccccchhhcCCC------ChHHHHHHHHH
Q 047597 226 LLFGDEEYLYIFQESYQAAMHYLFND-P-WYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGDI------DPAVRTHAAFF 297 (577)
Q Consensus 226 lL~gd~~~~~~y~~a~~ai~~~L~~~-p-~~~~~~~~sg~~~~~~~dhL~CF~pGmlaLgg~~------~~a~~~~~~~~ 297 (577)
..++++++++.-++.++-+.+++... . ++...... +... +.++.....+-+++.|.... +.|.+....+.
T Consensus 129 ~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~-~~~~-~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~ 206 (384)
T cd00249 129 KVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPG-TPPY-RGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLIL 206 (384)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCC-CCCC-CCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 88999999999999999999988621 2 22111111 1111 11111111111344443211 11222222222
Q ss_pred H-HHh-hhCCCCCccccCccccccCCCccCCch----hHHHHHHHHHHHcCChhHHHHHHHHHHHHhHhcccC
Q 047597 298 S-VWK-RYGFTPEGFNLATLTIQQGQKSYPLRP----ELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCP 364 (577)
Q Consensus 298 ~-~~~-~~Gl~PE~f~~~~~~~~~~~~~Y~LRP----E~IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt~ 364 (577)
. ++. ..|..+|.+.-.. .+...+..-..-| |.+-.+.-++++|||+.|++++-++++.+.++...+
T Consensus 207 ~~~~~~~~G~~~e~~~~~~-~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~ 278 (384)
T cd00249 207 DRFIDAESGVVREHFDEDW-NPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDP 278 (384)
T ss_pred HHhcCcccCeEEEEECCCC-CCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCc
Confidence 2 221 2454455543110 1111111222224 676667778999999999999999999998887543
No 11
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=95.64 E-value=0.32 Score=54.88 Aligned_cols=269 Identities=18% Similarity=0.146 Sum_probs=140.8
Q ss_pred hhhcCccCcccccccCCCCCCCCCcCCCCCCCC--CCCcceeccccccchhchhhHHHhhCCchhHHHHHHHHHHHHhhh
Q 047597 109 HLIARSSPRLLPAFDTPTGIPFGSVNLLHGVDE--HESKITSTAGGGTLTLEFGVLSRLTNDPIFEQVTKKAVLGIWARR 186 (577)
Q Consensus 109 Y~LsgDad~LlpAFdTpsGiP~~~vnl~~g~~~--~~~~~t~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~~~~~L~~~~ 186 (577)
|.|.-+-|+|+..|....|+|-..... |.-. .+.....=..+|-..==..++...|+|++..+.++++++.|.+..
T Consensus 19 ~~l~~~~d~ll~~~r~~agl~~~~~~~--g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q 96 (520)
T PF07944_consen 19 YLLPLDPDRLLYNFRSHAGLPNFAIAY--GGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQ 96 (520)
T ss_pred HHHHhHHHHHhhhcCcccCCCCccccC--CCCccCCCCCccCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Confidence 334444677777777666666444322 1111 111111112233333334577889999999999999999999877
Q ss_pred ccCCeeeeeeecc----CCceec---ccccccCCCchHHHhHHHHHhhcCchHHHHHHHHHHHHHHhhccc-CCcceEec
Q 047597 187 SKLNLVGAHINVF----TGEWTQ---KDAGIGTSIDSFYEYLLKAYLLFGDEEYLYIFQESYQAAMHYLFN-DPWYVEVN 258 (577)
Q Consensus 187 ~~~GL~p~~i~~~----tG~~~~---~~~~lGa~~DSyYEYLLK~~lL~gd~~~~~~y~~a~~ai~~~L~~-~p~~~~~~ 258 (577)
...|-++.+.... ...|.. ...++|- .++=|+-.|..+|+++.+++-.++.+-+.+.+.. ++
T Consensus 97 ~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~----ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~------ 166 (520)
T PF07944_consen 97 QPDGYLGTYPEERNFNPDDRWAPDMHELYCLGK----LLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGP------ 166 (520)
T ss_pred cCCceecccccccccccccCCCCCccceehHhH----HHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCH------
Confidence 6778776655433 223333 0111111 3355778888999998777666666555222211 00
Q ss_pred cCCCccccccccccccccccch-hhcC--CCChHHHHHHHHHHHHhhhCCCC--CccccCccccccCCCccCCchhHH--
Q 047597 259 MDSAAIVWPLFNSLQAFWPGLQ-VLAG--DIDPAVRTHAAFFSVWKRYGFTP--EGFNLATLTIQQGQKSYPLRPELI-- 331 (577)
Q Consensus 259 ~~sg~~~~~~~dhL~CF~pGml-aLgg--~~~~a~~~~~~~~~~~~~~Gl~P--E~f~~~~~~~~~~~~~Y~LRPE~I-- 331 (577)
.+...++.|=.+||. +|-- .+....+.......+....|..| .....+. .+.-..+-.-|.+|
T Consensus 167 -------~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~---~~~~~a~~~~~h~vr~ 236 (520)
T PF07944_consen 167 -------EPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDH---LPGRHANTHIGHAVRA 236 (520)
T ss_pred -------HHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCcc---CCCccccceeeEEEEh
Confidence 011223344344442 1110 00000001111112233456666 2211111 11122244455655
Q ss_pred ----HHHHHHHHHcCChhHHHHHHHHHHHHhH-hcccCCccccc---cccccC----CCCCCcchHHHHHHHHHHHhHhc
Q 047597 332 ----ESTYLLYKATRDPRYLDAGRDMVASLQY-GTRCPCGYCHI---SDVEFH----KKEDHMESFFLAETVKYLWLLFD 399 (577)
Q Consensus 332 ----ESlfyLyR~TGD~kYrd~gW~if~aie~-~~rt~~Gya~i---~dV~~~----~~~D~mESFflAETLKYLYLLFs 399 (577)
+++--+|++|||+.|++.+..+|+.+.+ +.-..+|.++- .....+ ......|+==-.+.+|...-||.
T Consensus 237 ~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~ 316 (520)
T PF07944_consen 237 MYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPNRLAYAETCASVNMMKLARRLFR 316 (520)
T ss_pred hhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCcCCCCccccHHHHHHHHHHHHHh
Confidence 5888899999999999999999999854 55566777766 323221 11122455445555666666664
No 12
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=92.90 E-value=1 Score=47.68 Aligned_cols=233 Identities=16% Similarity=0.103 Sum_probs=121.4
Q ss_pred chhhHHHhhCCchhHHHHHHHHHHHHhhh--ccCCeeeeeeeccCCceecccccccCCCchHHHhHHHHHhhcCchHHHH
Q 047597 158 EFGVLSRLTNDPIFEQVTKKAVLGIWARR--SKLNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFGDEEYLY 235 (577)
Q Consensus 158 EF~~LS~lTGd~kY~~~a~~~~~~L~~~~--~~~GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYLLK~~lL~gd~~~~~ 235 (577)
=|..+.+ +|++.|.++|++.++.|.+.. ...|-+-..++ .|..... ....-+++|.=+-+-.+..++++++++
T Consensus 29 ~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~--~~~~~~~--~~~~Y~~af~l~ala~~~~tg~~~~~~ 103 (346)
T PF07221_consen 29 TFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLD--DGGPLDP--QKDLYDQAFALLALAEARATGDPEALE 103 (346)
T ss_dssp HHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEE--TTEEEE----EEHHHHHHHHHHHHHHHCTT-TTHHH
T ss_pred HHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeC--CCCCCcc--ccchHHHHHHHHHHHHHHHhCChhHHH
Confidence 3667777 899999999999999998753 22333322232 1222111 111222344433333467889999998
Q ss_pred HHHHHHHHHHhhcccCC--cceEeccCCCc---cccccccccccccccchhhcCCC------ChHHHHHHHHH-HHHh-h
Q 047597 236 IFQESYQAAMHYLFNDP--WYVEVNMDSAA---IVWPLFNSLQAFWPGLQVLAGDI------DPAVRTHAAFF-SVWK-R 302 (577)
Q Consensus 236 ~y~~a~~ai~~~L~~~p--~~~~~~~~sg~---~~~~~~dhL~CF~pGmlaLgg~~------~~a~~~~~~~~-~~~~-~ 302 (577)
+-+++++.+.+++.... .|.+....... ...+.|.-+. ++++|.... +.+.+....+. .++. +
T Consensus 104 ~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~e----A~l~l~~~~~~~~~~~~a~~l~~~~~~~f~~~~ 179 (346)
T PF07221_consen 104 LAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLE----AFLALYEATGDPRYLDRAEELLDLFLDRFADPE 179 (346)
T ss_dssp HHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHCC
T ss_pred HHHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHH----HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 88899999999886432 33221111011 1112222122 223332211 11222222222 2222 4
Q ss_pred hCCCCCccccCccccccCCC-----ccCCc-hhHHHHHHHHHHHc-----CChhHHHHHHHHHHHHhHhcccC-Cc-ccc
Q 047597 303 YGFTPEGFNLATLTIQQGQK-----SYPLR-PELIESTYLLYKAT-----RDPRYLDAGRDMVASLQYGTRCP-CG-YCH 369 (577)
Q Consensus 303 ~Gl~PE~f~~~~~~~~~~~~-----~Y~LR-PE~IESlfyLyR~T-----GD~kYrd~gW~if~aie~~~rt~-~G-ya~ 369 (577)
.|..||.|+-+-...+.... .+..- --.+|..++|.++- +++.|.+.|.+++....++.-.+ .| +-.
T Consensus 180 ~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~~~gG~~~ 259 (346)
T PF07221_consen 180 SGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHGWDREGGGLFY 259 (346)
T ss_dssp TTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHHBSTTTSSB-S
T ss_pred cCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHheEecCCCeEEE
Confidence 68889987654222211111 12122 46899999999887 89999999999999887766654 33 332
Q ss_pred ccccccCCCCCCcchHHHHHHHHHHHhHhc
Q 047597 370 ISDVEFHKKEDHMESFFLAETVKYLWLLFD 399 (577)
Q Consensus 370 i~dV~~~~~~D~mESFflAETLKYLYLLFs 399 (577)
..|.......+..--.--+|.||=+++++.
T Consensus 260 ~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~ 289 (346)
T PF07221_consen 260 SVDRDGKPPDRSKRWWPQAEALKALLAAYE 289 (346)
T ss_dssp EEETTS-BSST-EEHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCccccCccccHHHHHHHHHHHHHh
Confidence 223333222233333445777776666654
No 13
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=89.67 E-value=4.6 Score=42.67 Aligned_cols=206 Identities=17% Similarity=0.141 Sum_probs=102.5
Q ss_pred hchhhHHHhhCCchhHHHHHHHHHHHHhhh--ccCCeeeeeeeccCCceecccccccCCCch---HHHhHHHHHhhcCch
Q 047597 157 LEFGVLSRLTNDPIFEQVTKKAVLGIWARR--SKLNLVGAHINVFTGEWTQKDAGIGTSIDS---FYEYLLKAYLLFGDE 231 (577)
Q Consensus 157 LEF~~LS~lTGd~kY~~~a~~~~~~L~~~~--~~~GL~p~~i~~~tG~~~~~~~~lGa~~DS---yYEYLLK~~lL~gd~ 231 (577)
+-+.. ++.||++.|.+.|+++++.|.+.- +..|++....+..-... .+..+ ..|-++..+-+++++
T Consensus 88 ~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~--------r~~n~~mhl~eA~l~l~~~~~~~ 158 (346)
T PF07221_consen 88 LALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPP--------RGQNPHMHLLEAFLALYEATGDP 158 (346)
T ss_dssp HHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCB--------EEHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccC--------CCCChhHHHHHHHHHHHHhccCH
Confidence 33444 578999999999999999887652 23466554444321111 01122 357778888888888
Q ss_pred HHHHHHHHHHHHHHhhcccCC-c----ceEe--cc-CCCc--------cccccccccccccccch-h--hcCCCChHHHH
Q 047597 232 EYLYIFQESYQAAMHYLFNDP-W----YVEV--NM-DSAA--------IVWPLFNSLQAFWPGLQ-V--LAGDIDPAVRT 292 (577)
Q Consensus 232 ~~~~~y~~a~~ai~~~L~~~p-~----~~~~--~~-~sg~--------~~~~~~dhL~CF~pGml-a--Lgg~~~~a~~~ 292 (577)
.+++...+.++.++.+..... . +... +. ..+. .+.|- .++.+.|==+- + .+.........
T Consensus 159 ~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pG-H~~E~~wll~~~~~~~~~~~~~~~~~ 237 (346)
T PF07221_consen 159 RYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPG-HDFEWAWLLLEAARLTGRGDPDWLER 237 (346)
T ss_dssp HHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HH-HHHHHHHHHHHHHHHCHCT-HTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCc-hhHHHHHHHHHHHHhcccccHHHHHH
Confidence 888888888888886655321 1 1110 00 0000 01100 00111110000 0 01111111111
Q ss_pred HHHHHHHHhhhCCCCCccccCc---c--ccccCCCccCCchhHHHHHHHHHHHcCChhHHHHHHHHHHHHhHhcccC--C
Q 047597 293 HAAFFSVWKRYGFTPEGFNLAT---L--TIQQGQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCP--C 365 (577)
Q Consensus 293 ~~~~~~~~~~~Gl~PE~f~~~~---~--~~~~~~~~Y~LRPE~IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt~--~ 365 (577)
....+..-...|..+|.-.+.. . .....++..---.|.+-.+..+|++|||++|.+++-++++-+.++...+ +
T Consensus 238 a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~~~~d~~~G 317 (346)
T PF07221_consen 238 ARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFRHFIDPEYG 317 (346)
T ss_dssp HHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTB-TTTS
T ss_pred HHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 1111111224566666532211 1 1111122222347999999999999999999999999999999998654 3
Q ss_pred ccccccc
Q 047597 366 GYCHISD 372 (577)
Q Consensus 366 Gya~i~d 372 (577)
++-..-|
T Consensus 318 ~W~~~l~ 324 (346)
T PF07221_consen 318 EWFDYLD 324 (346)
T ss_dssp SB-SEE-
T ss_pred eeEeeEC
Confidence 4444433
No 14
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.79 E-value=0.92 Score=52.47 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCcCC-CCCCCcceEEEeccchh-hhcCChHHHH---HHHHHHhh
Q 047597 8 AEEARQLRDEVREMFYHAFDGYMEHAFPLDELRPLSCEGE-DSLGGYALTLVDSLDTL-ALLGDRERFT---TSVEWIGK 82 (577)
Q Consensus 8 ~~~~~~~r~~VK~aF~hAW~~Y~~~Awg~DEl~PlS~~~~-d~~gg~g~TLVDSLDTL-~IMGl~eEf~---~A~~~V~~ 82 (577)
.+++..+.+.+|+..+.++.+= .+|-...-. -.|||| +|.+|--. .+.|..+=++ ++.++|.+
T Consensus 378 ~~~~~~~l~~~r~kL~~~R~~R---------~~P~~Ddkvlt~wNgl---mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~ 445 (667)
T COG1331 378 IEEAEEKLERAREKLLAAREKR---------KQPSRDDKVLTDWNGL---MIAALAEAGRVLGDPEYLEAAERAADFILD 445 (667)
T ss_pred hhhhHHHHHHHHHHHHHHHHhC---------CCCCCCcceeeccHHH---HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4566777888888888887652 223221110 124443 35555433 4556554444 44567776
Q ss_pred hcccc------ccc---cccceeehhhhcccchhhhhhcCc----------cCcccccccCCC-CCCCCCcCCCCCCC--
Q 047597 83 NLQFD------INK---TVSVFETTIRVLGGLLSAHLIARS----------SPRLLPAFDTPT-GIPFGSVNLLHGVD-- 140 (577)
Q Consensus 83 ~l~F~------~~~---~VsvFETtIR~LGGLLSAY~LsgD----------ad~LlpAFdTps-GiP~~~vnl~~g~~-- 140 (577)
++.-+ .++ .+-.-|--..++.|||+.|+.++| ++.++..|-.+. | -+..-.......
T Consensus 446 ~l~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~~gG-f~~t~~~~~~l~ir 524 (667)
T COG1331 446 NLYVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWDDEGG-FYDTPSDSEDLLIR 524 (667)
T ss_pred hhcccchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCCCCC-cccCCCcccccccC
Confidence 65433 122 345566678999999999999998 666666664444 4 221111111111
Q ss_pred -CCCCcceeccccccchhchhhHHHhhCCchhHHHHHHHHHHHHhh
Q 047597 141 -EHESKITSTAGGGTLTLEFGVLSRLTNDPIFEQVTKKAVLGIWAR 185 (577)
Q Consensus 141 -~~~~~~t~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~~~~~L~~~ 185 (577)
.........+.-+....-+.+||++|||.+|.+.|.++.+.+...
T Consensus 525 ~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~ 570 (667)
T COG1331 525 PKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAFAGL 570 (667)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Confidence 111111223445666777999999999999999999998877654
No 15
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=85.47 E-value=19 Score=37.11 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=90.4
Q ss_pred hhhHHHhhCCchhHHHHHHHHHHHHhhhccCCeeeeeeeccCCceecccccccCCCchHHHhHHHHHhhcCchHHHHHHH
Q 047597 159 FGVLSRLTNDPIFEQVTKKAVLGIWARRSKLNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFGDEEYLYIFQ 238 (577)
Q Consensus 159 F~~LS~lTGd~kY~~~a~~~~~~L~~~~~~~GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYLLK~~lL~gd~~~~~~y~ 238 (577)
+..|.+. +|++|.+.|.++.+.|.+........+.. ..+. ....++--+.-..--.|++.|..+++++|++.-+
T Consensus 92 ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~~~~---~~~~--~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~ 165 (321)
T cd04791 92 LLYFART-GDPALLEAAAKIAELLAEALERGDPALLW---PDFD--RVDHGLLHGWAGIALFLLRLYKATGDSRYLELAE 165 (321)
T ss_pred HHHHHhc-CChHHHHHHHHHHHHHHHHhhcccccccc---ccCC--CCCCccccCcHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4567777 99999999999999887643211111110 0010 1112332233334466889999999999888777
Q ss_pred HHHHHHHhhcccCCcceEeccCCCccccccccccccccccchhhcCCCChHHHHHHHHHHHHhhhCCCCCccccCccccc
Q 047597 239 ESYQAAMHYLFNDPWYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGDIDPAVRTHAAFFSVWKRYGFTPEGFNLATLTIQ 318 (577)
Q Consensus 239 ~a~~ai~~~L~~~p~~~~~~~~sg~~~~~~~dhL~CF~pGmlaLgg~~~~a~~~~~~~~~~~~~~Gl~PE~f~~~~~~~~ 318 (577)
++++..+++....+ .| ..+. .. .... .| .| .
T Consensus 166 ~~~~~~~~~~~~~~--------~g-~~~~--~~-----------~~~~-------------------~~---~w-----c 196 (321)
T cd04791 166 EALDKELARAVVDD--------GG-LLQV--DE-----------GARL-------------------LP---YL-----C 196 (321)
T ss_pred HHHHHHHHhhccCC--------CC-ceEc--CC-----------CCcc-------------------Cc---cc-----C
Confidence 77777666533211 00 0000 00 0000 00 00 0
Q ss_pred cCCCccCCchhHHHHHHHHHHHcCChhHHHHHHHHHHHHhHhcccC----Ccccccccc
Q 047597 319 QGQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCP----CGYCHISDV 373 (577)
Q Consensus 319 ~~~~~Y~LRPE~IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt~----~Gya~i~dV 373 (577)
---|=++.++.-++++|+|++|++.+-++++++.+.+... +|.+++-.+
T Consensus 197 ------hG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~~~~~lchG~~G~~~~ 249 (321)
T cd04791 197 ------SGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSCYANPGLFSGTAGLGAH 249 (321)
T ss_pred ------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhccCccccCCcHhHHHH
Confidence 0124566678889999999999999999999998776433 467776544
No 16
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=83.59 E-value=22 Score=37.53 Aligned_cols=34 Identities=24% Similarity=0.150 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHhHhcccC
Q 047597 331 IESTYLLYKATRDPRYLDAGRDMVASLQYGTRCP 364 (577)
Q Consensus 331 IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt~ 364 (577)
++.++++++.|||++|.+.|.+-+....+++.-+
T Consensus 130 ~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~ 163 (336)
T PF07470_consen 130 LPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDP 163 (336)
T ss_dssp HHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-T
T ss_pred HHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCC
Confidence 3568889999999999999999999999887744
No 17
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=83.10 E-value=22 Score=41.66 Aligned_cols=162 Identities=21% Similarity=0.224 Sum_probs=93.8
Q ss_pred chhchhhHHHhhCCchhHHHHHHHHHHHHhhhccCCeeeeeeeccCCceecccccccCCCchHHHhH----HHHHhhcCc
Q 047597 155 LTLEFGVLSRLTNDPIFEQVTKKAVLGIWARRSKLNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYL----LKAYLLFGD 230 (577)
Q Consensus 155 l~LEF~~LS~lTGd~kY~~~a~~~~~~L~~~~~~~GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYL----LK~~lL~gd 230 (577)
|+-=+...++++||++|.+.|+++.+.|.+.-....|.=.+. .| .....|...| |-+| |-.|-.+++
T Consensus 416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~---~G----~a~~~g~leD--YA~~i~gll~lye~t~d 486 (667)
T COG1331 416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYR---GG----EAAVAGLLED--YAFLILGLLALYEATGD 486 (667)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeee---cC----cccccccchh--HHHHHHHHHHHHHhhCc
Confidence 344466788999999999999999998876532221211111 11 1122333334 4554 445666778
Q ss_pred hHHHHHHHHHHHHHHhhcccCC--cceEeccCCCccccccccccccccccchhhcCCCChHHHHHHHHHHHHhhhCCCCC
Q 047597 231 EEYLYIFQESYQAAMHYLFNDP--WYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGDIDPAVRTHAAFFSVWKRYGFTPE 308 (577)
Q Consensus 231 ~~~~~~y~~a~~ai~~~L~~~p--~~~~~~~~sg~~~~~~~dhL~CF~pGmlaLgg~~~~a~~~~~~~~~~~~~~Gl~PE 308 (577)
..|++.-.+..+.+++++.... +|.... . .++ +. .++ .+
T Consensus 487 ~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~-~--------~~~--------------l~------------ir~----~~ 527 (667)
T COG1331 487 LAYLEKAIELADEAIADFWDDEGGFYDTPS-D--------SED--------------LL------------IRP----KE 527 (667)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccCCC-c--------ccc--------------cc------------cCC----CC
Confidence 8898888888888888876421 111000 0 000 00 000 00
Q ss_pred ccccCccccccCCCccCCchhHHHHHHHHHHHcCChhHHHHHHHHHHHHhH-hcccCCcccccccc
Q 047597 309 GFNLATLTIQQGQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMVASLQY-GTRCPCGYCHISDV 373 (577)
Q Consensus 309 ~f~~~~~~~~~~~~~Y~LRPE~IESlfyLyR~TGD~kYrd~gW~if~aie~-~~rt~~Gya~i~dV 373 (577)
.. +..++ ..|- =.+..+.-|-++|||.+|.|.|+++++++.. ..+.+.+++++..+
T Consensus 528 ~~---D~a~~---S~na---~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~~~~p~~~~~~~~a 584 (667)
T COG1331 528 PT---DGATP---SGNA---VAAQALLRLSLLTGDARYLEAAEDILQAFAGLAERAPFAHAGLLLA 584 (667)
T ss_pred CC---CCCCC---CHHH---HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhCCccchHHHHH
Confidence 00 00000 0011 2345677788999999999999999999955 44677888877554
No 18
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=82.86 E-value=20 Score=40.94 Aligned_cols=173 Identities=16% Similarity=0.119 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHhhhccCCeeeeeeeccCCceecccccccCCCchHHHhHHHHHhhcCchHHHHHHHHHHHHHHhhccc
Q 047597 171 FEQVTKKAVLGIWARRSKLNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFGDEEYLYIFQESYQAAMHYLFN 250 (577)
Q Consensus 171 Y~~~a~~~~~~L~~~~~~~GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYLLK~~lL~gd~~~~~~y~~a~~ai~~~L~~ 250 (577)
-.+.++.++++-|+...+...--+.+.|.++...+ +|+.+-+.-+-|=-.||+.-.++ |.+|.+-+.+.+-.
T Consensus 72 r~~~Vk~~F~haW~~Y~~~Awg~DEL~P~S~~~~~----~~g~g~TlVDSLDTL~IMgl~~E----f~~a~~~V~~~l~f 143 (522)
T PTZ00470 72 RRESVREAMKHAWEGYKEYAWGHDELRPLTKRHHE----WFGLGLTIIDSLDTLKIMGLKKE----YKEGRDWVANNLKQ 143 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCccceecCcCCccC----CCcchhHHHHHHHHHHHcCChHH----HHHHHHHHHhhCCC
Confidence 45667888999998765555555566666666422 34556666677888888865554 56777777765543
Q ss_pred CCcceEeccCCCccccccccccccccccchhh---cCC---CChHHHHHHHHHHHHh-hhCCCCCccccCccccccC---
Q 047597 251 DPWYVEVNMDSAAIVWPLFNSLQAFWPGLQVL---AGD---IDPAVRTHAAFFSVWK-RYGFTPEGFNLATLTIQQG--- 320 (577)
Q Consensus 251 ~p~~~~~~~~sg~~~~~~~dhL~CF~pGmlaL---gg~---~~~a~~~~~~~~~~~~-~~Gl~PE~f~~~~~~~~~~--- 320 (577)
+.- ..+ ....++.-.-++||+|.. .++ ++.|.+........+. ++|++--.+++........
T Consensus 144 ~~~------~~~--~vsvFEttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~ 215 (522)
T PTZ00470 144 SKD------TGL--GVSVFETTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWA 215 (522)
T ss_pred CCC------CCC--eeeeeeeehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccC
Confidence 110 001 112334444456666533 232 1345554444444443 5677655555543211110
Q ss_pred -CCccC--CchhHHHHHHHHHHHcCChhHHHHHHHHHHHHhHh
Q 047597 321 -QKSYP--LRPELIESTYLLYKATRDPRYLDAGRDMVASLQYG 360 (577)
Q Consensus 321 -~~~Y~--LRPE~IESlfyLyR~TGD~kYrd~gW~if~aie~~ 360 (577)
....+ .-.=.+| .-+|.|+|||++|.+.+-++++.|.+.
T Consensus 216 ~~~~~lAe~gSl~LE-F~~LS~lTGd~kY~~~a~~i~~~l~~~ 257 (522)
T PTZ00470 216 GGCSILSEVGTLQLE-FNYLSEITGDPKYAEYVDKVMDALFSM 257 (522)
T ss_pred CCccchhhhhhHHHH-HHHHHHhhCCHHHHHHHHHHHHHHHhc
Confidence 00000 0011122 357999999999999999999999764
No 19
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=78.58 E-value=2.6 Score=44.49 Aligned_cols=80 Identities=25% Similarity=0.217 Sum_probs=53.0
Q ss_pred hhHHHhhCCchhHHHHHHHHHHHHhhhcc--CCeeeeeeeccCCceecccccccCCCchHH---HhHHHHHhhcCchHHH
Q 047597 160 GVLSRLTNDPIFEQVTKKAVLGIWARRSK--LNLVGAHINVFTGEWTQKDAGIGTSIDSFY---EYLLKAYLLFGDEEYL 234 (577)
Q Consensus 160 ~~LS~lTGd~kY~~~a~~~~~~L~~~~~~--~GL~p~~i~~~tG~~~~~~~~lGa~~DSyY---EYLLK~~lL~gd~~~~ 234 (577)
..|-+.|||++|.+.+.++.+.+...... .|-+.. +..... -.| .|+.| ..|.....++|++.|.
T Consensus 77 ~~~y~~t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~--~~~~~~-----~~w---iD~~~M~~p~l~~~~~~tgd~~~~ 146 (336)
T PF07470_consen 77 LDLYERTGDEKYKDAAIQAADWLLARRPRTSDGGFWH--NRPYPN-----QVW---IDGMYMNLPFLAWAGKLTGDPKYL 146 (336)
T ss_dssp HHHHHHH-THHHHHHHHHHHHHHHHTSCBECTGCBEC--TTTSTT-----EEE---TTHHHHHHHHHHHHHHHHTGHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCCCCCCcccc--CCCCCC-----cee---eccccccHHHHHHHHHHHCCcHHH
Confidence 34889999999999999999966654332 333322 111111 111 68888 8999999999999887
Q ss_pred HHHHHHHHHHHhhcc
Q 047597 235 YIFQESYQAAMHYLF 249 (577)
Q Consensus 235 ~~y~~a~~ai~~~L~ 249 (577)
+.-.+-+....+++.
T Consensus 147 ~~a~~q~~~~~~~~~ 161 (336)
T PF07470_consen 147 DEAVRQFRLTRKYLY 161 (336)
T ss_dssp HHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHhcc
Confidence 765555566666655
No 20
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=76.12 E-value=11 Score=37.46 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=61.7
Q ss_pred CcceeccccccchhchhhHHHhhCCchhHHHHHHHHHHHHhhhccCCeeeeeeeccCCceeccc------ccccCCCc--
Q 047597 144 SKITSTAGGGTLTLEFGVLSRLTNDPIFEQVTKKAVLGIWARRSKLNLVGAHINVFTGEWTQKD------AGIGTSID-- 215 (577)
Q Consensus 144 ~~~t~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~~~~~L~~~~~~~GL~p~~i~~~tG~~~~~~------~~lGa~~D-- 215 (577)
...++.|-.-.+.+ |.|..++|||++|.++|+++++.+.....+-|+.-..-+- +-|.... ..+-+..-
T Consensus 25 gW~SamaQG~a~s~-l~RAy~~t~d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~~--~~wyeEYp~~p~s~VLNGfiysL 101 (189)
T PF06662_consen 25 GWYSAMAQGQAISV-LARAYQLTGDEKYLDAAKKALNSFKVPVEEGGVLATFKNK--YPWYEEYPTTPPSYVLNGFIYSL 101 (189)
T ss_pred CcHhHHHHHHHHHH-HHHHHHhHCCHHHHHHHHHHHHHhcChHhhCCeeEEecCC--cEeEeecCCCCCCEEeehHHHHH
Confidence 34555555444444 7799999999999999999998776544444544332220 2232211 11222111
Q ss_pred -hHHHhHHHHHhhcCchHHHHHHHHHHHHHHhhcc
Q 047597 216 -SFYEYLLKAYLLFGDEEYLYIFQESYQAAMHYLF 249 (577)
Q Consensus 216 -SyYEYLLK~~lL~gd~~~~~~y~~a~~ai~~~L~ 249 (577)
..|+|- ..+++++..++|++.++++++.|-
T Consensus 102 ~GLyd~~----~~~~~~~A~~lf~~Gl~sLk~~Lp 132 (189)
T PF06662_consen 102 IGLYDYY----RLTGDEEAKELFDKGLKSLKKMLP 132 (189)
T ss_pred HHHHHHH----HhcCCHHHHHHHHHHHHHHHHHHH
Confidence 245554 567788899999999999999874
No 21
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.08 E-value=3.7 Score=38.42 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccccCCcCCCCCCCcceEEEeccchh-hhcCChHHH---------------HHHHH
Q 047597 15 RDEVREMFYHAFDGYMEHAFPLDELRPLSCEGEDSLGGYALTLVDSLDTL-ALLGDRERF---------------TTSVE 78 (577)
Q Consensus 15 r~~VK~aF~hAW~~Y~~~Awg~DEl~PlS~~~~d~~gg~g~TLVDSLDTL-~IMGl~eEf---------------~~A~~ 78 (577)
+++|.+-+...-..|-+ ...|.+.|-+.- ++.+| .|||||- .||++.||| .+|++
T Consensus 51 k~~v~~RVl~VVk~~dk--i~~~k~~~~s~f----~~DLG---lDSLD~VEiVMAlEEEFgiEIpd~dAdki~t~~da~~ 121 (131)
T KOG1748|consen 51 KKEVVDRVLDVVKKFDK--IDPSKLTTDSDF----FKDLG---LDSLDTVEIVMALEEEFGIEIPDEDADKIKTVRDAAD 121 (131)
T ss_pred HHHHHHHHHHHHHHhhc--CCccccchhhHH----HHhcC---CcccccchhhhhhHHHhCCccCcchhhhhCCHHHHHH
Confidence 46788888888888764 344444443322 33466 6999997 789999999 36888
Q ss_pred HHhhhc
Q 047597 79 WIGKNL 84 (577)
Q Consensus 79 ~V~~~l 84 (577)
||.++.
T Consensus 122 yI~~~~ 127 (131)
T KOG1748|consen 122 YIADKP 127 (131)
T ss_pred HHHhcc
Confidence 887643
No 22
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=64.77 E-value=4.7 Score=45.29 Aligned_cols=79 Identities=23% Similarity=0.217 Sum_probs=38.1
Q ss_pred ccccCCCCCCCCCcCCCCCCCCCCCcceeccccccchhchhhHHHhhCCchhHHHHHHHHHHHHhh-hccCCee--e--e
Q 047597 120 PAFDTPTGIPFGSVNLLHGVDEHESKITSTAGGGTLTLEFGVLSRLTNDPIFEQVTKKAVLGIWAR-RSKLNLV--G--A 194 (577)
Q Consensus 120 pAFdTpsGiP~~~vnl~~g~~~~~~~~t~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~~~~~L~~~-~~~~GL~--p--~ 194 (577)
-+||+.|+-|+...+.. | .....++.|--=-+.==+..||.+||||+|.+.|..+.+..+.. ....||+ | .
T Consensus 43 DG~D~~t~~pV~W~~pD-g---~~~~iSNfAsQQN~lR~L~~LS~lTgd~~Y~q~A~~~~~yfldh~~D~~GL~~WGGHr 118 (557)
T PF06917_consen 43 DGIDPRTLKPVEWIFPD-G---RDAPISNFASQQNFLRTLVGLSNLTGDPKYQQRAQEIIRYFLDHFVDDSGLFYWGGHR 118 (557)
T ss_dssp SEE-TTT--B-EEE-TT-S----EEEEE-GGG-HHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHSB-TTS-BS-STT-
T ss_pred cccccCCCCceEEECCC-C---CccccccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhccCCCcceeecCce
Confidence 36788888887666542 2 11123333332112222345999999999999999999887765 2223654 2 2
Q ss_pred eeeccCCc
Q 047597 195 HINVFTGE 202 (577)
Q Consensus 195 ~i~~~tG~ 202 (577)
+||..|..
T Consensus 119 Fi~L~tl~ 126 (557)
T PF06917_consen 119 FINLDTLQ 126 (557)
T ss_dssp EEETTT--
T ss_pred eEecccCC
Confidence 35555443
No 23
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=62.01 E-value=19 Score=39.04 Aligned_cols=140 Identities=21% Similarity=0.151 Sum_probs=70.8
Q ss_pred cchhhhhhcCc---------------cCcccccccCC---CCCCCCCcCCCCCCCCCCCcce-eccccccchhchhhHHH
Q 047597 104 GLLSAHLIARS---------------SPRLLPAFDTP---TGIPFGSVNLLHGVDEHESKIT-STAGGGTLTLEFGVLSR 164 (577)
Q Consensus 104 GLLSAY~LsgD---------------ad~LlpAFdTp---sGiP~~~vnl~~g~~~~~~~~t-~lAe~GSl~LEF~~LS~ 164 (577)
++|.||+++++ .+.+...||+. .||+........+. ..+.+ +-+.+ .+=..||.+
T Consensus 96 a~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~---~~Kna~sN~~~---~~laarL~~ 169 (370)
T PF03663_consen 96 ALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGY---DYKNAISNGPA---AQLAARLYR 169 (370)
T ss_dssp HHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEE---EEEEHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccCCCC---CcccccchHHH---HHHHHHHHH
Confidence 58999999986 23466888876 36765532211110 01111 11111 222458999
Q ss_pred hhCCchhHHHHHHHHHHHHhh--h-ccCCeeeeeeeccCC-ceecccccccCCCchHHHhHHHHHhhcCch-HHHHHHHH
Q 047597 165 LTNDPIFEQVTKKAVLGIWAR--R-SKLNLVGAHINVFTG-EWTQKDAGIGTSIDSFYEYLLKAYLLFGDE-EYLYIFQE 239 (577)
Q Consensus 165 lTGd~kY~~~a~~~~~~L~~~--~-~~~GL~p~~i~~~tG-~~~~~~~~lGa~~DSyYEYLLK~~lL~gd~-~~~~~y~~ 239 (577)
+|||.+|.+.|+++++=+... . +..|+|-+.++..+. .-.+. ..+.-+.=.+-.=+.-+|-.++++ .|++.-.+
T Consensus 170 ~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~-~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~ 248 (370)
T PF03663_consen 170 ITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINK-TKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEK 248 (370)
T ss_dssp HH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT----HHHHHHHHHHHHHHHHHH--H-HHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCC-ceechHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 999999999999999866652 1 234777666654430 00000 000000011234466677888776 89999999
Q ss_pred HHHHHHhhccc
Q 047597 240 SYQAAMHYLFN 250 (577)
Q Consensus 240 a~~ai~~~L~~ 250 (577)
.++++++++..
T Consensus 249 la~~~~~~~~~ 259 (370)
T PF03663_consen 249 LADAAINHFFD 259 (370)
T ss_dssp HHHHHHHHHEE
T ss_pred HHHHHHHHhCC
Confidence 99999888553
No 24
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=61.56 E-value=1.5e+02 Score=35.47 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=52.1
Q ss_pred cccccchhchhhHHHhhCCchhHHHHHHHHHHHHhhhccCCeeeeeeeccCCceecccccccCCCchHHHhHHHHHhhcC
Q 047597 150 AGGGTLTLEFGVLSRLTNDPIFEQVTKKAVLGIWARRSKLNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFG 229 (577)
Q Consensus 150 Ae~GSl~LEF~~LS~lTGd~kY~~~a~~~~~~L~~~~~~~GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYLLK~~lL~g 229 (577)
.+.+.+.|=+.+|.++|+|++|.+.|.++++.+.......+. . +...|-+ -|..|-. =.|+..+..++
T Consensus 491 ~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~---~-~~~~gl~------~G~aGi~--~~L~~l~~~~~ 558 (825)
T cd04792 491 DGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKT---D-DTGIGAF------SGLGGIL--YALTHLGKLLK 558 (825)
T ss_pred CChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccc---c-ccCceeE------echhHHH--HHHHHHHHHcC
Confidence 344566788899999999999999999988877654222100 0 0011111 1222222 22455666788
Q ss_pred chHHHHHHHHHHHHHHhhc
Q 047597 230 DEEYLYIFQESYQAAMHYL 248 (577)
Q Consensus 230 d~~~~~~y~~a~~ai~~~L 248 (577)
+++|.+...++++.+.+..
T Consensus 559 ~~~~~~~a~~~~~~l~~~~ 577 (825)
T cd04792 559 DDRLLNLAKEILDLIDELI 577 (825)
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 8888777666666655543
No 25
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=53.53 E-value=72 Score=32.88 Aligned_cols=88 Identities=17% Similarity=0.095 Sum_probs=53.8
Q ss_pred cchhchhhHHHhhCCchhHHHHHHHHHHHHhhhcc--CCeeeeeeeccCCceecccccccCCCchHHHhHHHHHhhcCch
Q 047597 154 TLTLEFGVLSRLTNDPIFEQVTKKAVLGIWARRSK--LNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFGDE 231 (577)
Q Consensus 154 Sl~LEF~~LS~lTGd~kY~~~a~~~~~~L~~~~~~--~GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYLLK~~lL~gd~ 231 (577)
.+.+=+..|.+.|||++|.+.|.++.+.+.+.... .|.+. ...+. .....|-.+.-..---|++.+..++++
T Consensus 143 Gi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~----~~~~~--~~~~~wchG~aGi~~~l~~l~~~~~d~ 216 (321)
T cd04791 143 GIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQ----VDEGA--RLLPYLCSGSAGLGLLMLRLEAITGDK 216 (321)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceE----cCCCC--ccCcccCCCcHHHHHHHHHHHHhcCCH
Confidence 34444778999999999999999999887654321 22221 11110 011223333333345677888889998
Q ss_pred HHHHHHHHHHHHHHhh
Q 047597 232 EYLYIFQESYQAAMHY 247 (577)
Q Consensus 232 ~~~~~y~~a~~ai~~~ 247 (577)
++++.-+++++.+.+.
T Consensus 217 ~~~~~a~~~~~~~~~~ 232 (321)
T cd04791 217 RWRDEADGIAHAALSS 232 (321)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8887766666666544
No 26
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.76 E-value=21 Score=40.50 Aligned_cols=61 Identities=18% Similarity=0.346 Sum_probs=43.5
Q ss_pred hcccchhhhhhcCc----------cCcccccccCCCCCCCCCcCCCCCCCCCCCcceeccccccchhchhhHHHhhCCch
Q 047597 101 VLGGLLSAHLIARS----------SPRLLPAFDTPTGIPFGSVNLLHGVDEHESKITSTAGGGTLTLEFGVLSRLTNDPI 170 (577)
Q Consensus 101 ~LGGLLSAY~LsgD----------ad~LlpAFdTpsGiP~~~vnl~~g~~~~~~~~t~lAe~GSl~LEF~~LS~lTGd~k 170 (577)
.+-|++.+|.+||. ||.+...|+.-++ +.....+=+-+-|.+..|.++||+++
T Consensus 136 Lieg~va~~qaTGkr~lldV~~rlADhi~tvfgp~~~-----------------q~~g~~gH~eielAl~~Ly~~Tg~~r 198 (589)
T COG3533 136 LIEGGVAAHQATGKRRLLDVVCRLADHIATVFGPEED-----------------QVPGYCGHPEIELALAELYRLTGDQR 198 (589)
T ss_pred HHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcCcccc-----------------ccccccCCCchhHHHHHHHHHhcChH
Confidence 45688899999986 7777777763222 11223344555677889999999999
Q ss_pred hHHHHHHH
Q 047597 171 FEQVTKKA 178 (577)
Q Consensus 171 Y~~~a~~~ 178 (577)
|.++|+.-
T Consensus 199 YL~LA~~F 206 (589)
T COG3533 199 YLDLARRF 206 (589)
T ss_pred HHHHHHHH
Confidence 99998863
No 27
>PF12060 DUF3541: Domain of unknown function (DUF3541); InterPro: IPR021928 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length.
Probab=43.44 E-value=14 Score=37.26 Aligned_cols=29 Identities=38% Similarity=0.595 Sum_probs=23.7
Q ss_pred CCCccCCchhHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 047597 320 GQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMVASL 357 (577)
Q Consensus 320 ~~~~Y~LRPE~IESlfyLyR~TGD~kYrd~gW~if~ai 357 (577)
.+.||-|| |||.|||+||....|.=...+
T Consensus 28 ~~GHyglR---------mYRqT~d~kYaaa~~~D~~rV 56 (227)
T PF12060_consen 28 KQGHYGLR---------MYRQTGDPKYAAAVWSDMARV 56 (227)
T ss_pred hcchHHHH---------HHHHhccHHHHHHHHHHHHHH
Confidence 35788888 999999999999999655443
No 28
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=38.72 E-value=89 Score=33.22 Aligned_cols=92 Identities=5% Similarity=0.037 Sum_probs=56.9
Q ss_pred hhchhhHHHh---hCCchhHHHHHHHHHHHHhhhccCCeeeeeeeccCCceeccccccc--CCCchHHHhHHHHHhhcC-
Q 047597 156 TLEFGVLSRL---TNDPIFEQVTKKAVLGIWARRSKLNLVGAHINVFTGEWTQKDAGIG--TSIDSFYEYLLKAYLLFG- 229 (577)
Q Consensus 156 ~LEF~~LS~l---TGd~kY~~~a~~~~~~L~~~~~~~GL~p~~i~~~tG~~~~~~~~lG--a~~DSyYEYLLK~~lL~g- 229 (577)
+-|...|+++ |+|++|.+.+.++++.|.......|=+|.+. +..+.+.. .+++- ++. .--|-|...+...+
T Consensus 47 ~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~-p~~~~Y~~-~ITfND~am~-~vl~lL~~i~~~~~~ 123 (290)
T TIGR02474 47 VTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFY-PLKGGYSD-AITYNDNAMV-NVLTLLDDIANGKDP 123 (290)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCccc-CCcCCccc-ccccCcHHHH-HHHHHHHHHHhccCC
Confidence 5566666665 9999999999999999999887788888765 44443322 12221 111 22334444332211
Q ss_pred ----chHHHHHHHHHHHHHHhhccc
Q 047597 230 ----DEEYLYIFQESYQAAMHYLFN 250 (577)
Q Consensus 230 ----d~~~~~~y~~a~~ai~~~L~~ 250 (577)
++..+.....|++..+++++.
T Consensus 124 ~~~~~~~~~~r~~~Ai~Rgid~ILk 148 (290)
T TIGR02474 124 FDVFPDSTRTRAKTAVTKGIECILK 148 (290)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHH
Confidence 223456677788888887764
No 29
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.69 E-value=38 Score=38.49 Aligned_cols=46 Identities=33% Similarity=0.389 Sum_probs=36.6
Q ss_pred HhhhCCCCCccccCccccccCCCccCCchhHHHHHHHHHHHcCChhHHHHHHHHH
Q 047597 300 WKRYGFTPEGFNLATLTIQQGQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMV 354 (577)
Q Consensus 300 ~~~~Gl~PE~f~~~~~~~~~~~~~Y~LRPE~IESlfyLyR~TGD~kYrd~gW~if 354 (577)
|..+.++|+.= .-..|.--||+=|.+-=|||+|||++|.+.|-...
T Consensus 162 hi~tvfgp~~~---------q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi 207 (589)
T COG3533 162 HIATVFGPEED---------QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFI 207 (589)
T ss_pred hhhhhcCcccc---------ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHH
Confidence 34567778752 22468888999999999999999999999987654
No 30
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=38.20 E-value=1.1e+02 Score=34.09 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=56.7
Q ss_pred HHhhCCchhHHHHHHHHHHHHhhhc--cCCeeeeeeeccCC----ceecccccccC-CCch-------HHHhHHHHHhhc
Q 047597 163 SRLTNDPIFEQVTKKAVLGIWARRS--KLNLVGAHINVFTG----EWTQKDAGIGT-SIDS-------FYEYLLKAYLLF 228 (577)
Q Consensus 163 S~lTGd~kY~~~a~~~~~~L~~~~~--~~GL~p~~i~~~tG----~~~~~~~~lGa-~~DS-------yYEYLLK~~lL~ 228 (577)
+++-+++.+.+.|.+..+.-+.... +.||.|..++.... .|.......+. -.|. .-|-+-=+|-+|
T Consensus 292 ~~~~~~~~~~~~A~~l~~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~T 371 (452)
T PF01532_consen 292 AKLFNDEGDLELAEELTETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRAT 371 (452)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH
T ss_pred hcccCchhHHHHHHHHHHHHHHHHHhcccCCCceEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEc
Confidence 3445678999999998887776543 45999999886641 22211111110 1222 235555578899
Q ss_pred CchHHHHHHHHHHHHHHhhcccC
Q 047597 229 GDEEYLYIFQESYQAAMHYLFND 251 (577)
Q Consensus 229 gd~~~~~~y~~a~~ai~~~L~~~ 251 (577)
||+.|+++=-++++++.+|....
T Consensus 372 gD~~yre~gw~if~ai~k~~r~~ 394 (452)
T PF01532_consen 372 GDPKYREWGWDIFQAIEKYCRTE 394 (452)
T ss_dssp -BHHHHHHHHHHHHHHHHHTEET
T ss_pred CCchHHHHHHHHHHHHHHhcccc
Confidence 99999999889999999998654
No 31
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=34.66 E-value=33 Score=34.81 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=23.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHhHhccc
Q 047597 333 STYLLYKATRDPRYLDAGRDMVASLQYGTRC 363 (577)
Q Consensus 333 SlfyLyR~TGD~kYrd~gW~if~aie~~~rt 363 (577)
.+-.+|++|||++|.+.+-+++.++-..+++
T Consensus 64 ~lAlay~~Tgd~~YA~~a~~iL~~W~~~~~~ 94 (272)
T PF05426_consen 64 ALALAYYLTGDEKYADKAAEILNAWALNYKT 94 (272)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHccCcc
Confidence 3557899999999999999999998554544
No 32
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=34.26 E-value=99 Score=33.50 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHcCCh-hHHHHHHHHHHHHhHhcccCC
Q 047597 329 ELIESTYLLYKATRDP-RYLDAGRDMVASLQYGTRCPC 365 (577)
Q Consensus 329 E~IESlfyLyR~TGD~-kYrd~gW~if~aie~~~rt~~ 365 (577)
=+|..+-+|||+|+|+ +|++.|-++.++..++.-.+.
T Consensus 224 ~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~~~~~~ 261 (370)
T PF03663_consen 224 VFLGAAAYLYNATNDEQTYLDRAEKLADAAINHFFDNG 261 (370)
T ss_dssp HHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHEETT
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhCCCC
Confidence 3678999999999888 999999999999988754443
No 33
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=33.50 E-value=31 Score=37.38 Aligned_cols=39 Identities=33% Similarity=0.503 Sum_probs=33.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHhHhcccC-Ccccccc
Q 047597 333 STYLLYKATRDPRYLDAGRDMVASLQYGTRCP-CGYCHIS 371 (577)
Q Consensus 333 SlfyLyR~TGD~kYrd~gW~if~aie~~~rt~-~Gya~i~ 371 (577)
.+|.||.-||||+|++++-++-+.+...-||. +||-+..
T Consensus 87 ~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~ 126 (357)
T COG4225 87 TLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKV 126 (357)
T ss_pred eeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCcccccc
Confidence 37889999999999999999999998888987 5676543
No 34
>PF10847 DUF2656: Protein of unknown function (DUF2656); InterPro: IPR020325 This entry contains uncharacterised proteins from the cpeY 3'-region. They have no known function, but are found in the phycobilisome.
Probab=33.09 E-value=1.1e+02 Score=28.74 Aligned_cols=58 Identities=19% Similarity=0.373 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcccccC--CcCCC---------CCCCcceEEEeccchhhhcCChHHHHHHHHHHh
Q 047597 16 DEVREMFYHAFDGYMEHAFPLDELRPLS--CEGED---------SLGGYALTLVDSLDTLALLGDRERFTTSVEWIG 81 (577)
Q Consensus 16 ~~VK~aF~hAW~~Y~~~Awg~DEl~PlS--~~~~d---------~~gg~g~TLVDSLDTL~IMGl~eEf~~A~~~V~ 81 (577)
++|.+....||..|++-. ||+...-+- ++-.| .-|.||+-+|+.-| .+.|-+|++|=.
T Consensus 56 ~~~~~~~v~aw~~~R~~~-g~~~~h~ilaLGGrKds~a~p~sPLQ~G~WGVDVVEt~d-------~~~FL~aInWea 124 (132)
T PF10847_consen 56 DEMAEELVRAWKQYRNSL-GHSMNHDILALGGRKDSPASPGSPLQEGEWGVDVVETAD-------PDAFLQAINWEA 124 (132)
T ss_pred HHHHHHHHHHHHHHHHhh-cCCccchhhhhccccCCCCCCCCCCccCccceeEEecCC-------HHHHHHHcChhh
Confidence 456667778999999855 888765322 11112 14679999999866 578888888854
No 35
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=29.52 E-value=1e+03 Score=28.37 Aligned_cols=178 Identities=15% Similarity=0.118 Sum_probs=95.7
Q ss_pred chhchhhHHHhhCCchhHHHHHHHHHHHHhhhcc--CCeeeeeeeccCCceecccccccCCCchHHHhHHHHHhhcCchH
Q 047597 155 LTLEFGVLSRLTNDPIFEQVTKKAVLGIWARRSK--LNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFGDEE 232 (577)
Q Consensus 155 l~LEF~~LS~lTGd~kY~~~a~~~~~~L~~~~~~--~GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYLLK~~lL~gd~~ 232 (577)
+.+=+..|.+.|+++.|.+.|.++.+.+...... .+..+ . +. ....+|.-+.-..--.|++.+..+++++
T Consensus 592 ii~~Ll~l~~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~-----~-~~--~~~~G~aHG~sGi~~aL~~l~~~~~d~~ 663 (825)
T cd04792 592 LILVLLSLYELFLSERFLDLALKCGDHLLENASNEDGGIGP-----A-EQ--PNLTGFAHGASGIAWALLRLYKVTGDSR 663 (825)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHhhhhccCCccc-----c-cc--cccccccccHHHHHHHHHHHHHHcCcHH
Confidence 3344568889999999999999999988764322 12110 0 00 1223555555556668999999999998
Q ss_pred HHHHHHHHHHHHHhhccc--CCcceEeccCCCccccccccccccc---cccch-hh--cCC---CCh-HHH-HHH-HHHH
Q 047597 233 YLYIFQESYQAAMHYLFN--DPWYVEVNMDSAAIVWPLFNSLQAF---WPGLQ-VL--AGD---IDP-AVR-THA-AFFS 298 (577)
Q Consensus 233 ~~~~y~~a~~ai~~~L~~--~p~~~~~~~~sg~~~~~~~dhL~CF---~pGml-aL--gg~---~~~-a~~-~~~-~~~~ 298 (577)
+.+...++++..++.... ..|.. + . ......++ .+|.+ ++ ..+ .+. ... ... +...
T Consensus 664 ~~~~a~~~l~~~~~~~~~~~~~w~~--~--~------~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~ 733 (825)
T cd04792 664 YLKLAHKALKYERRLFSEEGWNWPR--K--D------GNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKT 733 (825)
T ss_pred HHHHHHHHHHHHHHhcCHhhcCCCC--c--C------cCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 887776666644333211 11210 0 0 00111122 23322 11 011 111 111 011 1111
Q ss_pred HHhhhCCCCCccccCccccccCCCccCCchhHHHHHHHHHHHcCChhHHHHHHHHHHHHhHhccc
Q 047597 299 VWKRYGFTPEGFNLATLTIQQGQKSYPLRPELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRC 363 (577)
Q Consensus 299 ~~~~~Gl~PE~f~~~~~~~~~~~~~Y~LRPE~IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt 363 (577)
++ ..|.. . .... ---.+-.+|.+.++++.|+|++|++++-..++.+......
T Consensus 734 ~~-~~~~~-~-----~~sl------CHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~~l~~~~~~ 785 (825)
T cd04792 734 TL-KEGFG-N-----NHSL------CHGDLGNLEILLYAAKAFGDEKLQELANSLAIKVLSQGKK 785 (825)
T ss_pred HH-HhcCC-C-----CCee------cCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 12 12211 0 0011 1223457899999999999999999999999888665554
No 36
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=28.10 E-value=1.4e+02 Score=31.99 Aligned_cols=80 Identities=8% Similarity=0.064 Sum_probs=51.2
Q ss_pred hchhhHHHhhCCchhHHHHHHHHHHHHhhhccCCeeeeeeeccCCceecccccccCCCchHHHhHHHHHhhcCchHHHHH
Q 047597 157 LEFGVLSRLTNDPIFEQVTKKAVLGIWARRSKLNLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFGDEEYLYI 236 (577)
Q Consensus 157 LEF~~LS~lTGd~kY~~~a~~~~~~L~~~~~~~GL~p~~i~~~tG~~~~~~~~lGa~~DSyYEYLLK~~lL~gd~~~~~~ 236 (577)
+-+..+++.++|+.|.+.+.++++.+++.....+ +..+..++.... | --+.|++.+-.++++++++.
T Consensus 251 ~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~lChG~~-----G--~~~~l~~~~~~~~~~~~~~~ 317 (382)
T cd04793 251 RALQLAGKALDDQKLQEAAEKILKAALKDKKQLS------KLISPTLCHGLA-----G--LLFIFYLLYKDTNTNEFKSA 317 (382)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhhc------cCCCCCcCccHH-----H--HHHHHHHHHHHhCCcHHHHH
Confidence 3345677889999999999999888775321110 111112222222 2 34888999999999888777
Q ss_pred HHHHHHHHHhhcc
Q 047597 237 FQESYQAAMHYLF 249 (577)
Q Consensus 237 y~~a~~ai~~~L~ 249 (577)
....++.++....
T Consensus 318 a~~~~~~~l~~~~ 330 (382)
T cd04793 318 LEYLLNQIISSYS 330 (382)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666665544
No 37
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=25.69 E-value=83 Score=31.32 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHHhHhcccCCccc
Q 047597 329 ELIESTYLLYKATRDPRYLDAGRDMVASLQYGTRCPCGYC 368 (577)
Q Consensus 329 E~IESlfyLyR~TGD~kYrd~gW~if~aie~~~rt~~Gya 368 (577)
+.|..+-=+|.+|||++|.+.|-+.++.+..-+ .++|..
T Consensus 34 ~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~-~~GG~~ 72 (189)
T PF06662_consen 34 QAISVLARAYQLTGDEKYLDAAKKALNSFKVPV-EEGGVL 72 (189)
T ss_pred HHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChH-hhCCee
Confidence 677778889999999999999999999887543 234543
No 38
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=22.77 E-value=1.7e+02 Score=31.07 Aligned_cols=87 Identities=11% Similarity=0.084 Sum_probs=48.4
Q ss_pred hHHHhhCCchhHHHHHHHHHHHHhhhccCCeeeeeeeccCCceecccccc--cCCCchHHHhHHHHHhhcCc-----hHH
Q 047597 161 VLSRLTNDPIFEQVTKKAVLGIWARRSKLNLVGAHINVFTGEWTQKDAGI--GTSIDSFYEYLLKAYLLFGD-----EEY 233 (577)
Q Consensus 161 ~LS~lTGd~kY~~~a~~~~~~L~~~~~~~GL~p~~i~~~tG~~~~~~~~l--Ga~~DSyYEYLLK~~lL~gd-----~~~ 233 (577)
++-+.|+|++|.+.+.++++.|....-..|=+|.......| +. ..+|+ +++.+ --+-|...+--.++ ++.
T Consensus 50 ~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~-Y~-~~ITfNDdam~~-vl~lL~~v~~~~~~~~~v~~~~ 126 (289)
T PF09492_consen 50 RVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGG-YH-DHITFNDDAMVN-VLELLRDVAEGKGDFAFVDESL 126 (289)
T ss_dssp HHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SG-GG-GSEE-GGGHHHH-HHHHHHHHHCT-TTSTTS-HHH
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCC-CC-CceEEccHHHHH-HHHHHHHHHhhcCCccccCHHH
Confidence 35567899999999999999999876667777876543332 21 22332 11111 12333333332232 356
Q ss_pred HHHHHHHHHHHHhhccc
Q 047597 234 LYIFQESYQAAMHYLFN 250 (577)
Q Consensus 234 ~~~y~~a~~ai~~~L~~ 250 (577)
+...++|++..++.++.
T Consensus 127 ~~r~~~A~~kgi~ciL~ 143 (289)
T PF09492_consen 127 RARARAAVDKGIDCILK 143 (289)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77778888888877764
No 39
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=21.84 E-value=54 Score=35.59 Aligned_cols=64 Identities=30% Similarity=0.409 Sum_probs=41.2
Q ss_pred HHHhhCCchhHHHHHHHHHHHHhhhccCCeeeeeeeccCCceecccccccCCCchHH--HhHHHHHhhcCchH
Q 047597 162 LSRLTNDPIFEQVTKKAVLGIWARRSKLNLVGAHINVFTGEWTQKDAGIGTSIDSFY--EYLLKAYLLFGDEE 232 (577)
Q Consensus 162 LS~lTGd~kY~~~a~~~~~~L~~~~~~~GL~p~~i~~~tG~~~~~~~~lGa~~DSyY--EYLLK~~lL~gd~~ 232 (577)
|-+.||||.|.++++.+++.|-+-...+.-+...-|+.||.-- -..|||+ |-+--.|+++.|++
T Consensus 371 lykat~dp~yl~v~k~iidninkyakvpcgfaalkdirt~~~e-------d~mdsf~lae~fkylylifad~e 436 (587)
T KOG2430|consen 371 LYKATGDPHYLEVAKQIIDNINKYAKVPCGFAALKDIRTGSHE-------DQMDSFFLAEMFKYLYLIFADKE 436 (587)
T ss_pred eecccCCchHHHHHHHHHHHHhhheeCCchHHHHHHHhhcchH-------HHHHHHHHHHHHHHHHheecCHH
Confidence 7789999999999999999886643322222222344444321 2357887 55555678887765
No 40
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=20.99 E-value=1.1e+02 Score=27.21 Aligned_cols=30 Identities=40% Similarity=0.541 Sum_probs=22.7
Q ss_pred HhHHHHHhhcCchHHHHHHHHHHHHHHhhc
Q 047597 219 EYLLKAYLLFGDEEYLYIFQESYQAAMHYL 248 (577)
Q Consensus 219 EYLLK~~lL~gd~~~~~~y~~a~~ai~~~L 248 (577)
|--+..|+|+|++.|++-|.++...+.+.+
T Consensus 26 e~~~RgYlltgd~~~l~~y~~~~~~~~~~l 55 (138)
T PF05227_consen 26 ESALRGYLLTGDPEFLEPYQEARARLEKAL 55 (138)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHcCCHhhhchHHHHHHHHHHHH
Confidence 456789999999999999988887776655
No 41
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=20.96 E-value=74 Score=34.45 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=0.0
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 047597 337 LYKATRDPRYLDAGRDMVA 355 (577)
Q Consensus 337 LyR~TGD~kYrd~gW~if~ 355 (577)
|||+|+|.+|..+|-+.-+
T Consensus 338 LyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 338 LYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred HHHHcCcHHHHHHHHHHHH
No 42
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=20.41 E-value=3.5e+02 Score=31.54 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=55.1
Q ss_pred cccchhhcCCCChHHHHHHHHHHHHhhhCCCCCccccCccccccCCCccC---CchhHHHHHHHHHHHcCChhHHHHHHH
Q 047597 276 WPGLQVLAGDIDPAVRTHAAFFSVWKRYGFTPEGFNLATLTIQQGQKSYP---LRPELIESTYLLYKATRDPRYLDAGRD 352 (577)
Q Consensus 276 ~pGmlaLgg~~~~a~~~~~~~~~~~~~~Gl~PE~f~~~~~~~~~~~~~Y~---LRPE~IESlfyLyR~TGD~kYrd~gW~ 352 (577)
+||++...++.+.|.+....+.+ +.+-|+.|..|.-.. ..+.|. --|=.|.++.=.|+.|||....+.-|.
T Consensus 302 l~Gl~l~tgr~~~A~~iL~~fa~-~~~~GliPN~~~~~g-----~~p~YntvDAtLWfi~al~~Y~~~tgD~~~l~~l~p 375 (575)
T TIGR01561 302 LEGLLLIDKQFDEAKEAILKFAN-LCKRGLIPNNFIAFG-----GDPIYNGVDASLWAIHAIDKTFAYSQDFLFIRDVVD 375 (575)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHH-HhHCCCCCCccCCCC-----CCccCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 57887778888888877776655 347899998874321 112232 123456777778899999998888888
Q ss_pred HHHHHhH-hcc
Q 047597 353 MVASLQY-GTR 362 (577)
Q Consensus 353 if~aie~-~~r 362 (577)
..+.|-. +++
T Consensus 376 ~l~~ii~~y~~ 386 (575)
T TIGR01561 376 KVLDIIDNYCA 386 (575)
T ss_pred HHHHHHHHHhc
Confidence 7777655 444
No 43
>cd08639 DNA_pol_A_Aquificae_like Phylum Aquificae Pol A is different from Escherichia coli Pol A by three signature sequences. Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. Pol I uses its 5' nucleas
Probab=20.36 E-value=1.4e+02 Score=32.06 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=62.2
Q ss_pred cchhhhcCChHHHHHHHHHHhhhccccccccc-cceeehhhhcccchhhhhh------cCccCccccccc---CCCC-CC
Q 047597 61 LDTLALLGDRERFTTSVEWIGKNLQFDINKTV-SVFETTIRVLGGLLSAHLI------ARSSPRLLPAFD---TPTG-IP 129 (577)
Q Consensus 61 LDTL~IMGl~eEf~~A~~~V~~~l~F~~~~~V-svFETtIR~LGGLLSAY~L------sgDad~LlpAFd---TpsG-iP 129 (577)
|||.++=.+..|.++-+.-+..++.-.....+ -+.| .|-+.-|++.|.- .++..|+.|.|+ |.|| +-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lle--~r~~~kl~~t~~~~l~~~~~~~~grih~~~~~~gt~TGRlS 78 (324)
T cd08639 1 LDLERWKELEKELERERQEAAKELYIEEHPAVRLLLE--YRKLNKLISTFGEKLPKHIHPVTGRIHPSFNQIGAASGRMS 78 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHH--HHHHhHHHHHHHHHHHHHccCCCCceeeeEEecccceeehh
Confidence 68888888888888777766554431111111 1222 5566667776631 122348888887 4444 33
Q ss_pred CCCcCCCCCCCC----------CCCcceeccccccchhchhhHHHhhCCchhHHHHH
Q 047597 130 FGSVNLLHGVDE----------HESKITSTAGGGTLTLEFGVLSRLTNDPIFEQVTK 176 (577)
Q Consensus 130 ~~~vnl~~g~~~----------~~~~~t~lAe~GSl~LEF~~LS~lTGd~kY~~~a~ 176 (577)
...-|+.+ .+. .+......|+.. |+|.+.|++++||+.+.++-.
T Consensus 79 ~~~PnlQn-iP~~~~iR~~f~a~~G~~lv~aDys--qiElRilA~ls~D~~l~~~~~ 132 (324)
T cd08639 79 CSNPNLQQ-IPREREFRRCFVAPEGNKLIIADYS--QIELRIAAEISGDERMISAYQ 132 (324)
T ss_pred hccCcccc-CCCCcccceeEEcCCCCEEEEechh--hhHHHHHHHHhCCHHHHHHHh
Confidence 33334432 111 111111223333 899999999999998876544
No 44
>COG5041 SKB2 Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]
Probab=20.11 E-value=45 Score=33.75 Aligned_cols=49 Identities=29% Similarity=0.403 Sum_probs=36.8
Q ss_pred hcCChHH---HHHHHHHHhhhccccc--cccccceeehhhhcccchhh-hhhcCc
Q 047597 66 LLGDRER---FTTSVEWIGKNLQFDI--NKTVSVFETTIRVLGGLLSA-HLIARS 114 (577)
Q Consensus 66 IMGl~eE---f~~A~~~V~~~l~F~~--~~~VsvFETtIR~LGGLLSA-Y~LsgD 114 (577)
+|||..| |++|++.|.....-+. +..|++.|+.-|.|=|||-| |-+|..
T Consensus 53 ltgL~~~Vp~y~~~ldlILD~~~~~~~e~~~~d~iE~sa~~LYgLIHaRyIiT~~ 107 (242)
T COG5041 53 LTGLSREVPHYSEVLDLILDKLAPSNLENDEVDIIEESARQLYGLIHARYIITKS 107 (242)
T ss_pred ccchhhccchHHHHHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHhhheeeHH
Confidence 5677766 7899999976553322 24589999999999999998 666654
Done!