BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047598
(1112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 132/326 (40%), Gaps = 54/326 (16%)
Query: 210 IPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKP 269
+ I GMAG GK+ LA E D SL F + WV + D + L TR
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVH-WVSVGKQ-DKSGLLMKLQNLCTRLD 207
Query: 270 CHLNTLNEVQVDLKTAVDGKRF---------LLVLDDVWNEDYSLWVDLKAPLLAAAPNS 320
+ + ++++ A D R LL+LDDVW+ WV L A
Sbjct: 208 QDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----WV-----LKAFDSQC 258
Query: 321 KMIITTRHSHVA-STMGPIKHYNLKRLLDE----DCWSIFIKHAYESRSLKAHQISELFR 375
++++TTR V S MGP ++ L + + S+F+ +AH I
Sbjct: 259 QILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSI----- 313
Query: 376 KKVVGKCGGLPLAAKSLGGLLRT--TRCDLWEDILDSKIWDLPQQS------GILPVLRL 427
+ +C G PL +G LLR R + + L +K + ++S + + +
Sbjct: 314 ---IKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSI 370
Query: 428 SYHHLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGSQCFHDL 487
S L +K + +I KD + K L LW E++ED+ +
Sbjct: 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW--------DMETEEVEDI----LQEF 418
Query: 488 VSRS-IFQPSSRNSCKFVMHDLVHDL 512
V++S +F + S ++ +HDL D
Sbjct: 419 VNKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 132/326 (40%), Gaps = 54/326 (16%)
Query: 210 IPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKP 269
+ I GMAG GK+ LA E D SL F + WV + D + L TR
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVH-WVSVGKQ-DKSGLLMKLQNLCTRLD 213
Query: 270 CHLNTLNEVQVDLKTAVDGKRF---------LLVLDDVWNEDYSLWVDLKAPLLAAAPNS 320
+ + ++++ A D R LL+LDDVW+ WV L A
Sbjct: 214 QDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----WV-----LKAFDSQC 264
Query: 321 KMIITTRHSHVA-STMGPIKHYNLKRLLDE----DCWSIFIKHAYESRSLKAHQISELFR 375
++++TTR V S MGP ++ L + + S+F+ +AH I
Sbjct: 265 QILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSI----- 319
Query: 376 KKVVGKCGGLPLAAKSLGGLLRT--TRCDLWEDILDSKIWDLPQQS------GILPVLRL 427
+ +C G PL +G LLR R + + L +K + ++S + + +
Sbjct: 320 ---IKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSI 376
Query: 428 SYHHLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGSQCFHDL 487
S L +K + +I KD + K L LW E++ED+ +
Sbjct: 377 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW--------DMETEEVEDI----LQEF 424
Query: 488 VSRS-IFQPSSRNSCKFVMHDLVHDL 512
V++S +F + S ++ +HDL D
Sbjct: 425 VNKSLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 133/326 (40%), Gaps = 54/326 (16%)
Query: 210 IPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCIS--DVFDVLSISKALLESITR 267
+ I GMAG GK+ LA E D SL F + WV I D +L + L + +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVH-WVSIGKQDKSGLLMKLQNLCMRLDQ 208
Query: 268 KPCHLNTL----NEVQVDLKTAVDGK--RFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSK 321
+ L E + L+ + K R LL+LDDVW+ WV L A +
Sbjct: 209 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----WV-----LKAFDNQCQ 259
Query: 322 MIITTRHSHVA-STMGPIKHY-----NLKRLLDEDCWSIFIKHAYESRSLKAHQISELFR 375
+++TTR V S MGP KH L R + S+F+ E +AH I
Sbjct: 260 ILLTTRDKSVTDSVMGP-KHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSI----- 313
Query: 376 KKVVGKCGGLPLAAKSLGGLLRT--TRCDLWEDILDSKIWDLPQQS------GILPVLRL 427
+ +C G PL +G LLR R + L +K + ++S + + +
Sbjct: 314 ---IKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSI 370
Query: 428 SYHHLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGSQCFHDL 487
S L +K + +I KD + K L LW E++ED+ +
Sbjct: 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW--------DLETEEVEDI----LQEF 418
Query: 488 VSRS-IFQPSSRNSCKFVMHDLVHDL 512
V++S +F + S + +HDL D
Sbjct: 419 VNKSLLFCNRNGKSFCYYLHDLQVDF 444
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 132/326 (40%), Gaps = 54/326 (16%)
Query: 210 IPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCIS--DVFDVLSISKALLESITR 267
+ I GMAG GK+ LA E D SL F + WV I D +L + L + +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVH-WVSIGKQDKSGLLMKLQNLCMRLDQ 215
Query: 268 KPCHLNTL----NEVQVDLKTAVDGK--RFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSK 321
+ L E + L+ + K R LL+LDDVW+ WV L A +
Sbjct: 216 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----WV-----LKAFDNQCQ 266
Query: 322 MIITTRHSHVA-STMGPIKHY-----NLKRLLDEDCWSIFIKHAYESRSLKAHQISELFR 375
+++TT V S MGP KH L R + S+F+ E +AH I
Sbjct: 267 ILLTTSDKSVTDSVMGP-KHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSI----- 320
Query: 376 KKVVGKCGGLPLAAKSLGGLLRT--TRCDLWEDILDSKIWDLPQQS------GILPVLRL 427
+ +C G PL +G LLR R + L +K + ++S + + +
Sbjct: 321 ---IKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSI 377
Query: 428 SYHHLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGSQCFHDL 487
S L +K + +I KD + K L LW E++ED+ +
Sbjct: 378 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW--------DLETEEVEDI----LQEF 425
Query: 488 VSRS-IFQPSSRNSCKFVMHDLVHDL 512
V++S +F + S + +HDL D
Sbjct: 426 VNKSLLFCNRNGKSFCYYLHDLQVDF 451
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 20/147 (13%)
Query: 588 LPKF--KRLRVLSLQRYYIG-----ELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNL 640
LP+F + R+ LQ I EL + + L L LA +R LP S SL L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRL 152
Query: 641 EILILRNCSRLKKLPSKM---------RNLINLHHLDIKGANLLREMPLGMKELKNLRTL 691
L +R C L +LP + + L+NL L ++ +R +P + L+NL++L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211
Query: 692 ---SNFIVGKGEAISGLEDLKNLKFLG 715
++ + G AI L L+ L G
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRG 238
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 45/98 (45%)
Query: 594 LRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKK 653
L+ L L+ I L S +L+ L+ L + ++ + L + + L LE L LR C+ L+
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 654 LPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTL 691
P L L +K + L +PL + L L L
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 580 TGI-VLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLAD-TMIRTLPESTNSL 637
TGI L + + L+ L ++ + L + L L L+L T +R P
Sbjct: 193 TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252
Query: 638 LNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKEL 685
L+ LIL++CS L LP + L L LD++G L +P + +L
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 29/147 (19%)
Query: 833 QGLTKLKSIGSEVYGKGFSKPFQSL--EILSFENLPEWEYWDTNIKGNDHADRVEIFPRL 890
QGL L+S+ E G +SL I + +NL + ++ + A + P+L
Sbjct: 180 QGLVNLQSLRLEWTG------IRSLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKL 231
Query: 891 HKLSIMEC-------PKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEH 943
+L + C P G+ P + ++ +C L LP D+HRL LE
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAP----------LKRLILKDCSNLLTLPLDIHRLTQLEK 281
Query: 944 LRIGQCPSILSFPE--EGFPTNLASLV 968
L + C ++ P P N LV
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILV 308
Score = 33.1 bits (74), Expect = 0.96, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 49/148 (33%)
Query: 889 RLHKLSIMECPKLSGKLPELLPS------------LETLVVA-------TFVIANCEKLE 929
RL +LSI CP+L+ +LPE L S L++L + IAN + L+
Sbjct: 151 RLRELSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209
Query: 930 ----------ALPNDMHRLNFLEHLRIGQCPSILSFPEEGFPTNLASLVIGGDVKMYKGL 979
AL +H L LE L + C ++ ++P + GG + + +
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP----------IFGGRAPLKRLI 259
Query: 980 IQ---------WGLHRLTALRRLEIDGC 998
++ +HRLT L +L++ GC
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 912 LETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEEGFPTNLASLVIGG 971
LETL +A L ALP + LN L L I CP + PE LAS G
Sbjct: 129 LETLTLAR------NPLRALPASIASLNRLRELSIRACPELTELPEP-----LASTDASG 177
Query: 972 DVKMYKGLIQWGLHRL--TALRRL 993
+ ++GL+ RL T +R L
Sbjct: 178 E---HQGLVNLQSLRLEWTGIRSL 198
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 368 HQISELFRKKVVG-------KCGGLPLAAKSLGG--LLRTTRCDLWEDILDSKIWD--LP 416
HQI KV G K G+P A +G ++WED+LD+ ++ P
Sbjct: 3 HQIVTTQYGKVKGTTENGVHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATVYGPVCP 62
Query: 417 QQSGILPVLRLSYHHLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQL 476
Q S + L LSY LP + C Y +F D + V +WI GG +E L
Sbjct: 63 QPSDL---LSLSYKELPRQSEDCL-YVNVFAPDTP-SQNLPVMVWIHGGAFYLGAGSEPL 117
Query: 477 ED 478
D
Sbjct: 118 YD 119
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 593 RLRVLSLQRYYIGELLVS-FEDLKLLRYLNLADTMIRTLPEST-NSLLNLEILILRNCSR 650
RL L L R + EL F L L+YL L D ++ LP+ T L NL L L +R
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NR 164
Query: 651 LKKLPSK-MRNLINLHHLDIKGANLLREMPLGMKELKNLRTL----SNFIVGKGEAISGL 705
+ +P + R L +L L + + P ++L L TL +N EA++ L
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224
Query: 706 EDLKNLKF 713
L+ L+
Sbjct: 225 RALQYLRL 232
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 593 RLRVLSLQRYYIGELLVS-FEDLKLLRYLNLADTMIRTLPEST-NSLLNLEILILRNCSR 650
RL L L R + EL F L L+YL L D ++ LP+ T L NL L L +R
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NR 163
Query: 651 LKKLPSK-MRNLINLHHLDIKGANLLREMPLGMKELKNLRTL----SNFIVGKGEAISGL 705
+ +P + R L +L L + + P ++L L TL +N EA++ L
Sbjct: 164 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 223
Query: 706 EDLKNLKF 713
L+ L+
Sbjct: 224 RALQYLRL 231
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 594 LRVLSLQRYYIGELLVS-FEDLKLLRYLNLADTMIRTLPEST-NSLLNLEILILRNCSRL 651
L L L R + EL F L L+YL L D ++ LP++T L NL L L +R+
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHG-NRI 164
Query: 652 KKLPS-KMRNLINLHHLDIKGANLLREMPLGMKELKNLRTL----SNFIVGKGEAISGLE 706
+P R L +L L + ++ R P ++L L TL +N + E + L
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLR 224
Query: 707 DLKNLKF 713
L+ L+
Sbjct: 225 SLQYLRL 231
>pdb|2IU7|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 33.1 bits (74), Expect = 0.88, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 160 SSASAAQQRLPSSSVPTERAVYGRDKDKARILKMV----LSTDEKTDDDANFRVIPIVGM 215
++A QQ LP+ + A D+D +L+M+ D D FR ++ +
Sbjct: 44 TAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMFRFYEMLQV 103
Query: 216 AGVGKTTLAREVYNDKSLNAKDFKFDIK 243
G L E + D ++A +FK D+K
Sbjct: 104 YGTTLKALVHEKFGDGIISAINFKLDVK 131
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 594 LRVLSLQRYYIGELLVS-FEDLKLLRYLNLADTMIRTLPEST-NSLLNLEILILRNCSRL 651
L+ L L +G L V F+ L L L+L + LP + + L++L+ L + C++L
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM-CCNKL 124
Query: 652 KKLPSKMRNLINLHHLDIKGANLLREMPLG 681
+LP + L +L HL + N L+ +P G
Sbjct: 125 TELPRGIERLTHLTHLALD-QNQLKSIPHG 153
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 588 LPKFKRLRVLSLQRYYIGELLV-------SFEDLKLLRYLNLADTMIRTLPEST 634
+P + R+ SL+R +GEL +FE L LRYLNLA +R +P T
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT 204
>pdb|2IVG|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 160 SSASAAQQRLPSSSVPTERAVYGRDKDKARILKMV----LSTDEKTDDDANFRVIPIVGM 215
++A QQ LP+ + A D+D +L+M+ D D +R ++ +
Sbjct: 44 TAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQV 103
Query: 216 AGVGKTTLAREVYNDKSLNAKDFKFDIK 243
G L E + D ++A +FK D+K
Sbjct: 104 YGTTLKALVHEKFGDGIISAINFKLDVK 131
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 594 LRVLSLQRYYIG----ELLVSFEDLKLLRYLNLADTMIRTLPESTNSLL----NLEILIL 645
LRVL+L + LL +DL R+LNL + S +LL +LEILIL
Sbjct: 426 LRVLNLSHCLLDTSNQHLLAGLQDL---RHLNLQGNSFQDGSISKTNLLQMVGSLEILIL 482
Query: 646 RNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNL 688
+C+ L L N++HLD+ +L + + LK L
Sbjct: 483 SSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL 525
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 578 YITGIVLSDLLPKFKRL---RVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPEST 634
Y+ G L++L + K L RVL L + L L+Y D M+ TLP
Sbjct: 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF 312
Query: 635 NSLLNLEIL 643
+L NL+ L
Sbjct: 313 GNLCNLQFL 321
>pdb|2IUO|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 160 SSASAAQQRLPSSSVPTERAVYGRDKDKARILKMV----LSTDEKTDDDANFRVIPIVGM 215
++A QQ LP+ + A D+D +L+M+ D D +R ++ +
Sbjct: 44 TAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQV 103
Query: 216 AGVGKTTLAREVYNDKSLNAKDFKFDIK 243
G L E + D + A +FK D+K
Sbjct: 104 YGTTLKALVHEKFGDGIIGAINFKLDVK 131
>pdb|3CDZ|B Chain B, Crystal Structure Of Human Factor Viii
Length = 684
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 239 KFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDV 298
+FD KAW SDV + L+ + CH NTLN T + FL + D+
Sbjct: 181 EFDCKAWAYFSDVDLEKDVHSGLIGPLLV--CHTNTLNPAHGRQVTVQEFALFLTIFDET 238
>pdb|2IVB|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 160 SSASAAQQRLPSSSVPTERAVYGRDKDKARILKMV----LSTDEKTDDDANFRVIPIVGM 215
++A QQ LP+ + A D+D +L+M+ D D +R ++ +
Sbjct: 44 TAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQV 103
Query: 216 AGVGKTTLAREVYNDKSLNAKDFKFDIK 243
G L E + D + A +FK D+K
Sbjct: 104 YGTTLKALVHEKFGDGIIAAINFKLDVK 131
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 588 LPKFKRLRVLSLQRYYIGELL-------VSFEDLKLLRYLNLADTMIRTLPESTNSLLNL 640
+P + RV SL+R +GEL +FE L LRYLNL ++ +P T +L+ L
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLT-ALVRL 180
Query: 641 EILIL 645
E L L
Sbjct: 181 EELEL 185
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 601 RYYIGELLVSFEDLKLLRYLNLADTMIRT-LPESTNSLLNLEILILRNCSRLKKLPSKMR 659
Y G + S L LR L L M+ +P+ + LE LIL ++PS +
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 660 NLINLHHLDIKGANLLREMPLGMKELKNLRTL 691
N NL+ + + L E+P + L+NL L
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 601 RYYIGELLVSFEDLKLLRYLNLADTMIRT-LPESTNSLLNLEILILRNCSRLKKLPSKMR 659
Y G + S L LR L L M+ +P+ + LE LIL ++PS +
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 660 NLINLHHLDIKGANLLREMPLGMKELKNLRTL 691
N NL+ + + L E+P + L+NL L
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 31 QLGGGVDSELKKWEKKLRMIQAMLRDAEE--KQLTDEAVKMWLDDLQDLAYDAEDILDEF 88
+L GV ++ K+L A L E ++ D K+W D++++L+Y ED++D+F
Sbjct: 19 KLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKF 78
Query: 89 ATQA 92
Q
Sbjct: 79 LVQV 82
>pdb|2IVQ|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 160 SSASAAQQRLPSSSVPTERAVYGRDKDKARILKMV----LSTDEKTDDDANFRVIPIVGM 215
++A QQ LP+ + A D+D +L+M+ D D ++ ++ +
Sbjct: 44 TAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYKFYEMLQV 103
Query: 216 AGVGKTTLAREVYNDKSLNAKDFKFDIK 243
G L E + D ++A +FK D+K
Sbjct: 104 YGTTLKALVHEKFGDGIISAINFKLDVK 131
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 588 LPKFKRLRVLSLQRYYIGELL-------VSFEDLKLLRYLNLADTMIRTLPESTNSLLNL 640
+P + RV SL+R +GEL +FE L LRYLNL ++ +P T +L+ L
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLT-ALVRL 180
Query: 641 EILIL 645
E L L
Sbjct: 181 EELEL 185
>pdb|2IV1|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 160 SSASAAQQRLPSSSVPTERAVYGRDKDKARILKMV----LSTDEKTDDDANFRVIPIVGM 215
++A QQ LP+ + A D+D +L+M+ D D ++ ++ +
Sbjct: 44 TAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYQFYEMLQV 103
Query: 216 AGVGKTTLAREVYNDKSLNAKDFKFDIK 243
G L E + D ++A +FK D+K
Sbjct: 104 YGTTLKALVHEKFGDGIISAINFKLDVK 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,424,770
Number of Sequences: 62578
Number of extensions: 1346412
Number of successful extensions: 3172
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 3117
Number of HSP's gapped (non-prelim): 66
length of query: 1112
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1003
effective length of database: 8,152,335
effective search space: 8176792005
effective search space used: 8176792005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)