Query 047598
Match_columns 1112
No_of_seqs 674 out of 4546
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 12:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.2E-85 4.8E-90 784.6 43.6 744 35-829 25-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.8E-64 1.3E-68 638.6 56.0 478 176-695 182-690 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8.8E-43 1.9E-47 381.9 16.2 275 183-469 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 6.9E-35 1.5E-39 374.6 23.0 492 536-1073 70-584 (968)
5 PLN00113 leucine-rich repeat r 100.0 7.6E-33 1.6E-37 355.8 22.7 483 560-1102 69-584 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 1.2E-28 2.7E-33 251.6 -16.3 442 588-1073 87-541 (565)
7 KOG4194 Membrane glycoprotein 99.9 1.9E-25 4.1E-30 238.6 3.7 251 773-1069 193-448 (873)
8 KOG0444 Cytoskeletal regulator 99.9 7.6E-26 1.6E-30 242.7 -4.3 327 588-957 51-380 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 4E-26 8.7E-31 244.8 -10.9 361 592-1074 7-376 (1255)
10 KOG0618 Serine/threonine phosp 99.9 2.9E-25 6.3E-30 250.6 -8.1 435 587-1072 40-488 (1081)
11 KOG4194 Membrane glycoprotein 99.9 4.4E-24 9.4E-29 228.3 0.6 357 594-995 80-446 (873)
12 PLN03210 Resistant to P. syrin 99.9 1.7E-21 3.7E-26 249.6 23.4 353 583-1033 549-909 (1153)
13 KOG0472 Leucine-rich repeat pr 99.9 9.7E-26 2.1E-30 230.5 -13.4 227 553-815 84-310 (565)
14 KOG0618 Serine/threonine phosp 99.8 1.4E-22 3.1E-27 229.1 -5.2 382 559-999 44-463 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 2.7E-14 5.9E-19 169.0 14.4 259 592-953 201-459 (788)
16 KOG4237 Extracellular matrix p 99.5 2.1E-16 4.6E-21 162.7 -6.9 394 595-1047 70-498 (498)
17 PRK15387 E3 ubiquitin-protein 99.5 3.7E-13 8E-18 159.5 15.3 235 777-1073 222-458 (788)
18 KOG0617 Ras suppressor protein 99.5 9.4E-16 2E-20 139.2 -5.0 152 554-715 27-179 (264)
19 PRK15370 E3 ubiquitin-protein 99.4 1.8E-13 4E-18 163.5 9.4 94 593-696 179-272 (754)
20 KOG0617 Ras suppressor protein 99.4 3.1E-15 6.7E-20 135.9 -6.0 116 590-706 31-147 (264)
21 KOG4237 Extracellular matrix p 99.4 3.1E-15 6.8E-20 154.2 -6.9 383 581-998 80-498 (498)
22 PRK15370 E3 ubiquitin-protein 99.4 1.1E-12 2.4E-17 156.9 8.7 96 592-697 199-294 (754)
23 PRK04841 transcriptional regul 99.3 9.3E-11 2E-15 150.8 26.2 273 205-517 30-332 (903)
24 KOG4658 Apoptotic ATPase [Sign 99.3 1E-12 2.2E-17 159.6 5.3 124 590-714 543-670 (889)
25 PRK00411 cdc6 cell division co 99.3 1.2E-09 2.7E-14 125.3 26.7 300 176-496 28-358 (394)
26 TIGR03015 pepcterm_ATPase puta 99.2 1.7E-09 3.7E-14 117.1 22.9 182 207-396 43-242 (269)
27 TIGR02928 orc1/cdc6 family rep 99.1 3.6E-08 7.8E-13 112.0 27.6 303 178-497 15-351 (365)
28 PF01637 Arch_ATPase: Archaeal 99.0 2.9E-09 6.2E-14 113.1 12.2 195 180-391 1-233 (234)
29 PRK00080 ruvB Holliday junctio 99.0 1.1E-08 2.3E-13 113.4 17.1 279 176-498 23-312 (328)
30 COG2909 MalT ATP-dependent tra 99.0 9E-08 1.9E-12 110.4 23.3 289 188-519 25-340 (894)
31 TIGR00635 ruvB Holliday juncti 98.9 3E-08 6.6E-13 109.3 18.7 277 178-498 4-291 (305)
32 cd00116 LRR_RI Leucine-rich re 98.9 4.7E-11 1E-15 133.5 -4.2 87 587-673 18-119 (319)
33 PF05729 NACHT: NACHT domain 98.9 7.6E-09 1.6E-13 103.0 11.9 147 208-359 1-163 (166)
34 cd00116 LRR_RI Leucine-rich re 98.9 3.1E-11 6.7E-16 134.9 -6.0 101 596-697 2-119 (319)
35 PTZ00112 origin recognition co 98.9 3.5E-07 7.6E-12 106.3 24.6 254 178-444 755-1030(1164)
36 KOG0532 Leucine-rich repeat (L 98.8 3.5E-10 7.6E-15 122.9 -3.7 192 593-835 76-270 (722)
37 PRK06893 DNA replication initi 98.7 3.1E-07 6.7E-12 95.6 15.0 152 207-392 39-203 (229)
38 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.5E-13 117.4 4.8 107 589-697 113-220 (394)
39 PF14580 LRR_9: Leucine-rich r 98.7 8.4E-09 1.8E-13 100.2 2.2 78 593-673 20-99 (175)
40 PF14580 LRR_9: Leucine-rich r 98.7 1.5E-08 3.2E-13 98.4 3.8 130 556-697 15-151 (175)
41 KOG4341 F-box protein containi 98.7 4.5E-10 9.7E-15 117.8 -7.2 299 778-1097 139-457 (483)
42 KOG3207 Beta-tubulin folding c 98.7 2.5E-09 5.4E-14 113.0 -1.9 116 937-1072 220-338 (505)
43 COG3899 Predicted ATPase [Gene 98.6 1.4E-06 3.1E-11 107.2 19.6 309 180-514 2-383 (849)
44 COG2256 MGS1 ATPase related to 98.6 7.4E-07 1.6E-11 94.4 14.1 153 205-386 46-206 (436)
45 PRK13342 recombination factor 98.6 8.9E-07 1.9E-11 101.2 16.0 177 178-393 12-197 (413)
46 PRK15386 type III secretion pr 98.5 5.6E-07 1.2E-11 98.1 11.0 161 886-1073 50-213 (426)
47 KOG1259 Nischarin, modulator o 98.5 2E-08 4.3E-13 100.5 -0.8 109 588-700 280-388 (490)
48 PF13401 AAA_22: AAA domain; P 98.5 3.2E-07 7E-12 87.0 7.1 121 206-328 3-125 (131)
49 KOG0532 Leucine-rich repeat (L 98.5 5E-09 1.1E-13 114.2 -6.0 109 590-701 96-204 (722)
50 KOG3207 Beta-tubulin folding c 98.5 1.7E-08 3.7E-13 106.8 -2.1 158 801-999 145-312 (505)
51 PRK04195 replication factor C 98.5 2.7E-05 5.8E-10 91.0 24.1 247 177-469 13-271 (482)
52 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.3E-06 5E-11 89.9 13.3 169 183-393 22-202 (226)
53 PRK05564 DNA polymerase III su 98.4 1.1E-05 2.4E-10 88.8 18.3 180 179-390 5-188 (313)
54 KOG4341 F-box protein containi 98.4 5.4E-09 1.2E-13 109.9 -8.0 249 801-1065 189-457 (483)
55 PLN03150 hypothetical protein; 98.4 4.2E-07 9E-12 109.3 6.4 104 593-696 419-525 (623)
56 COG4886 Leucine-rich repeat (L 98.4 3.1E-07 6.7E-12 105.7 4.9 197 595-841 96-293 (394)
57 PF13855 LRR_8: Leucine rich r 98.3 5.5E-07 1.2E-11 71.6 4.7 56 593-648 2-59 (61)
58 PRK07003 DNA polymerase III su 98.3 4.6E-05 9.9E-10 89.0 21.8 190 177-394 15-223 (830)
59 cd00009 AAA The AAA+ (ATPases 98.3 4.6E-06 1E-10 81.1 12.0 125 181-330 1-131 (151)
60 COG3903 Predicted ATPase [Gene 98.3 1.3E-06 2.9E-11 93.3 8.5 291 205-517 12-314 (414)
61 PRK14961 DNA polymerase III su 98.3 2.6E-05 5.7E-10 87.4 19.2 183 178-388 16-216 (363)
62 PRK12402 replication factor C 98.3 2.1E-05 4.5E-10 88.5 18.3 195 178-390 15-224 (337)
63 PRK08727 hypothetical protein; 98.3 1.9E-05 4E-10 82.5 16.2 148 208-389 42-201 (233)
64 KOG1259 Nischarin, modulator o 98.3 2E-07 4.2E-12 93.6 1.1 57 638-697 284-340 (490)
65 PRK14963 DNA polymerase III su 98.3 3.8E-06 8.3E-11 96.9 11.7 190 178-389 14-214 (504)
66 TIGR02903 spore_lon_C ATP-depe 98.3 1.7E-05 3.6E-10 94.6 17.4 203 178-395 154-398 (615)
67 COG1474 CDC6 Cdc6-related prot 98.3 4E-05 8.8E-10 84.7 19.2 205 180-392 19-238 (366)
68 PF05496 RuvB_N: Holliday junc 98.3 2.4E-05 5.3E-10 77.6 15.2 180 177-394 23-223 (233)
69 PF13173 AAA_14: AAA domain 98.3 3.4E-06 7.4E-11 79.1 9.0 120 207-351 2-127 (128)
70 PRK14960 DNA polymerase III su 98.3 2.8E-05 6E-10 89.8 17.6 180 177-388 14-215 (702)
71 PF13855 LRR_8: Leucine rich r 98.3 1.2E-06 2.5E-11 69.7 4.6 58 615-673 1-60 (61)
72 PRK09087 hypothetical protein; 98.2 5E-05 1.1E-09 78.5 17.6 140 207-391 44-194 (226)
73 PRK14949 DNA polymerase III su 98.2 3.7E-05 8.1E-10 91.6 18.4 186 178-392 16-221 (944)
74 PTZ00202 tuzin; Provisional 98.2 7.3E-05 1.6E-09 81.1 18.9 171 171-358 255-433 (550)
75 PF13191 AAA_16: AAA ATPase do 98.2 2.3E-06 4.9E-11 86.8 6.7 51 179-234 1-51 (185)
76 KOG2028 ATPase related to the 98.2 2E-05 4.3E-10 81.8 13.1 157 205-386 160-330 (554)
77 PLN03025 replication factor C 98.2 3.4E-05 7.4E-10 85.1 16.0 180 178-387 13-195 (319)
78 PRK06645 DNA polymerase III su 98.2 5.8E-05 1.2E-09 86.8 18.0 192 178-387 21-224 (507)
79 PRK00440 rfc replication facto 98.2 6.6E-05 1.4E-09 83.7 18.3 179 178-388 17-199 (319)
80 PRK08084 DNA replication initi 98.2 3.6E-05 7.9E-10 80.5 15.1 151 208-392 46-209 (235)
81 PRK12323 DNA polymerase III su 98.2 6.6E-05 1.4E-09 86.5 17.9 182 177-390 15-223 (700)
82 PRK14957 DNA polymerase III su 98.2 6.6E-05 1.4E-09 86.9 18.0 187 178-393 16-222 (546)
83 PRK15386 type III secretion pr 98.2 6.8E-06 1.5E-10 89.8 9.2 39 801-842 51-89 (426)
84 KOG1909 Ran GTPase-activating 98.1 6.3E-08 1.4E-12 99.9 -6.0 254 588-901 26-310 (382)
85 PRK14962 DNA polymerase III su 98.1 0.00013 2.8E-09 83.8 19.3 204 178-409 14-240 (472)
86 PRK13341 recombination factor 98.1 2E-05 4.4E-10 94.7 13.0 171 178-386 28-211 (725)
87 PRK08903 DnaA regulatory inact 98.1 5.1E-05 1.1E-09 79.5 14.5 152 207-396 42-203 (227)
88 PRK14956 DNA polymerase III su 98.1 4E-05 8.6E-10 86.1 14.2 189 178-387 18-217 (484)
89 TIGR02397 dnaX_nterm DNA polym 98.1 0.00017 3.7E-09 81.6 19.7 186 178-392 14-218 (355)
90 cd01128 rho_factor Transcripti 98.1 6.6E-06 1.4E-10 85.6 7.3 89 207-299 16-113 (249)
91 PRK05896 DNA polymerase III su 98.1 0.00013 2.8E-09 84.5 17.7 196 177-393 15-222 (605)
92 PRK07994 DNA polymerase III su 98.0 0.0001 2.3E-09 86.6 17.1 192 177-389 15-217 (647)
93 PRK05642 DNA replication initi 98.0 9.2E-05 2E-09 77.3 15.0 152 207-392 45-208 (234)
94 PRK08691 DNA polymerase III su 98.0 0.0001 2.2E-09 86.2 16.5 183 177-388 15-216 (709)
95 PRK07471 DNA polymerase III su 98.0 2E-05 4.2E-10 87.4 10.1 199 177-392 18-238 (365)
96 PRK09112 DNA polymerase III su 98.0 0.00025 5.3E-09 78.3 18.4 199 176-392 21-240 (351)
97 PRK14951 DNA polymerase III su 98.0 0.00019 4E-09 84.4 18.1 196 178-389 16-222 (618)
98 PRK09376 rho transcription ter 98.0 1.3E-05 2.7E-10 86.7 7.8 88 207-298 169-265 (416)
99 PLN03150 hypothetical protein; 98.0 7.6E-06 1.7E-10 98.5 6.9 93 586-678 436-531 (623)
100 TIGR00678 holB DNA polymerase 98.0 0.00022 4.9E-09 72.1 16.5 90 288-387 95-186 (188)
101 PRK07940 DNA polymerase III su 98.0 0.00017 3.6E-09 80.8 16.7 188 178-392 5-213 (394)
102 PF00308 Bac_DnaA: Bacterial d 98.0 0.00012 2.7E-09 75.3 14.6 162 206-390 33-206 (219)
103 KOG0531 Protein phosphatase 1, 98.0 1.4E-06 3.1E-11 100.1 0.1 109 588-700 91-200 (414)
104 PRK14964 DNA polymerase III su 98.0 0.00018 3.8E-09 82.1 16.6 182 178-387 13-212 (491)
105 TIGR01242 26Sp45 26S proteasom 98.0 0.00011 2.5E-09 82.7 15.0 182 177-386 121-328 (364)
106 PRK14969 DNA polymerase III su 98.0 0.0002 4.4E-09 83.7 17.1 187 178-392 16-221 (527)
107 PRK14958 DNA polymerase III su 97.9 0.00024 5.2E-09 82.5 17.3 184 178-389 16-217 (509)
108 KOG2227 Pre-initiation complex 97.9 0.00021 4.6E-09 77.5 15.3 212 177-395 149-375 (529)
109 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.3E-10 58.4 3.5 33 616-648 2-34 (44)
110 KOG0531 Protein phosphatase 1, 97.9 1.9E-06 4.2E-11 99.1 -0.9 108 590-701 70-177 (414)
111 PRK14955 DNA polymerase III su 97.9 0.00023 5E-09 80.9 15.9 196 178-388 16-224 (397)
112 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.5E-10 58.2 3.5 41 592-632 1-41 (44)
113 PRK09111 DNA polymerase III su 97.9 0.00035 7.5E-09 82.4 17.6 198 177-390 23-231 (598)
114 PRK14087 dnaA chromosomal repl 97.9 0.00025 5.5E-09 81.3 16.1 168 207-393 141-320 (450)
115 KOG0989 Replication factor C, 97.9 0.00012 2.5E-09 75.1 11.6 183 177-385 35-223 (346)
116 PRK14959 DNA polymerase III su 97.8 0.00054 1.2E-08 79.9 17.9 198 178-396 16-225 (624)
117 PRK14950 DNA polymerase III su 97.8 0.00024 5.3E-09 84.7 15.4 195 178-392 16-221 (585)
118 PRK14970 DNA polymerase III su 97.8 0.00086 1.9E-08 76.0 19.1 182 178-387 17-204 (367)
119 COG0593 DnaA ATPase involved i 97.8 0.0015 3.2E-08 72.0 20.0 244 206-497 112-373 (408)
120 COG2255 RuvB Holliday junction 97.8 0.0013 2.8E-08 66.9 17.7 179 177-393 25-224 (332)
121 PF05621 TniB: Bacterial TniB 97.8 0.0005 1.1E-08 72.0 15.4 196 186-387 45-256 (302)
122 KOG2120 SCF ubiquitin ligase, 97.8 2.3E-07 4.9E-12 93.3 -8.9 112 935-1070 256-373 (419)
123 PRK07133 DNA polymerase III su 97.8 0.0011 2.3E-08 78.8 19.1 195 178-393 18-221 (725)
124 TIGR00767 rho transcription te 97.8 9.8E-05 2.1E-09 80.5 9.8 90 206-299 167-265 (415)
125 KOG4579 Leucine-rich repeat (L 97.8 1.5E-06 3.2E-11 77.3 -3.3 101 594-696 29-133 (177)
126 KOG2120 SCF ubiquitin ligase, 97.8 7.1E-07 1.5E-11 89.8 -6.0 37 801-837 312-350 (419)
127 PRK14953 DNA polymerase III su 97.8 0.0011 2.4E-08 76.6 19.0 184 178-390 16-218 (486)
128 TIGR00362 DnaA chromosomal rep 97.8 0.0008 1.7E-08 77.2 17.9 159 207-388 136-306 (405)
129 PRK14088 dnaA chromosomal repl 97.8 0.00065 1.4E-08 78.0 16.8 155 207-386 130-299 (440)
130 PRK07764 DNA polymerase III su 97.8 0.0008 1.7E-08 82.3 18.4 180 178-387 15-216 (824)
131 PHA02544 44 clamp loader, smal 97.8 0.00032 7E-09 77.8 14.1 149 177-357 20-171 (316)
132 PRK06620 hypothetical protein; 97.8 0.00029 6.3E-09 72.2 12.4 134 208-388 45-185 (214)
133 PRK11331 5-methylcytosine-spec 97.7 0.00021 4.6E-09 79.4 11.8 117 178-311 175-295 (459)
134 PRK14952 DNA polymerase III su 97.7 0.0018 3.8E-08 76.1 19.2 188 178-395 13-223 (584)
135 PRK03992 proteasome-activating 97.7 0.00057 1.2E-08 77.3 14.8 181 177-385 130-336 (389)
136 CHL00181 cbbX CbbX; Provisiona 97.7 0.0017 3.6E-08 69.9 17.6 135 208-361 60-211 (287)
137 PRK14954 DNA polymerase III su 97.7 0.0013 2.9E-08 77.7 18.2 200 178-391 16-228 (620)
138 PRK08451 DNA polymerase III su 97.7 0.0024 5.2E-08 73.8 19.8 180 178-390 14-216 (535)
139 PRK14948 DNA polymerase III su 97.6 0.002 4.4E-08 76.7 19.1 194 178-390 16-220 (620)
140 TIGR02880 cbbX_cfxQ probable R 97.6 0.0014 3.1E-08 70.5 16.2 134 209-361 60-210 (284)
141 TIGR02881 spore_V_K stage V sp 97.6 0.00081 1.7E-08 71.9 14.3 162 179-361 7-193 (261)
142 PRK06305 DNA polymerase III su 97.6 0.0018 3.8E-08 74.5 17.8 186 178-393 17-224 (451)
143 KOG1909 Ran GTPase-activating 97.6 1.9E-05 4.2E-10 82.0 1.6 95 553-652 23-133 (382)
144 KOG2543 Origin recognition com 97.6 0.0031 6.6E-08 67.0 17.5 168 176-358 4-192 (438)
145 TIGR02639 ClpA ATP-dependent C 97.6 0.00058 1.3E-08 84.1 14.4 160 178-359 182-358 (731)
146 PRK14971 DNA polymerase III su 97.6 0.0024 5.3E-08 76.0 18.9 181 178-387 17-217 (614)
147 PRK00149 dnaA chromosomal repl 97.6 0.0019 4.2E-08 75.0 17.9 179 207-410 148-348 (450)
148 PF14516 AAA_35: AAA-like doma 97.6 0.0085 1.8E-07 66.3 21.8 202 176-399 9-246 (331)
149 PRK14086 dnaA chromosomal repl 97.6 0.0034 7.3E-08 73.1 18.9 154 208-386 315-482 (617)
150 PRK12422 chromosomal replicati 97.6 0.0013 2.8E-08 75.2 15.6 153 207-384 141-305 (445)
151 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00027 5.8E-09 87.5 10.1 159 178-359 187-363 (852)
152 PF00004 AAA: ATPase family as 97.5 0.00035 7.7E-09 66.1 7.8 23 210-232 1-23 (132)
153 COG3267 ExeA Type II secretory 97.5 0.0085 1.8E-07 60.5 17.4 180 205-394 49-247 (269)
154 PRK14965 DNA polymerase III su 97.5 0.0055 1.2E-07 72.9 19.2 186 178-393 16-222 (576)
155 PRK06647 DNA polymerase III su 97.4 0.0065 1.4E-07 71.5 19.3 191 178-389 16-217 (563)
156 KOG4579 Leucine-rich repeat (L 97.4 1.7E-05 3.7E-10 70.7 -1.6 91 588-680 49-140 (177)
157 CHL00095 clpC Clp protease ATP 97.4 0.00085 1.8E-08 83.7 12.5 158 178-357 179-352 (821)
158 KOG2982 Uncharacterized conser 97.3 3.7E-05 8.1E-10 77.7 -0.6 101 593-696 46-156 (418)
159 PF05673 DUF815: Protein of un 97.3 0.0077 1.7E-07 61.2 15.7 126 174-331 23-153 (249)
160 KOG1859 Leucine-rich repeat pr 97.3 6.4E-06 1.4E-10 92.9 -6.7 108 587-698 182-291 (1096)
161 PTZ00361 26 proteosome regulat 97.3 0.0016 3.6E-08 73.6 12.2 161 178-361 183-369 (438)
162 TIGR03689 pup_AAA proteasome A 97.3 0.0042 9E-08 71.4 15.6 173 178-360 182-379 (512)
163 PRK11034 clpA ATP-dependent Cl 97.3 0.0022 4.8E-08 77.9 13.7 160 178-359 186-362 (758)
164 TIGR00602 rad24 checkpoint pro 97.3 0.0018 3.9E-08 76.4 12.6 53 176-231 82-134 (637)
165 KOG1859 Leucine-rich repeat pr 97.3 1.1E-05 2.4E-10 91.0 -5.5 105 592-701 164-269 (1096)
166 PRK07399 DNA polymerase III su 97.3 0.013 2.9E-07 63.8 17.9 199 178-392 4-221 (314)
167 PTZ00454 26S protease regulato 97.3 0.0058 1.3E-07 68.8 15.6 160 178-360 145-330 (398)
168 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0028 6.1E-08 79.4 14.1 160 178-359 173-349 (852)
169 PRK05563 DNA polymerase III su 97.2 0.015 3.2E-07 69.0 19.2 191 177-388 15-216 (559)
170 PRK05707 DNA polymerase III su 97.2 0.011 2.4E-07 64.8 16.9 97 288-392 105-203 (328)
171 smart00382 AAA ATPases associa 97.2 0.0019 4.2E-08 62.0 10.0 88 208-302 3-91 (148)
172 COG5238 RNA1 Ran GTPase-activa 97.2 2.6E-05 5.7E-10 77.8 -3.5 85 589-673 27-131 (388)
173 CHL00176 ftsH cell division pr 97.2 0.0055 1.2E-07 73.1 14.7 179 178-384 183-386 (638)
174 PRK08116 hypothetical protein; 97.2 0.0017 3.6E-08 69.2 9.5 103 208-328 115-220 (268)
175 KOG3665 ZYG-1-like serine/thre 97.1 0.00021 4.6E-09 85.7 1.9 110 556-674 144-262 (699)
176 KOG2982 Uncharacterized conser 97.1 0.00012 2.5E-09 74.3 -0.2 136 854-999 70-210 (418)
177 PRK08118 topology modulation p 97.1 0.00028 6E-09 69.3 2.4 35 209-245 3-37 (167)
178 PF13177 DNA_pol3_delta2: DNA 97.1 0.011 2.4E-07 57.7 13.4 141 182-346 1-161 (162)
179 KOG1644 U2-associated snRNP A' 97.1 0.00062 1.4E-08 65.5 4.3 103 592-697 42-151 (233)
180 PRK10787 DNA-binding ATP-depen 97.0 0.022 4.8E-07 70.0 18.5 166 177-359 321-506 (784)
181 PF04665 Pox_A32: Poxvirus A32 97.0 0.0012 2.6E-08 67.6 6.2 35 209-248 15-49 (241)
182 PRK10865 protein disaggregatio 97.0 0.0074 1.6E-07 75.3 14.3 159 178-359 178-354 (857)
183 TIGR01241 FtsH_fam ATP-depende 97.0 0.017 3.7E-07 68.0 16.6 180 177-384 54-258 (495)
184 TIGR02639 ClpA ATP-dependent C 97.0 0.012 2.6E-07 72.7 15.6 122 178-315 454-579 (731)
185 PRK10536 hypothetical protein; 97.0 0.016 3.5E-07 59.7 13.8 137 178-331 55-215 (262)
186 KOG3665 ZYG-1-like serine/thre 96.9 0.00026 5.5E-09 85.0 0.9 113 584-698 140-262 (699)
187 COG0542 clpA ATP-binding subun 96.9 0.0026 5.7E-08 75.5 8.7 126 178-316 491-620 (786)
188 TIGR00763 lon ATP-dependent pr 96.9 0.051 1.1E-06 67.7 20.4 54 177-232 319-372 (775)
189 COG1373 Predicted ATPase (AAA+ 96.9 0.016 3.4E-07 65.7 14.6 119 209-355 39-163 (398)
190 KOG1514 Origin recognition com 96.9 0.029 6.2E-07 64.7 15.9 205 179-395 397-624 (767)
191 PRK08181 transposase; Validate 96.8 0.0034 7.4E-08 66.3 8.0 100 209-329 108-209 (269)
192 PRK08769 DNA polymerase III su 96.8 0.041 8.8E-07 59.8 16.2 96 288-393 112-209 (319)
193 PRK10865 protein disaggregatio 96.8 0.016 3.5E-07 72.4 14.8 140 178-328 568-720 (857)
194 PRK08058 DNA polymerase III su 96.7 0.03 6.5E-07 61.9 15.1 151 180-358 7-181 (329)
195 TIGR02640 gas_vesic_GvpN gas v 96.7 0.049 1.1E-06 58.2 16.1 22 209-230 23-44 (262)
196 PRK07261 topology modulation p 96.7 0.0039 8.4E-08 61.6 6.9 66 209-299 2-67 (171)
197 PRK06871 DNA polymerase III su 96.6 0.11 2.4E-06 56.5 18.1 179 187-389 11-200 (325)
198 KOG2004 Mitochondrial ATP-depe 96.6 0.014 3E-07 67.1 11.4 107 176-299 409-515 (906)
199 PRK06090 DNA polymerase III su 96.6 0.12 2.6E-06 56.1 18.2 93 288-392 107-201 (319)
200 PRK12377 putative replication 96.6 0.0036 7.9E-08 65.2 6.4 101 208-328 102-205 (248)
201 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0085 1.8E-07 74.5 10.6 139 178-328 566-718 (852)
202 TIGR03346 chaperone_ClpB ATP-d 96.6 0.016 3.4E-07 72.8 12.8 139 178-328 565-717 (852)
203 PRK09183 transposase/IS protei 96.6 0.0078 1.7E-07 63.8 8.5 24 208-231 103-126 (259)
204 PRK07952 DNA replication prote 96.5 0.011 2.4E-07 61.4 9.4 103 207-328 99-204 (244)
205 PRK12608 transcription termina 96.5 0.02 4.3E-07 62.6 11.4 102 186-298 119-229 (380)
206 PRK06526 transposase; Provisio 96.5 0.0048 1E-07 64.9 6.6 24 208-231 99-122 (254)
207 KOG0741 AAA+-type ATPase [Post 96.5 0.022 4.7E-07 63.0 11.4 150 204-382 535-704 (744)
208 KOG1644 U2-associated snRNP A' 96.5 0.0029 6.3E-08 61.1 4.2 101 594-697 21-124 (233)
209 PF10443 RNA12: RNA12 protein; 96.5 0.86 1.9E-05 50.6 23.4 273 183-498 1-371 (431)
210 KOG0744 AAA+-type ATPase [Post 96.5 0.017 3.6E-07 60.0 9.7 84 206-300 176-261 (423)
211 COG1222 RPT1 ATP-dependent 26S 96.5 0.15 3.2E-06 54.3 16.7 191 178-397 151-372 (406)
212 PF02562 PhoH: PhoH-like prote 96.5 0.0075 1.6E-07 60.4 7.1 131 183-330 5-157 (205)
213 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0029 6.3E-08 68.6 4.5 53 178-232 51-103 (361)
214 PRK06921 hypothetical protein; 96.4 0.014 3E-07 62.0 9.6 38 207-248 117-154 (266)
215 CHL00095 clpC Clp protease ATP 96.4 0.02 4.3E-07 71.7 12.1 138 178-328 509-661 (821)
216 PRK08939 primosomal protein Dn 96.4 0.016 3.4E-07 62.9 9.8 122 182-328 135-260 (306)
217 COG0470 HolB ATPase involved i 96.3 0.03 6.5E-07 62.5 12.0 145 179-345 2-167 (325)
218 PF01695 IstB_IS21: IstB-like 96.3 0.0038 8.3E-08 61.9 4.0 99 208-328 48-149 (178)
219 PRK06964 DNA polymerase III su 96.3 0.16 3.5E-06 55.7 16.8 93 288-392 131-225 (342)
220 KOG2228 Origin recognition com 96.3 0.035 7.5E-07 58.2 10.8 173 178-359 24-219 (408)
221 PRK04296 thymidine kinase; Pro 96.2 0.012 2.6E-07 59.3 7.2 114 208-331 3-118 (190)
222 TIGR02237 recomb_radB DNA repa 96.2 0.017 3.7E-07 59.6 8.5 48 205-258 10-57 (209)
223 KOG2739 Leucine-rich acidic nu 96.2 0.0027 5.9E-08 64.2 2.4 103 592-697 43-154 (260)
224 PF13207 AAA_17: AAA domain; P 96.2 0.0034 7.4E-08 58.2 3.0 23 209-231 1-23 (121)
225 KOG0733 Nuclear AAA ATPase (VC 96.2 0.15 3.2E-06 58.0 15.6 100 178-300 190-293 (802)
226 PRK06835 DNA replication prote 96.1 0.0066 1.4E-07 66.3 5.3 102 208-328 184-288 (329)
227 PRK05541 adenylylsulfate kinas 96.1 0.015 3.2E-07 58.0 7.4 27 206-232 6-32 (176)
228 PRK04132 replication factor C 96.1 0.15 3.2E-06 62.6 16.9 154 215-390 574-729 (846)
229 PRK09361 radB DNA repair and r 96.1 0.022 4.8E-07 59.5 8.9 46 205-256 21-66 (225)
230 PRK11034 clpA ATP-dependent Cl 96.1 0.028 6.2E-07 68.5 10.9 123 178-314 458-582 (758)
231 PF14532 Sigma54_activ_2: Sigm 96.1 0.007 1.5E-07 57.5 4.6 109 181-329 1-110 (138)
232 TIGR01243 CDC48 AAA family ATP 96.1 0.092 2E-06 65.2 15.6 180 178-385 453-656 (733)
233 TIGR02902 spore_lonB ATP-depen 96.1 0.038 8.2E-07 65.3 11.5 45 178-230 65-109 (531)
234 cd01120 RecA-like_NTPases RecA 96.1 0.028 6.1E-07 55.3 9.1 40 209-253 1-40 (165)
235 CHL00195 ycf46 Ycf46; Provisio 96.0 0.054 1.2E-06 62.6 12.3 161 178-361 228-407 (489)
236 KOG1969 DNA replication checkp 96.0 0.025 5.4E-07 65.4 9.1 76 204-302 323-400 (877)
237 KOG1947 Leucine rich repeat pr 96.0 0.00027 5.8E-09 84.2 -6.9 113 776-901 187-308 (482)
238 PF07693 KAP_NTPase: KAP famil 96.0 0.18 3.9E-06 56.2 16.2 77 184-265 2-80 (325)
239 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.04 8.6E-07 58.1 10.3 60 205-265 17-77 (235)
240 cd01393 recA_like RecA is a b 96.0 0.041 8.9E-07 57.6 10.3 94 205-299 17-124 (226)
241 PRK07993 DNA polymerase III su 96.0 0.27 5.9E-06 54.1 16.9 181 186-390 10-202 (334)
242 PF00158 Sigma54_activat: Sigm 96.0 0.034 7.3E-07 54.5 8.7 46 180-231 1-46 (168)
243 KOG0991 Replication factor C, 96.0 0.15 3.2E-06 50.6 12.7 47 177-231 26-72 (333)
244 TIGR01243 CDC48 AAA family ATP 95.9 0.073 1.6E-06 66.1 13.8 181 178-386 178-381 (733)
245 cd01394 radB RadB. The archaea 95.9 0.032 6.9E-07 58.0 9.1 44 205-253 17-60 (218)
246 PF00560 LRR_1: Leucine Rich R 95.9 0.0037 8E-08 37.4 1.2 19 617-635 2-20 (22)
247 KOG0733 Nuclear AAA ATPase (VC 95.9 0.13 2.9E-06 58.3 13.8 153 208-385 546-717 (802)
248 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.059 1.3E-06 51.5 10.0 101 207-333 26-131 (144)
249 PF07728 AAA_5: AAA domain (dy 95.8 0.0031 6.7E-08 60.2 0.9 87 210-312 2-88 (139)
250 PHA02244 ATPase-like protein 95.8 0.075 1.6E-06 57.9 11.2 23 209-231 121-143 (383)
251 KOG2123 Uncharacterized conser 95.8 0.0005 1.1E-08 69.2 -4.7 59 589-648 38-98 (388)
252 COG2607 Predicted ATPase (AAA+ 95.8 0.32 7E-06 48.8 14.3 122 176-329 58-183 (287)
253 PRK13695 putative NTPase; Prov 95.7 0.012 2.7E-07 58.5 4.7 23 209-231 2-24 (174)
254 PRK08699 DNA polymerase III su 95.7 0.19 4.1E-06 55.1 14.2 71 288-358 112-184 (325)
255 COG1223 Predicted ATPase (AAA+ 95.7 0.31 6.8E-06 49.3 14.1 177 178-385 121-318 (368)
256 cd03247 ABCC_cytochrome_bd The 95.7 0.082 1.8E-06 52.8 10.6 117 208-333 29-161 (178)
257 cd03238 ABC_UvrA The excision 95.7 0.071 1.5E-06 52.6 9.7 117 207-333 21-153 (176)
258 COG1136 SalX ABC-type antimicr 95.7 0.031 6.6E-07 56.7 7.2 59 278-336 149-210 (226)
259 COG5238 RNA1 Ran GTPase-activa 95.6 0.0042 9.2E-08 62.5 0.9 36 801-836 213-253 (388)
260 KOG2739 Leucine-rich acidic nu 95.6 0.0065 1.4E-07 61.5 2.2 13 937-949 63-75 (260)
261 PF08423 Rad51: Rad51; InterP 95.6 0.038 8.2E-07 58.5 8.1 60 206-266 37-97 (256)
262 PRK06696 uridine kinase; Valid 95.6 0.015 3.3E-07 60.4 5.1 44 183-231 3-46 (223)
263 cd03222 ABC_RNaseL_inhibitor T 95.6 0.071 1.5E-06 52.7 9.4 109 207-334 25-137 (177)
264 TIGR03499 FlhF flagellar biosy 95.6 0.081 1.8E-06 57.0 10.6 88 206-298 193-281 (282)
265 cd00983 recA RecA is a bacter 95.5 0.032 6.8E-07 60.4 7.2 85 205-299 53-143 (325)
266 TIGR02238 recomb_DMC1 meiotic 95.5 0.054 1.2E-06 59.0 9.1 62 205-267 94-156 (313)
267 cd03228 ABCC_MRP_Like The MRP 95.5 0.12 2.5E-06 51.3 10.8 26 207-232 28-53 (171)
268 COG1121 ZnuC ABC-type Mn/Zn tr 95.5 0.099 2.1E-06 54.0 10.3 125 208-334 31-204 (254)
269 cd03223 ABCD_peroxisomal_ALDP 95.5 0.12 2.6E-06 50.9 10.7 120 207-333 27-152 (166)
270 PRK07667 uridine kinase; Provi 95.5 0.018 3.9E-07 58.2 5.0 39 187-231 3-41 (193)
271 COG2812 DnaX DNA polymerase II 95.5 0.054 1.2E-06 62.0 9.2 188 178-386 16-214 (515)
272 TIGR01817 nifA Nif-specific re 95.5 0.3 6.6E-06 58.3 16.1 50 176-231 194-243 (534)
273 COG2884 FtsE Predicted ATPase 95.4 0.16 3.6E-06 49.0 10.7 59 277-336 143-204 (223)
274 PRK09354 recA recombinase A; P 95.4 0.065 1.4E-06 58.5 9.1 86 204-299 57-148 (349)
275 KOG1051 Chaperone HSP104 and r 95.4 0.11 2.4E-06 63.1 11.8 123 178-314 562-685 (898)
276 PRK05800 cobU adenosylcobinami 95.4 0.033 7.2E-07 54.6 6.2 80 209-298 3-85 (170)
277 PRK12724 flagellar biosynthesi 95.3 0.077 1.7E-06 59.1 9.5 26 206-231 222-247 (432)
278 PRK14722 flhF flagellar biosyn 95.3 0.049 1.1E-06 60.2 8.0 88 207-299 137-225 (374)
279 KOG1947 Leucine rich repeat pr 95.3 0.0013 2.7E-08 78.4 -4.8 226 801-1076 187-443 (482)
280 KOG0730 AAA+-type ATPase [Post 95.3 0.24 5.2E-06 57.1 13.2 163 178-363 434-619 (693)
281 cd01133 F1-ATPase_beta F1 ATP 95.3 0.12 2.6E-06 54.4 10.2 88 207-298 69-172 (274)
282 TIGR02012 tigrfam_recA protein 95.2 0.052 1.1E-06 58.7 7.7 85 205-299 53-143 (321)
283 cd03214 ABC_Iron-Siderophores_ 95.2 0.21 4.5E-06 50.0 11.6 119 207-332 25-161 (180)
284 PRK15455 PrkA family serine pr 95.2 0.02 4.3E-07 65.5 4.6 51 179-231 77-127 (644)
285 KOG0739 AAA+-type ATPase [Post 95.2 2.7 6E-05 43.6 19.1 177 179-384 134-333 (439)
286 PRK11889 flhF flagellar biosyn 95.2 0.16 3.5E-06 55.8 11.2 88 206-299 240-330 (436)
287 PF00448 SRP54: SRP54-type pro 95.2 0.049 1.1E-06 54.9 7.0 56 208-268 2-58 (196)
288 COG0464 SpoVK ATPases of the A 95.2 0.21 4.6E-06 59.1 13.6 134 205-361 274-425 (494)
289 COG1484 DnaC DNA replication p 95.2 0.05 1.1E-06 57.4 7.2 81 207-307 105-185 (254)
290 COG1618 Predicted nucleotide k 95.2 0.018 4E-07 53.6 3.4 26 208-233 6-31 (179)
291 PRK04301 radA DNA repair and r 95.2 0.13 2.8E-06 56.7 10.9 61 205-266 100-161 (317)
292 PF13604 AAA_30: AAA domain; P 95.2 0.017 3.7E-07 58.5 3.6 109 207-330 18-132 (196)
293 PRK00771 signal recognition pa 95.2 0.2 4.4E-06 57.0 12.4 88 205-298 93-184 (437)
294 COG1102 Cmk Cytidylate kinase 95.1 0.039 8.5E-07 51.5 5.3 44 209-268 2-45 (179)
295 cd02025 PanK Pantothenate kina 95.1 0.077 1.7E-06 54.8 8.2 23 209-231 1-23 (220)
296 PRK06067 flagellar accessory p 95.1 0.13 2.9E-06 54.0 10.2 87 205-299 23-130 (234)
297 COG0572 Udk Uridine kinase [Nu 95.1 0.049 1.1E-06 54.5 6.4 78 205-290 6-85 (218)
298 PLN03187 meiotic recombination 95.1 0.11 2.4E-06 57.0 9.7 62 205-267 124-186 (344)
299 TIGR02239 recomb_RAD51 DNA rep 95.1 0.11 2.5E-06 56.6 9.8 61 205-266 94-155 (316)
300 COG2842 Uncharacterized ATPase 95.0 0.52 1.1E-05 49.3 13.8 97 208-315 95-191 (297)
301 COG0466 Lon ATP-dependent Lon 95.0 0.033 7.1E-07 64.6 5.6 166 177-359 322-508 (782)
302 TIGR01650 PD_CobS cobaltochela 95.0 0.57 1.2E-05 50.6 14.6 45 178-232 45-89 (327)
303 cd00561 CobA_CobO_BtuR ATP:cor 95.0 0.09 2E-06 50.4 7.7 117 208-330 3-139 (159)
304 KOG0735 AAA+-type ATPase [Post 95.0 0.11 2.3E-06 60.1 9.3 73 206-299 430-504 (952)
305 PRK10733 hflB ATP-dependent me 95.0 0.23 5E-06 60.3 13.0 161 178-361 152-337 (644)
306 KOG0734 AAA+-type ATPase conta 95.0 0.19 4.1E-06 56.1 10.8 57 178-234 304-364 (752)
307 PRK11608 pspF phage shock prot 94.9 0.093 2E-06 58.0 8.9 46 179-230 7-52 (326)
308 PRK12723 flagellar biosynthesi 94.9 0.27 5.8E-06 55.0 12.4 91 206-300 173-265 (388)
309 cd00544 CobU Adenosylcobinamid 94.9 0.09 1.9E-06 51.5 7.7 79 210-298 2-82 (169)
310 TIGR02858 spore_III_AA stage I 94.9 0.14 2.9E-06 54.4 9.5 128 186-333 97-233 (270)
311 PRK15429 formate hydrogenlyase 94.8 0.14 3E-06 63.2 11.0 135 178-329 376-521 (686)
312 COG0542 clpA ATP-binding subun 94.8 0.072 1.6E-06 63.7 8.0 159 178-358 170-345 (786)
313 COG1875 NYN ribonuclease and A 94.8 0.081 1.8E-06 56.3 7.4 37 182-226 228-264 (436)
314 cd01131 PilT Pilus retraction 94.8 0.047 1E-06 55.5 5.7 110 208-332 2-112 (198)
315 COG0563 Adk Adenylate kinase a 94.8 0.046 9.9E-07 54.0 5.3 24 209-232 2-25 (178)
316 PF00485 PRK: Phosphoribulokin 94.8 0.021 4.5E-07 58.0 3.0 81 209-294 1-88 (194)
317 COG0468 RecA RecA/RadA recombi 94.8 0.12 2.7E-06 54.5 8.7 91 203-299 56-151 (279)
318 cd02019 NK Nucleoside/nucleoti 94.8 0.022 4.9E-07 46.2 2.6 23 209-231 1-23 (69)
319 PLN00020 ribulose bisphosphate 94.7 0.065 1.4E-06 57.9 6.6 29 205-233 146-174 (413)
320 PF00560 LRR_1: Leucine Rich R 94.7 0.02 4.3E-07 34.2 1.6 22 593-614 1-22 (22)
321 PRK14974 cell division protein 94.7 0.23 5.1E-06 54.4 11.0 89 206-300 139-233 (336)
322 cd01122 GP4d_helicase GP4d_hel 94.7 0.31 6.7E-06 52.6 12.1 53 207-265 30-82 (271)
323 COG4608 AppF ABC-type oligopep 94.7 0.078 1.7E-06 54.7 6.8 124 207-336 39-177 (268)
324 PF13238 AAA_18: AAA domain; P 94.6 0.022 4.9E-07 53.3 2.7 21 210-230 1-21 (129)
325 PTZ00088 adenylate kinase 1; P 94.6 0.03 6.5E-07 57.9 3.7 22 210-231 9-30 (229)
326 KOG0473 Leucine-rich repeat pr 94.6 0.00096 2.1E-08 65.4 -6.6 87 588-675 38-124 (326)
327 KOG2123 Uncharacterized conser 94.6 0.0028 6E-08 64.0 -3.6 105 590-697 17-128 (388)
328 PLN03186 DNA repair protein RA 94.6 0.2 4.3E-06 55.1 10.2 62 205-267 121-183 (342)
329 cd03246 ABCC_Protease_Secretio 94.6 0.17 3.6E-06 50.3 9.0 24 208-231 29-52 (173)
330 PRK12727 flagellar biosynthesi 94.6 0.085 1.8E-06 60.3 7.5 88 206-299 349-438 (559)
331 PTZ00301 uridine kinase; Provi 94.6 0.026 5.6E-07 57.5 3.2 25 207-231 3-27 (210)
332 PRK06547 hypothetical protein; 94.6 0.047 1E-06 53.7 4.9 27 205-231 13-39 (172)
333 COG1428 Deoxynucleoside kinase 94.6 0.053 1.2E-06 53.5 5.1 26 207-232 4-29 (216)
334 COG4181 Predicted ABC-type tra 94.6 0.3 6.5E-06 46.2 9.6 85 251-336 120-214 (228)
335 PRK05439 pantothenate kinase; 94.6 0.18 3.9E-06 54.4 9.6 82 205-290 84-166 (311)
336 TIGR02236 recomb_radA DNA repa 94.6 0.24 5.2E-06 54.6 11.0 61 205-266 93-154 (310)
337 KOG0731 AAA+-type ATPase conta 94.5 0.85 1.8E-05 54.5 15.6 182 178-387 311-519 (774)
338 TIGR00064 ftsY signal recognit 94.5 0.12 2.6E-06 55.1 8.2 89 205-299 70-164 (272)
339 PRK08233 hypothetical protein; 94.5 0.031 6.6E-07 56.2 3.5 25 207-231 3-27 (182)
340 TIGR00235 udk uridine kinase. 94.5 0.034 7.3E-07 57.2 3.8 27 205-231 4-30 (207)
341 PRK05480 uridine/cytidine kina 94.5 0.033 7.2E-07 57.4 3.7 26 206-231 5-30 (209)
342 TIGR02974 phageshock_pspF psp 94.5 0.12 2.6E-06 57.0 8.2 46 180-231 1-46 (329)
343 cd03115 SRP The signal recogni 94.5 0.25 5.3E-06 49.1 9.8 23 209-231 2-24 (173)
344 PRK05703 flhF flagellar biosyn 94.4 0.21 4.5E-06 57.0 10.2 85 208-298 222-308 (424)
345 cd02027 APSK Adenosine 5'-phos 94.3 0.22 4.9E-06 47.8 8.8 23 209-231 1-23 (149)
346 PF07724 AAA_2: AAA domain (Cd 94.3 0.039 8.5E-07 54.2 3.6 26 207-232 3-28 (171)
347 TIGR00150 HI0065_YjeE ATPase, 94.3 0.061 1.3E-06 49.8 4.6 26 207-232 22-47 (133)
348 PRK09270 nucleoside triphospha 94.3 0.24 5.2E-06 51.7 9.7 28 205-232 31-58 (229)
349 TIGR00959 ffh signal recogniti 94.3 0.16 3.4E-06 57.7 8.7 26 206-231 98-123 (428)
350 PF13671 AAA_33: AAA domain; P 94.2 0.035 7.5E-07 53.2 3.1 23 209-231 1-23 (143)
351 cd03216 ABC_Carb_Monos_I This 94.2 0.16 3.5E-06 49.7 7.8 117 207-333 26-146 (163)
352 PF06309 Torsin: Torsin; Inte 94.2 0.069 1.5E-06 48.3 4.6 52 178-230 25-76 (127)
353 TIGR00554 panK_bact pantothena 94.2 0.2 4.4E-06 53.5 9.0 25 205-229 60-84 (290)
354 cd01125 repA Hexameric Replica 94.2 0.35 7.7E-06 50.9 10.9 145 209-353 3-198 (239)
355 PF12775 AAA_7: P-loop contain 94.2 0.039 8.4E-07 58.9 3.5 95 187-305 22-116 (272)
356 PRK10867 signal recognition pa 94.2 0.15 3.2E-06 57.9 8.2 26 206-231 99-124 (433)
357 cd03230 ABC_DR_subfamily_A Thi 94.1 0.33 7.2E-06 48.1 10.0 25 207-231 26-50 (173)
358 PRK13948 shikimate kinase; Pro 94.1 0.32 6.9E-06 48.3 9.6 27 206-232 9-35 (182)
359 TIGR03877 thermo_KaiC_1 KaiC d 94.1 0.27 5.9E-06 51.6 9.7 49 205-260 19-67 (237)
360 PRK06762 hypothetical protein; 94.1 0.04 8.7E-07 54.3 3.3 24 208-231 3-26 (166)
361 PTZ00035 Rad51 protein; Provis 94.1 0.47 1E-05 52.4 11.9 61 205-266 116-177 (337)
362 TIGR01069 mutS2 MutS2 family p 94.1 0.047 1E-06 67.0 4.5 112 288-409 401-518 (771)
363 PRK12726 flagellar biosynthesi 94.1 0.49 1.1E-05 51.9 11.5 91 205-300 204-296 (407)
364 PRK05022 anaerobic nitric oxid 94.0 0.24 5.1E-06 58.6 10.1 136 177-329 186-332 (509)
365 TIGR00390 hslU ATP-dependent p 94.0 0.12 2.6E-06 57.3 6.9 87 177-265 11-104 (441)
366 PRK03839 putative kinase; Prov 94.0 0.039 8.3E-07 55.3 2.9 24 209-232 2-25 (180)
367 KOG0736 Peroxisome assembly fa 94.0 1.6 3.4E-05 51.6 15.7 201 178-410 672-898 (953)
368 cd02021 GntK Gluconate kinase 94.0 0.32 7E-06 46.9 9.3 23 209-231 1-23 (150)
369 PRK13539 cytochrome c biogenes 93.9 0.3 6.4E-06 50.2 9.4 25 207-231 28-52 (207)
370 KOG1532 GTPase XAB1, interacts 93.9 0.23 4.9E-06 50.6 7.9 30 205-234 17-46 (366)
371 PRK06217 hypothetical protein; 93.9 0.089 1.9E-06 52.8 5.4 24 209-232 3-26 (183)
372 PRK13531 regulatory ATPase Rav 93.9 0.061 1.3E-06 60.9 4.5 44 178-231 20-63 (498)
373 cd03283 ABC_MutS-like MutS-lik 93.9 0.35 7.5E-06 49.1 9.6 23 208-230 26-48 (199)
374 COG0396 sufC Cysteine desulfur 93.8 0.72 1.6E-05 46.3 11.1 61 281-341 154-216 (251)
375 PF03308 ArgK: ArgK protein; 93.7 0.092 2E-06 53.9 5.0 63 186-257 14-76 (266)
376 PRK00625 shikimate kinase; Pro 93.7 0.044 9.6E-07 53.9 2.7 24 209-232 2-25 (173)
377 PF00006 ATP-synt_ab: ATP synt 93.7 0.2 4.4E-06 51.0 7.5 82 208-298 16-114 (215)
378 cd03281 ABC_MSH5_euk MutS5 hom 93.7 0.5 1.1E-05 48.5 10.5 121 207-335 29-160 (213)
379 cd03215 ABC_Carb_Monos_II This 93.7 0.45 9.9E-06 47.6 10.1 26 207-232 26-51 (182)
380 PRK07132 DNA polymerase III su 93.7 4 8.7E-05 44.1 17.6 159 207-392 18-185 (299)
381 KOG2035 Replication factor C, 93.6 0.49 1.1E-05 48.5 9.7 208 180-411 15-258 (351)
382 TIGR01360 aden_kin_iso1 adenyl 93.6 0.051 1.1E-06 54.9 3.1 25 207-231 3-27 (188)
383 PHA00729 NTP-binding motif con 93.6 0.1 2.2E-06 53.0 5.1 26 206-231 16-41 (226)
384 PRK04040 adenylate kinase; Pro 93.6 0.055 1.2E-06 54.2 3.2 24 208-231 3-26 (188)
385 TIGR03771 anch_rpt_ABC anchore 93.6 0.49 1.1E-05 49.2 10.4 25 207-231 6-30 (223)
386 PRK14723 flhF flagellar biosyn 93.6 0.48 1E-05 57.2 11.4 87 207-299 185-273 (767)
387 COG1703 ArgK Putative periplas 93.6 0.1 2.2E-06 54.3 5.0 64 188-260 38-101 (323)
388 PRK06995 flhF flagellar biosyn 93.5 0.45 9.9E-06 54.6 10.7 88 207-299 256-344 (484)
389 cd03217 ABC_FeS_Assembly ABC-t 93.5 0.36 7.9E-06 49.2 9.2 24 207-230 26-49 (200)
390 KOG0729 26S proteasome regulat 93.5 0.48 1E-05 47.9 9.4 55 178-232 177-236 (435)
391 cd03369 ABCC_NFT1 Domain 2 of 93.5 1 2.2E-05 46.2 12.5 24 207-230 34-57 (207)
392 PTZ00494 tuzin-like protein; P 93.5 3.3 7.2E-05 45.9 16.2 170 172-358 365-543 (664)
393 cd03250 ABCC_MRP_domain1 Domai 93.5 0.98 2.1E-05 46.2 12.3 26 207-232 31-56 (204)
394 PF00910 RNA_helicase: RNA hel 93.4 0.047 1E-06 49.1 2.1 23 210-232 1-23 (107)
395 TIGR03878 thermo_KaiC_2 KaiC d 93.4 0.21 4.6E-06 53.1 7.5 43 205-252 34-76 (259)
396 cd03282 ABC_MSH4_euk MutS4 hom 93.4 0.12 2.6E-06 52.5 5.3 120 207-336 29-158 (204)
397 PF01583 APS_kinase: Adenylyls 93.4 0.074 1.6E-06 50.7 3.5 25 208-232 3-27 (156)
398 PRK13543 cytochrome c biogenes 93.4 0.73 1.6E-05 47.6 11.3 25 207-231 37-61 (214)
399 PRK10751 molybdopterin-guanine 93.4 0.078 1.7E-06 51.7 3.7 28 205-232 4-31 (173)
400 cd02024 NRK1 Nicotinamide ribo 93.4 0.052 1.1E-06 53.9 2.5 23 209-231 1-23 (187)
401 PRK14721 flhF flagellar biosyn 93.3 0.37 8.1E-06 54.3 9.5 87 207-298 191-278 (420)
402 PRK06002 fliI flagellum-specif 93.3 0.41 9E-06 54.1 9.8 86 207-298 165-263 (450)
403 PRK05201 hslU ATP-dependent pr 93.3 0.19 4.1E-06 55.8 7.0 87 177-265 14-107 (443)
404 cd03237 ABC_RNaseL_inhibitor_d 93.3 0.66 1.4E-05 48.9 10.9 26 207-232 25-50 (246)
405 cd01121 Sms Sms (bacterial rad 93.3 0.49 1.1E-05 52.9 10.3 41 206-251 81-121 (372)
406 PF08298 AAA_PrkA: PrkA AAA do 93.3 0.1 2.2E-06 56.3 4.7 53 177-231 60-112 (358)
407 TIGR01359 UMP_CMP_kin_fam UMP- 93.2 0.054 1.2E-06 54.4 2.4 23 209-231 1-23 (183)
408 PF13306 LRR_5: Leucine rich r 93.2 0.28 6E-06 45.8 7.1 82 584-670 27-111 (129)
409 PRK08972 fliI flagellum-specif 93.2 0.32 7E-06 54.7 8.6 85 207-298 162-261 (444)
410 TIGR02322 phosphon_PhnN phosph 93.2 0.069 1.5E-06 53.4 3.1 24 208-231 2-25 (179)
411 TIGR03575 selen_PSTK_euk L-ser 93.1 0.8 1.7E-05 50.2 11.4 23 210-232 2-24 (340)
412 cd02023 UMPK Uridine monophosp 93.1 0.058 1.3E-06 55.0 2.6 22 209-230 1-22 (198)
413 KOG3347 Predicted nucleotide k 93.1 0.14 3E-06 47.1 4.5 25 208-232 8-32 (176)
414 PF00154 RecA: recA bacterial 93.1 0.12 2.6E-06 55.8 5.0 85 205-299 51-141 (322)
415 PRK00889 adenylylsulfate kinas 93.1 0.086 1.9E-06 52.5 3.7 25 207-231 4-28 (175)
416 PF13306 LRR_5: Leucine rich r 93.1 0.22 4.7E-06 46.6 6.2 102 584-692 4-109 (129)
417 PRK10463 hydrogenase nickel in 93.0 0.23 5E-06 52.7 6.7 28 205-232 102-129 (290)
418 cd00267 ABC_ATPase ABC (ATP-bi 92.9 0.31 6.7E-06 47.5 7.3 118 208-334 26-145 (157)
419 cd00227 CPT Chloramphenicol (C 92.9 0.073 1.6E-06 53.0 2.8 24 208-231 3-26 (175)
420 PRK09544 znuC high-affinity zi 92.8 0.61 1.3E-05 49.4 9.9 25 207-231 30-54 (251)
421 COG1224 TIP49 DNA helicase TIP 92.8 0.39 8.5E-06 51.1 8.0 51 176-232 37-90 (450)
422 COG3640 CooC CO dehydrogenase 92.8 0.15 3.2E-06 51.1 4.7 43 209-255 2-44 (255)
423 COG2019 AdkA Archaeal adenylat 92.8 0.092 2E-06 49.3 3.1 25 207-231 4-28 (189)
424 PRK08533 flagellar accessory p 92.8 0.56 1.2E-05 48.9 9.3 49 206-261 23-71 (230)
425 PF07726 AAA_3: ATPase family 92.8 0.062 1.4E-06 48.7 1.9 23 210-232 2-24 (131)
426 cd02028 UMPK_like Uridine mono 92.8 0.074 1.6E-06 53.0 2.6 23 209-231 1-23 (179)
427 PF13481 AAA_25: AAA domain; P 92.8 0.45 9.7E-06 48.2 8.5 43 208-252 33-82 (193)
428 KOG0473 Leucine-rich repeat pr 92.7 0.0049 1.1E-07 60.6 -5.5 90 605-696 31-121 (326)
429 PF00625 Guanylate_kin: Guanyl 92.7 0.11 2.5E-06 52.0 3.9 38 207-249 2-39 (183)
430 PRK04328 hypothetical protein; 92.7 0.38 8.2E-06 50.9 8.0 43 205-252 21-63 (249)
431 PRK00131 aroK shikimate kinase 92.7 0.086 1.9E-06 52.5 3.0 24 208-231 5-28 (175)
432 KOG0743 AAA+-type ATPase [Post 92.7 2.2 4.7E-05 47.5 13.7 23 209-231 237-259 (457)
433 cd01135 V_A-ATPase_B V/A-type 92.7 0.48 1E-05 49.8 8.5 90 208-298 70-175 (276)
434 PF13504 LRR_7: Leucine rich r 92.7 0.069 1.5E-06 29.5 1.3 12 617-628 3-14 (17)
435 PRK15453 phosphoribulokinase; 92.6 0.54 1.2E-05 49.4 8.7 26 206-231 4-29 (290)
436 cd03232 ABC_PDR_domain2 The pl 92.6 0.73 1.6E-05 46.6 9.8 24 207-230 33-56 (192)
437 TIGR03263 guanyl_kin guanylate 92.6 0.092 2E-06 52.6 3.1 24 208-231 2-25 (180)
438 PRK05917 DNA polymerase III su 92.6 3 6.5E-05 44.6 14.4 59 288-346 94-154 (290)
439 PRK06731 flhF flagellar biosyn 92.6 0.75 1.6E-05 48.8 9.9 89 207-300 75-165 (270)
440 PRK00409 recombination and DNA 92.5 0.087 1.9E-06 65.0 3.2 177 206-409 326-523 (782)
441 smart00534 MUTSac ATPase domai 92.4 1 2.2E-05 45.2 10.4 118 209-335 1-128 (185)
442 TIGR01425 SRP54_euk signal rec 92.4 0.44 9.4E-06 53.8 8.4 26 206-231 99-124 (429)
443 KOG0728 26S proteasome regulat 92.4 3.9 8.4E-05 41.3 13.8 155 182-359 151-331 (404)
444 KOG0924 mRNA splicing factor A 92.4 1 2.2E-05 51.9 11.0 116 207-330 371-511 (1042)
445 cd03245 ABCC_bacteriocin_expor 92.4 1.1 2.4E-05 46.5 11.0 25 207-231 30-54 (220)
446 PRK00279 adk adenylate kinase; 92.4 0.28 6E-06 50.7 6.4 23 209-231 2-24 (215)
447 cd01134 V_A-ATPase_A V/A-type 92.4 1.1 2.3E-05 48.7 10.7 47 208-261 158-205 (369)
448 PRK13949 shikimate kinase; Pro 92.4 0.097 2.1E-06 51.5 2.9 24 209-232 3-26 (169)
449 cd02029 PRK_like Phosphoribulo 92.3 0.4 8.6E-06 50.0 7.3 77 209-290 1-85 (277)
450 cd02020 CMPK Cytidine monophos 92.3 0.089 1.9E-06 50.6 2.6 23 209-231 1-23 (147)
451 COG1936 Predicted nucleotide k 92.3 0.11 2.3E-06 49.5 2.8 20 209-228 2-21 (180)
452 PRK07594 type III secretion sy 92.3 0.72 1.6E-05 52.1 9.8 85 207-298 155-254 (433)
453 PRK03846 adenylylsulfate kinas 92.3 0.13 2.8E-06 52.4 3.7 27 205-231 22-48 (198)
454 PRK10820 DNA-binding transcrip 92.3 0.44 9.5E-06 56.4 8.6 47 178-230 204-250 (520)
455 PRK09519 recA DNA recombinatio 92.2 0.51 1.1E-05 57.2 9.1 85 205-299 58-148 (790)
456 PRK05973 replicative DNA helic 92.2 0.71 1.5E-05 47.8 9.0 41 206-251 63-103 (237)
457 PF03205 MobB: Molybdopterin g 92.2 0.11 2.4E-06 49.1 3.0 39 208-250 1-39 (140)
458 cd00820 PEPCK_HprK Phosphoenol 92.2 0.13 2.8E-06 45.4 3.1 22 207-228 15-36 (107)
459 COG4240 Predicted kinase [Gene 92.2 0.39 8.4E-06 47.6 6.5 82 205-290 48-134 (300)
460 PRK13947 shikimate kinase; Pro 92.2 0.1 2.2E-06 51.8 2.8 24 209-232 3-26 (171)
461 PLN02318 phosphoribulokinase/u 92.2 0.18 3.9E-06 58.3 5.0 27 204-230 62-88 (656)
462 cd00071 GMPK Guanosine monopho 92.2 0.1 2.3E-06 49.2 2.7 23 209-231 1-23 (137)
463 PRK08927 fliI flagellum-specif 92.1 0.79 1.7E-05 51.8 9.9 85 207-298 158-257 (442)
464 TIGR03881 KaiC_arch_4 KaiC dom 92.1 0.75 1.6E-05 48.1 9.4 42 205-251 18-59 (229)
465 PRK09280 F0F1 ATP synthase sub 92.1 0.73 1.6E-05 52.4 9.6 88 207-298 144-247 (463)
466 TIGR01351 adk adenylate kinase 92.0 0.36 7.9E-06 49.6 6.8 22 210-231 2-23 (210)
467 COG2401 ABC-type ATPase fused 92.0 0.27 5.8E-06 53.3 5.7 61 279-340 515-579 (593)
468 PRK14738 gmk guanylate kinase; 92.0 0.14 3E-06 52.4 3.7 27 204-230 10-36 (206)
469 cd03254 ABCC_Glucan_exporter_l 92.0 1.4 3.1E-05 46.0 11.5 24 208-231 30-53 (229)
470 COG1124 DppF ABC-type dipeptid 92.0 0.13 2.7E-06 52.1 3.1 24 207-230 33-56 (252)
471 PRK14737 gmk guanylate kinase; 92.0 0.16 3.4E-06 50.9 3.9 26 206-231 3-28 (186)
472 PRK10078 ribose 1,5-bisphospho 92.0 0.12 2.7E-06 51.9 3.1 24 208-231 3-26 (186)
473 cd03244 ABCC_MRP_domain2 Domai 91.9 1.4 3.1E-05 45.7 11.2 25 207-231 30-54 (221)
474 PRK00300 gmk guanylate kinase; 91.9 0.12 2.7E-06 52.9 3.2 25 207-231 5-29 (205)
475 cd03253 ABCC_ATM1_transporter 91.9 1.3 2.9E-05 46.4 11.1 25 207-231 27-51 (236)
476 TIGR00708 cobA cob(I)alamin ad 91.9 0.83 1.8E-05 44.5 8.5 117 208-329 6-140 (173)
477 cd03213 ABCG_EPDR ABCG transpo 91.9 1.1 2.4E-05 45.4 10.0 25 207-231 35-59 (194)
478 PF03969 AFG1_ATPase: AFG1-lik 91.9 0.44 9.6E-06 53.0 7.5 78 206-301 61-139 (362)
479 KOG2170 ATPase of the AAA+ sup 91.9 0.26 5.6E-06 51.2 5.2 55 177-232 81-135 (344)
480 PRK10416 signal recognition pa 91.8 0.89 1.9E-05 49.7 9.7 27 206-232 113-139 (318)
481 PRK12339 2-phosphoglycerate ki 91.7 0.15 3.2E-06 51.4 3.4 25 207-231 3-27 (197)
482 PRK14530 adenylate kinase; Pro 91.7 0.12 2.5E-06 53.6 2.7 23 209-231 5-27 (215)
483 PRK08149 ATP synthase SpaL; Va 91.7 0.98 2.1E-05 51.0 10.0 85 207-298 151-250 (428)
484 COG0003 ArsA Predicted ATPase 91.7 0.23 5E-06 53.8 5.0 49 207-260 2-50 (322)
485 PF08477 Miro: Miro-like prote 91.7 0.15 3.2E-06 46.9 3.1 23 210-232 2-24 (119)
486 PF03215 Rad17: Rad17 cell cyc 91.7 0.21 4.4E-06 58.3 4.9 60 178-247 19-78 (519)
487 TIGR02868 CydC thiol reductant 91.6 1.3 2.8E-05 53.2 11.8 27 206-232 360-386 (529)
488 COG0467 RAD55 RecA-superfamily 91.6 0.17 3.7E-06 54.1 3.9 43 205-252 21-63 (260)
489 PRK13975 thymidylate kinase; P 91.6 0.15 3.2E-06 52.0 3.2 25 208-232 3-27 (196)
490 TIGR03522 GldA_ABC_ATP gliding 91.6 1.7 3.6E-05 47.6 11.7 25 207-231 28-52 (301)
491 PLN02348 phosphoribulokinase 91.6 0.33 7.2E-06 53.6 6.1 27 205-231 47-73 (395)
492 cd00464 SK Shikimate kinase (S 91.6 0.13 2.9E-06 49.8 2.8 22 210-231 2-23 (154)
493 TIGR03498 FliI_clade3 flagella 91.5 1 2.2E-05 50.9 10.1 85 207-298 140-239 (418)
494 KOG0651 26S proteasome regulat 91.5 1 2.3E-05 47.0 9.0 30 205-234 164-193 (388)
495 COG5635 Predicted NTPase (NACH 91.4 0.27 5.9E-06 61.8 6.0 139 207-350 222-369 (824)
496 PTZ00185 ATPase alpha subunit; 91.4 1.1 2.4E-05 51.0 9.9 93 207-299 189-299 (574)
497 PRK05537 bifunctional sulfate 91.4 0.25 5.3E-06 58.7 5.3 49 178-232 369-417 (568)
498 cd01132 F1_ATPase_alpha F1 ATP 91.4 1.3 2.8E-05 46.7 9.8 85 207-298 69-170 (274)
499 CHL00206 ycf2 Ycf2; Provisiona 91.4 1.7 3.7E-05 57.1 12.7 28 206-233 1629-1656(2281)
500 TIGR00455 apsK adenylylsulfate 91.4 0.85 1.8E-05 45.8 8.5 26 206-231 17-42 (184)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-85 Score=784.56 Aligned_cols=744 Identities=29% Similarity=0.418 Sum_probs=557.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhhhccccccchhccccc
Q 047598 35 GVDSELKKWEKKLRMIQAMLRDAEEKQLTDEAVKMWLDDLQDLAYDAEDILDEFATQALESKLMAENQDSTRQVLSFIPA 114 (1112)
Q Consensus 35 ~v~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1112)
++++.+..|+.+|..+++++++|++++.....++.|...+++++|++||.++.|.......+..+.-.. ..........
T Consensus 25 ~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~-~~~~~~~~c~ 103 (889)
T KOG4658|consen 25 GKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLST-RSVERQRLCL 103 (889)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh-hHHHHHHHhh
Confidence 678899999999999999999999998888899999999999999999999999988765543321110 0001111110
Q ss_pred cCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHhcccccCCCCCcCCCcccccCCCCCCCCCCcceecchhhHHHHHHHH
Q 047598 115 SLNPNAIMFNHSMGSKIKDICGGLEQLCHERIELGLQRIPGSVGTSSASAAQQRLPSSSVPTERAVYGRDKDKARILKMV 194 (1112)
Q Consensus 115 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L 194 (1112)
..+++..+..+..+.+++..+....+.++........+.. ....+..++.+...+.. ||.+..++++++.|
T Consensus 104 ------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L 174 (889)
T KOG4658|consen 104 ------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES--LDPREKVETRPIQSESD-VGLETMLEKLWNRL 174 (889)
T ss_pred ------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc--ccchhhcccCCCCcccc-ccHHHHHHHHHHHh
Confidence 1356777788888888888888888888765533211110 11112233334444444 99999999999999
Q ss_pred hcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccc-ccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCC-
Q 047598 195 LSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKS-LNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHL- 272 (1112)
Q Consensus 195 ~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~- 272 (1112)
.. + +..+++|+||||+||||||++++|+.. +. .+|+.++||+||+.++...++++|++.++......
T Consensus 175 ~~-d-------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~---~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~ 243 (889)
T KOG4658|consen 175 ME-D-------DVGIVGIYGMGGVGKTTLARQIFNKFDEVG---NHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWE 243 (889)
T ss_pred cc-C-------CCCEEEEECCCcccHHHHHHHHhcccchhc---ccCceEEEEEEcccccHHhHHHHHHHHhccCCcccc
Confidence 86 1 238999999999999999999999998 77 99999999999999999999999999998754322
Q ss_pred -CChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhhhhh-cCCCceeeCCCCChHh
Q 047598 273 -NTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHVAST-MGPIKHYNLKRLLDED 350 (1112)
Q Consensus 273 -~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~-~~~~~~~~l~~L~~~~ 350 (1112)
...++++..|.+.|++|||+|||||||++ .+|+.+..++|....||+|++|||+..|+.. +++...+++++|+.+|
T Consensus 244 ~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~e 321 (889)
T KOG4658|consen 244 DKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEE 321 (889)
T ss_pred hhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccc
Confidence 23468889999999999999999999998 5699999999999899999999999999998 7888899999999999
Q ss_pred HHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCC-CHHHHHHHHhccccCC----CC-CCCchHH
Q 047598 351 CWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTT-RCDLWEDILDSKIWDL----PQ-QSGILPV 424 (1112)
Q Consensus 351 ~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~w~~~l~~~~~~~----~~-~~~i~~~ 424 (1112)
||+||++.||.... ...+.++++|++|+++|+|+|||++++|+.|+.+ +..+|+++.+...+.. +. .+.+.++
T Consensus 322 aW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~i 400 (889)
T KOG4658|consen 322 AWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPI 400 (889)
T ss_pred cHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHh
Confidence 99999999987643 3334489999999999999999999999999999 8889999998765542 22 4689999
Q ss_pred HHHHhcCCchHHHHHHhHhhcCCCCceechHHHHHHHHhCCcccccCCCchHHHHHHHHHHHHhhCCccccccC--CCcc
Q 047598 425 LRLSYHHLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGSQCFHDLVSRSIFQPSSR--NSCK 502 (1112)
Q Consensus 425 l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~--~~~~ 502 (1112)
|++||+.||+++|.||+|||+||+||.|+++.|+.+|||||||.+.+++..++++|..|+.+|++++|++.... +...
T Consensus 401 LklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~ 480 (889)
T KOG4658|consen 401 LKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKET 480 (889)
T ss_pred hhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeE
Confidence 99999999999999999999999999999999999999999999878889999999999999999999998763 4568
Q ss_pred ceechhHHHHHHHhhc-----cceEeeccc-----ccccccCCceeEEEEEeCCCCCccchhhhccCCCcceeccccccC
Q 047598 503 FVMHDLVHDLAQLVSG-----ETIFRLEEA-----NAISRRFERVRHSSYVRGGYDGRSKFEVFYQTENLRTFLPIRIRG 572 (1112)
Q Consensus 503 ~~~H~lv~~~~~~~~~-----~~~~~~~~~-----~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~ 572 (1112)
|.|||+||++|.++++ ++...+... ......+..+|+++++.+.... ...-..+++|+||.+..+..
T Consensus 481 ~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 481 VKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSD 557 (889)
T ss_pred EEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCccceEEEeecch
Confidence 9999999999999999 555444432 1112345678999998875422 23334566899999987642
Q ss_pred CcccccccccccccccccCCcccEEEecccc-cccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCC
Q 047598 573 GTICSYITGIVLSDLLPKFKRLRVLSLQRYY-IGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRL 651 (1112)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l 651 (1112)
....+...+|..++.||||||++|. +..+|+.++.|.+||||+|+++.++.+|.++++|..|.+||+..+..+
T Consensus 558 ------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 558 ------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred ------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc
Confidence 1244556678999999999999885 799999999999999999999999999999999999999999998777
Q ss_pred cccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCcccc---ccccccCCeeEEecccCCCC
Q 047598 652 KKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDL---KNLKFLGGELCISGLENVND 728 (1112)
Q Consensus 652 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l---~~L~~L~~~l~i~~l~~~~~ 728 (1112)
..+|..+..|++||+|.+.... ...-...++.+.+|++|....+...+. ..+..+ ..|..+...+.+.. .
T Consensus 632 ~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-----~ 704 (889)
T KOG4658|consen 632 ESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEG-----C 704 (889)
T ss_pred ccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcc-----c
Confidence 7787777779999999997654 111112244445555554443332222 112222 22222111111111 2
Q ss_pred hhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCC---CCCCCceEEEeccCCCCCCCccCCCCCCcee
Q 047598 729 SQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQ---PHKCIKNLTIKQYNGARFPSWLGDPLFSKME 805 (1112)
Q Consensus 729 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~ 805 (1112)
........+..+.+|+.|.+..+........ ...... ..+++..+.+.++.....+.|... .++|+
T Consensus 705 ~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~---------~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f--~~~L~ 773 (889)
T KOG4658|consen 705 SKRTLISSLGSLGNLEELSILDCGISEIVIE---------WEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF--APHLT 773 (889)
T ss_pred ccceeecccccccCcceEEEEcCCCchhhcc---------cccccchhhhHHHHHHHHhhccccccccchhhc--cCccc
Confidence 2233445566777888888877654211100 000000 122344444455555555555533 56777
Q ss_pred EEEEcCcCCCCC-CCCCCCCCCcce
Q 047598 806 VLKLENCWNCTS-LPSLGLLSSLRE 829 (1112)
Q Consensus 806 ~L~L~~~~~~~~-l~~l~~l~~L~~ 829 (1112)
.|.+..|...+. +|....+..++.
T Consensus 774 ~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 774 SLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred EEEEecccccccCCCHHHHhhhccc
Confidence 777776665543 334444444444
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.8e-64 Score=638.59 Aligned_cols=478 Identities=20% Similarity=0.259 Sum_probs=365.6
Q ss_pred CCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEe---CCC-
Q 047598 176 TERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCI---SDV- 251 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~---~~~- 251 (1112)
+...+|||+..++++..+|.. ....+++|+||||||+||||||+++|+... ..|+..+|+.- +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~-----~~F~g~vfv~~~~v~~~~ 250 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHL------ESEEVRMVGIWGSSGIGKTTIARALFSRLS-----RQFQSSVFIDRAFISKSM 250 (1153)
T ss_pred ccccccchHHHHHHHHHHHcc------ccCceEEEEEEcCCCCchHHHHHHHHHHHh-----hcCCeEEEeeccccccch
Confidence 345699999999999998854 345689999999999999999999999765 56777766631 111
Q ss_pred ----------CC-HHHHHHHHHHHhcCCCC-CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCC
Q 047598 252 ----------FD-VLSISKALLESITRKPC-HLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPN 319 (1112)
Q Consensus 252 ----------~~-~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 319 (1112)
++ ...++++++.++..... .... ...+++.+++||+||||||||+. .+|+.+.....+.++|
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~G 324 (1153)
T PLN03210 251 EIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSG 324 (1153)
T ss_pred hhcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCC
Confidence 11 23455566665543321 1111 14567889999999999999875 6788887766677899
Q ss_pred cEEEEEcCChhhhhhcCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCC
Q 047598 320 SKMIITTRHSHVASTMGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTT 399 (1112)
Q Consensus 320 s~iivTTR~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~ 399 (1112)
|+||||||+++++..++..++|+++.|++++||+||+++||+... ++...++++++|+++|+|+|||++++|++|+++
T Consensus 325 srIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k 402 (1153)
T PLN03210 325 SRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR 402 (1153)
T ss_pred cEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC
Confidence 999999999999988777889999999999999999999997643 345678899999999999999999999999999
Q ss_pred CHHHHHHHHhccccCCCCCCCchHHHHHHhcCCch-HHHHHHhHhhcCCCCceechHHHHHHHHhCCcccccCCCchHHH
Q 047598 400 RCDLWEDILDSKIWDLPQQSGILPVLRLSYHHLPS-YLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLED 478 (1112)
Q Consensus 400 ~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~ 478 (1112)
+..+|+.++++..... +..|.++|++||++|++ ..|.||+++|+||.+..++ .+..|++.+....
T Consensus 403 ~~~~W~~~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~--------- 468 (1153)
T PLN03210 403 DKEDWMDMLPRLRNGL--DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV--------- 468 (1153)
T ss_pred CHHHHHHHHHHHHhCc--cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc---------
Confidence 9999999998765432 35799999999999987 5999999999999987654 4777888765532
Q ss_pred HHHHHHHHHhhCCccccccCCCccceechhHHHHHHHhhccceE------eecccccc------cccCCceeEEEEEeCC
Q 047598 479 LGSQCFHDLVSRSIFQPSSRNSCKFVMHDLVHDLAQLVSGETIF------RLEEANAI------SRRFERVRHSSYVRGG 546 (1112)
Q Consensus 479 ~~~~~~~~L~~~~l~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~------~~~~~~~~------~~~~~~~r~ls~~~~~ 546 (1112)
+..++.|++++|++... ..+.|||++|++|++++.++.. .+...... ..-...++++++....
T Consensus 469 --~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 469 --NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred --hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence 12288999999998754 3699999999999999876531 11111100 1112456666654433
Q ss_pred CCCc-cchhhhccCCCcceeccccccCCcccccccccccccccccC-CcccEEEecccccccccccccCCCcCcEEEccc
Q 047598 547 YDGR-SKFEVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKF-KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLAD 624 (1112)
Q Consensus 547 ~~~~-~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~ 624 (1112)
.... ....+|..|.+|+.|.+....... .......++.. |..+ .+||.|++.++.+..+|..| ...+|++|+|++
T Consensus 544 ~~~~~i~~~aF~~m~~L~~L~~~~~~~~~-~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~ 620 (1153)
T PLN03210 544 IDELHIHENAFKGMRNLLFLKFYTKKWDQ-KKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQG 620 (1153)
T ss_pred cceeeecHHHHhcCccccEEEEecccccc-cccceeecCcc-hhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcC
Confidence 2211 123567889999998876542100 00111223333 3333 57999999999999999887 578999999999
Q ss_pred cccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeee
Q 047598 625 TMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFI 695 (1112)
Q Consensus 625 n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~ 695 (1112)
|.+..+|.++..+++|++|+|++|..+..+|. ++.+++|++|++++|..+..+|..++++++|+.|++.+
T Consensus 621 s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred ccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 99999999999999999999999878888885 88899999999999988899999899999998887654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.8e-43 Score=381.94 Aligned_cols=275 Identities=35% Similarity=0.595 Sum_probs=224.0
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHH
Q 047598 183 RDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALL 262 (1112)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 262 (1112)
||.++++|.++|.. ...+.++|+|+||||+||||||++++++..++ .+|+.++|+.++...+...++..|+
T Consensus 1 re~~~~~l~~~L~~------~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~---~~f~~v~wv~~~~~~~~~~~~~~i~ 71 (287)
T PF00931_consen 1 REKEIEKLKDWLLD------NSNEVRVVAIVGMGGIGKTTLARQVARDLRIK---NRFDGVIWVSLSKNPSLEQLLEQIL 71 (287)
T ss_dssp -HHHHHHHHHHHHT------TTTSSEEEEEEESTTSSHHHHHHHHHCHHHHC---CCCTEEEEEEEES-SCCHHHHHHHH
T ss_pred CHHHHHHHHHHhhC------CCCCeEEEEEEcCCcCCcceeeeecccccccc---ccccccccccccccccccccccccc
Confidence 78999999999987 33678999999999999999999999986655 8899999999999999999999999
Q ss_pred HHhcCCCC---CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhhhhhcCC-C
Q 047598 263 ESITRKPC---HLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHVASTMGP-I 338 (1112)
Q Consensus 263 ~~l~~~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~-~ 338 (1112)
.+++.... ...+.++....+.+.|+++++||||||||+. ..|+.+...++....||+||||||+..++..++. .
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~ 149 (287)
T PF00931_consen 72 RQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTD 149 (287)
T ss_dssp HHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCE
T ss_pred ccccccccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccc
Confidence 99988743 4467788999999999999999999999976 5888888888777789999999999999877664 6
Q ss_pred ceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCC-CHHHHHHHHhccccCCC-
Q 047598 339 KHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTT-RCDLWEDILDSKIWDLP- 416 (1112)
Q Consensus 339 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~w~~~l~~~~~~~~- 416 (1112)
..+++++|+.+||++||.+.++... ....+..++.+++|+++|+|+||||+++|++|+.+ +..+|+.+++.......
T Consensus 150 ~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~ 228 (287)
T PF00931_consen 150 KVIELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE 228 (287)
T ss_dssp EEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred ccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999998765 22334445678999999999999999999999776 77889998876443332
Q ss_pred ---CCCCchHHHHHHhcCCchHHHHHHhHhhcCCCCceechHHHHHHHHhCCcccc
Q 047598 417 ---QQSGILPVLRLSYHHLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQ 469 (1112)
Q Consensus 417 ---~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~ 469 (1112)
....+..++.+||+.||++.|+||+|||+||+++.|+++.++++|+++|||..
T Consensus 229 ~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 229 SRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 14679999999999999999999999999999999999999999999999975
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.9e-35 Score=374.62 Aligned_cols=492 Identities=18% Similarity=0.227 Sum_probs=286.3
Q ss_pred ceeEEEEEeCCCCCccchhhhccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccc-cccccccCC
Q 047598 536 RVRHSSYVRGGYDGRSKFEVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIG-ELLVSFEDL 614 (1112)
Q Consensus 536 ~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~lp~~~~~l 614 (1112)
+++.+.+..+..... ....+..+++|+.|.+.++. +.+.++...+..+++|++|+|++|.+. .+|. +.+
T Consensus 70 ~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~-------~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l 139 (968)
T PLN00113 70 RVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQ-------LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI 139 (968)
T ss_pred cEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCc-------cCCcCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence 455555544332221 23455667777777776553 233445555556666677776666653 2332 345
Q ss_pred CcCcEEEccccccc-cccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCe
Q 047598 615 KLLRYLNLADTMIR-TLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSN 693 (1112)
Q Consensus 615 ~~Lr~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~ 693 (1112)
++|++|+|++|.+. .+|..++++++|++|+|++|.....+|..++++++|++|++++|.+...+|..++++++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 56666666666654 45666666666666666666444556666666666666666666655555666666666666666
Q ss_pred eeeccC-CcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhh--------
Q 047598 694 FIVGKG-EAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEE-------- 764 (1112)
Q Consensus 694 ~~~~~~-~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-------- 764 (1112)
..+... ..|..+..+++|+.|. + ..+......+..+.++++|+.|+++.|......+......
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~----L----~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLD----L----VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEE----C----cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 555433 2334445555554442 1 1112222333445555555555555543311110000000
Q ss_pred ----HHHhhccCCCCCCCCceEEEeccCCC-CCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcceEEecCCCCc
Q 047598 765 ----YAVGVLDKLQPHKCIKNLTIKQYNGA-RFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLRELTIQGLTKL 838 (1112)
Q Consensus 765 ----~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l 838 (1112)
........+..+++|+.|++.+|... .+|.++.. +++|+.|+|++|.+.+.+| .++.+++|+.|++++|...
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS--LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc--CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 00001111223344444444444332 23333332 4445555555554444443 3444455555555544433
Q ss_pred eecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEe
Q 047598 839 KSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVA 918 (1112)
Q Consensus 839 ~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~ 918 (1112)
..+|..+.. +++|+.|++++ +......+..+..+++|+.|++++ |++++.+|..+..++.|..+
T Consensus 370 ~~~p~~~~~------~~~L~~L~l~~---------n~l~~~~p~~~~~~~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 370 GEIPEGLCS------SGNLFKLILFS---------NSLEGEIPKSLGACRSLRRVRLQD-NSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred eeCChhHhC------cCCCCEEECcC---------CEecccCCHHHhCCCCCCEEECcC-CEeeeECChhHhcCCCCCEE
Confidence 333333322 34455555544 222334455567788899999988 57777788877777777654
Q ss_pred EEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCCCCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEccc
Q 047598 919 TFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEEGFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGC 998 (1112)
Q Consensus 919 ~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 998 (1112)
+ ++++.....+|..+..+++|+.|++++|...+.+|.....++|+.|++++| ...+..+..+.++++|+.|+|++|
T Consensus 434 ~--Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 434 D--ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN--QFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred E--CcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCC--ccCCccChhhhhhhccCEEECcCC
Confidence 4 444444446677777889999999999988777776655688999999998 455666777888999999999998
Q ss_pred CCcccc-ccCcccccccCCCCccEEEecCCCCCCc----CCCCCCCCeEEeecCCCCCcCCC-CCCCCCccEEEEccCcc
Q 047598 999 HDDEVE-CFPNEEMGVMLPSSLTHLTIAGFKKLKK----LSLMTSLEYLWIKNCPNLASFPE-LGLPSSLTQLYIDHCPL 1072 (1112)
Q Consensus 999 ~~~~l~-~l~~~~~~~~~~~sL~~L~l~~~~~L~~----l~~l~~L~~L~ls~c~~l~~lp~-~~~~~~L~~L~l~~c~~ 1072 (1112)
. +. .+|.. +. ..++|+.|++++|.-... +..+++|+.|++++|+....+|. +..+++|+.|++++|+.
T Consensus 510 ~---l~~~~p~~-~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 510 K---LSGEIPDE-LS--SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred c---ceeeCChH-Hc--CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 6 33 33332 21 246789999988654433 34789999999999988888885 77788999999999986
Q ss_pred h
Q 047598 1073 V 1073 (1112)
Q Consensus 1073 l 1073 (1112)
.
T Consensus 584 ~ 584 (968)
T PLN00113 584 H 584 (968)
T ss_pred e
Confidence 4
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.6e-33 Score=355.77 Aligned_cols=483 Identities=18% Similarity=0.193 Sum_probs=312.5
Q ss_pred CCcceeccccccCCcccccccccccccccccCCcccEEEecccccc-cccccc-cCCCcCcEEEccccccc-cccccccC
Q 047598 560 ENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIG-ELLVSF-EDLKLLRYLNLADTMIR-TLPESTNS 636 (1112)
Q Consensus 560 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~lp~~~-~~l~~Lr~L~Ls~n~i~-~lp~~i~~ 636 (1112)
.+++.+.+.++. +.+. .+..|..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|.+. .+|. +.
T Consensus 69 ~~v~~L~L~~~~-------i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~ 138 (968)
T PLN00113 69 SRVVSIDLSGKN-------ISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GS 138 (968)
T ss_pred CcEEEEEecCCC-------cccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cc
Confidence 456777766542 2222 3455788999999999999985 688765 49999999999999987 4554 57
Q ss_pred CCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccC-CcccCccccccccccC
Q 047598 637 LLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKG-EAISGLEDLKNLKFLG 715 (1112)
Q Consensus 637 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~-~~~~~l~~l~~L~~L~ 715 (1112)
+++|++|+|++|.....+|..++++++|++|++++|.+...+|..++++++|++|++.++... ..|..+..+.+|+.|.
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 999999999999666689999999999999999999977789999999999999999988754 3456677777777663
Q ss_pred CeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCC-CCCC
Q 047598 716 GELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGA-RFPS 794 (1112)
Q Consensus 716 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~ 794 (1112)
...+......+..+.++++|+.|++++|.... .....+..+++|+.|.+.++... .+|.
T Consensus 219 --------L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 219 --------LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG------------PIPSSLGNLKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred --------CcCCccCCcCChhHhcCCCCCEEECcCceecc------------ccChhHhCCCCCCEEECcCCeeeccCch
Confidence 12233444566678899999999999886421 22233455677888888877653 4566
Q ss_pred ccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCccccccc
Q 047598 795 WLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDT 873 (1112)
Q Consensus 795 ~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 873 (1112)
++.. +++|+.|+|++|.+...+| .+.++++|+.|++++|.....++..+.. +++|+.|+++++.
T Consensus 279 ~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------l~~L~~L~L~~n~------- 343 (968)
T PLN00113 279 SIFS--LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS------LPRLQVLQLWSNK------- 343 (968)
T ss_pred hHhh--ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc------CCCCCEEECcCCC-------
Confidence 6665 7888888888888776666 5778888888888887665555544433 7788888887632
Q ss_pred ccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCc
Q 047598 874 NIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSIL 953 (1112)
Q Consensus 874 ~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~ 953 (1112)
.....+..+..+++|+.|++++ |++++.+|..+..+..|+. +.+.++.....+|..+..+++|+.|++++|+...
T Consensus 344 --l~~~~p~~l~~~~~L~~L~Ls~-n~l~~~~p~~~~~~~~L~~--L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 344 --FSGEIPKNLGKHNNLTVLDLST-NNLTGEIPEGLCSSGNLFK--LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred --CcCcCChHHhCCCCCcEEECCC-CeeEeeCChhHhCcCCCCE--EECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 2223344455666677777766 4565556655444444432 2233333333455555555555555555554444
Q ss_pred ccCCC-CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCcc--------------------cc-ccCcccc
Q 047598 954 SFPEE-GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDE--------------------VE-CFPNEEM 1011 (1112)
Q Consensus 954 ~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--------------------l~-~l~~~~~ 1011 (1112)
.+|.. ..+++|+.|++++| ...+..+..+..+++|+.|++++|.... +. .+|. .+
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~-~~ 495 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNN--NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR-KL 495 (968)
T ss_pred ECChhHhcCCCCCEEECcCC--cccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh-hh
Confidence 44332 33455555555555 2333333334444555555555443110 11 1111 11
Q ss_pred cccCCCCccEEEecCCCCCCc----CCCCCCCCeEEeecCCCCCcCCC-CCCCCCccEEEEccCcchHHhhccCCCCccc
Q 047598 1012 GVMLPSSLTHLTIAGFKKLKK----LSLMTSLEYLWIKNCPNLASFPE-LGLPSSLTQLYIDHCPLVKKECKMDKGKEWS 1086 (1112)
Q Consensus 1012 ~~~~~~sL~~L~l~~~~~L~~----l~~l~~L~~L~ls~c~~l~~lp~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 1086 (1112)
...++|+.|++++|.-... +..+++|++|+|++|.....+|. +..+++|+.|++++|..... ......
T Consensus 496 --~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~l~ 568 (968)
T PLN00113 496 --GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE-----IPKNLG 568 (968)
T ss_pred --hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc-----CChhHh
Confidence 0124566666666543322 33677788888888877767764 66777888888888765431 122333
Q ss_pred cccccceeEeCCeecc
Q 047598 1087 KIAHIPCVEIDDKFIY 1102 (1112)
Q Consensus 1087 ki~~i~~~~~~~~~~~ 1102 (1112)
.+..+..+.+.+|.+.
T Consensus 569 ~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 569 NVESLVQVNISHNHLH 584 (968)
T ss_pred cCcccCEEeccCCcce
Confidence 4555666666665543
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1.2e-28 Score=251.55 Aligned_cols=442 Identities=21% Similarity=0.222 Sum_probs=240.1
Q ss_pred cccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEE
Q 047598 588 LPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHL 667 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 667 (1112)
+..+..+..|+.++|++..+|..++.+..|+.|+.++|.+.++|++|+.+..|+.|+..+| .+..+|.+++++.+|..|
T Consensus 87 ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 87 IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKL 165 (565)
T ss_pred HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHh
Confidence 3444445555555555555555555555555555555555555555555555555555554 455555555555555555
Q ss_pred eecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceE
Q 047598 668 DIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLS 747 (1112)
Q Consensus 668 ~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 747 (1112)
++.+|. ++.+|+..-+++.|++|+...+..+..|..++.+.+|.-|. ...+.+. .. ..|.++..|..|+
T Consensus 166 ~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly--------L~~Nki~-~l-Pef~gcs~L~Elh 234 (565)
T KOG0472|consen 166 DLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY--------LRRNKIR-FL-PEFPGCSLLKELH 234 (565)
T ss_pred hccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH--------hhhcccc-cC-CCCCccHHHHHHH
Confidence 555555 44444443345555555555555555555555444444331 0001111 11 1344445555555
Q ss_pred EEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCc
Q 047598 748 LEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSL 827 (1112)
Q Consensus 748 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 827 (1112)
+..+.. +.-..+.+..++++..|++..|...++|..+.. +.+|++|++++|.+..-.+.+|++ +|
T Consensus 235 ~g~N~i------------~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~is~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 235 VGENQI------------EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDISSLPYSLGNL-HL 299 (565)
T ss_pred hcccHH------------HhhHHHHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCccccCCcccccc-ee
Confidence 543322 112223344567788888888888999988875 889999999999887766699999 99
Q ss_pred ceEEecCCCCceecCccccCCCCcccCcccceeec-CCCCccccccccc-CCCC----cCCcccCCCccceEeEecCCCC
Q 047598 828 RELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSF-ENLPEWEYWDTNI-KGND----HADRVEIFPRLHKLSIMECPKL 901 (1112)
Q Consensus 828 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l-~~~~~l~~~~~~~-~~~~----~~~~~~~~p~L~~L~l~~c~~L 901 (1112)
+.|.+.+|+ ++.+-.+....+... -|++|.= ..+..+..-.... .... .......+-+.+.|++++ .++
T Consensus 300 ~~L~leGNP-lrTiRr~ii~~gT~~---vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~ql 374 (565)
T KOG0472|consen 300 KFLALEGNP-LRTIRREIISKGTQE---VLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQL 374 (565)
T ss_pred eehhhcCCc-hHHHHHHHHcccHHH---HHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-ccc
Confidence 999999976 333333332221111 1222211 0011111100000 0000 111122344677888888 677
Q ss_pred CCCCCCC-CCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCC-CCCCCCCeEEEcCCccccccc
Q 047598 902 SGKLPEL-LPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEE-GFPTNLASLVIGGDVKMYKGL 979 (1112)
Q Consensus 902 ~~~~p~~-~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 979 (1112)
+ .+|.. |..-+.=-+..++++. +.+.++|..+..+..+.+.-+..++.+.-+|.. ..+++|..|++++| .. ..
T Consensus 375 t-~VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN--~L-n~ 449 (565)
T KOG0472|consen 375 T-LVPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN--LL-ND 449 (565)
T ss_pred c-cCCHHHHHHhhhcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc--hh-hh
Confidence 7 56642 3222211111222222 334567766666666655555555455555543 55678888888887 32 23
Q ss_pred ccccCCCCCCcCEEEEcccCCccccccCcccccccCCCCccEEEecCCCCCCc-----CCCCCCCCeEEeecCCCCCcCC
Q 047598 980 IQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKKLKK-----LSLMTSLEYLWIKNCPNLASFP 1054 (1112)
Q Consensus 980 ~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L~~-----l~~l~~L~~L~ls~c~~l~~lp 1054 (1112)
.|..++.+..|+.|+|+.|+ +..+|+-.. .+..++.+ +..-..+.. +.++.+|..||+.+|...+..|
T Consensus 450 LP~e~~~lv~Lq~LnlS~Nr---Fr~lP~~~y---~lq~lEtl-las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp 522 (565)
T KOG0472|consen 450 LPEEMGSLVRLQTLNLSFNR---FRMLPECLY---ELQTLETL-LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP 522 (565)
T ss_pred cchhhhhhhhhheecccccc---cccchHHHh---hHHHHHHH-HhccccccccChHHhhhhhhcceeccCCCchhhCCh
Confidence 45566777778888888875 555554210 01112221 222233332 3378999999999995444444
Q ss_pred CCCCCCCccEEEEccCcch
Q 047598 1055 ELGLPSSLTQLYIDHCPLV 1073 (1112)
Q Consensus 1055 ~~~~~~~L~~L~l~~c~~l 1073 (1112)
.++++++|++|+++|||.-
T Consensus 523 ~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 523 ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhccccceeEEEecCCccC
Confidence 6999999999999999864
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-25 Score=238.64 Aligned_cols=251 Identities=17% Similarity=0.180 Sum_probs=173.4
Q ss_pred CCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCC-CCCCCCCCCcceEEecCCCCceecCccccCCCCc
Q 047598 773 LQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTS-LPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFS 851 (1112)
Q Consensus 773 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~ 851 (1112)
+..+.+|..|.++.|....+|...+. .++.|+.|+|..|.+-.. .-.+.++++|+.|.+..|..-+--...|++
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~---- 267 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG---- 267 (873)
T ss_pred ccccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee----
Confidence 33444677777888888888776553 388899999988876432 346888899999999887544444455666
Q ss_pred ccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccC
Q 047598 852 KPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEAL 931 (1112)
Q Consensus 852 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~l 931 (1112)
+.++++|+++. |.........+.++.+|+.|++++ |.+...-+..+.-.++|+.++|+.+.+..+.
T Consensus 268 --l~kme~l~L~~---------N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N~i~~l~-- 333 (873)
T KOG4194|consen 268 --LEKMEHLNLET---------NRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSNRITRLD-- 333 (873)
T ss_pred --ecccceeeccc---------chhhhhhcccccccchhhhhccch-hhhheeecchhhhcccceeEeccccccccCC--
Confidence 78888888876 222222333446788889999998 7877556666766777776666666555433
Q ss_pred cccCCCCCCcCEEEEecCCCCcccCCCC--CCCCCCeEEEcCCccccc-ccccccCCCCCCcCEEEEcccCCccccccCc
Q 047598 932 PNDMHRLNFLEHLRIGQCPSILSFPEEG--FPTNLASLVIGGDVKMYK-GLIQWGLHRLTALRRLEIDGCHDDEVECFPN 1008 (1112)
Q Consensus 932 p~~l~~l~~L~~L~L~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~ 1008 (1112)
+..+..+..|++|+|++| .+..+.+.. .+.+|+.|+|+.|..-.. ......|.++++|++|++.||+ ++++|.
T Consensus 334 ~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq---lk~I~k 409 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ---LKSIPK 409 (873)
T ss_pred hhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce---eeecch
Confidence 345677888999999988 555565543 378899999998842211 1123347789999999999987 777777
Q ss_pred ccccccCCCCccEEEecCCCCCCcCCCCCCCCeEEeecCCCCCcCCC-CCCCCCccEEEEcc
Q 047598 1009 EEMGVMLPSSLTHLTIAGFKKLKKLSLMTSLEYLWIKNCPNLASFPE-LGLPSSLTQLYIDH 1069 (1112)
Q Consensus 1009 ~~~~~~~~~sL~~L~l~~~~~L~~l~~l~~L~~L~ls~c~~l~~lp~-~~~~~~L~~L~l~~ 1069 (1112)
..|+| +++|+.|++.+|+....-|. +..+ .|++|.+..
T Consensus 410 rAfsg----------------------l~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 410 RAFSG----------------------LEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhcc----------------------CcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 66655 78899999999976666564 3333 777776543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=7.6e-26 Score=242.71 Aligned_cols=327 Identities=19% Similarity=0.211 Sum_probs=182.1
Q ss_pred cccCCcccEEEecccccccccccccCCCcCcEEEccccccc--cccccccCCCCCcEEeecCCCCCcccCccccCCcccc
Q 047598 588 LPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIR--TLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLH 665 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 665 (1112)
++.+.+|+.|.+.+|++.++...+..|+.||.+.+++|+++ -+|..|.+|..|.+|||++| .+.+.|..+..-+++-
T Consensus 51 L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSI 129 (1255)
T ss_pred HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcE
Confidence 44455555555555555444444455555555555555444 34555555555555555554 4555555555555555
Q ss_pred EEeecCCCccccCCCC-CCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccC
Q 047598 666 HLDIKGANLLREMPLG-MKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLK 744 (1112)
Q Consensus 666 ~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 744 (1112)
.|+|++|+ +..+|.. +-+|+.|-.|++++|.....|..+..|.+|+.|. .+.|.+.......+..+.+|+
T Consensus 130 VLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~--------Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 130 VLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK--------LSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred EEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh--------cCCChhhHHHHhcCccchhhh
Confidence 55555554 4444443 3344445555555554444444444444444332 222223233333344455666
Q ss_pred ceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCC
Q 047598 745 TLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLL 824 (1112)
Q Consensus 745 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 824 (1112)
.|.++..... ......++..+.+|..++++.|+...+|..+.. +++|+.|+||+|.+.+---..+..
T Consensus 201 vLhms~TqRT-----------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~--l~~LrrLNLS~N~iteL~~~~~~W 267 (1255)
T KOG0444|consen 201 VLHMSNTQRT-----------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYK--LRNLRRLNLSGNKITELNMTEGEW 267 (1255)
T ss_pred hhhcccccch-----------hhcCCCchhhhhhhhhccccccCCCcchHHHhh--hhhhheeccCcCceeeeeccHHHH
Confidence 6666654431 223334444556677777777777777777665 777777777777765433345556
Q ss_pred CCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCC
Q 047598 825 SSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGK 904 (1112)
Q Consensus 825 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~ 904 (1112)
.+|++|+++.| .+..+|...+. ++.|+.|.+.+ +....+.+|+.++.+.+|+.+...+ |+|. .
T Consensus 268 ~~lEtLNlSrN-QLt~LP~avcK------L~kL~kLy~n~--------NkL~FeGiPSGIGKL~~Levf~aan-N~LE-l 330 (1255)
T KOG0444|consen 268 ENLETLNLSRN-QLTVLPDAVCK------LTKLTKLYANN--------NKLTFEGIPSGIGKLIQLEVFHAAN-NKLE-L 330 (1255)
T ss_pred hhhhhhccccc-hhccchHHHhh------hHHHHHHHhcc--------CcccccCCccchhhhhhhHHHHhhc-cccc-c
Confidence 67777777774 45566665554 66666666655 2344455666677777777777777 6666 6
Q ss_pred CCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCC
Q 047598 905 LPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPE 957 (1112)
Q Consensus 905 ~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~ 957 (1112)
.|+.+..+..|+-+.| +|+.+.++|+.+.-++.|+.|++..|+.+...|.
T Consensus 331 VPEglcRC~kL~kL~L---~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKL---DHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred CchhhhhhHHHHHhcc---cccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 6766655444432222 3455666777777777777777777776655443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=4e-26 Score=244.79 Aligned_cols=361 Identities=21% Similarity=0.240 Sum_probs=202.6
Q ss_pred CcccEEEeccccc--ccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEee
Q 047598 592 KRLRVLSLQRYYI--GELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDI 669 (1112)
Q Consensus 592 ~~L~~L~L~~~~~--~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 669 (1112)
+-.|-.|+++|.+ ...|.++..++.++.|.|..+.+..+|+.++.|.+|++|.+++| .+..+-..++.|+.||.+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHhh
Confidence 4455666777765 34666777777777777777777777777777777777777776 55555566667777777777
Q ss_pred cCCCc-cccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEE
Q 047598 670 KGANL-LREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSL 748 (1112)
Q Consensus 670 ~~~~~-l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 748 (1112)
+.|+. ...+|..|-.|..|.+|+++.|.....|..+..-++
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn-------------------------------------- 127 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKN-------------------------------------- 127 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcC--------------------------------------
Confidence 76652 234666666666666666666554444333222221
Q ss_pred EeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcc
Q 047598 749 EWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLR 828 (1112)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 828 (1112)
+-.|++++|++..+|..++. .++.|-.|+||+|.+..-.|.+..+.+|+
T Consensus 128 ------------------------------~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 128 ------------------------------SIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred ------------------------------cEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 11233444444555554432 25556666666666544444566666677
Q ss_pred eEEecCCCCc----eecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCC
Q 047598 829 ELTIQGLTKL----KSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGK 904 (1112)
Q Consensus 829 ~L~L~~~~~l----~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~ 904 (1112)
+|+|++|+.. +.+|. +.+|+.|++++ .+.....+|..+..+.+|..++++. |.|. .
T Consensus 177 tL~Ls~NPL~hfQLrQLPs----------mtsL~vLhms~--------TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp-~ 236 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPS----------MTSLSVLHMSN--------TQRTLDNIPTSLDDLHNLRDVDLSE-NNLP-I 236 (1255)
T ss_pred hhhcCCChhhHHHHhcCcc----------chhhhhhhccc--------ccchhhcCCCchhhhhhhhhccccc-cCCC-c
Confidence 7777666432 11111 44445555444 1222223344455566666666666 5666 5
Q ss_pred CCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCC-CCCCCCCeEEEcCCccccccccccc
Q 047598 905 LPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEE-GFPTNLASLVIGGDVKMYKGLIQWG 983 (1112)
Q Consensus 905 ~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~ 983 (1112)
+|..+..+.+|..++|+-+.+ +.+........+|++|+++.| .++.+|.. ..++.|+.|.+.+|.-.+ ..+|++
T Consensus 237 vPecly~l~~LrrLNLS~N~i---teL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~F-eGiPSG 311 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKI---TELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTF-EGIPSG 311 (1255)
T ss_pred chHHHhhhhhhheeccCcCce---eeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccc-cCCccc
Confidence 666555555554433333222 233334445566677777766 44445543 445666666666664333 345666
Q ss_pred CCCCCCcCEEEEcccCCccccccCcccccccCCCCccEEEecCCCCCCcCCCCCCCCeEEeecCCCCCcCCC-CCCCCCc
Q 047598 984 LHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKKLKKLSLMTSLEYLWIKNCPNLASFPE-LGLPSSL 1062 (1112)
Q Consensus 984 ~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L~~l~~l~~L~~L~ls~c~~l~~lp~-~~~~~~L 1062 (1112)
++.|.+|+.+..++|. +.-+|+. +..|+.|+.|.+++|. +-.+|+ +..++.|
T Consensus 312 IGKL~~Levf~aanN~---LElVPEg-----------------------lcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l 364 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNK---LELVPEG-----------------------LCRCVKLQKLKLDHNR-LITLPEAIHLLPDL 364 (1255)
T ss_pred hhhhhhhHHHHhhccc---cccCchh-----------------------hhhhHHHHHhcccccc-eeechhhhhhcCCc
Confidence 6677777777666654 3333321 2235666666666663 333443 5556666
Q ss_pred cEEEEccCcchH
Q 047598 1063 TQLYIDHCPLVK 1074 (1112)
Q Consensus 1063 ~~L~l~~c~~l~ 1074 (1112)
+.|++..||.+.
T Consensus 365 ~vLDlreNpnLV 376 (1255)
T KOG0444|consen 365 KVLDLRENPNLV 376 (1255)
T ss_pred ceeeccCCcCcc
Confidence 666666666553
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=2.9e-25 Score=250.64 Aligned_cols=435 Identities=20% Similarity=0.189 Sum_probs=258.1
Q ss_pred ccccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccE
Q 047598 587 LLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHH 666 (1112)
Q Consensus 587 ~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 666 (1112)
+..+.-+|++||+++|.+...|..+..+.+|+.|+++.|.|..+|.++.++.+|++|+|.+| .+..+|.++..+++|++
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQY 118 (1081)
T ss_pred HhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccc
Confidence 34445569999999999999999999999999999999999999999999999999999997 89999999999999999
Q ss_pred EeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCce
Q 047598 667 LDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTL 746 (1112)
Q Consensus 667 L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 746 (1112)
|++++|. ...+|..+..++.+..+...+|.... .++... .+.+. ...+.....+...+..+.+ .|
T Consensus 119 LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~---~lg~~~-ik~~~--------l~~n~l~~~~~~~i~~l~~--~l 183 (1081)
T KOG0618|consen 119 LDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQ---RLGQTS-IKKLD--------LRLNVLGGSFLIDIYNLTH--QL 183 (1081)
T ss_pred cccchhc-cCCCchhHHhhhHHHHHhhhcchhhh---hhcccc-chhhh--------hhhhhcccchhcchhhhhe--ee
Confidence 9999999 67889888888888888777662111 111111 11111 0001111111111222222 24
Q ss_pred EEEeCCCCCCCchh-----hhhhHHHhhccCCC-CCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCC
Q 047598 747 SLEWGSQFDNSQDE-----VMEEYAVGVLDKLQ-PHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPS 820 (1112)
Q Consensus 747 ~l~~~~~~~~~~~~-----~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~ 820 (1112)
+|+++... ..... .........+..+. .-++++.|....|.....-. .+...+|++++++++.+.....+
T Consensus 184 dLr~N~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~l~~lp~w 259 (1081)
T KOG0618|consen 184 DLRYNEME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV---HPVPLNLQYLDISHNNLSNLPEW 259 (1081)
T ss_pred ecccchhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc---ccccccceeeecchhhhhcchHH
Confidence 44444331 00000 00000000111110 12234444444443331111 11246788888888776544447
Q ss_pred CCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCC
Q 047598 821 LGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPK 900 (1112)
Q Consensus 821 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 900 (1112)
++.+++|+.|++.+|.. ..++...+. ..+|+.|.+..+ .-..++.....+.+|+.|+|.. |+
T Consensus 260 i~~~~nle~l~~n~N~l-~~lp~ri~~------~~~L~~l~~~~n----------el~yip~~le~~~sL~tLdL~~-N~ 321 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRL-VALPLRISR------ITSLVSLSAAYN----------ELEYIPPFLEGLKSLRTLDLQS-NN 321 (1081)
T ss_pred HHhcccceEecccchhH-HhhHHHHhh------hhhHHHHHhhhh----------hhhhCCCcccccceeeeeeehh-cc
Confidence 77888888888877543 444444433 455665555441 1112233345577888888888 77
Q ss_pred CCCCCCCCCCCcce--eEEeEEEEeccCCcccCccc-CCCCCCcCEEEEecCCCCcc-cCCCCCCCCCCeEEEcCCcccc
Q 047598 901 LSGKLPELLPSLET--LVVATFVIANCEKLEALPND-MHRLNFLEHLRIGQCPSILS-FPEEGFPTNLASLVIGGDVKMY 976 (1112)
Q Consensus 901 L~~~~p~~~~~L~~--L~~~~L~~~~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~l~~~~~~~ 976 (1112)
|. .+|..+-.... |..+ -..+..+..+|.. -..++.|+.|.+.+|..... +|......+|+.|+|++| ..
T Consensus 322 L~-~lp~~~l~v~~~~l~~l---n~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN--rL 395 (1081)
T KOG0618|consen 322 LP-SLPDNFLAVLNASLNTL---NVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN--RL 395 (1081)
T ss_pred cc-ccchHHHhhhhHHHHHH---hhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc--cc
Confidence 77 56653211110 1111 1223334444421 12456677888887755533 343355678888888888 44
Q ss_pred cccccccCCCCCCcCEEEEcccCCccccccCcccccccCCCCccEEEecCCCCCCcCC---CCCCCCeEEeecCCCCCcC
Q 047598 977 KGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKKLKKLS---LMTSLEYLWIKNCPNLASF 1053 (1112)
Q Consensus 977 ~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L~~l~---~l~~L~~L~ls~c~~l~~l 1053 (1112)
.......+.+++.|++|++|||+ ++.+|... ...+.|+.|...+ +.+.++| .++.|+.+|+|.|......
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNk---L~~Lp~tv---a~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNK---LTTLPDTV---ANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccch---hhhhhHHH---HhhhhhHHHhhcC-CceeechhhhhcCcceEEecccchhhhhh
Confidence 44455567778888888888876 66666433 1223444443322 2333333 6889999999998655443
Q ss_pred CCCCCC-CCccEEEEccCcc
Q 047598 1054 PELGLP-SSLTQLYIDHCPL 1072 (1112)
Q Consensus 1054 p~~~~~-~~L~~L~l~~c~~ 1072 (1112)
-....+ +.|++||++||+.
T Consensus 469 l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 469 LPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhCCCcccceeeccCCcc
Confidence 333344 8999999999985
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=4.4e-24 Score=228.30 Aligned_cols=357 Identities=18% Similarity=0.191 Sum_probs=192.7
Q ss_pred ccEEEecccccccc-cccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccC-ccccCCccccEEeecC
Q 047598 594 LRVLSLQRYYIGEL-LVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLP-SKMRNLINLHHLDIKG 671 (1112)
Q Consensus 594 L~~L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~ 671 (1112)
-++||+++|.+..+ +..|.++++|+.++|..|.+..+|.......+|+.|+|.+| .+..+. +.+..++.||.|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhh
Confidence 34566666666554 24456666666666666666666665555556666666665 333332 2455566666666666
Q ss_pred CCccccCCCC-CCCCCCCCccCeeeeccCCcc-cCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEE
Q 047598 672 ANLLREMPLG-MKELKNLRTLSNFIVGKGEAI-SGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLE 749 (1112)
Q Consensus 672 ~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~-~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 749 (1112)
|. +..+|.. +..-.+++.|++..|.+.... ..+..+.+|..|+ .+.|.+.......|+++++|+.|+|.
T Consensus 159 N~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk--------LsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 159 NL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK--------LSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred ch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeee--------cccCcccccCHHHhhhcchhhhhhcc
Confidence 65 4444432 444455666666665544321 2233333333332 12233333444456667777777777
Q ss_pred eCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcc
Q 047598 750 WGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLR 828 (1112)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~ 828 (1112)
.|.. .....-.++.+++|+.|.+..|.+..+....+- -+.++++|+|+.|++...-. ++-++..|+
T Consensus 230 rN~i------------rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy-~l~kme~l~L~~N~l~~vn~g~lfgLt~L~ 296 (873)
T KOG4194|consen 230 RNRI------------RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY-GLEKMEHLNLETNRLQAVNEGWLFGLTSLE 296 (873)
T ss_pred ccce------------eeehhhhhcCchhhhhhhhhhcCcccccCccee-eecccceeecccchhhhhhcccccccchhh
Confidence 6654 222233456677777777777777766554332 27888888888887654333 777888888
Q ss_pred eEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCC
Q 047598 829 ELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPEL 908 (1112)
Q Consensus 829 ~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~ 908 (1112)
.|+|++|. +..+....+. ..++|+.|++++ |......+..+..+..|++|+|++ |+++..--..
T Consensus 297 ~L~lS~Na-I~rih~d~Ws-----ftqkL~~LdLs~---------N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~a 360 (873)
T KOG4194|consen 297 QLDLSYNA-IQRIHIDSWS-----FTQKLKELDLSS---------NRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGA 360 (873)
T ss_pred hhccchhh-hheeecchhh-----hcccceeEeccc---------cccccCChhHHHHHHHhhhhcccc-cchHHHHhhH
Confidence 88888754 3333322222 156677777766 333333444455566677777777 6665322222
Q ss_pred ---CCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCCC--CCCCCCeEEEcCCccccccccccc
Q 047598 909 ---LPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEEG--FPTNLASLVIGGDVKMYKGLIQWG 983 (1112)
Q Consensus 909 ---~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~ 983 (1112)
+.+|+.|.+....++.|- +.-...+..+++|+.|.+.+| .++.++... .+++|+.|+|.+| -+...-+..
T Consensus 361 f~~lssL~~LdLr~N~ls~~I--EDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N--aiaSIq~nA 435 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCI--EDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN--AIASIQPNA 435 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEE--ecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC--cceeecccc
Confidence 233333333222233321 122223445666666666666 455555442 2556666666666 232333444
Q ss_pred CCCCCCcCEEEE
Q 047598 984 LHRLTALRRLEI 995 (1112)
Q Consensus 984 ~~~l~~L~~L~l 995 (1112)
|..+ .|++|.+
T Consensus 436 Fe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 436 FEPM-ELKELVM 446 (873)
T ss_pred cccc-hhhhhhh
Confidence 5444 5555543
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.7e-21 Score=249.64 Aligned_cols=353 Identities=21% Similarity=0.359 Sum_probs=245.1
Q ss_pred ccccccccCCcccEEEeccccc-------ccccccccCCC-cCcEEEccccccccccccccCCCCCcEEeecCCCCCccc
Q 047598 583 VLSDLLPKFKRLRVLSLQRYYI-------GELLVSFEDLK-LLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKL 654 (1112)
Q Consensus 583 ~~~~~~~~~~~L~~L~L~~~~~-------~~lp~~~~~l~-~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 654 (1112)
+....|.++++|+.|.+..+.. ..+|..+..++ +||+|++.++.++.+|..+ .+.+|+.|++++| .+..+
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L 626 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKL 626 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-ccccc
Confidence 3455688899999998865532 24677776664 6999999999999999887 5789999999997 78889
Q ss_pred CccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhh
Q 047598 655 PSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVRE 734 (1112)
Q Consensus 655 p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~ 734 (1112)
|.++..+++|+.|+|++|..+..+|. ++.+++|++|++.++.. |..+ +
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~------------L~~l-------------------p 674 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSS------------LVEL-------------------P 674 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCC------------cccc-------------------c
Confidence 99899999999999998876777774 77788888887654321 1111 1
Q ss_pred ccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCC
Q 047598 735 ATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWN 814 (1112)
Q Consensus 735 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~ 814 (1112)
..+.++++|+.|++++|.. ...+|..+ .+++|+.|+|++|..
T Consensus 675 ~si~~L~~L~~L~L~~c~~-----------------------------------L~~Lp~~i---~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCEN-----------------------------------LEILPTGI---NLKSLYRLNLSGCSR 716 (1153)
T ss_pred hhhhccCCCCEEeCCCCCC-----------------------------------cCccCCcC---CCCCCCEEeCCCCCC
Confidence 2233445555565554432 22344433 278899999999987
Q ss_pred CCCCCCCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEe
Q 047598 815 CTSLPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLS 894 (1112)
Q Consensus 815 ~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~ 894 (1112)
...+|.. .++|+.|+|++|. +..+|... .+++|+.|.+.++.....|.. . ....+.....+++|+.|+
T Consensus 717 L~~~p~~--~~nL~~L~L~~n~-i~~lP~~~-------~l~~L~~L~l~~~~~~~l~~~-~-~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 717 LKSFPDI--STNISWLDLDETA-IEEFPSNL-------RLENLDELILCEMKSEKLWER-V-QPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred ccccccc--cCCcCeeecCCCc-cccccccc-------cccccccccccccchhhcccc-c-cccchhhhhccccchhee
Confidence 7777743 4689999998865 55665432 278888888887654333321 1 111111223467899999
Q ss_pred EecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCCCCCCCCCeEEEcCCcc
Q 047598 895 IMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEEGFPTNLASLVIGGDVK 974 (1112)
Q Consensus 895 l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~ 974 (1112)
+++|+.+. .+|..+.++++|+ .|.+.+|..++.+|..+ ++++|+.|++++|..+..+|. .+.+|+.|+|++|.
T Consensus 785 Ls~n~~l~-~lP~si~~L~~L~--~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~- 857 (1153)
T PLN03210 785 LSDIPSLV-ELPSSIQNLHKLE--HLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTG- 857 (1153)
T ss_pred CCCCCCcc-ccChhhhCCCCCC--EEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCCC-
Confidence 99977666 6888777777775 45677888888888766 688899999999888877764 35788888888872
Q ss_pred cccccccccCCCCCCcCEEEEcccCCccccccCcccccccCCCCccEEEecCCCCCCcC
Q 047598 975 MYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKKLKKL 1033 (1112)
Q Consensus 975 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L~~l 1033 (1112)
+ ...|..+..+++|+.|+|++|.. +..+|... ...++|+.+++++|.+|+.+
T Consensus 858 -i-~~iP~si~~l~~L~~L~L~~C~~--L~~l~~~~---~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 858 -I-EEVPWWIEKFSNLSFLDMNGCNN--LQRVSLNI---SKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred -C-ccChHHHhcCCCCCEEECCCCCC--cCccCccc---ccccCCCeeecCCCcccccc
Confidence 2 23566678888888888888754 44555432 12356667777777766544
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=9.7e-26 Score=230.54 Aligned_cols=227 Identities=22% Similarity=0.178 Sum_probs=184.0
Q ss_pred hhhhccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEccccccccccc
Q 047598 553 FEVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE 632 (1112)
Q Consensus 553 ~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~ 632 (1112)
+.++..+..+.++....+. ....+........|+.|+.++|.+..+|++++.+..|..|+..+|++..+|+
T Consensus 84 p~aig~l~~l~~l~vs~n~---------ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~ 154 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNK---------LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPE 154 (565)
T ss_pred CHHHHHHHHHHHhhcccch---------HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCch
Confidence 4555666666666665543 2223334667788999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCcccccccc
Q 047598 633 STNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLK 712 (1112)
Q Consensus 633 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~ 712 (1112)
++.++..|..|++.+| .+..+|+...+++.|++||...|- ++.+|+.++.|.+|..|++..+.+...| .+..+..|+
T Consensus 155 ~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~ 231 (565)
T KOG0472|consen 155 DMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLK 231 (565)
T ss_pred HHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHH
Confidence 9999999999999998 788888887779999999998887 8999999999999999999999988875 788888888
Q ss_pred ccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCC
Q 047598 713 FLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARF 792 (1112)
Q Consensus 713 ~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~ 792 (1112)
++. ...+.+.........++++|..|+++.+.. ....+.+..+.+|..|++++|.+..+
T Consensus 232 Elh--------~g~N~i~~lpae~~~~L~~l~vLDLRdNkl-------------ke~Pde~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 232 ELH--------VGENQIEMLPAEHLKHLNSLLVLDLRDNKL-------------KEVPDEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred HHH--------hcccHHHhhHHHHhcccccceeeecccccc-------------ccCchHHHHhhhhhhhcccCCccccC
Confidence 775 223333333444456889999999998864 23334445577899999999999999
Q ss_pred CCccCCCCCCceeEEEEcCcCCC
Q 047598 793 PSWLGDPLFSKMEVLKLENCWNC 815 (1112)
Q Consensus 793 p~~~~~~~l~~L~~L~L~~~~~~ 815 (1112)
|..+++ + .|+.|-+.+|++-
T Consensus 291 p~sLgn--l-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 291 PYSLGN--L-HLKFLALEGNPLR 310 (565)
T ss_pred Cccccc--c-eeeehhhcCCchH
Confidence 999987 6 8999999999753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-22 Score=229.13 Aligned_cols=382 Identities=19% Similarity=0.235 Sum_probs=226.1
Q ss_pred CCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCC
Q 047598 559 TENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLL 638 (1112)
Q Consensus 559 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~ 638 (1112)
.-+|++|.+.+++. .. ++..+..+..|+.|+++.|.|.++|.++.++.+|++|+|.+|.+..+|.++..++
T Consensus 44 ~v~L~~l~lsnn~~--------~~-fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lk 114 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQI--------SS-FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELK 114 (1081)
T ss_pred eeeeEEeecccccc--------cc-CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhh
Confidence 33477777776641 11 2223566778889999999998888888889999999999999889999999999
Q ss_pred CCcEEeecCCCCCcccCccccCCccccEEeecCCCccccC-------------------CCCCCCCCCCCccCeeeeccC
Q 047598 639 NLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREM-------------------PLGMKELKNLRTLSNFIVGKG 699 (1112)
Q Consensus 639 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~l-------------------p~~i~~l~~L~~L~~~~~~~~ 699 (1112)
+|++||+++| .....|..+..++.+..+..++|..+..+ +.++..+++ .|++..+...
T Consensus 115 nl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~ 191 (1081)
T KOG0618|consen 115 NLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME 191 (1081)
T ss_pred cccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh
Confidence 9999999987 67777877777777777777776323332 222333332 2333333222
Q ss_pred CcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCC
Q 047598 700 EAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCI 779 (1112)
Q Consensus 700 ~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L 779 (1112)
. ..+..+.+|+.+.. ..+.+ ...-..-++|+.|+...|.. ..+..-..+.++
T Consensus 192 -~-~dls~~~~l~~l~c--------~rn~l----s~l~~~g~~l~~L~a~~n~l--------------~~~~~~p~p~nl 243 (1081)
T KOG0618|consen 192 -V-LDLSNLANLEVLHC--------ERNQL----SELEISGPSLTALYADHNPL--------------TTLDVHPVPLNL 243 (1081)
T ss_pred -h-hhhhhccchhhhhh--------hhccc----ceEEecCcchheeeeccCcc--------------eeeccccccccc
Confidence 0 12222222222210 00000 00001113444444444432 122223346789
Q ss_pred ceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceecCccccCCCCcccCcccce
Q 047598 780 KNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEI 859 (1112)
Q Consensus 780 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~ 859 (1112)
+.++++.+....+|+|+.. +.+|+.|+..+|.++..+-.+....+|+.|.+..| .++.+|....+ +.+|++
T Consensus 244 ~~~dis~n~l~~lp~wi~~--~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~------~~sL~t 314 (1081)
T KOG0618|consen 244 QYLDISHNNLSNLPEWIGA--CANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEG------LKSLRT 314 (1081)
T ss_pred eeeecchhhhhcchHHHHh--cccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccc------cceeee
Confidence 9999999999999999987 89999999998876432223444445555555443 23444332222 444444
Q ss_pred eecCCCCccccccc-----------------ccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEE
Q 047598 860 LSFENLPEWEYWDT-----------------NIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVI 922 (1112)
Q Consensus 860 L~l~~~~~l~~~~~-----------------~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~ 922 (1112)
|++... +|..+.. +.........-..++.|+.|++.+ |.|++...+.+-+...|++++|+.
T Consensus 315 LdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 315 LDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred eeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhhccccceeeeeecc
Confidence 444431 0000000 011111111224567788888888 788776666666777777777766
Q ss_pred eccCCcccCcc-cCCCCCCcCEEEEecCCCCcccCCC-CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccC
Q 047598 923 ANCEKLEALPN-DMHRLNFLEHLRIGQCPSILSFPEE-GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCH 999 (1112)
Q Consensus 923 ~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 999 (1112)
|.+. ++|. .+.+++.|++|+||+| .++.+|.. ..+..|++|...+|. . ...| .+..++.|+.+|++.|.
T Consensus 393 NrL~---~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~--l-~~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 393 NRLN---SFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQ--L-LSFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred cccc---cCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCc--e-eech-hhhhcCcceEEecccch
Confidence 6543 3443 3567777888888888 56666654 567777777777772 2 1233 56777888888888765
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=2.7e-14 Score=169.01 Aligned_cols=259 Identities=20% Similarity=0.144 Sum_probs=157.7
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecC
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKG 671 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 671 (1112)
..-.+|+|+++.++.+|..+. .+|+.|++++|.++.+|.. +++|++|+|++| .+..+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 345678999999988988775 3899999999999988863 578999999998 77788853 46788899988
Q ss_pred CCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeC
Q 047598 672 ANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWG 751 (1112)
Q Consensus 672 ~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 751 (1112)
|. +..+|... ++|+.|++.+|.....|.. .++|+.|+++.|
T Consensus 272 N~-L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~-----------------------------------p~~L~~LdLS~N 312 (788)
T PRK15387 272 NP-LTHLPALP---SGLCKLWIFGNQLTSLPVL-----------------------------------PPGLQELSVSDN 312 (788)
T ss_pred Cc-hhhhhhch---hhcCEEECcCCcccccccc-----------------------------------ccccceeECCCC
Confidence 87 66666532 4455565555433322110 134666666555
Q ss_pred CCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEE
Q 047598 752 SQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELT 831 (1112)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 831 (1112)
... .+.. .+.+|+.|.+.+|....+|.. ..+|+.|+|++|.+.. +|.+ .++|+.|+
T Consensus 313 ~L~--------------~Lp~--lp~~L~~L~Ls~N~L~~LP~l-----p~~Lq~LdLS~N~Ls~-LP~l--p~~L~~L~ 368 (788)
T PRK15387 313 QLA--------------SLPA--LPSELCKLWAYNNQLTSLPTL-----PSGLQELSVSDNQLAS-LPTL--PSELYKLW 368 (788)
T ss_pred ccc--------------cCCC--CcccccccccccCcccccccc-----ccccceEecCCCccCC-CCCC--Ccccceeh
Confidence 431 0111 134566677777766666642 3467788888776543 4432 35677777
Q ss_pred ecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCC
Q 047598 832 IQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPS 911 (1112)
Q Consensus 832 L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~ 911 (1112)
+++|. +..+|.. ..+|+.|++++. .... .+ ..+++|+.|++++ |+++ .+|..+.+
T Consensus 369 Ls~N~-L~~LP~l---------~~~L~~LdLs~N---------~Lt~-LP---~l~s~L~~LdLS~-N~Ls-sIP~l~~~ 423 (788)
T PRK15387 369 AYNNR-LTSLPAL---------PSGLKELIVSGN---------RLTS-LP---VLPSELKELMVSG-NRLT-SLPMLPSG 423 (788)
T ss_pred hhccc-cccCccc---------ccccceEEecCC---------cccC-CC---CcccCCCEEEccC-CcCC-CCCcchhh
Confidence 77643 4444321 345677777652 1111 11 1235677777777 5676 46654444
Q ss_pred cceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCc
Q 047598 912 LETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSIL 953 (1112)
Q Consensus 912 L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~ 953 (1112)
|..|. +++ +.+..+|..+..+++|+.|+|++|+...
T Consensus 424 L~~L~-----Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 424 LLSLS-----VYR-NQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hhhhh-----hcc-CcccccChHHhhccCCCeEECCCCCCCc
Confidence 44332 222 2344667667777777777777776543
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=2.1e-16 Score=162.69 Aligned_cols=394 Identities=18% Similarity=0.218 Sum_probs=192.1
Q ss_pred cEEEeccccccccc-ccccCCCcCcEEEccccccccc-cccccCCCCCcEEeecCCCCCcccCcc-ccCCccccEEeecC
Q 047598 595 RVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTL-PESTNSLLNLEILILRNCSRLKKLPSK-MRNLINLHHLDIKG 671 (1112)
Q Consensus 595 ~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~ 671 (1112)
..++|..|.|+.+| .+|+.+++||.||||+|.|+.| |..|..|.+|-.|-+.++..++.+|+. |++|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 34566666666666 3466666666666666666655 455666666666655553466666653 55666666666655
Q ss_pred CCccccCCCC-CCCCCCCCccCeeeeccCCccc-CccccccccccCC----eeEEecccCCCChhhhhhccccCccccCc
Q 047598 672 ANLLREMPLG-MKELKNLRTLSNFIVGKGEAIS-GLEDLKNLKFLGG----ELCISGLENVNDSQKVREATLCEKENLKT 745 (1112)
Q Consensus 672 ~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~-~l~~l~~L~~L~~----~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 745 (1112)
|. +..++.. +..|++|..|.++.+....+.. .+..+..++.+.. ..+..++..........+..++.......
T Consensus 150 n~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 150 NH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 55 3333332 5566666666666555444322 3333333333210 01111111111111111111222222221
Q ss_pred eEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCC
Q 047598 746 LSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLL 824 (1112)
Q Consensus 746 L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l 824 (1112)
..+.+...... + .......+... ...+....+.....|...+. .+++|++|+|++|++...-+ ++..+
T Consensus 229 ~rl~~~Ri~q~-~-------a~kf~c~~esl--~s~~~~~d~~d~~cP~~cf~-~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 229 YRLYYKRINQE-D-------ARKFLCSLESL--PSRLSSEDFPDSICPAKCFK-KLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred HHHHHHHhccc-c-------hhhhhhhHHhH--HHhhccccCcCCcChHHHHh-hcccceEeccCCCccchhhhhhhcch
Confidence 11111110000 0 00000000000 01112222222223332221 38899999999988876555 78888
Q ss_pred CCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCC---
Q 047598 825 SSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKL--- 901 (1112)
Q Consensus 825 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L--- 901 (1112)
..++.|.|..| .++.+....+.+ +..|+.|++.+ |......+..+....+|.+|++-..|-.
T Consensus 298 a~l~eL~L~~N-~l~~v~~~~f~~-----ls~L~tL~L~~---------N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 298 AELQELYLTRN-KLEFVSSGMFQG-----LSGLKTLSLYD---------NQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred hhhhhhhcCcc-hHHHHHHHhhhc-----cccceeeeecC---------CeeEEEecccccccceeeeeehccCcccCcc
Confidence 89999999885 455554443332 77888888877 3444444555566677777777652211
Q ss_pred --------------CCCCCC-CCCCcceeEEeEEEEec--cCCcccC-----cccCCCCCCcCEEEEecCCCCcccCCCC
Q 047598 902 --------------SGKLPE-LLPSLETLVVATFVIAN--CEKLEAL-----PNDMHRLNFLEHLRIGQCPSILSFPEEG 959 (1112)
Q Consensus 902 --------------~~~~p~-~~~~L~~L~~~~L~~~~--~~~l~~l-----p~~l~~l~~L~~L~L~~~~~l~~~~~~~ 959 (1112)
.|..|. ....++.+.+.++.+.. |..-++. +..-..++.+.+..=..|..++.+|. +
T Consensus 363 ~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~-~ 441 (498)
T KOG4237|consen 363 RLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPR-G 441 (498)
T ss_pred chHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCC-C
Confidence 112222 23344555554444332 2111100 11112344444433333444555554 3
Q ss_pred CCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCcccccccCCCCccEEEecCCCCCCcCCCCCCC
Q 047598 960 FPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKKLKKLSLMTSL 1039 (1112)
Q Consensus 960 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L~~l~~l~~L 1039 (1112)
.+..-..|++.+| .++.. +.. .+.+| .+++++|+ +..+.+.. +++++.|
T Consensus 442 iP~d~telyl~gn--~~~~v-p~~--~~~~l-~~dls~n~---i~~Lsn~t----------------------f~n~tql 490 (498)
T KOG4237|consen 442 IPVDVTELYLDGN--AITSV-PDE--LLRSL-LLDLSNNR---ISSLSNYT----------------------FSNMTQL 490 (498)
T ss_pred CCchhHHHhcccc--hhccc-CHH--HHhhh-hcccccCc---eehhhccc----------------------ccchhhh
Confidence 4556677778877 33222 222 46667 78888876 44444332 3356777
Q ss_pred CeEEeecC
Q 047598 1040 EYLWIKNC 1047 (1112)
Q Consensus 1040 ~~L~ls~c 1047 (1112)
.+|.|++|
T Consensus 491 ~tlilsyn 498 (498)
T KOG4237|consen 491 STLILSYN 498 (498)
T ss_pred heeEEecC
Confidence 78888765
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=3.7e-13 Score=159.52 Aligned_cols=235 Identities=26% Similarity=0.319 Sum_probs=170.0
Q ss_pred CCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceecCccccCCCCcccCcc
Q 047598 777 KCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQS 856 (1112)
Q Consensus 777 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 856 (1112)
.+|+.|.+.+|....+|.. +++|++|+|++|.+. .+|.+ .++|+.|++++|. +..++.. +.+
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l-----p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L~~Lp~l---------p~~ 283 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL-----PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-LTHLPAL---------PSG 283 (788)
T ss_pred cCCCEEEccCCcCCCCCCC-----CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-hhhhhhc---------hhh
Confidence 4789999999998888852 578999999998765 45543 4789999999874 5555431 467
Q ss_pred cceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCC
Q 047598 857 LEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMH 936 (1112)
Q Consensus 857 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~ 936 (1112)
|+.|+++++ .+.. .+ ..+|+|+.|++++ |+++ .+|..+.+|..|. +.+ +.+..+|.
T Consensus 284 L~~L~Ls~N-~Lt~---------LP---~~p~~L~~LdLS~-N~L~-~Lp~lp~~L~~L~-----Ls~-N~L~~LP~--- 339 (788)
T PRK15387 284 LCKLWIFGN-QLTS---------LP---VLPPGLQELSVSD-NQLA-SLPALPSELCKLW-----AYN-NQLTSLPT--- 339 (788)
T ss_pred cCEEECcCC-cccc---------cc---ccccccceeECCC-Cccc-cCCCCcccccccc-----ccc-Cccccccc---
Confidence 888888872 1211 11 2357899999999 7898 5776666666554 233 23445553
Q ss_pred CCCCcCEEEEecCCCCcccCCCCCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCcccccccCC
Q 047598 937 RLNFLEHLRIGQCPSILSFPEEGFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLP 1016 (1112)
Q Consensus 937 ~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~ 1016 (1112)
..++|+.|+|++| .+..+|. .+++|+.|++++|. +.. +|.. ..+|+.|++++|. +..+|. .|
T Consensus 340 lp~~Lq~LdLS~N-~Ls~LP~--lp~~L~~L~Ls~N~--L~~-LP~l---~~~L~~LdLs~N~---Lt~LP~------l~ 401 (788)
T PRK15387 340 LPSGLQELSVSDN-QLASLPT--LPSELYKLWAYNNR--LTS-LPAL---PSGLKELIVSGNR---LTSLPV------LP 401 (788)
T ss_pred cccccceEecCCC-ccCCCCC--CCcccceehhhccc--ccc-Cccc---ccccceEEecCCc---ccCCCC------cc
Confidence 2257999999998 5556664 46789999999883 322 3322 3579999999987 666664 35
Q ss_pred CCccEEEecCCCCCCcCCC-CCCCCeEEeecCCCCCcCCC-CCCCCCccEEEEccCcch
Q 047598 1017 SSLTHLTIAGFKKLKKLSL-MTSLEYLWIKNCPNLASFPE-LGLPSSLTQLYIDHCPLV 1073 (1112)
Q Consensus 1017 ~sL~~L~l~~~~~L~~l~~-l~~L~~L~ls~c~~l~~lp~-~~~~~~L~~L~l~~c~~l 1073 (1112)
++|+.|+++++ .++.++. +.+|+.|++++| .++.+|. +..+++|+.|++++|+.-
T Consensus 402 s~L~~LdLS~N-~LssIP~l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 402 SELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cCCCEEEccCC-cCCCCCcchhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCC
Confidence 78999999985 4777764 357999999999 4668885 778899999999999863
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=9.4e-16 Score=139.22 Aligned_cols=152 Identities=24% Similarity=0.268 Sum_probs=128.3
Q ss_pred hhhccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEcccccccccccc
Q 047598 554 EVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPES 633 (1112)
Q Consensus 554 ~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~ 633 (1112)
..+..+++...|.++++. ..+.+.-+..+.+|++|++++|+++.+|.+++.+++||.|+++-|++..+|..
T Consensus 27 ~gLf~~s~ITrLtLSHNK---------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNK---------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred ccccchhhhhhhhcccCc---------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc
Confidence 344566666667776654 22233347789999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEeecCCCCC-cccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCcccccccc
Q 047598 634 TNSLLNLEILILRNCSRL-KKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLK 712 (1112)
Q Consensus 634 i~~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~ 712 (1112)
|+.++-|++|||.+|..- ..+|..|..++-|+.|+|+.|. ...+|..+++|++||.|.+..+...+.|..++.+..|+
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLR 176 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHH
Confidence 999999999999997322 4689999999999999999998 78899999999999999999988888888888888887
Q ss_pred ccC
Q 047598 713 FLG 715 (1112)
Q Consensus 713 ~L~ 715 (1112)
+|.
T Consensus 177 elh 179 (264)
T KOG0617|consen 177 ELH 179 (264)
T ss_pred HHh
Confidence 764
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=1.8e-13 Score=163.48 Aligned_cols=94 Identities=17% Similarity=0.301 Sum_probs=65.6
Q ss_pred cccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCC
Q 047598 593 RLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGA 672 (1112)
Q Consensus 593 ~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~ 672 (1112)
+..+|+++++.++.+|..+. ++|+.|+|++|.++.+|..+. .+|++|++++| .+..+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 45678888887777776654 478888888888888877654 47888888887 6777776553 46788888887
Q ss_pred CccccCCCCCCCCCCCCccCeeee
Q 047598 673 NLLREMPLGMKELKNLRTLSNFIV 696 (1112)
Q Consensus 673 ~~l~~lp~~i~~l~~L~~L~~~~~ 696 (1112)
. +..+|..+. ++|+.|+++.|
T Consensus 252 ~-L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 252 R-ITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred c-cCcCChhHh--CCCCEEECcCC
Confidence 7 556766543 35666655444
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=3.1e-15 Score=135.88 Aligned_cols=116 Identities=26% Similarity=0.262 Sum_probs=79.6
Q ss_pred cCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEee
Q 047598 590 KFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDI 669 (1112)
Q Consensus 590 ~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 669 (1112)
.+.++..|-|++|+++.+|..+..+.+|+.|++++|+|.++|.+++.|+.|+.|++.-| .+..+|.+|+.++-|+.|||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 34566667777888777777777788888888888888888888888888888887776 67777777888888888877
Q ss_pred cCCCcc-ccCCCCCCCCCCCCccCeeeeccCCcccCcc
Q 047598 670 KGANLL-REMPLGMKELKNLRTLSNFIVGKGEAISGLE 706 (1112)
Q Consensus 670 ~~~~~l-~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~ 706 (1112)
.+|+.. ..+|..+..|+.|+.|++..+.....|..++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg 147 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVG 147 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhh
Confidence 777632 2355555555555555555444433333333
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=3.1e-15 Score=154.17 Aligned_cols=383 Identities=17% Similarity=0.162 Sum_probs=213.6
Q ss_pred ccccccccccCCcccEEEecccccccc-cccccCCCcCcEEEccc-ccccccccc-ccCCCCCcEEeecCCCCCcccCcc
Q 047598 581 GIVLSDLLPKFKRLRVLSLQRYYIGEL-LVSFEDLKLLRYLNLAD-TMIRTLPES-TNSLLNLEILILRNCSRLKKLPSK 657 (1112)
Q Consensus 581 ~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~-n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~ 657 (1112)
..+|+..|+.+++||.|||++|.|+.| |++|.++..|-.|-+-+ |+|+.+|+. |++|..|+-|.+.-|.........
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 467888999999999999999999887 68899999988877765 999999986 889999999999988544445567
Q ss_pred ccCCccccEEeecCCCccccCCC-CCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCC-------h
Q 047598 658 MRNLINLHHLDIKGANLLREMPL-GMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVND-------S 729 (1112)
Q Consensus 658 i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~-------~ 729 (1112)
+..|++|..|.+..|. ...++. .+..+..++++.+..+..... ..+..+..-.... .....+..-+.. .
T Consensus 160 l~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icd-CnL~wla~~~a~~-~ietsgarc~~p~rl~~~Ri 236 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICD-CNLPWLADDLAMN-PIETSGARCVSPYRLYYKRI 236 (498)
T ss_pred HHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccc-cccchhhhHHhhc-hhhcccceecchHHHHHHHh
Confidence 8999999999999988 777887 488899999998766552211 1111111000000 000000000000 0
Q ss_pred hhhhhccccCccccCce--EEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCC-CCccCCCCCCceeE
Q 047598 730 QKVREATLCEKENLKTL--SLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARF-PSWLGDPLFSKMEV 806 (1112)
Q Consensus 730 ~~~~~~~l~~~~~L~~L--~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~ 806 (1112)
.......+. .+++.+ .+..... ++ ....-..+..+++|++|++++|.+..+ +.|+.. ...+++
T Consensus 237 ~q~~a~kf~--c~~esl~s~~~~~d~----~d------~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~--~a~l~e 302 (498)
T KOG4237|consen 237 NQEDARKFL--CSLESLPSRLSSEDF----PD------SICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG--AAELQE 302 (498)
T ss_pred cccchhhhh--hhHHhHHHhhccccC----cC------CcChHHHHhhcccceEeccCCCccchhhhhhhcc--hhhhhh
Confidence 000000000 011111 0000000 00 000011144566777777777777666 445554 677777
Q ss_pred EEEcCcCCCCCCC-CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCC--------cccccccccCC
Q 047598 807 LKLENCWNCTSLP-SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLP--------EWEYWDTNIKG 877 (1112)
Q Consensus 807 L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~--------~l~~~~~~~~~ 877 (1112)
|.|..|++...-. .+.++.+|+.|+|.+|......|..|.. ..+|..|.+-..| .|.+|-.....
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~------~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~ 376 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT------LFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSV 376 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc------cceeeeeehccCcccCccchHHHHHHHhhCCC
Confidence 8887776543222 5667777888888876433333332222 4556666554322 12223111110
Q ss_pred CCcCCcccCCCccceEeEecC--CCCCCCCC---------CCCCCcceeEEeEEEEecc--CCcccCcccCCCCCCcCEE
Q 047598 878 NDHADRVEIFPRLHKLSIMEC--PKLSGKLP---------ELLPSLETLVVATFVIANC--EKLEALPNDMHRLNFLEHL 944 (1112)
Q Consensus 878 ~~~~~~~~~~p~L~~L~l~~c--~~L~~~~p---------~~~~~L~~L~~~~L~~~~~--~~l~~lp~~l~~l~~L~~L 944 (1112)
... ..-.....++.+.+++. .+.+...| ...+..+.+.. +..| ..++.+|..+- ..-.+|
T Consensus 377 ~~~-~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~t----VvRcSnk~lk~lp~~iP--~d~tel 449 (498)
T KOG4237|consen 377 VGN-PRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDT----VVRCSNKLLKLLPRGIP--VDVTEL 449 (498)
T ss_pred CCC-CCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhh----hHhhcccchhhcCCCCC--chhHHH
Confidence 000 11122234455555441 11111111 12222333321 1122 33445555432 235677
Q ss_pred EEecCCCCcccCCCCCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEccc
Q 047598 945 RIGQCPSILSFPEEGFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGC 998 (1112)
Q Consensus 945 ~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 998 (1112)
.+.+| .++.+|.. .+.+| .+++++| .+.......|.++++|.+|.|++|
T Consensus 450 yl~gn-~~~~vp~~-~~~~l-~~dls~n--~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 450 YLDGN-AITSVPDE-LLRSL-LLDLSNN--RISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hcccc-hhcccCHH-HHhhh-hcccccC--ceehhhcccccchhhhheeEEecC
Confidence 88888 45566655 56677 8888888 444455567889999999999874
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=1.1e-12 Score=156.89 Aligned_cols=96 Identities=18% Similarity=0.295 Sum_probs=76.4
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecC
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKG 671 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 671 (1112)
+.|+.|+|++|.+..+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++| .+..+|..+. .+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence 468899999999999987664 589999999999999987664 47999999998 6778888664 5899999998
Q ss_pred CCccccCCCCCCCCCCCCccCeeeec
Q 047598 672 ANLLREMPLGMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 672 ~~~l~~lp~~i~~l~~L~~L~~~~~~ 697 (1112)
|. +..+|..+. .+|+.|++++|.
T Consensus 272 N~-L~~LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 272 NK-ISCLPENLP--EELRYLSVYDNS 294 (754)
T ss_pred Cc-cCccccccC--CCCcEEECCCCc
Confidence 87 667887654 467777766543
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=9.3e-11 Score=150.81 Aligned_cols=273 Identities=13% Similarity=0.157 Sum_probs=172.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC-CCHHHHHHHHHHHhcCCCCC------------
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV-FDVLSISKALLESITRKPCH------------ 271 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~------------ 271 (1112)
...+++.|+|++|.||||++.++... ++.++|+++... .+...+...++..+......
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~---------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~ 100 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAG---------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKR 100 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHh---------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccC
Confidence 35689999999999999999998853 226899999744 45566777777777422111
Q ss_pred -CCChHHHHHHHHHHhC--CCcEEEEEeCCCCCChhhHHHHHhccc-CCCCCcEEEEEcCChhhhh--hc-CCCceeeCC
Q 047598 272 -LNTLNEVQVDLKTAVD--GKRFLLVLDDVWNEDYSLWVDLKAPLL-AAAPNSKMIITTRHSHVAS--TM-GPIKHYNLK 344 (1112)
Q Consensus 272 -~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~iivTTR~~~v~~--~~-~~~~~~~l~ 344 (1112)
..+.......+...+. +.+++|||||+...+.....+....+. ...++.++|||||...-.. .. .......+.
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~ 180 (903)
T PRK04841 101 QYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIG 180 (903)
T ss_pred CcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecC
Confidence 0122223333333332 679999999997654334343443433 3345678889999742111 11 112344555
Q ss_pred ----CCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCCC--HHHHHHHHhccccCCCC-
Q 047598 345 ----RLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTTR--CDLWEDILDSKIWDLPQ- 417 (1112)
Q Consensus 345 ----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~--~~~w~~~l~~~~~~~~~- 417 (1112)
+|+.+|+.++|.......- ..+...+|.+.|+|.|+++..++..+.... .... . +.+..
T Consensus 181 ~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~---~----~~~~~~ 246 (903)
T PRK04841 181 SQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSARQNNSSLHDS---A----RRLAGI 246 (903)
T ss_pred HHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh---h----HhhcCC
Confidence 9999999999987543211 123467899999999999999987775442 1111 1 11111
Q ss_pred -CCCchHHHHH-HhcCCchHHHHHHhHhhcCCCCceechHHHHHHHHhCCcccccCCCchHHHHHHHHHHHHhhCCcccc
Q 047598 418 -QSGILPVLRL-SYHHLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGSQCFHDLVSRSIFQP 495 (1112)
Q Consensus 418 -~~~i~~~l~~-sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 495 (1112)
...+...+.- .|+.||++.++.++..|+++ .++.+ +... +.. .+.+...+++|.+++++..
T Consensus 247 ~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~~-----l~~--------~~~~~~~L~~l~~~~l~~~ 309 (903)
T PRK04841 247 NASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIVR-----VTG--------EENGQMRLEELERQGLFIQ 309 (903)
T ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHHH-----HcC--------CCcHHHHHHHHHHCCCeeE
Confidence 1235554433 48899999999999999986 33332 2221 111 1124667999999999653
Q ss_pred -ccCCCccceechhHHHHHHHhh
Q 047598 496 -SSRNSCKFVMHDLVHDLAQLVS 517 (1112)
Q Consensus 496 -~~~~~~~~~~H~lv~~~~~~~~ 517 (1112)
.+.+...|+.|++++++.+...
T Consensus 310 ~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 310 RMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred eecCCCCEEehhHHHHHHHHHHH
Confidence 3333457889999999998765
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.31 E-value=1e-12 Score=159.61 Aligned_cols=124 Identities=32% Similarity=0.403 Sum_probs=97.2
Q ss_pred cCCcccEEEecccc--ccccccc-ccCCCcCcEEEcccc-ccccccccccCCCCCcEEeecCCCCCcccCccccCCcccc
Q 047598 590 KFKRLRVLSLQRYY--IGELLVS-FEDLKLLRYLNLADT-MIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLH 665 (1112)
Q Consensus 590 ~~~~L~~L~L~~~~--~~~lp~~-~~~l~~Lr~L~Ls~n-~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 665 (1112)
.++.|++|-+.+|. +..++.. |..++.||+|||++| .+.++|++|+.|.+|++|+|+++ .+..+|.++.+|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 44579999998885 6666543 788999999999976 57799999999999999999996 8999999999999999
Q ss_pred EEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCcccccccccc
Q 047598 666 HLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFL 714 (1112)
Q Consensus 666 ~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L 714 (1112)
+|++..+..+..+|..+..|.+|++|.+...........+.++.+|+.|
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 9999998866666665667999999988776522222344444444444
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=1.2e-09 Score=125.35 Aligned_cols=300 Identities=11% Similarity=0.055 Sum_probs=178.3
Q ss_pred CCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHH
Q 047598 176 TERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVL 255 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 255 (1112)
.+..++||+++.++|...+... . .+.....+.|+|++|+|||++++.++++.... ...-..+++.+....+..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~-~---~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~---~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPA-L---RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI---AVKVVYVYINCQIDRTRY 100 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHH-h---CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh---cCCcEEEEEECCcCCCHH
Confidence 4457999999999999988541 1 11233457899999999999999999876433 222356677777777788
Q ss_pred HHHHHHHHHhcCCC--CCCCChHHHHHHHHHHhC--CCcEEEEEeCCCCCC----hhhHHHHHhcccCCCCCcE--EEEE
Q 047598 256 SISKALLESITRKP--CHLNTLNEVQVDLKTAVD--GKRFLLVLDDVWNED----YSLWVDLKAPLLAAAPNSK--MIIT 325 (1112)
Q Consensus 256 ~~~~~il~~l~~~~--~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iivT 325 (1112)
.++..+++++.... ....+.++....+.+.+. +++.+||||+++... .+.+..+...+.. ..+++ +|.+
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i 179 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGI 179 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEE
Confidence 89999999987632 122345666677777664 456899999997532 1223333322221 23333 5666
Q ss_pred cCChhhhhhcC-------CCceeeCCCCChHhHHHHHHHhHhCC--CCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhh
Q 047598 326 TRHSHVASTMG-------PIKHYNLKRLLDEDCWSIFIKHAYES--RSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLL 396 (1112)
Q Consensus 326 TR~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 396 (1112)
+....+..... ....+.+.+++.++..+++..++... ....++...+.+++......|..+.|+.++-.+.
T Consensus 180 ~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 180 SSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred ECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 66544332211 12467899999999999998876322 1112333444444544444566888877764322
Q ss_pred --c---C--C-CHHHHHHHHhccccCCCCCCCchHHHHHHhcCCchHHHHHHhHhhcCCC--CceechHHHHHH--HHhC
Q 047598 397 --R---T--T-RCDLWEDILDSKIWDLPQQSGILPVLRLSYHHLPSYLKRCFAYCAIFPK--DYEFYEKELVFL--WIGG 464 (1112)
Q Consensus 397 --~---~--~-~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~--~~~i~~~~li~~--Wia~ 464 (1112)
+ + . +.+.+..+.+.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 1 1 1 556666555532 1223445688999998877766553321 123444444322 1221
Q ss_pred CcccccCCCchHHHHHHHHHHHHhhCCccccc
Q 047598 465 GIIRQSKNNEQLEDLGSQCFHDLVSRSIFQPS 496 (1112)
Q Consensus 465 g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 496 (1112)
.+-.. ..-......|+.+|...++|...
T Consensus 331 ~~~~~----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 331 ELGYE----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HcCCC----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 11000 00123345688888888888754
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=1.7e-09 Score=117.10 Aligned_cols=182 Identities=20% Similarity=0.174 Sum_probs=116.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHH---
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLK--- 283 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~--- 283 (1112)
..++.|+|++|+||||+++.+++..... .. ..+|+ +....+..+++..++..++..... .........+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~----~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE----RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC----Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHH
Confidence 4589999999999999999999876421 11 22333 333456778889999888765432 22222233332
Q ss_pred -H-HhCCCcEEEEEeCCCCCChhhHHHHHhcccC---CCCCcEEEEEcCChhhhhhcC----------CCceeeCCCCCh
Q 047598 284 -T-AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLA---AAPNSKMIITTRHSHVASTMG----------PIKHYNLKRLLD 348 (1112)
Q Consensus 284 -~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTTR~~~v~~~~~----------~~~~~~l~~L~~ 348 (1112)
. ...+++.+||+||+|......++.+...... ......|++|... ....... ....+.+.+++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 2 2367889999999998766666665432211 1122344555543 2221111 134678999999
Q ss_pred HhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhh
Q 047598 349 EDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLL 396 (1112)
Q Consensus 349 ~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 396 (1112)
+|..+++...+.............+..+.|++.++|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999987765433211222345678999999999999999988766
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.09 E-value=3.6e-08 Score=112.02 Aligned_cols=303 Identities=14% Similarity=0.052 Sum_probs=171.5
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccC-CCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKD-FKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++||++++++|..++... . .+.....+.|+|++|+|||++++.+++........ +.--..+|+.+....+...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~-~---~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPI-L---RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHH-H---cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 37899999999999998641 1 11234568999999999999999999865321100 0002456788877777888
Q ss_pred HHHHHHHHhc---CCCC-CCCChHHHHHHHHHHh--CCCcEEEEEeCCCCCC---hhhHHHHHhcc-cCCC--CCcEEEE
Q 047598 257 ISKALLESIT---RKPC-HLNTLNEVQVDLKTAV--DGKRFLLVLDDVWNED---YSLWVDLKAPL-LAAA--PNSKMII 324 (1112)
Q Consensus 257 ~~~~il~~l~---~~~~-~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~iiv 324 (1112)
++..+++++. .... ...+..+....+.+.+ .+++++||||+++.-. ......+.... .... ....+|.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 9999999984 2221 2223445555565555 3567899999997541 11122222211 1111 2234555
Q ss_pred EcCChhhhhhcC-------CCceeeCCCCChHhHHHHHHHhHhCC-CCCCCchhHHHHHHHHHhhcCCchH-HHHHHhhh
Q 047598 325 TTRHSHVASTMG-------PIKHYNLKRLLDEDCWSIFIKHAYES-RSLKAHQISELFRKKVVGKCGGLPL-AAKSLGGL 395 (1112)
Q Consensus 325 TTR~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~ 395 (1112)
+|........+. ....+.+.+.+.++..+++..++-.. ....-++...+...+++..+.|.|- |+.++-.+
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 555443321111 12468899999999999998886421 1111122222344556667778774 33332221
Q ss_pred h----c-C--C-CHHHHHHHHhccccCCCCCCCchHHHHHHhcCCchHHHHHHhHhhcCC--CCceechHHHHHHHH--h
Q 047598 396 L----R-T--T-RCDLWEDILDSKIWDLPQQSGILPVLRLSYHHLPSYLKRCFAYCAIFP--KDYEFYEKELVFLWI--G 463 (1112)
Q Consensus 396 l----~-~--~-~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp--~~~~i~~~~li~~Wi--a 463 (1112)
. . + . +.+....+.+.. -.....-++..||.+.|..+..++..- ++..+....+...+- +
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~---------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKI---------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 1 1 1 444444444331 112344567789998887666655221 333455555555331 2
Q ss_pred CCcccccCCCchHHHHHHHHHHHHhhCCcccccc
Q 047598 464 GGIIRQSKNNEQLEDLGSQCFHDLVSRSIFQPSS 497 (1112)
Q Consensus 464 ~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~ 497 (1112)
+.+ .. ....+.....++..|...|+|....
T Consensus 322 ~~~-~~---~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 322 EDI-GV---DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred Hhc-CC---CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 211 10 1122456677889999999987643
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.98 E-value=2.9e-09 Score=113.06 Aligned_cols=195 Identities=19% Similarity=0.253 Sum_probs=100.1
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHH
Q 047598 180 VYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISK 259 (1112)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 259 (1112)
|+||++++++|.+++.. +..+.+.|+|+.|+|||+|++.+.+..... .+ .++|+...+.... ....
T Consensus 1 F~gR~~el~~l~~~l~~--------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~----~~-~~~y~~~~~~~~~-~~~~ 66 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--------GPSQHILLYGPRGSGKTSLLKEFINELKEK----GY-KVVYIDFLEESNE-SSLR 66 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----------SSEEEEEESTTSSHHHHHHHHHHHCT------EE-CCCHHCCTTBSHH-HHHH
T ss_pred CCCHHHHHHHHHHHHHh--------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhc----CC-cEEEEecccchhh-hHHH
Confidence 78999999999998865 234689999999999999999999876322 11 3344444333322 2222
Q ss_pred HH----------HHHhc----CCCC------CCCChHHHHHHHHHHh--CCCcEEEEEeCCCCCC------hhhHHHHHh
Q 047598 260 AL----------LESIT----RKPC------HLNTLNEVQVDLKTAV--DGKRFLLVLDDVWNED------YSLWVDLKA 311 (1112)
Q Consensus 260 ~i----------l~~l~----~~~~------~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~------~~~~~~l~~ 311 (1112)
.+ .+.+. .... ...........+.+.+ .+++++||+||+.... ......+..
T Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~ 146 (234)
T PF01637_consen 67 SFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRS 146 (234)
T ss_dssp HHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHH
Confidence 22 11121 1100 0111122222232222 2445999999996543 111222222
Q ss_pred cccC--CCCCcEEEEEcCChhhhhh--------cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhh
Q 047598 312 PLLA--AAPNSKMIITTRHSHVAST--------MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGK 381 (1112)
Q Consensus 312 ~l~~--~~~gs~iivTTR~~~v~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~ 381 (1112)
.+.. ....-.+|++.....+... .+....+.+++++.+++++++....-.. . .- +.-++..++|...
T Consensus 147 ~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 147 LLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSL 223 (234)
T ss_dssp HHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHH
T ss_pred HHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHH
Confidence 2222 1233344455444433322 2233459999999999999999865433 1 11 1123345899999
Q ss_pred cCCchHHHHH
Q 047598 382 CGGLPLAAKS 391 (1112)
Q Consensus 382 c~glPlai~~ 391 (1112)
+||.|..|..
T Consensus 224 ~gG~P~~l~~ 233 (234)
T PF01637_consen 224 TGGNPRYLQE 233 (234)
T ss_dssp HTT-HHHHHH
T ss_pred hCCCHHHHhc
Confidence 9999988764
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.98 E-value=1.1e-08 Score=113.41 Aligned_cols=279 Identities=16% Similarity=0.144 Sum_probs=146.6
Q ss_pred CCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHH
Q 047598 176 TERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVL 255 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 255 (1112)
.-..|+|++..++.+..++..... .......+.|+|++|+||||+|+.+++..... + .++..+ .....
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~---~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~-----~---~~~~~~-~~~~~ 90 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKK---RGEALDHVLLYGPPGLGKTTLANIIANEMGVN-----I---RITSGP-ALEKP 90 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHh---cCCCCCcEEEECCCCccHHHHHHHHHHHhCCC-----e---EEEecc-cccCh
Confidence 345799999999998877753111 12335578899999999999999999875422 1 111111 11111
Q ss_pred HHHHHHHHHhcCCC----CCCCCh-HHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChh
Q 047598 256 SISKALLESITRKP----CHLNTL-NEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSH 330 (1112)
Q Consensus 256 ~~~~~il~~l~~~~----~~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 330 (1112)
..+..++..+.... ++.... ....+.+...+.+.+..+|+|+..+... +...+ .+.+-|..||+...
T Consensus 91 ~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l---~~~~li~at~~~~~ 162 (328)
T PRK00080 91 GDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDL---PPFTLIGATTRAGL 162 (328)
T ss_pred HHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecC---CCceEEeecCCccc
Confidence 22223333322111 000000 0111223333344444444444322110 00011 12345666666544
Q ss_pred hhhhcC--CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCCCHHHHHHHH
Q 047598 331 VASTMG--PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTTRCDLWEDIL 408 (1112)
Q Consensus 331 v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~l 408 (1112)
+..... ....+.+++++.++..+++.+.+...... ..++....|++.|+|.|-.+..+...+. .|....
T Consensus 163 l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~ 233 (328)
T PRK00080 163 LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK 233 (328)
T ss_pred CCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc
Confidence 433211 12468999999999999999887654322 2234678999999999965544443221 221111
Q ss_pred hccccCCCC--CCCchHHHHHHhcCCchHHHHHHh-HhhcCCCCceechHHHHHHHHhCCcccccCCCchHHHHHHHHHH
Q 047598 409 DSKIWDLPQ--QSGILPVLRLSYHHLPSYLKRCFA-YCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGSQCFH 485 (1112)
Q Consensus 409 ~~~~~~~~~--~~~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~ 485 (1112)
... .... -......+...|..|++..+..+. ....|+.+ .+..+.+.... . .. .+.++..++
T Consensus 234 ~~~--~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g--~~----~~~~~~~~e 298 (328)
T PRK00080 234 GDG--VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G--EE----RDTIEDVYE 298 (328)
T ss_pred CCC--CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C--CC----cchHHHHhh
Confidence 100 0000 112233445667788888777775 66667655 45555554332 1 11 223444455
Q ss_pred -HHhhCCccccccC
Q 047598 486 -DLVSRSIFQPSSR 498 (1112)
Q Consensus 486 -~L~~~~l~~~~~~ 498 (1112)
.|++.+|++...+
T Consensus 299 ~~Li~~~li~~~~~ 312 (328)
T PRK00080 299 PYLIQQGFIQRTPR 312 (328)
T ss_pred HHHHHcCCcccCCc
Confidence 8999999986554
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.96 E-value=9e-08 Score=110.42 Aligned_cols=289 Identities=18% Similarity=0.201 Sum_probs=184.8
Q ss_pred HHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC-CCHHHHHHHHHHHhc
Q 047598 188 ARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV-FDVLSISKALLESIT 266 (1112)
Q Consensus 188 ~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~ 266 (1112)
.++++.|.. ..+.|++.|..++|.|||||+.+..... ..-..+.|.++++. .+...+...++..++
T Consensus 25 ~rL~~~L~~-------~~~~RL~li~APAGfGKttl~aq~~~~~------~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 25 PRLLDRLRR-------ANDYRLILISAPAGFGKTTLLAQWRELA------ADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred HHHHHHHhc-------CCCceEEEEeCCCCCcHHHHHHHHHHhc------CcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 355555643 3568999999999999999999997622 22356899998865 467788888888887
Q ss_pred CCCCC-------------CCChHHHHHHHHHHhC--CCcEEEEEeCCCCCChhhHHH-HHhcccCCCCCcEEEEEcCChh
Q 047598 267 RKPCH-------------LNTLNEVQVDLKTAVD--GKRFLLVLDDVWNEDYSLWVD-LKAPLLAAAPNSKMIITTRHSH 330 (1112)
Q Consensus 267 ~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~iivTTR~~~ 330 (1112)
.-.+. ..+...+...+...+. .++..+||||-.-........ +...+....++-.+|||||...
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 54322 1223334444444443 468999999975433333333 3333344556789999999864
Q ss_pred hhhhcC---CCceeeC----CCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCC-CHH
Q 047598 331 VASTMG---PIKHYNL----KRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTT-RCD 402 (1112)
Q Consensus 331 v~~~~~---~~~~~~l----~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~ 402 (1112)
-..... ....+++ =.++.+|+.++|...... +..+...+.+.+...|-+-|+..++=.++.. +.+
T Consensus 172 ~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 172 QLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred CCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 322110 1112222 257899999999876411 1112346889999999999999999888843 333
Q ss_pred HHHHHHhccccCCCCCCCchH-HHHHHhcCCchHHHHHHhHhhcCCCCceechHHHHHHHHhCCcccccCCCchHHHHHH
Q 047598 403 LWEDILDSKIWDLPQQSGILP-VLRLSYHHLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGS 481 (1112)
Q Consensus 403 ~w~~~l~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~ 481 (1112)
.-...+.-. ...+.. -..--++.||+++|..++-+|+++.- .+.|+..-.+ ++-+.
T Consensus 245 q~~~~LsG~------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg-------------~~ng~ 301 (894)
T COG2909 245 QSLRGLSGA------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALTG-------------EENGQ 301 (894)
T ss_pred HHhhhccch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhc-------------CCcHH
Confidence 222222100 000111 12234689999999999999998542 2344443211 23467
Q ss_pred HHHHHHhhCCccc-cccCCCccceechhHHHHHHHhhcc
Q 047598 482 QCFHDLVSRSIFQ-PSSRNSCKFVMHDLVHDLAQLVSGE 519 (1112)
Q Consensus 482 ~~~~~L~~~~l~~-~~~~~~~~~~~H~lv~~~~~~~~~~ 519 (1112)
..+++|.+++++- +-++....|+.|.++.+|.+.....
T Consensus 302 amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 302 AMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 7899999999974 4454567899999999998765543
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.94 E-value=3e-08 Score=109.33 Aligned_cols=277 Identities=17% Similarity=0.108 Sum_probs=147.4
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..|+|++..++.+..++..... .......+.++|++|+|||+||+.+++..... +. .+..+..... ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~---~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~-----~~---~~~~~~~~~~-~~ 71 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM---RQEALDHLLLYGPPGLGKTTLAHIIANEMGVN-----LK---ITSGPALEKP-GD 71 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh---cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC-----EE---EeccchhcCc-hh
Confidence 3689999999999888863111 12334567899999999999999999875422 21 1111111111 11
Q ss_pred HHHHHHHhcCCC----CCCCC-hHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhhh
Q 047598 258 SKALLESITRKP----CHLNT-LNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHVA 332 (1112)
Q Consensus 258 ~~~il~~l~~~~----~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~ 332 (1112)
+...+..++... ++... .......+...+.+.+..+|+++..+.. .| ...+ .+.+-|..||+...+.
T Consensus 72 l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~~~~~l~ 143 (305)
T TIGR00635 72 LAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATTRAGMLT 143 (305)
T ss_pred HHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecCCccccC
Confidence 222233332211 00000 0112233444555555666666553321 11 1111 1245566677765443
Q ss_pred hhcC--CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCCCHHHHHHHHhc
Q 047598 333 STMG--PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTTRCDLWEDILDS 410 (1112)
Q Consensus 333 ~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~l~~ 410 (1112)
.... ....+.+++++.++..+++.+.+...... ...+....|++.|+|.|-.+..++..+ |......
T Consensus 144 ~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~----~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~ 212 (305)
T TIGR00635 144 SPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE----IEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVR 212 (305)
T ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHc
Confidence 3211 13467899999999999999887543221 223456789999999997665554432 1111000
Q ss_pred cccCCCC--CCCchHHHHHHhcCCchHHHHHHh-HhhcCCCCceechHHHHHHHHhCCcccccCCCchHHHHHHHHHH-H
Q 047598 411 KIWDLPQ--QSGILPVLRLSYHHLPSYLKRCFA-YCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGSQCFH-D 486 (1112)
Q Consensus 411 ~~~~~~~--~~~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~-~ 486 (1112)
....... -......+...|..++++.+..+. .++.++.+ .+..+.+.... | .....++..++ .
T Consensus 213 ~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~e~~ 279 (305)
T TIGR00635 213 GQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVYEPY 279 (305)
T ss_pred CCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhhhHH
Confidence 0000000 011222245567888888877666 44666543 44444444322 1 11234566677 6
Q ss_pred HhhCCccccccC
Q 047598 487 LVSRSIFQPSSR 498 (1112)
Q Consensus 487 L~~~~l~~~~~~ 498 (1112)
|++++|++....
T Consensus 280 Li~~~li~~~~~ 291 (305)
T TIGR00635 280 LLQIGFLQRTPR 291 (305)
T ss_pred HHHcCCcccCCc
Confidence 999999975543
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=4.7e-11 Score=133.48 Aligned_cols=87 Identities=22% Similarity=0.203 Sum_probs=52.8
Q ss_pred ccccCCcccEEEeccccc-----ccccccccCCCcCcEEEcccccccc-------ccccccCCCCCcEEeecCCCCCccc
Q 047598 587 LLPKFKRLRVLSLQRYYI-----GELLVSFEDLKLLRYLNLADTMIRT-------LPESTNSLLNLEILILRNCSRLKKL 654 (1112)
Q Consensus 587 ~~~~~~~L~~L~L~~~~~-----~~lp~~~~~l~~Lr~L~Ls~n~i~~-------lp~~i~~L~~L~~L~L~~~~~l~~l 654 (1112)
.+..+..|++|+++++.+ ..++..+...+.|++|+++++.+.. ++..+..+++|+.|++++|......
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 345556677777777766 2344556666667777777765542 2344556677777777776433344
Q ss_pred CccccCCcc---ccEEeecCCC
Q 047598 655 PSKMRNLIN---LHHLDIKGAN 673 (1112)
Q Consensus 655 p~~i~~L~~---L~~L~L~~~~ 673 (1112)
+..+..+.+ |++|++++|.
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCc
Confidence 444444444 7777777766
No 33
>PF05729 NACHT: NACHT domain
Probab=98.92 E-value=7.6e-09 Score=103.03 Aligned_cols=147 Identities=25% Similarity=0.332 Sum_probs=91.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCC-CCceeEEEEeCCCCCHH---HHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDF-KFDIKAWVCISDVFDVL---SISKALLESITRKPCHLNTLNEVQVDLK 283 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~-~F~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l~ 283 (1112)
|++.|+|.+|+||||+++.++.......... .+...+|.......... .+...+..+..... .........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~-- 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQE-- 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHH--
Confidence 5899999999999999999988765442111 15667777776554432 33333333332221 111111111
Q ss_pred HHhCCCcEEEEEeCCCCCCh--h-----hHHHHHhcccC--CCCCcEEEEEcCChhh---hhhcCCCceeeCCCCChHhH
Q 047598 284 TAVDGKRFLLVLDDVWNEDY--S-----LWVDLKAPLLA--AAPNSKMIITTRHSHV---ASTMGPIKHYNLKRLLDEDC 351 (1112)
Q Consensus 284 ~~l~~kr~LlVlDdv~~~~~--~-----~~~~l~~~l~~--~~~gs~iivTTR~~~v---~~~~~~~~~~~l~~L~~~~~ 351 (1112)
..-..++++||+|+++.... . .+.++...+.. ..+++++|||+|.... .........+.+.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 12257899999999975432 1 13333333332 2578999999998766 33344456899999999999
Q ss_pred HHHHHHhH
Q 047598 352 WSIFIKHA 359 (1112)
Q Consensus 352 ~~Lf~~~~ 359 (1112)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99887653
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=3.1e-11 Score=134.94 Aligned_cols=101 Identities=20% Similarity=0.128 Sum_probs=68.8
Q ss_pred EEEecccccc--cccccccCCCcCcEEEccccccc-----cccccccCCCCCcEEeecCCCCCc-------ccCccccCC
Q 047598 596 VLSLQRYYIG--ELLVSFEDLKLLRYLNLADTMIR-----TLPESTNSLLNLEILILRNCSRLK-------KLPSKMRNL 661 (1112)
Q Consensus 596 ~L~L~~~~~~--~lp~~~~~l~~Lr~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~~l~-------~lp~~i~~L 661 (1112)
.|+|..+.++ ..+..+..+.+|++|+++++.+. .+++.+...++|++|+++++. +. .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhc
Confidence 3566666553 34455667778999999999873 567777888899999999873 33 234557778
Q ss_pred ccccEEeecCCCccccCCCCCCCCCC---CCccCeeeec
Q 047598 662 INLHHLDIKGANLLREMPLGMKELKN---LRTLSNFIVG 697 (1112)
Q Consensus 662 ~~L~~L~L~~~~~l~~lp~~i~~l~~---L~~L~~~~~~ 697 (1112)
++|++|++++|.+....+..+..+.+ |++|++..+.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 89999999998854334433433333 6666665543
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.88 E-value=3.5e-07 Score=106.30 Aligned_cols=254 Identities=13% Similarity=0.060 Sum_probs=146.8
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCC--ceeEEEEeCCCCCHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKF--DIKAWVCISDVFDVL 255 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F--~~~~wv~~~~~~~~~ 255 (1112)
..+.|||++.++|...|...-. +.....++.|+|.+|.|||++++.|.+........... -.+++|.+....+..
T Consensus 755 D~LPhREeEIeeLasfL~paIk---gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK---QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh---cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 4688999999999998865211 22334688899999999999999998765322111111 135677777777788
Q ss_pred HHHHHHHHHhcCCCC-CCCChHHHHHHHHHHhC---CCcEEEEEeCCCCCChhhHHHHHhcccC-CCCCcEEEE--EcCC
Q 047598 256 SISKALLESITRKPC-HLNTLNEVQVDLKTAVD---GKRFLLVLDDVWNEDYSLWVDLKAPLLA-AAPNSKMII--TTRH 328 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--TTR~ 328 (1112)
.++..|.+++....+ ......+....+...+. +...+||||+++.-....=+.+...+.+ ...+++|+| +|..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 889999998854432 22233444555555442 2245899999964321110112222211 224556554 3332
Q ss_pred h--------hhhhhcCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCC-
Q 047598 329 S--------HVASTMGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTT- 399 (1112)
Q Consensus 329 ~--------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~- 399 (1112)
. .+...++ ...+...|++.++-.+++..++-.....-++..++.+|+.++..-|..=.||.++-.+....
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKR 990 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC
Confidence 2 2222222 23466799999999999999886433333445555666666655566666776665544321
Q ss_pred ----CHHHHHHHHhccccCCCCCCCchHHHHHHhcCCchHHHHHHhHhh
Q 047598 400 ----RCDLWEDILDSKIWDLPQQSGILPVLRLSYHHLPSYLKRCFAYCA 444 (1112)
Q Consensus 400 ----~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a 444 (1112)
..++...+.... ....+.-....||.+.|-.++.+.
T Consensus 991 gskVT~eHVrkAleei---------E~srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 991 GQKIVPRDITEATNQL---------FDSPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred CCccCHHHHHHHHHHH---------HhhhHHHHHHcCCHHHHHHHHHHH
Confidence 233333333221 011233344678988776554343
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.78 E-value=3.5e-10 Score=122.90 Aligned_cols=192 Identities=22% Similarity=0.192 Sum_probs=125.7
Q ss_pred cccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCC
Q 047598 593 RLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGA 672 (1112)
Q Consensus 593 ~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~ 672 (1112)
.-...||+.|.+..+|..++.+..|..|.|.+|.+..+|+.+++|..|.+|||+.| .+..+|..++.|+ |+.|-+++|
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecC
Confidence 33446777777777777777777777777777777777777777777777777776 6777777776665 777777777
Q ss_pred CccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCC
Q 047598 673 NLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGS 752 (1112)
Q Consensus 673 ~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 752 (1112)
+ ++.+|.+++.+.+|..|+.+.|.+.+.+..+..+..|..+. +..+.
T Consensus 154 k-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~--------------------------------vrRn~ 200 (722)
T KOG0532|consen 154 K-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN--------------------------------VRRNH 200 (722)
T ss_pred c-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH--------------------------------Hhhhh
Confidence 6 67777777777777777777776666655555555554442 11110
Q ss_pred CCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC---CCCCCCCcce
Q 047598 753 QFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP---SLGLLSSLRE 829 (1112)
Q Consensus 753 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~---~l~~l~~L~~ 829 (1112)
.....+.+. .-.|..|++++|....+|..+.. ++.|++|-|.+|.+..... ..|...-.++
T Consensus 201 -------------l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~--m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 201 -------------LEDLPEELC-SLPLIRLDFSCNKISYLPVDFRK--MRHLQVLQLENNPLQSPPAQICEKGKVHIFKY 264 (722)
T ss_pred -------------hhhCCHHHh-CCceeeeecccCceeecchhhhh--hhhheeeeeccCCCCCChHHHHhccceeeeee
Confidence 111111111 22356677777777778877765 8888888888887643221 3455555677
Q ss_pred EEecCC
Q 047598 830 LTIQGL 835 (1112)
Q Consensus 830 L~L~~~ 835 (1112)
|+..-|
T Consensus 265 L~~qA~ 270 (722)
T KOG0532|consen 265 LSTQAC 270 (722)
T ss_pred ecchhc
Confidence 777766
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.69 E-value=3.1e-07 Score=95.64 Aligned_cols=152 Identities=17% Similarity=0.155 Sum_probs=94.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
...+.|+|.+|+|||+||+++++..... ...+.|+++.... .... .+.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~-----~~~~~y~~~~~~~---~~~~---------------------~~~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLN-----QRTAIYIPLSKSQ---YFSP---------------------AVLENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-----CCCeEEeeHHHhh---hhhH---------------------HHHhhc
Confidence 3578999999999999999999875322 2344566653210 0000 111112
Q ss_pred CCCcEEEEEeCCCCCC-hhhHHH-HHhcccCC-CCCcEEEE-EcCC---------hhhhhhcCCCceeeCCCCChHhHHH
Q 047598 287 DGKRFLLVLDDVWNED-YSLWVD-LKAPLLAA-APNSKMII-TTRH---------SHVASTMGPIKHYNLKRLLDEDCWS 353 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iiv-TTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~ 353 (1112)
. +.-+||+||+|... ...|+. +...+... ..|..+|| |++. +.+.+.+.....++++++++++.++
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 2 23489999998642 245653 22223221 23556655 4443 3566666667789999999999999
Q ss_pred HHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 354 IFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 354 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
++.+.++...-. .-+++..-|++.+.|..-++..+
T Consensus 169 iL~~~a~~~~l~----l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 169 VLQRNAYQRGIE----LSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHH
Confidence 999988754321 22345678888888766554433
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.2e-08 Score=117.43 Aligned_cols=107 Identities=30% Similarity=0.390 Sum_probs=90.2
Q ss_pred ccCCcccEEEecccccccccccccCCC-cCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEE
Q 047598 589 PKFKRLRVLSLQRYYIGELLVSFEDLK-LLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHL 667 (1112)
Q Consensus 589 ~~~~~L~~L~L~~~~~~~lp~~~~~l~-~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 667 (1112)
..+..+..|++.+|.+..+|.....+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence 344778899999999999988887775 899999999999999888899999999999998 788888877788999999
Q ss_pred eecCCCccccCCCCCCCCCCCCccCeeeec
Q 047598 668 DIKGANLLREMPLGMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 668 ~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~ 697 (1112)
++++|. +..+|..++.+..|++|.+..+.
T Consensus 192 ~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 192 DLSGNK-ISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred eccCCc-cccCchhhhhhhhhhhhhhcCCc
Confidence 999988 78888777677778888777664
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=8.4e-09 Score=100.19 Aligned_cols=78 Identities=28% Similarity=0.393 Sum_probs=16.8
Q ss_pred cccEEEeccccccccccccc-CCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCcccc-CCccccEEeec
Q 047598 593 RLRVLSLQRYYIGELLVSFE-DLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMR-NLINLHHLDIK 670 (1112)
Q Consensus 593 ~L~~L~L~~~~~~~lp~~~~-~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~-~L~~L~~L~L~ 670 (1112)
.++.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..++..+. .+++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECc
Confidence 4455555555554442 233 3445555555555555542 3445555555555554 4444443332 34555555555
Q ss_pred CCC
Q 047598 671 GAN 673 (1112)
Q Consensus 671 ~~~ 673 (1112)
+|.
T Consensus 97 ~N~ 99 (175)
T PF14580_consen 97 NNK 99 (175)
T ss_dssp TS-
T ss_pred CCc
Confidence 554
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=1.5e-08 Score=98.44 Aligned_cols=130 Identities=24% Similarity=0.309 Sum_probs=54.7
Q ss_pred hccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccc-
Q 047598 556 FYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPEST- 634 (1112)
Q Consensus 556 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i- 634 (1112)
+.+..++|.|.+.++.. + .....-..+..|++|+|++|.|..+. .+..+++|+.|++++|.|+.+++.+
T Consensus 15 ~~n~~~~~~L~L~~n~I-------~--~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQI-------S--TIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHH
T ss_pred ccccccccccccccccc-------c--cccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchH
Confidence 33445567777766541 1 11221225688999999999999885 6888999999999999999997666
Q ss_pred cCCCCCcEEeecCCCCCcccCc--cccCCccccEEeecCCCccccCCCC----CCCCCCCCccCeeeec
Q 047598 635 NSLLNLEILILRNCSRLKKLPS--KMRNLINLHHLDIKGANLLREMPLG----MKELKNLRTLSNFIVG 697 (1112)
Q Consensus 635 ~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~~~~~~ 697 (1112)
..+++|++|++++| .+..+.. .+..+++|++|++.+|.. ...+.. +..+++|+.|+...+.
T Consensus 85 ~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 85 KNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred HhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEcc
Confidence 46999999999998 6665543 467899999999999984 444431 5678888888865544
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=4.5e-10 Score=117.84 Aligned_cols=299 Identities=17% Similarity=0.183 Sum_probs=152.1
Q ss_pred CCceEEEeccCCCCCCCc-cCCCCCCceeEEEEcCcCCCCCCC--C-CCCCCCcceEEecCCCCceecCccccCCCCccc
Q 047598 778 CIKNLTIKQYNGARFPSW-LGDPLFSKMEVLKLENCWNCTSLP--S-LGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKP 853 (1112)
Q Consensus 778 ~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~--~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~ 853 (1112)
.|+.|.+.|+........ .....++++++|.+.+|...+.-. . -..+++|++|++..|..++...-.... ..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la----~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA----EG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH----Hh
Confidence 466667766654333211 111236677777777776544322 1 235667777777776666554332111 12
Q ss_pred CcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCc-
Q 047598 854 FQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALP- 932 (1112)
Q Consensus 854 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp- 932 (1112)
+++|++|+++.|+....- ........+..++.+.+.+|..+....-.. ..-..+.+..+++..|..++...
T Consensus 215 C~kL~~lNlSwc~qi~~~-------gv~~~~rG~~~l~~~~~kGC~e~~le~l~~-~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGN-------GVQALQRGCKELEKLSLKGCLELELEALLK-AAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred hhhHHHhhhccCchhhcC-------cchHHhccchhhhhhhhcccccccHHHHHH-HhccChHhhccchhhhccccchHH
Confidence 677777777776654431 111112333444444444443332100000 00001111222233444443221
Q ss_pred -ccCCCCCCcCEEEEecCCCCcccCCC---CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCc
Q 047598 933 -NDMHRLNFLEHLRIGQCPSILSFPEE---GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPN 1008 (1112)
Q Consensus 933 -~~l~~l~~L~~L~L~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~ 1008 (1112)
..-..+..|+.|..++|..++..+.. ...++|++|-+.+|...........-.+.+.|+.+++..|.......+..
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence 11124566677777777665544332 34567777777777543322222223456667777776654221110100
Q ss_pred ccccccCCCCccEEEecCCCCCCcC---------CCCCCCCeEEeecCCCCCcC--CCCCCCCCccEEEEccCcchHHhh
Q 047598 1009 EEMGVMLPSSLTHLTIAGFKKLKKL---------SLMTSLEYLWIKNCPNLASF--PELGLPSSLTQLYIDHCPLVKKEC 1077 (1112)
Q Consensus 1009 ~~~~~~~~~sL~~L~l~~~~~L~~l---------~~l~~L~~L~ls~c~~l~~l--p~~~~~~~L~~L~l~~c~~l~~~~ 1077 (1112)
-. ..-+.|+.|+++.|..+++. ..+..|+.|.+++||.+..- -.+..++.|+.+++.+|..+.+.-
T Consensus 367 ls---~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 367 LS---RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hc---cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 00 11255677777766666554 15778999999999988763 346778899999999998775321
Q ss_pred ccCCCCccccccccceeEeC
Q 047598 1078 KMDKGKEWSKIAHIPCVEID 1097 (1112)
Q Consensus 1078 ~~~~~~~~~ki~~i~~~~~~ 1097 (1112)
-+ .--.|.|.+.+.
T Consensus 444 i~------~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 444 IS------RFATHLPNIKVH 457 (483)
T ss_pred hH------HHHhhCccceeh
Confidence 11 112366766554
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.5e-09 Score=112.98 Aligned_cols=116 Identities=20% Similarity=0.150 Sum_probs=53.8
Q ss_pred CCCCcCEEEEecCCCCcccC-CCCCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCcccccccC
Q 047598 937 RLNFLEHLRIGQCPSILSFP-EEGFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVML 1015 (1112)
Q Consensus 937 ~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~ 1015 (1112)
.+|+|+.|.+.+|..+..-. ....+..|+.|+|++|..+. ...-.....++.|..|+++.|.. .
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi---~----------- 284 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGI---A----------- 284 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCc---c-----------
Confidence 45555555555553221111 11234555555555553222 11112345666666666666541 1
Q ss_pred CCCccEEEecCCCCCCcCCCCCCCCeEEeecCCC--CCcCCCCCCCCCccEEEEccCcc
Q 047598 1016 PSSLTHLTIAGFKKLKKLSLMTSLEYLWIKNCPN--LASFPELGLPSSLTQLYIDHCPL 1072 (1112)
Q Consensus 1016 ~~sL~~L~l~~~~~L~~l~~l~~L~~L~ls~c~~--l~~lp~~~~~~~L~~L~l~~c~~ 1072 (1112)
++.+-+|..+.....+++|++|+++.|+. ..++-++..+++|+.|.+..|+.
T Consensus 285 -----si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 285 -----SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred -----hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 11122222223333566777777777643 22333344555666666555544
No 43
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.60 E-value=1.4e-06 Score=107.22 Aligned_cols=309 Identities=15% Similarity=0.160 Sum_probs=175.6
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC---CHHH
Q 047598 180 VYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF---DVLS 256 (1112)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~---~~~~ 256 (1112)
++||+.+.+.|...+... ..+...|+.+.|..|||||+|+++|.+..... .+.|-...+-...... ...+
T Consensus 2 l~GRe~ev~~Ll~~f~~v-----~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~--~~~~i~~~f~q~~~~ipl~~lvq 74 (849)
T COG3899 2 LYGRETELAQLLAAFDRV-----SKGRGEVVLVAGESGIGKSALVNEVHKPITQQ--RGYFIKGKFDQFERNIPLSPLVQ 74 (849)
T ss_pred CCchHhHHHHHHHHHHHH-----hCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc--ceeeeHhhcccccCCCchHHHHH
Confidence 689999999999998652 23456799999999999999999998875422 1222111111111221 2223
Q ss_pred HHHHHHHHhcC-------------------CCC-----------------C-----CCChHHH-----HHHHHHHh-CCC
Q 047598 257 ISKALLESITR-------------------KPC-----------------H-----LNTLNEV-----QVDLKTAV-DGK 289 (1112)
Q Consensus 257 ~~~~il~~l~~-------------------~~~-----------------~-----~~~~~~~-----~~~l~~~l-~~k 289 (1112)
..++++.++.. ... . ....+.. ...+.... +.+
T Consensus 75 ~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~ 154 (849)
T COG3899 75 AFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEH 154 (849)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccC
Confidence 44444444311 000 0 0000111 11122222 456
Q ss_pred cEEEEEeCCCCCChhhHHHHHhcccCCC----CCcEEEEEcCCh----hhhhhcCCCceeeCCCCChHhHHHHHHHhHhC
Q 047598 290 RFLLVLDDVWNEDYSLWVDLKAPLLAAA----PNSKMIITTRHS----HVASTMGPIKHYNLKRLLDEDCWSIFIKHAYE 361 (1112)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTTR~~----~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 361 (1112)
+.++|+||+...+....+-+........ ....|..+.... .+.........+.|.||+..+...+.......
T Consensus 155 plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 155 PLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred CeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 9999999996554333332222221111 011233322222 22222234578999999999999999887643
Q ss_pred CCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCC-------CHHHHHHHHhccccCCCCCCCchHHHHHHhcCCch
Q 047598 362 SRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTT-------RCDLWEDILDSKIWDLPQQSGILPVLRLSYHHLPS 434 (1112)
Q Consensus 362 ~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-------~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~ 434 (1112)
... ...+....|+++.+|+|+.+..+-..+... ....|..-... ....+..+.+...+..-.+.||.
T Consensus 235 ~~~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 235 TKL-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred ccc-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhhHHHHHHHHHHHhcCCH
Confidence 222 223357889999999999999999888775 22334322211 11111122355678889999999
Q ss_pred HHHHHHhHhhcCCCCceechHHHHHHHHhCCcccccCCCchHHHHHHHHHHHHhhCCcccccc-----CCCccc---eec
Q 047598 435 YLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGSQCFHDLVSRSIFQPSS-----RNSCKF---VMH 506 (1112)
Q Consensus 435 ~~k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-----~~~~~~---~~H 506 (1112)
..++.+-..|++-.. |+.+.|...|- +.....+...++.|....++...+ .+.... ..|
T Consensus 309 ~t~~Vl~~AA~iG~~--F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 TTREVLKAAACIGNR--FDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHhCcc--CCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 999999999999544 45666655441 234455666666666655553221 111112 467
Q ss_pred hhHHHHHH
Q 047598 507 DLVHDLAQ 514 (1112)
Q Consensus 507 ~lv~~~~~ 514 (1112)
+.+++.|-
T Consensus 376 ~~vqqaaY 383 (849)
T COG3899 376 DRVQQAAY 383 (849)
T ss_pred HHHHHHHh
Confidence 88777664
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.59 E-value=7.4e-07 Score=94.39 Aligned_cols=153 Identities=21% Similarity=0.264 Sum_probs=93.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKT 284 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 284 (1112)
+.+.-..+||++|+||||||+.+...... .| +.++...+-.+-++.+++... +.
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~-----~f-----~~~sAv~~gvkdlr~i~e~a~----------------~~ 99 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNA-----AF-----EALSAVTSGVKDLREIIEEAR----------------KN 99 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCC-----ce-----EEeccccccHHHHHHHHHHHH----------------HH
Confidence 45667789999999999999999986542 23 344444433333333333211 22
Q ss_pred HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEE--EcCChhhh---hhcCCCceeeCCCCChHhHHHHHHHhH
Q 047598 285 AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMII--TTRHSHVA---STMGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 285 ~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v~---~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
...++|.+|++|.|..-+..+-+. .+|.-..|.-|+| ||.++... ...+...++.+++|+.++-.+++.+.+
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 345899999999996543222222 2344456777766 66666432 122345789999999999999998844
Q ss_pred hCCCC-CC--CchhHHHHHHHHHhhcCCch
Q 047598 360 YESRS-LK--AHQISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 360 ~~~~~-~~--~~~~~~~~~~~i~~~c~glP 386 (1112)
..... .. .....+++...++..++|--
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 22211 11 11122445677888888864
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.58 E-value=8.9e-07 Score=101.19 Aligned_cols=177 Identities=19% Similarity=0.235 Sum_probs=104.2
Q ss_pred cceecchhhHHH---HHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCH
Q 047598 178 RAVYGRDKDKAR---ILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDV 254 (1112)
Q Consensus 178 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~ 254 (1112)
..++|++..+.. +..++.. .....+.++|++|+||||+|+.+++... ..| +.++.....
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~--------~~~~~ilL~GppGtGKTtLA~~ia~~~~-----~~~-----~~l~a~~~~ 73 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA--------GRLSSMILWGPPGTGKTTLARIIAGATD-----APF-----EALSAVTSG 73 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc--------CCCceEEEECCCCCCHHHHHHHHHHHhC-----CCE-----EEEeccccc
Confidence 357888777555 6666644 2345678899999999999999988643 222 222222111
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEE--EcCChh-
Q 047598 255 LSISKALLESITRKPCHLNTLNEVQVDLKT-AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMII--TTRHSH- 330 (1112)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~- 330 (1112)
..-.+.+++. ... ...+++.+|++|+++.......+.+...+. .|..++| ||.+..
T Consensus 74 ~~~ir~ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~ 133 (413)
T PRK13342 74 VKDLREVIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSF 133 (413)
T ss_pred HHHHHHHHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhh
Confidence 1112222221 111 124578999999998765555555554443 2444444 344332
Q ss_pred -hh-hhcCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHh
Q 047598 331 -VA-STMGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLG 393 (1112)
Q Consensus 331 -v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1112)
+. ........+.+.+++.++.++++.+.+..... ......++..+.|++.|+|.|..+.-+.
T Consensus 134 ~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 134 EVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11 11123367899999999999999886533111 0002224456788999999987654443
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.50 E-value=5.6e-07 Score=98.12 Aligned_cols=161 Identities=24% Similarity=0.415 Sum_probs=90.4
Q ss_pred CCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCCCCCCCCC
Q 047598 886 IFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEEGFPTNLA 965 (1112)
Q Consensus 886 ~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~ 965 (1112)
.++++..|++++| .|+ .+|...++|+.|. +.+|..+..+|..+ .++|+.|++++|..+..+ +++|+
T Consensus 50 ~~~~l~~L~Is~c-~L~-sLP~LP~sLtsL~-----Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe 115 (426)
T PRK15386 50 EARASGRLYIKDC-DIE-SLPVLPNELTEIT-----IENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVR 115 (426)
T ss_pred HhcCCCEEEeCCC-CCc-ccCCCCCCCcEEE-----ccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccc
Confidence 3566777777776 566 5664444555543 56677777776544 357788888877655443 35677
Q ss_pred eEEEcCCcccccccccccCCCC-CCcCEEEEcccCCccccccCcccccccCCCCccEEEecCCCCCCcCC-CCCCCCeEE
Q 047598 966 SLVIGGDVKMYKGLIQWGLHRL-TALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKKLKKLS-LMTSLEYLW 1043 (1112)
Q Consensus 966 ~L~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L~~l~-~l~~L~~L~ 1043 (1112)
.|++.++... .+..+ ++|+.|.+.+++......++ ..+|++|+.|++.+|..+..-+ -..+|+.|+
T Consensus 116 ~L~L~~n~~~-------~L~~LPssLk~L~I~~~n~~~~~~lp-----~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ 183 (426)
T PRK15386 116 SLEIKGSATD-------SIKNVPNGLTSLSINSYNPENQARID-----NLISPSLKTLSLTGCSNIILPEKLPESLQSIT 183 (426)
T ss_pred eEEeCCCCCc-------ccccCcchHhheeccccccccccccc-----cccCCcccEEEecCCCcccCcccccccCcEEE
Confidence 7777654211 12233 25667776543211111112 1467788888888777653211 125788888
Q ss_pred eecCCCCC-cCCCCCCCCCccEEEEccCcch
Q 047598 1044 IKNCPNLA-SFPELGLPSSLTQLYIDHCPLV 1073 (1112)
Q Consensus 1044 ls~c~~l~-~lp~~~~~~~L~~L~l~~c~~l 1073 (1112)
++.|.... .++.-..++++ .|++.+|-.+
T Consensus 184 ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 184 LHIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred ecccccccccCccccccccc-Eechhhhccc
Confidence 87763221 23322234566 7777777444
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=2e-08 Score=100.50 Aligned_cols=109 Identities=23% Similarity=0.218 Sum_probs=91.0
Q ss_pred cccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEE
Q 047598 588 LPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHL 667 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 667 (1112)
....+.|..|||++|.|+.+-+++.-++.+|.|++|+|.|..+.. +..|++|+.|||++| .+..+...-.+|-|.+.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeee
Confidence 344577999999999999998888889999999999999998854 888999999999998 677777666788899999
Q ss_pred eecCCCccccCCCCCCCCCCCCccCeeeeccCC
Q 047598 668 DIKGANLLREMPLGMKELKNLRTLSNFIVGKGE 700 (1112)
Q Consensus 668 ~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~ 700 (1112)
.|++|. +..+ .++++|-+|..|++..|.+..
T Consensus 358 ~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 358 KLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred ehhhhh-Hhhh-hhhHhhhhheeccccccchhh
Confidence 999987 5554 578888889888888776543
No 48
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.46 E-value=3.2e-07 Score=86.95 Aligned_cols=121 Identities=23% Similarity=0.254 Sum_probs=81.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1112)
+.+++.|+|.+|+|||++++.+.++.........-..++|+.+....+...+...++.+++.......+..++...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35689999999999999999999875321000113456799998888999999999999998765555667777777777
Q ss_pred hCCCc-EEEEEeCCCCC-ChhhHHHHHhcccCCCCCcEEEEEcCC
Q 047598 286 VDGKR-FLLVLDDVWNE-DYSLWVDLKAPLLAAAPNSKMIITTRH 328 (1112)
Q Consensus 286 l~~kr-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~ 328 (1112)
+...+ .+||+|++..- ....++.+.. +.+ ..+.++|++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 76555 59999999654 4333444433 223 566677777654
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=5e-09 Score=114.18 Aligned_cols=109 Identities=27% Similarity=0.404 Sum_probs=59.1
Q ss_pred cCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEee
Q 047598 590 KFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDI 669 (1112)
Q Consensus 590 ~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 669 (1112)
.|..|..|.|..|.+..+|..++.+..|.||||+.|++..+|..++.|+ |++|-+++| +++.+|..++-+..|.+|+.
T Consensus 96 ~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 96 AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhh
Confidence 3444555555555555555555555555555555555555555555443 555555554 55555555555555555555
Q ss_pred cCCCccccCCCCCCCCCCCCccCeeeeccCCc
Q 047598 670 KGANLLREMPLGMKELKNLRTLSNFIVGKGEA 701 (1112)
Q Consensus 670 ~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~ 701 (1112)
+.|. +..+|..++.+.+|+.|.+..+.....
T Consensus 174 s~ne-i~slpsql~~l~slr~l~vrRn~l~~l 204 (722)
T KOG0532|consen 174 SKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDL 204 (722)
T ss_pred hhhh-hhhchHHhhhHHHHHHHHHhhhhhhhC
Confidence 5555 455555555555555555555444433
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.7e-08 Score=106.81 Aligned_cols=158 Identities=17% Similarity=0.073 Sum_probs=83.9
Q ss_pred CCceeEEEEcCcCCCCCCC---CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCC
Q 047598 801 FSKMEVLKLENCWNCTSLP---SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKG 877 (1112)
Q Consensus 801 l~~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 877 (1112)
|++++.|+|+.|-+....+ ...++|+|+.|+|+.|.......... ...++.|+.|.++.|.- ..
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-----~~~l~~lK~L~l~~CGl--------s~ 211 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-----TLLLSHLKQLVLNSCGL--------SW 211 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-----hhhhhhhheEEeccCCC--------CH
Confidence 7888888888876654333 45678888888888765433222211 11266677777766531 11
Q ss_pred CCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCccc--
Q 047598 878 NDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSF-- 955 (1112)
Q Consensus 878 ~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~-- 955 (1112)
.+.......||+|+.|++..++.+. -.. . ....+..|++|+|++|+.+..-
T Consensus 212 k~V~~~~~~fPsl~~L~L~~N~~~~---~~~----------------------~--~~~i~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 212 KDVQWILLTFPSLEVLYLEANEIIL---IKA----------------------T--STKILQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred HHHHHHHHhCCcHHHhhhhcccccc---eec----------------------c--hhhhhhHHhhccccCCcccccccc
Confidence 1111223457777777777732211 100 0 1123445666666666544322
Q ss_pred CCCCCCCCCCeEEEcCCccccccccccc-----CCCCCCcCEEEEcccC
Q 047598 956 PEEGFPTNLASLVIGGDVKMYKGLIQWG-----LHRLTALRRLEIDGCH 999 (1112)
Q Consensus 956 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~n~ 999 (1112)
+..+.++.|..|+++.|..- +...+.. ...+++|+.|+++.|+
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccccccchhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCc
Confidence 23355666666666666211 1111111 3457788888888876
No 51
>PRK04195 replication factor C large subunit; Provisional
Probab=98.45 E-value=2.7e-05 Score=91.05 Aligned_cols=247 Identities=15% Similarity=0.117 Sum_probs=140.2
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
-..++|.+..++.+.+|+..-. .+...+.+.|+|++|+||||+|+.++++.. |+ .+-+..++..+..
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~----~g~~~~~lLL~GppG~GKTtla~ala~el~-------~~-~ielnasd~r~~~- 79 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWL----KGKPKKALLLYGPPGVGKTSLAHALANDYG-------WE-VIELNASDQRTAD- 79 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHh----cCCCCCeEEEECCCCCCHHHHHHHHHHHcC-------CC-EEEEcccccccHH-
Confidence 3569999999999999986411 112367899999999999999999998752 22 2233444332222
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh----hhHHHHHhcccCCCCCcEEEEEcCChh-h
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDY----SLWVDLKAPLLAAAPNSKMIITTRHSH-V 331 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTTR~~~-v 331 (1112)
....++....... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+.. .
T Consensus 80 ~i~~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~ 143 (482)
T PRK04195 80 VIERVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDP 143 (482)
T ss_pred HHHHHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCcccc
Confidence 2233322221110 00113678999999976432 234445444432 3345666665432 2
Q ss_pred hh-hc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCC----CHHHHH
Q 047598 332 AS-TM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTT----RCDLWE 405 (1112)
Q Consensus 332 ~~-~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~----~~~~w~ 405 (1112)
.. .. .....+.+.+++.++....+...+...+...+ .++...|++.++|..-.+......+... +.+...
T Consensus 144 ~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~ 219 (482)
T PRK04195 144 SLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVK 219 (482)
T ss_pred chhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHH
Confidence 11 11 23467899999999988888776644332222 3456889999998765554433333322 344444
Q ss_pred HHHhccccCCCCCCCchHHHHHHhc-CCchHHHHHHhHhhcCCCCceechHHHHHHHHhCCcccc
Q 047598 406 DILDSKIWDLPQQSGILPVLRLSYH-HLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQ 469 (1112)
Q Consensus 406 ~~l~~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~ 469 (1112)
.+... ....+++.++..-+. .-+......+.. ..++. ..+-.|+.+.+...
T Consensus 220 ~~~~~-----d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 220 TLGRR-----DREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred HhhcC-----CCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 33321 113567777776665 333333332222 22333 34678999999764
No 52
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.43 E-value=2.3e-06 Score=89.87 Aligned_cols=169 Identities=13% Similarity=0.102 Sum_probs=98.4
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHH
Q 047598 183 RDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALL 262 (1112)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 262 (1112)
.+..++.+.+++.. .....+.|+|.+|+|||+||+.+++.... .....++++++.-.+. .
T Consensus 22 ~~~~~~~l~~~~~~--------~~~~~lll~G~~G~GKT~la~~~~~~~~~-----~~~~~~~i~~~~~~~~------~- 81 (226)
T TIGR03420 22 NAELLAALRQLAAG--------KGDRFLYLWGESGSGKSHLLQAACAAAEE-----RGKSAIYLPLAELAQA------D- 81 (226)
T ss_pred cHHHHHHHHHHHhc--------CCCCeEEEECCCCCCHHHHHHHHHHHHHh-----cCCcEEEEeHHHHHHh------H-
Confidence 34456666666532 23468899999999999999999886431 1233455554332110 0
Q ss_pred HHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChh-hHH-HHHhcccC-CCCCcEEEEEcCChh---------
Q 047598 263 ESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYS-LWV-DLKAPLLA-AAPNSKMIITTRHSH--------- 330 (1112)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~~-~l~~~l~~-~~~gs~iivTTR~~~--------- 330 (1112)
..+...+.+ .-+||+||++..... .|. .+...+.. ...+.++|+||+...
T Consensus 82 -----------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 82 -----------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred -----------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHH
Confidence 011111222 238999999754321 333 23333221 123447888887532
Q ss_pred hhhhcCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHh
Q 047598 331 VASTMGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLG 393 (1112)
Q Consensus 331 v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1112)
+...+.....+.+.++++++...++...+-..... ..++..+.|++.+.|.|..+.-+.
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ----LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHH
Confidence 22233234678999999999999988765322211 223355778888999887666554
No 53
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=1.1e-05 Score=88.76 Aligned_cols=180 Identities=18% Similarity=0.219 Sum_probs=116.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccc-ccCCCCceeEEEEe-CCCCCHHH
Q 047598 179 AVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLN-AKDFKFDIKAWVCI-SDVFDVLS 256 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~~~~F~~~~wv~~-~~~~~~~~ 256 (1112)
.++|.+..++.+..++.. +.-.+...++|+.|+||||+|+.+++..--. ..+.|+|...|... +....+.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~-------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIK-------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hccCcHHHHHHHHHHHHc-------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH
Confidence 578989999999999864 2234577899999999999999988753211 01256666556542 22233322
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhhh-hh-
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHVA-ST- 334 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~-~~- 334 (1112)
.+++.+.+.... ..+++=++|+|+++..+...+..+...+.....++.+|++|.+.+.. ..
T Consensus 78 -ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 -IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred -HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 223333322211 12456677888887666678888988888777788988888765422 11
Q ss_pred cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHH
Q 047598 335 MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAK 390 (1112)
Q Consensus 335 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1112)
......+.+.++++++....+.+... .. . ++.+..++..++|.|..+.
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~-~~---~----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYN-DI---K----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhc-CC---C----HHHHHHHHHHcCCCHHHHH
Confidence 12346889999999998877765431 10 1 2235678899999886554
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.38 E-value=5.4e-09 Score=109.92 Aligned_cols=249 Identities=16% Similarity=0.152 Sum_probs=157.7
Q ss_pred CCceeEEEEcCcCCCCCCC---CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCC
Q 047598 801 FSKMEVLKLENCWNCTSLP---SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKG 877 (1112)
Q Consensus 801 l~~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 877 (1112)
+++|++|+|..|..++... .-..+++|++|+++.|+.+..-+...+.. ++..++.+...+|.+++.-..
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r----G~~~l~~~~~kGC~e~~le~l---- 260 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR----GCKELEKLSLKGCLELELEAL---- 260 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc----cchhhhhhhhcccccccHHHH----
Confidence 6788888888877665432 23468899999999988776633222221 255566666666655432111
Q ss_pred CCcCCcccCCCccceEeEecCCCCCCCCCCC-CCCcceeEEeEEEEeccCCcccCc--ccCCCCCCcCEEEEecCCCCcc
Q 047598 878 NDHADRVEIFPRLHKLSIMECPKLSGKLPEL-LPSLETLVVATFVIANCEKLEALP--NDMHRLNFLEHLRIGQCPSILS 954 (1112)
Q Consensus 878 ~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~-~~~L~~L~~~~L~~~~~~~l~~lp--~~l~~l~~L~~L~L~~~~~l~~ 954 (1112)
...-..++-+.++++.+|+.+++.--.. -..+..|+ .+..++|..+...+ .-..+.++|+.|-++.|+.++.
T Consensus 261 ---~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq--~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 261 ---LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ--VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD 335 (483)
T ss_pred ---HHHhccChHhhccchhhhccccchHHHHHhhhhhHhh--hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh
Confidence 0111346677888888898887532111 11223332 23456676654332 1234779999999999988765
Q ss_pred cCCC---CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCcccc---ccCcccccccCCCCccEEEecCCC
Q 047598 955 FPEE---GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVE---CFPNEEMGVMLPSSLTHLTIAGFK 1028 (1112)
Q Consensus 955 ~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~---~l~~~~~~~~~~~sL~~L~l~~~~ 1028 (1112)
.... ..++.|+.+++..|.....+.....-.+++.|++|.+++|....-. .+.. ...-...+..+.+.+|+
T Consensus 336 ~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~---~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 336 RGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS---SSCSLEGLEVLELDNCP 412 (483)
T ss_pred hhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh---ccccccccceeeecCCC
Confidence 5433 3478999999999976666655555678999999999998532111 1111 11224568899999999
Q ss_pred CC-----CcCCCCCCCCeEEeecCCCCCcCCC---CCCCCCccEE
Q 047598 1029 KL-----KKLSLMTSLEYLWIKNCPNLASFPE---LGLPSSLTQL 1065 (1112)
Q Consensus 1029 ~L-----~~l~~l~~L~~L~ls~c~~l~~lp~---~~~~~~L~~L 1065 (1112)
.+ +++..+++|+.+++-+|.....-+. ...+|++++.
T Consensus 413 ~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 413 LITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred CchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 87 4466899999999999988776542 2344554433
No 55
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=4.2e-07 Score=109.26 Aligned_cols=104 Identities=22% Similarity=0.271 Sum_probs=89.3
Q ss_pred cccEEEecccccc-cccccccCCCcCcEEEccccccc-cccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeec
Q 047598 593 RLRVLSLQRYYIG-ELLVSFEDLKLLRYLNLADTMIR-TLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIK 670 (1112)
Q Consensus 593 ~L~~L~L~~~~~~-~lp~~~~~l~~Lr~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~ 670 (1112)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999984 68889999999999999999997 899999999999999999996667899999999999999999
Q ss_pred CCCccccCCCCCCCC-CCCCccCeeee
Q 047598 671 GANLLREMPLGMKEL-KNLRTLSNFIV 696 (1112)
Q Consensus 671 ~~~~l~~lp~~i~~l-~~L~~L~~~~~ 696 (1112)
+|.+...+|..++.+ .++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 999878899887653 34555554444
No 56
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.36 E-value=3.1e-07 Score=105.67 Aligned_cols=197 Identities=28% Similarity=0.361 Sum_probs=131.4
Q ss_pred cEEEecccccccccccccCCCcCcEEEccccccccccccccCCC-CCcEEeecCCCCCcccCccccCCccccEEeecCCC
Q 047598 595 RVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLL-NLEILILRNCSRLKKLPSKMRNLINLHHLDIKGAN 673 (1112)
Q Consensus 595 ~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~ 673 (1112)
..|++..+.+...+..+..+..+..|++.+|.+..+|.....+. +|+.|++++| .+..+|..++.+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 45777777775555556677889999999999999999888885 9999999998 889998889999999999999999
Q ss_pred ccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCC
Q 047598 674 LLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQ 753 (1112)
Q Consensus 674 ~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 753 (1112)
+..+|...+.+++|+.|++.++.....+..+..+..|..+ .+..+..
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l--------------------------------~~~~N~~ 221 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEEL--------------------------------DLSNNSI 221 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhh--------------------------------hhcCCcc
Confidence 7888887778889999988887766664443333333333 3322210
Q ss_pred CCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEec
Q 047598 754 FDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQ 833 (1112)
Q Consensus 754 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 833 (1112)
...+..+.....+..+.+.++....++..+.. +++++.|++++|.+... +.++.+.+|+.|+++
T Consensus 222 -------------~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~--l~~l~~L~~s~n~i~~i-~~~~~~~~l~~L~~s 285 (394)
T COG4886 222 -------------IELLSSLSNLKNLSGLELSNNKLEDLPESIGN--LSNLETLDLSNNQISSI-SSLGSLTNLRELDLS 285 (394)
T ss_pred -------------eecchhhhhcccccccccCCceeeeccchhcc--ccccceecccccccccc-ccccccCccCEEecc
Confidence 01111112222333333444444444555544 66677777777665433 336677777777777
Q ss_pred CCCCceec
Q 047598 834 GLTKLKSI 841 (1112)
Q Consensus 834 ~~~~l~~i 841 (1112)
++......
T Consensus 286 ~n~~~~~~ 293 (394)
T COG4886 286 GNSLSNAL 293 (394)
T ss_pred Cccccccc
Confidence 65544333
No 57
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=5.5e-07 Score=71.55 Aligned_cols=56 Identities=30% Similarity=0.408 Sum_probs=35.6
Q ss_pred cccEEEeccccccccc-ccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCC
Q 047598 593 RLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNC 648 (1112)
Q Consensus 593 ~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~ 648 (1112)
+|++|++++|.+..+| ..|.++++|++|++++|.++.+|+ .|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4666666666666665 355666666666666666666543 4566666666666665
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=4.6e-05 Score=89.02 Aligned_cols=190 Identities=18% Similarity=0.141 Sum_probs=115.5
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc----------------CCCC
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK----------------DFKF 240 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----------------~~~F 240 (1112)
-..++|.+..++.|.+++.. +.-.+.+.++|..|+||||+|+.+.+...-... .+.|
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~-------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDG-------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCC
Confidence 34789999999999998864 122456679999999999999988775421100 0111
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCc
Q 047598 241 DIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNS 320 (1112)
Q Consensus 241 ~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 320 (1112)
..++++..+....+.+ .+++++.... .-..++.-++|||++.......|..+...+.......
T Consensus 88 ~DviEIDAas~rgVDd-IReLIe~a~~----------------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v 150 (830)
T PRK07003 88 VDYVEMDAASNRGVDE-MAALLERAVY----------------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV 150 (830)
T ss_pred ceEEEecccccccHHH-HHHHHHHHHh----------------ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCe
Confidence 1222322221111111 1112211110 0113455688999998877777888877766555677
Q ss_pred EEEEEcCChh-hhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch-HHHHHHhh
Q 047598 321 KMIITTRHSH-VAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP-LAAKSLGG 394 (1112)
Q Consensus 321 ~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~ 394 (1112)
++|+||++.. +... .+-...|.++.++.++..+.+.+.+...+.. ...+....|++.++|.. -|+.++-.
T Consensus 151 ~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~----id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA----FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred EEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8787777653 3222 1234689999999999999888766433221 12345678999998855 46555433
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=4.6e-06 Score=81.10 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=73.0
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHH
Q 047598 181 YGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKA 260 (1112)
Q Consensus 181 vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 260 (1112)
+|++..+..+...+.. ...+.+.|+|.+|+|||++|+.+++..... -..++++..............
T Consensus 1 ~~~~~~~~~i~~~~~~--------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~ 67 (151)
T cd00009 1 VGQEEAIEALREALEL--------PPPKNLLLYGPPGTGKTTLARAIANELFRP-----GAPFLYLNASDLLEGLVVAEL 67 (151)
T ss_pred CchHHHHHHHHHHHhC--------CCCCeEEEECCCCCCHHHHHHHHHHHhhcC-----CCCeEEEehhhhhhhhHHHHH
Confidence 4778888888888754 234688999999999999999999876311 234556665544332222111
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh---hhHHHHHhcccCC---CCCcEEEEEcCChh
Q 047598 261 LLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDY---SLWVDLKAPLLAA---APNSKMIITTRHSH 330 (1112)
Q Consensus 261 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~l~~~l~~~---~~gs~iivTTR~~~ 330 (1112)
+... ............++.++|+||++.... ..+..+...+... ..+..||+||....
T Consensus 68 ~~~~------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 68 FGHF------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hhhh------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 1100 001111223345678999999975322 2222223332221 35778888888644
No 60
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.33 E-value=1.3e-06 Score=93.32 Aligned_cols=291 Identities=19% Similarity=0.198 Sum_probs=185.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCC-ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKF-DIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLK 283 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 283 (1112)
...|.+.++|.|||||||++-.+.. .+ ..| +.+.++....-.+...+.-.....++....+. +.....+.
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~-----~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~ 82 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AA-----SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLV 82 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-Hh-----hhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHH
Confidence 3468999999999999999999887 33 335 45556666666666666666666676554322 12233455
Q ss_pred HHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhhhhhcCCCceeeCCCCChH-hHHHHHHHhHhCC
Q 047598 284 TAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHVASTMGPIKHYNLKRLLDE-DCWSIFIKHAYES 362 (1112)
Q Consensus 284 ~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~ 362 (1112)
....++|.++|+||.... .+.-..+...+..+.+.-.|+.|+|..... .+..++.+.+|+.. ++.++|...+...
T Consensus 83 ~~~~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~ 158 (414)
T COG3903 83 RRIGDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLV 158 (414)
T ss_pred HHHhhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHh
Confidence 666788999999998432 122233444555556666889999875432 34456777778765 7899998776543
Q ss_pred CCC-CCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCCCHHHHHHHHhccccCC------CC--CCCchHHHHHHhcCCc
Q 047598 363 RSL-KAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTTRCDLWEDILDSKIWDL------PQ--QSGILPVLRLSYHHLP 433 (1112)
Q Consensus 363 ~~~-~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~l~~~~~~~------~~--~~~i~~~l~~sy~~L~ 433 (1112)
... .-.........+|.++.+|.|++|...++..+.-...+....++.....+ .. +....+.+.+||.-|.
T Consensus 159 ~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 159 ALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred ccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 322 11122233568899999999999999999998876555544443311111 11 4567889999999999
Q ss_pred hHHHHHHhHhhcCCCCceechHHHHHHHHhCCcccccCCCchHHHHHHHHHHHHhhCCccccccC-CCccceechhHHHH
Q 047598 434 SYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGSQCFHDLVSRSIFQPSSR-NSCKFVMHDLVHDL 512 (1112)
Q Consensus 434 ~~~k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-~~~~~~~H~lv~~~ 512 (1112)
...+.-|-.++.|...+.-. ...|.+-|--.. .........+..+++.+++..... +...|+.-+-++.|
T Consensus 239 gwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Y 309 (414)
T COG3903 239 GWERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRY 309 (414)
T ss_pred hHHHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999998877544 233444332210 112233444678888888754432 23345555555655
Q ss_pred HHHhh
Q 047598 513 AQLVS 517 (1112)
Q Consensus 513 ~~~~~ 517 (1112)
+..+.
T Consensus 310 alaeL 314 (414)
T COG3903 310 ALAEL 314 (414)
T ss_pred HHHHH
Confidence 54443
No 61
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2.6e-05 Score=87.40 Aligned_cols=183 Identities=16% Similarity=0.105 Sum_probs=109.2
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccC----------------CCCc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKD----------------FKFD 241 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~----------------~~F~ 241 (1112)
..++|.+..++.+...+.. +.-...+.++|+.|+||||+|+.+.+........ +.+.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~-------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~ 88 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSL-------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCL 88 (363)
T ss_pred hhccChHHHHHHHHHHHHc-------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 4688999999999888865 1234577899999999999999998764311000 0011
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcE
Q 047598 242 IKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSK 321 (1112)
Q Consensus 242 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 321 (1112)
...++..+....+. ..+++++.+... -..+++-++|+|++.......++.+...+.......+
T Consensus 89 d~~~~~~~~~~~v~-~ir~i~~~~~~~----------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 89 DLIEIDAASRTKVE-EMREILDNIYYS----------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred ceEEecccccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11122111111111 111222111100 0124556999999987765667777776665555667
Q ss_pred EEEEcCCh-hhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHH
Q 047598 322 MIITTRHS-HVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLA 388 (1112)
Q Consensus 322 iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1112)
+|++|.+. .+... .+....+++.+++.++..+.+...+...+.. ..++.+..|++.++|.|-.
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~----i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID----TDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHH
Confidence 77766543 33322 2234678999999999988887766433211 1233567789999998753
No 62
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.31 E-value=2.1e-05 Score=88.50 Aligned_cols=195 Identities=16% Similarity=0.134 Sum_probs=107.0
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCc-eeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFD-IKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~ 256 (1112)
..++|++..++.+..++.. +....+.++|+.|+||||+|+.+.+..... .+. ..+.++++...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~--------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~----~~~~~~~~i~~~~~~~~-- 80 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS--------PNLPHLLVQGPPGSGKTAAVRALARELYGD----PWENNFTEFNVADFFDQ-- 80 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC--------CCCceEEEECCCCCCHHHHHHHHHHHhcCc----ccccceEEechhhhhhc--
Confidence 5688999999999888854 233457899999999999999998765311 111 1233333321100
Q ss_pred HHHHHH------HHhcCC-CCCCCChHHHHHHHHHH---h--CCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEE
Q 047598 257 ISKALL------ESITRK-PCHLNTLNEVQVDLKTA---V--DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMII 324 (1112)
Q Consensus 257 ~~~~il------~~l~~~-~~~~~~~~~~~~~l~~~---l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 324 (1112)
....+. ..++.. .......+.....+... . .+.+-+||+||+..........+...+......+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il 160 (337)
T PRK12402 81 GKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFII 160 (337)
T ss_pred chhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEE
Confidence 000000 000000 00001111111111111 1 23455899999976544444445554444445577888
Q ss_pred EcCCh-hhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHH
Q 047598 325 TTRHS-HVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAK 390 (1112)
Q Consensus 325 TTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1112)
||... .+.... .....+.+.+++.++..+++...+...+.. ...+..+.+++.++|.+-.+.
T Consensus 161 ~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 161 ATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred EeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 77543 222221 223568889999999988888866433321 223456788888888765443
No 63
>PRK08727 hypothetical protein; Validated
Probab=98.30 E-value=1.9e-05 Score=82.55 Aligned_cols=148 Identities=17% Similarity=0.085 Sum_probs=89.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
..+.|+|..|+|||+|++++++..... ...++++++.+. ...+. . .+ +.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~-----~~~~~y~~~~~~------~~~~~--------------~---~~-~~l- 91 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA-----GRSSAYLPLQAA------AGRLR--------------D---AL-EAL- 91 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-----CCcEEEEeHHHh------hhhHH--------------H---HH-HHH-
Confidence 469999999999999999998864322 234556664321 11111 0 11 111
Q ss_pred CCcEEEEEeCCCCCC-hhhHHHHHhcccC--CCCCcEEEEEcCCh---------hhhhhcCCCceeeCCCCChHhHHHHH
Q 047598 288 GKRFLLVLDDVWNED-YSLWVDLKAPLLA--AAPNSKMIITTRHS---------HVASTMGPIKHYNLKRLLDEDCWSIF 355 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf 355 (1112)
.+.-+||+||+.... ...|......+.+ ...|..||+|++.. ++.+.+.....+++++++.++-.+++
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL 171 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVL 171 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHH
Confidence 123589999996432 1234432222222 12466799999843 23334445568999999999999999
Q ss_pred HHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHH
Q 047598 356 IKHAYESRSLKAHQISELFRKKVVGKCGGLPLAA 389 (1112)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1112)
.+++....- ..-++....|++.++|-.-.+
T Consensus 172 ~~~a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 172 RERAQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 987754322 122345677888888755443
No 64
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=2e-07 Score=93.56 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=25.7
Q ss_pred CCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeec
Q 047598 638 LNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 638 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~ 697 (1112)
+-|++|||++| .+..+..++.-+++++.|++++|.+ ..+ .++..|.+|+.|++++|.
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i-~~v-~nLa~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRI-RTV-QNLAELPQLQLLDLSGNL 340 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEeccccce-eee-hhhhhcccceEeecccch
Confidence 44445555554 4444444444445555555555542 222 124444444445444443
No 65
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3.8e-06 Score=96.95 Aligned_cols=190 Identities=19% Similarity=0.169 Sum_probs=112.3
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC-------
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD------- 250 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~------- 250 (1112)
..++|.+..++.|..++.. +.-...+.++|++|+||||+|+.+++..... +.+....|+|.+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~-------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~---~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQ-------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCS---GEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHhcChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHHhcc---CCCCCCCCcChhhHHHhcCC
Confidence 4689999999998888865 1234567999999999999999998765322 1111122222110
Q ss_pred CCCHHHHHHHHHHHhcCC-CCCCCChHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC
Q 047598 251 VFDVLSISKALLESITRK-PCHLNTLNEVQVDLKT-AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH 328 (1112)
Q Consensus 251 ~~~~~~~~~~il~~l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 328 (1112)
..++. .+... .....+..++...+.. -..+++-++|+|+++......+..+...+........+|++|..
T Consensus 84 h~dv~--------el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 84 HPDVL--------EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred CCceE--------EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 00000 00000 0000111122121211 12356678999999877666777887777665455565555543
Q ss_pred -hhhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHH
Q 047598 329 -SHVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAA 389 (1112)
Q Consensus 329 -~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1112)
..+...+ .....+.+.+++.++..+.+.+.+...+... .++....|++.++|.+--+
T Consensus 156 ~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 156 PEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 3333222 2346899999999999999988775433211 2345688999999988533
No 66
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.29 E-value=1.7e-05 Score=94.60 Aligned_cols=203 Identities=18% Similarity=0.146 Sum_probs=120.0
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCC---ceeEEEEeCCC---
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKF---DIKAWVCISDV--- 251 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F---~~~~wv~~~~~--- 251 (1112)
+.++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++..... ..+ ...-|+.+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~--------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~---~~~~~~~~~~fv~i~~~~l~ 222 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS--------PFPQHIILYGPPGVGKTTAARLALEEAKKL---KHTPFAEDAPFVEVDGTTLR 222 (615)
T ss_pred HhceeCcHHHHHHHHHHhc--------CCCCeEEEECCCCCCHHHHHHHHHHhhhhc---cCCcccCCCCeEEEechhcc
Confidence 3688999999998887743 234579999999999999999998765322 112 12335544321
Q ss_pred CCHHHHHHHH---------------HHHhcCCC----------------CCCCC-hHHHHHHHHHHhCCCcEEEEEeCCC
Q 047598 252 FDVLSISKAL---------------LESITRKP----------------CHLNT-LNEVQVDLKTAVDGKRFLLVLDDVW 299 (1112)
Q Consensus 252 ~~~~~~~~~i---------------l~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~ 299 (1112)
.+...+...+ +...+... ++... ....+..+.+.++++++.++-|+.|
T Consensus 223 ~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~ 302 (615)
T TIGR02903 223 WDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYD 302 (615)
T ss_pred CCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceec
Confidence 1222221111 11111100 01111 1235677888888999999988887
Q ss_pred CCChhhHHHHHhcccCCCCCcEEEE--EcCChhhh-hhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHH
Q 047598 300 NEDYSLWVDLKAPLLAAAPNSKMII--TTRHSHVA-STM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFR 375 (1112)
Q Consensus 300 ~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v~-~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~ 375 (1112)
..+...|..+...+....+...|+| ||++.... ..+ .....+.+.+++.+|.++++.+.+-.... . ..+++.
T Consensus 303 ~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~---ls~eal 378 (615)
T TIGR02903 303 PDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-H---LAAGVE 378 (615)
T ss_pred cCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-C---CCHHHH
Confidence 7766778877766665555555555 56654321 111 12246788999999999999987643221 1 112344
Q ss_pred HHHHhhcCCchHHHHHHhhh
Q 047598 376 KKVVGKCGGLPLAAKSLGGL 395 (1112)
Q Consensus 376 ~~i~~~c~glPlai~~~~~~ 395 (1112)
+.|.+.+..-+-|+..++..
T Consensus 379 ~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 379 ELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHCCCcHHHHHHHHHHH
Confidence 55666555445666555433
No 67
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=4e-05 Score=84.69 Aligned_cols=205 Identities=17% Similarity=0.206 Sum_probs=130.5
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHH
Q 047598 180 VYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISK 259 (1112)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 259 (1112)
+.+|+++.+++...|... .. + ....-+.|+|..|+|||+.++.|.+....... ..+ +++|.+-...+..+++.
T Consensus 19 l~~Re~ei~~l~~~l~~~-~~--~-~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~--~~~-~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 19 LPHREEEINQLASFLAPA-LR--G-ERPSNIIIYGPTGTGKTATVKFVMEELEESSA--NVE-VVYINCLELRTPYQVLS 91 (366)
T ss_pred ccccHHHHHHHHHHHHHH-hc--C-CCCccEEEECCCCCCHhHHHHHHHHHHHhhhc--cCc-eEEEeeeeCCCHHHHHH
Confidence 889999999999888652 11 1 12223889999999999999999998764421 111 78889999999999999
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHHHhC--CCcEEEEEeCCCCCChhhHHHHHhcccCCC-CCcEEEE--EcCChhhhh-
Q 047598 260 ALLESITRKPCHLNTLNEVQVDLKTAVD--GKRFLLVLDDVWNEDYSLWVDLKAPLLAAA-PNSKMII--TTRHSHVAS- 333 (1112)
Q Consensus 260 ~il~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~iiv--TTR~~~v~~- 333 (1112)
.|+.+++..........+....+.+.+. ++.++||||+++.-....-+.+...+.... .+++|+| .+-+.....
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 9999998655555666777777777764 578999999996432111122222222222 2454433 344333222
Q ss_pred -------hcCCCceeeCCCCChHhHHHHHHHhHhCCCC--CCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 334 -------TMGPIKHYNLKRLLDEDCWSIFIKHAYESRS--LKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 334 -------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~--~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
..+. ..+...|-+.+|-..++..++-..-. ...+...+-+|...++..|-.=.||..+
T Consensus 172 ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 172 LDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2233 33788999999999999888743321 1233344444444444444444555444
No 68
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.28 E-value=2.4e-05 Score=77.64 Aligned_cols=180 Identities=19% Similarity=0.207 Sum_probs=94.4
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
-.+|||.+.-++.+.-++..... ......-+.+||++|+||||||.-+.+..... |. +.+.+....
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~---r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~-----~~---~~sg~~i~k--- 88 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK---RGEALDHMLFYGPPGLGKTTLARIIANELGVN-----FK---ITSGPAIEK--- 88 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC---TTS---EEEEESSTTSSHHHHHHHHHHHCT-------EE---EEECCC--S---
T ss_pred HHHccCcHHHHhhhHHHHHHHHh---cCCCcceEEEECCCccchhHHHHHHHhccCCC-----eE---eccchhhhh---
Confidence 45799999888876554432110 23456788999999999999999999986533 32 222211111
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccC--------CCCCc--------
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLA--------AAPNS-------- 320 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~gs-------- 320 (1112)
..++...+.. + +++-+|++|.+..-...+-+.+..++-+ .++++
T Consensus 89 ------------------~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 89 ------------------AGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp ------------------CHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred ------------------HHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1112222211 2 2455778888865443222223322211 12222
Q ss_pred ---EEEEEcCChhhhhhcCCC--ceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhh
Q 047598 321 ---KMIITTRHSHVASTMGPI--KHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGG 394 (1112)
Q Consensus 321 ---~iivTTR~~~v~~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 394 (1112)
-|=.|||...+......- -..+++..+.+|-.++..+.+..-.. ...++.+.+|++.|.|-|--..-+-.
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 234477776555444322 34579999999999999887754332 33456789999999999965444433
No 69
>PF13173 AAA_14: AAA domain
Probab=98.27 E-value=3.4e-06 Score=79.06 Aligned_cols=120 Identities=22% Similarity=0.252 Sum_probs=79.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
.+++.|.|+-|+||||++++++++.. ....++++++.+....... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~------~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL------PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc------ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhh
Confidence 36899999999999999999997653 1234556665544321100 000 222333334
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhhhhh------cCCCceeeCCCCChHhH
Q 047598 287 DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHVAST------MGPIKHYNLKRLLDEDC 351 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~------~~~~~~~~l~~L~~~~~ 351 (1112)
..++.+|+||++... ..|......+.+..+..+|++|+........ .+....+++.||+-.|.
T Consensus 59 ~~~~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 447889999999654 5788877777776667899999998766532 12234678999987763
No 70
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.8e-05 Score=89.80 Aligned_cols=180 Identities=13% Similarity=0.105 Sum_probs=111.2
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc----------------cCCCC
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA----------------KDFKF 240 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----------------~~~~F 240 (1112)
-..++|.+..+..|..++.. +.-...+.++|+.|+||||+|+.+.+..--.. ..+.|
T Consensus 14 FddVIGQe~vv~~L~~aI~~-------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 14 FNELVGQNHVSRALSSALER-------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCC
Confidence 35789999999999999865 12246888999999999999999887642110 00111
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH----HhCCCcEEEEEeCCCCCChhhHHHHHhcccCC
Q 047598 241 DIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKT----AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAA 316 (1112)
Q Consensus 241 ~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (1112)
.-++.+..+.. ...++....+.. -..+++-++|+|++...+...+..+...+...
T Consensus 87 pDviEIDAAs~---------------------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP 145 (702)
T PRK14960 87 IDLIEIDAASR---------------------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP 145 (702)
T ss_pred CceEEeccccc---------------------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 11122222111 122222211111 12356678999999877666677777766655
Q ss_pred CCCcEEEEEcCChh-hhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHH
Q 047598 317 APNSKMIITTRHSH-VAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLA 388 (1112)
Q Consensus 317 ~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1112)
..+.++|++|.+.. +... ......+++++++.++..+.+.+.+...+.. ...+....|++.++|.+-.
T Consensus 146 P~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~----id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 146 PEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA----ADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred CCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHH
Confidence 55667777776542 2211 2334689999999999988887766443221 2233567789999997743
No 71
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.25 E-value=1.2e-06 Score=69.70 Aligned_cols=58 Identities=36% Similarity=0.503 Sum_probs=51.1
Q ss_pred CcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccCc-cccCCccccEEeecCCC
Q 047598 615 KLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLPS-KMRNLINLHHLDIKGAN 673 (1112)
Q Consensus 615 ~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~ 673 (1112)
++|++|++++|.+..+|+ .|..+++|++|++++| .+..+|. .|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999986 6789999999999998 6666664 78999999999999986
No 72
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=5e-05 Score=78.53 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=88.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
.+.+.|+|..|+|||+|++.+++.... .+++.. .+...++.. +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~----------~~i~~~------~~~~~~~~~---------------------~ 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA----------LLIHPN------EIGSDAANA---------------------A 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC----------EEecHH------HcchHHHHh---------------------h
Confidence 357899999999999999999875421 123221 111111111 1
Q ss_pred CCCcEEEEEeCCCCC--ChhhHHHHHhcccCCCCCcEEEEEcCC---------hhhhhhcCCCceeeCCCCChHhHHHHH
Q 047598 287 DGKRFLLVLDDVWNE--DYSLWVDLKAPLLAAAPNSKMIITTRH---------SHVASTMGPIKHYNLKRLLDEDCWSIF 355 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~iivTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf 355 (1112)
.+ -+|++||+... +...+..+...+.. .|..||+|++. +++.+.+.....+++++++.++-.+++
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 11 27888999542 22333334333332 36679998873 345556667789999999999999999
Q ss_pred HHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHH
Q 047598 356 IKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKS 391 (1112)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1112)
.+++-...- ..-+++..-|++.+.|..-++..
T Consensus 163 ~~~~~~~~~----~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 163 FKLFADRQL----YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHHhhhhHHHHHH
Confidence 988754322 12244667788888887766654
No 73
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=3.7e-05 Score=91.64 Aligned_cols=186 Identities=16% Similarity=0.143 Sum_probs=114.3
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc----------------CCCCc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK----------------DFKFD 241 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----------------~~~F~ 241 (1112)
..++|.+..+..|.+++.. +.-...+.++|..|+||||+|+.+++..--... .+.|.
T Consensus 16 ddIIGQe~Iv~~LknaI~~-------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~ 88 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQ-------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFV 88 (944)
T ss_pred HHhcCcHHHHHHHHHHHHh-------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCc
Confidence 4689999999999988865 122345689999999999999999876532100 00111
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCc
Q 047598 242 IKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKT-AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNS 320 (1112)
Q Consensus 242 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 320 (1112)
.++++.......+. ..+.+.+ .+.. -..+++-++|||++.......+..+...+-......
T Consensus 89 DviEidAas~~kVD-dIReLie-----------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~v 150 (944)
T PRK14949 89 DLIEVDAASRTKVD-DTRELLD-----------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHV 150 (944)
T ss_pred eEEEeccccccCHH-HHHHHHH-----------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCe
Confidence 12222211111111 1122222 2211 124677899999998877777777777665544566
Q ss_pred EEEEEcCCh-hhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH-HHHHH
Q 047598 321 KMIITTRHS-HVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL-AAKSL 392 (1112)
Q Consensus 321 ~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 392 (1112)
++|++|.+. .+... ......|.+.+|+.++..+.+.+.+-.... ....+....|++.++|.|- |+.++
T Consensus 151 rFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 151 KFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 766666543 34322 223478999999999999988876643221 1223456889999999874 44443
No 74
>PTZ00202 tuzin; Provisional
Probab=98.23 E-value=7.3e-05 Score=81.09 Aligned_cols=171 Identities=15% Similarity=0.219 Sum_probs=103.9
Q ss_pred CCCCCCCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC
Q 047598 171 SSSVPTERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD 250 (1112)
Q Consensus 171 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~ 250 (1112)
...|++.+.|+||+.+..++...|...+ ....+++.|+|++|+|||||++.+..... + .+++. .
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d-----~~~privvLtG~~G~GKTTLlR~~~~~l~-------~--~qL~v--N 318 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLD-----TAHPRIVVFTGFRGCGKSSLCRSAVRKEG-------M--PAVFV--D 318 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccC-----CCCceEEEEECCCCCCHHHHHHHHHhcCC-------c--eEEEE--C
Confidence 4456677899999999999999886422 22346999999999999999999986532 2 12222 2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHH-hC-CCcEEEEEeCCCCCC-hhhHHHHHhcccCCCCCcEEEEE
Q 047598 251 VFDVLSISKALLESITRKPCHL--NTLNEVQVDLKTA-VD-GKRFLLVLDDVWNED-YSLWVDLKAPLLAAAPNSKMIIT 325 (1112)
Q Consensus 251 ~~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~l~~~-l~-~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivT 325 (1112)
..+..++++.++.+++...... .-.+.+.+.+.+. -. +++.+||+-=-+..+ ...+.+.. .+.....-|.|++-
T Consensus 319 prg~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~e 397 (550)
T PTZ00202 319 VRGTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIE 397 (550)
T ss_pred CCCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeee
Confidence 2267999999999999743221 1123333333322 23 677777765332221 12232222 23334455677765
Q ss_pred cCChhhhhh---cCCCceeeCCCCChHhHHHHHHHh
Q 047598 326 TRHSHVAST---MGPIKHYNLKRLLDEDCWSIFIKH 358 (1112)
Q Consensus 326 TR~~~v~~~---~~~~~~~~l~~L~~~~~~~Lf~~~ 358 (1112)
--.+.+.-. ..--..|.+..++.++|.+...+.
T Consensus 398 vpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 398 VPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 444332211 112356888999999988766553
No 75
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.20 E-value=2.3e-06 Score=86.83 Aligned_cols=51 Identities=22% Similarity=0.390 Sum_probs=34.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccc
Q 047598 179 AVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLN 234 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 234 (1112)
.|+||+++.+++...+.. . .....+.+.|+|.+|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~-~----~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDA-A----QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGG-T----SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH-H----HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 2 23456899999999999999999998877543
No 76
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.20 E-value=2e-05 Score=81.76 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=99.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKT 284 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 284 (1112)
+.+.-+.+||++|+||||||+.+.+..+.. . ..||..|....-..-.+.++++-.. ..
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~---S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~ 217 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKH---S----YRFVELSATNAKTNDVRDIFEQAQN---------------EK 217 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCC---c----eEEEEEeccccchHHHHHHHHHHHH---------------HH
Confidence 456778899999999999999999876543 2 3467777665555555555554321 12
Q ss_pred HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEE--EcCChhhh---hhcCCCceeeCCCCChHhHHHHHHHhH
Q 047598 285 AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMII--TTRHSHVA---STMGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 285 ~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v~---~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
.+.++|.+|++|.|..-+..+ --..+|....|+-++| ||.++..- .......++.+++|+.++-..++.+..
T Consensus 218 ~l~krkTilFiDEiHRFNksQ---QD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQ---QDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhh---hhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 456789999999995432111 1223555567877666 67766432 223455789999999999988887743
Q ss_pred h---CCCC---CCCc---hhHHHHHHHHHhhcCCch
Q 047598 360 Y---ESRS---LKAH---QISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 360 ~---~~~~---~~~~---~~~~~~~~~i~~~c~glP 386 (1112)
- .+.. .-+. .....+.+-++..|.|-.
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 2 2221 1111 122345566777788864
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=98.19 E-value=3.4e-05 Score=85.14 Aligned_cols=180 Identities=12% Similarity=0.128 Sum_probs=103.2
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCc-eeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFD-IKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~ 256 (1112)
..++|.+..++.+.+++.. +...-+.++|++|+||||+|+.+++...- ..|. .++-+..++..+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~--------~~~~~lll~Gp~G~GKTtla~~la~~l~~----~~~~~~~~eln~sd~~~~~- 79 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD--------GNMPNLILSGPPGTGKTTSILALAHELLG----PNYKEAVLELNASDDRGID- 79 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc--------CCCceEEEECCCCCCHHHHHHHHHHHHhc----ccCccceeeecccccccHH-
Confidence 4678988888888877644 22334679999999999999999876421 1121 11112222222221
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCCh-hhhhhc
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHS-HVASTM 335 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~ 335 (1112)
..+.+++.+...... .-.++.-++|+|+++.........+...+......+++|+++... .+....
T Consensus 80 ~vr~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L 146 (319)
T PLN03025 80 VVRNKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPI 146 (319)
T ss_pred HHHHHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhH
Confidence 222222221110000 002456799999998765544445555444434567777766543 221111
Q ss_pred -CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH
Q 047598 336 -GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL 387 (1112)
Q Consensus 336 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 387 (1112)
.....+++.++++++..+.+...+-..+..-+ .+....|++.++|..-
T Consensus 147 ~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 147 QSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMR 195 (319)
T ss_pred HHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 12357899999999998888877644322112 3356788899988653
No 78
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=5.8e-05 Score=86.84 Aligned_cols=192 Identities=16% Similarity=0.190 Sum_probs=110.6
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCce-eEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDI-KAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~-~~wv~~~~~~~~~~ 256 (1112)
..++|.+..+..+...+.. +.-..-+.++|+.|+||||+|+.+++..--.. .... .-+..+... .
T Consensus 21 ~dliGq~~vv~~L~~ai~~-------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~---~~~~~~~~~~C~~C----~ 86 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILN-------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA---LITENTTIKTCEQC----T 86 (507)
T ss_pred HHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCcc---ccccCcCcCCCCCC----h
Confidence 4688999999988887754 12235788999999999999999987653210 0000 000000000 0
Q ss_pred HHHHHHHHhcC-----CCCCCCChHHHHHHHHH----HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEE-Ec
Q 047598 257 ISKALLESITR-----KPCHLNTLNEVQVDLKT----AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMII-TT 326 (1112)
Q Consensus 257 ~~~~il~~l~~-----~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TT 326 (1112)
....+...... ........++....+.. -..+++-++|+|+++.-....|..+...+....+.+.+|+ ||
T Consensus 87 ~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 87 NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred HHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 00000000000 00011122222222211 1245677899999988777778888877766555666554 54
Q ss_pred CChhhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH
Q 047598 327 RHSHVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL 387 (1112)
Q Consensus 327 R~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 387 (1112)
+...+.... .....+++.+++.++..+.+...+...+..- ..+....|++.++|.+-
T Consensus 167 e~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i----e~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT----DIEALRIIAYKSEGSAR 224 (507)
T ss_pred ChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHH
Confidence 544544332 2346789999999999999988775433211 23345778899998764
No 79
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.17 E-value=6.6e-05 Score=83.70 Aligned_cols=179 Identities=15% Similarity=0.126 Sum_probs=104.9
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEe--CCCCCHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCI--SDVFDVL 255 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~--~~~~~~~ 255 (1112)
..++|++..++.+..++.. +....+.|+|..|+||||+|+.+.+..... .+. ..++.+ +......
T Consensus 17 ~~~~g~~~~~~~l~~~i~~--------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~----~~~-~~~i~~~~~~~~~~~ 83 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKE--------KNMPHLLFAGPPGTGKTTAALALARELYGE----DWR-ENFLELNASDERGID 83 (319)
T ss_pred HHhcCcHHHHHHHHHHHhC--------CCCCeEEEECCCCCCHHHHHHHHHHHHcCC----ccc-cceEEeccccccchH
Confidence 4588999999999998854 223357999999999999999998865321 111 112222 2221111
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCCh-hhhhh
Q 047598 256 SISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHS-HVAST 334 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~ 334 (1112)
..+..+..+....+ .-...+-++++|++..........+...+......+++|+++... .+...
T Consensus 84 -~~~~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~ 148 (319)
T PRK00440 84 -VIRNKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDP 148 (319)
T ss_pred -HHHHHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchh
Confidence 11111111111000 001235689999987655445555665555444556777776432 22111
Q ss_pred -cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHH
Q 047598 335 -MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLA 388 (1112)
Q Consensus 335 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1112)
......+++.+++.++....+...+...+.. ..++....+++.++|.+--
T Consensus 149 l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~----i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 149 IQSRCAVFRFSPLKKEAVAERLRYIAENEGIE----ITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred HHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHH
Confidence 1123468999999999988888776543321 1233567888999987754
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.17 E-value=3.6e-05 Score=80.46 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=90.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
..+.|+|+.|+|||+|++.+++..... -..+.++++..... ...+..+.+ .
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~-----~~~v~y~~~~~~~~--------------------~~~~~~~~~----~ 96 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQR-----GRAVGYVPLDKRAW--------------------FVPEVLEGM----E 96 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEEHHHHhh--------------------hhHHHHHHh----h
Confidence 578999999999999999998864321 23445565532110 001111111 1
Q ss_pred CCcEEEEEeCCCCCC-hhhHHHHH-hcccC-CCCC-cEEEEEcCCh---------hhhhhcCCCceeeCCCCChHhHHHH
Q 047598 288 GKRFLLVLDDVWNED-YSLWVDLK-APLLA-AAPN-SKMIITTRHS---------HVASTMGPIKHYNLKRLLDEDCWSI 354 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~-~~~~~~l~-~~l~~-~~~g-s~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~L 354 (1112)
. --+|++||+.... ...|+... ..+.. ...| .++|+||+.. ++.+.+....+++++++++++-.++
T Consensus 97 ~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 97 Q-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQA 175 (235)
T ss_pred h-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHH
Confidence 1 2378999996432 13454322 22211 1123 4799999754 3445556678899999999999999
Q ss_pred HHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 355 FIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 355 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
+.+++....- ..-+++..-|++.+.|..-++..+
T Consensus 176 l~~~a~~~~~----~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 176 LQLRARLRGF----ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHHcCC----CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 8876643321 222446778888888765544433
No 81
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=6.6e-05 Score=86.54 Aligned_cols=182 Identities=15% Similarity=0.103 Sum_probs=111.6
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc----------C---------
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK----------D--------- 237 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----------~--------- 237 (1112)
-..+||.+..+..|.+++.. +.-...+.++|..|+||||+|+.+.+..--... +
T Consensus 15 FddVIGQe~vv~~L~~al~~-------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I 87 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQ-------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEI 87 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHh-------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHH
Confidence 34789999999999999865 123456789999999999999988775431100 0
Q ss_pred --CCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH----HhCCCcEEEEEeCCCCCChhhHHHHHh
Q 047598 238 --FKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKT----AVDGKRFLLVLDDVWNEDYSLWVDLKA 311 (1112)
Q Consensus 238 --~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~ 311 (1112)
+.|..++++..... ...++..+.+.. -..++.-++|+|++...+...++.+..
T Consensus 88 ~aG~hpDviEIdAas~---------------------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLK 146 (700)
T PRK12323 88 DAGRFVDYIEMDAASN---------------------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLK 146 (700)
T ss_pred HcCCCCcceEeccccc---------------------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHH
Confidence 01111122222111 122222222211 124566799999998877777877777
Q ss_pred cccCCCCCcEEEEEcC-Chhhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHH
Q 047598 312 PLLAAAPNSKMIITTR-HSHVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAA 389 (1112)
Q Consensus 312 ~l~~~~~gs~iivTTR-~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1112)
.+..-..+.++|++|. ...+...+ +-...+.+..++.++..+.+.+.+...+... ..+....|++.++|.|.-.
T Consensus 147 TLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~----d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 147 TLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH----EVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred hhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 7655445666555554 44443222 2346789999999999988887654322111 1234577899999988644
Q ss_pred H
Q 047598 390 K 390 (1112)
Q Consensus 390 ~ 390 (1112)
.
T Consensus 223 L 223 (700)
T PRK12323 223 L 223 (700)
T ss_pred H
Confidence 3
No 82
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=6.6e-05 Score=86.89 Aligned_cols=187 Identities=17% Similarity=0.124 Sum_probs=111.8
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc----------------cCCCCc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA----------------KDFKFD 241 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----------------~~~~F~ 241 (1112)
..++|.+..+..+...+.. +.-...+.++|+.|+||||+|+.+++...-.. ..+.|.
T Consensus 16 ~diiGq~~~v~~L~~~i~~-------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~ 88 (546)
T PRK14957 16 AEVAGQQHALNSLVHALET-------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFI 88 (546)
T ss_pred HHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCC
Confidence 4688999999999988864 12345678999999999999999987432100 001122
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCc
Q 047598 242 IKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKT-AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNS 320 (1112)
Q Consensus 242 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 320 (1112)
..+++.......+. +..++...+.. -..+++-++|+|++.......++.+...+......+
T Consensus 89 dlieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 89 DLIEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred ceEEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 22333222222221 11222222221 123567799999998776667777777776654566
Q ss_pred EEEE-EcCChhhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch-HHHHHHh
Q 047598 321 KMII-TTRHSHVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP-LAAKSLG 393 (1112)
Q Consensus 321 ~iiv-TTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 393 (1112)
.+|+ ||....+... ......+++.+++.++..+.+.+.+-..+. ...+.....|++.++|.+ -|+..+-
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6555 4443334322 223478999999999988777765433221 112334577899999965 4555543
No 83
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.15 E-value=6.8e-06 Score=89.84 Aligned_cols=39 Identities=28% Similarity=0.404 Sum_probs=22.8
Q ss_pred CCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceecC
Q 047598 801 FSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSIG 842 (1112)
Q Consensus 801 l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~ 842 (1112)
+.+++.|++++|. +..+|.+ .++|+.|.+++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~-L~sLP~L--P~sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 51 ARASGRLYIKDCD-IESLPVL--PNELTEITIENCNNLTTLP 89 (426)
T ss_pred hcCCCEEEeCCCC-CcccCCC--CCCCcEEEccCCCCcccCC
Confidence 4667777777773 3444421 2357777777766655544
No 84
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=6.3e-08 Score=99.92 Aligned_cols=254 Identities=20% Similarity=0.202 Sum_probs=132.8
Q ss_pred cccCCcccEEEeccccccc-----ccccccCCCcCcEEEccccc----ccccccc-------ccCCCCCcEEeecCCCCC
Q 047598 588 LPKFKRLRVLSLQRYYIGE-----LLVSFEDLKLLRYLNLADTM----IRTLPES-------TNSLLNLEILILRNCSRL 651 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~-----lp~~~~~l~~Lr~L~Ls~n~----i~~lp~~-------i~~L~~L~~L~L~~~~~l 651 (1112)
...+..+..++|++|.++. +-..+.+.++||.-++|+-- ..++|+. +-..++|++||||.|-.-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4566788889999998742 34556777788888888631 2244543 334457777777776322
Q ss_pred cccCc----cccCCccccEEeecCCCccccCCCC-CCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCC
Q 047598 652 KKLPS----KMRNLINLHHLDIKGANLLREMPLG-MKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENV 726 (1112)
Q Consensus 652 ~~lp~----~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~ 726 (1112)
..-+. -+.++..|++|.|.+|. +....-. ++. -|..| .
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l-----------------~----------------- 148 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFEL-----------------A----------------- 148 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHH-----------------H-----------------
Confidence 22222 23455666666666665 2111000 000 01111 0
Q ss_pred CChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCC-----CCccCCCCC
Q 047598 727 NDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARF-----PSWLGDPLF 801 (1112)
Q Consensus 727 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l 801 (1112)
......+.+.|+.+....|...... ....-..++.++.|+.+.+..|.+..- -..+ ..+
T Consensus 149 ------~~kk~~~~~~Lrv~i~~rNrlen~g--------a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal--~~~ 212 (382)
T KOG1909|consen 149 ------VNKKAASKPKLRVFICGRNRLENGG--------ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEAL--EHC 212 (382)
T ss_pred ------HHhccCCCcceEEEEeecccccccc--------HHHHHHHHHhccccceEEEecccccCchhHHHHHHH--HhC
Confidence 0011233345555555544432222 112222334456666666666544211 0111 237
Q ss_pred CceeEEEEcCcCCCCC----CC-CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccC
Q 047598 802 SKMEVLKLENCWNCTS----LP-SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIK 876 (1112)
Q Consensus 802 ~~L~~L~L~~~~~~~~----l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 876 (1112)
++|+.|+|.+|.+... +. .+..+++|+.|++++|. ++.-+...+.......+|+|+.|.+.++..-.. .
T Consensus 213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d-----a 286 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRD-----A 286 (382)
T ss_pred CcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHH-----H
Confidence 8899999999877532 11 56778889999999885 333232222222233378888888877321000 0
Q ss_pred CCCcCCcccCCCccceEeEecCCCC
Q 047598 877 GNDHADRVEIFPRLHKLSIMECPKL 901 (1112)
Q Consensus 877 ~~~~~~~~~~~p~L~~L~l~~c~~L 901 (1112)
...........|.|+.|+|++ |++
T Consensus 287 ~~~la~~~~ek~dL~kLnLng-N~l 310 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNG-NRL 310 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCc-ccc
Confidence 001112234578899999998 566
No 85
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=0.00013 Score=83.77 Aligned_cols=204 Identities=16% Similarity=0.159 Sum_probs=113.9
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccC----------------CCCc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKD----------------FKFD 241 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~----------------~~F~ 241 (1112)
..++|.+.....+...+.. +.-...+.++|++|+||||+|+.+.+........ +.+.
T Consensus 14 ~divGq~~i~~~L~~~i~~-------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~ 86 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKK-------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFM 86 (472)
T ss_pred HHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCC
Confidence 4689998888888777754 1223567899999999999999998754211000 0011
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcE
Q 047598 242 IKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSK 321 (1112)
Q Consensus 242 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 321 (1112)
.++.+..+...++..+ +.+.+.... .-..+++-++|+|++..-.....+.+...+........
T Consensus 87 dv~el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 87 DVIELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred ccEEEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 1122222211111111 122111110 01235667999999965544455556665554334445
Q ss_pred EEEEcCC-hhhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcC-CchHHHHHHhhhhc-
Q 047598 322 MIITTRH-SHVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCG-GLPLAAKSLGGLLR- 397 (1112)
Q Consensus 322 iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~-glPlai~~~~~~l~- 397 (1112)
+|++|.+ ..+.... .....+.+.+++.++....+.+.+...+.. ..++....|++.++ +++.|+..+-.+..
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~----i~~eal~~Ia~~s~GdlR~aln~Le~l~~~ 225 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE----IDREALSFIAKRASGGLRDALTMLEQVWKF 225 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4444443 3333322 234678999999999988888776433221 12335677888775 45777777765432
Q ss_pred --CC-CHHHHHHHHh
Q 047598 398 --TT-RCDLWEDILD 409 (1112)
Q Consensus 398 --~~-~~~~w~~~l~ 409 (1112)
++ +.+....++.
T Consensus 226 ~~~~It~e~V~~~l~ 240 (472)
T PRK14962 226 SEGKITLETVHEALG 240 (472)
T ss_pred cCCCCCHHHHHHHHc
Confidence 12 5555555553
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.11 E-value=2e-05 Score=94.66 Aligned_cols=171 Identities=21% Similarity=0.260 Sum_probs=95.6
Q ss_pred cceecchhhHH---HHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCH
Q 047598 178 RAVYGRDKDKA---RILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDV 254 (1112)
Q Consensus 178 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~ 254 (1112)
..|+|.+..+. .+...+.. +....+.++|++|+||||+|+.+++... ..|. .++.....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~--------~~~~slLL~GPpGtGKTTLA~aIA~~~~-----~~f~-----~lna~~~~ 89 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA--------DRVGSLILYGPPGVGKTTLARIIANHTR-----AHFS-----SLNAVLAG 89 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc--------CCCceEEEECCCCCCHHHHHHHHHHHhc-----Ccce-----eehhhhhh
Confidence 46889887764 45555533 3345678999999999999999998653 2331 11111000
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh--CCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEE--cCChh
Q 047598 255 LSISKALLESITRKPCHLNTLNEVQVDLKTAV--DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIIT--TRHSH 330 (1112)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--TR~~~ 330 (1112)
. .+..+........+ .+++.+|||||++.-....++.+...+. .|+.++|+ |.+..
T Consensus 90 i-----------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~ 149 (725)
T PRK13341 90 V-----------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPY 149 (725)
T ss_pred h-----------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChH
Confidence 0 01111111221111 2467899999997665555555554332 35555553 44331
Q ss_pred --hhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCC---CCCCchhHHHHHHHHHhhcCCch
Q 047598 331 --VAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESR---SLKAHQISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 331 --v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~---~~~~~~~~~~~~~~i~~~c~glP 386 (1112)
+... ......+.+++|+.++...++.+.+-... ........++....|++.+.|..
T Consensus 150 ~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 150 FEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1111 12245789999999999999887653100 00111222345677888887753
No 87
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.10 E-value=5.1e-05 Score=79.51 Aligned_cols=152 Identities=19% Similarity=0.118 Sum_probs=86.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
.+.+.|+|..|+|||+||+.+++..... .. ...+++...... . + ...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~----~~-~~~~i~~~~~~~------~----~------------------~~~ 88 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYG----GR-NARYLDAASPLL------A----F------------------DFD 88 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC----CC-cEEEEehHHhHH------H----H------------------hhc
Confidence 4578899999999999999999864211 11 233444332110 0 0 011
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHhcccCC-CCCc-EEEEEcCChhhhh--------hcCCCceeeCCCCChHhHHHHHH
Q 047598 287 DGKRFLLVLDDVWNEDYSLWVDLKAPLLAA-APNS-KMIITTRHSHVAS--------TMGPIKHYNLKRLLDEDCWSIFI 356 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTTR~~~v~~--------~~~~~~~~~l~~L~~~~~~~Lf~ 356 (1112)
...-+||+||+.......-..+...+... ..+. .+|+|++...... .+.....+.+.++++++-..++.
T Consensus 89 -~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~ 167 (227)
T PRK08903 89 -PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALK 167 (227)
T ss_pred -ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHH
Confidence 22347889999654322222233333221 1333 4666666432211 22234688999999988777776
Q ss_pred HhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhh
Q 047598 357 KHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLL 396 (1112)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 396 (1112)
+.+-.... ...++....+++.+.|.+..+..+...+
T Consensus 168 ~~~~~~~v----~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 168 AAAAERGL----QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 54422221 1223456778889999998877666544
No 88
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=4e-05 Score=86.13 Aligned_cols=189 Identities=16% Similarity=0.125 Sum_probs=109.9
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++|.+..+..|..++.. +.-...+.++|+.|+||||+|+.+++..--... ..+. .+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~-------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~-~~~~-----pCg~C~s---- 80 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKS-------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENP-IGNE-----PCNECTS---- 80 (484)
T ss_pred HHHhChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccc-cCcc-----ccCCCcH----
Confidence 4689999999999888865 112346789999999999999999876432100 0000 0011101
Q ss_pred HHHHHHHhcCCC--------CCCCChHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEc-C
Q 047598 258 SKALLESITRKP--------CHLNTLNEVQVDLKTA-VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITT-R 327 (1112)
Q Consensus 258 ~~~il~~l~~~~--------~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT-R 327 (1112)
-+.+........ ....+..++...+... ..++.-++|+|++.......+..+...+-.......+|.+| .
T Consensus 81 C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte 160 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTE 160 (484)
T ss_pred HHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCC
Confidence 111111111000 0111222222222221 24566799999998877777888877665443455555444 4
Q ss_pred Chhhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH
Q 047598 328 HSHVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL 387 (1112)
Q Consensus 328 ~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 387 (1112)
...+.... .....|.+.+++.++..+.+.+.+...+. ...++....|++.++|.+-
T Consensus 161 ~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 161 FHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHH
Confidence 34443322 23467999999999988888776643222 1123456889999999873
No 89
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.09 E-value=0.00017 Score=81.62 Aligned_cols=186 Identities=17% Similarity=0.176 Sum_probs=110.0
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc-----------------CCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK-----------------DFKF 240 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~~~F 240 (1112)
..++|.+..++.+.+++.. +.-...+.++|++|+||||+|+.+.+...-... +.++
T Consensus 14 ~~iig~~~~~~~l~~~~~~-------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 86 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKN-------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSL 86 (355)
T ss_pred hhccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 4678999999999998864 123457889999999999999888765421100 0122
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCc
Q 047598 241 DIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNS 320 (1112)
Q Consensus 241 ~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 320 (1112)
+. +++.-...... +..+++++.+... -..+++-++|+|++..........+...+......+
T Consensus 87 ~~-~~~~~~~~~~~-~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 87 DV-IEIDAASNNGV-DDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred CE-EEeeccccCCH-HHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 22 22222111111 1112222222110 122445588999997655555666766665444566
Q ss_pred EEEEEcCChh-hhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 321 KMIITTRHSH-VASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 321 ~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
.+|++|.+.. +.... .....+++.+++.++..+.+...+-..+..- .++.+..+++.++|.|-.+...
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHH
Confidence 7677765543 22221 2235788899999998888887664332211 1346678899999988655443
No 90
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.09 E-value=6.6e-06 Score=85.60 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=61.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCChH------HH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV--FDVLSISKALLESITRKPCHLNTLN------EV 278 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~ 278 (1112)
-..++|+|.+|+|||||++.++++... .+|+.++|+.+... .++.++++.+...+-....+..... ..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~----~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK----NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc----ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 458899999999999999999998753 47999999997766 7899999998443322221111111 11
Q ss_pred HHHHHH-HhCCCcEEEEEeCCC
Q 047598 279 QVDLKT-AVDGKRFLLVLDDVW 299 (1112)
Q Consensus 279 ~~~l~~-~l~~kr~LlVlDdv~ 299 (1112)
...... .-.+++.++++|++.
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHH
Confidence 122222 235899999999993
No 91
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00013 Score=84.47 Aligned_cols=196 Identities=15% Similarity=0.165 Sum_probs=108.8
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
-..++|++..++.+.+++.. +.-.+.+.++|+.|+||||+|+.+.+...-. -|... ..++.-.
T Consensus 15 F~dIIGQe~iv~~L~~aI~~-------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~---------~~~~~-~~Cg~C~ 77 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILN-------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCL---------NPKDG-DCCNSCS 77 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCC---------CCCCC-CCCcccH
Confidence 34788999999999998854 1223678899999999999999988754211 01100 0011001
Q ss_pred HHHHHHHHhcCC-----CCCCCChHH---HHHHHHHH-hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcC
Q 047598 257 ISKALLESITRK-----PCHLNTLNE---VQVDLKTA-VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTR 327 (1112)
Q Consensus 257 ~~~~il~~l~~~-----~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 327 (1112)
..+.+....... .......++ +...+... ..+++-++|+|+++......+..+...+........+|++|.
T Consensus 78 sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred HHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 111111100000 000011122 11111111 123344699999987666677777776655444556655554
Q ss_pred C-hhhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch-HHHHHHh
Q 047598 328 H-SHVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP-LAAKSLG 393 (1112)
Q Consensus 328 ~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 393 (1112)
. ..+... ......+++.+++.++....+...+...+..- ..+.+..+++.++|.+ -|+..+-
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I----s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI----EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3 333322 22346789999999999888887664322111 1235678899999965 4444444
No 92
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.0001 Score=86.60 Aligned_cols=192 Identities=14% Similarity=0.120 Sum_probs=110.3
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
-..+||.+..+..+...+.. +.-...+.++|..|+||||+|+.+.+..--. ..+. ...+..-.
T Consensus 15 f~divGQe~vv~~L~~~l~~-------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~---~~~~-------~~pCg~C~ 77 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDL-------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCE---TGIT-------ATPCGECD 77 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhc---cCCC-------CCCCCCCH
Confidence 34789999999999888865 1223557899999999999999998764211 0000 00000001
Q ss_pred HHHHHHHH-------hcCC-CCCCCChHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcC
Q 047598 257 ISKALLES-------ITRK-PCHLNTLNEVQVDLKT-AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTR 327 (1112)
Q Consensus 257 ~~~~il~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 327 (1112)
.-+.|... +... ....++..++...+.. -..+++-++|+|++........+.+...+-......++|++|.
T Consensus 78 ~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred HHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence 11111100 0000 0001112222222211 1346777999999987776777777776665545666666555
Q ss_pred Ch-hhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHH
Q 047598 328 HS-HVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAA 389 (1112)
Q Consensus 328 ~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1112)
+. .+... ..-...|.+.+++.++..+.+.+.+-..+.. ..+.....|++.++|.+--+
T Consensus 158 ~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~----~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 158 DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP----FEPRALQLLARAADGSMRDA 217 (647)
T ss_pred CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 54 33322 2234789999999999998888765322211 11234577899999977533
No 93
>PRK05642 DNA replication initiation factor; Validated
Probab=98.04 E-value=9.2e-05 Score=77.32 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=90.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
...+.|+|..|+|||.|++++++..... -..++|++..+ +... . ..+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~-----~~~v~y~~~~~------~~~~--------------~----~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-----GEPAVYLPLAE------LLDR--------------G----PELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-----CCcEEEeeHHH------HHhh--------------h----HHHHHhh
Confidence 3678999999999999999998754321 23456666532 1110 0 1122222
Q ss_pred CCCcEEEEEeCCCCCC-hhhHHH-HHhcccC-CCCCcEEEEEcCChh---------hhhhcCCCceeeCCCCChHhHHHH
Q 047598 287 DGKRFLLVLDDVWNED-YSLWVD-LKAPLLA-AAPNSKMIITTRHSH---------VASTMGPIKHYNLKRLLDEDCWSI 354 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~L 354 (1112)
.+-. ++|+||+.... ...|.. +...+.. ...|..+|+|++... +.+++.....++++++++++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 67899996332 134544 3322221 124667888887432 223344557789999999999999
Q ss_pred HHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 355 FIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 355 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
+..++....- . .-+++..-|++.+.|..-++..+
T Consensus 175 l~~ka~~~~~-~---l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 175 LQLRASRRGL-H---LTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHcCC-C---CCHHHHHHHHHhcCCCHHHHHHH
Confidence 9876654321 1 22456778888888876544433
No 94
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.0001 Score=86.24 Aligned_cols=183 Identities=14% Similarity=0.111 Sum_probs=107.8
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc----------------CCCC
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK----------------DFKF 240 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----------------~~~F 240 (1112)
-..++|.+..+..|..++.. +.-.+.+.++|..|+||||+|+.+.+..--... .+.|
T Consensus 15 FddIIGQe~vv~~L~~ai~~-------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDE-------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCc
Confidence 35789999999999999865 122457889999999999999988775321100 0001
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCC
Q 047598 241 DIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKT-AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPN 319 (1112)
Q Consensus 241 ~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 319 (1112)
..++.+.......+. ++.++...... -..+++-++|+|++..........+...+......
T Consensus 88 ~DvlEidaAs~~gVd------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 88 VDLLEIDAASNTGID------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred cceEEEeccccCCHH------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 111222211111111 11111111111 12356678999999776655566666666544455
Q ss_pred cEEEEEcCCh-hhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHH
Q 047598 320 SKMIITTRHS-HVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLA 388 (1112)
Q Consensus 320 s~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1112)
+++|++|.+. .+... .+....+.+.+++.++....+.+.+-..+.. ........|++.++|.+--
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~----id~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA----YEPPALQLLGRAAAGSMRD 216 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHhCCCHHH
Confidence 6777766544 22211 1233568889999999988888766433221 1233567899999988743
No 95
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=2e-05 Score=87.38 Aligned_cols=199 Identities=16% Similarity=0.127 Sum_probs=112.8
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc--CCCCc-----------e-
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK--DFKFD-----------I- 242 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--~~~F~-----------~- 242 (1112)
...++|.+..+..+.+.+.. +.-...+-++|+.|+||+|+|..+.+..--... ...+. |
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~-------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~ 90 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRS-------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP 90 (365)
T ss_pred hhhccChHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh
Confidence 45789999999999998865 123456889999999999999777664321100 00000 0
Q ss_pred -eEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHHHHhcccCC
Q 047598 243 -KAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPLLAA 316 (1112)
Q Consensus 243 -~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (1112)
.-|+..+..+|+..+.... ..-+......-.+++. ..+.+.+ .+++-++|+|+++..+......+...+...
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~-~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSW-NEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred HHHHHHccCCCCeEEEeccc-ccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 0000001111110000000 0000000011123332 2233333 256679999999887777777777777655
Q ss_pred CCCcEEEEEcCChh-hhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 317 APNSKMIITTRHSH-VAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 317 ~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
..++.+|++|...+ +... ......+.+.+++.++..+++...... ... .....++..++|.|.....+
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LPD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CCH---HHHHHHHHHcCCCHHHHHHH
Confidence 55667777776653 3222 223468999999999999999875411 111 11257889999999866544
No 96
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00025 Score=78.27 Aligned_cols=199 Identities=16% Similarity=0.173 Sum_probs=114.7
Q ss_pred CCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHH
Q 047598 176 TERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVL 255 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 255 (1112)
....++|.+.....+...+.. +.-...+.|+|..|+||||+|..+.+..--.. ...+... .....+..-
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~-------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~-~~~~~~~---~~~~~~~~c 89 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE-------GKLHHALLFEGPEGIGKATLAFHLANHILSHP-DPAEAPE---TLADPDPAS 89 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc-------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCC-ccccCcc---ccCCCCCCC
Confidence 346789999999999999865 22345788999999999999998877643210 0001110 001111111
Q ss_pred HHHHHHHHH-------hcCC--C-----CCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHHHHhcccCC
Q 047598 256 SISKALLES-------ITRK--P-----CHLNTLNEVQVDLKTAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPLLAA 316 (1112)
Q Consensus 256 ~~~~~il~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (1112)
...+.+... +... . ...-.+++.. .+.+.+ .+++-++|+|++...+......+...+...
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 122222211 1000 0 0111233332 333333 356779999999887766667776666544
Q ss_pred CCCcEEEEEcCCh-hhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 317 APNSKMIITTRHS-HVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 317 ~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
..+..+|++|... .+.... +....+.+.+++.++..+++.+..... . ..++....|++.++|.|.....+
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-----~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-----G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-----C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4455555544433 332222 234689999999999999998743211 1 11334678899999999865544
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00019 Score=84.41 Aligned_cols=196 Identities=14% Similarity=0.124 Sum_probs=108.0
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..+||.+..+..|.+++.. +.-...+.++|..|+||||+|+.+.+..--... ......-. ..++.-..
T Consensus 16 ~dviGQe~vv~~L~~~l~~-------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~-~~~~~~~~----~pCg~C~~ 83 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQ-------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGP-DGQGGITA----TPCGVCQA 83 (618)
T ss_pred HHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCc-ccccCCCC----CCCCccHH
Confidence 4688999888888888865 123467789999999999999998654321100 00000000 00000001
Q ss_pred HHHHHHHhc-----CCCCCCCChHHHHHHHHH----HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC
Q 047598 258 SKALLESIT-----RKPCHLNTLNEVQVDLKT----AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH 328 (1112)
Q Consensus 258 ~~~il~~l~-----~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 328 (1112)
-+.|...-. .........++..+.+.. -..++.-++|+|+|+......+..+...+.......++|++|.+
T Consensus 84 C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 111100000 000001112222221111 11245568999999887777777777776654456666655543
Q ss_pred -hhhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHH
Q 047598 329 -SHVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAA 389 (1112)
Q Consensus 329 -~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1112)
..+... ......+.+++++.++..+.+.+.+...+... ..+....|++.++|.+--+
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDA 222 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 333322 23347899999999999888887664332211 1235677888999876433
No 98
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.01 E-value=1.3e-05 Score=86.69 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=60.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCChHHH------
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF--DVLSISKALLESITRKPCHLNTLNEV------ 278 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~------ 278 (1112)
-+-..|+|++|+||||||+++|+.... .+|+.++||.+.+.. .+.++++.+...+-....+.......
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~----nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITT----NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh----hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 456789999999999999999998754 379999999998887 77788888763222221111111111
Q ss_pred HHHHHHH-hCCCcEEEEEeCC
Q 047598 279 QVDLKTA-VDGKRFLLVLDDV 298 (1112)
Q Consensus 279 ~~~l~~~-l~~kr~LlVlDdv 298 (1112)
...-... -.+++++|++|++
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHHHHcCCCEEEEEECh
Confidence 1111111 3689999999999
No 99
>PLN03150 hypothetical protein; Provisional
Probab=98.01 E-value=7.6e-06 Score=98.49 Aligned_cols=93 Identities=20% Similarity=0.306 Sum_probs=80.7
Q ss_pred cccccCCcccEEEecccccc-cccccccCCCcCcEEEccccccc-cccccccCCCCCcEEeecCCCCCcccCccccCC-c
Q 047598 586 DLLPKFKRLRVLSLQRYYIG-ELLVSFEDLKLLRYLNLADTMIR-TLPESTNSLLNLEILILRNCSRLKKLPSKMRNL-I 662 (1112)
Q Consensus 586 ~~~~~~~~L~~L~L~~~~~~-~lp~~~~~l~~Lr~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L-~ 662 (1112)
..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|+.+++|++|++|+|++|.....+|..++.+ .
T Consensus 436 ~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~ 515 (623)
T PLN03150 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515 (623)
T ss_pred HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccc
Confidence 34788999999999999985 78889999999999999999998 789999999999999999997777999988764 5
Q ss_pred cccEEeecCCCccccC
Q 047598 663 NLHHLDIKGANLLREM 678 (1112)
Q Consensus 663 ~L~~L~L~~~~~l~~l 678 (1112)
++..+++.+|..+...
T Consensus 516 ~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 516 HRASFNFTDNAGLCGI 531 (623)
T ss_pred cCceEEecCCccccCC
Confidence 7788999988744433
No 100
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.00 E-value=0.00022 Score=72.07 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=62.9
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCCh-hhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCC
Q 047598 288 GKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHS-HVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSL 365 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 365 (1112)
+.+-++|+||+.......++.+...+....+.+.+|++|++. .+.... .....+.+.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 456689999997766666777777776655566777777654 222221 23468999999999998888776 1 1
Q ss_pred CCchhHHHHHHHHHhhcCCchH
Q 047598 366 KAHQISELFRKKVVGKCGGLPL 387 (1112)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~glPl 387 (1112)
+ ++.+..|++.++|.|.
T Consensus 170 -~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -S----EEAAELLLALAGGSPG 186 (188)
T ss_pred -C----HHHHHHHHHHcCCCcc
Confidence 1 3457889999999885
No 101
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=0.00017 Score=80.78 Aligned_cols=188 Identities=13% Similarity=0.107 Sum_probs=107.3
Q ss_pred cceecchhhHHHHHHHHhcCCCC--CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc----------------cCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK--TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA----------------KDFK 239 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----------------~~~~ 239 (1112)
..++|.+..++.+..++...... .....-.+-+.++|+.|+|||++|+.+.+..--.. .+.|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35889999999999998651100 00011346688999999999999998866432110 0011
Q ss_pred CceeEEEEeC-CCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCC
Q 047598 240 FDIKAWVCIS-DVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAP 318 (1112)
Q Consensus 240 F~~~~wv~~~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 318 (1112)
.| ..++... ....+.+ .+.+.+.+.. .-..+++-++|+|+++.........+...+.....
T Consensus 85 pD-~~~i~~~~~~i~i~~-iR~l~~~~~~----------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 85 PD-VRVVAPEGLSIGVDE-VRELVTIAAR----------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CC-EEEeccccccCCHHH-HHHHHHHHHh----------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 11 1111111 1111111 1111111111 01134556888899987766666666666655455
Q ss_pred CcEEEEEcCCh-hhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 319 NSKMIITTRHS-HVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 319 gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
+..+|++|.+. .+... .+....+.+.+++.++..+.+..... .. .+.+..++..++|.|.....+
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 66666666654 33322 22346899999999999888874321 11 234677899999999655433
No 102
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.99 E-value=0.00012 Score=75.34 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=93.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1112)
....+.|+|..|+|||.|.+++++..... ..-..+++++. .++...+...+... . ...++..
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~---~~~~~v~y~~~------~~f~~~~~~~~~~~-----~----~~~~~~~ 94 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQ---HPGKRVVYLSA------EEFIREFADALRDG-----E----IEEFKDR 94 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHH---CTTS-EEEEEH------HHHHHHHHHHHHTT-----S----HHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhc---cccccceeecH------HHHHHHHHHHHHcc-----c----chhhhhh
Confidence 34467899999999999999999875432 11123445443 45555565555431 1 2234444
Q ss_pred hCCCcEEEEEeCCCCCCh-hhHHHHHhcccC--CCCCcEEEEEcCCh---------hhhhhcCCCceeeCCCCChHhHHH
Q 047598 286 VDGKRFLLVLDDVWNEDY-SLWVDLKAPLLA--AAPNSKMIITTRHS---------HVASTMGPIKHYNLKRLLDEDCWS 353 (1112)
Q Consensus 286 l~~kr~LlVlDdv~~~~~-~~~~~l~~~l~~--~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 353 (1112)
+++ -=+|++||++.... ..|......+.+ ...|-+||+|++.. ++.+.+...-.++++++++++-.+
T Consensus 95 ~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 95 LRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp HCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHH
T ss_pred hhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHH
Confidence 443 44788999976432 234332222211 12466899999643 223344566789999999999999
Q ss_pred HHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHH
Q 047598 354 IFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAK 390 (1112)
Q Consensus 354 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1112)
++.+.+....-. .-+++++-|++.+.+..-.+.
T Consensus 174 il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 174 ILQKKAKERGIE----LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHH
Confidence 999888654432 224466777777776554443
No 103
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=1.4e-06 Score=100.08 Aligned_cols=109 Identities=25% Similarity=0.246 Sum_probs=79.9
Q ss_pred cccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEE
Q 047598 588 LPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHL 667 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 667 (1112)
+..+++|..|++.+|.|..+...+..+++|++|+|++|.|..+ ..+..+..|+.|++++| .+..++. +..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhccC-Cccchhhhcc
Confidence 5667888888888888877765577888888888888888877 45677788888888887 6666654 5568888888
Q ss_pred eecCCCccccCCCC-CCCCCCCCccCeeeeccCC
Q 047598 668 DIKGANLLREMPLG-MKELKNLRTLSNFIVGKGE 700 (1112)
Q Consensus 668 ~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~ 700 (1112)
++++|. +..+... +..+.+|+.+.+..+....
T Consensus 168 ~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 168 DLSYNR-IVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred cCCcch-hhhhhhhhhhhccchHHHhccCCchhc
Confidence 888887 4444432 4667777777766655433
No 104
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00018 Score=82.11 Aligned_cols=182 Identities=19% Similarity=0.162 Sum_probs=111.1
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----c-----------CCCCc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-----K-----------DFKFD 241 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~-----------~~~F~ 241 (1112)
..++|.+..++.+.+.+.. +.-.+.+.++|+.|+||||+|+.+.+..--.. . .+.+.
T Consensus 13 ~dliGQe~vv~~L~~a~~~-------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~ 85 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTL-------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHP 85 (491)
T ss_pred HHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCC
Confidence 4689999988888888754 12235788999999999999988876321000 0 01122
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcE
Q 047598 242 IKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSK 321 (1112)
Q Consensus 242 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 321 (1112)
-++.+..+....+.+ .+.+++..... -..+++-++|+|++........+.+...+....+.++
T Consensus 86 Dv~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 86 DVIEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred CEEEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 233333333323222 22222222110 0134566899999977666667777777766556677
Q ss_pred EEEEcC-Chhhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH
Q 047598 322 MIITTR-HSHVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL 387 (1112)
Q Consensus 322 iivTTR-~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 387 (1112)
+|++|. ...+...+ .....+.+.+++.++..+.+.+.+...+.. ..++....|++.++|.+-
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~----i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE----HDEESLKLIAENSSGSMR 212 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHH
Confidence 666554 34443322 234678999999999988888876543321 223356788999998774
No 105
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.97 E-value=0.00011 Score=82.67 Aligned_cols=182 Identities=14% Similarity=0.087 Sum_probs=100.3
Q ss_pred CcceecchhhHHHHHHHHhcCCCC-----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEK-----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
...+.|+++.+++|.+.+..+-.. .-+-...+-+.++|++|+|||++|+++++... ..| +.+.
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~-----~~~-----~~v~-- 188 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATF-----IRVV-- 188 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC-----CCE-----Eecc--
Confidence 457899999999998877421000 00112244588999999999999999998754 223 2221
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hh---hHHHHHhcccC--
Q 047598 252 FDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED-----------YS---LWVDLKAPLLA-- 315 (1112)
Q Consensus 252 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~-- 315 (1112)
...+..... + .........+...-...+.+|++|+++... .. .+..+...+..
T Consensus 189 --~~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 189 --GSELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --hHHHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 111111111 0 001111112222223467899999986421 11 12222222221
Q ss_pred CCCCcEEEEEcCChhhhh-----hcCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch
Q 047598 316 AAPNSKMIITTRHSHVAS-----TMGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 316 ~~~gs~iivTTR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1112)
...+.+||.||....... ...-...+.+...+.++..++|..++.+.... .... ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 124667888887543321 11224578899999999999999887544321 1122 255667776653
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.0002 Score=83.73 Aligned_cols=187 Identities=17% Similarity=0.141 Sum_probs=109.2
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----c-----------CCCCc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-----K-----------DFKFD 241 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~-----------~~~F~ 241 (1112)
..++|.+..+..+..++.. +.-...+.++|..|+||||+|+.+.+..--.. . .+.|.
T Consensus 16 ~divGq~~v~~~L~~~i~~-------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~ 88 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQ-------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFV 88 (527)
T ss_pred HHhcCcHHHHHHHHHHHHc-------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 4688999999999988865 12235678999999999999999876542110 0 01121
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcE
Q 047598 242 IKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSK 321 (1112)
Q Consensus 242 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 321 (1112)
..+++..+....+. ..+++++..... -..+++-++|+|++..........+...+......+.
T Consensus 89 d~~ei~~~~~~~vd-~ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 89 DLIEVDAASNTQVD-AMRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred ceeEeeccccCCHH-HHHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 22223222111111 112222221110 1135677999999987666666777776665445666
Q ss_pred EEEEcCCh-hhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH-HHHHH
Q 047598 322 MIITTRHS-HVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL-AAKSL 392 (1112)
Q Consensus 322 iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 392 (1112)
+|++|.+. .+... ......+++++++.++..+.+.+.+...+.. ..+.....|++.++|.+- |+..+
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~----~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP----FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66655443 33211 1123578999999999888777655332211 122345778899999764 44444
No 107
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00024 Score=82.54 Aligned_cols=184 Identities=16% Similarity=0.116 Sum_probs=108.9
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----c-----------CCCCc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-----K-----------DFKFD 241 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~-----------~~~F~ 241 (1112)
..+||.+..+..+..++.. +.-...+.++|+.|+||||+|+.+.+..--.. . .+.|.
T Consensus 16 ~divGq~~v~~~L~~~~~~-------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQ-------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFP 88 (509)
T ss_pred HHhcCCHHHHHHHHHHHHh-------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCc
Confidence 4689999999999999965 12234678999999999999998887542110 0 01121
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcE
Q 047598 242 IKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSK 321 (1112)
Q Consensus 242 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 321 (1112)
-++.+..+....+.++ +++++.+... -..++.-++|+|++..........+...+......++
T Consensus 89 d~~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 89 DLFEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred eEEEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 2233332222222221 2222222111 1235667899999987776677777776665555677
Q ss_pred EEEEcCCh-hhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHH
Q 047598 322 MIITTRHS-HVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAA 389 (1112)
Q Consensus 322 iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1112)
+|++|.+. .+... ......+++++++.++....+.+.+-..+... .......|++.++|.+--+
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~----~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF----ENAALDLLARAANGSVRDA 217 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHH
Confidence 66665443 33322 12335688999999887776665553322211 1234567888899877433
No 108
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.00021 Score=77.52 Aligned_cols=212 Identities=16% Similarity=0.131 Sum_probs=128.0
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
+..++||+.++..+.+++.. .- .....+-+.|.|.+|.|||.+...|+.+..... .. .+++++.+..-....+
T Consensus 149 p~~l~gRe~e~~~v~~F~~~-hl---e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~--~~-~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSL-HL---ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS--KS-PVTVYINCTSLTEASA 221 (529)
T ss_pred CCCccchHHHHHHHHHHHHh-hh---hcccCcceEeeCCCCcchHHHHHHHHHhhhhhc--cc-ceeEEEeeccccchHH
Confidence 56789999999999999865 21 123456788999999999999999998875331 11 2446666665566778
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCC--cEEEEEeCCCCCChhhHHHHHhcccC-CCCCcEEEEEcCCh--hh
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGK--RFLLVLDDVWNEDYSLWVDLKAPLLA-AAPNSKMIITTRHS--HV 331 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTTR~~--~v 331 (1112)
++..|...+...........+....+.++..+. -+|+|+|.++.-....-..+...|.+ .-+++|+|+.---. +.
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 888888877322211122245555666655443 58999999853211111112222222 33677766543211 11
Q ss_pred hhh---------cCCCceeeCCCCChHhHHHHHHHhHhCCCCC-CCchhHHHHHHHHHhhcCCchHHHHHHhhh
Q 047598 332 AST---------MGPIKHYNLKRLLDEDCWSIFIKHAYESRSL-KAHQISELFRKKVVGKCGGLPLAAKSLGGL 395 (1112)
Q Consensus 332 ~~~---------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 395 (1112)
... ......+...|.+.++-.++|..+.-..... ..+...+-.|++++.-.|.+--|+-+.-++
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 110 1134567889999999999999887544332 223355555666666666666666555443
No 109
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1e-05 Score=58.44 Aligned_cols=33 Identities=39% Similarity=0.474 Sum_probs=17.0
Q ss_pred cCcEEEccccccccccccccCCCCCcEEeecCC
Q 047598 616 LLRYLNLADTMIRTLPESTNSLLNLEILILRNC 648 (1112)
Q Consensus 616 ~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~ 648 (1112)
+|++|++++|.|+.+|+.+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555555555555555555555555555555
No 110
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=1.9e-06 Score=99.06 Aligned_cols=108 Identities=27% Similarity=0.399 Sum_probs=88.7
Q ss_pred cCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEee
Q 047598 590 KFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDI 669 (1112)
Q Consensus 590 ~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 669 (1112)
.+..+..+++..|.+..+-..++.+++|.+|++.+|.|..+...+..+.+|++|++++| .+..+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhee
Confidence 45667777788888887666688999999999999999988766889999999999998 7877765 788888999999
Q ss_pred cCCCccccCCCCCCCCCCCCccCeeeeccCCc
Q 047598 670 KGANLLREMPLGMKELKNLRTLSNFIVGKGEA 701 (1112)
Q Consensus 670 ~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~ 701 (1112)
++|. +..+ .++..+++|+.+++.++.+...
T Consensus 148 ~~N~-i~~~-~~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 148 SGNL-ISDI-SGLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred ccCc-chhc-cCCccchhhhcccCCcchhhhh
Confidence 9998 5555 3566788888888888765544
No 111
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00023 Score=80.86 Aligned_cols=196 Identities=14% Similarity=0.168 Sum_probs=108.3
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEE-eCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVC-ISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~-~~~~~~~~~ 256 (1112)
..++|.+..++.+..++.. +.-...+.++|+.|+||||+|+.+.+...-. .......|.. ....+..=.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~-------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~---~~~~~~~~~~~~~~~c~~c~ 85 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRM-------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ---RMIDDADYLQEVTEPCGECE 85 (397)
T ss_pred hhccChHHHHHHHHHHHHh-------CCcceeEEEECCCCCCHHHHHHHHHHHhcCC---CCcCcccccccCCCCCCCCH
Confidence 4688999999988888864 1223457899999999999999987754321 0000000000 000000000
Q ss_pred HHHHHHHHhcC-----CCCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEc
Q 047598 257 ISKALLESITR-----KPCHLNTLNEVQVDLKTAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITT 326 (1112)
Q Consensus 257 ~~~~il~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT 326 (1112)
.-+.+...... ........++... +.+.+ .+++-++|+|++.......+..+...+....+.+.+|++|
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 01111100000 0001111233222 22222 3456688999997766667888877776655666766555
Q ss_pred -CChhhhhhcC-CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHH
Q 047598 327 -RHSHVASTMG-PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLA 388 (1112)
Q Consensus 327 -R~~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1112)
+...+..... ....+++.+++.++..+.+...+-..+. ....+.+..|++.++|.+--
T Consensus 165 ~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 165 TELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRD 224 (397)
T ss_pred CChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 4333332221 2356889999999988877776533221 12234578899999997743
No 112
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.1e-05 Score=58.21 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=35.6
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEccccccccccc
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE 632 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~ 632 (1112)
++|++|++++|.++.+|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47999999999999999889999999999999999987753
No 113
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00035 Score=82.43 Aligned_cols=198 Identities=15% Similarity=0.154 Sum_probs=111.4
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
-..++|.+..++.+.+++.. +.-..-+.++|+.|+||||+|+.+.+..--...+.. ....+. .+..-.
T Consensus 23 f~dliGq~~~v~~L~~~~~~-------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~-~~~~~~----~cg~c~ 90 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFET-------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGD-GGPTID----LCGVGE 90 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc-CCCccc----cCcccH
Confidence 35789999999999998865 123456889999999999999999876432100000 000000 000000
Q ss_pred HHHHHHHHhcCC-----CCCCCChHH---HHHHHHH-HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEc-
Q 047598 257 ISKALLESITRK-----PCHLNTLNE---VQVDLKT-AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITT- 326 (1112)
Q Consensus 257 ~~~~il~~l~~~-----~~~~~~~~~---~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT- 326 (1112)
--+.|....... .......++ +...++. -..+++-++|+|++........+.+...+.....++++|++|
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 011111111000 001112222 2222211 123455679999997766666777777766555566766555
Q ss_pred CChhhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHH
Q 047598 327 RHSHVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAK 390 (1112)
Q Consensus 327 R~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1112)
....+...+ .....+.+.+++.++....+.+.+-..+.. ...+....|++.++|.+.-+.
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~----i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE----VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 434433222 234678999999999988888766433221 122456788999999885443
No 114
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.89 E-value=0.00025 Score=81.28 Aligned_cols=168 Identities=13% Similarity=0.121 Sum_probs=101.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
..-+.|+|..|+|||+|++++++..... ..-..+++++. .++...+...+.... .....+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~---~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESN---FSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHh---CCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHh
Confidence 3568999999999999999998854321 11123344443 456666666654311 1223344444
Q ss_pred CCCcEEEEEeCCCCCCh-hhHHH-HHhcccC-CCCCcEEEEEcCCh---------hhhhhcCCCceeeCCCCChHhHHHH
Q 047598 287 DGKRFLLVLDDVWNEDY-SLWVD-LKAPLLA-AAPNSKMIITTRHS---------HVASTMGPIKHYNLKRLLDEDCWSI 354 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~L 354 (1112)
+. .-+||+||+..... ..|.+ +...+.. ...|..||+|+... .+..++...-.+.+++++.++-.++
T Consensus 205 ~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 CQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 43 44888999965431 22222 2222221 12345788887643 2333444566788999999999999
Q ss_pred HHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHh
Q 047598 355 FIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLG 393 (1112)
Q Consensus 355 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1112)
+.+++-..+. ....-+++..-|++.++|.|-.+.-+.
T Consensus 284 L~~~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 284 IKKEIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 9988754321 012335577889999999987665444
No 115
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.89 E-value=0.00012 Score=75.08 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=111.9
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEE-EEeCCCCCHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAW-VCISDVFDVL 255 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~w-v~~~~~~~~~ 255 (1112)
-..++|.+..+..+.+.+.. ........+|++|.|||+-|..++...--. ..|.+++- .++|....+.
T Consensus 35 ~de~~gQe~vV~~L~~a~~~--------~~lp~~LFyGPpGTGKTStalafar~L~~~---~~~~~rvl~lnaSderGis 103 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR--------RILPHYLFYGPPGTGKTSTALAFARALNCE---QLFPCRVLELNASDERGIS 103 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh--------cCCceEEeeCCCCCcHhHHHHHHHHHhcCc---cccccchhhhccccccccc
Confidence 45788999999999888865 345688899999999999998887754322 44554432 2333222211
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHh--CCCc-EEEEEeCCCCCChhhHHHHHhcccCCCCCcEEE-EEcCChhh
Q 047598 256 SISKALLESITRKPCHLNTLNEVQVDLKTAV--DGKR-FLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMI-ITTRHSHV 331 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTTR~~~v 331 (1112)
+.+. ...+...+.....+.. ..++ -.||||+++....+.|..+...+......++.| ||+--..+
T Consensus 104 -vvr~----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 104 -VVRE----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRI 172 (346)
T ss_pred -chhh----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhC
Confidence 1000 0011111111110000 1123 478899999988899999998887766667744 44443333
Q ss_pred hhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCc
Q 047598 332 ASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGL 385 (1112)
Q Consensus 332 ~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1112)
.... .....|..++|.+++...-+...+-..+...++ +..+.|++.++|-
T Consensus 173 i~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 173 IRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGD 223 (346)
T ss_pred ChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCc
Confidence 3221 223568889999999988888877554443333 3457788888884
No 116
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00054 Score=79.93 Aligned_cols=198 Identities=14% Similarity=0.170 Sum_probs=111.8
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++|.+..+..|..++.. +.-...+.++|+.|+||||+|+.+.+..--. .... ...++.=..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~-------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~---~~~~-------~~pCg~C~s 78 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQE-------NRVAPAYLFSGTRGVGKTTIARIFAKALNCE---TAPT-------GEPCNTCEQ 78 (624)
T ss_pred HHhcCCHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHhcccc---CCCC-------CCCCcccHH
Confidence 4678988888888887754 1224577889999999999999988765321 0000 000000001
Q ss_pred HHHHHHHhcCCC-----CCCCChHH---HHHHHHH-HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC
Q 047598 258 SKALLESITRKP-----CHLNTLNE---VQVDLKT-AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH 328 (1112)
Q Consensus 258 ~~~il~~l~~~~-----~~~~~~~~---~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 328 (1112)
-+.+........ .....+++ +...+.. -..+++-+||+|++.......+..+...+........+|++|..
T Consensus 79 C~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred HHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 111111000000 00011121 1111111 12356679999999877666677777766544345556665554
Q ss_pred -hhhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch-HHHHHHhhhh
Q 047598 329 -SHVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP-LAAKSLGGLL 396 (1112)
Q Consensus 329 -~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l 396 (1112)
..+... ......+++.+++.++..+.+...+...... ...+.+..|++.++|.+ -|+..+...+
T Consensus 159 ~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~----id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 159 PHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD----YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344322 1233578999999999998888766433221 12345678889999854 6777766544
No 117
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00024 Score=84.74 Aligned_cols=195 Identities=15% Similarity=0.155 Sum_probs=111.1
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++|.+..++.+..++.. +.-...+.++|..|+||||+|+.+.+.......+..+ ..++.-..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~-------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~---------~~c~~c~~ 79 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAE-------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG---------RPCGTCEM 79 (585)
T ss_pred HHhcCCHHHHHHHHHHHHh-------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---------CCCccCHH
Confidence 4789999999999888865 1223567899999999999999998764311000000 01111112
Q ss_pred HHHHHHHhcCCC-----CCCCChHHHH---HHHHHH-hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC
Q 047598 258 SKALLESITRKP-----CHLNTLNEVQ---VDLKTA-VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH 328 (1112)
Q Consensus 258 ~~~il~~l~~~~-----~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 328 (1112)
.+.+........ ......++.. ..+... ..+++-++|+|++........+.+...+......+.+|++|.+
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred HHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 222222111100 0111222221 111111 1245678999999766656666776666554456666666643
Q ss_pred -hhhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 329 -SHVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 329 -~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
..+.... .....+.+.+++.++....+...+...+.. ...+.+..|++.++|.+-.+...
T Consensus 160 ~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~----i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 160 VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN----LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3333221 233578899999999888887766443221 12345778999999988654433
No 118
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00086 Score=75.96 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=104.1
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc---cCCCCceeE-EEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA---KDFKFDIKA-WVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~~~F~~~~-wv~~~~~~~ 253 (1112)
..++|.+...+.+.+++.. +.-.+.+.++|+.|+||||+|+.+.+...... ....|...+ -+......+
T Consensus 17 ~~iig~~~~~~~l~~~i~~-------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIEN-------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNS 89 (367)
T ss_pred HhcCCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCC
Confidence 4678999999999998864 12346888999999999999999877542210 001122111 111111111
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEc-CChhhh
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITT-RHSHVA 332 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~ 332 (1112)
. +..+.+++.+... -..+++-++|+|++.......+..+...+......+.+|++| ....+.
T Consensus 90 ~-~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 90 V-DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred H-HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 1 1112222221100 112445689999997655555666665554433445555555 333332
Q ss_pred hh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH
Q 047598 333 ST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL 387 (1112)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 387 (1112)
.. ......++..+++.++....+...+...+..- ..+....+++.++|.+-
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i----~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF----EDDALHIIAQKADGALR 204 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhCCCCHH
Confidence 22 12335789999999999888887665433211 13456778888988654
No 119
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.83 E-value=0.0015 Score=72.05 Aligned_cols=244 Identities=16% Similarity=0.147 Sum_probs=131.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1112)
....+.|||..|.|||.|++++.+..... ......+.+ +.......++..+.. ....++++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~-----~~~a~v~y~----~se~f~~~~v~a~~~---------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN-----GPNARVVYL----TSEDFTNDFVKALRD---------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhh-----CCCceEEec----cHHHHHHHHHHHHHh---------hhHHHHHHh
Confidence 46799999999999999999999976532 321122222 223344444444332 123445555
Q ss_pred hCCCcEEEEEeCCCCCC-----hhhHHHHHhcccCCCCCcEEEEEcCCh---------hhhhhcCCCceeeCCCCChHhH
Q 047598 286 VDGKRFLLVLDDVWNED-----YSLWVDLKAPLLAAAPNSKMIITTRHS---------HVASTMGPIKHYNLKRLLDEDC 351 (1112)
Q Consensus 286 l~~kr~LlVlDdv~~~~-----~~~~~~l~~~l~~~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~ 351 (1112)
. .-=++++||++-.. ++....+...+... |-.||+|++.. ++.+++...-.+.+.+++.+..
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 5 34488899997522 12222233333333 33899998643 3445566678899999999999
Q ss_pred HHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhc--C-C-CHHHHHHHHhccccCCCCCCCchHHHHH
Q 047598 352 WSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLR--T-T-RCDLWEDILDSKIWDLPQQSGILPVLRL 427 (1112)
Q Consensus 352 ~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~--~-~-~~~~w~~~l~~~~~~~~~~~~i~~~l~~ 427 (1112)
..++.+++......-+++...-++..+..-..-+.=|+..+..+-. + . +.+.-.+++......... -.+..+.
T Consensus 250 ~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~-itie~I~-- 326 (408)
T COG0593 250 LAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEK-ITIEDIQ-- 326 (408)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhccccc-CCHHHHH--
Confidence 9999987755544334443333444443333334444433333221 1 1 445555555432111100 1111111
Q ss_pred HhcCCchHHHHHHhHhhcCCCCceechHHHHHHHHhCCcccccCCCchHHHHHHHHHHHHhhCCcccccc
Q 047598 428 SYHHLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGSQCFHDLVSRSIFQPSS 497 (1112)
Q Consensus 428 sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~ 497 (1112)
+.+-- .|.++.+++..- - .....-.+.++|-...++|.++||.+.+.
T Consensus 327 ---------~~Va~-------~y~v~~~dl~s~------~-R~~~i~~~RqiamyL~r~lt~~Slp~IG~ 373 (408)
T COG0593 327 ---------KIVAE-------YYNVKVSDLLSK------S-RTRNIVRPRQIAMYLARELTNLSLPEIGK 373 (408)
T ss_pred ---------HHHHH-------HhCCCHHHhhcc------c-cccccchHHHHHHHHHHHHccCcHHHHHH
Confidence 11111 133333333210 0 01233456788888899999999988765
No 120
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.0013 Score=66.87 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=101.9
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
-..|+|.++-++.+.=.+..... .+....-+-++|++|.||||||.-+++...+. + -++.+....-..
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~---r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn-----~----k~tsGp~leK~g 92 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKK---RGEALDHVLLFGPPGLGKTTLAHIIANELGVN-----L----KITSGPALEKPG 92 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHh---cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC-----e----EecccccccChh
Confidence 35799999988887766654211 23456788999999999999999999987654 1 122222211111
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhc--------ccCCCCCcEE------
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAP--------LLAAAPNSKM------ 322 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~--------l~~~~~gs~i------ 322 (1112)
-+..++..+. ..=++.+|.+.......-+-+..+ .-..++++|.
T Consensus 93 DlaaiLt~Le----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 93 DLAAILTNLE----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred hHHHHHhcCC----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 1222222221 223445565543221111111111 1122334433
Q ss_pred -----EEEcCChhhhhhcC--CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHh
Q 047598 323 -----IITTRHSHVASTMG--PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLG 393 (1112)
Q Consensus 323 -----ivTTR~~~v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1112)
=-|||.-.+..... -..+.+++--+.+|-.++..+.+..-.. +..++.+.+|+++..|-|--..-+-
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHH
Confidence 34888765544332 2245678888999999999887743322 2234468899999999995444333
No 121
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.82 E-value=0.0005 Score=72.00 Aligned_cols=196 Identities=13% Similarity=0.097 Sum_probs=115.4
Q ss_pred hHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCC-CCceeEEEEeCCCCCHHHHHHHHHHH
Q 047598 186 DKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDF-KFDIKAWVCISDVFDVLSISKALLES 264 (1112)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~il~~ 264 (1112)
.++++.+++..+ ...+..-+.|||.+|.|||++++++.+..-.....+ .--.++.|.+...++...+...|+.+
T Consensus 45 ~L~~L~~Ll~~P-----~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 45 ALDRLEELLEYP-----KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHhCC-----cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 345555555442 234455689999999999999999997764332111 11257778888999999999999999
Q ss_pred hcCCCCCCCChHHHHHHHHHHhCC-CcEEEEEeCCCCC------ChhhHHHHHhcccCCCCCcEEEEEcCChhhhhhcC-
Q 047598 265 ITRKPCHLNTLNEVQVDLKTAVDG-KRFLLVLDDVWNE------DYSLWVDLKAPLLAAAPNSKMIITTRHSHVASTMG- 336 (1112)
Q Consensus 265 l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~- 336 (1112)
++...................++. +-=+||+|.+.+. .+...-.....+.+.-.=+-|.|-|++.--+-..+
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence 998876556655555555455543 3348899999642 12222233333433334455666666432221111
Q ss_pred ----CCceeeCCCCChHh-HHHHHHHhH--hCCCCCCCchhHHHHHHHHHhhcCCchH
Q 047598 337 ----PIKHYNLKRLLDED-CWSIFIKHA--YESRSLKAHQISELFRKKVVGKCGGLPL 387 (1112)
Q Consensus 337 ----~~~~~~l~~L~~~~-~~~Lf~~~~--~~~~~~~~~~~~~~~~~~i~~~c~glPl 387 (1112)
-...+.+..-+.++ ...|+.... ..-..+ ..-...++++.|...++|+.=
T Consensus 200 QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 200 QLASRFEPFELPRWELDEEFRRLLASFERALPLRKP-SNLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHcCCchH
Confidence 12345555555444 444543321 121221 122346688999999999763
No 122
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=2.3e-07 Score=93.26 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=69.8
Q ss_pred CCCCCCcCEEEEecCCCCcccCCC---CCCCCCCeEEEcCCcccccc-cccccCCCCCCcCEEEEcccCCccccccCccc
Q 047598 935 MHRLNFLEHLRIGQCPSILSFPEE---GFPTNLASLVIGGDVKMYKG-LIQWGLHRLTALRRLEIDGCHDDEVECFPNEE 1010 (1112)
Q Consensus 935 l~~l~~L~~L~L~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~ 1010 (1112)
+.+++.|.+|+|++|......-.. ...++|..|+|+||...... ......+.+|+|..||+++|... .+..
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l-----~~~~ 330 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML-----KNDC 330 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc-----CchH
Confidence 557888899999999655443211 23567888888888544322 22233456677777777775321 1110
Q ss_pred ccccCCCCccEEEecCCCCCCcCCCCCCCCeEEeecCCCCCc--CCCCCCCCCccEEEEccC
Q 047598 1011 MGVMLPSSLTHLTIAGFKKLKKLSLMTSLEYLWIKNCPNLAS--FPELGLPSSLTQLYIDHC 1070 (1112)
Q Consensus 1011 ~~~~~~~sL~~L~l~~~~~L~~l~~l~~L~~L~ls~c~~l~~--lp~~~~~~~L~~L~l~~c 1070 (1112)
+ +.+..++.|++|.++.|-.+-- +-++...|+|.+|++.+|
T Consensus 331 ~-------------------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 331 F-------------------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred H-------------------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 0 1123578888999998865422 224677889999999988
No 123
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.0011 Score=78.81 Aligned_cols=195 Identities=15% Similarity=0.175 Sum_probs=108.5
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCC----ceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKF----DIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F----~~~~wv~~~~~~~ 253 (1112)
..++|.+..+..+..++.. +.-.+.+.++|+.|+||||+|+.+++..--......+ .|.. +....++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~-------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~--~~~~~~D 88 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKS-------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE--NVNNSLD 88 (725)
T ss_pred HHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH--hhcCCCc
Confidence 4688999999999998865 1234567789999999999999987653211000000 0000 0000000
Q ss_pred HHHHHHHHHHHhcCCC-CCCCChHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEE-EEcCChh
Q 047598 254 VLSISKALLESITRKP-CHLNTLNEVQVDLKTA-VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMI-ITTRHSH 330 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTTR~~~ 330 (1112)
+.. +.... ....+++++...+... ..+++-++|+|++.......+..+...+-.......+| +||+...
T Consensus 89 vie--------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 89 IIE--------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred EEE--------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 000 00000 0011122222222211 23566799999998766667777776665544455545 4444444
Q ss_pred hhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH-HHHHHh
Q 047598 331 VAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL-AAKSLG 393 (1112)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 393 (1112)
+... ......+.+.+++.++..+.+...+-..+... ..+.+..|++.++|.+- |+..+-
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i----d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY----EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4332 22346899999999999888877553322111 12346788999988664 444433
No 124
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.78 E-value=9.8e-05 Score=80.50 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=62.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCChH------H
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV--FDVLSISKALLESITRKPCHLNTLN------E 277 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~ 277 (1112)
.-..++|+|.+|+|||||++.+++.... .+|+..+||.+.+. .++.++++.++..+-....+..... .
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~----nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~ 242 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR----NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEM 242 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc----cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHH
Confidence 3458899999999999999999998653 47999999999865 7889999998654433322211111 1
Q ss_pred HHHHHHH-HhCCCcEEEEEeCCC
Q 047598 278 VQVDLKT-AVDGKRFLLVLDDVW 299 (1112)
Q Consensus 278 ~~~~l~~-~l~~kr~LlVlDdv~ 299 (1112)
..+.... .-.+++.+|++|++.
T Consensus 243 v~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 243 VIEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHHHcCCCeEEEEEChh
Confidence 1111111 236899999999993
No 125
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=1.5e-06 Score=77.27 Aligned_cols=101 Identities=18% Similarity=0.218 Sum_probs=57.2
Q ss_pred ccEEEeccccccccccc---ccCCCcCcEEEcccccccccccccc-CCCCCcEEeecCCCCCcccCccccCCccccEEee
Q 047598 594 LRVLSLQRYYIGELLVS---FEDLKLLRYLNLADTMIRTLPESTN-SLLNLEILILRNCSRLKKLPSKMRNLINLHHLDI 669 (1112)
Q Consensus 594 L~~L~L~~~~~~~lp~~---~~~l~~Lr~L~Ls~n~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 669 (1112)
+..++|+.|.+..+++. +....+|...+|++|.++.+|+.|. +.+.+.+|+|++| .+..+|.++..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 44455666655544433 3444455555666666666666554 3346666666665 56666666666666666666
Q ss_pred cCCCccccCCCCCCCCCCCCccCeeee
Q 047598 670 KGANLLREMPLGMKELKNLRTLSNFIV 696 (1112)
Q Consensus 670 ~~~~~l~~lp~~i~~l~~L~~L~~~~~ 696 (1112)
+.|. +...|..|..|.+|-.|+.-++
T Consensus 108 ~~N~-l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 108 RFNP-LNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccCc-cccchHHHHHHHhHHHhcCCCC
Confidence 6665 4455555555555555554443
No 126
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=7.1e-07 Score=89.82 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=23.0
Q ss_pred CCceeEEEEcCcCCCCC--CCCCCCCCCcceEEecCCCC
Q 047598 801 FSKMEVLKLENCWNCTS--LPSLGLLSSLRELTIQGLTK 837 (1112)
Q Consensus 801 l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~ 837 (1112)
+++|.+|+|++|..... +..+.+++.|++|.++.|..
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 66777777777655432 22455666777777776653
No 127
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.0011 Score=76.57 Aligned_cols=184 Identities=14% Similarity=0.102 Sum_probs=105.7
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc----------------CCCCc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK----------------DFKFD 241 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----------------~~~F~ 241 (1112)
..++|.+..+..+..++.. +.-.....++|+.|+||||+|+.++...--... .+.|.
T Consensus 16 ~diiGq~~i~~~L~~~i~~-------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~ 88 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKL-------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFP 88 (486)
T ss_pred HHccChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCC
Confidence 4688999999999998865 123456678999999999999998775321000 00111
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCc
Q 047598 242 IKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKT-AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNS 320 (1112)
Q Consensus 242 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 320 (1112)
..+++..+....+. +...+...+.. -..+++-++|+|++........+.+...+....+..
T Consensus 89 d~~eidaas~~gvd------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~ 150 (486)
T PRK14953 89 DLIEIDAASNRGID------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRT 150 (486)
T ss_pred cEEEEeCccCCCHH------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 12222211111111 11121111111 123566799999997665556666766665544455
Q ss_pred EEEEEc-CChhhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHH
Q 047598 321 KMIITT-RHSHVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAK 390 (1112)
Q Consensus 321 ~iivTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1112)
.+|++| +...+... ......+.+.+++.++....+...+-..+...+ .+.+..|++.++|.+-.+.
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAA 218 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 555554 43333322 123457899999999988888776543322111 2346778888998765443
No 128
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.77 E-value=0.0008 Score=77.17 Aligned_cols=159 Identities=15% Similarity=0.107 Sum_probs=91.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
...+.|+|..|+|||+|++++++..... ..-..+++++. .++...+...+... ..+. +.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~---~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILEN---NPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh---CCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHH
Confidence 4568999999999999999999875422 11123455543 33444555554321 2222 23333
Q ss_pred CCCcEEEEEeCCCCCChh-hHH-HHHhcccC-CCCCcEEEEEcCCh-h--------hhhhcCCCceeeCCCCChHhHHHH
Q 047598 287 DGKRFLLVLDDVWNEDYS-LWV-DLKAPLLA-AAPNSKMIITTRHS-H--------VASTMGPIKHYNLKRLLDEDCWSI 354 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~-~~~-~l~~~l~~-~~~gs~iivTTR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~L 354 (1112)
++ .-+|||||+...... .+. .+...+.. ...|..+|+|+... . +...+.....+.+++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 32 348899999753211 111 12222211 12345688877642 2 223333445789999999999999
Q ss_pred HHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHH
Q 047598 355 FIKHAYESRSLKAHQISELFRKKVVGKCGGLPLA 388 (1112)
Q Consensus 355 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1112)
+.+.+...... .-+++...|++.+.|.+-.
T Consensus 277 l~~~~~~~~~~----l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 277 LQKKAEEEGLE----LPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHcCCC----CCHHHHHHHHHhcCCCHHH
Confidence 99887543321 2244667788888876543
No 129
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00065 Score=77.96 Aligned_cols=155 Identities=17% Similarity=0.100 Sum_probs=92.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCC-ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKF-DIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1112)
..-+.|+|.+|+|||+||+++++..... +. ..++|++. .++...+...+... ..+ .+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~----~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN----EPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHH
Confidence 3459999999999999999999875422 12 24556654 34555665555321 122 23333
Q ss_pred hCCCcEEEEEeCCCCCC-----hhhHHHHHhcccCCCCCcEEEEEcC-Chh--------hhhhcCCCceeeCCCCChHhH
Q 047598 286 VDGKRFLLVLDDVWNED-----YSLWVDLKAPLLAAAPNSKMIITTR-HSH--------VASTMGPIKHYNLKRLLDEDC 351 (1112)
Q Consensus 286 l~~kr~LlVlDdv~~~~-----~~~~~~l~~~l~~~~~gs~iivTTR-~~~--------v~~~~~~~~~~~l~~L~~~~~ 351 (1112)
...+.-+|++||+.... ...+..+...+.. .|..||+||. .+. +...+...-.+.+++.+.++-
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 33345689999996421 1112222222222 3457888875 332 222334456789999999999
Q ss_pred HHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch
Q 047598 352 WSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 352 ~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1112)
.+++.+.+...... .-+++...|++.+.|..
T Consensus 269 ~~IL~~~~~~~~~~----l~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 269 KKIARKMLEIEHGE----LPEEVLNFVAENVDDNL 299 (440)
T ss_pred HHHHHHHHHhcCCC----CCHHHHHHHHhccccCH
Confidence 99998887533221 22446777888887754
No 130
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.0008 Score=82.26 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=109.0
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc-----C--------------C
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK-----D--------------F 238 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----~--------------~ 238 (1112)
..++|.+..++.|..++.. +.-...+.++|..|+||||+|+.+.+..--... + .
T Consensus 15 ~eiiGqe~v~~~L~~~i~~-------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~ 87 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDS-------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPG 87 (824)
T ss_pred HHhcCcHHHHHHHHHHHHh-------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCC
Confidence 4688999999999998865 122356789999999999999998776531100 0 0
Q ss_pred CCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHH-HHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCC
Q 047598 239 KFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLK-TAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAA 317 (1112)
Q Consensus 239 ~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 317 (1112)
+++ ++++.......+ +++.++...+. .-..+++-++|||+++......++.|...+..-.
T Consensus 88 ~~d-v~eidaas~~~V------------------d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP 148 (824)
T PRK07764 88 SLD-VTEIDAASHGGV------------------DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP 148 (824)
T ss_pred CCc-EEEecccccCCH------------------HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC
Confidence 111 112211111111 11112111111 1134556688999998877777888888777655
Q ss_pred CCcEEEEEcCC-hhhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH
Q 047598 318 PNSKMIITTRH-SHVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL 387 (1112)
Q Consensus 318 ~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 387 (1112)
..+.+|++|.+ ..+...+ .....|++..++.++..+.+.+.+-..+.. ........|++.++|.+.
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~----id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP----VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHH
Confidence 66666655543 3444332 235688999999999888877654322211 112345678999999774
No 131
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.76 E-value=0.00032 Score=77.80 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=84.8
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
-..++|.+...+.+..++.. +.-..++.++|.+|+||||+|+.+++... .. ...+..+. ... +
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~-------~~~~~~lll~G~~G~GKT~la~~l~~~~~-----~~---~~~i~~~~-~~~-~ 82 (316)
T PHA02544 20 IDECILPAADKETFKSIVKK-------GRIPNMLLHSPSPGTGKTTVAKALCNEVG-----AE---VLFVNGSD-CRI-D 82 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----cc---ceEeccCc-ccH-H
Confidence 35789999999999998864 12346888899999999999999988642 11 12333333 221 1
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHHHHHhcccCCCCCcEEEEEcCChhhh-hh
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNE-DYSLWVDLKAPLLAAAPNSKMIITTRHSHVA-ST 334 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~-~~ 334 (1112)
..+..+..+... ..+.+.+-++|+||+... .......+...+.....++++|+||...... ..
T Consensus 83 ~i~~~l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~ 147 (316)
T PHA02544 83 FVRNRLTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEP 147 (316)
T ss_pred HHHHHHHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHH
Confidence 111111111000 001234567899999755 2222233433344445677888888654311 11
Q ss_pred -cCCCceeeCCCCChHhHHHHHHH
Q 047598 335 -MGPIKHYNLKRLLDEDCWSIFIK 357 (1112)
Q Consensus 335 -~~~~~~~~l~~L~~~~~~~Lf~~ 357 (1112)
.+....+.+...+.++..+++..
T Consensus 148 l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 148 LRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HHhhceEEEeCCCCHHHHHHHHHH
Confidence 11224567777777777666543
No 132
>PRK06620 hypothetical protein; Validated
Probab=97.76 E-value=0.00029 Score=72.18 Aligned_cols=134 Identities=16% Similarity=0.084 Sum_probs=79.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-----~-----~~~~--~~~~~---------------------~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-----A-----YIIK--DIFFN---------------------E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-----C-----EEcc--hhhhc---------------------h-------hHH-
Confidence 5789999999999999999877542 1 1111 00000 0 001
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChh-------hhhhcCCCceeeCCCCChHhHHHHHHHhHh
Q 047598 288 GKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSH-------VASTMGPIKHYNLKRLLDEDCWSIFIKHAY 360 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 360 (1112)
+..-++++||+..........+...+. ..|..||+|++... ..+++...-.++++++++++-..++.+.+.
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 123478899995322112222222222 34668999987432 333444556899999999998888877764
Q ss_pred CCCCCCCchhHHHHHHHHHhhcCCchHH
Q 047598 361 ESRSLKAHQISELFRKKVVGKCGGLPLA 388 (1112)
Q Consensus 361 ~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1112)
...- ..-+++..-|++.+.|.--.
T Consensus 162 ~~~l----~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 162 ISSV----TISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HcCC----CCCHHHHHHHHHHccCCHHH
Confidence 3211 12244677788888775433
No 133
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.74 E-value=0.00021 Score=79.35 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=75.3
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..+++.+...+.+...|.. .+.+.++|++|+|||++|+.+++..... ..|+.+.||++.+.++..++
T Consensus 175 ~d~~i~e~~le~l~~~L~~----------~~~iil~GppGtGKT~lA~~la~~l~~~---~~~~~v~~VtFHpsySYeDF 241 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----------KKNIILQGPPGVGKTFVARRLAYLLTGE---KAPQRVNMVQFHQSYSYEDF 241 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----------CCCEEEECCCCCCHHHHHHHHHHHhcCC---cccceeeEEeecccccHHHH
Confidence 4578889999999998865 2367889999999999999999876543 56888999999998876665
Q ss_pred HHHHHHHhcCCCCCCCC-hHHHHHHHHHHh--CCCcEEEEEeCCCCCChhh-HHHHHh
Q 047598 258 SKALLESITRKPCHLNT-LNEVQVDLKTAV--DGKRFLLVLDDVWNEDYSL-WVDLKA 311 (1112)
Q Consensus 258 ~~~il~~l~~~~~~~~~-~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~-~~~l~~ 311 (1112)
.... ........- .......+.+.- .++++++|+|++...+... +..+..
T Consensus 242 I~G~----rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~ 295 (459)
T PRK11331 242 IQGY----RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMM 295 (459)
T ss_pred hccc----CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhh
Confidence 4322 111101000 011111222222 2468999999997655333 444433
No 134
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.0018 Score=76.11 Aligned_cols=188 Identities=15% Similarity=0.117 Sum_probs=111.5
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc-------------------CC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK-------------------DF 238 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~~ 238 (1112)
..++|.+..++.|..++.. +.-...+.++|+.|+||||+|+.+.+..--... +.
T Consensus 13 ~eivGq~~i~~~L~~~i~~-------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~ 85 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDA-------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPG 85 (584)
T ss_pred HHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCC
Confidence 4688999999999999865 123456789999999999999998875431100 00
Q ss_pred CCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHHHHHhcccCCC
Q 047598 239 KFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA-VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAA 317 (1112)
Q Consensus 239 ~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 317 (1112)
+.+ ++.+..+....+ ++..++...+... ..+++-++|+|++..........+...+....
T Consensus 86 ~~d-vieidaas~~gv------------------d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp 146 (584)
T PRK14952 86 SID-VVELDAASHGGV------------------DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP 146 (584)
T ss_pred Cce-EEEeccccccCH------------------HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC
Confidence 011 111111111111 1122222222111 13456689999998777677777777776555
Q ss_pred CCcEEEEEc-CChhhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch-HHHHHHhh
Q 047598 318 PNSKMIITT-RHSHVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP-LAAKSLGG 394 (1112)
Q Consensus 318 ~gs~iivTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~ 394 (1112)
....+|++| ....+... ......+.+.+++.++..+.+.+.+...+..-+ .+....|++.++|.+ -|+..+-.
T Consensus 147 ~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 147 EHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred CCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 566655555 44444332 223468999999999988888776543322111 234577888999976 45555444
Q ss_pred h
Q 047598 395 L 395 (1112)
Q Consensus 395 ~ 395 (1112)
+
T Consensus 223 l 223 (584)
T PRK14952 223 L 223 (584)
T ss_pred H
Confidence 3
No 135
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.70 E-value=0.00057 Score=77.27 Aligned_cols=181 Identities=14% Similarity=0.104 Sum_probs=97.6
Q ss_pred CcceecchhhHHHHHHHHhcCCCC-----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEK-----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
...+.|+++.++++.+.+..+-.. ..+-...+-|.++|++|+|||++|+++++... ..| +.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~-----~~~-----i~v~~- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATF-----IRVVG- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC-----CCE-----EEeeh-
Confidence 357889999999998876321000 00123345688999999999999999998653 222 22211
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC-----------ChhhHHHHHhcc---cC--
Q 047598 252 FDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNE-----------DYSLWVDLKAPL---LA-- 315 (1112)
Q Consensus 252 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l---~~-- 315 (1112)
..+. ....+ .........+...-...+.+|+||+++.. +......+...+ ..
T Consensus 199 ---~~l~----~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 ---SELV----QKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred ---HHHh----Hhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 11100 01111111222222346789999999642 111112222222 11
Q ss_pred CCCCcEEEEEcCChhhhhh-c----CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCc
Q 047598 316 AAPNSKMIITTRHSHVAST-M----GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGL 385 (1112)
Q Consensus 316 ~~~gs~iivTTR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1112)
...+..||.||...+.... + .-...+.+.+.+.++-.++|..+..+... ...... ..+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVDL----EELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCCH----HHHHHHcCCC
Confidence 1235578888876543221 1 12357899999999999999987654322 112222 4456666553
No 136
>CHL00181 cbbX CbbX; Provisional
Probab=97.69 E-value=0.0017 Score=69.91 Aligned_cols=135 Identities=14% Similarity=0.056 Sum_probs=72.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
..+.++|.+|+||||+|+.+++..... +.-...-|+.++. .+ +.....+.. .......+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~---g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~a-- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKL---GYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKKA-- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHHc--
Confidence 457889999999999999997753211 1111112444441 12 222221110 11112222222
Q ss_pred CCcEEEEEeCCCCC---------ChhhHHHHHhcccCCCCCcEEEEEcCChhhhhhc--------CCCceeeCCCCChHh
Q 047598 288 GKRFLLVLDDVWNE---------DYSLWVDLKAPLLAAAPNSKMIITTRHSHVASTM--------GPIKHYNLKRLLDED 350 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~--------~~~~~~~l~~L~~~~ 350 (1112)
..-+|++|++... ..+.-..+...+.....+.+||+++....+.... .-...+.+.+++.+|
T Consensus 122 -~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 122 -MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred -cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 2348999999642 1122223334444444456777777644332111 123578999999999
Q ss_pred HHHHHHHhHhC
Q 047598 351 CWSIFIKHAYE 361 (1112)
Q Consensus 351 ~~~Lf~~~~~~ 361 (1112)
..+++...+-.
T Consensus 201 l~~I~~~~l~~ 211 (287)
T CHL00181 201 LLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHH
Confidence 99998877644
No 137
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0013 Score=77.67 Aligned_cols=200 Identities=15% Similarity=0.142 Sum_probs=107.6
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEE-eCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVC-ISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~-~~~~~~~~~ 256 (1112)
..++|.+..+..+..++.. +.-...+.++|+.|+||||+|+.+.+..--. ..++...|.. +...++.=.
T Consensus 16 ~eivGQe~i~~~L~~~i~~-------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~---~~~~~~~~~~~~~~~Cg~C~ 85 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRM-------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ---RMIDDPVYLQEVTEPCGECE 85 (620)
T ss_pred HHhcCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCC---CcCCccccccccCCCCccCH
Confidence 4688999999998888854 1223558899999999999998887654221 0000000000 000000000
Q ss_pred HHHHHHHHhcCC-----CCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEc-
Q 047598 257 ISKALLESITRK-----PCHLNTLNEVQVDLKTA----VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITT- 326 (1112)
Q Consensus 257 ~~~~il~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT- 326 (1112)
.-+.+...-... .......+++...+... ..+++-++|+|+++.......+.+...+......+.+|++|
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 011110000000 00111123322221111 23455678999997766666777777766554555655444
Q ss_pred CChhhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH-HHHH
Q 047598 327 RHSHVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL-AAKS 391 (1112)
Q Consensus 327 R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~ 391 (1112)
+...+... ......+++.+++.++....+.+.+...+.. ...+.+..|++.++|..- |+..
T Consensus 166 ~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~----I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 166 ELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ----IDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred ChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHHHHHHH
Confidence 43444332 2345689999999999887777655332211 123356889999999553 4443
No 138
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.0024 Score=73.78 Aligned_cols=180 Identities=12% Similarity=0.101 Sum_probs=108.9
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-cC----------------CCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KD----------------FKF 240 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~----------------~~F 240 (1112)
..++|-+..++.+..++.. +.-..+..++|..|+||||+|+.+.+..--.. .+ .++
T Consensus 14 deiiGqe~v~~~L~~~I~~-------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~ 86 (535)
T PRK08451 14 DELIGQESVSKTLSLALDN-------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHI 86 (535)
T ss_pred HHccCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCC
Confidence 4689999999999988865 12345678999999999999998776532110 00 011
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHHHHhcccCC
Q 047598 241 DIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA----VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAA 316 (1112)
Q Consensus 241 ~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (1112)
+ ++++..+... ..++....+... ..+++-++|+|++..........+...+-..
T Consensus 87 d-v~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp 144 (535)
T PRK08451 87 D-IIEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP 144 (535)
T ss_pred e-EEEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc
Confidence 1 1111111111 122222222110 1245668999999877766777777776655
Q ss_pred CCCcEEEEEcCCh-hhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHH
Q 047598 317 APNSKMIITTRHS-HVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAK 390 (1112)
Q Consensus 317 ~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1112)
...+++|++|.+. .+... ......+++.+++.++....+.+.+-..+.. ..++.+..|++.++|.+--+.
T Consensus 145 p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~----i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 145 PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS----YEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHH
Confidence 5567777766653 22211 1234688999999999888887665433221 123456889999999884443
No 139
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.002 Score=76.67 Aligned_cols=194 Identities=14% Similarity=0.136 Sum_probs=107.5
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++|.+..+..+..++.. + .-...+.++|..|+||||+|+.+++..--. ..... . ...+..-..
T Consensus 16 ~~liGq~~i~~~L~~~l~~------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~---~~~~~-~----~~~Cg~C~~ 80 (620)
T PRK14948 16 DELVGQEAIATTLKNALIS------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCL---NSDKP-T----PEPCGKCEL 80 (620)
T ss_pred hhccChHHHHHHHHHHHHc------C-CCCceEEEECCCCCChHHHHHHHHHHhcCC---CcCCC-C----CCCCcccHH
Confidence 4688999999999888865 1 123467899999999999999998765321 00000 0 001111111
Q ss_pred HHHHHHHhcCC-----CCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC
Q 047598 258 SKALLESITRK-----PCHLNTLNEVQVDLKTA----VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH 328 (1112)
Q Consensus 258 ~~~il~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 328 (1112)
.+.+....... .......++..+.+... ..+++-++|+|++.......+..+...+........+|++|.+
T Consensus 81 C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred HHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 12221111100 00111222222222111 1245668999999876666777777776654445555555544
Q ss_pred h-hhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHH
Q 047598 329 S-HVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAK 390 (1112)
Q Consensus 329 ~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1112)
. .+...+ .....+.+..++.++....+.+.+...+.. ...+.+..|++.++|.+..+.
T Consensus 161 ~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~----is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE----IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 3 333221 234578888999988887777665432211 112356788999999775443
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.64 E-value=0.0014 Score=70.54 Aligned_cols=134 Identities=15% Similarity=0.066 Sum_probs=72.2
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDG 288 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1112)
-+.++|.+|+|||++|+.+++..... +.....-|+.++. .+ ++..+.+.. .......+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~---g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a--- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRL---GYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA--- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc---CCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---
Confidence 57899999999999997776543211 1111112444442 11 222221111 11122222222
Q ss_pred CcEEEEEeCCCCC---------ChhhHHHHHhcccCCCCCcEEEEEcCChhhhhhc--C------CCceeeCCCCChHhH
Q 047598 289 KRFLLVLDDVWNE---------DYSLWVDLKAPLLAAAPNSKMIITTRHSHVASTM--G------PIKHYNLKRLLDEDC 351 (1112)
Q Consensus 289 kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~--~------~~~~~~l~~L~~~~~ 351 (1112)
..-+|+||++..- ..+.+..+...+.....+.+||+++......... . -...+.+.+++.+|-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 2358899999622 1223344445554444556777776543322111 1 135689999999999
Q ss_pred HHHHHHhHhC
Q 047598 352 WSIFIKHAYE 361 (1112)
Q Consensus 352 ~~Lf~~~~~~ 361 (1112)
.+++...+-.
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9998887643
No 141
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.64 E-value=0.00081 Score=71.91 Aligned_cols=162 Identities=15% Similarity=0.087 Sum_probs=80.9
Q ss_pred ceecchhhHHHHHHHHhcC-------CCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 179 AVYGRDKDKARILKMVLST-------DEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
.++|.+..+++|.+..... .......+...-+.++|++|+||||+|+.+++..... +.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~---~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM---NVLSKGHLIEVERA 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc---CcccCCceEEecHH
Confidence 4788888777765432110 0111122345668899999999999999998753211 10011112222211
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC--------hhhHHHHHhcccCCCCCcEEE
Q 047598 252 FDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED--------YSLWVDLKAPLLAAAPNSKMI 323 (1112)
Q Consensus 252 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ii 323 (1112)
++. ...-+ .........+.+. . .-+|++|++..-. .+..+.+...+........+|
T Consensus 84 ----~l~----~~~~g-----~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 84 ----DLV----GEYIG-----HTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred ----Hhh----hhhcc-----chHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 111 11000 0111112222222 2 3488999996421 122233444443333333555
Q ss_pred EEcCChhh----------hhhcCCCceeeCCCCChHhHHHHHHHhHhC
Q 047598 324 ITTRHSHV----------ASTMGPIKHYNLKRLLDEDCWSIFIKHAYE 361 (1112)
Q Consensus 324 vTTR~~~v----------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 361 (1112)
+++...+. .+.+ ...+.+++++.++-.+++.+.+..
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred ecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHH
Confidence 55543322 1121 245788999999999999877643
No 142
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0018 Score=74.47 Aligned_cols=186 Identities=16% Similarity=0.143 Sum_probs=106.7
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc------------------CCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK------------------DFK 239 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~~~ 239 (1112)
..++|.+..+..+.+++.. +.-...+.++|..|+||||+|+.+.+..--... +.+
T Consensus 17 ~diiGq~~~v~~L~~~i~~-------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRF-------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTS 89 (451)
T ss_pred HHhcCcHHHHHHHHHHHHc-------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCC
Confidence 4788999999999998865 122356788999999999999888765421100 011
Q ss_pred CceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHH-HHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCC
Q 047598 240 FDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLK-TAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAP 318 (1112)
Q Consensus 240 F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 318 (1112)
++. +++.-.....+. +..+....+. .-..+++-++|+|++........+.+...+.....
T Consensus 90 ~d~-~~i~g~~~~gid------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~ 150 (451)
T PRK06305 90 LDV-LEIDGASHRGIE------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQ 150 (451)
T ss_pred Cce-EEeeccccCCHH------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCC
Confidence 111 111100111111 1111111111 11235667899999976554555566666655445
Q ss_pred CcEEEEEcCC-hhhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch-HHHHHHh
Q 047598 319 NSKMIITTRH-SHVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP-LAAKSLG 393 (1112)
Q Consensus 319 gs~iivTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 393 (1112)
+..+|++|.. ..+... ......+++.++++++....+...+-..+.. ...+.+..|++.++|.+ .|+..+-
T Consensus 151 ~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~----i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 151 HVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE----TSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred CceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6666666643 333222 1234578999999999888877765432211 12335688999999965 4444443
No 143
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.63 E-value=1.9e-05 Score=81.98 Aligned_cols=95 Identities=25% Similarity=0.268 Sum_probs=63.9
Q ss_pred hhhhccCCCcceeccccccCCcccccccccccccccccCCcccEEEeccccc----ccccc-------cccCCCcCcEEE
Q 047598 553 FEVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYI----GELLV-------SFEDLKLLRYLN 621 (1112)
Q Consensus 553 ~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~----~~lp~-------~~~~l~~Lr~L~ 621 (1112)
.+....+..+..+.+.++..+.-. .......+.+.+.|+.-++++-.. ..+|+ .+-++++|++||
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EA----a~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEA----ARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHH----HHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 345556777888887776422111 123344566778999999987532 33443 356778999999
Q ss_pred ccccccc-c----ccccccCCCCCcEEeecCCCCCc
Q 047598 622 LADTMIR-T----LPESTNSLLNLEILILRNCSRLK 652 (1112)
Q Consensus 622 Ls~n~i~-~----lp~~i~~L~~L~~L~L~~~~~l~ 652 (1112)
||+|-+. . +-+-+..+..|+.|.|.+| .++
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg 133 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLG 133 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcC-CCC
Confidence 9999776 2 2233567899999999999 454
No 144
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.62 E-value=0.0031 Score=66.99 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=103.5
Q ss_pred CCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHH
Q 047598 176 TERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVL 255 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 255 (1112)
.++.+.+|+.+...+...+.. .. ..-...|.|+|-.|.|||.+.+++.+.... ..+|+++-+.++..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~-~~----~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~--------~~vw~n~~ecft~~ 70 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGN-NS----CTIPSIVHIYGHSGTGKTYLVRQLLRKLNL--------ENVWLNCVECFTYA 70 (438)
T ss_pred cccCccchHHHHHHHHHHhCC-CC----cccceeEEEeccCCCchhHHHHHHHhhcCC--------cceeeehHHhccHH
Confidence 356788999999999888754 11 123456789999999999999999987632 35799999999999
Q ss_pred HHHHHHHHHhcCCCCCCCChH-------HHHHHHHH--HhC--CCcEEEEEeCCCCCChhhHHHH-Hhc---cc-CCCCC
Q 047598 256 SISKALLESITRKPCHLNTLN-------EVQVDLKT--AVD--GKRFLLVLDDVWNEDYSLWVDL-KAP---LL-AAAPN 319 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~-------~~~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~~~l-~~~---l~-~~~~g 319 (1112)
.++..|+.+.+....+....+ .....+.+ ... ++.++||||+++... +.+.+ ... +. -....
T Consensus 71 ~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--D~~a~ll~~l~~L~el~~~~ 148 (438)
T KOG2543|consen 71 ILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--DMDAILLQCLFRLYELLNEP 148 (438)
T ss_pred HHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--ccchHHHHHHHHHHHHhCCC
Confidence 999999999863332222111 12222222 222 458999999996432 11111 111 11 11122
Q ss_pred cEEEEEcCChhhhhh---cCCC--ceeeCCCCChHhHHHHHHHh
Q 047598 320 SKMIITTRHSHVAST---MGPI--KHYNLKRLLDEDCWSIFIKH 358 (1112)
Q Consensus 320 s~iivTTR~~~v~~~---~~~~--~~~~l~~L~~~~~~~Lf~~~ 358 (1112)
.-+|+++.-.-.... +|.. .++....-+.+|-.+++.+.
T Consensus 149 ~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 149 TIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 344555443322221 2332 34566778888888888653
No 145
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.62 E-value=0.00058 Score=84.11 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=86.0
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++||+.+++++++.|.. ....=+.++|.+|+|||++|+.+++...... +....+..+|. + +...
T Consensus 182 ~~~igr~~ei~~~~~~L~~--------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~ 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCR--------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGS 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHH
Confidence 3689999999999998865 1222356999999999999999988652210 00111333442 1 1111
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCCC--------hhhHHHHHhcccCCCCCcEEEEEcC
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAV-DGKRFLLVLDDVWNED--------YSLWVDLKAPLLAAAPNSKMIITTR 327 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTTR 327 (1112)
+ +.. .. ...+.++....+.+.+ ..++.+|++|++.... ..+-.++..+....+ .-++|-+|.
T Consensus 249 l----~a~---~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt 319 (731)
T TIGR02639 249 L----LAG---TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTT 319 (731)
T ss_pred H----hhh---cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecC
Confidence 1 100 00 0112333333333333 3468899999986211 011122332222221 234555555
Q ss_pred Chhhhh-------hcCCCceeeCCCCChHhHHHHHHHhH
Q 047598 328 HSHVAS-------TMGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 328 ~~~v~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
..+... ...-...+.+++++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 322111 01123578999999999999998654
No 146
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.0024 Score=76.03 Aligned_cols=181 Identities=16% Similarity=0.166 Sum_probs=109.2
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccc------------------ccCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLN------------------AKDFK 239 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~~~ 239 (1112)
..++|.+..++.+..++.. +.-...+.++|..|+||||+|+.+.+..--. ..+.+
T Consensus 17 ~~viGq~~~~~~L~~~i~~-------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIAT-------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRS 89 (614)
T ss_pred HHhcCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCC
Confidence 4688999999999999865 1234568899999999999998877654210 00123
Q ss_pred CceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCC
Q 047598 240 FDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPN 319 (1112)
Q Consensus 240 F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 319 (1112)
|+.. .+..+....+.+ .+.+++++.... ..+++=++|+|++.......++.+...+.....+
T Consensus 90 ~n~~-~ld~~~~~~vd~-Ir~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 90 YNIH-ELDAASNNSVDD-IRNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred CceE-EecccccCCHHH-HHHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 3321 222221111111 122222221110 1234558899999877666777787777665556
Q ss_pred cEEEEEc-CChhhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH
Q 047598 320 SKMIITT-RHSHVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL 387 (1112)
Q Consensus 320 s~iivTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 387 (1112)
+.+|++| +...+... ......+++.+++.++....+.+.+-..+.. ...+.+..|++.++|..-
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~----i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT----AEPEALNVIAQKADGGMR 217 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHH
Confidence 6655544 44444433 2234678999999999988887765433221 112356788999999664
No 147
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.61 E-value=0.0019 Score=74.98 Aligned_cols=179 Identities=15% Similarity=0.112 Sum_probs=102.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
..-+.|+|..|+|||+||+++++..... ..-..+++++.. ++...+...+... .. ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~---~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEK---NPNAKVVYVTSE------KFTNDFVNALRNN-----TM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh---CCCCeEEEEEHH------HHHHHHHHHHHcC-----cH----HHHHHHH
Confidence 4568999999999999999999876422 111234455443 3334444444321 12 2233333
Q ss_pred CCCcEEEEEeCCCCCChh-hH-HHHHh---cccCCCCCcEEEEEcCCh---------hhhhhcCCCceeeCCCCChHhHH
Q 047598 287 DGKRFLLVLDDVWNEDYS-LW-VDLKA---PLLAAAPNSKMIITTRHS---------HVASTMGPIKHYNLKRLLDEDCW 352 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~-~~-~~l~~---~l~~~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~ 352 (1112)
+ +.-+|||||+...... .+ +.+.. .+.. .|..||+||... .+.+.+.....+++++.+.++-.
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHE--AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH--CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 3 2448999999643211 11 12222 2222 345688887643 12334445567899999999999
Q ss_pred HHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHH----HHHhhh--hcCC--CHHHHHHHHhc
Q 047598 353 SIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAA----KSLGGL--LRTT--RCDLWEDILDS 410 (1112)
Q Consensus 353 ~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai----~~~~~~--l~~~--~~~~w~~~l~~ 410 (1112)
+++.+.+-.... ..-+++...|++.+.|..-.+ ..+..+ +.++ +.+..+.++..
T Consensus 287 ~il~~~~~~~~~----~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 287 AILKKKAEEEGI----DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHHHHHHHHcCC----CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 999998754322 122346788888888865533 222222 1222 55666666654
No 148
>PF14516 AAA_35: AAA-like domain
Probab=97.59 E-value=0.0085 Score=66.27 Aligned_cols=202 Identities=12% Similarity=0.087 Sum_probs=118.9
Q ss_pred CCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC----
Q 047598 176 TERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV---- 251 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~---- 251 (1112)
+.+..|+|...-+++.+.+.. .-..+.|.|+-.+|||+|...+.+..+.. .+ .++++++...
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~---------~G~~~~I~apRq~GKTSll~~l~~~l~~~----~~-~~v~id~~~~~~~~ 74 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQ---------PGSYIRIKAPRQMGKTSLLLRLLERLQQQ----GY-RCVYIDLQQLGSAI 74 (331)
T ss_pred CCCcccCchHHHHHHHHHHhc---------CCCEEEEECcccCCHHHHHHHHHHHHHHC----CC-EEEEEEeecCCCcc
Confidence 445677888677777777754 13489999999999999999988776432 23 4557776542
Q ss_pred -CCHHHHHHHHHHHhcCCCCC-----------CCChHHHHHHHHHHh---CCCcEEEEEeCCCCCCh-----hhHHHHHh
Q 047598 252 -FDVLSISKALLESITRKPCH-----------LNTLNEVQVDLKTAV---DGKRFLLVLDDVWNEDY-----SLWVDLKA 311 (1112)
Q Consensus 252 -~~~~~~~~~il~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~-----~~~~~l~~ 311 (1112)
.+....++.+...+...-.- ..........+.+.+ .+++.+|++|+++..-. .++-.+..
T Consensus 75 ~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR 154 (331)
T PF14516_consen 75 FSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLR 154 (331)
T ss_pred cCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHH
Confidence 24555666665555432210 111122223343332 26899999999974221 12222222
Q ss_pred cccCCC-----CCcEEEEEcCChh--h-hhh----cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHH
Q 047598 312 PLLAAA-----PNSKMIITTRHSH--V-AST----MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVV 379 (1112)
Q Consensus 312 ~l~~~~-----~gs~iivTTR~~~--v-~~~----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~ 379 (1112)
.+.... ..+-.+|...+.. . ... ......+.|.+++.+|...|...+-... .. ...++|.
T Consensus 155 ~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~~----~~~~~l~ 226 (331)
T PF14516_consen 155 SWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----SQ----EQLEQLM 226 (331)
T ss_pred HHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----CH----HHHHHHH
Confidence 221111 1111222222111 1 111 1234578999999999999988764221 11 1268899
Q ss_pred hhcCCchHHHHHHhhhhcCC
Q 047598 380 GKCGGLPLAAKSLGGLLRTT 399 (1112)
Q Consensus 380 ~~c~glPlai~~~~~~l~~~ 399 (1112)
..+||+|.-+..++..+...
T Consensus 227 ~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 227 DWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred HHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999765
No 149
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.0034 Score=73.11 Aligned_cols=154 Identities=12% Similarity=0.065 Sum_probs=91.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
..+.|+|..|+|||.|++++++..... ..-..+++++. .++...+...+... .. ..+++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~---~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL---YPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh---CCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhh
Confidence 458999999999999999999875321 11123445543 33444444443221 11 22333333
Q ss_pred CCcEEEEEeCCCCCCh-hhHHH----HHhcccCCCCCcEEEEEcCCh---------hhhhhcCCCceeeCCCCChHhHHH
Q 047598 288 GKRFLLVLDDVWNEDY-SLWVD----LKAPLLAAAPNSKMIITTRHS---------HVASTMGPIKHYNLKRLLDEDCWS 353 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~-~~~~~----l~~~l~~~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 353 (1112)
. -=+|||||+..... ..|.. +...+. ..|..|||||+.. .+.+.+...-.+.+++.+.+.-.+
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 3 34788999975422 22322 222222 2355688888753 234455566789999999999999
Q ss_pred HHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch
Q 047598 354 IFIKHAYESRSLKAHQISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 354 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1112)
++.+++....-.- -+++.+-|++.+.+..
T Consensus 454 IL~kka~~r~l~l----~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 454 ILRKKAVQEQLNA----PPEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHHHhcCCCC----CHHHHHHHHHhccCCH
Confidence 9998875433211 2345666777766543
No 150
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.0013 Score=75.21 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=87.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
..-+.|+|..|+|||+|++++++..... ...+++++. ..+...+...+... . ...++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~-----~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES-----GGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc-----CCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHc
Confidence 4568899999999999999999875321 123344442 33444555554321 1 12333333
Q ss_pred CCCcEEEEEeCCCCCChhhH--HHHHhcccC-CCCCcEEEEEcCCh---------hhhhhcCCCceeeCCCCChHhHHHH
Q 047598 287 DGKRFLLVLDDVWNEDYSLW--VDLKAPLLA-AAPNSKMIITTRHS---------HVASTMGPIKHYNLKRLLDEDCWSI 354 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~L 354 (1112)
+ ..-+|++||+.......| +.+...+.. ...|..||+||... .+...+...-.+.+.+++.++-..+
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 345888899865321111 122222111 01355788888542 2233444557889999999999999
Q ss_pred HHHhHhCCCCCCCchhHHHHHHHHHhhcCC
Q 047598 355 FIKHAYESRSLKAHQISELFRKKVVGKCGG 384 (1112)
Q Consensus 355 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 384 (1112)
+.+++-..... .-+++..-|++.+.|
T Consensus 280 L~~k~~~~~~~----l~~evl~~la~~~~~ 305 (445)
T PRK12422 280 LERKAEALSIR----IEETALDFLIEALSS 305 (445)
T ss_pred HHHHHHHcCCC----CCHHHHHHHHHhcCC
Confidence 98877543321 123345556666654
No 151
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.54 E-value=0.00027 Score=87.54 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=86.2
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEE-EEeCCCCCHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAW-VCISDVFDVL 255 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~w-v~~~~~~~~~ 255 (1112)
..++||+.++.+++..|.. ....-+.++|.+|+||||+|+.+.+...... ...-.+..+| +.++.-..
T Consensus 187 d~~iGr~~ei~~~i~~l~r--------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a-- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLR--------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA-- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhc--------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc--
Confidence 4689999999999998865 1223456999999999999999988652110 0011223333 22221000
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHh--CCCcEEEEEeCCCCCC-------hhhHHHHHhcccCCCCCcEEEEEc
Q 047598 256 SISKALLESITRKPCHLNTLNEVQVDLKTAV--DGKRFLLVLDDVWNED-------YSLWVDLKAPLLAAAPNSKMIITT 326 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~iivTT 326 (1112)
.. ....+.+.....+...+ .+++.+|++|++.... ..+-..+..+.... ..-++|-||
T Consensus 257 -----------g~-~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaT 323 (852)
T TIGR03345 257 -----------GA-SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAAT 323 (852)
T ss_pred -----------cc-ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEec
Confidence 00 00111111122222211 2568999999985421 11112233333222 234666666
Q ss_pred CChhhhhh-------cCCCceeeCCCCChHhHHHHHHHhH
Q 047598 327 RHSHVAST-------MGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 327 R~~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
...+.... ......+.+++++.++..+++....
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 65332111 1223579999999999999975433
No 152
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.46 E-value=0.00035 Score=66.06 Aligned_cols=23 Identities=43% Similarity=0.512 Sum_probs=20.7
Q ss_pred EEEEccCCCcHHHHHHHHhcccc
Q 047598 210 IPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 210 v~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57899999999999999998753
No 153
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.0085 Score=60.51 Aligned_cols=180 Identities=18% Similarity=0.226 Sum_probs=104.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeC-CCCCHHHHHHHHHHHhcCCCCCCCChH----HHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCIS-DVFDVLSISKALLESITRKPCHLNTLN----EVQ 279 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~il~~l~~~~~~~~~~~----~~~ 279 (1112)
.+.+++.++|.-|+|||.++++...... -+.++-|.++ ...+...+...++..+.... ..... +..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~-------~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~ 119 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN-------EDQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQID 119 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC-------CCceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHH
Confidence 3456999999999999999995544321 1112223333 45567778888888887632 22223 223
Q ss_pred HHHHHHh-CCCc-EEEEEeCCCCCChhhHHHHHhcccCCCCCc---EEEEEcCCh---h----hhhhcC-CCce-eeCCC
Q 047598 280 VDLKTAV-DGKR-FLLVLDDVWNEDYSLWVDLKAPLLAAAPNS---KMIITTRHS---H----VASTMG-PIKH-YNLKR 345 (1112)
Q Consensus 280 ~~l~~~l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~iivTTR~~---~----v~~~~~-~~~~-~~l~~ 345 (1112)
..+.... +++| ..+++|+..+......+.++....-...++ +|+..-.-+ . +....+ .... |++.|
T Consensus 120 ~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 120 RELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 3333332 5677 899999997766555555443322111122 233322211 0 011111 1123 89999
Q ss_pred CChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhh
Q 047598 346 LLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGG 394 (1112)
Q Consensus 346 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 394 (1112)
++.++...++..+..+...+ .+-.-.+....|.....|.|.+|..++.
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred cChHHHHHHHHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99998888887776554332 2222234557788999999999987763
No 154
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0055 Score=72.90 Aligned_cols=186 Identities=17% Similarity=0.173 Sum_probs=106.7
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc-----------------CCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK-----------------DFKF 240 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~~~F 240 (1112)
..++|.+..+..+..++.. +.-...+.++|..|+||||+|+.+.+..--... +.++
T Consensus 16 ~~iiGq~~v~~~L~~~i~~-------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~ 88 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDT-------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSV 88 (576)
T ss_pred HHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCC
Confidence 4789999999999988865 122456789999999999999988775421100 0011
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCC
Q 047598 241 DIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA-VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPN 319 (1112)
Q Consensus 241 ~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 319 (1112)
+. +.+.......+ ++..++...+... ..+++-++|+|++..........+...+-.....
T Consensus 89 d~-~eid~~s~~~v------------------~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~ 149 (576)
T PRK14965 89 DV-FEIDGASNTGV------------------DDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPH 149 (576)
T ss_pred Ce-eeeeccCccCH------------------HHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCC
Confidence 11 11110111111 1122222222111 1345568899999776666677777766554456
Q ss_pred cEEEEEc-CChhhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch-HHHHHHh
Q 047598 320 SKMIITT-RHSHVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP-LAAKSLG 393 (1112)
Q Consensus 320 s~iivTT-R~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 393 (1112)
+.+|++| ....+.... .....+++.+++.++....+...+-..+.. ...+....|++.++|.. .|+..+-
T Consensus 150 ~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~----i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 150 VKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS----ISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred eEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6666555 444444322 234678899999998887776655332211 11335677888998855 4555543
No 155
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.44 E-value=0.0065 Score=71.55 Aligned_cols=191 Identities=16% Similarity=0.158 Sum_probs=108.8
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++|.+..+..+..++.. +.-.+.+.++|..|+||||+|+.+.+..--......+.| ....+-
T Consensus 16 ~diiGqe~iv~~L~~~i~~-------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC------~~C~~C--- 79 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIES-------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC------GECSSC--- 79 (563)
T ss_pred HHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC------ccchHH---
Confidence 4789999999999999865 123457889999999999999999876421100000000 000000
Q ss_pred HHHHHHHhcC-----CCCCCCChHHHHH---HHHH-HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC
Q 047598 258 SKALLESITR-----KPCHLNTLNEVQV---DLKT-AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH 328 (1112)
Q Consensus 258 ~~~il~~l~~-----~~~~~~~~~~~~~---~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 328 (1112)
+.+...-.. ........++... .+.. -..+++-++|+|++.......++.+...+......+.+|.+|..
T Consensus 80 -~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 80 -KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred -HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 011000000 0000112222221 1111 12356668999999877666777777776654456666666543
Q ss_pred -hhhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHH
Q 047598 329 -SHVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAA 389 (1112)
Q Consensus 329 -~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1112)
..+... ......+++.+++.++..+.+.+.+...+.. ...+.+..|++.++|.+-.+
T Consensus 159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 333322 1234568999999999888887766433221 12345677889999977433
No 156
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.43 E-value=1.7e-05 Score=70.69 Aligned_cols=91 Identities=27% Similarity=0.270 Sum_probs=72.6
Q ss_pred cccCCcccEEEecccccccccccccC-CCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccE
Q 047598 588 LPKFKRLRVLSLQRYYIGELLVSFED-LKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHH 666 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~lp~~~~~-l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 666 (1112)
+.+...|...+|++|.+..+|..|.. .+-+..|+|++|.|..+|..+..++.|+.|+++.| .+...|..|..|.+|-+
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 34556677888999988888877644 44788899999999999988888999999999987 77788888888888888
Q ss_pred EeecCCCccccCCC
Q 047598 667 LDIKGANLLREMPL 680 (1112)
Q Consensus 667 L~L~~~~~l~~lp~ 680 (1112)
|+..+|. ...+|-
T Consensus 128 Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 128 LDSPENA-RAEIDV 140 (177)
T ss_pred hcCCCCc-cccCcH
Confidence 8888776 455553
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.42 E-value=0.00085 Score=83.71 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=85.7
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++||+++++++++.|.. ....-+.++|.+|+|||++|+.++....... +...-+..+|. + +...
T Consensus 179 ~~~igr~~ei~~~~~~L~r--------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~ 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGR--------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGL 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHcc--------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHH
Confidence 3589999999999999965 1222446999999999999999988653110 00011234442 1 1111
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCC-------ChhhHHHHHhcccCCCCCcEEEEEcCC
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAV-DGKRFLLVLDDVWNE-------DYSLWVDLKAPLLAAAPNSKMIITTRH 328 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~-------~~~~~~~l~~~l~~~~~gs~iivTTR~ 328 (1112)
++ .+.. ...+.++....+.+.+ ..++.+|++|++..- ....-..+..+....+ .-++|.+|..
T Consensus 246 l~-------ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~ 316 (821)
T CHL00095 246 LL-------AGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTL 316 (821)
T ss_pred Hh-------ccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCH
Confidence 11 1111 1122333333333222 356899999999521 0011223333332222 2356666655
Q ss_pred hhhhhh-------cCCCceeeCCCCChHhHHHHHHH
Q 047598 329 SHVAST-------MGPIKHYNLKRLLDEDCWSIFIK 357 (1112)
Q Consensus 329 ~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~ 357 (1112)
...... ......+.+...+.++...++..
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 443211 12335678888899988888764
No 158
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=3.7e-05 Score=77.74 Aligned_cols=101 Identities=24% Similarity=0.239 Sum_probs=49.7
Q ss_pred cccEEEecccccccccc--cc-cCCCcCcEEEcccccccc---ccccccCCCCCcEEeecCCCC---CcccCccccCCcc
Q 047598 593 RLRVLSLQRYYIGELLV--SF-EDLKLLRYLNLADTMIRT---LPESTNSLLNLEILILRNCSR---LKKLPSKMRNLIN 663 (1112)
Q Consensus 593 ~L~~L~L~~~~~~~lp~--~~-~~l~~Lr~L~Ls~n~i~~---lp~~i~~L~~L~~L~L~~~~~---l~~lp~~i~~L~~ 663 (1112)
.+..|.+.++.|...-+ .| ..+.+++.|||.+|.|+. +-.-+.+|+.|++|+|+.|+. +..+| ..+.+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccc
Confidence 33445555555433221 12 334566677777766652 322345667777777766532 12222 23456
Q ss_pred ccEEeecCCCccc-cCCCCCCCCCCCCccCeeee
Q 047598 664 LHHLDIKGANLLR-EMPLGMKELKNLRTLSNFIV 696 (1112)
Q Consensus 664 L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~~~~~ 696 (1112)
|+.|-|.|+..-. ..-..+..++.++.|+++.|
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 6777666655211 11122445555555555444
No 159
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.34 E-value=0.0077 Score=61.17 Aligned_cols=126 Identities=19% Similarity=0.211 Sum_probs=72.9
Q ss_pred CCCCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 174 VPTERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 174 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
++.-..++|.+.+++.|++-...-- .+....-+-+||..|.|||++++++.+..... + -..+ .+...
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl----~G~pannvLL~G~rGtGKSSlVkall~~y~~~---G--LRlI--ev~k~-- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFL----QGLPANNVLLWGARGTGKSSLVKALLNEYADQ---G--LRLI--EVSKE-- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHH----cCCCCcceEEecCCCCCHHHHHHHHHHHHhhc---C--ceEE--EECHH--
Confidence 3445689999999999877543210 12344567789999999999999999876433 1 1122 22111
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHHHHHhcccCC---CCCc-EEEEEcCC
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNE-DYSLWVDLKAPLLAA---APNS-KMIITTRH 328 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~gs-~iivTTR~ 328 (1112)
+..++..+...++. ...||+|++||+.-+ ....+..++..+..+ .|.. .|-+||..
T Consensus 90 -----------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 90 -----------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred -----------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 12233333444442 357999999998533 234555566555432 2333 34445544
Q ss_pred hhh
Q 047598 329 SHV 331 (1112)
Q Consensus 329 ~~v 331 (1112)
+++
T Consensus 151 RHL 153 (249)
T PF05673_consen 151 RHL 153 (249)
T ss_pred hhc
Confidence 444
No 160
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.34 E-value=6.4e-06 Score=92.89 Aligned_cols=108 Identities=24% Similarity=0.202 Sum_probs=64.2
Q ss_pred ccccCCcccEEEecccccccccccccCCCcCcEEEcccccccccccc-ccCCCCCcEEeecCCCCCcccCccccCCcccc
Q 047598 587 LLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPES-TNSLLNLEILILRNCSRLKKLPSKMRNLINLH 665 (1112)
Q Consensus 587 ~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 665 (1112)
.+.-++.|+.|||++|++...- .+..|++|+.|||++|.+..+|.- ...+ +|+.|+|++| .++.+- ++.+|.+|+
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~-gie~LksL~ 257 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLR-GIENLKSLY 257 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhh-hHHhhhhhh
Confidence 3445566777777777766553 566677777777777777766542 1222 3777777776 555553 366777777
Q ss_pred EEeecCCCccccCC-CCCCCCCCCCccCeeeecc
Q 047598 666 HLDIKGANLLREMP-LGMKELKNLRTLSNFIVGK 698 (1112)
Q Consensus 666 ~L~L~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~ 698 (1112)
.||+++|-+...-- .-++.|..|..|++-+|..
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 77777765221100 1145556666666666543
No 161
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.34 E-value=0.0016 Score=73.57 Aligned_cols=161 Identities=17% Similarity=0.131 Sum_probs=89.2
Q ss_pred cceecchhhHHHHHHHHhcCCCC-----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+.|.+..+++|.+.+.-+-.. .-+-...+-+.++|++|+|||++|+++++... ..|- .+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~-----~~fi---~V~~se-- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS-----ATFL---RVVGSE-- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC-----CCEE---EEecch--
Confidence 45789999999888876421000 00112345677999999999999999998653 2331 121111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------h---hhHHHHHhcccC--C
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED-----------Y---SLWVDLKAPLLA--A 316 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~---~~~~~l~~~l~~--~ 316 (1112)
+.. .... .........+.....+.+.+|+||+++... . .....+...+.. .
T Consensus 253 ----L~~----k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 ----LIQ----KYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred ----hhh----hhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 111 1100 111112222333334578899999975310 0 011122222221 1
Q ss_pred CCCcEEEEEcCChhhhhhc-----CCCceeeCCCCChHhHHHHHHHhHhC
Q 047598 317 APNSKMIITTRHSHVASTM-----GPIKHYNLKRLLDEDCWSIFIKHAYE 361 (1112)
Q Consensus 317 ~~gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~ 361 (1112)
..+.+||+||...+..... .....+.+...+.++..++|..+...
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 2356788888765544321 12357899999999999999877643
No 162
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.33 E-value=0.0042 Score=71.43 Aligned_cols=173 Identities=17% Similarity=0.099 Sum_probs=91.0
Q ss_pred cceecchhhHHHHHHHHhcCCCC-----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+.|.+..++++.+.+..+-.. ..+-...+-+.++|++|.|||++|+++++..........+....++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 45788999999988876421000 001123445889999999999999999987642210011223334443321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH-hCCCcEEEEEeCCCCCC-------hhh-----HHHHHhcccCC--C
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTA-VDGKRFLLVLDDVWNED-------YSL-----WVDLKAPLLAA--A 317 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~-----~~~l~~~l~~~--~ 317 (1112)
++ +...... .......+....+.. -.+++++|+||+++..- ..+ ...+...+... .
T Consensus 261 ---eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11 1100000 000111112222221 23578999999997421 011 12233323221 1
Q ss_pred CCcEEEEEcCChhhhhh--c---CCCceeeCCCCChHhHHHHHHHhHh
Q 047598 318 PNSKMIITTRHSHVAST--M---GPIKHYNLKRLLDEDCWSIFIKHAY 360 (1112)
Q Consensus 318 ~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~ 360 (1112)
.+..||.||...+.... . .-...+.+...+.++..++|..+..
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 34456667765543321 1 1234689999999999999998763
No 163
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.31 E-value=0.0022 Score=77.87 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=88.4
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccc-ccCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLN-AKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++||+.+++++++.|.. . ...-+.++|.+|+|||++|+.++...... .+....++.+|.. +...
T Consensus 186 ~~liGR~~ei~~~i~iL~r-~-------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~ 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCR-R-------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhc-c-------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH
Confidence 3589999999999998865 1 12234689999999999999998754211 0001124444421 1111
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCC--------ChhhHHHHHhcccCCCCCcEEEEEcC
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAV-DGKRFLLVLDDVWNE--------DYSLWVDLKAPLLAAAPNSKMIITTR 327 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTTR 327 (1112)
++. +.. ...+.+.....+.+.+ +.++.+|++|++... ...+...+..++...+ .-++|-+|.
T Consensus 253 ----lla---G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt 323 (758)
T PRK11034 253 ----LLA---GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTT 323 (758)
T ss_pred ----Hhc---ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCC
Confidence 110 000 1112233333333333 345789999999631 1223333444444322 335555555
Q ss_pred Chhhhhh-------cCCCceeeCCCCChHhHHHHHHHhH
Q 047598 328 HSHVAST-------MGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 328 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
..+.... ..-...+.+++++.++..+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4432111 1123578999999999999987653
No 164
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.31 E-value=0.0018 Score=76.42 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=41.6
Q ss_pred CCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 176 TERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.-..++|.+..++++..++..... .....+++.|+|++|+||||+++.++...
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~---~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVL---ENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccc---ccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999865221 12344689999999999999999998764
No 165
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=1.1e-05 Score=91.01 Aligned_cols=105 Identities=23% Similarity=0.222 Sum_probs=87.8
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCcc-ccCCccccEEeec
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSK-MRNLINLHHLDIK 670 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~ 670 (1112)
..|.+.+.++|.+..+-.++.-++.|+.|||++|++...- .+..|++|++|||++| .+..+|.- ...+. |..|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeec
Confidence 4578888999998888888889999999999999999774 7889999999999998 78888872 22344 9999999
Q ss_pred CCCccccCCCCCCCCCCCCccCeeeeccCCc
Q 047598 671 GANLLREMPLGMKELKNLRTLSNFIVGKGEA 701 (1112)
Q Consensus 671 ~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~ 701 (1112)
+|. ++.+ .+|.+|++|+.|+++.|-+...
T Consensus 241 nN~-l~tL-~gie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 241 NNA-LTTL-RGIENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred ccH-HHhh-hhHHhhhhhhccchhHhhhhcc
Confidence 998 6665 5799999999999998865443
No 166
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.013 Score=63.82 Aligned_cols=199 Identities=16% Similarity=0.113 Sum_probs=111.2
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc----------cCCCCceeEEEE
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA----------KDFKFDIKAWVC 247 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----------~~~~F~~~~wv~ 247 (1112)
..++|.+..++.+...+.. +.-....-++|..|+||+++|..+.+..--.. ......-..|+.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~-------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~ 76 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQ-------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVE 76 (314)
T ss_pred HHhCCHHHHHHHHHHHHHh-------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEe
Confidence 3578999999999998865 12246889999999999999977765432110 001122223442
Q ss_pred eCCCCCHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCc
Q 047598 248 ISDVFDVLSISKALLESIT--RKPCHLNTLNEVQVDLKTAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNS 320 (1112)
Q Consensus 248 ~~~~~~~~~~~~~il~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 320 (1112)
-....+-..+...-++..+ ......-.+++. ..+.+.+ .+++-++|+|+++.........+...+-... .+
T Consensus 77 p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~ 154 (314)
T PRK07399 77 PTYQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NG 154 (314)
T ss_pred ccccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CC
Confidence 2100000001111112221 111111122222 2233322 3567789999998777667777776665433 44
Q ss_pred EEEEEcCC-hhhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 321 KMIITTRH-SHVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 321 ~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
.+|++|.+ ..+.... +-...+.+.++++++..+.+........ ... ....++..++|.|..+..+
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~---~~~----~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI---LNI----NFPELLALAQGSPGAAIAN 221 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---chh----HHHHHHHHcCCCHHHHHHH
Confidence 55555544 3443332 3457899999999999999987642111 011 1357889999999755543
No 167
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.27 E-value=0.0058 Score=68.76 Aligned_cols=160 Identities=17% Similarity=0.117 Sum_probs=89.0
Q ss_pred cceecchhhHHHHHHHHhcC-CC----CCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLST-DE----KTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~-~~----~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+.|.+..+++|.+.+..+ .. ...+-...+-+.++|++|.|||++|+++++... ..| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~-----~~f---i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT-----ATF---IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCE---EEEeh----
Confidence 46889999998888766321 00 000123456788999999999999999998653 223 11111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhh----HHHHHhcccC--C
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED----------YSL----WVDLKAPLLA--A 316 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~ 316 (1112)
..+. ..... .....+...+.......+.+|++|+++... ... +..+...+.. .
T Consensus 213 --s~l~----~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 --SEFV----QKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred --HHHH----HHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 1111 11100 111122223333345678999999986310 011 1222222222 1
Q ss_pred CCCcEEEEEcCChhhhhh--c---CCCceeeCCCCChHhHHHHHHHhHh
Q 047598 317 APNSKMIITTRHSHVAST--M---GPIKHYNLKRLLDEDCWSIFIKHAY 360 (1112)
Q Consensus 317 ~~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~ 360 (1112)
..+..||+||...+.... . .-...+.+...+.++..++|..+..
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 245678888876544322 1 1235688888888888888886653
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.24 E-value=0.0028 Score=79.37 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=84.6
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++||+.++.+++..|.. ....-+.++|.+|+|||++|+.+.+...... +.......+|.. ++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r--------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhc--------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHH
Confidence 3589999999999999865 1223455899999999999999887642110 000112233321 1111
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHh--CCCcEEEEEeCCCCCC-------hhhHHHHHhcccCCCCCcEEEEEcC
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAV--DGKRFLLVLDDVWNED-------YSLWVDLKAPLLAAAPNSKMIITTR 327 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~iivTTR 327 (1112)
+ +. ... ...+.+.....+.+.+ .+++.+|++|++.... ..+-..+..+....+ .-++|-+|.
T Consensus 240 l----~a---~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt 310 (852)
T TIGR03346 240 L----IA---GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATT 310 (852)
T ss_pred H----hh---cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCc
Confidence 1 10 000 0012222223332232 2468999999996321 011222333322221 235555555
Q ss_pred Chhhhhh-------cCCCceeeCCCCChHhHHHHHHHhH
Q 047598 328 HSHVAST-------MGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 328 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
....... ......+.+...+.++..+++....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4433111 1123567889899999999887653
No 169
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.015 Score=68.95 Aligned_cols=191 Identities=14% Similarity=0.118 Sum_probs=105.5
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
-..++|.+..+..+.+++.. +.-.+.+-++|+.|+||||+|+.+.+..--..... ..+++.-.
T Consensus 15 f~~viGq~~v~~~L~~~i~~-------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~----------~~pC~~C~ 77 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQ-------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD----------GEPCNECE 77 (559)
T ss_pred HHhccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC----------CCCCCccH
Confidence 35789999999999999865 12345677899999999999988876532110000 00000000
Q ss_pred HHHHHHHHhcCC-----CCCCCChH---HHHHHHHHH-hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEc-
Q 047598 257 ISKALLESITRK-----PCHLNTLN---EVQVDLKTA-VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITT- 326 (1112)
Q Consensus 257 ~~~~il~~l~~~-----~~~~~~~~---~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT- 326 (1112)
.-+.+....... .......+ ++...+... ..+++-++|+|++.......+..+...+........+|++|
T Consensus 78 ~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt 157 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATT 157 (559)
T ss_pred HHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 111111100000 00011122 222222111 23566788999998766667777776665444455555444
Q ss_pred CChhhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHH
Q 047598 327 RHSHVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLA 388 (1112)
Q Consensus 327 R~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1112)
....+...+ .....+.+.+++.++....+...+-..+..-+ .+....|++.++|.+..
T Consensus 158 ~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 158 EPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRD 216 (559)
T ss_pred ChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 433333221 23457889999999988888776643322111 23567788888887653
No 170
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.011 Score=64.78 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChh-hhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCC
Q 047598 288 GKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSH-VAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSL 365 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 365 (1112)
+++-++|+|+++..+......+...+-....++.+|+||.+.. +... .+-...+.+.+++.+++.+.+..... ..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~-~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP-ES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-cC--
Confidence 3444557799988777777777777765556777777777653 3322 22346789999999999988876531 11
Q ss_pred CCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 366 KAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
. ++.+..++..++|.|.....+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 123456788999999755544
No 171
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.22 E-value=0.0019 Score=61.96 Aligned_cols=88 Identities=20% Similarity=0.063 Sum_probs=47.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
..+.|+|.+|+||||+|+.++...... . ..++++..+........... ...................+....+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP---G--GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC---C--CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999876432 1 23455554443322222111 1111111111222222333333333
Q ss_pred CC-cEEEEEeCCCCCC
Q 047598 288 GK-RFLLVLDDVWNED 302 (1112)
Q Consensus 288 ~k-r~LlVlDdv~~~~ 302 (1112)
.. ..+|++|+++...
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 33 4899999997654
No 172
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.19 E-value=2.6e-05 Score=77.75 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=59.2
Q ss_pred ccCCcccEEEeccccccc-----ccccccCCCcCcEEEccccccc----ccc-------ccccCCCCCcEEeecCCCCCc
Q 047598 589 PKFKRLRVLSLQRYYIGE-----LLVSFEDLKLLRYLNLADTMIR----TLP-------ESTNSLLNLEILILRNCSRLK 652 (1112)
Q Consensus 589 ~~~~~L~~L~L~~~~~~~-----lp~~~~~l~~Lr~L~Ls~n~i~----~lp-------~~i~~L~~L~~L~L~~~~~l~ 652 (1112)
..+..+..++||+|.|+. +...+.+-.+|+..+++.-... ++| +.+-++++|+..+||.|-.-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 347788899999998843 3455667788999998863211 333 345678889999998885444
Q ss_pred ccCc----cccCCccccEEeecCCC
Q 047598 653 KLPS----KMRNLINLHHLDIKGAN 673 (1112)
Q Consensus 653 ~lp~----~i~~L~~L~~L~L~~~~ 673 (1112)
..|. -|++-+.|.||.+++|.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC
Confidence 4444 35667788888888887
No 173
>CHL00176 ftsH cell division protein; Validated
Probab=97.17 E-value=0.0055 Score=73.12 Aligned_cols=179 Identities=15% Similarity=0.176 Sum_probs=95.8
Q ss_pred cceecchhhHHHHHHHH---hcCCC-CCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMV---LSTDE-KTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L---~~~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
..+.|.++.++++.+.+ ..+.. ...+....+-|.++|++|+|||++|++++...... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p----------~i~is~s-- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP----------FFSISGS-- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----------eeeccHH--
Confidence 45778877666655543 32110 00011224458899999999999999998864321 2222211
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhhHHH----HHhcccC--CC
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED----------YSLWVD----LKAPLLA--AA 317 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~ 317 (1112)
++..... + .........+.......+++|++||++... ...+.. +...+.. ..
T Consensus 251 --~f~~~~~---g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 --EFVEMFV---G------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred --HHHHHhh---h------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 1111000 0 011223334445556788999999995321 112222 2222221 23
Q ss_pred CCcEEEEEcCChhhhhh--c---CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCC
Q 047598 318 PNSKMIITTRHSHVAST--M---GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGG 384 (1112)
Q Consensus 318 ~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 384 (1112)
.+-.||.||...+.... . .-...+.+...+.++-.++++.++..... .+ ......+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP----DVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCC
Confidence 45567777766543321 1 12357888888989888999887744211 11 1234567777776
No 174
>PRK08116 hypothetical protein; Validated
Probab=97.16 E-value=0.0017 Score=69.16 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=58.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
.-+.++|..|+|||.||.++++..... ...++++++ .+++..+........ ..+.. .+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-----~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~----~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-----GVPVIFVNF------PQLLNRIKSTYKSSG--KEDEN----EIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEEH------HHHHHHHHHHHhccc--cccHH----HHHHHhc
Confidence 458899999999999999999976422 234555553 344455544433211 11111 2333344
Q ss_pred CCcEEEEEeCCCCCChhhHHH--HHhcccC-CCCCcEEEEEcCC
Q 047598 288 GKRFLLVLDDVWNEDYSLWVD--LKAPLLA-AAPNSKMIITTRH 328 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTTR~ 328 (1112)
+-. ||||||+..+....|.. +...+.. -..|..+||||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 333 89999995444345543 2222221 1245679999975
No 175
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.09 E-value=0.00021 Score=85.70 Aligned_cols=110 Identities=20% Similarity=0.186 Sum_probs=79.5
Q ss_pred hccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEcccccccccc--cc
Q 047598 556 FYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLP--ES 633 (1112)
Q Consensus 556 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp--~~ 633 (1112)
...++.|++|.+.+.. ....-+...+.++++|+.||+|+++++.+ .+++.|++|+.|.+.+-.+..-+ ..
T Consensus 144 g~~LPsL~sL~i~~~~-------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQ-------FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred hhhCcccceEEecCce-------ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHH
Confidence 3468999999886642 11222345577889999999999999887 77899999999999887666322 35
Q ss_pred ccCCCCCcEEeecCCCCCcccCc-------cccCCccccEEeecCCCc
Q 047598 634 TNSLLNLEILILRNCSRLKKLPS-------KMRNLINLHHLDIKGANL 674 (1112)
Q Consensus 634 i~~L~~L~~L~L~~~~~l~~lp~-------~i~~L~~L~~L~L~~~~~ 674 (1112)
+.+|++|++||+|..... ..+. .-..|++||.||.+++..
T Consensus 216 LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence 678999999999985332 2221 112488999999998764
No 176
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.00012 Score=74.30 Aligned_cols=136 Identities=13% Similarity=0.061 Sum_probs=72.9
Q ss_pred CcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcc
Q 047598 854 FQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPN 933 (1112)
Q Consensus 854 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~ 933 (1112)
...++.+++.+ ..+..|.. +...+..+|.|+.|+++. |.|...+-.....+.+|+.+.|+-.+++- .....
T Consensus 70 ~~~v~elDL~~-N~iSdWse------I~~ile~lP~l~~LNls~-N~L~s~I~~lp~p~~nl~~lVLNgT~L~w-~~~~s 140 (418)
T KOG2982|consen 70 VTDVKELDLTG-NLISDWSE------IGAILEQLPALTTLNLSC-NSLSSDIKSLPLPLKNLRVLVLNGTGLSW-TQSTS 140 (418)
T ss_pred hhhhhhhhccc-chhccHHH------HHHHHhcCccceEeeccC-CcCCCccccCcccccceEEEEEcCCCCCh-hhhhh
Confidence 45566666665 22223321 122346799999999987 78774332222244555544443333221 12223
Q ss_pred cCCCCCCcCEEEEecCCCCcccC-----CCCCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccC
Q 047598 934 DMHRLNFLEHLRIGQCPSILSFP-----EEGFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCH 999 (1112)
Q Consensus 934 ~l~~l~~L~~L~L~~~~~l~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 999 (1112)
.+..+|.+++|+++.|+. ..+. .....+.+.+|+...|.-..-......-+-+|++..+.+..|.
T Consensus 141 ~l~~lP~vtelHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhcchhhhhhhhccchh-hhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 466888999999998832 1111 1123456777777777322111111122346777788888776
No 177
>PRK08118 topology modulation protein; Reviewed
Probab=97.08 E-value=0.00028 Score=69.29 Aligned_cols=35 Identities=31% Similarity=0.569 Sum_probs=28.2
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEE
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAW 245 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~w 245 (1112)
.|.|+|++|+||||||+.+++...... .+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~--~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPV--HHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc--eecchhhc
Confidence 588999999999999999998865431 45777775
No 178
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.06 E-value=0.011 Score=57.66 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=76.8
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccC---------------CCCceeEEE
Q 047598 182 GRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKD---------------FKFDIKAWV 246 (1112)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~---------------~~F~~~~wv 246 (1112)
|.+...+.+.+.+.. +.-...+.++|..|+||+++|..+.+..--.... ....-..|+
T Consensus 1 gq~~~~~~L~~~~~~-------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHHHC-------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred CcHHHHHHHHHHHHc-------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence 456667777777754 2234467899999999999998877654221100 011222333
Q ss_pred EeCCC---CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEE
Q 047598 247 CISDV---FDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMI 323 (1112)
Q Consensus 247 ~~~~~---~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 323 (1112)
.-... ..+.++ +++.+.+.... ..+++=++|+||++......+..+...+-....++++|
T Consensus 74 ~~~~~~~~i~i~~i-r~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 74 KPDKKKKSIKIDQI-REIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp ETTTSSSSBSHHHH-HHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ecccccchhhHHHH-HHHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 22221 222221 13333222211 12456689999999888888888888887777788988
Q ss_pred EEcCChh-hhhhc-CCCceeeCCCC
Q 047598 324 ITTRHSH-VASTM-GPIKHYNLKRL 346 (1112)
Q Consensus 324 vTTR~~~-v~~~~-~~~~~~~l~~L 346 (1112)
++|++.. +.... +-...+.+.++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEECChHHChHHHHhhceEEecCCC
Confidence 8888764 33222 23345555554
No 179
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.05 E-value=0.00062 Score=65.51 Aligned_cols=103 Identities=23% Similarity=0.261 Sum_probs=73.1
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEcccccccccccccc-CCCCCcEEeecCCCCCcccCc--cccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTN-SLLNLEILILRNCSRLKKLPS--KMRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~ 668 (1112)
.....+||++|.+..++ .|..++.|..|.|++|+|..+-+.+. .+++|.+|.|.+| .+..+.+ .+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 34567888888876663 47788888999999998888866665 4567899999887 5655543 256788888888
Q ss_pred ecCCCccccCCC----CCCCCCCCCccCeeeec
Q 047598 669 IKGANLLREMPL----GMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 669 L~~~~~l~~lp~----~i~~l~~L~~L~~~~~~ 697 (1112)
+-+|.. ...+. .+.++++|++|+...+.
T Consensus 120 ll~Npv-~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPV-EHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCch-hcccCceeEEEEecCcceEeehhhhh
Confidence 888873 32222 15677788888766554
No 180
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.03 E-value=0.022 Score=70.00 Aligned_cols=166 Identities=17% Similarity=0.242 Sum_probs=88.0
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
+...+|.++.+++|+.++...... +.....++.++|++|+||||+|+.++.... ..|. -++++...+..+
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~--~~~~g~~i~l~GppG~GKTtl~~~ia~~l~-----~~~~---~i~~~~~~d~~~ 390 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRV--NKIKGPILCLVGPPGVGKTSLGQSIAKATG-----RKYV---RMALGGVRDEAE 390 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhc--ccCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEE---EEEcCCCCCHHH
Confidence 456899999999999888631110 112345899999999999999999987543 2231 233444333322
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhh----HHHHHhcccCC--------------C-
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSL----WVDLKAPLLAA--------------A- 317 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~--------------~- 317 (1112)
+...-....+ .......+.+... ....-+++||.++...... ...+...+.+. .
T Consensus 391 i~g~~~~~~g------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 391 IRGHRRTYIG------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hccchhccCC------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccC
Confidence 2111000000 1112223333332 2234478899996433211 12333322211 1
Q ss_pred CCcEEEEEcCChhhhhh-cCCCceeeCCCCChHhHHHHHHHhH
Q 047598 318 PNSKMIITTRHSHVAST-MGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 318 ~gs~iivTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
.+.-+|.|+....+... .+-...+.+.+++.+|-.++..++.
T Consensus 464 s~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 464 SDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 23334444443332211 1233578899999998888877765
No 181
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.01 E-value=0.0012 Score=67.62 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=28.2
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEe
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCI 248 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~ 248 (1112)
.++|+|..|+||||++..+..... ..|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~-----~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR-----HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc-----ccCCEEEEEec
Confidence 567999999999999999987754 56877776654
No 182
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.00 E-value=0.0074 Score=75.34 Aligned_cols=159 Identities=13% Similarity=0.088 Sum_probs=83.7
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCcee-EEEEeCCCCCHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIK-AWVCISDVFDVL 255 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~-~wv~~~~~~~~~ 255 (1112)
..++||+.++.++++.|.. ....-+.++|.+|+|||++|+.+........ ...-.... +++.++...
T Consensus 178 ~~vigr~~ei~~~i~iL~r--------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~--- 246 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV--- 246 (857)
T ss_pred CcCCCCHHHHHHHHHHHhc--------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh---
Confidence 3589999999999999965 1233466999999999999999888652110 00001222 222222110
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHh--CCCcEEEEEeCCCCCC-------hhhHHHHHhcccCCCCCcEEEEEc
Q 047598 256 SISKALLESITRKPCHLNTLNEVQVDLKTAV--DGKRFLLVLDDVWNED-------YSLWVDLKAPLLAAAPNSKMIITT 326 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~iivTT 326 (1112)
. ... ...+.++....+...+ .+++.+|++|++.... ..+-..+..+.... ..-++|-+|
T Consensus 247 -------a---g~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaT 314 (857)
T PRK10865 247 -------A---GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGAT 314 (857)
T ss_pred -------h---ccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcC
Confidence 0 000 0111222222222221 2568999999985321 01122333333222 234566666
Q ss_pred CChhhhhh-------cCCCceeeCCCCChHhHHHHHHHhH
Q 047598 327 RHSHVAST-------MGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 327 R~~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
...+.... ..-...+.+...+.++..+++....
T Consensus 315 t~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 55443111 1122356677778888888886543
No 183
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.98 E-value=0.017 Score=68.03 Aligned_cols=180 Identities=16% Similarity=0.113 Sum_probs=93.8
Q ss_pred CcceecchhhHHHHHHHHhcCCCC----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEK----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
-..++|.+..++++.+++...... ..+....+=+.++|++|+|||++|+.+++..... | +.++.
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-----~-----~~i~~-- 121 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-----F-----FSISG-- 121 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-----e-----eeccH--
Confidence 346888887777666544310000 0011223447899999999999999999865322 2 22221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhhHHHHHh----cccC--C
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED----------YSLWVDLKA----PLLA--A 316 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l~~----~l~~--~ 316 (1112)
.++... ... .....+...+.......+.+|++|+++... ...+..... .+.. .
T Consensus 122 --~~~~~~----~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 --SDFVEM----FVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred --HHHHHH----Hhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 111111 100 111222333344445567899999995421 112222222 1211 2
Q ss_pred CCCcEEEEEcCChhhhh-----hcCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCC
Q 047598 317 APNSKMIITTRHSHVAS-----TMGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGG 384 (1112)
Q Consensus 317 ~~gs~iivTTR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 384 (1112)
..+-.||.||....... ...-...+.+...+.++-.++|..+...... ..... ...+++.+.|
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G 258 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPG 258 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCC
Confidence 23445666776554222 1123357888888888888888877643221 11122 3467777776
No 184
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.96 E-value=0.012 Score=72.71 Aligned_cols=122 Identities=16% Similarity=0.209 Sum_probs=70.4
Q ss_pred cceecchhhHHHHHHHHhcCCCCC-CCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKT-DDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++|.+..++.+...+....... .......++.++|+.|+|||+||+.++.... ...+.+.+++..+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~--------~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG--------VHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc--------CCeEEEeCchhhhccc
Confidence 458899999999888876411100 0123456789999999999999999987542 2234445444222111
Q ss_pred HHHHHHHHhcCCCC--CCCChHHHHHHHHHHhCC-CcEEEEEeCCCCCChhhHHHHHhcccC
Q 047598 257 ISKALLESITRKPC--HLNTLNEVQVDLKTAVDG-KRFLLVLDDVWNEDYSLWVDLKAPLLA 315 (1112)
Q Consensus 257 ~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~l~~~l~~ 315 (1112)
+...++.... ....... +.+.++. ..-+++||+++..+.+.+..+...+..
T Consensus 526 ----~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 ----VSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred ----HHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111222111 1111122 2233333 345999999998877777777766543
No 185
>PRK10536 hypothetical protein; Provisional
Probab=96.95 E-value=0.016 Score=59.69 Aligned_cols=137 Identities=16% Similarity=0.186 Sum_probs=75.0
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEE----eCC---
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVC----ISD--- 250 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~----~~~--- 250 (1112)
..+.++......++.++.. ..+|.+.|.+|.|||+||.++..+.-.. +.|..++-.. +++
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----------~~lV~i~G~aGTGKT~La~a~a~~~l~~---~~~~kIiI~RP~v~~ge~LG 121 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----------KQLIFATGEAGCGKTWISAAKAAEALIH---KDVDRIIVTRPVLQADEDLG 121 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----------CCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeeEEEEeCCCCCchhhhC
Confidence 3466788888888888854 2399999999999999999887753212 3344333221 111
Q ss_pred --CCCHH----HHHHHHHHHhcCCCCCCCChHHHHH----H----HHHHhCCCcE---EEEEeCCCCCChhhHHHHHhcc
Q 047598 251 --VFDVL----SISKALLESITRKPCHLNTLNEVQV----D----LKTAVDGKRF---LLVLDDVWNEDYSLWVDLKAPL 313 (1112)
Q Consensus 251 --~~~~~----~~~~~il~~l~~~~~~~~~~~~~~~----~----l~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l 313 (1112)
+-+.. -.++.+...+..-. .....+.... . =..+++++.+ +||+|.+.+.+..+...+.
T Consensus 122 fLPG~~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l--- 197 (262)
T PRK10536 122 FLPGDIAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL--- 197 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---
Confidence 01111 12222222221100 0011111100 0 0235567655 9999999877654444443
Q ss_pred cCCCCCcEEEEEcCChhh
Q 047598 314 LAAAPNSKMIITTRHSHV 331 (1112)
Q Consensus 314 ~~~~~gs~iivTTR~~~v 331 (1112)
...+.+|++|+|--..++
T Consensus 198 tR~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 198 TRLGENVTVIVNGDITQC 215 (262)
T ss_pred hhcCCCCEEEEeCChhhc
Confidence 445689999998765443
No 186
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.95 E-value=0.00026 Score=84.99 Aligned_cols=113 Identities=22% Similarity=0.196 Sum_probs=80.7
Q ss_pred cccccccCCcccEEEeccccc--ccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccC--cccc
Q 047598 584 LSDLLPKFKRLRVLSLQRYYI--GELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLP--SKMR 659 (1112)
Q Consensus 584 ~~~~~~~~~~L~~L~L~~~~~--~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~ 659 (1112)
+...-..+|+|+.|.+++-.+ .+.-.-..++++|+.||+|+++++.+ ..+++|+|||+|.+++= .+..-+ ..+.
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNL-EFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCC-CCCchhhHHHHh
Confidence 334445678899999987655 22334457889999999999999998 78999999999999873 443322 2578
Q ss_pred CCccccEEeecCCCccccC--C----CCCCCCCCCCccCeeeecc
Q 047598 660 NLINLHHLDIKGANLLREM--P----LGMKELKNLRTLSNFIVGK 698 (1112)
Q Consensus 660 ~L~~L~~L~L~~~~~l~~l--p----~~i~~l~~L~~L~~~~~~~ 698 (1112)
.|++|++||+|........ . +.-..|++|+.|+.+++..
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 8999999999986532211 1 1123477888888876653
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0026 Score=75.45 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=77.1
Q ss_pred cceecchhhHHHHHHHHhcCCCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++|.+..+..+.+.+...... .+...+..+...+|+.|+|||-||+++....- +.=+..+-+ |+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf-----g~e~aliR~------DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF-----GDEQALIRI------DMSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc-----CCCccceee------chHH
Confidence 46899999999999888652211 11345677888999999999999999887431 000233333 3333
Q ss_pred HHHHH--HHHhcCCCCCCCChHHHHHHHHHHhCCCcE-EEEEeCCCCCChhhHHHHHhcccCC
Q 047598 257 ISKAL--LESITRKPCHLNTLNEVQVDLKTAVDGKRF-LLVLDDVWNEDYSLWVDLKAPLLAA 316 (1112)
Q Consensus 257 ~~~~i--l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (1112)
....- -+-+|.++ .--..++ .-.|-+.++.++| +|.||.+...+.+..+-+.+.+.++
T Consensus 560 y~EkHsVSrLIGaPP-GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 560 YMEKHSVSRLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHHHhCCCC-CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 33322 22233322 1111111 2234455667777 8889999988887887777776543
No 188
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.90 E-value=0.051 Score=67.67 Aligned_cols=54 Identities=28% Similarity=0.434 Sum_probs=39.7
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
+..++|.+..+++|.+++...... +.....++.++|++|+|||++|+.+.+...
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~--~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLR--GKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhh--cCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345889999999998876421100 122335899999999999999999998753
No 189
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.90 E-value=0.016 Score=65.69 Aligned_cols=119 Identities=20% Similarity=0.152 Sum_probs=76.5
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDG 288 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1112)
++.|.|+-++||||+++.+..... .. .+++...+......-+.+. ...+...-..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~-----~~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~ 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL-----EE---IIYINFDDLRLDRIELLDL-----------------LRAYIELKER 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC-----cc---eEEEEecchhcchhhHHHH-----------------HHHHHHhhcc
Confidence 999999999999999977766532 11 4445443332111111111 1111111112
Q ss_pred CcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhhhhh------cCCCceeeCCCCChHhHHHHH
Q 047598 289 KRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHVAST------MGPIKHYNLKRLLDEDCWSIF 355 (1112)
Q Consensus 289 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~------~~~~~~~~l~~L~~~~~~~Lf 355 (1112)
++..|+||.|... ..|......+.+.++. +|++|+-+..+... .|-...+.+.||+-.|...+-
T Consensus 94 ~~~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 94 EKSYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CCceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 7889999999655 6899988888887666 89998887654322 233467899999988876643
No 190
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.86 E-value=0.029 Score=64.70 Aligned_cols=205 Identities=17% Similarity=0.149 Sum_probs=119.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccC---CCCceeEEEEeCCCCCHH
Q 047598 179 AVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKD---FKFDIKAWVCISDVFDVL 255 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~---~~F~~~~wv~~~~~~~~~ 255 (1112)
.+-+|+.+..+|-..+...=. .......+.|.|-+|.|||+.+..|.+........ ..|+ .+.|..-.-....
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~---~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFIS---DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred cccchhHHHHHHHHHHHhhcC---CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 456899999998887754111 11334589999999999999999998865421111 3343 2344444556789
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-----CCCcEEEEEeCCC---CCChhhHHHHHhcccC-CCCCcEEEEEc
Q 047598 256 SISKALLESITRKPCHLNTLNEVQVDLKTAV-----DGKRFLLVLDDVW---NEDYSLWVDLKAPLLA-AAPNSKMIITT 326 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~---~~~~~~~~~l~~~l~~-~~~gs~iivTT 326 (1112)
+++..|++++.+... ......+.+..+. +.+.+++++|+++ +..++. +...|.| ..++||++|.+
T Consensus 473 ~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdV---lYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 473 EIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDV---LYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHH---HHHHhcCCcCCCCceEEEE
Confidence 999999999987642 2223333444443 2456888888874 222221 2233333 45788877654
Q ss_pred CCh--h---------hhhhcCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhh
Q 047598 327 RHS--H---------VASTMGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGL 395 (1112)
Q Consensus 327 R~~--~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 395 (1112)
=.. + +...+ ....+...|-+.++-.++...+..+... -.....+-+|++|+.--|..-.|+.+.-++
T Consensus 547 IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 211 1 11111 2245667777777777777666544322 233444555666666556555555544433
No 191
>PRK08181 transposase; Validated
Probab=96.82 E-value=0.0034 Score=66.30 Aligned_cols=100 Identities=19% Similarity=0.089 Sum_probs=53.8
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDG 288 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1112)
-+.++|.+|+|||.||..+.+.... ....++|+++ .++...+..... .......... +.
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~-----~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~----l~- 166 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIE-----NGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAK----LD- 166 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHH-----cCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHH----Hh-
Confidence 4899999999999999999875431 1223455543 344444433211 1122222222 22
Q ss_pred CcEEEEEeCCCCCChhhHH-H-HHhcccCCCCCcEEEEEcCCh
Q 047598 289 KRFLLVLDDVWNEDYSLWV-D-LKAPLLAAAPNSKMIITTRHS 329 (1112)
Q Consensus 289 kr~LlVlDdv~~~~~~~~~-~-l~~~l~~~~~gs~iivTTR~~ 329 (1112)
+-=||||||+.......|. . +...+.....+..+||||...
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 3459999999654333332 2 222222211123688998753
No 192
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.041 Score=59.76 Aligned_cols=96 Identities=11% Similarity=0.142 Sum_probs=63.9
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCCh-hhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCC
Q 047598 288 GKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHS-HVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSL 365 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 365 (1112)
+++=++|+|+++......-..+...+-.-..++.+|++|... .+...+ +-...+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 566789999998766556666666665555677777777654 343332 234678999999999988876531
Q ss_pred CCchhHHHHHHHHHhhcCCchHHHHHHh
Q 047598 366 KAHQISELFRKKVVGKCGGLPLAAKSLG 393 (1112)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1112)
.+ +..+..++..++|.|+....+.
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1125677899999998665443
No 193
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.79 E-value=0.016 Score=72.38 Aligned_cols=140 Identities=19% Similarity=0.201 Sum_probs=75.3
Q ss_pred cceecchhhHHHHHHHHhcCCCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++|.+..++.+...+...... ...+....++.++|+.|+|||++|+.+++...- .-...+.+.++.-... .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~-----~~~~~i~id~se~~~~-~ 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD-----SDDAMVRIDMSEFMEK-H 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc-----CCCcEEEEEhHHhhhh-h
Confidence 46889999999988887641110 001223457889999999999999999865321 1112233444322111 0
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC-CcEEEEEeCCCCCChhhHHHHHhcccCC----C-------CCcEEEE
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDG-KRFLLVLDDVWNEDYSLWVDLKAPLLAA----A-------PNSKMII 324 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iiv 324 (1112)
....-++... .....++ ...+...++. ..-+|+||++...+...+..+...+..+ + ..+-||+
T Consensus 642 ---~~~~LiG~~p-gy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~ 716 (857)
T PRK10865 642 ---SVSRLVGAPP-GYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM 716 (857)
T ss_pred ---hHHHHhCCCC-cccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEE
Confidence 1111122221 1111111 1112222322 2359999999877777777776655432 1 2233777
Q ss_pred EcCC
Q 047598 325 TTRH 328 (1112)
Q Consensus 325 TTR~ 328 (1112)
||..
T Consensus 717 TSN~ 720 (857)
T PRK10865 717 TSNL 720 (857)
T ss_pred eCCc
Confidence 8765
No 194
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.03 Score=61.88 Aligned_cols=151 Identities=11% Similarity=0.044 Sum_probs=88.7
Q ss_pred eec-chhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc--c---------------CCCCc
Q 047598 180 VYG-RDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA--K---------------DFKFD 241 (1112)
Q Consensus 180 ~vG-r~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~---------------~~~F~ 241 (1112)
++| .+..++.+.+.+.. +.-....-++|+.|+||||+|+.+.+..--.. . +.|.|
T Consensus 7 i~~~q~~~~~~L~~~~~~-------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD 79 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAK-------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPD 79 (329)
T ss_pred HHhhHHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCC
Confidence 455 66677777777754 22346778999999999999988865432110 0 00111
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHHHHhcccCCC
Q 047598 242 IKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA----VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAA 317 (1112)
Q Consensus 242 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 317 (1112)
... +.... .....++....+... ..+++=++|+|++..........+...+....
T Consensus 80 ~~~-i~~~~--------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp 138 (329)
T PRK08058 80 VHL-VAPDG--------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS 138 (329)
T ss_pred EEE-ecccc--------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC
Confidence 111 11100 011222222222111 23455679999997776666677777776655
Q ss_pred CCcEEEEEcCCh-hhhhhc-CCCceeeCCCCChHhHHHHHHHh
Q 047598 318 PNSKMIITTRHS-HVASTM-GPIKHYNLKRLLDEDCWSIFIKH 358 (1112)
Q Consensus 318 ~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 358 (1112)
.++.+|++|.+. .+.... +....+++.+++.++..+.+...
T Consensus 139 ~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 139 GGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 677777777654 333322 23467899999999998877653
No 195
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.73 E-value=0.049 Score=58.15 Aligned_cols=22 Identities=45% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 047598 209 VIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
-|.+.|.+|+|||++|+.+.+.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999863
No 196
>PRK07261 topology modulation protein; Provisional
Probab=96.70 E-value=0.0039 Score=61.61 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=40.6
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDG 288 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1112)
.|.|+|++|+||||||+++....... .-+.|...|-.-. ...+.++....+...+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~--~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCP--VLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC--eEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhC
Confidence 48899999999999999998764322 1234444452110 112234455556666666
Q ss_pred CcEEEEEeCCC
Q 047598 289 KRFLLVLDDVW 299 (1112)
Q Consensus 289 kr~LlVlDdv~ 299 (1112)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 66 5778774
No 197
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.11 Score=56.53 Aligned_cols=179 Identities=10% Similarity=0.032 Sum_probs=99.0
Q ss_pred HHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----cCCCCceeEEEEeCCCCCHHHHHHHH
Q 047598 187 KARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-----KDFKFDIKAWVCISDVFDVLSISKAL 261 (1112)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~~~~F~~~~wv~~~~~~~~~~~~~~i 261 (1112)
-..+...+.. +.-..-.-+.|+.|+||+++|+.+.+-.--.. ..+.-...-++..+..+|+..+
T Consensus 11 ~~~l~~~~~~-------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (325)
T PRK06871 11 YQQITQAFQQ-------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL---- 79 (325)
T ss_pred HHHHHHHHHc-------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE----
Confidence 4455555543 12245777999999999999988766432110 0000000001111122221110
Q ss_pred HHHhcCCCCCCCChHHHH---HHHHHH-hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCCh-hhhhhc-
Q 047598 262 LESITRKPCHLNTLNEVQ---VDLKTA-VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHS-HVASTM- 335 (1112)
Q Consensus 262 l~~l~~~~~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~- 335 (1112)
.......-.+++.. ..+... ..+++=++|+|+++.........+...+-...+++.+|++|.+. .+....
T Consensus 80 ----~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 80 ----EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ----ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 00000111233322 222211 23566688899998877777777877776666677777777654 444332
Q ss_pred CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHH
Q 047598 336 GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAA 389 (1112)
Q Consensus 336 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1112)
+-...+.+.+++.++..+.+...... ... .+...+..++|.|..+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~-----~~~----~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSA-----EIS----EILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhcc-----ChH----HHHHHHHHcCCCHHHH
Confidence 23468999999999998888765311 111 2455678899999633
No 198
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.014 Score=67.06 Aligned_cols=107 Identities=22% Similarity=0.319 Sum_probs=66.9
Q ss_pred CCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHH
Q 047598 176 TERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVL 255 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 255 (1112)
.+..-+|.++.+++|++.+.-..-. +..+-++++.+|++|+|||.+|+.++.-.-.+ | +-++++.-.|..
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLr--gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk-----F---fRfSvGG~tDvA 478 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLR--GSVQGKILCFVGPPGVGKTSIAKSIARALNRK-----F---FRFSVGGMTDVA 478 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhc--ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc-----e---EEEeccccccHH
Confidence 3567889999999999998642111 34556899999999999999999998865422 3 234566666655
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCC
Q 047598 256 SISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVW 299 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 299 (1112)
+|-.- .+. .-..-....++.+++. +...=|+.+|.|+
T Consensus 479 eIkGH-----RRT-YVGAMPGkiIq~LK~v-~t~NPliLiDEvD 515 (906)
T KOG2004|consen 479 EIKGH-----RRT-YVGAMPGKIIQCLKKV-KTENPLILIDEVD 515 (906)
T ss_pred hhccc-----cee-eeccCChHHHHHHHhh-CCCCceEEeehhh
Confidence 43110 000 0111223334444433 3345688899985
No 199
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.63 E-value=0.12 Score=56.15 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCCh-hhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCC
Q 047598 288 GKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHS-HVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSL 365 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 365 (1112)
+++=++|+|+++.........+...+-...+++.+|++|.+. .+.... +-...+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 445688999998877777778877776655677777666654 444332 344688999999999988886531 1
Q ss_pred CCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 366 KAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
+ .+..++..++|.|+....+
T Consensus 182 -~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 -T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -c------hHHHHHHHcCCCHHHHHHH
Confidence 1 1346788999999876544
No 200
>PRK12377 putative replication protein; Provisional
Probab=96.62 E-value=0.0036 Score=65.21 Aligned_cols=101 Identities=20% Similarity=0.098 Sum_probs=56.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
..+.|+|.+|+|||+||.++++..... ...++++++. ++...+-..... ..... .+.+.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~-----g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l- 161 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK-----GRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQEL- 161 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-----CCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHh-
Confidence 578999999999999999999876422 2335666553 334443333211 11111 222222
Q ss_pred CCcEEEEEeCCCCCChhhHHH--HHhcccCC-CCCcEEEEEcCC
Q 047598 288 GKRFLLVLDDVWNEDYSLWVD--LKAPLLAA-APNSKMIITTRH 328 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTTR~ 328 (1112)
.+--||||||+.......|.. +...+... ...--+||||..
T Consensus 162 ~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 162 CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 346699999995544445543 22222221 122347888864
No 201
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.62 E-value=0.0085 Score=74.54 Aligned_cols=139 Identities=15% Similarity=0.121 Sum_probs=76.5
Q ss_pred cceecchhhHHHHHHHHhcCCCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++|.+..++.+.+.+...... ........++.++|+.|+|||.+|+.+..... +.....+-+.++.....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~-----~~~~~~~~~dmse~~~~-- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY-----GGEQNLITINMSEFQEA-- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh-----CCCcceEEEeHHHhhhh--
Confidence 46899999999999888541110 01234566899999999999999998876531 11111222222221111
Q ss_pred HHHHHHHHhcCCCC--CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCC-----------CCcEEE
Q 047598 257 ISKALLESITRKPC--HLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAA-----------PNSKMI 323 (1112)
Q Consensus 257 ~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ii 323 (1112)
..+..-++.... .......+...+++ ...-+|+||++...+...++.+...+..+. ..+-||
T Consensus 639 --~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI 713 (852)
T TIGR03345 639 --HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVIL 713 (852)
T ss_pred --hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEE
Confidence 011111222111 11111222333332 455699999998877777777766654432 345566
Q ss_pred EEcCC
Q 047598 324 ITTRH 328 (1112)
Q Consensus 324 vTTR~ 328 (1112)
+||..
T Consensus 714 ~TSNl 718 (852)
T TIGR03345 714 LTSNA 718 (852)
T ss_pred EeCCC
Confidence 67653
No 202
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.58 E-value=0.016 Score=72.81 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=77.5
Q ss_pred cceecchhhHHHHHHHHhcCCCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++|.+..++.+...+...... ........++.++|+.|+|||++|+.+..... ..-...+.+.++.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~-----~~~~~~i~~d~s~~~~~~~ 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF-----DDEDAMVRIDMSEYMEKHS 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc-----CCCCcEEEEechhhcccch
Confidence 45899999999999988652110 00123356788999999999999999987532 1112223344443222111
Q ss_pred HHHHHHHHhcCCCC--CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCC-----------CCcEEE
Q 047598 257 ISKALLESITRKPC--HLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAA-----------PNSKMI 323 (1112)
Q Consensus 257 ~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ii 323 (1112)
+ ..-++.... .......+...++. ....+|+||++...+...+..+...+..+. ..+-||
T Consensus 640 ~----~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI 712 (852)
T TIGR03346 640 V----ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII 712 (852)
T ss_pred H----HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE
Confidence 1 111222111 11111222222221 233589999999888888887777664331 234477
Q ss_pred EEcCC
Q 047598 324 ITTRH 328 (1112)
Q Consensus 324 vTTR~ 328 (1112)
+||..
T Consensus 713 ~TSn~ 717 (852)
T TIGR03346 713 MTSNL 717 (852)
T ss_pred EeCCc
Confidence 77764
No 203
>PRK09183 transposase/IS protein; Provisional
Probab=96.55 E-value=0.0078 Score=63.81 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+.|+|.+|+|||+||..+....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 467799999999999999997653
No 204
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.54 E-value=0.011 Score=61.45 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=57.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
...+.++|.+|+|||+||.++++..... -..++++++ .++...+-..... .....+ .+.+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~-----g~~v~~it~------~~l~~~l~~~~~~---~~~~~~----~~l~~l 160 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR-----GKSVLIITV------ADIMSAMKDTFSN---SETSEE----QLLNDL 160 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEH------HHHHHHHHHHHhh---ccccHH----HHHHHh
Confidence 3478999999999999999999876422 234455543 3444443333221 111112 233334
Q ss_pred CCCcEEEEEeCCCCCChhhHHH-HHhcccCC--CCCcEEEEEcCC
Q 047598 287 DGKRFLLVLDDVWNEDYSLWVD-LKAPLLAA--APNSKMIITTRH 328 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~~~~~-l~~~l~~~--~~gs~iivTTR~ 328 (1112)
. +.=+||+||+.......|.. +...+.+. ...-.+||||..
T Consensus 161 ~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 161 S-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred c-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4 34488889997665566664 22222211 123457888864
No 205
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.53 E-value=0.02 Score=62.55 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=63.6
Q ss_pred hHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCce-eEEEEeCCC-CCHHHHHHHHHH
Q 047598 186 DKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDI-KAWVCISDV-FDVLSISKALLE 263 (1112)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~-~~wv~~~~~-~~~~~~~~~il~ 263 (1112)
-..++++.+... +.-.-+.|+|.+|+|||||++.+.+..... +-+. ++|+.+.+. ..+.++.+.+..
T Consensus 119 ~~~RvID~l~Pi-------GkGQR~LIvG~pGtGKTTLl~~la~~i~~~----~~dv~~vv~lIgER~~EV~df~~~i~~ 187 (380)
T PRK12608 119 LSMRVVDLVAPI-------GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN----HPEVHLMVLLIDERPEEVTDMRRSVKG 187 (380)
T ss_pred hhHhhhhheeec-------CCCceEEEECCCCCCHHHHHHHHHHHHHhc----CCCceEEEEEecCCCCCHHHHHHHHhh
Confidence 345577777641 122356899999999999999988865322 2233 467777765 466788888877
Q ss_pred HhcCCCCCCCChHH-----HHHHHHHHh--CCCcEEEEEeCC
Q 047598 264 SITRKPCHLNTLNE-----VQVDLKTAV--DGKRFLLVLDDV 298 (1112)
Q Consensus 264 ~l~~~~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 298 (1112)
.+.....+...... ....+.+++ ++++.+||+|++
T Consensus 188 ~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 188 EVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred hEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 66654322222111 111122222 589999999999
No 206
>PRK06526 transposase; Provisional
Probab=96.52 E-value=0.0048 Score=64.93 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.-+.|+|++|+|||+||..+....
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH
Confidence 358999999999999999988764
No 207
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.022 Score=63.05 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=84.9
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 047598 204 DANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLK 283 (1112)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 283 (1112)
..+..-+.+.|++|+|||+||.+++... .|..+=-++...-..+. .............
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S-------~FPFvKiiSpe~miG~s---------------EsaKc~~i~k~F~ 592 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSS-------DFPFVKIISPEDMIGLS---------------ESAKCAHIKKIFE 592 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhc-------CCCeEEEeChHHccCcc---------------HHHHHHHHHHHHH
Confidence 3456778899999999999999998763 45433222211111100 0111122223334
Q ss_pred HHhCCCcEEEEEeCCCCCChhhHHHHH------------hcc---cCCCCCcEEEEEcCChhhhhhcCC----CceeeCC
Q 047598 284 TAVDGKRFLLVLDDVWNEDYSLWVDLK------------APL---LAAAPNSKMIITTRHSHVASTMGP----IKHYNLK 344 (1112)
Q Consensus 284 ~~l~~kr~LlVlDdv~~~~~~~~~~l~------------~~l---~~~~~gs~iivTTR~~~v~~~~~~----~~~~~l~ 344 (1112)
..-+..--.||+||+.. ..+|..++ ..+ |+.++.--|+-||....+.+.|+. ...|.+.
T Consensus 593 DAYkS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HhhcCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 44566677999999953 23333222 122 233333345567777888888763 3578888
Q ss_pred CCCh-HhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhc
Q 047598 345 RLLD-EDCWSIFIKHAYESRSLKAHQISELFRKKVVGKC 382 (1112)
Q Consensus 345 ~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c 382 (1112)
.++. ++..+.++..-. -.+...+.++++...+|
T Consensus 671 nl~~~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 8887 777777765431 12233344566666666
No 208
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.49 E-value=0.0029 Score=61.06 Aligned_cols=101 Identities=22% Similarity=0.245 Sum_probs=67.6
Q ss_pred ccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccC-CccccEEeecCC
Q 047598 594 LRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRN-LINLHHLDIKGA 672 (1112)
Q Consensus 594 L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~-L~~L~~L~L~~~ 672 (1112)
=+.++|.+.++..+-.-=.-+.+...+||++|.+..++ .|..+.+|.+|.|.+| .+..+...+.. +++|..|.|.+|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecCc
Confidence 34455655554333210011235678999999998774 4778999999999998 77777666665 678999999998
Q ss_pred CccccCCC--CCCCCCCCCccCeeeec
Q 047598 673 NLLREMPL--GMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 673 ~~l~~lp~--~i~~l~~L~~L~~~~~~ 697 (1112)
+ +..+-. .+..+++|++|.+.+|.
T Consensus 99 s-i~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 99 S-IQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred c-hhhhhhcchhccCCccceeeecCCc
Confidence 8 444322 25566677777665554
No 209
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.47 E-value=0.86 Score=50.63 Aligned_cols=273 Identities=13% Similarity=0.146 Sum_probs=150.2
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHH-HHHhccccccccCCCCceeEEEEeCCC---CCHHHHH
Q 047598 183 RDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLA-REVYNDKSLNAKDFKFDIKAWVCISDV---FDVLSIS 258 (1112)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~ 258 (1112)
|.+..++|..||.. ..-..|.|.|+-|+||+.|+ .++.++.+ .++.+.+.+- .+-..+.
T Consensus 1 R~e~~~~L~~wL~e--------~~~TFIvV~GPrGSGK~elV~d~~L~~r~---------~vL~IDC~~i~~ar~D~~~I 63 (431)
T PF10443_consen 1 RKEAIEQLKSWLNE--------NPNTFIVVQGPRGSGKRELVMDHVLKDRK---------NVLVIDCDQIVKARGDAAFI 63 (431)
T ss_pred CchHHHHHHHHHhc--------CCCeEEEEECCCCCCccHHHHHHHHhCCC---------CEEEEEChHhhhccChHHHH
Confidence 56778999999976 33469999999999999999 77766532 1444444321 2233444
Q ss_pred HHHHHHhcCC-----------------------CCC-CCChH-HHHHH-------HHH-------------------Hh-
Q 047598 259 KALLESITRK-----------------------PCH-LNTLN-EVQVD-------LKT-------------------AV- 286 (1112)
Q Consensus 259 ~~il~~l~~~-----------------------~~~-~~~~~-~~~~~-------l~~-------------------~l- 286 (1112)
+.++.++|-- ... ..+.+ ++... |++ +|
T Consensus 64 ~~lA~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~ 143 (431)
T PF10443_consen 64 KNLASQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLE 143 (431)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhh
Confidence 4444444321 111 11111 22111 111 01
Q ss_pred --CCCcEEEEEeCCCCCC---------hhhHHHHHhcccCCCCCcEEEEEcCChhhhhhcC------CCceeeCCCCChH
Q 047598 287 --DGKRFLLVLDDVWNED---------YSLWVDLKAPLLAAAPNSKMIITTRHSHVASTMG------PIKHYNLKRLLDE 349 (1112)
Q Consensus 287 --~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~------~~~~~~l~~L~~~ 349 (1112)
..+|=+||+||.-... ..+|... +.. .+=..||++|-+........ ..+.+.|...+.+
T Consensus 144 ~hPe~~PVVVIdnF~~k~~~~~~iy~~laeWAa~---Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~ 219 (431)
T PF10443_consen 144 AHPERRPVVVIDNFLHKAEENDFIYDKLAEWAAS---LVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPE 219 (431)
T ss_pred hCCccCCEEEEcchhccCcccchHHHHHHHHHHH---HHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHH
Confidence 1235689999985432 1234332 211 23457899888765554332 3467889999999
Q ss_pred hHHHHHHHhHhCCCCC------------CCc----hhHHHHHHHHHhhcCCchHHHHHHhhhhcCC-C-HHHHHHHHhcc
Q 047598 350 DCWSIFIKHAYESRSL------------KAH----QISELFRKKVVGKCGGLPLAAKSLGGLLRTT-R-CDLWEDILDSK 411 (1112)
Q Consensus 350 ~~~~Lf~~~~~~~~~~------------~~~----~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~-~~~w~~~l~~~ 411 (1112)
.|.++...+....... .+. .....-....++..||==.-+..+++.++.. + .+...++.++.
T Consensus 220 ~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~qs 299 (431)
T PF10443_consen 220 SAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQS 299 (431)
T ss_pred HHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999998887543111 000 1122233567888999999999999998877 4 34555555532
Q ss_pred ccCCCCCCCchHHHHHHhc-------CCchHHHHHHhHhhcCCCCceechHHHHHHHHhCCcccccCCCchHHHHHHHHH
Q 047598 412 IWDLPQQSGILPVLRLSYH-------HLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGSQCF 484 (1112)
Q Consensus 412 ~~~~~~~~~i~~~l~~sy~-------~L~~~~k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~ 484 (1112)
. ..+.++-+. ..+-.-.+.+..+-..-+...++...++..- .+ .+ .++..+
T Consensus 300 a---------~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~~~----lF---k~------~~E~~L 357 (431)
T PF10443_consen 300 A---------SEIRKMFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNELLLSP----LF---KG------NDETAL 357 (431)
T ss_pred H---------HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHHHccc----cc---CC------CChHHH
Confidence 1 122222221 1122223333333344555566665554311 11 11 123358
Q ss_pred HHHhhCCccccccC
Q 047598 485 HDLVSRSIFQPSSR 498 (1112)
Q Consensus 485 ~~L~~~~l~~~~~~ 498 (1112)
..|.+..||.....
T Consensus 358 ~aLe~aeLItv~~~ 371 (431)
T PF10443_consen 358 RALEQAELITVTTD 371 (431)
T ss_pred HHHHHCCcEEEEec
Confidence 88999999876554
No 210
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.017 Score=59.97 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=52.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1112)
.-|+|-++|++|.|||+|++++++...++..+.+...+ -+.++. ..++.+.... ...-.....++|.+.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~-liEins----hsLFSKWFsE------SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ-LIEINS----HSLFSKWFSE------SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce-EEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHH
Confidence 35899999999999999999999999887654444332 333322 1222222221 123345556677777
Q ss_pred hCCCcE--EEEEeCCCC
Q 047598 286 VDGKRF--LLVLDDVWN 300 (1112)
Q Consensus 286 l~~kr~--LlVlDdv~~ 300 (1112)
+.++.. ++.+|.|.+
T Consensus 245 v~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVES 261 (423)
T ss_pred HhCCCcEEEEEeHHHHH
Confidence 776654 445799864
No 211
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.15 Score=54.34 Aligned_cols=191 Identities=15% Similarity=0.115 Sum_probs=105.8
Q ss_pred cceecchhhHHHHHHHHhcCCCC-----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+=|-++++++|.+...-+=.. .-+-...+=|-++|++|.|||-||++|+++... .|- .+..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-----tFI-----rvvgS- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-----TFI-----RVVGS- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-----eEE-----EeccH-
Confidence 35668899999988876431000 012234566789999999999999999998653 342 22211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCCC--------------hhhHHHHHhcccCCC
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAV-DGKRFLLVLDDVWNED--------------YSLWVDLKAPLLAAA 317 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~~~ 317 (1112)
++.++.+ +. -..+...+.+.- ...+..|++|.++... +...-++...+..+.
T Consensus 220 ---ElVqKYi----GE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 ---ELVQKYI----GE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred ---HHHHHHh----cc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 1222111 11 012233333333 3568999999986311 122233444554443
Q ss_pred --CCcEEEEEcCChhhhhhc-----CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch----
Q 047598 318 --PNSKMIITTRHSHVASTM-----GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP---- 386 (1112)
Q Consensus 318 --~gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP---- 386 (1112)
..-|||..|...++.... .-...+++..-+.+.-.++|.-++-.-.- .++-.+ +.+++.|.|.-
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-~~dvd~----e~la~~~~g~sGAdl 361 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-ADDVDL----ELLARLTEGFSGADL 361 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-ccCcCH----HHHHHhcCCCchHHH
Confidence 345899999877665432 23456777755555556778776643332 333344 44555665543
Q ss_pred HHHHHHhhhhc
Q 047598 387 LAAKSLGGLLR 397 (1112)
Q Consensus 387 lai~~~~~~l~ 397 (1112)
-|+.+=|++++
T Consensus 362 kaictEAGm~A 372 (406)
T COG1222 362 KAICTEAGMFA 372 (406)
T ss_pred HHHHHHHhHHH
Confidence 34555555543
No 212
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.46 E-value=0.0075 Score=60.40 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=62.8
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC----CC-----C
Q 047598 183 RDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD----VF-----D 253 (1112)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~----~~-----~ 253 (1112)
+..+-...++.|.. ..++.+.|++|.|||.||.+..-+.-.. +.++.++++.-.- .. +
T Consensus 5 ~~~~Q~~~~~al~~----------~~~v~~~G~AGTGKT~LA~a~Al~~v~~---g~~~kiii~Rp~v~~~~~lGflpG~ 71 (205)
T PF02562_consen 5 KNEEQKFALDALLN----------NDLVIVNGPAGTGKTFLALAAALELVKE---GEYDKIIITRPPVEAGEDLGFLPGD 71 (205)
T ss_dssp -SHHHHHHHHHHHH-----------SEEEEE--TTSSTTHHHHHHHHHHHHT---TS-SEEEEEE-S--TT----SS---
T ss_pred CCHHHHHHHHHHHh----------CCeEEEECCCCCcHHHHHHHHHHHHHHh---CCCcEEEEEecCCCCccccccCCCC
Confidence 44445555666654 3499999999999999998777655333 6777777664211 10 0
Q ss_pred ----HHHHHHHHHHHhcCCCCCCCChHHHHHH------HHHHhCCC---cEEEEEeCCCCCChhhHHHHHhcccCCCCCc
Q 047598 254 ----VLSISKALLESITRKPCHLNTLNEVQVD------LKTAVDGK---RFLLVLDDVWNEDYSLWVDLKAPLLAAAPNS 320 (1112)
Q Consensus 254 ----~~~~~~~il~~l~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 320 (1112)
..-....+...+..-. .....+..... --.+++|+ ..+||+|++.+....++..+.. ..+.||
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~s 147 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGS 147 (205)
T ss_dssp ------TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCc
Confidence 0001111222221111 11222222211 01344554 4699999998877666666644 346799
Q ss_pred EEEEEcCChh
Q 047598 321 KMIITTRHSH 330 (1112)
Q Consensus 321 ~iivTTR~~~ 330 (1112)
|||++--..+
T Consensus 148 kii~~GD~~Q 157 (205)
T PF02562_consen 148 KIIITGDPSQ 157 (205)
T ss_dssp EEEEEE----
T ss_pred EEEEecCcee
Confidence 9999876543
No 213
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.45 E-value=0.0029 Score=68.58 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=43.0
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
..++|.++.++++++++...... .+...+++.++|++|+||||||+.+.+...
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g--~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQG--LEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhc--CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 37999999999999999763221 134568999999999999999999988764
No 214
>PRK06921 hypothetical protein; Provisional
Probab=96.44 E-value=0.014 Score=62.04 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=28.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEe
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCI 248 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~ 248 (1112)
...+.++|..|+|||+||.++++....+ . ...+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~---~-g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK---K-GVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh---c-CceEEEEEH
Confidence 4578999999999999999999875321 1 234566664
No 215
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.40 E-value=0.02 Score=71.73 Aligned_cols=138 Identities=19% Similarity=0.208 Sum_probs=76.9
Q ss_pred cceecchhhHHHHHHHHhcCCCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++|.+..++.+...+...... .........+.++|+.|+|||+||+.+.+..- +.-...+-+..+...+...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~-----~~~~~~~~~d~s~~~~~~~ 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF-----GSEDAMIRLDMSEYMEKHT 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCccceEEEEchhcccccc
Confidence 56889999999998887531110 00223345677999999999999999987431 1112223334443222111
Q ss_pred HHHHHHHHhcCCCC--CCCChHHHHHHHHHHhCCCc-EEEEEeCCCCCChhhHHHHHhcccCC-----------CCCcEE
Q 047598 257 ISKALLESITRKPC--HLNTLNEVQVDLKTAVDGKR-FLLVLDDVWNEDYSLWVDLKAPLLAA-----------APNSKM 322 (1112)
Q Consensus 257 ~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~i 322 (1112)
+. .-++.... ...... .+.+.++.++ -+++||+++..+.+.+..+...+..+ ...+-+
T Consensus 584 ~~----~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~ 655 (821)
T CHL00095 584 VS----KLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLI 655 (821)
T ss_pred HH----HhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEE
Confidence 11 11221111 111112 2334444444 58889999888777777777665542 134556
Q ss_pred EEEcCC
Q 047598 323 IITTRH 328 (1112)
Q Consensus 323 ivTTR~ 328 (1112)
|+||..
T Consensus 656 I~Tsn~ 661 (821)
T CHL00095 656 IMTSNL 661 (821)
T ss_pred EEeCCc
Confidence 666664
No 216
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.39 E-value=0.016 Score=62.86 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=70.2
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHH
Q 047598 182 GRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKAL 261 (1112)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 261 (1112)
+|........+++.... .+...+-+.|+|..|+|||.||.++++..... . ..+.+++++ +++..+
T Consensus 135 ~~~~~~~~~~~fi~~~~----~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~----g-~~v~~~~~~------~l~~~l 199 (306)
T PRK08939 135 DRLDALMAALDFLEAYP----PGEKVKGLYLYGDFGVGKSYLLAAIANELAKK----G-VSSTLLHFP------EFIREL 199 (306)
T ss_pred HHHHHHHHHHHHHHHhh----ccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc----C-CCEEEEEHH------HHHHHH
Confidence 44444555555554311 11234578999999999999999999986422 2 234555553 444555
Q ss_pred HHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHH--HHhcccC-C-CCCcEEEEEcCC
Q 047598 262 LESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVD--LKAPLLA-A-APNSKMIITTRH 328 (1112)
Q Consensus 262 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l~~-~-~~gs~iivTTR~ 328 (1112)
-...... ...+ .+.. +. +-=||||||+-.+....|.. +...+.. . ..+-.+|+||.-
T Consensus 200 k~~~~~~-----~~~~---~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 200 KNSISDG-----SVKE---KIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HHHHhcC-----cHHH---HHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 4444211 2222 2222 22 45689999997766667763 4444422 1 245568888864
No 217
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.31 E-value=0.03 Score=62.49 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=82.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCC----------------CCce
Q 047598 179 AVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDF----------------KFDI 242 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~----------------~F~~ 242 (1112)
.++|-+....++..+... .......+-++|++|+||||+|..+.+..--..... ....
T Consensus 2 ~~~~~~~~~~~l~~~~~~------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE------SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CcccchhHHHHHHHHHHh------cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCc
Confidence 356777778888888764 112233589999999999999988887653110000 1123
Q ss_pred eEEEEeCCCCC---HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCC
Q 047598 243 KAWVCISDVFD---VLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPN 319 (1112)
Q Consensus 243 ~~wv~~~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 319 (1112)
+..+..+.... ..+..+++.+....... .++.-++++|+++....+.-..+...+......
T Consensus 76 ~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 76 FLELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred eEEecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 33444443333 23333333333222110 356789999999876654555555555555567
Q ss_pred cEEEEEcCCh-hhhhhcC-CCceeeCCC
Q 047598 320 SKMIITTRHS-HVASTMG-PIKHYNLKR 345 (1112)
Q Consensus 320 s~iivTTR~~-~v~~~~~-~~~~~~l~~ 345 (1112)
+.+|++|... .+..... ....+.+.+
T Consensus 140 ~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 140 TRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred eEEEEEcCChhhccchhhhcceeeecCC
Confidence 7888888743 3333221 234566666
No 218
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.29 E-value=0.0038 Score=61.87 Aligned_cols=99 Identities=22% Similarity=0.232 Sum_probs=50.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
.-+.|+|..|+|||.||.++.+....+ -..+.|+++ .+++..+ ..... ....+..... +.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~-----g~~v~f~~~------~~L~~~l----~~~~~-~~~~~~~~~~----l~ 107 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK-----GYSVLFITA------SDLLDEL----KQSRS-DGSYEELLKR----LK 107 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-----T--EEEEEH------HHHHHHH----HCCHC-CTTHCHHHHH----HH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC-----CcceeEeec------Cceeccc----ccccc-ccchhhhcCc----cc
Confidence 469999999999999999998765322 123556654 3333333 22211 1122222222 22
Q ss_pred CCcEEEEEeCCCCCChhhHHH--HHhcccCC-CCCcEEEEEcCC
Q 047598 288 GKRFLLVLDDVWNEDYSLWVD--LKAPLLAA-APNSKMIITTRH 328 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTTR~ 328 (1112)
+-=||||||+-......|.. +...+... ..+ .+||||..
T Consensus 108 -~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 108 -RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp -TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred -cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 23478899997665555543 11111111 123 58888874
No 219
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.16 Score=55.71 Aligned_cols=93 Identities=17% Similarity=0.247 Sum_probs=63.9
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC-hhhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCC
Q 047598 288 GKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH-SHVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSL 365 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 365 (1112)
+++=++|+|+++......+..+...+-.-.+++.+|++|.+ ..+... .+-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 45568899999888888888888887766667766666655 444433 2334688999999999998887641 1
Q ss_pred CCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 366 KAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
+ + ...++..++|.|.....+
T Consensus 206 -~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -A-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -C-h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123567889999755433
No 220
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.28 E-value=0.035 Score=58.24 Aligned_cols=173 Identities=19% Similarity=0.193 Sum_probs=93.3
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCH---
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDV--- 254 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~--- 254 (1112)
..++|-.++..++-.++..+-.. +...-|.|+|+.|+|||+|...+..+.+. -+++| +-|........
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~----gEsnsviiigprgsgkT~li~~~Ls~~q~--~~E~~---l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH----GESNSVIIIGPRGSGKTILIDTRLSDIQE--NGENF---LLVRLNGELQTDKI 94 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh----cCCCceEEEccCCCCceEeeHHHHhhHHh--cCCeE---EEEEECccchhhHH
Confidence 35778888888887777653221 22346789999999999998887776211 11333 33444443322
Q ss_pred --HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC------CCcEEEEEeCCCCCChhhHHHHHhc-c----cCCCCCcE
Q 047598 255 --LSISKALLESITRKPCHLNTLNEVQVDLKTAVD------GKRFLLVLDDVWNEDYSLWVDLKAP-L----LAAAPNSK 321 (1112)
Q Consensus 255 --~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~~~~~~l~~~-l----~~~~~gs~ 321 (1112)
..+.+++..++...........+...++-..|+ +-+++.|+|..+-...-.-..+.-. | ....|-|-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Pici 174 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICI 174 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEE
Confidence 334444444433322222333333444444443 2357888887754321111111111 1 12345677
Q ss_pred EEEEcCCh-------hhhhhcCCCceeeCCCCChHhHHHHHHHhH
Q 047598 322 MIITTRHS-------HVASTMGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 322 iivTTR~~-------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
|-+|||-. .|-.......++-+..+.-++...+++...
T Consensus 175 ig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 175 IGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred EEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 88899854 233333333456677777777777777655
No 221
>PRK04296 thymidine kinase; Provisional
Probab=96.22 E-value=0.012 Score=59.33 Aligned_cols=114 Identities=12% Similarity=-0.040 Sum_probs=62.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHH
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCH--LNTLNEVQVDLKTA 285 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~ 285 (1112)
.++.|+|..|.||||+|..+..+.... ...++.+. ..++.......++++++..... ....++....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~-----g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER-----GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc-----CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-
Confidence 478899999999999998888765322 22233331 1112122233345555432211 2234444445544
Q ss_pred hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhh
Q 047598 286 VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHV 331 (1112)
Q Consensus 286 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v 331 (1112)
..++.-+||+|.+.--+.++..++...+ ...|..||+|.++.+.
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 3344558999999543222233333332 2357789999987543
No 222
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.21 E-value=0.017 Score=59.61 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=36.5
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSIS 258 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 258 (1112)
..-+++.|+|.+|+|||++|.++..... .....++|++... +....+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~-----~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAA-----RQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEEEECCC-CCHHHHH
Confidence 4568999999999999999999876543 2346789999876 5554443
No 223
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.0027 Score=64.16 Aligned_cols=103 Identities=25% Similarity=0.324 Sum_probs=47.1
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEcccc--ccc-cccccccCCCCCcEEeecCCCCCcccCc--cccCCccccE
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADT--MIR-TLPESTNSLLNLEILILRNCSRLKKLPS--KMRNLINLHH 666 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~ 666 (1112)
..|..|++.+..++++ ..+..|++|++|.+|.| .+. .++....++++|++|++++| .+..+.. .+.++.+|..
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhh
Confidence 3444444444433332 23445556666666666 322 33333344466666666665 3332110 1344555556
Q ss_pred EeecCCCccccCCC----CCCCCCCCCccCeeeec
Q 047598 667 LDIKGANLLREMPL----GMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 667 L~L~~~~~l~~lp~----~i~~l~~L~~L~~~~~~ 697 (1112)
|++.+|.... +-. .+.-+++|..|+...+.
T Consensus 121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 6665555221 111 13345555555544443
No 224
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.20 E-value=0.0034 Score=58.20 Aligned_cols=23 Identities=48% Similarity=0.616 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
||+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998864
No 225
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.15 Score=57.99 Aligned_cols=100 Identities=16% Similarity=0.266 Sum_probs=64.3
Q ss_pred cceecchhhHHHHHHHHhcCCCC----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
..+-|.+..+.++.+++...... ..+-...+=|.++|++|.|||.||++++++..+- ++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP----------f~~isAp-- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP----------FLSISAP-- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc----------eEeecch--
Confidence 46778999888888877542211 0122345667899999999999999999987644 2333322
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCC
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWN 300 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 300 (1112)
+|+..+. ....+.+.+.+.+.-+.-++++++|+++-
T Consensus 258 ------eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ------EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ------hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 2222222 22333444445556677899999999974
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.15 E-value=0.0066 Score=66.29 Aligned_cols=102 Identities=21% Similarity=0.166 Sum_probs=54.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
.-+.++|..|+|||+||.++++....+ -..++++++.. +...+..... . ...+... .+ +.+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~-----g~~V~y~t~~~------l~~~l~~~~~-~--~~~~~~~---~~-~~l~ 245 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR-----GKSVIYRTADE------LIEILREIRF-N--NDKELEE---VY-DLLI 245 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC-----CCeEEEEEHHH------HHHHHHHHHh-c--cchhHHH---HH-HHhc
Confidence 569999999999999999999876422 22456666533 2332222111 0 0111111 12 2222
Q ss_pred CCcEEEEEeCCCCCChhhHHH--HHhcccCC-CCCcEEEEEcCC
Q 047598 288 GKRFLLVLDDVWNEDYSLWVD--LKAPLLAA-APNSKMIITTRH 328 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTTR~ 328 (1112)
.-=||||||+-.+....|.. +...+... ..+-.+||||..
T Consensus 246 -~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 246 -NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred -cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 22489999996554344432 22222211 234568888874
No 227
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.13 E-value=0.015 Score=58.05 Aligned_cols=27 Identities=48% Similarity=0.636 Sum_probs=23.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
...+|.++|+.|+||||+|+.+++...
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999988754
No 228
>PRK04132 replication factor C small subunit; Provisional
Probab=96.12 E-value=0.15 Score=62.55 Aligned_cols=154 Identities=13% Similarity=-0.017 Sum_probs=94.1
Q ss_pred cCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEE
Q 047598 215 MAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLV 294 (1112)
Q Consensus 215 ~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlV 294 (1112)
+.++||||+|..++++.--. ..-..++-++.++..++. ..+++++.+...... -..+.-++|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~---~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvI 635 (846)
T PRK04132 574 PTVLHNTTAALALARELFGE---NWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIF 635 (846)
T ss_pred CCcccHHHHHHHHHHhhhcc---cccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEE
Confidence 66899999999999874211 111235566666654444 334444333211100 012457999
Q ss_pred EeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCCh-hhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHH
Q 047598 295 LDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHS-HVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISE 372 (1112)
Q Consensus 295 lDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~ 372 (1112)
+|+++..+......+...+-.....+++|.++.+. .+.... +....+.+.+++.++-.+.+...+-..+-..+ +
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~ 711 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----E 711 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----H
Confidence 99998877667777777666544566777666554 333222 23468999999999988887765532221111 3
Q ss_pred HHHHHHHhhcCCchHHHH
Q 047598 373 LFRKKVVGKCGGLPLAAK 390 (1112)
Q Consensus 373 ~~~~~i~~~c~glPlai~ 390 (1112)
+....|++.|+|.+-.+.
T Consensus 712 e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 356889999999885443
No 229
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.11 E-value=0.022 Score=59.52 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=34.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..-.++.|+|.+|+|||++|.+++..... .-..++|++.. .++...
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~-----~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAK-----NGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEECC-CCCHHH
Confidence 45679999999999999999998875432 23568899887 555444
No 230
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.11 E-value=0.028 Score=68.48 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=68.4
Q ss_pred cceecchhhHHHHHHHHhcCCCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++|.+..++.|...+...... .........+.++|+.|+|||++|+.+..... ..| +.+.++......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~---i~id~se~~~~~- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IEL---LRFDMSEYMERH- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CCc---EEeechhhcccc-
Confidence 35899999999998887631110 00123456789999999999999999987652 122 233433322111
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhC-CCcEEEEEeCCCCCChhhHHHHHhccc
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVD-GKRFLLVLDDVWNEDYSLWVDLKAPLL 314 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~ 314 (1112)
.+..-++.... ....+ ....+.+.++ ...-+|+||+++..+.+.+..+...+.
T Consensus 529 ---~~~~LiG~~~g-yvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 ---TVSRLIGAPPG-YVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred ---cHHHHcCCCCC-ccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 11111222211 00000 0112222333 334699999998877777777766554
No 231
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.10 E-value=0.007 Score=57.51 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=61.5
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHH
Q 047598 181 YGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKA 260 (1112)
Q Consensus 181 vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 260 (1112)
||+-..+.++.+.+... ......|.|+|..|+||+++|+.++...... ...|..+ .+... . .+
T Consensus 1 vG~S~~~~~l~~~l~~~------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~--~~~~~~~---~~~~~-~-----~~ 63 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL------AKSSSPVLITGEPGTGKSLLARALHRYSGRA--NGPFIVI---DCASL-P-----AE 63 (138)
T ss_dssp --SCHHHHHHHHHHHHH------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTC--CS-CCCC---CHHCT-C-----HH
T ss_pred CCCCHHHHHHHHHHHHH------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCcc--CCCeEEe---chhhC-c-----HH
Confidence 46666777777766541 1223467899999999999999998865321 1223211 00000 0 11
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCC-CCCcEEEEEcCCh
Q 047598 261 LLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAA-APNSKMIITTRHS 329 (1112)
Q Consensus 261 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTTR~~ 329 (1112)
+ +.. .+.--++|+|+..-.......+...+... ....|+|.||+..
T Consensus 64 ~--------------------l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 64 L--------------------LEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp H--------------------HHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred H--------------------HHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1 111 14445779999776655555566655532 5677999999853
No 232
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.09 E-value=0.092 Score=65.23 Aligned_cols=180 Identities=13% Similarity=0.104 Sum_probs=93.8
Q ss_pred cceecchhhHHHHHHHHhcCCCC-----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+.|.+..++.+.+.+.-+-.. ..+-...+-+.++|++|+|||++|+++++.... .| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~-----~f-----i~v~~~- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA-----NF-----IAVRGP- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-----CE-----EEEehH-
Confidence 45778888888777765321000 001122345788999999999999999987532 23 222211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC------------hhhHHHHHhcccC--CCC
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED------------YSLWVDLKAPLLA--AAP 318 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~~~~~~l~~~l~~--~~~ 318 (1112)
+ ++.... ......+...+...-...+.+|++|+++... ......+...+.. ...
T Consensus 522 ---~----l~~~~v-----Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 ---E----ILSKWV-----GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred ---H----Hhhccc-----CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 1 111110 0111122222333334567999999985310 0111223333322 123
Q ss_pred CcEEEEEcCChhhhhhc-----CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCc
Q 047598 319 NSKMIITTRHSHVASTM-----GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGL 385 (1112)
Q Consensus 319 gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1112)
+--||.||..++..... .-...+.+...+.++-.++|..+..+... ..+..+ ..+++.+.|.
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~~~l----~~la~~t~g~ 656 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AEDVDL----EELAEMTEGY 656 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHcCCC
Confidence 44566677666544321 23457888888888888898766533221 122222 4566666664
No 233
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.08 E-value=0.038 Score=65.26 Aligned_cols=45 Identities=27% Similarity=0.387 Sum_probs=35.9
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
..++|.+..+..+...+.. ....-+.|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~--------~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCG--------PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhC--------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999998887654 12335678999999999999999864
No 234
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.07 E-value=0.028 Score=55.30 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=30.1
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
++.|+|.+|+||||++..+..... ..-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~-----~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA-----TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH-----hcCCEEEEEECCcchH
Confidence 468999999999999999987653 2235677887766543
No 235
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.04 E-value=0.054 Score=62.58 Aligned_cols=161 Identities=17% Similarity=0.105 Sum_probs=82.5
Q ss_pred cceecchhhHHHHHHHHhcCC--CCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHH
Q 047598 178 RAVYGRDKDKARILKMVLSTD--EKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVL 255 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~--~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 255 (1112)
..+.|.+..++.+.+....-. ....+-...+-|-++|++|.|||.+|+.+.+..... | +-+..+.-+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~-----~---~~l~~~~l~--- 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP-----L---LRLDVGKLF--- 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----E---EEEEhHHhc---
Confidence 457787766666554321100 000012334568899999999999999999875422 2 112221110
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-------hh-h----HHHHHhcccCCCCCcEEE
Q 047598 256 SISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED-------YS-L----WVDLKAPLLAAAPNSKMI 323 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~-~----~~~l~~~l~~~~~gs~ii 323 (1112)
... .......+...+...-...+++|++|+++..- .. . ...+...+.....+--||
T Consensus 297 -------~~~-----vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 297 -------GGI-----VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred -------ccc-----cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 000 00111122222222223578999999996310 00 0 111122222222334466
Q ss_pred EEcCChhhhh-h----cCCCceeeCCCCChHhHHHHHHHhHhC
Q 047598 324 ITTRHSHVAS-T----MGPIKHYNLKRLLDEDCWSIFIKHAYE 361 (1112)
Q Consensus 324 vTTR~~~v~~-~----~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 361 (1112)
.||...+... . ..-...+.+...+.++-.++|..+...
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 6776554221 1 123457888888889999999887754
No 236
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.03 E-value=0.025 Score=65.35 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=55.8
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 047598 204 DANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLK 283 (1112)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 283 (1112)
.+..+|+-++|++|+||||||.-++++. .| .++-+.+|+.-....+-..|...+....
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa-------GY-sVvEINASDeRt~~~v~~kI~~avq~~s-------------- 380 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA-------GY-SVVEINASDERTAPMVKEKIENAVQNHS-------------- 380 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc-------Cc-eEEEecccccccHHHHHHHHHHHHhhcc--------------
Confidence 4567899999999999999999999864 23 4667788887777666666655544322
Q ss_pred HHh--CCCcEEEEEeCCCCCC
Q 047598 284 TAV--DGKRFLLVLDDVWNED 302 (1112)
Q Consensus 284 ~~l--~~kr~LlVlDdv~~~~ 302 (1112)
.+ .+++.-+|+|.++...
T Consensus 381 -~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 381 -VLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred -ccccCCCcceEEEecccCCc
Confidence 22 2578889999997755
No 237
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.01 E-value=0.00027 Score=84.18 Aligned_cols=113 Identities=21% Similarity=0.260 Sum_probs=55.8
Q ss_pred CCCCceEEEeccCCCCC---CCccCCCCCCceeEEEEcCc-CCCCCC-----CCCCCCCCcceEEecCCCCceecCcccc
Q 047598 776 HKCIKNLTIKQYNGARF---PSWLGDPLFSKMEVLKLENC-WNCTSL-----PSLGLLSSLRELTIQGLTKLKSIGSEVY 846 (1112)
Q Consensus 776 ~~~L~~L~l~~~~~~~~---p~~~~~~~l~~L~~L~L~~~-~~~~~l-----~~l~~l~~L~~L~L~~~~~l~~i~~~~~ 846 (1112)
.+.++.|.+.++..... -.... ..++|+.|++++| ...... .....+++|+.|+++.+..+...+....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALAL--KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHh--hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 45666666665532211 11111 2567777777763 221111 1234456677777777665544433332
Q ss_pred CCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCC
Q 047598 847 GKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKL 901 (1112)
Q Consensus 847 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L 901 (1112)
.. .+++|+.|.+.+|..+.. .........+|+|++|++++|..+
T Consensus 265 ~~----~c~~L~~L~l~~c~~lt~-------~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 AS----RCPNLETLSLSNCSNLTD-------EGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred Hh----hCCCcceEccCCCCccch-------hHHHHHHHhcCcccEEeeecCccc
Confidence 21 156666666665544221 111222245666777777766554
No 238
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.01 E-value=0.18 Score=56.24 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc--CCCCceeEEEEeCCCCCHHHHHHHH
Q 047598 184 DKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK--DFKFDIKAWVCISDVFDVLSISKAL 261 (1112)
Q Consensus 184 ~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--~~~F~~~~wv~~~~~~~~~~~~~~i 261 (1112)
+.-.+.+.+.+... ......+|+|.|.=|+||||+.+.+.+....... ...+...+|-..+...-...++.++
T Consensus 2 ~~~a~~la~~I~~~-----~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l 76 (325)
T PF07693_consen 2 KPYAKALAEIIKNP-----DSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEEL 76 (325)
T ss_pred hHHHHHHHHHHhcc-----CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHH
Confidence 34456666666541 1256789999999999999999998877643200 0111233444443332334555555
Q ss_pred HHHh
Q 047598 262 LESI 265 (1112)
Q Consensus 262 l~~l 265 (1112)
..++
T Consensus 77 ~~~l 80 (325)
T PF07693_consen 77 FDQL 80 (325)
T ss_pred HHHH
Confidence 5544
No 239
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.00 E-value=0.04 Score=58.10 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=40.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHHHHHHHHHHh
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLSISKALLESI 265 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 265 (1112)
..-.++.|+|.+|+|||++|.+++-...... .++....++|++....++...+ .++++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~ 77 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERF 77 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHh
Confidence 4567999999999999999999874432210 0012367899998887765443 3344443
No 240
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.99 E-value=0.041 Score=57.56 Aligned_cols=94 Identities=18% Similarity=0.132 Sum_probs=54.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCC---------CCCCC
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLSISKALLESITRKP---------CHLNT 274 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~---------~~~~~ 274 (1112)
..-.++.|+|.+|+|||++|.+++....... -.+.=..++|++....++...+. ++.+...... ....+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 4567999999999999999998876532110 00011467899988777754443 3333322211 01233
Q ss_pred hHHHHHHHHHHhC----CCcEEEEEeCCC
Q 047598 275 LNEVQVDLKTAVD----GKRFLLVLDDVW 299 (1112)
Q Consensus 275 ~~~~~~~l~~~l~----~kr~LlVlDdv~ 299 (1112)
.++....+..... .+.-+||+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4444444444332 344578888874
No 241
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.27 Score=54.13 Aligned_cols=181 Identities=13% Similarity=0.027 Sum_probs=99.4
Q ss_pred hHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----cCCCCceeEEEEeCCCCCHHHHHHH
Q 047598 186 DKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-----KDFKFDIKAWVCISDVFDVLSISKA 260 (1112)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~~~~F~~~~wv~~~~~~~~~~~~~~ 260 (1112)
.-+++...+.. +.-..-+-+.|+.|+||+++|..+..-.--.. ..+.-...-++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~-------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--- 79 (334)
T PRK07993 10 DYEQLVGSYQA-------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--- 79 (334)
T ss_pred HHHHHHHHHHc-------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE---
Confidence 34556666643 23356778999999999999988655431100 0010000011111122221111
Q ss_pred HHHHhcCCCC-CCCChHHHH---HHHHH-HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCCh-hhhhh
Q 047598 261 LLESITRKPC-HLNTLNEVQ---VDLKT-AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHS-HVAST 334 (1112)
Q Consensus 261 il~~l~~~~~-~~~~~~~~~---~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~ 334 (1112)
..... ..-.+++.. +.+.. -..+++=++|+|+++......-..+...+-.-..++.+|++|.+. .+...
T Consensus 80 -----~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 80 -----TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred -----ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 00000 111233322 22221 123567789999998777677777777776655677777777654 44433
Q ss_pred -cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHH
Q 047598 335 -MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAK 390 (1112)
Q Consensus 335 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 390 (1112)
.+-...+.+.+++.+++.+.+.... + .+ .+.+..++..++|.|....
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~-~----~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREV-T----MS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHcc-C----CC----HHHHHHHHHHcCCCHHHHH
Confidence 2334578999999999888776532 1 11 1135678899999996443
No 242
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.96 E-value=0.034 Score=54.48 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=32.6
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 180 VYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
++|....+.++++.+.... ..+ .-|.|+|..|+||+.+|+.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a-----~~~-~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----SSD-LPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----TST-S-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHh-----CCC-CCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4677888888888776521 122 356699999999999999999854
No 243
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.96 E-value=0.15 Score=50.60 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=36.6
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.++||-++.++++.-.-.+ ++..-+.|.||+|+||||-+..+++..
T Consensus 26 l~dIVGNe~tv~rl~via~~--------gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKE--------GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHc--------CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 35789999988887655533 456678899999999999888777654
No 244
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.95 E-value=0.073 Score=66.12 Aligned_cols=181 Identities=14% Similarity=0.091 Sum_probs=91.7
Q ss_pred cceecchhhHHHHHHHHhcCCCC-----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+.|.+..++++.+++..+-.. ..+-...+-+.++|.+|+|||+||+.+++... ..| +.+..+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~-----~~~---i~i~~~--- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG-----AYF---ISINGP--- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC-----CeE---EEEecH---
Confidence 35889999999988876421000 00112345688999999999999999988643 122 122211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hhhHHHHHhcccCC-CCCc
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED-----------YSLWVDLKAPLLAA-APNS 320 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs 320 (1112)
++. ... .......+...+.......+.+|++|+++... ......+...+... ..+.
T Consensus 247 ---~i~----~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 ---EIM----SKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred ---HHh----ccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 110 000 00111222233333445567899999985321 01112232222221 2233
Q ss_pred EEEE-EcCChhh-hhhc----CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch
Q 047598 321 KMII-TTRHSHV-ASTM----GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 321 ~iiv-TTR~~~v-~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1112)
.++| ||....- ...+ .-...+.+...+.++-.+++..+.-.... ..+. ....+++.+.|.-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~----~l~~la~~t~G~~ 381 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDV----DLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cccc----CHHHHHHhCCCCC
Confidence 3444 5544321 1111 12346778888888888888755422111 1111 2356777777754
No 245
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.93 E-value=0.032 Score=57.97 Aligned_cols=44 Identities=18% Similarity=0.173 Sum_probs=32.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
..-.++.|.|.+|+||||+|.+++.... ..-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~-----~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA-----GQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEECCCCCH
Confidence 4567999999999999999999886643 1234677887765554
No 246
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.93 E-value=0.0037 Score=37.42 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=9.3
Q ss_pred CcEEEcccccccccccccc
Q 047598 617 LRYLNLADTMIRTLPESTN 635 (1112)
Q Consensus 617 Lr~L~Ls~n~i~~lp~~i~ 635 (1112)
|++|+|++|.++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4455555555555544443
No 247
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.13 Score=58.31 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=88.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
.=|-+||++|.|||-||++|+|..... | ++|-.+ +++.... ........+.+++.=.
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~N-----F-----isVKGP----ELlNkYV---------GESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGAN-----F-----ISVKGP----ELLNKYV---------GESERAVRQVFQRARA 602 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCc-----e-----EeecCH----HHHHHHh---------hhHHHHHHHHHHHhhc
Confidence 347789999999999999999987644 3 344322 1211111 1122223334444445
Q ss_pred CCcEEEEEeCCCCCC-----------hhhHHHHHhcccCC--CCCcEEEEEcCChhhhhhc--C---CCceeeCCCCChH
Q 047598 288 GKRFLLVLDDVWNED-----------YSLWVDLKAPLLAA--APNSKMIITTRHSHVASTM--G---PIKHYNLKRLLDE 349 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~--~---~~~~~~l~~L~~~ 349 (1112)
.-+++|++|.++.-- .....++..-+... ..|--||-.|..+++.... . -.+..-++.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 679999999986311 11222333333322 2566678888777765432 2 2356778888888
Q ss_pred hHHHHHHHhHhCCCCC-CCchhHHHHHHHHHhhcCCc
Q 047598 350 DCWSIFIKHAYESRSL-KAHQISELFRKKVVGKCGGL 385 (1112)
Q Consensus 350 ~~~~Lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~gl 385 (1112)
|-.++++...-....+ ..+-.++++|.. .+|.|.
T Consensus 683 eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 683 ERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 8889998877532222 233455555442 355554
No 248
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.89 E-value=0.059 Score=51.52 Aligned_cols=101 Identities=19% Similarity=0.143 Sum_probs=56.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEe----CCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCI----SDVFDVLSISKALLESITRKPCHLNTLNEVQVDL 282 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~----~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l 282 (1112)
-.+++|+|..|.|||||++.+....... ...+|+.- +-.+. ...-+...-.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~------~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~l 81 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPD------EGIVTWGSTVKIGYFEQ------------------LSGGEKMRLAL 81 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCC------ceEEEECCeEEEEEEcc------------------CCHHHHHHHHH
Confidence 3589999999999999999998765322 11222210 00000 11112223345
Q ss_pred HHHhCCCcEEEEEeCCCC-CChhhHHHHHhcccCCCCCcEEEEEcCChhhhh
Q 047598 283 KTAVDGKRFLLVLDDVWN-EDYSLWVDLKAPLLAAAPNSKMIITTRHSHVAS 333 (1112)
Q Consensus 283 ~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 333 (1112)
.+.+..++-++++|+.-. -+......+...+... +..||++|.+...+.
T Consensus 82 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 82 AKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 556666777899998743 2223333444444332 346888887766553
No 249
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.83 E-value=0.0031 Score=60.18 Aligned_cols=87 Identities=22% Similarity=0.119 Sum_probs=46.0
Q ss_pred EEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCC
Q 047598 210 IPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGK 289 (1112)
Q Consensus 210 v~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (1112)
|.++|.+|+|||+||+.+++.... ...-+.++...+..++....--. ... .......+...+ .+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~--------~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~ 65 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR--------PVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RK 65 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC--------EEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc--------ceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----cc
Confidence 679999999999999999876521 22345666666665543322111 000 000000000011 17
Q ss_pred cEEEEEeCCCCCChhhHHHHHhc
Q 047598 290 RFLLVLDDVWNEDYSLWVDLKAP 312 (1112)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~l~~~ 312 (1112)
..++|||++.......+..+...
T Consensus 66 ~~il~lDEin~a~~~v~~~L~~l 88 (139)
T PF07728_consen 66 GGILVLDEINRAPPEVLESLLSL 88 (139)
T ss_dssp EEEEEESSCGG--HHHHHTTHHH
T ss_pred eeEEEECCcccCCHHHHHHHHHH
Confidence 89999999976554444444433
No 250
>PHA02244 ATPase-like protein
Probab=95.80 E-value=0.075 Score=57.92 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-|.|+|.+|+|||++|++++...
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998864
No 251
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.0005 Score=69.16 Aligned_cols=59 Identities=31% Similarity=0.317 Sum_probs=26.6
Q ss_pred ccCCcccEEEecccccccccccccCCCcCcEEEccccccccccc--cccCCCCCcEEeecCC
Q 047598 589 PKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE--STNSLLNLEILILRNC 648 (1112)
Q Consensus 589 ~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~--~i~~L~~L~~L~L~~~ 648 (1112)
.+++.|+||.|+-|+|+++ ..+..|++|+.|+|..|.|..+-+ .+.+|++|++|-|..|
T Consensus 38 ~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 4445555555555555444 234445555555555554443321 2334444444444443
No 252
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.77 E-value=0.32 Score=48.80 Aligned_cols=122 Identities=20% Similarity=0.258 Sum_probs=71.6
Q ss_pred CCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHH
Q 047598 176 TERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVL 255 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 255 (1112)
.-..++|.+..++.+++--..-- .+....-|-+||.-|+||+.|++++.+...-+ .-.- |.|.+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~----~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-----glrL--VEV~k~---- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFA----EGLPANNVLLWGARGTGKSSLVKALLNEYADE-----GLRL--VEVDKE---- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHH----cCCcccceEEecCCCCChHHHHHHHHHHHHhc-----CCeE--EEEcHH----
Confidence 34568999999998877543211 12334567899999999999999999876533 2222 222211
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHHHHHhcccCC---CCCcEEEEEcCCh
Q 047598 256 SISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNE-DYSLWVDLKAPLLAA---APNSKMIITTRHS 329 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~gs~iivTTR~~ 329 (1112)
+..+...+...|+. ...||.|..||+.-+ ....+..+...+..+ .+...++..|.++
T Consensus 123 ---------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ---------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ---------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11112222222222 367999999999643 345666677666543 2344455555443
No 253
>PRK13695 putative NTPase; Provisional
Probab=95.72 E-value=0.012 Score=58.46 Aligned_cols=23 Identities=43% Similarity=0.476 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988764
No 254
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.19 Score=55.13 Aligned_cols=71 Identities=11% Similarity=0.144 Sum_probs=44.8
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChh-hhhhc-CCCceeeCCCCChHhHHHHHHHh
Q 047598 288 GKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSH-VASTM-GPIKHYNLKRLLDEDCWSIFIKH 358 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 358 (1112)
+++=++|+|++...+...-..+...+.....+..+|++|.+.. +...+ .....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688877665555555555544334566777777654 43332 23467889999999988877653
No 255
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.71 E-value=0.31 Score=49.27 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=95.5
Q ss_pred cceecchhhHHH---HHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCH
Q 047598 178 RAVYGRDKDKAR---ILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDV 254 (1112)
Q Consensus 178 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~ 254 (1112)
..++|.++.+.+ |++.|..++. -++-..+-|..+|++|.|||.+|+++.+...+- | +.+..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~--Fg~WAPknVLFyGppGTGKTm~Akalane~kvp-----~-----l~vka---- 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPER--FGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP-----L-----LLVKA---- 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHH--hcccCcceeEEECCCCccHHHHHHHHhcccCCc-----e-----EEech----
Confidence 568898876554 4555543211 133456788999999999999999999987643 2 22211
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHH-HHHhCCCcEEEEEeCCCCCCh--------hhHHHHHhc----ccC--CCCC
Q 047598 255 LSISKALLESITRKPCHLNTLNEVQVDL-KTAVDGKRFLLVLDDVWNEDY--------SLWVDLKAP----LLA--AAPN 319 (1112)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~~--------~~~~~l~~~----l~~--~~~g 319 (1112)
..-|-+..| +-...+..+ .+.-+.-++.+.+|.++-... .+...+..+ +.. .+.|
T Consensus 185 ---t~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG 254 (368)
T COG1223 185 ---TELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG 254 (368)
T ss_pred ---HHHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc
Confidence 111111111 111122222 223345689999998853210 111112222 221 2356
Q ss_pred cEEEEEcCChhhhhhcC---CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCc
Q 047598 320 SKMIITTRHSHVASTMG---PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGL 385 (1112)
Q Consensus 320 s~iivTTR~~~v~~~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1112)
-..|-.|....+....- -...++..--+++|-.+++..++-.-.-+-+ .. .+.++++.+|.
T Consensus 255 VvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~-~~----~~~~~~~t~g~ 318 (368)
T COG1223 255 VVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD-AD----LRYLAAKTKGM 318 (368)
T ss_pred eEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc-cC----HHHHHHHhCCC
Confidence 66677777666554321 2245666667788888888887743322211 11 24566666663
No 256
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.71 E-value=0.082 Score=52.79 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=58.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcC--C-------------CCCC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITR--K-------------PCHL 272 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~--~-------------~~~~ 272 (1112)
.+++|+|..|.|||||++.+....... ...+++. .. ++.......-..++. + ....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~------~G~i~~~--g~-~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQ------QGEITLD--GV-PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCC------CCEEEEC--CE-EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 489999999999999999998764322 1111111 00 111110011111110 0 0001
Q ss_pred CChHHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHHHHHhcccCCCCCcEEEEEcCChhhhh
Q 047598 273 NTLNEVQVDLKTAVDGKRFLLVLDDVWNE-DYSLWVDLKAPLLAAAPNSKMIITTRHSHVAS 333 (1112)
Q Consensus 273 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 333 (1112)
..-+...-.+.+.+-.++=++++|+.... +......+...+.....+..||++|.+.....
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 11122223455666677888999987542 22222333333332224677888888876654
No 257
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.66 E-value=0.071 Score=52.63 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=61.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc-ccccc--CCCCc--eeEEEEeCCCCCHHHHHHHHHHHhcCCCC----CC--CCh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK-SLNAK--DFKFD--IKAWVCISDVFDVLSISKALLESITRKPC----HL--NTL 275 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~--~~~F~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~--~~~ 275 (1112)
-.+++|+|..|+|||||.+.+..+. .+... ...|. .+.|+ .+ .+.++.++.... .. -..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3589999999999999999986321 11100 00111 12232 22 345566554321 11 111
Q ss_pred -HHHHHHHHHHhCCC--cEEEEEeCCCCC-ChhhHHHHHhcccCC-CCCcEEEEEcCChhhhh
Q 047598 276 -NEVQVDLKTAVDGK--RFLLVLDDVWNE-DYSLWVDLKAPLLAA-APNSKMIITTRHSHVAS 333 (1112)
Q Consensus 276 -~~~~~~l~~~l~~k--r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~ 333 (1112)
+...-.+.+.+-.+ .=++++|+.-.. +......+...+... ..|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22223345555566 678888986432 223333333333321 24667888888877654
No 258
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.66 E-value=0.031 Score=56.66 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCC-CChhhHHHHHhcccCC--CCCcEEEEEcCChhhhhhcC
Q 047598 278 VQVDLKTAVDGKRFLLVLDDVWN-EDYSLWVDLKAPLLAA--APNSKMIITTRHSHVASTMG 336 (1112)
Q Consensus 278 ~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~~ 336 (1112)
..-.+.+.|-..+-+|+.|+--. -+...-..+...+... ..|..||+.|-++.+|..+.
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 33457778888888999996421 1112222333333322 35788999999999998654
No 259
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.63 E-value=0.0042 Score=62.50 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=24.9
Q ss_pred CCceeEEEEcCcCCCCCCC-----CCCCCCCcceEEecCCC
Q 047598 801 FSKMEVLKLENCWNCTSLP-----SLGLLSSLRELTIQGLT 836 (1112)
Q Consensus 801 l~~L~~L~L~~~~~~~~l~-----~l~~l~~L~~L~L~~~~ 836 (1112)
+.+|+.|+|.+|.++..-+ .+...+.|+.|.+..|-
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 6788888888887653211 35556678888888874
No 260
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.62 E-value=0.0065 Score=61.54 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=7.5
Q ss_pred CCCCcCEEEEecC
Q 047598 937 RLNFLEHLRIGQC 949 (1112)
Q Consensus 937 ~l~~L~~L~L~~~ 949 (1112)
.+|+|++|.++.|
T Consensus 63 ~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 63 KLPKLKKLELSDN 75 (260)
T ss_pred CcchhhhhcccCC
Confidence 3555666666655
No 261
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.61 E-value=0.038 Score=58.47 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=41.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccccccc-CCCCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAK-DFKFDIKAWVCISDVFDVLSISKALLESIT 266 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 266 (1112)
.-.|.=|+|.+|+|||+||.+++-....... ++.=..++|++....|....+. +|++..+
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 3459999999999999999877654332211 1223579999999999887764 5666543
No 262
>PRK06696 uridine kinase; Validated
Probab=95.61 E-value=0.015 Score=60.39 Aligned_cols=44 Identities=23% Similarity=0.288 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 183 RDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
|.+.+++|.+.+... ..+...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~la~~~~~~-----~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 3 RKQLIKELAEHILTL-----NLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHHh-----CCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 566777787777641 13457899999999999999999998764
No 263
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.59 E-value=0.071 Score=52.70 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=56.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCce-eEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDI-KAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1112)
-.+++|+|..|+|||||++.+..-.......-.++. .+. .+.+... ...-+...-.+.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~-~~~q~~~------------------LSgGq~qrv~lara 85 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV-YKPQYID------------------LSGGELQRVAIAAA 85 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEE-EEcccCC------------------CCHHHHHHHHHHHH
Confidence 359999999999999999999875432100001111 010 1111111 11112223345566
Q ss_pred hCCCcEEEEEeCCCCC-ChhhHHHHHhcccCC--CCCcEEEEEcCChhhhhh
Q 047598 286 VDGKRFLLVLDDVWNE-DYSLWVDLKAPLLAA--APNSKMIITTRHSHVAST 334 (1112)
Q Consensus 286 l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~ 334 (1112)
+..++-++++|+--.. +......+...+... ..+..||++|.+......
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 6677889999987432 222222333333221 123567777777665543
No 264
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.56 E-value=0.081 Score=57.00 Aligned_cols=88 Identities=19% Similarity=0.167 Sum_probs=46.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF-DVLSISKALLESITRKPCHLNTLNEVQVDLKT 284 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 284 (1112)
..++++|+|++|+||||++..+......+ ..-..+..|+..... ...+.+....+.++.......+..++...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~---~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE---HGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH---cCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH
Confidence 45799999999999999998887654321 111245556554321 12223333333333332223334444444443
Q ss_pred HhCCCcEEEEEeCC
Q 047598 285 AVDGKRFLLVLDDV 298 (1112)
Q Consensus 285 ~l~~kr~LlVlDdv 298 (1112)
+.+ .=+|++|..
T Consensus 270 -~~~-~d~vliDt~ 281 (282)
T TIGR03499 270 -LRD-KDLILIDTA 281 (282)
T ss_pred -ccC-CCEEEEeCC
Confidence 333 346777753
No 265
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.53 E-value=0.032 Score=60.37 Aligned_cols=85 Identities=22% Similarity=0.184 Sum_probs=54.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCChHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKP-----CHLNTLNEVQ 279 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~ 279 (1112)
+.-+++-|+|++|+||||||.+++.... ..-..++|++....++.. .++.++... ....+.++..
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~-----~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l 122 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQ-----KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQAL 122 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHH
Confidence 4567999999999999999998876543 223567899887776653 334443321 1223445555
Q ss_pred HHHHHHhC-CCcEEEEEeCCC
Q 047598 280 VDLKTAVD-GKRFLLVLDDVW 299 (1112)
Q Consensus 280 ~~l~~~l~-~kr~LlVlDdv~ 299 (1112)
..+...++ +.--+||+|.|-
T Consensus 123 ~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 123 EIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHHhccCCCEEEEcchH
Confidence 55544443 456689999874
No 266
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.53 E-value=0.054 Score=58.96 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=42.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcccccc-ccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLN-AKDFKFDIKAWVCISDVFDVLSISKALLESITR 267 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 267 (1112)
..-+++-|+|.+|+|||+|+.+++-..... ..++.-..++|++....|+..++. ++++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 456799999999999999998866432211 000122478999999988887764 45666553
No 267
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.53 E-value=0.12 Score=51.29 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
-.+++|+|..|.|||||.+.++.-..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999987643
No 268
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.50 E-value=0.099 Score=53.96 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=69.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcccc-----ccccCC---CC---ceeEEEEeCC----C--CCH----------------
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKS-----LNAKDF---KF---DIKAWVCISD----V--FDV---------------- 254 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~-----~~~~~~---~F---~~~~wv~~~~----~--~~~---------------- 254 (1112)
.+++|+|+.|.|||||.+.+.--.. +...+. .+ ..+.||.=.. . .++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6999999999999999999987322 110000 01 2455553111 0 111
Q ss_pred ------HHHHHHHHHHhcCCCC------CCCChHHHHHHHHHHhCCCcEEEEEeCCC----CCChhhHHHHHhcccCCCC
Q 047598 255 ------LSISKALLESITRKPC------HLNTLNEVQVDLKTAVDGKRFLLVLDDVW----NEDYSLWVDLKAPLLAAAP 318 (1112)
Q Consensus 255 ------~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~----~~~~~~~~~l~~~l~~~~~ 318 (1112)
.+...+.++.++...- ....-+.-...|.+.|..++=|++||.-- ........++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 1333444444443221 11111222234677888999999999643 22233444445555443
Q ss_pred CcEEEEEcCChhhhhh
Q 047598 319 NSKMIITTRHSHVAST 334 (1112)
Q Consensus 319 gs~iivTTR~~~v~~~ 334 (1112)
|..||++|-+-.....
T Consensus 189 g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 GKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCEEEEEeCCcHHhHh
Confidence 8889999988655443
No 269
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.49 E-value=0.12 Score=50.86 Aligned_cols=120 Identities=13% Similarity=0.046 Sum_probs=60.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCc---eeEEEEeCCCCCH--HHHHHHHHHHhcCCCCCCCChHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFD---IKAWVCISDVFDV--LSISKALLESITRKPCHLNTLNEVQVD 281 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~---~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~ 281 (1112)
-.+++|+|..|.|||||++.+..........-.++ .+.++ .+.... ..+.+.+.-. .......-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 35899999999999999999987653221000111 12222 222211 1222222210 11112222233334
Q ss_pred HHHHhCCCcEEEEEeCCCCC-ChhhHHHHHhcccCCCCCcEEEEEcCChhhhh
Q 047598 282 LKTAVDGKRFLLVLDDVWNE-DYSLWVDLKAPLLAAAPNSKMIITTRHSHVAS 333 (1112)
Q Consensus 282 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 333 (1112)
+.+.+-.++=++++|+--.. +......+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 55666667778889976431 222233333333322 356888887766543
No 270
>PRK07667 uridine kinase; Provisional
Probab=95.49 E-value=0.018 Score=58.23 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 187 KARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+.|.+.+.. ..+...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~------~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKK------HKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHh------cCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666654 22345899999999999999999998754
No 271
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.48 E-value=0.054 Score=62.05 Aligned_cols=188 Identities=16% Similarity=0.139 Sum_probs=105.3
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
+.++|.+.....|...+... .-..--...|.-|+||||+|+-+++-.--. -| ....+++.=..
T Consensus 16 ~evvGQe~v~~~L~nal~~~-------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~---------~~-~~~ePC~~C~~ 78 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENG-------RIAHAYLFSGPRGVGKTTIARILAKALNCE---------NG-PTAEPCGKCIS 78 (515)
T ss_pred HHhcccHHHHHHHHHHHHhC-------cchhhhhhcCCCCcCchhHHHHHHHHhcCC---------CC-CCCCcchhhhh
Confidence 35699999999999988651 122344568999999999998887643211 00 11111111111
Q ss_pred HHHHHHHhcC--------CCCCCCChHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC
Q 047598 258 SKALLESITR--------KPCHLNTLNEVQVDLKTA-VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH 328 (1112)
Q Consensus 258 ~~~il~~l~~--------~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 328 (1112)
-+.|-..-.. .....++..++.+.+... .++|-=+.|+|.|.-.....|..+..-+-.-...-+.|..|++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe 158 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTE 158 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCC
Confidence 1222221000 001112222222222211 1344558899999877777888887776554455565555554
Q ss_pred h-hhhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch
Q 047598 329 S-HVAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 329 ~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1112)
. .+... .+....|.++.++.++-...+...+-......+ ++....|++..+|..
T Consensus 159 ~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 159 PQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSL 214 (515)
T ss_pred cCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCCh
Confidence 4 44332 334578999999999888888776644333222 233455666666643
No 272
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.47 E-value=0.3 Score=58.34 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=39.6
Q ss_pred CCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 176 TERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
....++|....+.++++.+... .....-|.|+|..|+|||++|+.+++..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~------a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVV------ARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHH------hCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 4467999999999998887652 1223467799999999999999999764
No 273
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.45 E-value=0.16 Score=48.95 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCC-CC-hhhHHHHHhcccC-CCCCcEEEEEcCChhhhhhcC
Q 047598 277 EVQVDLKTAVDGKRFLLVLDDVWN-ED-YSLWVDLKAPLLA-AAPNSKMIITTRHSHVASTMG 336 (1112)
Q Consensus 277 ~~~~~l~~~l~~kr~LlVlDdv~~-~~-~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~~ 336 (1112)
+-...|.+.+-+++-+++-|.--. -+ ...|+- ...|.. +..|..||++|-+.++...+.
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~i-m~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI-MRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHH-HHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 334456777778888999885321 11 234543 333332 446999999999998887764
No 274
>PRK09354 recA recombinase A; Provisional
Probab=95.41 E-value=0.065 Score=58.48 Aligned_cols=86 Identities=22% Similarity=0.176 Sum_probs=56.8
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCChHHH
Q 047598 204 DANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKP-----CHLNTLNEV 278 (1112)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~ 278 (1112)
-+.-+++-|+|.+|+||||||.+++.... ..-..++|++....++.. .+++++... ......++.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~-----~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~ 126 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQ-----KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQA 126 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHH
Confidence 34568999999999999999998876543 224567899988877753 344444321 122344555
Q ss_pred HHHHHHHhC-CCcEEEEEeCCC
Q 047598 279 QVDLKTAVD-GKRFLLVLDDVW 299 (1112)
Q Consensus 279 ~~~l~~~l~-~kr~LlVlDdv~ 299 (1112)
...+...++ +.--+||+|-|-
T Consensus 127 l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 127 LEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHHHHhhcCCCCEEEEeChh
Confidence 555554443 456689999984
No 275
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.11 Score=63.06 Aligned_cols=123 Identities=19% Similarity=0.159 Sum_probs=73.5
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++|.++.+..|-+.+.....+.....+...+.+.|+.|+|||-||+++..-.- +..+..+-+.+++ .
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F-----gse~~~IriDmse------~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF-----GSEENFIRLDMSE------F 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc-----CCccceEEechhh------h
Confidence 3478888888888888765222111113577889999999999999999887431 2333333333332 2
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcE-EEEEeCCCCCChhhHHHHHhccc
Q 047598 258 SKALLESITRKPCHLNTLNEVQVDLKTAVDGKRF-LLVLDDVWNEDYSLWVDLKAPLL 314 (1112)
Q Consensus 258 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~ 314 (1112)
.. +.+.++... . .--.+....|.+.++.++| +|+||||+..+......+...+.
T Consensus 631 ~e-vskligsp~-g-yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 631 QE-VSKLIGSPP-G-YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hh-hhhccCCCc-c-cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 22 223333322 1 1112223366677777776 56689998877766665555543
No 276
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.35 E-value=0.033 Score=54.64 Aligned_cols=80 Identities=18% Similarity=0.278 Sum_probs=44.1
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---CChHHHHHHHHHH
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHL---NTLNEVQVDLKTA 285 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~---~~~~~~~~~l~~~ 285 (1112)
++.|.|.+|+||||+|..+...... ..+++.....++ .+..+.+..........- .....+...+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~--------~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL--------QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC--------CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh
Confidence 6899999999999999999865321 123444444433 344555544433322111 1112233344443
Q ss_pred hCCCcEEEEEeCC
Q 047598 286 VDGKRFLLVLDDV 298 (1112)
Q Consensus 286 l~~kr~LlVlDdv 298 (1112)
..+ .-++++|.+
T Consensus 74 ~~~-~~~VlID~L 85 (170)
T PRK05800 74 AAP-GRCVLVDCL 85 (170)
T ss_pred cCC-CCEEEehhH
Confidence 333 237888987
No 277
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.34 E-value=0.077 Score=59.06 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...++.++|.+|+||||+|..+....
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999987643
No 278
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.34 E-value=0.049 Score=60.18 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=50.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD-VFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1112)
-+++.++|+.|+||||++.++......+ .....+..++... .....+-++...+.++.......+..++...+. .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~---~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR---FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-E 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh---cCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-H
Confidence 4699999999999999999988764322 1123455555432 223445555555666554332333333333333 3
Q ss_pred hCCCcEEEEEeCCC
Q 047598 286 VDGKRFLLVLDDVW 299 (1112)
Q Consensus 286 l~~kr~LlVlDdv~ 299 (1112)
+.++ -+|++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4554 456688874
No 279
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.32 E-value=0.0013 Score=78.42 Aligned_cols=226 Identities=20% Similarity=0.199 Sum_probs=108.5
Q ss_pred CCceeEEEEcCcCCCCC---CCCCCCCCCcceEEecCC-CCceecCccccCCCCcccCcccceeecCCCCcccccccccC
Q 047598 801 FSKMEVLKLENCWNCTS---LPSLGLLSSLRELTIQGL-TKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIK 876 (1112)
Q Consensus 801 l~~L~~L~L~~~~~~~~---l~~l~~l~~L~~L~L~~~-~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 876 (1112)
+++|+.|.+.+|..... .+....+++|+.|++++| ......+..... ....+++|+.|+++.+..+.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~isd~~l--- 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLL--LLSICRKLKSLDLSGCGLVTDIGL--- 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhh--hhhhcCCcCccchhhhhccCchhH---
Confidence 56777777777755443 235566777777777763 222221110000 111245555555555432111111
Q ss_pred CCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccC
Q 047598 877 GNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFP 956 (1112)
Q Consensus 877 ~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~ 956 (1112)
......+|+|+.|.+.+|..+++ ..+-.....+++|++|++++|..++...
T Consensus 262 ----~~l~~~c~~L~~L~l~~c~~lt~-------------------------~gl~~i~~~~~~L~~L~l~~c~~~~d~~ 312 (482)
T KOG1947|consen 262 ----SALASRCPNLETLSLSNCSNLTD-------------------------EGLVSIAERCPSLRELDLSGCHGLTDSG 312 (482)
T ss_pred ----HHHHhhCCCcceEccCCCCccch-------------------------hHHHHHHHhcCcccEEeeecCccchHHH
Confidence 00112245555555555544331 0111223467889999999887763311
Q ss_pred --CC-CCCCCCCeEEEcCCc---cccc------------ccccccCCCCCCcCEEEEcccCCccccccCcccccccCCCC
Q 047598 957 --EE-GFPTNLASLVIGGDV---KMYK------------GLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSS 1018 (1112)
Q Consensus 957 --~~-~~~~~L~~L~l~~~~---~~~~------------~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~s 1018 (1112)
.. ..+++|+.|.+..+. .+.. ......+.+++.|+.+.|..|. . ..
T Consensus 313 l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~---------------~~ 376 (482)
T KOG1947|consen 313 LEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-I---------------SD 376 (482)
T ss_pred HHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-c---------------cC
Confidence 11 235655555544432 1111 1112223344445555544432 0 11
Q ss_pred cc-EEEecCCCCCC-cCC----CCCCCCeEEeecCCCCCcCC--CCCC-CCCccEEEEccCcchHHh
Q 047598 1019 LT-HLTIAGFKKLK-KLS----LMTSLEYLWIKNCPNLASFP--ELGL-PSSLTQLYIDHCPLVKKE 1076 (1112)
Q Consensus 1019 L~-~L~l~~~~~L~-~l~----~l~~L~~L~ls~c~~l~~lp--~~~~-~~~L~~L~l~~c~~l~~~ 1076 (1112)
.. .+.+.+|+.++ ++. ....++.|+++.|...+.-- .... +..+..+++.+|+.+...
T Consensus 377 ~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 377 LGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 11 34556677663 221 23337888888886655432 1111 566777888888766543
No 280
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.24 Score=57.12 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=83.4
Q ss_pred cceecchhhHHHHHHHHhcCCCC-----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+=|.++-+.++.+...-+-.. .-+-...+=|-.+|++|.|||++|+++.+..... | +++..+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n-----F-----lsvkgp- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN-----F-----LSVKGP- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC-----e-----eeccCH-
Confidence 44556777777766554321110 0122456778899999999999999999976533 4 222211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hhhHHHHHhcccCCCCCcE
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED-----------YSLWVDLKAPLLAAAPNSK 321 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~~gs~ 321 (1112)
+ ++...- ......+.+.+++.=+--.++|.||.++... .....++..-+........
T Consensus 503 ---E----L~sk~v-----GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 ---E----LFSKYV-----GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred ---H----HHHHhc-----CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 0 011100 0111222222222223346888888775321 1222333333333333323
Q ss_pred E--EEEcCChhhhhh--cC---CCceeeCCCCChHhHHHHHHHhHhCCC
Q 047598 322 M--IITTRHSHVAST--MG---PIKHYNLKRLLDEDCWSIFIKHAYESR 363 (1112)
Q Consensus 322 i--ivTTR~~~v~~~--~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 363 (1112)
| |-.|..++.... +. -...+.+..-+.+.-.++|+.++-+..
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC
Confidence 3 333433333221 22 345677776677777899999885544
No 281
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.27 E-value=0.12 Score=54.36 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=53.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC-HHHHHHHHHHHhcCCC-------CCCCChHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD-VLSISKALLESITRKP-------CHLNTLNEV 278 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~~-------~~~~~~~~~ 278 (1112)
-+-++|+|..|+||||||+.+++..... +-+.++++-+++... +.++.+.+.+.-.... .+.......
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~----~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA----HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc----CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 3578999999999999999999886533 124567777877654 3444454443211110 111111111
Q ss_pred -----HHHHHHHh---CCCcEEEEEeCC
Q 047598 279 -----QVDLKTAV---DGKRFLLVLDDV 298 (1112)
Q Consensus 279 -----~~~l~~~l---~~kr~LlVlDdv 298 (1112)
.-.+.+++ +++.+|+++||+
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 11234444 389999999998
No 282
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.24 E-value=0.052 Score=58.73 Aligned_cols=85 Identities=22% Similarity=0.196 Sum_probs=55.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCChHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKP-----CHLNTLNEVQ 279 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~ 279 (1112)
+.-+++-|+|.+|+||||||.++...... .-..++|++..+.++.. .+++++... ......++..
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~-----~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l 122 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQK-----AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQAL 122 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHH
Confidence 45679999999999999999887765432 23567788887766543 344444321 1223445555
Q ss_pred HHHHHHhC-CCcEEEEEeCCC
Q 047598 280 VDLKTAVD-GKRFLLVLDDVW 299 (1112)
Q Consensus 280 ~~l~~~l~-~kr~LlVlDdv~ 299 (1112)
..+...++ +.--+||+|.|-
T Consensus 123 ~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 123 EIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHHHhhccCCcEEEEcchh
Confidence 55554443 456689999884
No 283
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.23 E-value=0.21 Score=49.98 Aligned_cols=119 Identities=17% Similarity=0.166 Sum_probs=63.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEE---EeCCCCCHHHH------HHHHHHHhcCCC------CC
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWV---CISDVFDVLSI------SKALLESITRKP------CH 271 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv---~~~~~~~~~~~------~~~il~~l~~~~------~~ 271 (1112)
-.+++|+|..|.|||||++.++...... ...+++ .+.. .+.... ..++++.++... ..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~------~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~ 97 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPS------SGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNE 97 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC------CcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCccc
Confidence 3599999999999999999998764321 122222 1211 111111 112344444321 11
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEEeCCCC-CChhhHHHHHhcccCC-CC-CcEEEEEcCChhhh
Q 047598 272 LNTLNEVQVDLKTAVDGKRFLLVLDDVWN-EDYSLWVDLKAPLLAA-AP-NSKMIITTRHSHVA 332 (1112)
Q Consensus 272 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTTR~~~v~ 332 (1112)
...-+...-.+.+.+-..+-++++|+.-. -+......+...+... .. |..||++|.+....
T Consensus 98 LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11122223345666667788999998743 2223333344433322 12 66788888876654
No 284
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.22 E-value=0.02 Score=65.49 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=40.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 179 AVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++|.++.+++|++.|...... .+...+++.++|++|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~g--l~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQG--LEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHh--cCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 5899999999999998431111 12345799999999999999999998754
No 285
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=2.7 Score=43.61 Aligned_cols=177 Identities=16% Similarity=0.165 Sum_probs=89.3
Q ss_pred ceecchhhHHHHHHHHhcCCC----CCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCH
Q 047598 179 AVYGRDKDKARILKMVLSTDE----KTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDV 254 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~----~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~ 254 (1112)
.+-|.+..++.+.+...-+-. =+......+-|.++|++|.||+.||++|+..... . |.+||..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS----T------FFSvSSS--- 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS----T------FFSVSSS--- 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC----c------eEEeehH---
Confidence 356777777777665432100 0013345788999999999999999999987542 1 2334432
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCC------C-hhhHHHH----Hhccc---CCCCC
Q 047598 255 LSISKALLESITRKPCHLNTLNEVQVDLKTAV-DGKRFLLVLDDVWNE------D-YSLWVDL----KAPLL---AAAPN 319 (1112)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~------~-~~~~~~l----~~~l~---~~~~g 319 (1112)
++...+.+ ..+.+...|.+.- ..|+-+|.+|.++.. . .+.-..+ ..... ....|
T Consensus 201 -----DLvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 201 -----DLVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred -----HHHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 12222221 1223333333322 468899999998631 0 0111111 11121 22345
Q ss_pred cEEEEEcCChhhhhhcC---CCceeeCCCCChHhHH-HHHHHhHhCCCCCCCchhHHHHHHHHHhhcCC
Q 047598 320 SKMIITTRHSHVASTMG---PIKHYNLKRLLDEDCW-SIFIKHAYESRSLKAHQISELFRKKVVGKCGG 384 (1112)
Q Consensus 320 s~iivTTR~~~v~~~~~---~~~~~~l~~L~~~~~~-~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 384 (1112)
--|+-.|..+-+....- -.+.+-+ ||.+..|+ .+|.-+++.....-..+.+ ++++++..|
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~LT~~d~----~eL~~kTeG 333 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVLTEQDF----KELARKTEG 333 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCccccchhhH----HHHHhhcCC
Confidence 55666777765554321 1122222 46666665 4566665433322222333 445555544
No 286
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.16 Score=55.82 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=48.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD--VLSISKALLESITRKPCHLNTLNEVQVDLK 283 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 283 (1112)
..++|+++|.+|+||||++..++..... .. ..+..++.+ .+. ..+-++...+.++.......+...+...+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~----~G-kkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHG----KK-KTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHH----cC-CcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHH
Confidence 3579999999999999999998765431 11 234445543 332 233333444444433222334455555554
Q ss_pred HHhCC-CcEEEEEeCCC
Q 047598 284 TAVDG-KRFLLVLDDVW 299 (1112)
Q Consensus 284 ~~l~~-kr~LlVlDdv~ 299 (1112)
..-.. +.=+|++|-.-
T Consensus 314 ~lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 314 YFKEEARVDYILIDTAG 330 (436)
T ss_pred HHHhccCCCEEEEeCcc
Confidence 43221 23467778664
No 287
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.21 E-value=0.049 Score=54.91 Aligned_cols=56 Identities=25% Similarity=0.259 Sum_probs=37.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC-CCCHHHHHHHHHHHhcCC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD-VFDVLSISKALLESITRK 268 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~ 268 (1112)
+|+.++|+.|+||||.+.+++.....+ -..+..++... .....+-++..++.++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-----~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-----GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-----T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-----cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 699999999999999887777655422 33566666653 234456667777777654
No 288
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.21 Score=59.08 Aligned_cols=134 Identities=16% Similarity=0.080 Sum_probs=77.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKT 284 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 284 (1112)
...+.+-++|++|.|||.||+++++... ..|..+ ... + ++... -..........+..
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~-----~~fi~v-----~~~-~-------l~sk~-----vGesek~ir~~F~~ 330 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESR-----SRFISV-----KGS-E-------LLSKW-----VGESEKNIRELFEK 330 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCC-----CeEEEe-----eCH-H-------Hhccc-----cchHHHHHHHHHHH
Confidence 4556899999999999999999999654 234222 111 1 11110 01122233334444
Q ss_pred HhCCCcEEEEEeCCCCCC-----------hhhHHHHHhcccCCC--CCcEEEEEcCChhhhhhc-----CCCceeeCCCC
Q 047598 285 AVDGKRFLLVLDDVWNED-----------YSLWVDLKAPLLAAA--PNSKMIITTRHSHVASTM-----GPIKHYNLKRL 346 (1112)
Q Consensus 285 ~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~--~gs~iivTTR~~~v~~~~-----~~~~~~~l~~L 346 (1112)
.-+..++.|++|.++... .....++...+.... .+..||-||..+...... .-...+.+.+-
T Consensus 331 A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~p 410 (494)
T COG0464 331 ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLP 410 (494)
T ss_pred HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCC
Confidence 556789999999996411 022333343343222 333455566555443321 22457888999
Q ss_pred ChHhHHHHHHHhHhC
Q 047598 347 LDEDCWSIFIKHAYE 361 (1112)
Q Consensus 347 ~~~~~~~Lf~~~~~~ 361 (1112)
+.++..+.|..+...
T Consensus 411 d~~~r~~i~~~~~~~ 425 (494)
T COG0464 411 DLEERLEIFKIHLRD 425 (494)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999988753
No 289
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.05 Score=57.39 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=48.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
..=+.++|.+|+|||.||.++.++.. + ..+ .+.++++ .++..++...... .....++.+.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~---~g~-sv~f~~~------~el~~~Lk~~~~~--------~~~~~~l~~~l 165 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-K---AGI-SVLFITA------PDLLSKLKAAFDE--------GRLEEKLLREL 165 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-H---cCC-eEEEEEH------HHHHHHHHHHHhc--------CchHHHHHHHh
Confidence 44688999999999999999999875 3 223 3445544 3455555544432 11122222222
Q ss_pred CCCcEEEEEeCCCCCChhhHH
Q 047598 287 DGKRFLLVLDDVWNEDYSLWV 307 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~~~~ 307 (1112)
. +-=||||||+-......|.
T Consensus 166 ~-~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 166 K-KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred h-cCCEEEEecccCccCCHHH
Confidence 2 2348999999765545554
No 290
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.17 E-value=0.018 Score=53.60 Aligned_cols=26 Identities=38% Similarity=0.400 Sum_probs=22.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSL 233 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~ 233 (1112)
--|+|.|++|+||||+++.+.+..+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 46899999999999999999877654
No 291
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.17 E-value=0.13 Score=56.69 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=42.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcccccccc-CCCCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK-DFKFDIKAWVCISDVFDVLSISKALLESIT 266 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 266 (1112)
....++-|+|.+|+|||++|.+++-....... +..=..++|++....++...+. ++++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 45679999999999999999988765432100 0112478999999988876654 3444443
No 292
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.17 E-value=0.017 Score=58.46 Aligned_cols=109 Identities=19% Similarity=0.124 Sum_probs=54.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH-
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA- 285 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~- 285 (1112)
-+++.|.|.+|.||||+++.+....... + ..++++ ..... ....+.+..+.. ..++..........
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~---g--~~v~~~-apT~~----Aa~~L~~~~~~~---a~Ti~~~l~~~~~~~ 84 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAA---G--KRVIGL-APTNK----AAKELREKTGIE---AQTIHSFLYRIPNGD 84 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHT---T----EEEE-ESSHH----HHHHHHHHHTS----EEEHHHHTTEECCEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhC---C--CeEEEE-CCcHH----HHHHHHHhhCcc---hhhHHHHHhcCCccc
Confidence 3588899999999999999887655432 1 223333 22221 222233332211 11111110000000
Q ss_pred h-----CCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChh
Q 047598 286 V-----DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSH 330 (1112)
Q Consensus 286 l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 330 (1112)
. ..++-+||+|++...+...+..+...... .|+|+|+.=-..+
T Consensus 85 ~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 85 DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 0 12345999999987776677777665544 4778887665443
No 293
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.16 E-value=0.2 Score=56.97 Aligned_cols=88 Identities=18% Similarity=0.111 Sum_probs=47.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC-CCHHHHHHHHHHHhcCCCCC---CCChHHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV-FDVLSISKALLESITRKPCH---LNTLNEVQV 280 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~---~~~~~~~~~ 280 (1112)
....+|.++|.+|+||||+|..++...... .+ .++-|++... ....+.++.+.++++..... ..+......
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~----g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~ 167 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK----GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAK 167 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc----CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHH
Confidence 356899999999999999999988765422 22 3334444321 12234455556665543211 122222222
Q ss_pred HHHHHhCCCcEEEEEeCC
Q 047598 281 DLKTAVDGKRFLLVLDDV 298 (1112)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv 298 (1112)
...+.+.+. -+||+|..
T Consensus 168 ~al~~~~~~-DvVIIDTA 184 (437)
T PRK00771 168 EGLEKFKKA-DVIIVDTA 184 (437)
T ss_pred HHHHHhhcC-CEEEEECC
Confidence 222233333 46777776
No 294
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.039 Score=51.52 Aligned_cols=44 Identities=34% Similarity=0.465 Sum_probs=33.7
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCC
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRK 268 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~ 268 (1112)
+|.|-|.+|+||||+|+.+.+..... | | +.-.+++++++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-----~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-----L-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-----e-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999999876543 1 1 2235788888877654
No 295
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.09 E-value=0.077 Score=54.75 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 296
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.09 E-value=0.13 Score=53.97 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=53.5
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC--------------
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPC-------------- 270 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-------------- 270 (1112)
..-.++.|+|.+|+|||++|.++..... ..-..++|++..+.+ .++.+.+ ++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~-----~~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~ 94 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGAL-----KQGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYLRIFPLN 94 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHH-----hCCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCceEEecc
Confidence 4567999999999999999999865432 123468888887653 3444432 23321110
Q ss_pred ------CCCChHHHHHHHHHHhCC-CcEEEEEeCCC
Q 047598 271 ------HLNTLNEVQVDLKTAVDG-KRFLLVLDDVW 299 (1112)
Q Consensus 271 ------~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 299 (1112)
.....+.....+...+.. +.-++|+|.+-
T Consensus 95 ~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 95 TEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 012234555666666643 55589999874
No 297
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.07 E-value=0.049 Score=54.54 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=44.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcC--CCCCCCChHHHHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITR--KPCHLNTLNEVQVDL 282 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~--~~~~~~~~~~~~~~l 282 (1112)
.++.+|+|.|.+|+||||+|+.++..... .+ +.-++...-+. ..-.....+.... ..+...+.+-..+.|
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~-----~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L 77 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV-----EK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHL 77 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCc-----Cc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHH
Confidence 45789999999999999999999976541 11 11122111111 0001111111111 113445667777788
Q ss_pred HHHhCCCc
Q 047598 283 KTAVDGKR 290 (1112)
Q Consensus 283 ~~~l~~kr 290 (1112)
...+++++
T Consensus 78 ~~L~~g~~ 85 (218)
T COG0572 78 KDLKQGKP 85 (218)
T ss_pred HHHHcCCc
Confidence 88888877
No 298
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.07 E-value=0.11 Score=56.96 Aligned_cols=62 Identities=18% Similarity=0.094 Sum_probs=43.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLSISKALLESITR 267 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 267 (1112)
..-.++-|+|.+|+|||+|+.+++-...... .++.-..++|++....|...++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4567899999999999999988764332110 012235789999999998877644 5666554
No 299
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.06 E-value=0.11 Score=56.62 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=41.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLSISKALLESIT 266 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 266 (1112)
....++.|+|.+|+|||||+..++....... .++.-..++|++....+...++ .++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 4568999999999999999998875322210 0112246799998888777653 44455543
No 300
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.04 E-value=0.52 Score=49.29 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=69.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
+.+.++|+.|+|||+-++.+++... ...-+..+..+....+...+........ ..........+...++
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~p---------~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~ 163 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSNP---------NALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLR 163 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccCc---------cceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHc
Confidence 3889999999999999999987642 2233456667777777777776665543 2345556666777778
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHhcccC
Q 047598 288 GKRFLLVLDDVWNEDYSLWVDLKAPLLA 315 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 315 (1112)
+..-+|+.|+...-....++.+......
T Consensus 164 ~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 164 DTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred cCcceeeeehhhccChHHHHHHHHHHHh
Confidence 8899999999877666777777655433
No 301
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.033 Score=64.56 Aligned_cols=166 Identities=21% Similarity=0.248 Sum_probs=90.1
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
+.+.+|.++.+++|++.|.-..-. +.-.-.++++||++|+|||.|++.+++-.. ..| +-++++...|..+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~--~~~kGpILcLVGPPGVGKTSLgkSIA~al~-----Rkf---vR~sLGGvrDEAE 391 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLT--KKLKGPILCLVGPPGVGKTSLGKSIAKALG-----RKF---VRISLGGVRDEAE 391 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHh--ccCCCcEEEEECCCCCCchhHHHHHHHHhC-----CCE---EEEecCccccHHH
Confidence 456899999999999988531110 223347999999999999999999998654 334 2345555555443
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh----hhHHHHHhcccCCC-------------CC
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDY----SLWVDLKAPLLAAA-------------PN 319 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~-------------~g 319 (1112)
+-.- .+.. -..-.....+.+++ .+.+.=+++||.++.... +--..+...|.+.. -=
T Consensus 392 IRGH-----RRTY-IGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 392 IRGH-----RRTY-IGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred hccc-----cccc-cccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 3110 0000 01112223333333 245677899999864221 00011111111100 01
Q ss_pred cEE-EEEcCCh-h-hh-hhcCCCceeeCCCCChHhHHHHHHHhH
Q 047598 320 SKM-IITTRHS-H-VA-STMGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 320 s~i-ivTTR~~-~-v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
|.| -|||-+. + +. ..+....++++.+-+++|=.++-+++.
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 343 3444332 2 21 223345678888888888777766654
No 302
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.99 E-value=0.57 Score=50.62 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=32.6
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
+.++=..+....++.++.. .+-|.|.|.+|+||||+|+.++....
T Consensus 45 ~~y~f~~~~~~~vl~~l~~----------~~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAY----------DRRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred CCccCCHHHHHHHHHHHhc----------CCcEEEEeCCCChHHHHHHHHHHHHC
Confidence 3444444555667777743 23589999999999999999988653
No 303
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.99 E-value=0.09 Score=50.38 Aligned_cols=117 Identities=20% Similarity=0.083 Sum_probs=59.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC---CCCHHHHHHHHHHHh-----cCCC--CCCCChH-
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD---VFDVLSISKALLESI-----TRKP--CHLNTLN- 276 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~il~~l-----~~~~--~~~~~~~- 276 (1112)
.+|-|++..|.||||+|....-+.. ++-..+.++.+-. ......+++.+ ..+ +... ......+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~-----~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL-----GHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHH
Confidence 4788888899999999966554432 1112233333222 22333333322 000 0000 0011111
Q ss_pred -----HHHHHHHHHhCC-CcEEEEEeCCCCC---ChhhHHHHHhcccCCCCCcEEEEEcCChh
Q 047598 277 -----EVQVDLKTAVDG-KRFLLVLDDVWNE---DYSLWVDLKAPLLAAAPNSKMIITTRHSH 330 (1112)
Q Consensus 277 -----~~~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 330 (1112)
+.....++.+.. .-=|+|||++-.. .....+++...+.....+.-||+|.|+..
T Consensus 77 ~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 77 IAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 112223444444 4459999998432 22345566666666666779999999853
No 304
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.11 Score=60.08 Aligned_cols=73 Identities=25% Similarity=0.194 Sum_probs=48.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF--DVLSISKALLESITRKPCHLNTLNEVQVDLK 283 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 283 (1112)
...-|.|.|..|+|||+||+++++... + ...-.+..|+++.-. ....+++.+ ...+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k---~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-K---DLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-c---ccceEEEEEechhccchhHHHHHHHH-----------------HHHHH
Confidence 345788999999999999999999875 3 334445566665432 222222222 12334
Q ss_pred HHhCCCcEEEEEeCCC
Q 047598 284 TAVDGKRFLLVLDDVW 299 (1112)
Q Consensus 284 ~~l~~kr~LlVlDdv~ 299 (1112)
..+...+-+|||||++
T Consensus 489 e~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLD 504 (952)
T ss_pred HHHhhCCcEEEEcchh
Confidence 4556778999999996
No 305
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.96 E-value=0.23 Score=60.28 Aligned_cols=161 Identities=16% Similarity=0.084 Sum_probs=82.6
Q ss_pred cceecchhhHHHHHHHHhcCCCC----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
..+.|.+..++++.+.+....+. ..+..-.+-|.|+|++|.|||++|+.+.+..... | +.++.++
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~-----f---~~is~~~--- 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP-----F---FTISGSD--- 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-----E---EEEehHH---
Confidence 35667666666555443211100 0001112238899999999999999998865422 2 1222211
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhhHHHHHhc----ccCC--C
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED----------YSLWVDLKAP----LLAA--A 317 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l~~~----l~~~--~ 317 (1112)
+.. ... ..........+...-...+++|++|+++... ...+...... +... .
T Consensus 221 ---~~~----~~~-----g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~ 288 (644)
T PRK10733 221 ---FVE----MFV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 288 (644)
T ss_pred ---hHH----hhh-----cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence 110 000 0111222233333334568899999986421 1122222222 2221 2
Q ss_pred CCcEEEEEcCChhhhhhc-----CCCceeeCCCCChHhHHHHHHHhHhC
Q 047598 318 PNSKMIITTRHSHVASTM-----GPIKHYNLKRLLDEDCWSIFIKHAYE 361 (1112)
Q Consensus 318 ~gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~ 361 (1112)
.+.-+|.||..++..... .-...+.+...+.++-.+++..+...
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 344566688766543321 12357788888888888888877643
No 306
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.19 Score=56.11 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=39.1
Q ss_pred cceecchh---hHHHHHHHHhcCCCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhcccccc
Q 047598 178 RAVYGRDK---DKARILKMVLSTDEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLN 234 (1112)
Q Consensus 178 ~~~vGr~~---~~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 234 (1112)
.++-|.|+ |+++|++.|..+..= .-++.=.+=|-++|++|.|||-||++|+-...+-
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC
Confidence 45667765 677788888653210 1122334567899999999999999999876543
No 307
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.95 E-value=0.093 Score=57.95 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=36.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 179 AVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.++|+...+.++.+.+... .....-|.|+|-.|+||+++|+.++..
T Consensus 7 ~liG~S~~~~~~~~~i~~~------a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRL------APLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccEECCHHHHHHHHHHHHH------hCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 5889999999988887652 122346889999999999999999864
No 308
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.93 E-value=0.27 Score=55.00 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=52.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCH--HHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDV--LSISKALLESITRKPCHLNTLNEVQVDLK 283 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 283 (1112)
..++|.++|..|+||||.+..++........ ..-..+.-+++. .+.. ..-++...+.++.+.......+.+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~-~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSD-DKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhc-cCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH
Confidence 3579999999999999999888765432200 011244455554 3332 22344555555544333344455544444
Q ss_pred HHhCCCcEEEEEeCCCC
Q 047598 284 TAVDGKRFLLVLDDVWN 300 (1112)
Q Consensus 284 ~~l~~kr~LlVlDdv~~ 300 (1112)
+. .+.-+|++|-.-.
T Consensus 251 ~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 251 QS--KDFDLVLVDTIGK 265 (388)
T ss_pred Hh--CCCCEEEEcCCCC
Confidence 43 3456888898743
No 309
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.92 E-value=0.09 Score=51.49 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=45.1
Q ss_pred EEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC-
Q 047598 210 IPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDG- 288 (1112)
Q Consensus 210 v~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~- 288 (1112)
+.|.|.+|+|||++|.++.... ...++++.-.+.++.+ ..+.|.......... ....+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~--------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~-w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL--------GGPVTYIATAEAFDDE-MAERIARHRKRRPAH-WRTIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc--------CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCC-ceEeecHHHHHHHHHhc
Confidence 6789999999999999987541 2356677777777653 444444433222211 1111222233333321
Q ss_pred -CcEEEEEeCC
Q 047598 289 -KRFLLVLDDV 298 (1112)
Q Consensus 289 -kr~LlVlDdv 298 (1112)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 2337999986
No 310
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.90 E-value=0.14 Score=54.42 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=65.9
Q ss_pred hHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHh
Q 047598 186 DKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESI 265 (1112)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 265 (1112)
..+.++..+.. .....-++|+|..|.|||||.+.+....... ...+++.- ......+...++....
T Consensus 97 ~~~~~l~~l~~-------~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~------~G~i~~~g-~~v~~~d~~~ei~~~~ 162 (270)
T TIGR02858 97 AADKLLPYLVR-------NNRVLNTLIISPPQCGKTTLLRDLARILSTG------ISQLGLRG-KKVGIVDERSEIAGCV 162 (270)
T ss_pred cHHHHHHHHHh-------CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC------CceEEECC-EEeecchhHHHHHHHh
Confidence 34555555543 1335789999999999999999999765422 11222210 0000001112232222
Q ss_pred cCCC-C------CC-CChHHHHHHHHHHh-CCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhhhh
Q 047598 266 TRKP-C------HL-NTLNEVQVDLKTAV-DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHVAS 333 (1112)
Q Consensus 266 ~~~~-~------~~-~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 333 (1112)
..-. . +. ..... ...+...+ ...+=++++|.+-. .+.+..+...+. .|..||+||-+..+..
T Consensus 163 ~~~~q~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 163 NGVPQHDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 1111 0 00 11111 11222222 24688999999843 344555555442 4778999998766643
No 311
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.84 E-value=0.14 Score=63.15 Aligned_cols=135 Identities=18% Similarity=0.133 Sum_probs=73.1
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++|+...+..+.+.+... .....-|.|+|..|+|||++|+.+++..... -...+.+.+..... ..+
T Consensus 376 ~~liG~S~~~~~~~~~~~~~------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~-----~~~~v~i~c~~~~~-~~~ 443 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMV------AQSDSTVLILGETGTGKELIARAIHNLSGRN-----NRRMVKMNCAAMPA-GLL 443 (686)
T ss_pred cceeecCHHHHHHHHHHHHH------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-----CCCeEEEecccCCh-hHh
Confidence 46899999999887777541 1223478899999999999999998764311 11233444443221 111
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCC-----------CCcEEEEEc
Q 047598 258 SKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAA-----------PNSKMIITT 326 (1112)
Q Consensus 258 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTT 326 (1112)
...+.......... ........+. ....=.|+||+|..-.......+...+.... .+.|||.||
T Consensus 444 ~~~lfg~~~~~~~g--~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t 518 (686)
T PRK15429 444 ESDLFGHERGAFTG--ASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 518 (686)
T ss_pred hhhhcCcccccccc--cccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeC
Confidence 11221111110000 0011111221 1223569999998766555556655543221 245888888
Q ss_pred CCh
Q 047598 327 RHS 329 (1112)
Q Consensus 327 R~~ 329 (1112)
...
T Consensus 519 ~~~ 521 (686)
T PRK15429 519 NRD 521 (686)
T ss_pred CCC
Confidence 653
No 312
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.072 Score=63.68 Aligned_cols=159 Identities=19% Similarity=0.138 Sum_probs=85.4
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-cCC-CCceeEEEEeCCCCCHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDF-KFDIKAWVCISDVFDVL 255 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~-~F~~~~wv~~~~~~~~~ 255 (1112)
..++||++|++++++.|.. .. .+.. .++|.+|+|||++|.-++....... +.. ....++-. ++
T Consensus 170 DPvIGRd~EI~r~iqIL~R-R~-----KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL------D~- 234 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSR-RT-----KNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL------DL- 234 (786)
T ss_pred CCCcChHHHHHHHHHHHhc-cC-----CCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe------cH-
Confidence 3588999999999999976 21 2222 4679999999999877666542110 000 01111111 11
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC-CCcEEEEEeCCCCCC--------hhhHHHHHhcccCCCCCcEEEEEc
Q 047598 256 SISKALLESITRKPCHLNTLNEVQVDLKTAVD-GKRFLLVLDDVWNED--------YSLWVDLKAPLLAAAPNSKMIITT 326 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTT 326 (1112)
..-..+. .-..+.++....+.+.++ .++..+++|.+...- .-+-..+..|....+.--.|=.||
T Consensus 235 ------g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT 307 (786)
T COG0542 235 ------GSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATT 307 (786)
T ss_pred ------HHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEecc
Confidence 1111111 122355555555544443 458999999985310 012233444433333333455555
Q ss_pred CChhh------hhhcCCCceeeCCCCChHhHHHHHHHh
Q 047598 327 RHSHV------ASTMGPIKHYNLKRLLDEDCWSIFIKH 358 (1112)
Q Consensus 327 R~~~v------~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 358 (1112)
-++-- +........+.+...+.+++..++.-.
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 44311 111123467889999999999888643
No 313
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.82 E-value=0.081 Score=56.27 Aligned_cols=37 Identities=30% Similarity=0.506 Sum_probs=27.9
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHH
Q 047598 182 GRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLARE 226 (1112)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~ 226 (1112)
+|..+-.--+++|+. +.+..|.+.|.+|.|||.||-+
T Consensus 228 prn~eQ~~ALdlLld--------~dI~lV~L~G~AGtGKTlLALa 264 (436)
T COG1875 228 PRNAEQRVALDLLLD--------DDIDLVSLGGKAGTGKTLLALA 264 (436)
T ss_pred cccHHHHHHHHHhcC--------CCCCeEEeeccCCccHhHHHHH
Confidence 455555555666754 4688999999999999998844
No 314
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.80 E-value=0.047 Score=55.46 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=56.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHH-HHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVL-SISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
.+|.|+|..|+||||++..+..... ......++. +.++.... .-...++.+. . ...+.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~-----~~~~~~i~t-~e~~~E~~~~~~~~~i~q~---~-vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN-----KNKTHHILT-IEDPIEFVHESKRSLINQR---E-VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh-----hcCCcEEEE-EcCCccccccCccceeeec---c-cCCCccCHHHHHHHHh
Confidence 3789999999999999998776542 122223332 22221100 0000011110 0 0111223445567777
Q ss_pred CCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhhh
Q 047598 287 DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHVA 332 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~ 332 (1112)
....=.|++|.+.+. +.+..+... ...|-.++.|+-..++.
T Consensus 72 r~~pd~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQDPDVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCCcCEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 767779999999643 333333322 22455677777655544
No 315
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.79 E-value=0.046 Score=54.00 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998753
No 316
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.77 E-value=0.021 Score=58.02 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=44.7
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCc---eeEEEEeCCCCCHHHHHHHHHHHhc----CCCCCCCChHHHHHH
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFD---IKAWVCISDVFDVLSISKALLESIT----RKPCHLNTLNEVQVD 281 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~---~~~wv~~~~~~~~~~~~~~il~~l~----~~~~~~~~~~~~~~~ 281 (1112)
||+|.|.+|+||||+|+.+....... ... ....++............. -.... ...+...+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~----~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~ 75 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR----GIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKED 75 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC----TTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc----CcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHH
Confidence 79999999999999999998765422 121 1233333332222222111 11111 111234566777777
Q ss_pred HHHHhCCCcEEEE
Q 047598 282 LKTAVDGKRFLLV 294 (1112)
Q Consensus 282 l~~~l~~kr~LlV 294 (1112)
+....+++..-+-
T Consensus 76 l~~L~~g~~i~~p 88 (194)
T PF00485_consen 76 LKALKNGGSIEIP 88 (194)
T ss_dssp HHHHHTTSCEEEE
T ss_pred HHHHhCCCccccc
Confidence 7776677665443
No 317
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.77 E-value=0.12 Score=54.48 Aligned_cols=91 Identities=24% Similarity=0.170 Sum_probs=58.4
Q ss_pred CCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHH-hcC----CCCCCCChHH
Q 047598 203 DDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLES-ITR----KPCHLNTLNE 277 (1112)
Q Consensus 203 ~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~-l~~----~~~~~~~~~~ 277 (1112)
+-+.-+++=|+|+.|+||||+|.+++-..+.. -..++|++....++...+ +++... +.. .........+
T Consensus 56 Gl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~-----g~~a~fIDtE~~l~p~r~-~~l~~~~~d~l~v~~~~~~e~q~~ 129 (279)
T COG0468 56 GLPRGRITEIYGPESSGKTTLALQLVANAQKP-----GGKAAFIDTEHALDPERA-KQLGVDLLDNLLVSQPDTGEQQLE 129 (279)
T ss_pred CcccceEEEEecCCCcchhhHHHHHHHHhhcC-----CCeEEEEeCCCCCCHHHH-HHHHHhhhcceeEecCCCHHHHHH
Confidence 34567899999999999999998877665432 348899999999988654 344444 221 1111222233
Q ss_pred HHHHHHHHhCCCcEEEEEeCCC
Q 047598 278 VQVDLKTAVDGKRFLLVLDDVW 299 (1112)
Q Consensus 278 ~~~~l~~~l~~kr~LlVlDdv~ 299 (1112)
....+......+--|+|+|.|-
T Consensus 130 i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 130 IAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHhccCCCCEEEEecCc
Confidence 3344444444445688899883
No 318
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.77 E-value=0.022 Score=46.22 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998763
No 319
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.75 E-value=0.065 Score=57.89 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=25.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSL 233 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 233 (1112)
...+.++|||++|.|||.+|+++++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 56789999999999999999999998653
No 320
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.74 E-value=0.02 Score=34.25 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=18.7
Q ss_pred cccEEEecccccccccccccCC
Q 047598 593 RLRVLSLQRYYIGELLVSFEDL 614 (1112)
Q Consensus 593 ~L~~L~L~~~~~~~lp~~~~~l 614 (1112)
+|++|||++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887754
No 321
>PRK14974 cell division protein FtsY; Provisional
Probab=94.72 E-value=0.23 Score=54.36 Aligned_cols=89 Identities=18% Similarity=0.077 Sum_probs=47.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC--HHHHHHHHHHHhcCCCC---CCCChHH-HH
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD--VLSISKALLESITRKPC---HLNTLNE-VQ 279 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~---~~~~~~~-~~ 279 (1112)
+..++.++|++|+||||++..++..... ..+ .++.+.. +.+. ..+.++...+.++.... ...+... ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~----~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~ 212 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK----NGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAY 212 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH----cCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHH
Confidence 4689999999999999988887765432 223 2333432 3332 22334555666554321 1122222 22
Q ss_pred HHHHHHhCCCcEEEEEeCCCC
Q 047598 280 VDLKTAVDGKRFLLVLDDVWN 300 (1112)
Q Consensus 280 ~~l~~~l~~kr~LlVlDdv~~ 300 (1112)
..+...-....-+|++|-.-.
T Consensus 213 ~ai~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 213 DAIEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHHHhCCCCEEEEECCCc
Confidence 333322222233888998744
No 322
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.69 E-value=0.31 Score=52.60 Aligned_cols=53 Identities=25% Similarity=0.191 Sum_probs=36.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESI 265 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 265 (1112)
-.++.|.|.+|+||||++.++...... .+-..++|+++... ..++.+.+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~----~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLIT----QHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH----hcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 458899999999999999988765421 11346788888664 345555555543
No 323
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.69 E-value=0.078 Score=54.74 Aligned_cols=124 Identities=17% Similarity=0.108 Sum_probs=71.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEE-----EeCCCCCHHHHHHHHHHHhcCCCC------CCCCh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWV-----CISDVFDVLSISKALLESITRKPC------HLNTL 275 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv-----~~~~~~~~~~~~~~il~~l~~~~~------~~~~~ 275 (1112)
-.+++|||..|.||||+|+.+..=.... ...+.|- ..+ .....+...++++.++.... ..-+-
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt-----~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT-----SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC-----CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 4589999999999999999998754422 2222221 111 22233455666776664331 11122
Q ss_pred HHHH-HHHHHHhCCCcEEEEEeCCCCCC-hhhHHHHHhcccC--CCCCcEEEEEcCChhhhhhcC
Q 047598 276 NEVQ-VDLKTAVDGKRFLLVLDDVWNED-YSLWVDLKAPLLA--AAPNSKMIITTRHSHVASTMG 336 (1112)
Q Consensus 276 ~~~~-~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~~~ 336 (1112)
.+.+ -.+.+.|.-++-+||.|..-+.- ...-.++...+.+ ...|-..+..|-+-.++..+.
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 2222 24677888899999999864321 1111222222221 234667888888888777655
No 324
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.65 E-value=0.022 Score=53.31 Aligned_cols=21 Identities=48% Similarity=0.745 Sum_probs=19.5
Q ss_pred EEEEccCCCcHHHHHHHHhcc
Q 047598 210 IPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 210 v~I~G~gGiGKTtLa~~v~~~ 230 (1112)
|+|.|.+|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 325
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.63 E-value=0.03 Score=57.88 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEccCCCcHHHHHHHHhccc
Q 047598 210 IPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 210 v~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
|.|+|++|+||||+|+.+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998764
No 326
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.63 E-value=0.00096 Score=65.38 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=73.8
Q ss_pred cccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEE
Q 047598 588 LPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHL 667 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 667 (1112)
+..++...+||++.|.+..+-..|+.++.|..|+++.|.+..+|+.++.+..+..+++..| .....|.+++.++.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 4556788889999888877777788888889999999999999999998888888988876 788899999999999999
Q ss_pred eecCCCcc
Q 047598 668 DIKGANLL 675 (1112)
Q Consensus 668 ~L~~~~~l 675 (1112)
++.++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88887643
No 327
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=0.0028 Score=64.04 Aligned_cols=105 Identities=23% Similarity=0.276 Sum_probs=82.5
Q ss_pred cCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCc--cccCCccccEE
Q 047598 590 KFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPS--KMRNLINLHHL 667 (1112)
Q Consensus 590 ~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L 667 (1112)
.+.+.+.|++.+|.++.+. ...+|+.|++|.||-|.|+.+ +.+..+++|+.|.|+.| .+..+.+ .+.+|++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 3567888999999887763 356899999999999999998 56889999999999998 6766654 36789999999
Q ss_pred eecCCCccccCCCC-----CCCCCCCCccCeeeec
Q 047598 668 DIKGANLLREMPLG-----MKELKNLRTLSNFIVG 697 (1112)
Q Consensus 668 ~L~~~~~l~~lp~~-----i~~l~~L~~L~~~~~~ 697 (1112)
-|..|.....-+.. +.-|++|+.|+...+.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 99887644444432 5678888888866554
No 328
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.62 E-value=0.2 Score=55.13 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=43.0
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLSISKALLESITR 267 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 267 (1112)
....++-|+|.+|+|||++|..++-...... .++.-..++|++....|...++ .++++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 4567999999999999999988775432110 0012237899999999888765 455666543
No 329
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.62 E-value=0.17 Score=50.27 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|.|||||.+.+....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 489999999999999999998754
No 330
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.62 E-value=0.085 Score=60.32 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=45.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCH--HHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDV--LSISKALLESITRKPCHLNTLNEVQVDLK 283 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 283 (1112)
..++++|+|.+|+||||++..+....... .....+..++... +.. .+.++...+.++.......+...+...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~---~~gkkVaLIdtDt-yRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ---HAPRDVALVTTDT-QRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh---cCCCceEEEeccc-ccccHHHHHHHhhcccCceeEecCcHHHHHHHHH
Confidence 35799999999999999998887654322 1123344454432 221 22222222333322222233334444443
Q ss_pred HHhCCCcEEEEEeCCC
Q 047598 284 TAVDGKRFLLVLDDVW 299 (1112)
Q Consensus 284 ~~l~~kr~LlVlDdv~ 299 (1112)
+ +.+ .-+|++|..-
T Consensus 425 ~-l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 R-LRD-YKLVLIDTAG 438 (559)
T ss_pred H-hcc-CCEEEecCCC
Confidence 3 333 4577888764
No 331
>PTZ00301 uridine kinase; Provisional
Probab=94.61 E-value=0.026 Score=57.47 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 5799999999999999999887654
No 332
>PRK06547 hypothetical protein; Provisional
Probab=94.61 E-value=0.047 Score=53.73 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=23.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
....+|+|.|.+|+||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998764
No 333
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.60 E-value=0.053 Score=53.46 Aligned_cols=26 Identities=42% Similarity=0.532 Sum_probs=23.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
..+|+|-||-|+||||||+.+.+...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998865
No 334
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.59 E-value=0.3 Score=46.17 Aligned_cols=85 Identities=21% Similarity=0.201 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHhcCCCC------CCCChHHHHHHHHHHhCCCcEEEEEeCC----CCCChhhHHHHHhcccCCCCCc
Q 047598 251 VFDVLSISKALLESITRKPC------HLNTLNEVQVDLKTAVDGKRFLLVLDDV----WNEDYSLWVDLKAPLLAAAPNS 320 (1112)
Q Consensus 251 ~~~~~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~l~~~l~~~~~gs 320 (1112)
..+.....+..+++++.... ....-++-.-.|.+.+...+-+++-|.- +...-+...++...+ ....|+
T Consensus 120 ~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~ 198 (228)
T COG4181 120 SADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGT 198 (228)
T ss_pred cccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCc
Confidence 34556667788888775431 2233344455677888888888888854 222223333444333 234788
Q ss_pred EEEEEcCChhhhhhcC
Q 047598 321 KMIITTRHSHVASTMG 336 (1112)
Q Consensus 321 ~iivTTR~~~v~~~~~ 336 (1112)
..++.|-++.+|..|.
T Consensus 199 TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 199 TLVLVTHDPQLAARCD 214 (228)
T ss_pred eEEEEeCCHHHHHhhh
Confidence 9999999999998875
No 335
>PRK05439 pantothenate kinase; Provisional
Probab=94.58 E-value=0.18 Score=54.37 Aligned_cols=82 Identities=17% Similarity=0.030 Sum_probs=43.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESIT-RKPCHLNTLNEVQVDLK 283 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~-~~~~~~~~~~~~~~~l~ 283 (1112)
+..-+|+|.|.+|+||||+|+.+..-.... .....+.-++...-+...+.+..- ..+. ...+..-+.+.+...+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~---~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRW---PEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhh---CCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHH
Confidence 457899999999999999999887643211 011233445554443332222210 0011 11123445556666666
Q ss_pred HHhCCCc
Q 047598 284 TAVDGKR 290 (1112)
Q Consensus 284 ~~l~~kr 290 (1112)
....++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 5555554
No 336
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.58 E-value=0.24 Score=54.58 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=42.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLSISKALLESIT 266 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 266 (1112)
..-.++-|+|.+|+|||+++.+++-...... .+..-..++||+....++...+. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 4467999999999999999998876543210 00112379999999988877654 4455444
No 337
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.85 Score=54.53 Aligned_cols=182 Identities=14% Similarity=0.141 Sum_probs=99.5
Q ss_pred cceecchhhHHHH---HHHHhcCCC-CCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARI---LKMVLSTDE-KTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l---~~~L~~~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
.++.|.++.+++| ++.|..+.. ..-+..-.+=+-++|++|.|||-||++++-...+- |++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP----------F~svSGS-- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------FFSVSGS-- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc----------eeeechH--
Confidence 4577887765555 445543210 00022335567899999999999999999876543 3444432
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHH-HHHhCCCcEEEEEeCCCCCC---------------hhhHHHHHhcccCCC
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVDL-KTAVDGKRFLLVLDDVWNED---------------YSLWVDLKAPLLAAA 317 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~ 317 (1112)
+.++.+.... ......+ ...=...+++|.+|+++... .....++...+....
T Consensus 379 ------EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 ------EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ------HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 1112211110 1112222 22223567888888875311 122333433333333
Q ss_pred CCc--EEEEEcCChhhhhhc-----CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH
Q 047598 318 PNS--KMIITTRHSHVASTM-----GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL 387 (1112)
Q Consensus 318 ~gs--~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 387 (1112)
.+. -+|-+|...++.... .-.+.+.+..-+...-.++|..++-..... .+..++++ |+...-|.+=
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~g 519 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSG 519 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcH
Confidence 333 344466666654321 234678888888889999999988554432 23334455 7777777663
No 338
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.52 E-value=0.12 Score=55.10 Aligned_cols=89 Identities=16% Similarity=0.060 Sum_probs=48.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHH--HHHHHHHHHhcCCC---CCCCCh-HHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVL--SISKALLESITRKP---CHLNTL-NEV 278 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~il~~l~~~~---~~~~~~-~~~ 278 (1112)
...+++.++|.+|+||||++..++..... .-..+.+++.. .+... +-++...+..+... ....+. ...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~-----~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~ 143 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKK-----QGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVA 143 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh-----cCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHH
Confidence 34689999999999999999888765532 12355566554 33332 23333444444221 111122 222
Q ss_pred HHHHHHHhCCCcEEEEEeCCC
Q 047598 279 QVDLKTAVDGKRFLLVLDDVW 299 (1112)
Q Consensus 279 ~~~l~~~l~~kr~LlVlDdv~ 299 (1112)
...+.....+..-++++|-.-
T Consensus 144 ~~~l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 144 FDAIQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCC
Confidence 233444444445578888763
No 339
>PRK08233 hypothetical protein; Provisional
Probab=94.50 E-value=0.031 Score=56.24 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4699999999999999999998754
No 340
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.49 E-value=0.034 Score=57.15 Aligned_cols=27 Identities=41% Similarity=0.556 Sum_probs=23.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+...+|+|+|.+|+||||||+.+....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998653
No 341
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.46 E-value=0.033 Score=57.36 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+..+|+|.|.+|+||||||+.++...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998764
No 342
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.46 E-value=0.12 Score=57.03 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=34.3
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 180 VYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
++|....+.++.+.+... .....-|.|+|..|+||+++|+.++...
T Consensus 1 liG~S~~m~~~~~~~~~~------a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL------APLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHH------hCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 367777777777776552 1233467899999999999999998754
No 343
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.46 E-value=0.25 Score=49.09 Aligned_cols=23 Identities=48% Similarity=0.561 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
++.++|++|+||||++..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999888754
No 344
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.41 E-value=0.21 Score=57.02 Aligned_cols=85 Identities=18% Similarity=0.236 Sum_probs=46.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCH--HHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDV--LSISKALLESITRKPCHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1112)
+++.++|++|+||||++..+....... ..-..+..|+... +.. .+.++...+.++.......+..+....+.+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~---~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~- 296 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALL---YGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ- 296 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHh---cCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-
Confidence 599999999999999988776544301 1123455666543 221 122333333343332223334444445543
Q ss_pred hCCCcEEEEEeCC
Q 047598 286 VDGKRFLLVLDDV 298 (1112)
Q Consensus 286 l~~kr~LlVlDdv 298 (1112)
+. ..=+|++|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 23 3467888965
No 345
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.31 E-value=0.22 Score=47.82 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988754
No 346
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.31 E-value=0.039 Score=54.20 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
..++.+.|+.|+|||.+|+.+.+-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56889999999999999999987653
No 347
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.30 E-value=0.061 Score=49.78 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
..+|.+.|.-|+||||+++.+.+...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998754
No 348
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.28 E-value=0.24 Score=51.74 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=24.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
....+++|.|..|+|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999999887654
No 349
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.28 E-value=0.16 Score=57.70 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...++.++|.+|+||||+|..++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999987777653
No 350
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.25 E-value=0.035 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998643
No 351
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.24 E-value=0.16 Score=49.71 Aligned_cols=117 Identities=16% Similarity=0.068 Sum_probs=60.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC--CCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD--VFDVLSISKALLESITRKPCHLNTLNEVQVDLKT 284 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 284 (1112)
-.+++|+|..|.|||||.+.++..... ....+++.-.. ..+..+..+ ..++... ....-+...-.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~------~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~lar 95 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP------DSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIAR 95 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC------CCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHH
Confidence 348999999999999999999876432 12223321111 011111110 1111100 11122222334556
Q ss_pred HhCCCcEEEEEeCCCCC-ChhhHHHHHhcccCC-CCCcEEEEEcCChhhhh
Q 047598 285 AVDGKRFLLVLDDVWNE-DYSLWVDLKAPLLAA-APNSKMIITTRHSHVAS 333 (1112)
Q Consensus 285 ~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~ 333 (1112)
.+-.++-++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 66667788899987432 223333343333322 23667888888866443
No 352
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.24 E-value=0.069 Score=48.29 Aligned_cols=52 Identities=15% Similarity=0.298 Sum_probs=35.1
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
..++|..-..+.|++.+.. -.........-|++.+|++|+|||.+|+.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~-~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKG-HLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHH-HHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3566766666666555542 111113456789999999999999998877766
No 353
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.23 E-value=0.2 Score=53.54 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=21.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYN 229 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~ 229 (1112)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999987644
No 354
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.22 E-value=0.35 Score=50.90 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=71.5
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccc--cC-----CCCceeEEEEeCCCC-CHHHHHHHHHHHhcCCCC---------C
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNA--KD-----FKFDIKAWVCISDVF-DVLSISKALLESITRKPC---------H 271 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~-----~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~---------~ 271 (1112)
+..|+|++|+|||+||..++-...... -+ ..=..+++++...+. .+.+-+..+...++.... .
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 567899999999999988875432110 00 011234555555443 233344444443321100 0
Q ss_pred -------C---CChHHHHHHHHHHh-CCCcEEEEEeCCCC------CChhhHHHHHhcccC--CCCCcEEEEEcCChhhh
Q 047598 272 -------L---NTLNEVQVDLKTAV-DGKRFLLVLDDVWN------EDYSLWVDLKAPLLA--AAPNSKMIITTRHSHVA 332 (1112)
Q Consensus 272 -------~---~~~~~~~~~l~~~l-~~kr~LlVlDdv~~------~~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~ 332 (1112)
. .........+.+.+ ..+.-+||+|-+-. .+......+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 01122233333332 34667999996521 222333344443322 23477788877654221
Q ss_pred h--------hcC-------CCceeeCCCCChHhHHH
Q 047598 333 S--------TMG-------PIKHYNLKRLLDEDCWS 353 (1112)
Q Consensus 333 ~--------~~~-------~~~~~~l~~L~~~~~~~ 353 (1112)
. ..+ ..-.+.+.+++++|+.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 1 001 12356777777777766
No 355
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.18 E-value=0.039 Score=58.85 Aligned_cols=95 Identities=23% Similarity=0.288 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 047598 187 KARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESIT 266 (1112)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 266 (1112)
...+++.+.. ..+-+.++|..|+|||++++........ ..| ...-++.+..-....++ .++++-.
T Consensus 22 ~~~ll~~l~~---------~~~pvLl~G~~GtGKT~li~~~l~~l~~----~~~-~~~~~~~s~~Tts~~~q-~~ie~~l 86 (272)
T PF12775_consen 22 YSYLLDLLLS---------NGRPVLLVGPSGTGKTSLIQNFLSSLDS----DKY-LVITINFSAQTTSNQLQ-KIIESKL 86 (272)
T ss_dssp HHHHHHHHHH---------CTEEEEEESSTTSSHHHHHHHHHHCSTT----CCE-EEEEEES-TTHHHHHHH-HCCCTTE
T ss_pred HHHHHHHHHH---------cCCcEEEECCCCCchhHHHHhhhccCCc----ccc-ceeEeeccCCCCHHHHH-HHHhhcE
Confidence 4456666655 2346789999999999999998865431 122 23344555443333332 2222111
Q ss_pred CCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhh
Q 047598 267 RKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSL 305 (1112)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~ 305 (1112)
..... . ...--.+|+.++++||+.-...+.
T Consensus 87 ~k~~~-~--------~~gP~~~k~lv~fiDDlN~p~~d~ 116 (272)
T PF12775_consen 87 EKRRG-R--------VYGPPGGKKLVLFIDDLNMPQPDK 116 (272)
T ss_dssp CECTT-E--------EEEEESSSEEEEEEETTT-S---T
T ss_pred EcCCC-C--------CCCCCCCcEEEEEecccCCCCCCC
Confidence 00000 0 000014789999999996544333
No 356
>PRK10867 signal recognition particle protein; Provisional
Probab=94.15 E-value=0.15 Score=57.93 Aligned_cols=26 Identities=38% Similarity=0.431 Sum_probs=21.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+|.++|.+|+||||.|..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999877766543
No 357
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.14 E-value=0.33 Score=48.12 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|..|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 358
>PRK13948 shikimate kinase; Provisional
Probab=94.14 E-value=0.32 Score=48.30 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
..+.|.++|+.|+||||+++.+.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456889999999999999999987653
No 359
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.12 E-value=0.27 Score=51.62 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=34.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKA 260 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 260 (1112)
..-.++.|.|.+|+|||++|.++..... ..-..++||+.... ..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~-----~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL-----QMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCcEEEEEeeCC--HHHHHHH
Confidence 4567999999999999999988655432 12456888887764 3344443
No 360
>PRK06762 hypothetical protein; Provisional
Probab=94.12 E-value=0.04 Score=54.35 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|.|+|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998764
No 361
>PTZ00035 Rad51 protein; Provisional
Probab=94.12 E-value=0.47 Score=52.41 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=40.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcccccc-ccCCCCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLN-AKDFKFDIKAWVCISDVFDVLSISKALLESIT 266 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 266 (1112)
..-.++.|+|.+|+|||||+..++-..... ..++.-..++|++....++..++ .++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 456799999999999999998886543310 00112346779998887777663 44455544
No 362
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.11 E-value=0.047 Score=67.04 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=55.9
Q ss_pred CCcEEEEEeCCCCC-ChhhHHHH----HhcccCCCCCcEEEEEcCChhhhhhcCCCceeeCCCCChH-hHHHHHHHhHhC
Q 047598 288 GKRFLLVLDDVWNE-DYSLWVDL----KAPLLAAAPNSKMIITTRHSHVASTMGPIKHYNLKRLLDE-DCWSIFIKHAYE 361 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~ 361 (1112)
..+-|+++|..-.. +......+ ...+. ..|+.+|+||-...+.........+.-..+.-+ +... |..+...
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Ykl~~ 477 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYKLLK 477 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEEECC
Confidence 47899999998643 22222223 22332 357899999999877543221111110001111 1000 1111111
Q ss_pred CCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCCCHHHHHHHHh
Q 047598 362 SRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTTRCDLWEDILD 409 (1112)
Q Consensus 362 ~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~l~ 409 (1112)
+.+. ...|-+|++++ |+|-.+.--|..+.+....++..++.
T Consensus 478 -G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~ 518 (771)
T TIGR01069 478 -GIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIE 518 (771)
T ss_pred -CCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1111 12466677666 78888888887776664445555444
No 363
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.07 E-value=0.49 Score=51.94 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=53.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF-DVLSISKALLESITRKPCHLNTLNEVQVDLK 283 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 283 (1112)
.+.++++|+|+.|+||||++..++...... -..+.+++..... ...+-++...+.++.......+..++...+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~-----g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~ 278 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ-----NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQ 278 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHH
Confidence 346899999999999999998887654222 2346666665322 2244455555555543322345555555444
Q ss_pred HHh-CCCcEEEEEeCCCC
Q 047598 284 TAV-DGKRFLLVLDDVWN 300 (1112)
Q Consensus 284 ~~l-~~kr~LlVlDdv~~ 300 (1112)
..- .+..=+|++|-.-.
T Consensus 279 ~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 279 YMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHhcCCCCEEEEECCCC
Confidence 332 13456788887643
No 364
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.04 E-value=0.24 Score=58.64 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=74.7
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
...++|+...+.++.+.+... .....-|.|+|..|+|||++|+.+++..... -...+.|.+....+ ..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-----~~p~v~v~c~~~~~-~~ 253 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV------AASDLNVLILGETGVGKELVARAIHAASPRA-----DKPLVYLNCAALPE-SL 253 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH------hCCCCcEEEECCCCccHHHHHHHHHHhCCcC-----CCCeEEEEcccCCh-HH
Confidence 456899999999998888652 2234578899999999999999998864311 11234455554332 11
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCC-----------CCcEEEEE
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAA-----------PNSKMIIT 325 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 325 (1112)
+...++........... ......+. ..+ .=.|+||+|..-.......+...+.... ...|||.|
T Consensus 254 ~e~~lfG~~~g~~~ga~--~~~~g~~~--~a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~ 328 (509)
T PRK05022 254 AESELFGHVKGAFTGAI--SNRSGKFE--LAD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAA 328 (509)
T ss_pred HHHHhcCccccccCCCc--ccCCcchh--hcC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEe
Confidence 11122111111000000 00000111 112 2347899998776666666665553321 24588888
Q ss_pred cCCh
Q 047598 326 TRHS 329 (1112)
Q Consensus 326 TR~~ 329 (1112)
|...
T Consensus 329 t~~~ 332 (509)
T PRK05022 329 TNRD 332 (509)
T ss_pred cCCC
Confidence 8643
No 365
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.03 E-value=0.12 Score=57.28 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=49.9
Q ss_pred CcceecchhhHHHHHHHHhcC------CCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC
Q 047598 177 ERAVYGRDKDKARILKMVLST------DEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD 250 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~ 250 (1112)
+..++|.++.+..+.-.+... ..+.......+-|.++|++|+|||++|+.+.......+ ..++..-+...+.
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f--i~vdat~~~e~g~ 88 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF--IKVEATKFTEVGY 88 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE--EEeecceeecCCc
Confidence 356889888888876655421 00000112235788999999999999999988764321 1122221222222
Q ss_pred -CCCHHHHHHHHHHHh
Q 047598 251 -VFDVLSISKALLESI 265 (1112)
Q Consensus 251 -~~~~~~~~~~il~~l 265 (1112)
..+...+.+.+.+..
T Consensus 89 vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 89 VGRDVESMVRDLTDAA 104 (441)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 225666666665544
No 366
>PRK03839 putative kinase; Provisional
Probab=93.99 E-value=0.039 Score=55.32 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.5
Q ss_pred EEEEEccCCCcHHHHHHHHhcccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.|.|+|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998754
No 367
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=1.6 Score=51.57 Aligned_cols=201 Identities=16% Similarity=0.123 Sum_probs=103.7
Q ss_pred cceecchhhHHHHHHHHhcCC-CC---CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTD-EK---TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~-~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
.++-|.++.+.+|.+-+.-+= +. +.+-....=|-++|++|.|||-+|++|+.+.... |++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~----------FlSVKGP-- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN----------FLSVKGP-- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee----------EEeecCH--
Confidence 356688888888887653210 00 0011223457789999999999999999875533 3454332
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh-------------hhHHHHHhcccCC----
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDY-------------SLWVDLKAPLLAA---- 316 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~~~l~~~l~~~---- 316 (1112)
+++..-+ | ...+.+.+...+.=..++|.|.+|.+++... ....++..-+..-
T Consensus 740 --ELLNMYV---G------qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~ 808 (953)
T KOG0736|consen 740 --ELLNMYV---G------QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS 808 (953)
T ss_pred --HHHHHHh---c------chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC
Confidence 1221111 1 1223344444555567899999999976321 1222233333222
Q ss_pred CCCcEEEEEcCChhhhhh--cC---CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHH
Q 047598 317 APNSKMIITTRHSHVAST--MG---PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKS 391 (1112)
Q Consensus 317 ~~gs~iivTTR~~~v~~~--~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1112)
..+-=||=.|..++.... +. -.+.+.|++=+++++..=..+..-..-..+++-.+ .+|+++|.- ++
T Consensus 809 s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL----~eiAk~cp~-----~~ 879 (953)
T KOG0736|consen 809 SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDL----VEIAKKCPP-----NM 879 (953)
T ss_pred CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCH----HHHHhhCCc-----CC
Confidence 223346666766665532 22 23566777777666644322222111111222333 567777754 22
Q ss_pred HhhhhcCCCHHHHHHHHhc
Q 047598 392 LGGLLRTTRCDLWEDILDS 410 (1112)
Q Consensus 392 ~~~~l~~~~~~~w~~~l~~ 410 (1112)
-|+-|+.-..+.|..++.+
T Consensus 880 TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 880 TGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 2333333334555555443
No 368
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.95 E-value=0.32 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
++.|+|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998753
No 369
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.94 E-value=0.3 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|..|.|||||++.+....
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4599999999999999999988764
No 370
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.92 E-value=0.23 Score=50.59 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=24.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcccccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLN 234 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 234 (1112)
.+...|.++||+|+||||..+.++.....+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 455688899999999999999998876533
No 371
>PRK06217 hypothetical protein; Validated
Probab=93.91 E-value=0.089 Score=52.78 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.5
Q ss_pred EEEEEccCCCcHHHHHHHHhcccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.|.|.|.+|+||||+|+++.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998754
No 372
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.91 E-value=0.061 Score=60.89 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=37.1
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..++||++.++.+...+.. + .-|.|.|.+|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aala-g---------~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS-G---------ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHcc-C---------CCEEEECCCChhHHHHHHHHHHHh
Confidence 3688999999999988876 1 257899999999999999998754
No 373
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.87 E-value=0.35 Score=49.09 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
++++|+|+.|.|||||.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999888643
No 374
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.72 Score=46.28 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=37.2
Q ss_pred HHHHHhCCCcEEEEEeCCCCC-ChhhHHHHHhcccC-CCCCcEEEEEcCChhhhhhcCCCcee
Q 047598 281 DLKTAVDGKRFLLVLDDVWNE-DYSLWVDLKAPLLA-AAPNSKMIITTRHSHVASTMGPIKHY 341 (1112)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~~~~~~~ 341 (1112)
.+.+.+--++-+.|||..++- +.+....+...+.. ..+|+.+||.|-.+.++....+...+
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344444556779999998753 22333333332221 23577888888888998887655443
No 375
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.75 E-value=0.092 Score=53.86 Aligned_cols=63 Identities=24% Similarity=0.189 Sum_probs=37.8
Q ss_pred hHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 186 DKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
+..++++.+.. ..++..+|+|.|.+|+||+||..++......+ ++=-.++-|.-|.+++--.+
T Consensus 14 ~~~~ll~~l~~------~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~---g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYP------HTGRAHVIGITGPPGAGKSTLIDALIRELRER---GKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGG------GTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT---T--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHh------hcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc---CCceEEEEECCCCCCCCCcc
Confidence 45566776655 23457899999999999999998887766533 33334455555555554333
No 376
>PRK00625 shikimate kinase; Provisional
Probab=93.74 E-value=0.044 Score=53.92 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHhcccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.|.++||+|+||||+|+.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987653
No 377
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.72 E-value=0.2 Score=50.99 Aligned_cols=82 Identities=26% Similarity=0.359 Sum_probs=49.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCCCChHH--
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF-DVLSISKALLESITRKP-------CHLNTLNE-- 277 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~-- 277 (1112)
.-++|.|.+|+|||+|+..+.+... -+.++++.+++.. .+.++.+++...-.... .+......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~-------~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD-------ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT-------TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc-------ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 4688999999999999999988753 2344788887664 44455555533211100 11111111
Q ss_pred -------HHHHHHHHhCCCcEEEEEeCC
Q 047598 278 -------VQVDLKTAVDGKRFLLVLDDV 298 (1112)
Q Consensus 278 -------~~~~l~~~l~~kr~LlVlDdv 298 (1112)
..+.++. ++|.+|+++||+
T Consensus 89 ~~~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 89 APYTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred hhccchhhhHHHhh--cCCceeehhhhh
Confidence 1122233 799999999999
No 378
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.72 E-value=0.5 Score=48.55 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=58.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC---CCCChHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPC---HLNTLNEVQVDLK 283 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~ 283 (1112)
.+++.|+|..|.||||+.+.+....... +.+.|.......++ ...++...+..... .......-..++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la-~~G~~v~a~~~~~~-------~~d~i~~~l~~~~si~~~~S~f~~el~~l~ 100 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLA-HIGSFVPADSATIG-------LVDKIFTRMSSRESVSSGQSAFMIDLYQVS 100 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHH-hCCCeeEcCCcEEe-------eeeeeeeeeCCccChhhccchHHHHHHHHH
Confidence 4789999999999999999886321100 00222111011110 11111122221110 1111222222222
Q ss_pred H--HhCCCcEEEEEeCCCCCCh-hhH----HHHHhcccCC-CCCcEEEEEcCChhhhhhc
Q 047598 284 T--AVDGKRFLLVLDDVWNEDY-SLW----VDLKAPLLAA-APNSKMIITTRHSHVASTM 335 (1112)
Q Consensus 284 ~--~l~~kr~LlVlDdv~~~~~-~~~----~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 335 (1112)
. .+..++-|++||..-.... .+. ..+...+... ..+..+|+||-+.+++...
T Consensus 101 ~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 101 KALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 2 2346789999999865321 111 1233333332 2345799999988877654
No 379
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.70 E-value=0.45 Score=47.61 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
-.+++|+|..|.|||||.+.+.....
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999987643
No 380
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.67 E-value=4 Score=44.14 Aligned_cols=159 Identities=10% Similarity=0.089 Sum_probs=88.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccc------cccCCCCceeEEEEe-CCCCCHHHHHHHHHHHhcCCCCCCCChHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSL------NAKDFKFDIKAWVCI-SDVFDVLSISKALLESITRKPCHLNTLNEVQ 279 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~------~~~~~~F~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 279 (1112)
..+.-++|..|.||+++|..+.+..-- ......++ ..++.. +....+.++ +++.+.+....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n-~~~~d~~g~~i~vd~I-r~l~~~~~~~~---------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPAN-IILFDIFDKDLSKSEF-LSAINKLYFSS---------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcc-eEEeccCCCcCCHHHH-HHHHHHhccCC----------
Confidence 456779999999999999888765410 10001122 222211 111222211 12222221110
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC-hhhhhh-cCCCceeeCCCCChHhHHHHHHH
Q 047598 280 VDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH-SHVAST-MGPIKHYNLKRLLDEDCWSIFIK 357 (1112)
Q Consensus 280 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~ 357 (1112)
.-.+++=++|+|++..........+...+....+++.+|++|.+ ..+... ......+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 01246778899999776666677777777666667777765544 344433 23457899999999998877765
Q ss_pred hHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 358 HAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
. + . + ++.+..++...+|.=-|+..+
T Consensus 161 ~--~--~--~----~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 161 K--N--K--E----KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred c--C--C--C----hhHHHHHHHHcCCHHHHHHHH
Confidence 3 1 1 1 123555666667633455543
No 381
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.63 E-value=0.49 Score=48.54 Aligned_cols=208 Identities=12% Similarity=0.144 Sum_probs=108.4
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccc-ccCCCCceeEEEEeCCC-------
Q 047598 180 VYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLN-AKDFKFDIKAWVCISDV------- 251 (1112)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~~~~F~~~~wv~~~~~------- 251 (1112)
+.++++....+...... +...-..++|+.|.||-|.+..+.++..-. ...-.-+..-|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~--------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistv 86 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST--------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTV 86 (351)
T ss_pred cccHHHHHHHHHHhccc--------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEe
Confidence 55666666666655432 346678899999999998876665543110 00012234445443322
Q ss_pred ---C-----------CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcE-EEEEeCCCCCChhhHHHHHhcccCC
Q 047598 252 ---F-----------DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRF-LLVLDDVWNEDYSLWVDLKAPLLAA 316 (1112)
Q Consensus 252 ---~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (1112)
+ .-..+.++++++...... +. .-..+.| ++|+-.++.-..+.-..++.....-
T Consensus 87 sS~yHlEitPSDaG~~DRvViQellKevAQt~q-----------ie-~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY 154 (351)
T KOG2035|consen 87 SSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------IE-TQGQRPFKVVVINEADELTRDAQHALRRTMEKY 154 (351)
T ss_pred cccceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------hh-hccccceEEEEEechHhhhHHHHHHHHHHHHHH
Confidence 1 112233333333322110 00 0012344 5566666544333334455444444
Q ss_pred CCCcEEEEEcCCh-hhhhhc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch-HHHHHHh
Q 047598 317 APNSKMIITTRHS-HVASTM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP-LAAKSLG 393 (1112)
Q Consensus 317 ~~gs~iivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 393 (1112)
...+|+|+.-.+. .+.... +..-.+.+...+++|-...+++.+-..+-. -+ .+++.+|+++++|.- -|+-++-
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~-lp---~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ-LP---KELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc-Cc---HHHHHHHHHHhcccHHHHHHHHH
Confidence 4567877743321 111111 122457889999999999998877544332 11 557899999988753 3443332
Q ss_pred hhh-c------C--C-CHHHHHHHHhcc
Q 047598 394 GLL-R------T--T-RCDLWEDILDSK 411 (1112)
Q Consensus 394 ~~l-~------~--~-~~~~w~~~l~~~ 411 (1112)
..- . . . ...+|+-++.+.
T Consensus 231 ~~~~~n~~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 231 AVRVNNEPFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred HHHhccccccccCCCCCCccHHHHHHHH
Confidence 211 1 1 1 457898877653
No 382
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.63 E-value=0.051 Score=54.94 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|.|+|++|+||||+|+.+....
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999998653
No 383
>PHA00729 NTP-binding motif containing protein
Probab=93.62 E-value=0.1 Score=53.04 Aligned_cols=26 Identities=42% Similarity=0.478 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
....|.|+|.+|+||||||..+.+..
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998763
No 384
>PRK04040 adenylate kinase; Provisional
Probab=93.59 E-value=0.055 Score=54.19 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=21.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|+|+|++|+||||+++.+.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 385
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.57 E-value=0.49 Score=49.18 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|..|.|||||++.+....
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999998754
No 386
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.57 E-value=0.48 Score=57.21 Aligned_cols=87 Identities=22% Similarity=0.221 Sum_probs=50.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD--VLSISKALLESITRKPCHLNTLNEVQVDLKT 284 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 284 (1112)
.+|++++|+.|+||||.+.++....... .....+..++.. .+. ..+-++...+.++.......+..++...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~---~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~- 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR---EGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA- 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH---cCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-
Confidence 4799999999999999998887654221 111244455443 333 344555555656544433345555544444
Q ss_pred HhCCCcEEEEEeCCC
Q 047598 285 AVDGKRFLLVLDDVW 299 (1112)
Q Consensus 285 ~l~~kr~LlVlDdv~ 299 (1112)
.++++. +|++|=.-
T Consensus 260 ~~~~~D-~VLIDTAG 273 (767)
T PRK14723 260 ALGDKH-LVLIDTVG 273 (767)
T ss_pred HhcCCC-EEEEeCCC
Confidence 344443 66677653
No 387
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.57 E-value=0.1 Score=54.26 Aligned_cols=64 Identities=25% Similarity=0.179 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHH
Q 047598 188 ARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKA 260 (1112)
Q Consensus 188 ~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 260 (1112)
.+++..+.. ..++..+|+|.|.||+||+||..++......+ ++=-.++-|.-|.+++--.++.+
T Consensus 38 ~~ll~~l~p------~tG~a~viGITG~PGaGKSTli~~L~~~l~~~---G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYP------RTGNAHVIGITGVPGAGKSTLIEALGRELRER---GHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhh------cCCCCcEEEecCCCCCchHHHHHHHHHHHHHC---CcEEEEEEECCCCCCCCcccccc
Confidence 455555554 34567899999999999999998888776544 45455666666777665555443
No 388
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.55 E-value=0.45 Score=54.58 Aligned_cols=88 Identities=14% Similarity=0.160 Sum_probs=46.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD-VFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1112)
.+|++++|..|+||||++.+++.....+ ..-..+..++... .....+-++...+.++.......+..+....+ ..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~ 331 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMR---HGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SE 331 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHh---cCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hh
Confidence 4799999999999999999988654322 1112344555432 12233334444555443322222222222222 23
Q ss_pred hCCCcEEEEEeCCC
Q 047598 286 VDGKRFLLVLDDVW 299 (1112)
Q Consensus 286 l~~kr~LlVlDdv~ 299 (1112)
++++ ..+++|-.-
T Consensus 332 L~d~-d~VLIDTaG 344 (484)
T PRK06995 332 LRNK-HIVLIDTIG 344 (484)
T ss_pred ccCC-CeEEeCCCC
Confidence 4444 366777753
No 389
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.54 E-value=0.36 Score=49.18 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999998875
No 390
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.48 Score=47.86 Aligned_cols=55 Identities=24% Similarity=0.205 Sum_probs=37.6
Q ss_pred cceecchhhHHHHHHHHhcCC---CC--CCCCCCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 178 RAVYGRDKDKARILKMVLSTD---EK--TDDDANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~---~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
+.+-|-.++++++.+...-+- +. .-+-...+=|.++|++|.|||-+|++|+|+..
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC
Confidence 456677888888776553210 00 00223456678999999999999999999764
No 391
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.48 E-value=1 Score=46.22 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
-.+++|.|..|.|||||++.+..-
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999764
No 392
>PTZ00494 tuzin-like protein; Provisional
Probab=93.47 E-value=3.3 Score=45.87 Aligned_cols=170 Identities=9% Similarity=0.142 Sum_probs=103.4
Q ss_pred CCCCCCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 172 SSVPTERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 172 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
..+.....+|.|+.+-..+.+.|.+.+ ....+++.+.|.-|.||++|.+....... -..++|.+...
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld-----~aHPRIvV~TG~~GcGKSslcRsAvrkE~--------~paV~VDVRg~ 431 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMA-----PSHPRIVALAGGSGGGRCVPCRRAVRVEG--------VALVHVDVGGT 431 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhcc-----CCCCcEEEEecCCCCCchHHHHHHHHHcC--------CCeEEEEecCC
Confidence 344566789999999999888887632 35789999999999999999998876543 23567777655
Q ss_pred CCHHHHHHHHHHHhcCCCCCC--CChHHHHH---HHHHHhCCCcEEEEEeCCCCCC-hhhHHHHHhcccCCCCCcEEEEE
Q 047598 252 FDVLSISKALLESITRKPCHL--NTLNEVQV---DLKTAVDGKRFLLVLDDVWNED-YSLWVDLKAPLLAAAPNSKMIIT 325 (1112)
Q Consensus 252 ~~~~~~~~~il~~l~~~~~~~--~~~~~~~~---~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivT 325 (1112)
++.++.+.+.++....+. +-++-..+ .-+....++.=+||+-=-+..+ ...+.+.. .|.....-|.|++-
T Consensus 432 ---EDtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~E 507 (664)
T PTZ00494 432 ---EDTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLA 507 (664)
T ss_pred ---cchHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeee
Confidence 446788899998765332 12222222 2233345666666654222111 12222222 23333345677765
Q ss_pred cCChhhhhh---cCCCceeeCCCCChHhHHHHHHHh
Q 047598 326 TRHSHVAST---MGPIKHYNLKRLLDEDCWSIFIKH 358 (1112)
Q Consensus 326 TR~~~v~~~---~~~~~~~~l~~L~~~~~~~Lf~~~ 358 (1112)
--.+.+.-. ..-...|.+..++.++|.+...+.
T Consensus 508 VplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 508 VPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred chHhhhchhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 443332211 112356888999999988876554
No 393
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.46 E-value=0.98 Score=46.21 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
-.+++|.|..|.|||||++.+..-..
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 35899999999999999999987643
No 394
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.42 E-value=0.047 Score=49.06 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEccCCCcHHHHHHHHhcccc
Q 047598 210 IPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 210 v~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
|-|+|.+|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999877653
No 395
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.41 E-value=0.21 Score=53.08 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=31.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..-.++.|.|.+|+|||++|.++...... .-..+++++...+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~-----~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQAS-----RGNPVLFVTVESPA 76 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHh-----CCCcEEEEEecCCc
Confidence 45679999999999999999987654321 23467788886543
No 396
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.41 E-value=0.12 Score=52.55 Aligned_cols=120 Identities=18% Similarity=0.185 Sum_probs=60.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCChHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCH---LNTLNEVQVDLK 283 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~ 283 (1112)
.+++.|.|..|.||||+.+.+.--.-.. +-+.| |... .....+.+.+...++..... ..........+.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la-~~G~~-----vpa~--~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~ 100 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA-QIGCF-----VPAE--YATLPIFNRLLSRLSNDDSMERNLSTFASEMSETA 100 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH-HcCCC-----cchh--hcCccChhheeEecCCccccchhhhHHHHHHHHHH
Confidence 4789999999999999998876432110 00122 1111 00112223333333322110 011111111222
Q ss_pred HH--hCCCcEEEEEeCCCCCC-hhh----HHHHHhcccCCCCCcEEEEEcCChhhhhhcC
Q 047598 284 TA--VDGKRFLLVLDDVWNED-YSL----WVDLKAPLLAAAPNSKMIITTRHSHVASTMG 336 (1112)
Q Consensus 284 ~~--l~~kr~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~ 336 (1112)
.. +..++-|+++|...... ..+ ...+...+.. .|+.+|++|-+.+++....
T Consensus 101 ~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 101 YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 22 23567899999974321 111 1223333333 3789999999988887654
No 397
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.41 E-value=0.074 Score=50.73 Aligned_cols=25 Identities=44% Similarity=0.510 Sum_probs=22.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.||-|.|.+|+||||||+++.+...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998764
No 398
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.39 E-value=0.73 Score=47.57 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|..|.|||||++.+....
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 399
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.38 E-value=0.078 Score=51.67 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=23.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
....+++|+|..|+|||||++.+.....
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 3467999999999999999999987654
No 400
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.36 E-value=0.052 Score=53.92 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998764
No 401
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.35 E-value=0.37 Score=54.33 Aligned_cols=87 Identities=18% Similarity=0.236 Sum_probs=44.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD-VFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1112)
..+++++|..|+||||++..+....... .....+..++... .....+-+....+.++.......+..+....+. .
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~---~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~ 266 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIR---HGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-E 266 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh---cCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-H
Confidence 4699999999999999998776542211 1122334444332 122333344444454443333333333333322 3
Q ss_pred hCCCcEEEEEeCC
Q 047598 286 VDGKRFLLVLDDV 298 (1112)
Q Consensus 286 l~~kr~LlVlDdv 298 (1112)
++++ -++++|-.
T Consensus 267 l~~~-d~VLIDTa 278 (420)
T PRK14721 267 LRGK-HMVLIDTV 278 (420)
T ss_pred hcCC-CEEEecCC
Confidence 4443 34566654
No 402
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.33 E-value=0.41 Score=54.10 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=47.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCChHHH--
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKP------CHLNTLNEV-- 278 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~------~~~~~~~~~-- 278 (1112)
-..++|+|..|+|||||++.+..... ....+++..-....++.++....+....... .+.......
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~------pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~ 238 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA------FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLA 238 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC------CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHH
Confidence 35799999999999999999876532 1223444432234455555444444331111 111111111
Q ss_pred ---HHHHHHHh--CCCcEEEEEeCC
Q 047598 279 ---QVDLKTAV--DGKRFLLVLDDV 298 (1112)
Q Consensus 279 ---~~~l~~~l--~~kr~LlVlDdv 298 (1112)
.-.+.+++ +++.+|+++||+
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 11123333 589999999998
No 403
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.33 E-value=0.19 Score=55.79 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=50.6
Q ss_pred CcceecchhhHHHHHHHHhcC------CCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC
Q 047598 177 ERAVYGRDKDKARILKMVLST------DEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD 250 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~ 250 (1112)
+..++|.+..+..+..++... ......+-..+-+.++|++|+|||++|+.+.......+ -.++..-|...+-
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f--i~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF--IKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh--eeecchhhccCCc
Confidence 456889999888888777430 00000111135689999999999999999988754321 2223222222211
Q ss_pred -CCCHHHHHHHHHHHh
Q 047598 251 -VFDVLSISKALLESI 265 (1112)
Q Consensus 251 -~~~~~~~~~~il~~l 265 (1112)
..+...+.+.+.+..
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 225556666666554
No 404
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.31 E-value=0.66 Score=48.95 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
-.+++|+|..|+|||||++.+.....
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35999999999999999999987643
No 405
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.30 E-value=0.49 Score=52.88 Aligned_cols=41 Identities=27% Similarity=0.199 Sum_probs=30.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
.-.++.|.|.+|+|||||+.+++..... ....++|++..+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~-----~g~~VlYvs~EEs 121 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK-----RGGKVLYVSGEES 121 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh-----cCCeEEEEECCcC
Confidence 4569999999999999999998876532 2246778776543
No 406
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.29 E-value=0.1 Score=56.27 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=44.1
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...|+|.++.++++++.+.+.... .+..-+|+.++|+.|.||||||..+-+-.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g--~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQG--LEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhc--cCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999998764332 34567899999999999999999987754
No 407
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.18 E-value=0.054 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998754
No 408
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.18 E-value=0.28 Score=45.84 Aligned_cols=82 Identities=13% Similarity=0.282 Sum_probs=31.9
Q ss_pred cccccccCCcccEEEeccccccccc-ccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccCc-cccC
Q 047598 584 LSDLLPKFKRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLPS-KMRN 660 (1112)
Q Consensus 584 ~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~ 660 (1112)
....|..+..|+.+.+.++ +..++ ..|.++..|+++.+.+ .+..++. .|..+.+|+.+++..+ +..++. .+.+
T Consensus 27 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~ 102 (129)
T PF13306_consen 27 GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSN 102 (129)
T ss_dssp -TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT
T ss_pred Chhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhhhcC
Confidence 3444555555555555543 44443 2355555556665544 3333333 2344555555555432 333322 2334
Q ss_pred CccccEEeec
Q 047598 661 LINLHHLDIK 670 (1112)
Q Consensus 661 L~~L~~L~L~ 670 (1112)
. +|+.+.+.
T Consensus 103 ~-~l~~i~~~ 111 (129)
T PF13306_consen 103 C-NLKEINIP 111 (129)
T ss_dssp --T--EEE-T
T ss_pred C-CceEEEEC
Confidence 3 55555544
No 409
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.17 E-value=0.32 Score=54.67 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=50.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCH-HHHHHHHHHHhcCCC-------CCCCChHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDV-LSISKALLESITRKP-------CHLNTLNEV 278 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~il~~l~~~~-------~~~~~~~~~ 278 (1112)
-..++|+|..|+|||||++.+.+.. ..+.++.+-+++...- .++.+.++..-+... .+.......
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~-------~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT-------TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC-------CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 3579999999999999999998643 2345666777766543 344444433311111 011111111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCC
Q 047598 279 -----QVDLKTAV--DGKRFLLVLDDV 298 (1112)
Q Consensus 279 -----~~~l~~~l--~~kr~LlVlDdv 298 (1112)
.-.+.+++ +++.+|+++||+
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 11233333 689999999999
No 410
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.16 E-value=0.069 Score=53.44 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999987764
No 411
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.15 E-value=0.8 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHhcccc
Q 047598 210 IPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 210 v~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
+++.|++|+||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999987653
No 412
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.15 E-value=0.058 Score=55.03 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 047598 209 VIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
+|+|.|.+|+||||+|+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 413
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.14 E-value=0.14 Score=47.15 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.-|.|.|-+|+||||+|.++.....
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhC
Confidence 3578999999999999999986543
No 414
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.14 E-value=0.12 Score=55.79 Aligned_cols=85 Identities=24% Similarity=0.182 Sum_probs=49.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPC-----HLNTLNEVQ 279 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~ 279 (1112)
+.-+++-|+|..|+||||||..+..... ..-..++|+.....++.. .++.++.... .....++..
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~q-----~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al 120 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEAQ-----KQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQAL 120 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-----HTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhhh-----cccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHH
Confidence 3457999999999999999988887643 224568899998887653 3444443321 122334444
Q ss_pred HHHHHHhC-CCcEEEEEeCCC
Q 047598 280 VDLKTAVD-GKRFLLVLDDVW 299 (1112)
Q Consensus 280 ~~l~~~l~-~kr~LlVlDdv~ 299 (1112)
......++ +.--++|+|-|-
T Consensus 121 ~~~e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 121 WIAEQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHHHHTTSESEEEEE-CT
T ss_pred HHHHHHhhcccccEEEEecCc
Confidence 44444443 334478888874
No 415
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.09 E-value=0.086 Score=52.50 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|+|+|++|+||||+|+.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999998765
No 416
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.08 E-value=0.22 Score=46.59 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=58.7
Q ss_pred cccccccCCcccEEEeccccccccc-ccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccCc-cccC
Q 047598 584 LSDLLPKFKRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLPS-KMRN 660 (1112)
Q Consensus 584 ~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~ 660 (1112)
....|.++.+|+.+.+.. .+..++ ..|.++.+|+.+.+.++ +..++. .|..+.+|+.+.+.. .+..++. .+..
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~ 79 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSN 79 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccc
Confidence 445688888999999885 566665 46888889999999885 777665 467787899999975 3444544 4666
Q ss_pred CccccEEeecCCCccccCCCC-CCCCCCCCccC
Q 047598 661 LINLHHLDIKGANLLREMPLG-MKELKNLRTLS 692 (1112)
Q Consensus 661 L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~ 692 (1112)
+++|+.+.+..+ +..++.. +.+. +|+.+.
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEE
Confidence 899999998654 3444433 4444 555443
No 417
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.99 E-value=0.23 Score=52.68 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=24.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.+..+|.|+|.+|+|||||...+.+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5688999999999999999999988653
No 418
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.95 E-value=0.31 Score=47.47 Aligned_cols=118 Identities=23% Similarity=0.196 Sum_probs=59.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
.+++|+|..|.|||||++.+...... ....+++.-....... .......++... ....-+...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~------~~G~i~~~~~~~~~~~--~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP------TSGEILIDGKDIAKLP--LEELRRRIGYVP-QLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC------CccEEEECCEEcccCC--HHHHHhceEEEe-eCCHHHHHHHHHHHHHh
Confidence 59999999999999999999876532 2222332211111100 001111111100 01111222334555666
Q ss_pred CCcEEEEEeCCCCC-ChhhHHHHHhcccCC-CCCcEEEEEcCChhhhhh
Q 047598 288 GKRFLLVLDDVWNE-DYSLWVDLKAPLLAA-APNSKMIITTRHSHVAST 334 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 334 (1112)
...=++++|+.-.. +......+...+... ..+..++++|.+......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 66788999987532 222233333333221 125678888887766554
No 419
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.91 E-value=0.073 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999998764
No 420
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.84 E-value=0.61 Score=49.45 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|..|+|||||++.++...
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 421
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.84 E-value=0.39 Score=51.05 Aligned_cols=51 Identities=29% Similarity=0.412 Sum_probs=39.3
Q ss_pred CCcceecchhhHHH---HHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 176 TERAVYGRDKDKAR---ILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
....+||..+..+. |+++..+ +.-.-+.|-|+|++|.|||+||-.+.+..-
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQ------GKMAGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHh------CcccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34578998766554 6777765 334567899999999999999999998764
No 422
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.83 E-value=0.15 Score=51.08 Aligned_cols=43 Identities=26% Similarity=0.168 Sum_probs=29.3
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHH
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVL 255 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 255 (1112)
.|+|+|-||+||||+|..+......+ +.| .+.-|.....+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~---~~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK---GGY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc---CCc-eEEEEeCCCCCChH
Confidence 58999999999999998855544322 223 34556666666644
No 423
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.82 E-value=0.092 Score=49.35 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++++|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998887654
No 424
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.77 E-value=0.56 Score=48.87 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=31.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHH
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKAL 261 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 261 (1112)
...++.|.|.+|+||||+|.++....... + ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g--~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN---G--YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC---C--CcEEEEeCCC--CHHHHHHHH
Confidence 34599999999999999986665543211 1 3456666444 334555554
No 425
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.77 E-value=0.062 Score=48.72 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=17.5
Q ss_pred EEEEccCCCcHHHHHHHHhcccc
Q 047598 210 IPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 210 v~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
|-|+|.+|+||||+|+.+.....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT
T ss_pred EeeECCCccHHHHHHHHHHHHcC
Confidence 56899999999999999998754
No 426
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.77 E-value=0.074 Score=52.96 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 427
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.76 E-value=0.45 Score=48.24 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=28.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCC-------CceeEEEEeCCCC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFK-------FDIKAWVCISDVF 252 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~-------F~~~~wv~~~~~~ 252 (1112)
.++.|+|.+|+||||++.++....... ... =..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g--~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATG--RPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT-----TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhC--CccCCcccccCceEEEEeccCCH
Confidence 388999999999999998877665421 011 1377888877663
No 428
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.75 E-value=0.0049 Score=60.62 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=78.8
Q ss_pred cccc-ccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCC
Q 047598 605 GELL-VSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMK 683 (1112)
Q Consensus 605 ~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 683 (1112)
+.+| ..+......+.||++.|++..+-..|+.++.|..||++.| .+..+|.+++.+..++++++..|+ ....|.+.+
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~ 108 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQK 108 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCcccc
Confidence 4455 3466778899999999999999899999999999999997 899999999999999999998887 889999999
Q ss_pred CCCCCCccCeeee
Q 047598 684 ELKNLRTLSNFIV 696 (1112)
Q Consensus 684 ~l~~L~~L~~~~~ 696 (1112)
++++++.++.-.+
T Consensus 109 k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 109 KEPHPKKNEQKKT 121 (326)
T ss_pred ccCCcchhhhccC
Confidence 9999998876544
No 429
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.69 E-value=0.11 Score=52.01 Aligned_cols=38 Identities=32% Similarity=0.344 Sum_probs=29.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeC
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCIS 249 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~ 249 (1112)
.+++.|+|+.|+|||||++.+..... ..|...++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~-----~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP-----DKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST-----TTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc-----cccccceeeccc
Confidence 36899999999999999999998754 457655655543
No 430
>PRK04328 hypothetical protein; Provisional
Probab=92.69 E-value=0.38 Score=50.89 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=32.0
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..-.++.|.|.+|+|||+||.++..... ..-..++|++..+.+
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~-----~~ge~~lyis~ee~~ 63 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGL-----QMGEPGVYVALEEHP 63 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCcEEEEEeeCCH
Confidence 3467999999999999999988665432 223567888887654
No 431
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.68 E-value=0.086 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=22.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..|.|+|++|+||||+|+.+.+..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999865
No 432
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=2.2 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
=--++|++|.|||++..++++..
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999864
No 433
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.67 E-value=0.48 Score=49.76 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=53.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC-HHHHHHHHHHHhcCCC-------CCCCChHHH-
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD-VLSISKALLESITRKP-------CHLNTLNEV- 278 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~~-------~~~~~~~~~- 278 (1112)
+-++|.|-.|+|||+|+..+.++.....+ ..-+.++++-+++... +.++...+.+.=.... .+.......
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~-~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGE-EENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhcccc-CCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 46799999999999999998877542100 2357788898887653 4455555544311111 011111111
Q ss_pred ----HHHHHHHh---CCCcEEEEEeCC
Q 047598 279 ----QVDLKTAV---DGKRFLLVLDDV 298 (1112)
Q Consensus 279 ----~~~l~~~l---~~kr~LlVlDdv 298 (1112)
...+.+++ +++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 11234444 378999999998
No 434
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.67 E-value=0.069 Score=29.53 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=3.5
Q ss_pred CcEEEccccccc
Q 047598 617 LRYLNLADTMIR 628 (1112)
Q Consensus 617 Lr~L~Ls~n~i~ 628 (1112)
|+.|+|++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 333333333333
No 435
>PRK15453 phosphoribulokinase; Provisional
Probab=92.65 E-value=0.54 Score=49.43 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+|+|.|.+|+||||+|+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999987543
No 436
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.64 E-value=0.73 Score=46.59 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
-.+++|+|..|.|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999999864
No 437
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.59 E-value=0.092 Score=52.62 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
++++|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 489999999999999999998753
No 438
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.59 E-value=3 Score=44.56 Aligned_cols=59 Identities=7% Similarity=0.035 Sum_probs=38.8
Q ss_pred CCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC-hhhhhh-cCCCceeeCCCC
Q 047598 288 GKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH-SHVAST-MGPIKHYNLKRL 346 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~-~~~~~~~~l~~L 346 (1112)
+++=++|+|+++....+.+..+...+-...+++.+|++|.+ ..+... .+-...+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 55668899999888778888888777665567776666665 344333 223345566554
No 439
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.56 E-value=0.75 Score=48.76 Aligned_cols=89 Identities=12% Similarity=0.125 Sum_probs=47.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF-DVLSISKALLESITRKPCHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1112)
..+++++|.+|+||||+++.+......+ -..+.+++..... ....-++...+.++.......+...+...+...
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~-----~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l 149 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK-----KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYF 149 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc-----CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHH
Confidence 3699999999999999998886553211 1245556554322 122222333333332222223444444444332
Q ss_pred hC-CCcEEEEEeCCCC
Q 047598 286 VD-GKRFLLVLDDVWN 300 (1112)
Q Consensus 286 l~-~kr~LlVlDdv~~ 300 (1112)
-+ .+.=++++|..-.
T Consensus 150 ~~~~~~D~ViIDt~Gr 165 (270)
T PRK06731 150 KEEARVDYILIDTAGK 165 (270)
T ss_pred HhcCCCCEEEEECCCC
Confidence 12 2456788898744
No 440
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.46 E-value=0.087 Score=64.99 Aligned_cols=177 Identities=15% Similarity=0.082 Sum_probs=86.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccccc-----------ccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCC
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLN-----------AKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNT 274 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-----------~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~ 274 (1112)
..+++.|.|+.+.||||+.+.+.--.-.. ..-..|+. ++..++...++..-. .+
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~l--------------St 390 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSL--------------ST 390 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhch--------------hH
Confidence 45789999999999999998875331000 00012222 233333322222111 11
Q ss_pred hHHHHHHHHHHhC--CCcEEEEEeCCCCC-ChhhHHHH----HhcccCCCCCcEEEEEcCChhhhhhcCCCce---eeCC
Q 047598 275 LNEVQVDLKTAVD--GKRFLLVLDDVWNE-DYSLWVDL----KAPLLAAAPNSKMIITTRHSHVASTMGPIKH---YNLK 344 (1112)
Q Consensus 275 ~~~~~~~l~~~l~--~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~---~~l~ 344 (1112)
.......+...+. ..+-|+++|..-.. +...-..+ ...+. ..|+.+|+||...+++........ ..+.
T Consensus 391 fS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~ 468 (782)
T PRK00409 391 FSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE 468 (782)
T ss_pred HHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE
Confidence 1111122222222 47789999998643 22222223 22232 247899999999887665432111 1111
Q ss_pred CCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCCCHHHHHHHHh
Q 047598 345 RLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTTRCDLWEDILD 409 (1112)
Q Consensus 345 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~l~ 409 (1112)
++ ++... |..... .+.+. ...|-+|++++ |+|-.+.--|..+.......+..+++
T Consensus 469 -~d-~~~l~-~~Ykl~-~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~ 523 (782)
T PRK00409 469 -FD-EETLR-PTYRLL-IGIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIA 523 (782)
T ss_pred -Ee-cCcCc-EEEEEe-eCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHH
Confidence 11 11110 111111 11111 12466677766 78888888887776664445555544
No 441
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.45 E-value=1 Score=45.18 Aligned_cols=118 Identities=16% Similarity=0.087 Sum_probs=56.0
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHH
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKP---CHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~ 285 (1112)
++.|+|..|.||||+.+.+.-..... +.+.|- .... .. ......++..++... ...........++...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la-~~G~~v-----~a~~-~~-~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~ 72 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMA-QIGSFV-----PAES-AE-LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANI 72 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHH-HhCCCe-----eehh-eE-ecccceEEEEeCCCCchhccccHHHHHHHHHHHH
Confidence 47899999999999999887322110 001111 0000 00 000011111111110 0111222223334444
Q ss_pred hCC--CcEEEEEeCCCCCC-hhhH----HHHHhcccCCCCCcEEEEEcCChhhhhhc
Q 047598 286 VDG--KRFLLVLDDVWNED-YSLW----VDLKAPLLAAAPNSKMIITTRHSHVASTM 335 (1112)
Q Consensus 286 l~~--kr~LlVlDdv~~~~-~~~~----~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 335 (1112)
+.. ++-++++|..-... ...- ..+...+.. ..++.+|++|...++...+
T Consensus 73 l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 73 LKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred HHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 444 78999999985421 1111 122222322 2367899999988776654
No 442
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.44 E-value=0.44 Score=53.81 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+|.++|..|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998887644
No 443
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=3.9 Score=41.25 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=81.6
Q ss_pred cchhhHHHHHHHHhcCCC-C----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 182 GRDKDKARILKMVLSTDE-K----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~-~----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
|.+....+|.+.+.-+-. + .-+-.+.+=+.++|++|.|||-||++|++... .-|+.||.. +
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~----------c~firvsgs----e 216 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD----------CTFIRVSGS----E 216 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc----------eEEEEechH----H
Confidence 456667766665532110 0 01234456678999999999999999997643 234555543 2
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC--------------hhhHHHHHhcccCC--CCCc
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED--------------YSLWVDLKAPLLAA--APNS 320 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~~--~~gs 320 (1112)
+.+..+.. ...-..++.-.-+ ..-+-.|+.|.+++.. +...-.+...+..+ .+.-
T Consensus 217 lvqk~ige------gsrmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 217 LVQKYIGE------GSRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHHHhhh------hHHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 22222111 0011111111111 2346678888876421 11112233334332 2456
Q ss_pred EEEEEcCChhhhhhc-----CCCceeeCCCCChHhHHHHHHHhH
Q 047598 321 KMIITTRHSHVASTM-----GPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 321 ~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
+||..|..-++.... .....++..+-+++.-.++++-+.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 888888665554321 234567777777777777776554
No 444
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.42 E-value=1 Score=51.86 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=63.1
Q ss_pred eEEEEEEccCCCcHHH-HHHHHhccccccccCCCCceeEEEEeCCCCC--HHHHHHHHHHHhcCCCC----------CCC
Q 047598 207 FRVIPIVGMAGVGKTT-LAREVYNDKSLNAKDFKFDIKAWVCISDVFD--VLSISKALLESITRKPC----------HLN 273 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~----------~~~ 273 (1112)
.+||.|+|-.|+|||| ||+.+|.+-. ...-.+-+.++-. ...+.+.+.+.++.... +..
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~edGY--------~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT 442 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYEDGY--------ADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVT 442 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhccc--------ccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecC
Confidence 4699999999999996 6777887532 1112344455544 34566777777754321 111
Q ss_pred ChH----------HHHHHHHHHhCCCcEEEEEeCCCCCCh--hhHHHHHhcccCCCCCcEEEEEcCChh
Q 047598 274 TLN----------EVQVDLKTAVDGKRFLLVLDDVWNEDY--SLWVDLKAPLLAAAPNSKMIITTRHSH 330 (1112)
Q Consensus 274 ~~~----------~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~~~~gs~iivTTR~~~ 330 (1112)
+.+ -+.+.|....-.|--.||+|....... +....+..........-|+||||-..+
T Consensus 443 ~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 443 SEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD 511 (1042)
T ss_pred CCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc
Confidence 111 112223333334455889999865331 112122222223335679999997543
No 445
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.39 E-value=1.1 Score=46.49 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|..|.|||||++.+..-.
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4599999999999999999998653
No 446
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.37 E-value=0.28 Score=50.75 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.|.|+|++|+||||+|+.+....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998654
No 447
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.37 E-value=1.1 Score=48.72 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=35.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC-HHHHHHHH
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD-VLSISKAL 261 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 261 (1112)
..++|.|..|+|||+|++++.+.. .-+.++++-+++..+ +.+++.++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~-------~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS-------NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC-------CCCEEEEEEeCCChHHHHHHHHHH
Confidence 488999999999999999999863 235788888877653 34444443
No 448
>PRK13949 shikimate kinase; Provisional
Probab=92.36 E-value=0.097 Score=51.50 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHhcccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
-|.|+|+.|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998654
No 449
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.34 E-value=0.4 Score=49.95 Aligned_cols=77 Identities=19% Similarity=0.141 Sum_probs=41.9
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC--HHHHHHHHHHHh----cCCC--CCCCChHHHHH
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD--VLSISKALLESI----TRKP--CHLNTLNEVQV 280 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~il~~l----~~~~--~~~~~~~~~~~ 280 (1112)
+|+|.|.+|+||||+|+.+....... + ..++.++...-+. -...-..+..+. .-.. ++..+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~---g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~ 75 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE---G--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEE 75 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc---C--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHH
Confidence 58999999999999999887654321 1 1233333332222 112222222221 1111 35567777777
Q ss_pred HHHHHhCCCc
Q 047598 281 DLKTAVDGKR 290 (1112)
Q Consensus 281 ~l~~~l~~kr 290 (1112)
.++.+.+++.
T Consensus 76 ~l~~L~~g~~ 85 (277)
T cd02029 76 LFRTYGETGR 85 (277)
T ss_pred HHHHHHcCCC
Confidence 7777766553
No 450
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.33 E-value=0.089 Score=50.59 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
||.|.|.+|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 451
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.31 E-value=0.11 Score=49.53 Aligned_cols=20 Identities=45% Similarity=0.723 Sum_probs=18.7
Q ss_pred EEEEEccCCCcHHHHHHHHh
Q 047598 209 VIPIVGMAGVGKTTLAREVY 228 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~ 228 (1112)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 452
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.27 E-value=0.72 Score=52.15 Aligned_cols=85 Identities=27% Similarity=0.320 Sum_probs=48.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCCCChHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF-DVLSISKALLESITRKP-------CHLNTLNEV 278 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~~ 278 (1112)
-..++|+|..|+|||||++.+.+... .+..+++.+++.. .+.++..+....-.... .+.......
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~~-------~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAPD-------ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCCC-------CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 45889999999999999999987542 3445566666543 33344444432110000 011111111
Q ss_pred H-----HHHHHHh--CCCcEEEEEeCC
Q 047598 279 Q-----VDLKTAV--DGKRFLLVLDDV 298 (1112)
Q Consensus 279 ~-----~~l~~~l--~~kr~LlVlDdv 298 (1112)
. ..+.+++ +++++|+++||+
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 1 1233333 589999999999
No 453
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.27 E-value=0.13 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
....+|+|+|++|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999998754
No 454
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.26 E-value=0.44 Score=56.42 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=35.1
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
..++|....+.++++.+.... ..-.-|.|+|..|+||+++|+.++..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A------~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLA------MLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHh------CCCCCEEEECCCCccHHHHHHHHHHh
Confidence 368899888888877764311 12234789999999999999998764
No 455
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.25 E-value=0.51 Score=57.22 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=56.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPC-----HLNTLNEVQ 279 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~ 279 (1112)
..-+++-|+|.+|+||||||.+++.... ..-..++|+.....++.. .+++++.... .....++..
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~-----~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l 127 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQ-----AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQAL 127 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHH
Confidence 4567999999999999999977665432 123567899988877742 5666665431 223344455
Q ss_pred HHHHHHhC-CCcEEEEEeCCC
Q 047598 280 VDLKTAVD-GKRFLLVLDDVW 299 (1112)
Q Consensus 280 ~~l~~~l~-~kr~LlVlDdv~ 299 (1112)
..+...++ ++--|||+|.+-
T Consensus 128 ~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 128 EIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHHHhhcCCCeEEEEcchh
Confidence 55555443 456689999984
No 456
>PRK05973 replicative DNA helicase; Provisional
Probab=92.24 E-value=0.71 Score=47.76 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=30.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
.-.++.|.|.+|+|||++|.++...... .-..+++++....
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~-----~Ge~vlyfSlEes 103 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMK-----SGRTGVFFTLEYT 103 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEEeCC
Confidence 3468999999999999999988765431 1235677777655
No 457
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.24 E-value=0.11 Score=49.08 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=26.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD 250 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~ 250 (1112)
.+|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~----g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR----GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc----CCceEEEEEccC
Confidence 389999999999999999999876432 344444444443
No 458
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.21 E-value=0.13 Score=45.40 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVY 228 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~ 228 (1112)
-..++|+|..|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999986
No 459
>COG4240 Predicted kinase [General function prediction only]
Probab=92.20 E-value=0.39 Score=47.60 Aligned_cols=82 Identities=15% Similarity=0.060 Sum_probs=56.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcC-----CCCCCCChHHHH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITR-----KPCHLNTLNEVQ 279 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~-----~~~~~~~~~~~~ 279 (1112)
++.-+++|.|+-|+||||++..+++....+ +. ..++..+..+-+-..+-...++++... ..+...+..-..
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~k---g~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgl 123 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAK---GL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGL 123 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHh---cc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHH
Confidence 456799999999999999999999877544 22 467777777766666666667776421 223445666666
Q ss_pred HHHHHHhCCCc
Q 047598 280 VDLKTAVDGKR 290 (1112)
Q Consensus 280 ~~l~~~l~~kr 290 (1112)
..+....+++.
T Consensus 124 nVLnai~~g~~ 134 (300)
T COG4240 124 NVLNAIARGGP 134 (300)
T ss_pred HHHHHHhcCCC
Confidence 66666666653
No 460
>PRK13947 shikimate kinase; Provisional
Probab=92.18 E-value=0.1 Score=51.76 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
-|.|+|++|+||||+|+.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999988654
No 461
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.17 E-value=0.18 Score=58.27 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=23.8
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 204 DANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
..+..+|+|.|..|+||||||+.+...
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 346789999999999999999999864
No 462
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.16 E-value=0.1 Score=49.23 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+++|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998764
No 463
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.14 E-value=0.79 Score=51.85 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=50.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCH-HHHHHHHHHHhcCCC-------CCCCChHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDV-LSISKALLESITRKP-------CHLNTLNEV 278 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~il~~l~~~~-------~~~~~~~~~ 278 (1112)
-..++|+|..|+|||||++.+++... .+.++.+-+++...- .++....+..-+... .+.......
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~-------~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD-------ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-------CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 45889999999999999999987642 234555667665543 344444443322111 111111111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCC
Q 047598 279 -----QVDLKTAV--DGKRFLLVLDDV 298 (1112)
Q Consensus 279 -----~~~l~~~l--~~kr~LlVlDdv 298 (1112)
.-.+.+++ +++.+|+++||+
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 11233333 689999999999
No 464
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.11 E-value=0.75 Score=48.11 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=30.5
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
..-.++.|.|.+|+||||+|.++...... .-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-----~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLR-----DGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHh-----cCCeEEEEEccCC
Confidence 34579999999999999999887654321 1346788887554
No 465
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.07 E-value=0.73 Score=52.36 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=52.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCCCChHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF-DVLSISKALLESITRKP-------CHLNTLNEV 278 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~~ 278 (1112)
-+-++|.|.+|+|||||+..+....... +=+.++++-+++.. .+.++.+.+...-.... .+.......
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~----~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKE----HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc----CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 3578999999999999999886654321 11457777787665 34455555554321111 111111111
Q ss_pred -----HHHHHHHh---CCCcEEEEEeCC
Q 047598 279 -----QVDLKTAV---DGKRFLLVLDDV 298 (1112)
Q Consensus 279 -----~~~l~~~l---~~kr~LlVlDdv 298 (1112)
.-.+.+++ +++.+|+++||+
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecch
Confidence 12244444 789999999999
No 466
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.05 E-value=0.36 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEccCCCcHHHHHHHHhccc
Q 047598 210 IPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 210 v~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
|.|+|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998754
No 467
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.03 E-value=0.27 Score=53.26 Aligned_cols=61 Identities=11% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCChhhHH--HHHhcccC--CCCCcEEEEEcCChhhhhhcCCCce
Q 047598 279 QVDLKTAVDGKRFLLVLDDVWNEDYSLWV--DLKAPLLA--AAPNSKMIITTRHSHVASTMGPIKH 340 (1112)
Q Consensus 279 ~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~--~~~gs~iivTTR~~~v~~~~~~~~~ 340 (1112)
..+|.+.+..+.-+++.|.....- +... .+...+.. ...|+-+++.|+.+++.+...+...
T Consensus 515 R~KLAkllaerpn~~~iDEF~AhL-D~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 515 RAKLAKLLAERPNVLLIDEFAAHL-DELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred HHHHHHHHhcCCCcEEhhhhhhhc-CHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 446778888888888988874321 1111 12222221 1257788888888888887765543
No 468
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.02 E-value=0.14 Score=52.38 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.3
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 204 DANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
....+++.|+|++|+|||||++.+.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 346789999999999999999999754
No 469
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.02 E-value=1.4 Score=45.96 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|.|||||.+.+....
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 589999999999999999997654
No 470
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.00 E-value=0.13 Score=52.05 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
-.+++|+|..|+||||||+.+.-=
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcc
Confidence 358999999999999999998653
No 471
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.99 E-value=0.16 Score=50.87 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35799999999999999999998753
No 472
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.97 E-value=0.12 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997653
No 473
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.92 E-value=1.4 Score=45.70 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|..|.|||||++.+....
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3589999999999999999997653
No 474
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.92 E-value=0.12 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|+|+|+.|+||||||+.+....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 475
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.91 E-value=1.3 Score=46.45 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|..|+|||||.+.+..-.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3589999999999999999998654
No 476
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.90 E-value=0.83 Score=44.46 Aligned_cols=117 Identities=15% Similarity=-0.020 Sum_probs=59.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeE---EEEeCCCCCHHHHHHHHHH---HhcCCCC-CCCC------
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKA---WVCISDVFDVLSISKALLE---SITRKPC-HLNT------ 274 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~---wv~~~~~~~~~~~~~~il~---~l~~~~~-~~~~------ 274 (1112)
.+|-|++..|.||||.|..+.-+..- ..+ .++ |+.-.........++.+.- +.+.... ...+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~----~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALG----HGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHH----CCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHH
Confidence 57888888999999999665544321 111 222 2222212233333333200 0011000 0001
Q ss_pred -hHHHHHHHHHHhCCC-cEEEEEeCCCC---CChhhHHHHHhcccCCCCCcEEEEEcCCh
Q 047598 275 -LNEVQVDLKTAVDGK-RFLLVLDDVWN---EDYSLWVDLKAPLLAAAPNSKMIITTRHS 329 (1112)
Q Consensus 275 -~~~~~~~l~~~l~~k-r~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 329 (1112)
..+.....++.+... --++|||.+-. ......+++...+.....+.-||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 111222334455444 45999999842 12234456666666666677999999986
No 477
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.89 E-value=1.1 Score=45.37 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|.|..|.|||||.+.+..-.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998754
No 478
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.86 E-value=0.44 Score=52.96 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=45.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKT 284 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 284 (1112)
..+=+.|||..|.|||.|+-.+|+...++. ..-||. ....++-+.+.........+. .+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l~----~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPLP----QVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccHH----HHHH
Confidence 456689999999999999999999876521 112331 222232222222111222233 3444
Q ss_pred HhCCCcEEEEEeCCCCC
Q 047598 285 AVDGKRFLLVLDDVWNE 301 (1112)
Q Consensus 285 ~l~~kr~LlVlDdv~~~ 301 (1112)
.+.++..||.||...=.
T Consensus 123 ~l~~~~~lLcfDEF~V~ 139 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVT 139 (362)
T ss_pred HHHhcCCEEEEeeeecc
Confidence 55666779999987543
No 479
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.86 E-value=0.26 Score=51.20 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=39.8
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
+..++|..-.++.|+..+.+ -.......+.-|++.+|+.|+||.-+|+.++++..
T Consensus 81 ~~~lfGQHla~~~Vv~alk~-~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 81 ARALFGQHLAKQLVVNALKS-HWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred HHHhhchHHHHHHHHHHHHH-HhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 34577777777777776654 11111345677999999999999999999888754
No 480
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.81 E-value=0.89 Score=49.73 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
...+++++|++|+||||++..++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999998887654
No 481
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.72 E-value=0.15 Score=51.42 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998763
No 482
>PRK14530 adenylate kinase; Provisional
Probab=91.70 E-value=0.12 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.|.|+|++|+||||+|+.+....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998764
No 483
>PRK08149 ATP synthase SpaL; Validated
Probab=91.68 E-value=0.98 Score=51.04 Aligned_cols=85 Identities=22% Similarity=0.317 Sum_probs=49.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC-CCHHHHHHHHHHHhcCCC-------CCCCChHH-
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV-FDVLSISKALLESITRKP-------CHLNTLNE- 277 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~~-------~~~~~~~~- 277 (1112)
-..++|+|..|+|||||++.++.... -+.++...+... .++.++..+.+....... .+......
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~-------~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE-------ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC-------CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 45889999999999999999987542 233333444433 345555555555332211 11111111
Q ss_pred ----HHHHHHHHh--CCCcEEEEEeCC
Q 047598 278 ----VQVDLKTAV--DGKRFLLVLDDV 298 (1112)
Q Consensus 278 ----~~~~l~~~l--~~kr~LlVlDdv 298 (1112)
....+.+++ ++|++|+++||+
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccch
Confidence 111223333 589999999999
No 484
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.68 E-value=0.23 Score=53.80 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=35.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKA 260 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 260 (1112)
.+++.+.|.||+||||+|.+..-.... ....++=|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~-----~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE-----SGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH-----cCCcEEEEEeCCCCchHhhhcc
Confidence 479999999999999999885544332 2244777788777776665544
No 485
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.67 E-value=0.15 Score=46.91 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=20.1
Q ss_pred EEEEccCCCcHHHHHHHHhcccc
Q 047598 210 IPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 210 v~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999987654
No 486
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=91.65 E-value=0.21 Score=58.30 Aligned_cols=60 Identities=17% Similarity=0.326 Sum_probs=43.3
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEE
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVC 247 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~ 247 (1112)
..++--.+-++++..||...-. +....+++.+.|++|+||||.++.+++.. .|+.+=|..
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~---~~~~~~iLlLtGP~G~GKtttv~~La~el-------g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFS---GSSPKRILLLTGPSGCGKTTTVKVLAKEL-------GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhc---cCCCcceEEEECCCCCCHHHHHHHHHHHh-------CCeeEEecC
Confidence 3444556778888888865211 23346799999999999999999999874 356666754
No 487
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.62 E-value=1.3 Score=53.19 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.-..++|+|..|+|||||++.+..-..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999976553
No 488
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.60 E-value=0.17 Score=54.12 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=35.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
+.-+++.|+|.+|+|||++|.++..... ..+..++||+..+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~-----~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA-----REGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH-----hcCCcEEEEEecCCH
Confidence 4568999999999999999988877654 447789999998764
No 489
>PRK13975 thymidylate kinase; Provisional
Probab=91.59 E-value=0.15 Score=52.00 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.+|+|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999998754
No 490
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=91.58 E-value=1.7 Score=47.58 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|..|.|||||.+.+....
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998653
No 491
>PLN02348 phosphoribulokinase
Probab=91.58 E-value=0.33 Score=53.57 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=24.0
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...-+|+|.|.+|+||||+|+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998764
No 492
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.57 E-value=0.13 Score=49.85 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHhccc
Q 047598 210 IPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 210 v~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998764
No 493
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.55 E-value=1 Score=50.90 Aligned_cols=85 Identities=21% Similarity=0.222 Sum_probs=46.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC-CCCHHHHHHHHHHHhcCCC-------CCCCChHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD-VFDVLSISKALLESITRKP-------CHLNTLNEV 278 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~-------~~~~~~~~~ 278 (1112)
-..++|+|..|+|||||++.+...... +..+.+.+.+ ...+.++.+..+..-+... .+.......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~-------~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~ 212 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA-------DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRR 212 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC-------CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHH
Confidence 358999999999999999999876431 2222233333 3334444444443322111 111111111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCC
Q 047598 279 -----QVDLKTAV--DGKRFLLVLDDV 298 (1112)
Q Consensus 279 -----~~~l~~~l--~~kr~LlVlDdv 298 (1112)
...+.+++ +++.+|+++||+
T Consensus 213 ~a~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 213 QAAYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccch
Confidence 11233443 689999999998
No 494
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=1 Score=47.04 Aligned_cols=30 Identities=33% Similarity=0.392 Sum_probs=26.0
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcccccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLN 234 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 234 (1112)
.....++|||++|.|||-+|+.|+....+.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 456789999999999999999999877644
No 495
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=91.42 E-value=0.27 Score=61.78 Aligned_cols=139 Identities=16% Similarity=0.194 Sum_probs=70.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC----HH--HHHHHHHHHhcCCCCCCCChHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD----VL--SISKALLESITRKPCHLNTLNEVQV 280 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~----~~--~~~~~il~~l~~~~~~~~~~~~~~~ 280 (1112)
..-+.|+|.+|+||||+.+.+.-....+.. ..=+..+++.+..... .. .+..-+...+.... ...+...
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~-~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~~ 296 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTL-EPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLIE 296 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcC-CcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC----CcchhhH
Confidence 347899999999999998877654433210 1223444554431110 01 12222222222211 1111222
Q ss_pred HHHHHhCCCcEEEEEeCCCCCChhhHHHH---HhcccCCCCCcEEEEEcCChhhhhhcCCCceeeCCCCChHh
Q 047598 281 DLKTAVDGKRFLLVLDDVWNEDYSLWVDL---KAPLLAAAPNSKMIITTRHSHVASTMGPIKHYNLKRLLDED 350 (1112)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv~~~~~~~~~~l---~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~~ 350 (1112)
...+.++..++++++|.++......-... ...+...-+.+++|+|.|....-........+++..+.++.
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~ 369 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQ 369 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHH
Confidence 22567888999999999865332111111 11122333678999999876544333333444555555443
No 496
>PTZ00185 ATPase alpha subunit; Provisional
Probab=91.41 E-value=1.1 Score=51.02 Aligned_cols=93 Identities=23% Similarity=0.187 Sum_probs=53.8
Q ss_pred eEEEEEEccCCCcHHHHH-HHHhccccccc--cCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCC--h
Q 047598 207 FRVIPIVGMAGVGKTTLA-REVYNDKSLNA--KDFKFDIKAWVCISDVFDVLSISKALLESITRKP------CHLNT--L 275 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~--~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~------~~~~~--~ 275 (1112)
-+-++|.|..|+|||+|| ..+.++..+.. ....-+.++++-+++..+...-+.+.+++-+.-. ...++ .
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 356899999999999997 66666642210 0023457788999887755444444454443111 01111 1
Q ss_pred HHH-----HHHHHHHh--CCCcEEEEEeCCC
Q 047598 276 NEV-----QVDLKTAV--DGKRFLLVLDDVW 299 (1112)
Q Consensus 276 ~~~-----~~~l~~~l--~~kr~LlVlDdv~ 299 (1112)
.+. ...+.+++ +++..|+|+||+-
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 111 11123333 5899999999994
No 497
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=91.41 E-value=0.25 Score=58.68 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=35.3
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
+..+.|.+..+.|.+.... ......+|.|+|+.|+||||+|+.++....
T Consensus 369 P~~f~rpeV~~iL~~~~~~------r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPP------RHKQGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred ChhhcHHHHHHHHHHHhcc------ccCCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 4456676666655555533 223455899999999999999999998654
No 498
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=91.40 E-value=1.3 Score=46.69 Aligned_cols=85 Identities=22% Similarity=0.232 Sum_probs=47.2
Q ss_pred eEEEEEEccCCCcHHHHH-HHHhccccccccCCCCcee-EEEEeCCCCC-HHHHHHHHHHHhcCCC-------CCCCChH
Q 047598 207 FRVIPIVGMAGVGKTTLA-REVYNDKSLNAKDFKFDIK-AWVCISDVFD-VLSISKALLESITRKP-------CHLNTLN 276 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~~~F~~~-~wv~~~~~~~-~~~~~~~il~~l~~~~-------~~~~~~~ 276 (1112)
-+-++|.|..|+|||+|| ..+.+.. .-+.+ +++-+++... +.++.+.+.+.-.... .+.....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~-------~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~ 141 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK-------GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPL 141 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc-------CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhH
Confidence 347899999999999996 6666542 12333 6677776643 4455555543211110 1111111
Q ss_pred HH-----HHHHHHHh--CCCcEEEEEeCC
Q 047598 277 EV-----QVDLKTAV--DGKRFLLVLDDV 298 (1112)
Q Consensus 277 ~~-----~~~l~~~l--~~kr~LlVlDdv 298 (1112)
.. .-.+.+++ +++.+|+++||+
T Consensus 142 r~~a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 142 QYLAPYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 10 11122222 589999999999
No 499
>CHL00206 ycf2 Ycf2; Provisional
Probab=91.40 E-value=1.7 Score=57.06 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=23.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSL 233 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 233 (1112)
..+=|-++|++|.|||.||++++.+..+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 3456779999999999999999988653
No 500
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.38 E-value=0.85 Score=45.77 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...++.|.|.+|+||||+|+.+....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998754
Done!