Query 047598
Match_columns 1112
No_of_seqs 674 out of 4546
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 22:38:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.7E-47 1.9E-51 450.3 23.8 316 181-522 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.3E-38 4.5E-43 377.2 20.5 284 179-513 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 5.2E-37 1.8E-41 408.4 24.6 315 172-520 118-452 (1249)
4 3rgz_A Protein brassinosteroid 100.0 3E-37 1E-41 384.7 16.3 469 589-1095 197-766 (768)
5 3rgz_A Protein brassinosteroid 100.0 6E-35 2.1E-39 363.9 23.2 461 590-1101 176-716 (768)
6 3vq2_A TLR4, TOLL-like recepto 100.0 8E-33 2.7E-37 337.6 30.5 490 535-1073 32-558 (606)
7 1z6t_A APAF-1, apoptotic prote 100.0 1.9E-33 6.6E-38 340.6 23.8 305 176-518 122-450 (591)
8 3t6q_A CD180 antigen; protein- 100.0 1.6E-32 5.4E-37 335.0 26.5 492 534-1073 32-560 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 2.6E-31 8.9E-36 328.8 33.6 519 534-1101 24-621 (680)
10 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-31 4.3E-36 331.6 30.0 484 534-1074 48-623 (680)
11 3t6q_A CD180 antigen; protein- 100.0 2.2E-31 7.7E-36 324.8 31.1 495 560-1102 33-560 (606)
12 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-31 3.6E-36 327.7 28.0 476 560-1102 32-558 (606)
13 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-30 1.1E-34 324.6 33.7 494 533-1073 22-560 (844)
14 4eco_A Uncharacterized protein 100.0 3.7E-31 1.3E-35 321.7 19.6 205 777-999 353-577 (636)
15 4ecn_A Leucine-rich repeat pro 100.0 1.2E-30 4.1E-35 321.0 21.8 333 602-999 435-817 (876)
16 2z63_A TOLL-like receptor 4, v 100.0 3.1E-30 1.1E-34 312.6 24.6 144 535-688 28-175 (570)
17 2z81_A CD282 antigen, TOLL-lik 100.0 5.2E-30 1.8E-34 308.8 23.4 105 592-697 26-134 (549)
18 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-29 1.4E-33 314.6 31.8 477 558-1100 22-558 (844)
19 4eco_A Uncharacterized protein 100.0 7.5E-30 2.6E-34 310.2 22.8 353 625-1073 193-600 (636)
20 4ecn_A Leucine-rich repeat pro 100.0 6E-29 2.1E-33 305.9 28.2 263 775-1073 546-840 (876)
21 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-29 5.4E-34 304.7 21.1 146 560-714 26-177 (549)
22 2z7x_B TOLL-like receptor 1, v 100.0 4.8E-29 1.7E-33 297.9 22.5 438 560-1073 21-481 (520)
23 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-27 6.5E-32 284.1 27.7 434 592-1102 21-481 (520)
24 2z63_A TOLL-like receptor 4, v 100.0 7.7E-28 2.6E-32 291.6 23.5 466 534-1054 51-535 (570)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-26 3.9E-31 279.5 25.8 404 592-1073 52-510 (562)
26 4g8a_A TOLL-like receptor 4; l 99.9 2.6E-26 8.9E-31 282.5 28.6 473 561-1073 53-580 (635)
27 1o6v_A Internalin A; bacterial 99.9 9.5E-26 3.3E-30 264.5 26.3 100 592-697 46-145 (466)
28 1jl5_A Outer protein YOPM; leu 99.9 1.4E-25 4.8E-30 260.0 25.0 368 591-1073 10-409 (454)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.6E-25 1.2E-29 266.4 23.9 436 560-1053 52-513 (562)
30 3v47_A TOLL-like receptor 5B a 99.9 3.6E-25 1.2E-29 259.8 19.3 366 592-1055 30-413 (455)
31 3bz5_A Internalin-J, INLJ; leu 99.9 6.1E-25 2.1E-29 254.9 19.7 207 588-836 38-244 (457)
32 1o6v_A Internalin A; bacterial 99.9 1.4E-24 4.8E-29 254.6 22.1 342 559-999 45-386 (466)
33 1jl5_A Outer protein YOPM; leu 99.9 1E-23 3.6E-28 244.3 25.3 401 537-1072 13-428 (454)
34 4g8a_A TOLL-like receptor 4; l 99.9 1E-23 3.5E-28 259.4 23.9 461 592-1101 52-579 (635)
35 3v47_A TOLL-like receptor 5B a 99.9 2.5E-24 8.7E-29 252.5 17.6 359 560-999 30-406 (455)
36 4fmz_A Internalin; leucine ric 99.9 1.3E-23 4.3E-28 236.8 20.7 102 588-695 40-141 (347)
37 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-23 6.7E-28 242.2 19.3 358 608-1069 35-408 (457)
38 2id5_A Lingo-1, leucine rich r 99.9 2.3E-22 7.9E-27 237.0 27.0 287 595-999 14-307 (477)
39 3o6n_A APL1; leucine-rich repe 99.9 5.5E-23 1.9E-27 235.3 19.9 215 558-837 43-260 (390)
40 3oja_B Anopheles plasmodium-re 99.9 1.3E-22 4.6E-27 245.1 19.6 236 558-864 49-287 (597)
41 2id5_A Lingo-1, leucine rich r 99.9 6E-22 2.1E-26 233.5 23.8 292 592-972 32-330 (477)
42 3oja_B Anopheles plasmodium-re 99.9 7.5E-22 2.6E-26 238.6 22.8 105 590-696 49-157 (597)
43 3o6n_A APL1; leucine-rich repe 99.9 3.1E-22 1.1E-26 229.1 17.9 303 590-999 43-350 (390)
44 4fmz_A Internalin; leucine ric 99.9 3.9E-22 1.3E-26 224.6 17.6 304 556-972 40-343 (347)
45 1xku_A Decorin; proteoglycan, 99.9 7.2E-21 2.4E-25 212.3 23.0 288 592-998 31-329 (330)
46 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-20 3.9E-25 210.7 21.1 192 592-835 33-227 (332)
47 4fcg_A Uncharacterized protein 99.9 5.4E-21 1.9E-25 211.9 17.8 92 591-683 80-171 (328)
48 4fcg_A Uncharacterized protein 99.8 1.1E-19 3.8E-24 201.4 18.2 208 613-898 79-287 (328)
49 1ogq_A PGIP-2, polygalacturona 99.8 2.1E-20 7.3E-25 205.9 8.8 113 586-698 70-186 (313)
50 1ogq_A PGIP-2, polygalacturona 99.8 1.9E-20 6.6E-25 206.3 7.7 250 592-903 50-306 (313)
51 3ogk_B Coronatine-insensitive 99.8 1.3E-21 4.3E-26 238.0 -5.7 384 555-999 68-499 (592)
52 3g06_A SSPH2 (leucine-rich rep 99.8 4.4E-18 1.5E-22 202.8 24.9 92 592-696 40-131 (622)
53 1xku_A Decorin; proteoglycan, 99.8 8.8E-19 3E-23 195.3 17.6 103 592-698 52-157 (330)
54 2ft3_A Biglycan; proteoglycan, 99.8 9.1E-19 3.1E-23 195.3 17.6 214 592-835 54-274 (332)
55 1z7x_W Ribonuclease inhibitor; 99.8 6.6E-22 2.3E-26 232.4 -15.2 67 931-999 333-409 (461)
56 3zyi_A Leucine-rich repeat-con 99.7 3.9E-17 1.3E-21 190.4 22.3 242 780-1072 57-302 (452)
57 2z80_A TOLL-like receptor 2, v 99.7 7.9E-18 2.7E-22 189.4 15.8 99 590-692 29-130 (353)
58 3zyj_A Leucine-rich repeat-con 99.7 4E-17 1.4E-21 189.5 22.1 243 779-1072 45-291 (440)
59 3g06_A SSPH2 (leucine-rich rep 99.7 6.9E-17 2.4E-21 192.5 23.9 92 592-697 61-152 (622)
60 2z80_A TOLL-like receptor 2, v 99.7 2.7E-18 9.3E-23 193.2 11.3 198 592-835 52-259 (353)
61 2z66_A Variable lymphocyte rec 99.7 4.5E-18 1.5E-22 187.4 12.8 103 592-696 28-136 (306)
62 1z7x_W Ribonuclease inhibitor; 99.7 1.4E-20 4.8E-25 221.1 -10.4 105 592-697 3-124 (461)
63 3ogk_B Coronatine-insensitive 99.7 1.8E-19 6.1E-24 219.1 -2.6 397 583-1048 64-524 (592)
64 3zyi_A Leucine-rich repeat-con 99.7 1.1E-16 3.7E-21 186.6 19.3 101 592-694 75-179 (452)
65 3zyj_A Leucine-rich repeat-con 99.7 1.4E-16 4.7E-21 185.0 20.0 101 592-694 64-168 (440)
66 1ozn_A Reticulon 4 receptor; N 99.7 2.1E-17 7.2E-22 179.8 12.2 96 595-693 14-112 (285)
67 2p1m_B Transport inhibitor res 99.7 4.7E-20 1.6E-24 224.4 -10.8 263 554-864 60-347 (594)
68 2z66_A Variable lymphocyte rec 99.7 3.7E-17 1.3E-21 180.0 13.0 129 560-697 28-161 (306)
69 3o53_A Protein LRIM1, AGAP0063 99.7 2E-18 6.7E-23 190.8 0.3 256 583-908 25-282 (317)
70 3o53_A Protein LRIM1, AGAP0063 99.7 6E-18 2.1E-22 186.9 2.7 245 556-869 30-276 (317)
71 1ozn_A Reticulon 4 receptor; N 99.7 4.8E-17 1.7E-21 177.0 9.3 202 592-838 32-238 (285)
72 1wwl_A Monocyte differentiatio 99.6 1.5E-16 5.2E-21 175.2 9.7 103 594-697 65-184 (312)
73 1wwl_A Monocyte differentiatio 99.6 3.1E-17 1E-21 180.8 3.1 249 587-902 38-309 (312)
74 3oja_A Leucine-rich immune mol 99.6 7.9E-17 2.7E-21 188.5 6.3 237 590-897 32-271 (487)
75 2p1m_B Transport inhibitor res 99.6 4.3E-19 1.5E-23 215.9 -16.3 132 557-695 102-244 (594)
76 2z62_A TOLL-like receptor 4, v 99.6 2.6E-15 8.9E-20 162.4 14.8 203 592-837 28-236 (276)
77 1h6u_A Internalin H; cell adhe 99.6 1E-15 3.5E-20 167.9 10.8 191 589-836 38-228 (308)
78 3oja_A Leucine-rich immune mol 99.6 8.4E-17 2.9E-21 188.3 2.1 230 613-915 32-264 (487)
79 3rfs_A Internalin B, repeat mo 99.6 2.6E-15 8.8E-20 161.7 13.1 105 588-696 37-143 (272)
80 1p9a_G Platelet glycoprotein I 99.6 5E-15 1.7E-19 160.6 15.3 103 589-696 7-110 (290)
81 2o6q_A Variable lymphocyte rec 99.6 1.4E-14 4.9E-19 155.7 17.0 100 593-696 17-119 (270)
82 3qfl_A MLA10; coiled-coil, (CC 99.6 5E-16 1.7E-20 139.0 4.5 79 13-93 3-83 (115)
83 4ay9_X Follicle-stimulating ho 99.6 2.2E-14 7.6E-19 160.6 19.1 103 595-700 12-118 (350)
84 2z62_A TOLL-like receptor 4, v 99.6 8.4E-15 2.9E-19 158.3 14.3 219 596-903 11-238 (276)
85 1w5s_A Origin recognition comp 99.6 1.9E-14 6.6E-19 165.8 17.7 318 178-509 22-387 (412)
86 2xwt_C Thyrotropin receptor; s 99.6 1.6E-14 5.6E-19 152.2 15.0 193 593-865 32-236 (239)
87 2qen_A Walker-type ATPase; unk 99.6 8.3E-14 2.9E-18 156.6 21.8 291 176-514 10-349 (350)
88 2xwt_C Thyrotropin receptor; s 99.6 4.9E-14 1.7E-18 148.5 18.4 208 789-1072 23-238 (239)
89 4ay9_X Follicle-stimulating ho 99.6 7E-14 2.4E-18 156.5 19.9 235 781-1045 13-254 (350)
90 2ast_B S-phase kinase-associat 99.5 2.9E-16 1E-20 175.6 -1.7 234 592-910 70-314 (336)
91 1p9a_G Platelet glycoprotein I 99.5 3.6E-14 1.2E-18 153.8 14.1 200 556-837 6-207 (290)
92 2fna_A Conserved hypothetical 99.5 4.1E-13 1.4E-17 151.4 21.1 289 176-512 11-355 (357)
93 1h6u_A Internalin H; cell adhe 99.5 3E-14 1E-18 156.1 10.6 193 558-816 39-231 (308)
94 3rfs_A Internalin B, repeat mo 99.5 8.1E-14 2.8E-18 149.9 13.7 128 556-696 37-167 (272)
95 4glp_A Monocyte differentiatio 99.5 5.2E-14 1.8E-18 154.8 12.4 204 591-836 90-305 (310)
96 2o6q_A Variable lymphocyte rec 99.5 2E-12 6.9E-17 138.8 19.8 196 778-999 17-216 (270)
97 2ca6_A RAN GTPase-activating p 99.5 2.2E-15 7.4E-20 171.8 -3.8 88 586-674 26-134 (386)
98 3m19_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 139.2 16.7 172 592-836 14-190 (251)
99 4glp_A Monocyte differentiatio 99.4 1.1E-13 3.8E-18 152.2 8.7 202 801-1072 90-306 (310)
100 1h6t_A Internalin B; cell adhe 99.4 1.5E-13 5.1E-18 149.1 9.3 104 588-697 42-145 (291)
101 2ca6_A RAN GTPase-activating p 99.4 1.3E-15 4.3E-20 173.7 -7.5 270 593-903 10-317 (386)
102 1m9s_A Internalin B; cell inva 99.4 2.2E-13 7.7E-18 162.1 9.7 103 588-696 39-141 (605)
103 3cvr_A Invasion plasmid antige 99.4 7.4E-13 2.5E-17 155.6 12.4 182 593-843 60-248 (571)
104 2ast_B S-phase kinase-associat 99.4 4.8E-14 1.6E-18 157.5 -0.1 128 560-696 70-205 (336)
105 2v1u_A Cell division control p 99.4 7.4E-11 2.5E-15 134.5 25.7 296 178-496 19-351 (387)
106 1xeu_A Internalin C; cellular 99.3 5.5E-13 1.9E-17 142.1 6.7 100 590-696 17-116 (263)
107 4ezg_A Putative uncharacterize 99.3 1.2E-12 4.2E-17 133.0 7.3 104 591-696 43-146 (197)
108 3m19_A Variable lymphocyte rec 99.3 3E-11 1E-15 128.1 17.3 172 779-999 16-190 (251)
109 2v9t_B SLIT homolog 2 protein 99.3 1.2E-11 4.3E-16 127.7 13.7 97 595-695 14-113 (220)
110 3cvr_A Invasion plasmid antige 99.3 5E-12 1.7E-16 148.6 11.9 187 561-819 60-247 (571)
111 2qby_B CDC6 homolog 3, cell di 99.3 1.4E-10 4.8E-15 131.9 23.5 297 178-497 20-340 (384)
112 2ell_A Acidic leucine-rich nuc 99.3 5.3E-12 1.8E-16 124.6 10.1 133 559-701 23-162 (168)
113 1m9s_A Internalin B; cell inva 99.3 1.3E-12 4.5E-17 155.5 6.5 188 592-836 21-208 (605)
114 1h6t_A Internalin B; cell adhe 99.3 5.3E-12 1.8E-16 136.8 10.4 128 557-700 43-170 (291)
115 3goz_A Leucine-rich repeat-con 99.3 1.6E-13 5.4E-18 154.5 -3.1 109 587-697 17-149 (362)
116 1fnn_A CDC6P, cell division co 99.3 5.9E-10 2E-14 127.0 26.0 297 178-497 17-352 (389)
117 3goz_A Leucine-rich repeat-con 99.3 1.6E-13 5.6E-18 154.4 -3.7 100 597-697 3-120 (362)
118 4ezg_A Putative uncharacterize 99.3 2E-11 6.8E-16 124.0 12.0 148 535-698 44-193 (197)
119 2qby_A CDC6 homolog 1, cell di 99.3 1E-10 3.4E-15 133.4 18.7 296 178-496 20-348 (386)
120 2o6s_A Variable lymphocyte rec 99.2 3.6E-11 1.2E-15 123.4 13.4 94 596-693 11-107 (208)
121 2v70_A SLIT-2, SLIT homolog 2 99.2 2.7E-11 9.3E-16 125.1 12.5 97 595-695 14-114 (220)
122 2v70_A SLIT-2, SLIT homolog 2 99.2 2E-11 6.9E-16 126.1 11.4 131 561-699 33-166 (220)
123 2v9t_B SLIT homolog 2 protein 99.2 2.1E-11 7.1E-16 126.0 11.1 129 560-698 32-164 (220)
124 1xeu_A Internalin C; cellular 99.2 1E-11 3.5E-16 132.2 9.0 105 588-699 37-141 (263)
125 3e6j_A Variable lymphocyte rec 99.2 2.5E-11 8.5E-16 126.4 10.8 129 560-698 40-171 (229)
126 2ell_A Acidic leucine-rich nuc 99.2 1.6E-11 5.5E-16 121.1 7.3 108 591-701 23-135 (168)
127 2je0_A Acidic leucine-rich nuc 99.2 1.1E-11 3.7E-16 119.6 5.9 104 587-693 37-147 (149)
128 1a9n_A U2A', U2A'; complex (nu 99.2 2E-11 6.7E-16 121.5 7.5 130 556-697 15-151 (176)
129 3e6j_A Variable lymphocyte rec 99.2 5.3E-11 1.8E-15 123.9 10.5 108 592-701 40-150 (229)
130 1njg_A DNA polymerase III subu 99.2 4.8E-10 1.6E-14 118.7 18.2 196 178-395 23-230 (250)
131 2je0_A Acidic leucine-rich nuc 99.2 1.1E-11 3.9E-16 119.4 4.7 122 590-714 15-145 (149)
132 2xot_A Amphoterin-induced prot 99.2 4.8E-11 1.6E-15 133.9 10.3 99 595-697 21-123 (361)
133 4b8c_D Glucose-repressible alc 99.1 2.7E-11 9.3E-16 148.3 7.7 116 583-700 215-330 (727)
134 2o6s_A Variable lymphocyte rec 99.1 1.4E-10 4.8E-15 119.0 11.8 128 560-697 28-159 (208)
135 1a9n_A U2A', U2A'; complex (nu 99.1 2.9E-11 9.8E-16 120.2 5.8 110 588-701 15-128 (176)
136 1dce_A Protein (RAB geranylger 99.1 7.7E-11 2.6E-15 139.5 8.0 105 593-701 442-548 (567)
137 4b8c_D Glucose-repressible alc 99.1 2.1E-11 7.3E-16 149.2 2.7 116 597-714 206-321 (727)
138 2chg_A Replication factor C sm 99.1 2.8E-09 9.7E-14 110.8 18.3 187 177-393 16-204 (226)
139 1w8a_A SLIT protein; signaling 99.1 2.4E-10 8.2E-15 115.2 9.0 106 593-699 30-139 (192)
140 2xot_A Amphoterin-induced prot 99.1 1.4E-10 5E-15 130.0 8.0 104 594-698 41-148 (361)
141 2wfh_A SLIT homolog 2 protein 99.0 4.5E-10 1.5E-14 113.1 10.1 104 592-697 31-137 (193)
142 2wfh_A SLIT homolog 2 protein 99.0 4.1E-10 1.4E-14 113.4 9.5 116 595-714 13-131 (193)
143 2r9u_A Variable lymphocyte rec 99.0 3.3E-10 1.1E-14 111.9 8.5 103 595-701 15-120 (174)
144 1w8a_A SLIT protein; signaling 99.0 5E-10 1.7E-14 112.9 9.4 103 595-700 11-116 (192)
145 1dce_A Protein (RAB geranylger 99.0 3.9E-10 1.3E-14 133.5 9.9 119 561-692 442-566 (567)
146 1ds9_A Outer arm dynein; leuci 99.0 3.4E-12 1.2E-16 129.7 -6.8 108 587-698 43-152 (198)
147 3sb4_A Hypothetical leucine ri 99.0 3.9E-09 1.3E-13 116.7 14.8 96 591-692 48-154 (329)
148 1hqc_A RUVB; extended AAA-ATPa 99.0 2.2E-09 7.6E-14 118.6 12.8 267 178-495 12-324 (324)
149 3g39_A Variable lymphocyte rec 99.0 9.8E-10 3.4E-14 108.1 8.8 103 594-700 11-116 (170)
150 3sb4_A Hypothetical leucine ri 98.9 1.8E-09 6.2E-14 119.4 7.9 285 591-915 24-323 (329)
151 1sxj_B Activator 1 37 kDa subu 98.9 1.8E-08 6.3E-13 111.2 16.0 188 177-394 20-211 (323)
152 2o6r_A Variable lymphocyte rec 98.9 4.8E-09 1.6E-13 104.2 9.9 106 592-699 28-137 (177)
153 1ds9_A Outer arm dynein; leuci 98.9 9.1E-11 3.1E-15 119.2 -3.2 126 555-692 43-180 (198)
154 2r9u_A Variable lymphocyte rec 98.8 3.3E-09 1.1E-13 104.7 7.4 89 592-682 33-124 (174)
155 2o6r_A Variable lymphocyte rec 98.8 2E-08 7E-13 99.6 10.3 104 594-701 9-115 (177)
156 3g39_A Variable lymphocyte rec 98.7 2E-08 6.8E-13 98.7 8.5 81 592-673 30-113 (170)
157 1iqp_A RFCS; clamp loader, ext 98.7 1.4E-07 4.9E-12 104.2 14.0 184 178-394 25-213 (327)
158 3te6_A Regulatory protein SIR3 98.6 6.8E-07 2.3E-11 95.5 17.1 175 179-361 21-213 (318)
159 2ifg_A High affinity nerve gro 98.6 6.1E-08 2.1E-12 108.1 8.6 99 597-698 13-115 (347)
160 4fs7_A Uncharacterized protein 98.5 2.1E-06 7.2E-11 97.3 19.8 59 586-646 65-125 (394)
161 4fdw_A Leucine rich hypothetic 98.5 1.2E-06 4E-11 98.8 16.9 104 583-693 127-233 (401)
162 1jr3_A DNA polymerase III subu 98.5 1.8E-06 6.3E-11 97.2 17.5 195 178-393 16-221 (373)
163 4fs7_A Uncharacterized protein 98.5 6.3E-06 2.2E-10 93.3 20.8 124 554-693 65-192 (394)
164 4fdw_A Leucine rich hypothetic 98.5 4.7E-06 1.6E-10 93.9 19.3 250 589-912 110-368 (401)
165 2ifg_A High affinity nerve gro 98.4 3E-07 1E-11 102.5 9.1 85 588-673 27-114 (347)
166 2chq_A Replication factor C sm 98.4 2.2E-06 7.6E-11 94.2 15.4 181 178-392 17-203 (319)
167 3pfi_A Holliday junction ATP-d 98.3 2.1E-05 7.1E-10 87.0 19.3 178 177-392 28-226 (338)
168 3bos_A Putative DNA replicatio 98.2 1.8E-06 6.2E-11 90.5 8.3 173 178-392 28-216 (242)
169 1sxj_A Activator 1 95 kDa subu 98.2 9.9E-06 3.4E-10 94.7 14.1 202 177-395 38-255 (516)
170 2z4s_A Chromosomal replication 98.2 1.5E-05 5E-10 90.9 15.2 182 207-410 130-331 (440)
171 1jbk_A CLPB protein; beta barr 98.2 3.2E-06 1.1E-10 85.0 8.6 46 178-231 22-67 (195)
172 1sxj_D Activator 1 41 kDa subu 98.2 1.3E-05 4.5E-10 89.4 14.2 195 178-392 37-234 (353)
173 3pvs_A Replication-associated 98.1 4.2E-05 1.5E-09 86.8 17.5 176 178-390 26-212 (447)
174 1sxj_E Activator 1 40 kDa subu 98.1 2.9E-05 9.9E-10 86.5 15.7 199 178-393 14-237 (354)
175 3h4m_A Proteasome-activating n 98.1 3.5E-05 1.2E-09 82.8 15.6 186 177-390 16-228 (285)
176 3uk6_A RUVB-like 2; hexameric 98.0 6.6E-05 2.2E-09 84.1 16.4 194 177-390 43-300 (368)
177 3syl_A Protein CBBX; photosynt 98.0 4.1E-05 1.4E-09 83.4 14.1 162 179-361 32-219 (309)
178 3u61_B DNA polymerase accessor 98.0 6.3E-05 2.2E-09 82.5 14.8 177 177-388 25-211 (324)
179 2qz4_A Paraplegin; AAA+, SPG7, 97.9 0.0001 3.6E-09 77.9 15.4 183 178-386 6-214 (262)
180 3un9_A NLR family member X1; l 97.9 2.4E-07 8.2E-12 103.4 -5.6 104 592-696 72-193 (372)
181 1d2n_A N-ethylmaleimide-sensit 97.9 0.0001 3.6E-09 78.3 15.3 195 179-409 34-259 (272)
182 1a5t_A Delta prime, HOLB; zinc 97.9 0.00021 7E-09 78.4 17.9 176 184-393 8-205 (334)
183 4gt6_A Cell surface protein; l 97.9 0.00023 7.9E-09 80.4 18.8 87 583-672 78-170 (394)
184 3un9_A NLR family member X1; l 97.9 9.3E-07 3.2E-11 98.6 -2.0 109 589-698 123-251 (372)
185 3n70_A Transport activator; si 97.9 2.9E-05 9.9E-10 73.5 8.2 114 179-328 2-115 (145)
186 1l8q_A Chromosomal replication 97.9 7.3E-05 2.5E-09 81.9 12.6 153 207-386 37-201 (324)
187 3eie_A Vacuolar protein sortin 97.9 0.00014 4.7E-09 79.4 14.6 188 178-393 18-228 (322)
188 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00063 2.1E-08 73.9 19.6 190 178-393 12-223 (322)
189 3e4g_A ATP synthase subunit S, 97.8 1.3E-05 4.5E-10 77.0 4.2 93 802-903 61-154 (176)
190 2qp9_X Vacuolar protein sortin 97.8 0.00028 9.6E-09 77.9 15.3 189 178-393 51-261 (355)
191 1sxj_C Activator 1 40 kDa subu 97.8 0.00031 1E-08 77.4 15.5 181 178-389 25-208 (340)
192 3d8b_A Fidgetin-like protein 1 97.7 0.00053 1.8E-08 75.8 15.9 189 178-394 84-296 (357)
193 3rw6_A Nuclear RNA export fact 97.7 6.7E-06 2.3E-10 85.7 0.3 104 588-693 137-258 (267)
194 4gt6_A Cell surface protein; l 97.7 0.0011 3.6E-08 74.9 18.5 36 1035-1072 332-369 (394)
195 3b9p_A CG5977-PA, isoform A; A 97.7 0.00087 3E-08 72.3 16.9 185 178-392 21-232 (297)
196 2p65_A Hypothetical protein PF 97.6 6.4E-05 2.2E-09 74.8 7.2 46 178-231 22-67 (187)
197 3e4g_A ATP synthase subunit S, 97.6 3.1E-05 1.1E-09 74.4 4.5 38 1037-1074 114-153 (176)
198 2ra8_A Uncharacterized protein 97.6 2.8E-05 9.5E-10 85.8 4.4 36 801-836 278-318 (362)
199 3rw6_A Nuclear RNA export fact 97.6 2.9E-05 9.8E-10 80.9 4.0 79 589-668 167-257 (267)
200 1in4_A RUVB, holliday junction 97.6 0.0051 1.7E-07 67.2 22.0 176 178-391 25-221 (334)
201 3cf0_A Transitional endoplasmi 97.6 0.0013 4.4E-08 70.8 17.0 181 178-386 15-221 (301)
202 2ra8_A Uncharacterized protein 97.6 2.7E-05 9.2E-10 85.9 3.3 38 1035-1072 277-319 (362)
203 4h09_A Hypothetical leucine ri 97.6 0.0053 1.8E-07 68.7 22.3 69 937-1013 284-354 (379)
204 1io0_A Tropomodulin; LRR prote 97.5 1E-05 3.5E-10 80.3 -0.4 85 588-673 32-134 (185)
205 3vfd_A Spastin; ATPase, microt 97.5 0.00087 3E-08 75.2 15.5 190 177-393 114-326 (389)
206 3ec2_A DNA replication protein 97.5 0.00013 4.5E-09 72.0 7.7 102 207-328 38-142 (180)
207 2zan_A Vacuolar protein sortin 97.5 0.0013 4.5E-08 74.9 16.6 190 178-393 134-345 (444)
208 2gno_A DNA polymerase III, gam 97.5 0.00066 2.2E-08 72.7 13.0 150 182-359 1-152 (305)
209 2w58_A DNAI, primosome compone 97.5 6.8E-05 2.3E-09 75.7 4.7 100 208-328 55-158 (202)
210 1io0_A Tropomodulin; LRR prote 97.4 4.5E-05 1.5E-09 75.6 2.8 114 555-673 31-162 (185)
211 3co5_A Putative two-component 97.4 0.00012 4.2E-09 68.9 5.1 110 179-328 5-115 (143)
212 3pxg_A Negative regulator of g 97.4 0.00034 1.2E-08 80.4 9.8 150 178-359 180-338 (468)
213 3hu3_A Transitional endoplasmi 97.4 0.001 3.4E-08 76.3 13.3 187 178-392 204-414 (489)
214 1qvr_A CLPB protein; coiled co 97.4 0.00028 9.5E-09 87.9 9.4 157 178-358 170-344 (854)
215 4fcw_A Chaperone protein CLPB; 97.3 0.00069 2.4E-08 73.6 10.3 138 179-328 18-169 (311)
216 2bjv_A PSP operon transcriptio 97.3 0.00053 1.8E-08 72.5 8.8 47 179-231 7-53 (265)
217 2kjq_A DNAA-related protein; s 97.2 0.00021 7.3E-09 67.5 4.4 26 207-232 36-61 (149)
218 1ojl_A Transcriptional regulat 97.2 0.00065 2.2E-08 73.1 8.6 48 178-231 2-49 (304)
219 4b4t_L 26S protease subunit RP 97.1 0.0042 1.4E-07 69.3 14.1 180 178-385 181-386 (437)
220 2c9o_A RUVB-like 1; hexameric 97.1 0.0043 1.5E-07 71.1 14.8 93 292-392 298-409 (456)
221 1ofh_A ATP-dependent HSL prote 97.1 0.0031 1.1E-07 68.4 12.9 54 178-231 15-74 (310)
222 1lv7_A FTSH; alpha/beta domain 97.1 0.0078 2.7E-07 63.0 15.4 186 177-390 11-222 (257)
223 4b4t_J 26S protease regulatory 97.1 0.0052 1.8E-07 67.3 14.0 180 178-385 148-353 (405)
224 3pxi_A Negative regulator of g 97.0 0.0011 3.9E-08 81.5 9.8 151 178-359 180-338 (758)
225 4b4t_K 26S protease regulatory 97.0 0.0058 2E-07 68.0 14.4 181 177-385 171-378 (428)
226 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0044 1.5E-07 76.4 15.0 159 178-359 186-362 (758)
227 3pxi_A Negative regulator of g 96.9 0.0007 2.4E-08 83.3 6.7 156 178-359 491-675 (758)
228 2ce7_A Cell division protein F 96.9 0.0069 2.4E-07 68.7 13.9 181 178-386 16-221 (476)
229 4b4t_H 26S protease regulatory 96.9 0.013 4.4E-07 65.1 15.4 180 178-385 209-414 (467)
230 4b4t_M 26S protease regulatory 96.9 0.0023 8E-08 71.2 9.6 179 178-385 181-386 (434)
231 4b4t_I 26S protease regulatory 96.8 0.011 3.9E-07 64.8 13.7 179 178-385 182-387 (437)
232 2r62_A Cell division protease 96.8 0.00069 2.4E-08 71.8 4.1 55 178-232 11-69 (268)
233 3t15_A Ribulose bisphosphate c 96.7 0.012 4.2E-07 62.7 13.5 28 205-232 34-61 (293)
234 4h09_A Hypothetical leucine ri 96.7 0.04 1.4E-06 61.5 18.1 267 582-897 59-342 (379)
235 2r44_A Uncharacterized protein 96.4 0.0072 2.4E-07 66.1 9.2 151 179-360 28-199 (331)
236 2cvh_A DNA repair and recombin 96.4 0.015 5E-07 59.2 10.8 85 207-300 20-116 (220)
237 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0093 3.2E-07 73.4 10.4 54 178-231 458-512 (758)
238 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0022 7.6E-08 67.6 4.0 69 207-300 123-193 (331)
239 3cf2_A TER ATPase, transitiona 96.2 0.052 1.8E-06 65.4 15.9 181 178-386 204-407 (806)
240 3m6a_A ATP-dependent protease 96.2 0.01 3.5E-07 69.3 9.2 163 177-359 80-266 (543)
241 1qvr_A CLPB protein; coiled co 96.2 0.013 4.3E-07 73.0 10.6 139 178-328 558-710 (854)
242 2x8a_A Nuclear valosin-contain 96.1 0.048 1.6E-06 57.3 13.4 126 210-359 47-191 (274)
243 2qgz_A Helicase loader, putati 96.1 0.0023 7.7E-08 68.8 2.9 26 207-232 152-177 (308)
244 1ixz_A ATP-dependent metallopr 96.1 0.035 1.2E-06 57.8 11.9 157 178-359 16-199 (254)
245 2dhr_A FTSH; AAA+ protein, hex 96.0 0.075 2.5E-06 60.6 14.9 177 177-386 30-236 (499)
246 1iy2_A ATP-dependent metallopr 95.9 0.045 1.5E-06 57.9 12.0 159 177-359 39-223 (278)
247 1um8_A ATP-dependent CLP prote 95.8 0.05 1.7E-06 60.5 12.6 24 208-231 73-96 (376)
248 3lw7_A Adenylate kinase relate 95.5 0.08 2.7E-06 51.3 11.5 19 209-227 3-21 (179)
249 2b8t_A Thymidine kinase; deoxy 95.3 0.012 4.1E-07 59.2 4.6 113 207-330 12-127 (223)
250 3hr8_A Protein RECA; alpha and 95.3 0.03 1E-06 60.7 7.8 85 206-300 60-150 (356)
251 3rfe_A Platelet glycoprotein I 95.3 0.019 6.6E-07 52.3 5.4 52 596-649 12-66 (130)
252 1ypw_A Transitional endoplasmi 95.2 0.09 3.1E-06 64.4 12.7 160 178-360 204-386 (806)
253 1v5w_A DMC1, meiotic recombina 95.2 0.1 3.5E-06 56.8 11.8 61 205-266 120-181 (343)
254 3io5_A Recombination and repai 95.0 0.059 2E-06 56.5 8.8 84 209-300 30-122 (333)
255 1n0w_A DNA repair protein RAD5 94.9 0.053 1.8E-06 56.0 8.3 59 207-266 24-83 (243)
256 1g5t_A COB(I)alamin adenosyltr 94.9 0.016 5.4E-07 56.4 3.7 113 208-329 29-163 (196)
257 1xp8_A RECA protein, recombina 94.8 0.062 2.1E-06 58.7 8.7 83 207-299 74-162 (366)
258 1jr3_D DNA polymerase III, del 94.7 0.34 1.2E-05 52.9 14.4 156 207-391 18-183 (343)
259 2w0m_A SSO2452; RECA, SSPF, un 94.6 0.05 1.7E-06 55.7 7.3 114 208-329 24-168 (235)
260 2z43_A DNA repair and recombin 94.6 0.081 2.8E-06 57.2 9.0 60 207-267 107-167 (324)
261 2i1q_A DNA repair and recombin 94.6 0.059 2E-06 58.4 8.0 61 206-267 97-168 (322)
262 1rz3_A Hypothetical protein rb 94.6 0.034 1.2E-06 55.4 5.5 43 183-230 3-45 (201)
263 3c8u_A Fructokinase; YP_612366 94.4 0.029 1E-06 56.3 4.5 27 205-231 20-46 (208)
264 2px0_A Flagellar biosynthesis 94.3 0.075 2.6E-06 56.3 7.8 85 207-297 105-190 (296)
265 2zr9_A Protein RECA, recombina 94.1 0.094 3.2E-06 57.1 8.1 84 207-300 61-150 (349)
266 1qhx_A CPT, protein (chloramph 93.8 0.029 9.9E-07 54.7 3.1 24 208-231 4-27 (178)
267 1u94_A RECA protein, recombina 93.7 0.11 3.8E-06 56.5 7.7 83 207-299 63-151 (356)
268 3tqc_A Pantothenate kinase; bi 93.6 0.18 6.1E-06 53.8 8.9 47 181-231 70-116 (321)
269 3kb2_A SPBC2 prophage-derived 93.6 0.033 1.1E-06 53.9 3.1 24 208-231 2-25 (173)
270 1zp6_A Hypothetical protein AT 93.6 0.038 1.3E-06 54.6 3.5 24 207-230 9-32 (191)
271 1ly1_A Polynucleotide kinase; 93.5 0.037 1.3E-06 54.0 3.4 22 208-229 3-24 (181)
272 3vaa_A Shikimate kinase, SK; s 93.5 0.033 1.1E-06 55.5 3.0 25 207-231 25-49 (199)
273 1odf_A YGR205W, hypothetical 3 93.5 0.074 2.5E-06 56.2 5.7 27 205-231 29-55 (290)
274 1vma_A Cell division protein F 93.4 0.29 9.8E-06 52.0 10.1 89 205-299 102-196 (306)
275 3dm5_A SRP54, signal recogniti 93.4 0.46 1.6E-05 52.9 12.0 26 206-231 99-124 (443)
276 3uie_A Adenylyl-sulfate kinase 93.2 0.05 1.7E-06 54.2 3.8 27 206-232 24-50 (200)
277 1knq_A Gluconate kinase; ALFA/ 93.2 0.058 2E-06 52.3 4.1 25 206-230 7-31 (175)
278 1kgd_A CASK, peripheral plasma 93.2 0.043 1.5E-06 53.5 3.1 24 208-231 6-29 (180)
279 3rfe_A Platelet glycoprotein I 93.2 0.1 3.5E-06 47.5 5.4 53 618-673 11-66 (130)
280 3ice_A Transcription terminati 93.1 0.081 2.8E-06 56.9 5.3 54 189-252 163-216 (422)
281 3trf_A Shikimate kinase, SK; a 93.1 0.041 1.4E-06 54.0 2.8 24 208-231 6-29 (185)
282 1kag_A SKI, shikimate kinase I 93.1 0.038 1.3E-06 53.5 2.6 24 208-231 5-28 (173)
283 3hws_A ATP-dependent CLP prote 93.0 0.064 2.2E-06 59.3 4.6 53 179-231 16-75 (363)
284 3bh0_A DNAB-like replicative h 93.0 0.62 2.1E-05 49.9 12.2 52 207-265 68-119 (315)
285 1gvn_B Zeta; postsegregational 92.8 0.099 3.4E-06 55.3 5.5 42 186-230 15-56 (287)
286 2rhm_A Putative kinase; P-loop 92.8 0.064 2.2E-06 53.0 3.8 25 207-231 5-29 (193)
287 1nks_A Adenylate kinase; therm 92.8 0.054 1.8E-06 53.5 3.2 24 208-231 2-25 (194)
288 4gp7_A Metallophosphoesterase; 92.7 0.056 1.9E-06 52.2 3.2 23 207-229 9-31 (171)
289 3nbx_X ATPase RAVA; AAA+ ATPas 92.6 0.065 2.2E-06 61.2 4.0 43 179-231 23-65 (500)
290 3lda_A DNA repair protein RAD5 92.6 0.31 1.1E-05 53.8 9.4 60 207-267 178-238 (400)
291 3t61_A Gluconokinase; PSI-biol 92.6 0.048 1.6E-06 54.4 2.6 25 207-231 18-42 (202)
292 4eun_A Thermoresistant glucoki 92.6 0.055 1.9E-06 53.9 3.0 24 207-230 29-52 (200)
293 2ga8_A Hypothetical 39.9 kDa p 92.6 0.11 3.8E-06 55.6 5.5 48 181-232 2-49 (359)
294 1zuh_A Shikimate kinase; alpha 92.6 0.054 1.8E-06 52.2 2.8 26 206-231 6-31 (168)
295 3sr0_A Adenylate kinase; phosp 92.6 0.13 4.4E-06 51.1 5.6 23 209-231 2-24 (206)
296 2ze6_A Isopentenyl transferase 92.5 0.062 2.1E-06 55.7 3.4 24 208-231 2-25 (253)
297 2bdt_A BH3686; alpha-beta prot 92.5 0.067 2.3E-06 52.7 3.5 22 208-229 3-24 (189)
298 1uf9_A TT1252 protein; P-loop, 92.5 0.068 2.3E-06 53.3 3.5 26 205-230 6-31 (203)
299 1ukz_A Uridylate kinase; trans 92.4 0.079 2.7E-06 52.9 3.9 27 205-231 13-39 (203)
300 2qt1_A Nicotinamide riboside k 92.4 0.072 2.5E-06 53.3 3.7 26 205-230 19-44 (207)
301 1kht_A Adenylate kinase; phosp 92.4 0.062 2.1E-06 53.0 3.1 24 208-231 4-27 (192)
302 1pzn_A RAD51, DNA repair and r 92.4 0.27 9.1E-06 53.6 8.4 50 205-254 129-179 (349)
303 3tau_A Guanylate kinase, GMP k 92.4 0.065 2.2E-06 53.7 3.3 25 207-231 8-32 (208)
304 3iij_A Coilin-interacting nucl 92.4 0.054 1.9E-06 52.8 2.5 25 207-231 11-35 (180)
305 1y63_A LMAJ004144AAA protein; 92.3 0.064 2.2E-06 52.5 3.0 24 207-230 10-33 (184)
306 2orw_A Thymidine kinase; TMTK, 92.3 0.015 5E-07 57.1 -1.7 108 208-329 4-113 (184)
307 3cf2_A TER ATPase, transitiona 92.3 0.81 2.8E-05 55.1 12.9 159 178-359 477-661 (806)
308 2yvu_A Probable adenylyl-sulfa 92.3 0.087 3E-06 51.7 3.9 28 205-232 11-38 (186)
309 2jaq_A Deoxyguanosine kinase; 92.2 0.067 2.3E-06 53.4 3.1 23 209-231 2-24 (205)
310 2qor_A Guanylate kinase; phosp 92.2 0.056 1.9E-06 54.0 2.5 25 207-231 12-36 (204)
311 3tr0_A Guanylate kinase, GMP k 92.2 0.071 2.4E-06 53.3 3.3 23 208-230 8-30 (205)
312 1jjv_A Dephospho-COA kinase; P 92.2 0.078 2.7E-06 53.1 3.5 22 208-229 3-24 (206)
313 3asz_A Uridine kinase; cytidin 92.2 0.077 2.6E-06 53.3 3.5 25 206-230 5-29 (211)
314 1xjc_A MOBB protein homolog; s 92.2 0.067 2.3E-06 50.9 2.8 25 207-231 4-28 (169)
315 3umf_A Adenylate kinase; rossm 92.1 0.079 2.7E-06 53.0 3.4 27 205-231 27-53 (217)
316 1via_A Shikimate kinase; struc 92.1 0.062 2.1E-06 52.1 2.6 23 209-231 6-28 (175)
317 1tev_A UMP-CMP kinase; ploop, 92.0 0.079 2.7E-06 52.4 3.4 25 207-231 3-27 (196)
318 3a00_A Guanylate kinase, GMP k 92.0 0.058 2E-06 53.0 2.3 24 208-231 2-25 (186)
319 3kl4_A SRP54, signal recogniti 92.0 0.49 1.7E-05 52.6 10.0 27 206-232 96-122 (433)
320 2if2_A Dephospho-COA kinase; a 92.0 0.07 2.4E-06 53.3 3.0 21 209-229 3-23 (204)
321 3a4m_A L-seryl-tRNA(SEC) kinas 92.0 0.083 2.8E-06 55.1 3.5 24 207-230 4-27 (260)
322 2j41_A Guanylate kinase; GMP, 92.0 0.075 2.6E-06 53.2 3.1 24 208-231 7-30 (207)
323 2grj_A Dephospho-COA kinase; T 91.9 0.086 2.9E-06 51.8 3.4 26 205-230 10-35 (192)
324 2xxa_A Signal recognition part 91.9 0.68 2.3E-05 51.8 11.1 46 186-231 78-124 (433)
325 3cm0_A Adenylate kinase; ATP-b 91.9 0.092 3.2E-06 51.5 3.7 25 207-231 4-28 (186)
326 1ye8_A Protein THEP1, hypothet 91.9 0.084 2.9E-06 51.2 3.3 24 209-232 2-25 (178)
327 2c95_A Adenylate kinase 1; tra 91.9 0.071 2.4E-06 52.8 2.8 25 207-231 9-33 (196)
328 1cke_A CK, MSSA, protein (cyti 91.9 0.077 2.6E-06 54.1 3.1 23 208-230 6-28 (227)
329 1ex7_A Guanylate kinase; subst 91.9 0.059 2E-06 52.4 2.1 24 208-231 2-25 (186)
330 3fwy_A Light-independent proto 91.8 0.089 3.1E-06 56.2 3.7 26 205-230 46-71 (314)
331 2p5t_B PEZT; postsegregational 91.8 0.12 4.3E-06 53.5 4.6 43 186-231 14-56 (253)
332 2iyv_A Shikimate kinase, SK; t 91.7 0.065 2.2E-06 52.5 2.3 23 209-231 4-26 (184)
333 1qf9_A UMP/CMP kinase, protein 91.7 0.1 3.5E-06 51.5 3.8 25 207-231 6-30 (194)
334 3tlx_A Adenylate kinase 2; str 91.7 0.12 4.2E-06 53.1 4.5 26 206-231 28-53 (243)
335 2pez_A Bifunctional 3'-phospho 91.7 0.1 3.4E-06 50.9 3.5 25 207-231 5-29 (179)
336 2plr_A DTMP kinase, probable t 91.6 0.093 3.2E-06 52.7 3.4 25 208-232 5-29 (213)
337 2pt5_A Shikimate kinase, SK; a 91.6 0.091 3.1E-06 50.5 3.1 23 209-231 2-24 (168)
338 1e6c_A Shikimate kinase; phosp 91.6 0.067 2.3E-06 51.7 2.2 24 208-231 3-26 (173)
339 2hf9_A Probable hydrogenase ni 91.6 0.15 5E-06 51.9 4.9 26 206-231 37-62 (226)
340 1uj2_A Uridine-cytidine kinase 91.5 0.099 3.4E-06 54.2 3.5 27 205-231 20-46 (252)
341 3ney_A 55 kDa erythrocyte memb 91.5 0.084 2.9E-06 51.8 2.8 26 206-231 18-43 (197)
342 1lvg_A Guanylate kinase, GMP k 91.5 0.072 2.5E-06 52.9 2.3 23 208-230 5-27 (198)
343 3aez_A Pantothenate kinase; tr 91.5 0.11 3.7E-06 55.6 3.8 27 205-231 88-114 (312)
344 3upu_A ATP-dependent DNA helic 91.5 0.31 1E-05 55.6 7.9 108 209-331 47-167 (459)
345 2bwj_A Adenylate kinase 5; pho 91.4 0.088 3E-06 52.2 3.0 24 208-231 13-36 (199)
346 1sky_E F1-ATPase, F1-ATP synth 91.4 0.32 1.1E-05 54.2 7.6 49 209-261 153-202 (473)
347 2cdn_A Adenylate kinase; phosp 91.4 0.1 3.5E-06 52.0 3.4 25 207-231 20-44 (201)
348 2pbr_A DTMP kinase, thymidylat 91.4 0.096 3.3E-06 51.7 3.1 23 209-231 2-24 (195)
349 1pgv_A TMD-1, tropomodulin TMD 91.3 0.099 3.4E-06 51.1 3.0 84 588-672 37-136 (197)
350 1htw_A HI0065; nucleotide-bind 91.3 0.13 4.4E-06 48.6 3.7 26 206-231 32-57 (158)
351 4a1f_A DNAB helicase, replicat 91.2 0.38 1.3E-05 51.6 7.7 53 207-266 46-98 (338)
352 2bbw_A Adenylate kinase 4, AK4 91.2 0.1 3.6E-06 53.8 3.3 25 207-231 27-51 (246)
353 2jeo_A Uridine-cytidine kinase 91.1 0.12 4.2E-06 53.2 3.8 25 206-230 24-48 (245)
354 2vli_A Antibiotic resistance p 91.0 0.077 2.6E-06 51.9 2.0 24 208-231 6-29 (183)
355 2wsm_A Hydrogenase expression/ 91.0 0.15 5E-06 51.6 4.2 41 183-231 14-54 (221)
356 4e22_A Cytidylate kinase; P-lo 90.9 0.11 3.9E-06 53.7 3.3 24 208-231 28-51 (252)
357 1znw_A Guanylate kinase, GMP k 90.9 0.12 4E-06 51.7 3.3 24 208-231 21-44 (207)
358 2f6r_A COA synthase, bifunctio 90.9 0.13 4.5E-06 54.2 3.7 25 205-229 73-97 (281)
359 2ffh_A Protein (FFH); SRP54, s 90.9 0.57 2E-05 52.0 9.0 26 207-232 98-123 (425)
360 2ck3_D ATP synthase subunit be 90.7 1.1 3.8E-05 49.8 11.0 65 189-264 142-207 (482)
361 1aky_A Adenylate kinase; ATP:A 90.7 0.11 3.9E-06 52.5 3.0 24 208-231 5-28 (220)
362 2z0h_A DTMP kinase, thymidylat 90.7 0.12 4.2E-06 51.1 3.1 23 209-231 2-24 (197)
363 1nn5_A Similar to deoxythymidy 90.6 0.12 3.9E-06 52.2 2.9 25 207-231 9-33 (215)
364 2wwf_A Thymidilate kinase, put 90.6 0.12 4E-06 51.9 3.0 25 207-231 10-34 (212)
365 1fx0_B ATP synthase beta chain 90.6 0.76 2.6E-05 51.3 9.5 53 208-264 166-219 (498)
366 1z6g_A Guanylate kinase; struc 90.5 0.11 3.6E-06 52.6 2.5 25 207-231 23-47 (218)
367 1j8m_F SRP54, signal recogniti 90.5 0.62 2.1E-05 49.2 8.5 88 207-299 98-190 (297)
368 1vht_A Dephospho-COA kinase; s 90.5 0.15 5.2E-06 51.4 3.7 23 207-229 4-26 (218)
369 2v54_A DTMP kinase, thymidylat 90.5 0.13 4.6E-06 51.2 3.2 24 208-231 5-28 (204)
370 1m7g_A Adenylylsulfate kinase; 90.4 0.15 5.2E-06 51.1 3.6 25 207-231 25-49 (211)
371 3fb4_A Adenylate kinase; psych 90.4 0.12 4.2E-06 52.1 2.9 23 209-231 2-24 (216)
372 1zd8_A GTP:AMP phosphotransfer 90.4 0.12 4E-06 52.6 2.8 25 207-231 7-31 (227)
373 3dl0_A Adenylate kinase; phosp 90.4 0.13 4.3E-06 51.9 3.0 23 209-231 2-24 (216)
374 1rj9_A FTSY, signal recognitio 90.4 0.13 4.5E-06 54.6 3.2 25 207-231 102-126 (304)
375 4a74_A DNA repair and recombin 90.4 0.39 1.3E-05 48.8 6.8 48 206-253 24-72 (231)
376 1s96_A Guanylate kinase, GMP k 90.4 0.13 4.6E-06 51.6 3.1 25 207-231 16-40 (219)
377 1gtv_A TMK, thymidylate kinase 90.2 0.073 2.5E-06 53.6 0.9 23 209-231 2-24 (214)
378 3p32_A Probable GTPase RV1496/ 90.1 0.27 9.2E-06 53.8 5.5 39 187-231 65-103 (355)
379 3nwj_A ATSK2; P loop, shikimat 90.1 0.11 3.8E-06 53.4 2.2 24 208-231 49-72 (250)
380 1g8p_A Magnesium-chelatase 38 90.1 0.11 3.8E-06 57.0 2.4 46 178-231 24-69 (350)
381 3d3q_A TRNA delta(2)-isopenten 90.0 0.16 5.4E-06 54.4 3.4 24 208-231 8-31 (340)
382 1tue_A Replication protein E1; 89.9 0.19 6.6E-06 49.0 3.6 25 207-231 58-82 (212)
383 2f1r_A Molybdopterin-guanine d 89.9 0.092 3.1E-06 50.4 1.3 25 208-232 3-27 (171)
384 1zak_A Adenylate kinase; ATP:A 89.8 0.12 4.2E-06 52.3 2.3 24 208-231 6-29 (222)
385 1np6_A Molybdopterin-guanine d 89.8 0.16 5.5E-06 48.8 3.0 26 206-231 5-30 (174)
386 2i3b_A HCR-ntpase, human cance 89.7 0.15 5E-06 50.0 2.7 23 209-231 3-25 (189)
387 3a8t_A Adenylate isopentenyltr 89.7 0.19 6.5E-06 53.5 3.7 25 207-231 40-64 (339)
388 3ake_A Cytidylate kinase; CMP 89.7 0.17 5.7E-06 50.6 3.1 23 209-231 4-26 (208)
389 2j37_W Signal recognition part 89.5 1.7 5.9E-05 49.4 11.7 27 205-231 99-125 (504)
390 1q57_A DNA primase/helicase; d 89.5 1 3.5E-05 52.0 10.1 53 207-265 242-294 (503)
391 3r20_A Cytidylate kinase; stru 89.5 0.18 6.1E-06 51.0 3.1 24 208-231 10-33 (233)
392 1sq5_A Pantothenate kinase; P- 89.5 0.2 6.9E-06 53.6 3.8 25 206-230 79-103 (308)
393 3be4_A Adenylate kinase; malar 89.4 0.14 4.6E-06 51.8 2.2 24 208-231 6-29 (217)
394 3b9q_A Chloroplast SRP recepto 89.3 0.21 7.1E-06 53.1 3.7 26 206-231 99-124 (302)
395 2onk_A Molybdate/tungstate ABC 89.3 0.17 5.9E-06 51.7 2.9 24 208-231 25-48 (240)
396 3tif_A Uncharacterized ABC tra 89.3 0.18 6.2E-06 51.4 3.1 24 208-231 32-55 (235)
397 3crm_A TRNA delta(2)-isopenten 89.3 0.19 6.4E-06 53.4 3.2 24 208-231 6-29 (323)
398 2ehv_A Hypothetical protein PH 89.1 0.19 6.5E-06 51.9 3.3 23 207-229 30-52 (251)
399 3exa_A TRNA delta(2)-isopenten 89.1 0.22 7.4E-06 52.3 3.5 25 207-231 3-27 (322)
400 2xb4_A Adenylate kinase; ATP-b 89.1 0.19 6.6E-06 50.8 3.1 23 209-231 2-24 (223)
401 3lnc_A Guanylate kinase, GMP k 89.0 0.14 4.9E-06 52.2 2.1 23 208-230 28-51 (231)
402 2pcj_A ABC transporter, lipopr 89.0 0.19 6.4E-06 50.9 2.9 23 208-230 31-53 (224)
403 1e4v_A Adenylate kinase; trans 88.8 0.2 6.8E-06 50.4 3.0 23 209-231 2-24 (214)
404 1zu4_A FTSY; GTPase, signal re 88.7 0.53 1.8E-05 50.3 6.4 28 205-232 103-130 (320)
405 3e70_C DPA, signal recognition 88.6 0.26 9E-06 52.9 3.9 26 206-231 128-153 (328)
406 1g41_A Heat shock protein HSLU 88.6 0.3 1E-05 54.4 4.4 55 178-232 15-75 (444)
407 3gfo_A Cobalt import ATP-bindi 88.6 0.22 7.4E-06 52.0 3.1 23 208-230 35-57 (275)
408 2cbz_A Multidrug resistance-as 88.6 0.22 7.5E-06 50.8 3.1 24 208-231 32-55 (237)
409 3b85_A Phosphate starvation-in 88.4 0.18 6E-06 50.3 2.2 22 209-230 24-45 (208)
410 3zvl_A Bifunctional polynucleo 88.4 0.23 8E-06 55.6 3.5 27 205-231 256-282 (416)
411 1ak2_A Adenylate kinase isoenz 88.3 0.23 7.9E-06 50.7 3.1 24 208-231 17-40 (233)
412 1q3t_A Cytidylate kinase; nucl 88.3 0.23 7.8E-06 50.8 3.1 26 205-230 14-39 (236)
413 1b0u_A Histidine permease; ABC 88.3 0.23 7.8E-06 51.6 3.1 24 208-231 33-56 (262)
414 1mv5_A LMRA, multidrug resista 88.3 0.25 8.5E-06 50.7 3.3 24 207-230 28-51 (243)
415 1ltq_A Polynucleotide kinase; 88.2 0.25 8.4E-06 52.8 3.4 23 208-230 3-25 (301)
416 4g1u_C Hemin import ATP-bindin 88.2 0.24 8.1E-06 51.5 3.1 24 208-231 38-61 (266)
417 1sgw_A Putative ABC transporte 88.1 0.21 7.1E-06 50.0 2.5 24 208-231 36-59 (214)
418 1yrb_A ATP(GTP)binding protein 88.1 0.3 1E-05 50.9 3.9 26 205-230 12-37 (262)
419 1ji0_A ABC transporter; ATP bi 88.1 0.24 8.4E-06 50.6 3.1 24 208-231 33-56 (240)
420 2qmh_A HPR kinase/phosphorylas 88.1 0.27 9.3E-06 47.7 3.2 24 208-231 35-58 (205)
421 2olj_A Amino acid ABC transpor 88.0 0.24 8.4E-06 51.3 3.1 24 208-231 51-74 (263)
422 2q6t_A DNAB replication FORK h 88.0 1.6 5.5E-05 49.3 10.2 53 207-265 200-252 (444)
423 3b5x_A Lipid A export ATP-bind 88.0 1.9 6.4E-05 50.7 11.0 25 207-231 369-393 (582)
424 3foz_A TRNA delta(2)-isopenten 88.0 0.32 1.1E-05 51.0 3.8 26 206-231 9-34 (316)
425 2og2_A Putative signal recogni 88.0 0.28 9.7E-06 53.2 3.7 26 206-231 156-181 (359)
426 3l0o_A Transcription terminati 88.0 1.1 3.9E-05 48.2 8.1 55 187-251 162-216 (427)
427 2d2e_A SUFC protein; ABC-ATPas 87.9 0.26 9.1E-06 50.7 3.3 23 208-230 30-52 (250)
428 1g6h_A High-affinity branched- 87.9 0.25 8.6E-06 51.1 3.1 24 208-231 34-57 (257)
429 2pze_A Cystic fibrosis transme 87.9 0.26 8.8E-06 50.0 3.1 24 208-231 35-58 (229)
430 2wji_A Ferrous iron transport 87.9 0.35 1.2E-05 46.1 3.9 23 208-230 4-26 (165)
431 2ff7_A Alpha-hemolysin translo 87.9 0.26 8.8E-06 50.7 3.1 24 208-231 36-59 (247)
432 1vpl_A ABC transporter, ATP-bi 87.7 0.26 9E-06 50.8 3.1 24 208-231 42-65 (256)
433 2zu0_C Probable ATP-dependent 87.6 0.28 9.5E-06 51.1 3.3 23 208-230 47-69 (267)
434 2vp4_A Deoxynucleoside kinase; 87.6 0.27 9.3E-06 50.0 3.1 26 205-230 18-43 (230)
435 1a7j_A Phosphoribulokinase; tr 87.6 0.14 4.7E-06 54.2 0.9 24 207-230 5-28 (290)
436 2eyu_A Twitching motility prot 87.5 0.34 1.2E-05 50.2 3.8 24 207-230 25-48 (261)
437 2ghi_A Transport protein; mult 87.5 0.28 9.5E-06 50.9 3.1 24 208-231 47-70 (260)
438 1oix_A RAS-related protein RAB 87.4 0.28 9.7E-06 48.1 3.1 25 207-231 29-53 (191)
439 2ixe_A Antigen peptide transpo 87.4 0.28 9.5E-06 51.2 3.1 24 208-231 46-69 (271)
440 4eaq_A DTMP kinase, thymidylat 87.4 0.34 1.2E-05 49.1 3.7 26 206-231 25-50 (229)
441 1pgv_A TMD-1, tropomodulin TMD 87.4 0.23 7.7E-06 48.5 2.2 113 558-673 39-168 (197)
442 2qi9_C Vitamin B12 import ATP- 87.3 0.29 9.8E-06 50.3 3.1 24 208-231 27-50 (249)
443 2zej_A Dardarin, leucine-rich 87.3 0.28 9.6E-06 47.8 2.9 22 209-230 4-25 (184)
444 1svm_A Large T antigen; AAA+ f 87.2 0.48 1.6E-05 51.9 4.9 25 206-230 168-192 (377)
445 2yz2_A Putative ABC transporte 87.1 0.3 1E-05 50.8 3.1 24 208-231 34-57 (266)
446 2ihy_A ABC transporter, ATP-bi 87.0 0.3 1E-05 51.1 3.1 24 208-231 48-71 (279)
447 2r6a_A DNAB helicase, replicat 87.0 1.1 3.6E-05 51.0 7.9 51 207-263 203-253 (454)
448 3k1j_A LON protease, ATP-depen 87.0 0.31 1.1E-05 57.7 3.6 44 178-231 41-84 (604)
449 2nq2_C Hypothetical ABC transp 87.0 0.3 1E-05 50.3 3.0 24 208-231 32-55 (253)
450 3bk7_A ABC transporter ATP-bin 87.0 3.1 0.00011 48.7 11.9 128 208-335 383-538 (607)
451 2v9p_A Replication protein E1; 86.9 0.32 1.1E-05 51.4 3.2 25 206-230 125-149 (305)
452 2wjg_A FEOB, ferrous iron tran 86.9 0.51 1.8E-05 46.0 4.6 25 206-230 6-30 (188)
453 3cmu_A Protein RECA, recombina 86.9 0.77 2.6E-05 60.6 7.3 81 208-298 1428-1514(2050)
454 2yhs_A FTSY, cell division pro 86.9 0.35 1.2E-05 54.3 3.6 27 205-231 291-317 (503)
455 2dyk_A GTP-binding protein; GT 86.8 0.38 1.3E-05 45.4 3.5 24 208-231 2-25 (161)
456 2j9r_A Thymidine kinase; TK1, 86.8 0.64 2.2E-05 45.8 5.1 110 207-330 28-139 (214)
457 3bgw_A DNAB-like replicative h 86.7 2.1 7.3E-05 48.0 10.1 51 207-264 197-247 (444)
458 3e1s_A Exodeoxyribonuclease V, 86.7 0.4 1.4E-05 56.0 4.2 107 208-330 205-317 (574)
459 2c61_A A-type ATP synthase non 86.6 0.64 2.2E-05 51.7 5.5 90 208-298 153-258 (469)
460 2f9l_A RAB11B, member RAS onco 86.6 0.33 1.1E-05 48.0 3.0 24 207-230 5-28 (199)
461 3hjn_A DTMP kinase, thymidylat 86.6 0.78 2.7E-05 45.1 5.7 24 209-232 2-25 (197)
462 2ocp_A DGK, deoxyguanosine kin 86.4 0.37 1.3E-05 49.4 3.4 24 208-231 3-26 (241)
463 1ls1_A Signal recognition part 86.4 0.4 1.4E-05 50.8 3.6 26 207-232 98-123 (295)
464 4akg_A Glutathione S-transfera 86.3 4.1 0.00014 56.0 14.1 139 208-359 1268-1431(2695)
465 3lv8_A DTMP kinase, thymidylat 86.1 0.67 2.3E-05 47.0 5.0 26 207-232 27-52 (236)
466 2ged_A SR-beta, signal recogni 86.1 0.57 2E-05 45.9 4.5 26 206-231 47-72 (193)
467 3end_A Light-independent proto 86.0 0.42 1.4E-05 51.2 3.7 42 205-251 39-80 (307)
468 3vr4_D V-type sodium ATPase su 86.0 0.86 2.9E-05 50.4 6.1 89 209-298 153-257 (465)
469 1g8f_A Sulfate adenylyltransfe 86.0 0.41 1.4E-05 54.5 3.7 27 206-232 394-420 (511)
470 1u0j_A DNA replication protein 85.9 0.66 2.3E-05 47.6 4.8 39 187-231 90-128 (267)
471 3vkw_A Replicase large subunit 85.9 1.5 5.3E-05 48.5 8.0 26 204-229 158-183 (446)
472 2ce2_X GTPase HRAS; signaling 85.8 0.37 1.3E-05 45.7 2.8 23 209-231 5-27 (166)
473 2pjz_A Hypothetical protein ST 85.8 0.39 1.3E-05 49.8 3.1 23 208-230 31-53 (263)
474 1cr0_A DNA primase/helicase; R 85.8 0.37 1.3E-05 51.3 3.1 26 207-232 35-60 (296)
475 1nlf_A Regulatory protein REPA 85.8 0.37 1.3E-05 50.7 3.1 23 208-230 31-53 (279)
476 3nh6_A ATP-binding cassette SU 85.7 0.31 1.1E-05 51.6 2.3 25 207-231 80-104 (306)
477 1z2a_A RAS-related protein RAB 85.6 0.52 1.8E-05 44.8 3.8 25 207-231 5-29 (168)
478 2nzj_A GTP-binding protein REM 85.6 0.42 1.4E-05 45.8 3.1 25 207-231 4-28 (175)
479 4edh_A DTMP kinase, thymidylat 85.5 0.97 3.3E-05 45.0 5.8 26 207-232 6-31 (213)
480 3con_A GTPase NRAS; structural 85.5 0.41 1.4E-05 46.8 3.0 24 208-231 22-45 (190)
481 1nij_A Hypothetical protein YJ 85.4 0.38 1.3E-05 51.6 2.9 26 206-231 3-28 (318)
482 3llm_A ATP-dependent RNA helic 85.3 1.7 5.9E-05 44.1 7.8 21 208-228 77-97 (235)
483 1p5z_B DCK, deoxycytidine kina 85.3 0.33 1.1E-05 50.6 2.3 26 206-231 23-48 (263)
484 3eph_A TRNA isopentenyltransfe 85.2 0.44 1.5E-05 52.0 3.3 23 208-230 3-25 (409)
485 3sop_A Neuronal-specific septi 85.0 0.43 1.5E-05 49.7 3.0 23 209-231 4-26 (270)
486 2gj8_A MNME, tRNA modification 85.0 0.45 1.5E-05 45.7 3.0 24 208-231 5-28 (172)
487 1fzq_A ADP-ribosylation factor 85.0 0.61 2.1E-05 45.2 4.0 25 206-230 15-39 (181)
488 3mfy_A V-type ATP synthase alp 84.9 1.9 6.5E-05 48.7 8.1 58 189-260 216-274 (588)
489 4tmk_A Protein (thymidylate ki 84.8 0.89 3.1E-05 45.3 5.1 25 208-232 4-28 (213)
490 1u8z_A RAS-related protein RAL 84.8 0.47 1.6E-05 45.0 3.0 25 207-231 4-28 (168)
491 3kta_A Chromosome segregation 84.7 0.48 1.6E-05 46.0 3.1 21 209-229 28-48 (182)
492 3q85_A GTP-binding protein REM 84.7 0.5 1.7E-05 45.0 3.2 22 208-229 3-24 (169)
493 3tui_C Methionine import ATP-b 84.6 0.48 1.6E-05 51.3 3.3 23 208-230 55-77 (366)
494 2bbs_A Cystic fibrosis transme 84.6 0.44 1.5E-05 50.1 2.9 25 207-231 64-88 (290)
495 2lkc_A Translation initiation 84.5 0.57 2E-05 45.0 3.5 25 206-230 7-31 (178)
496 2erx_A GTP-binding protein DI- 84.5 0.51 1.7E-05 45.0 3.1 23 208-230 4-26 (172)
497 3gmt_A Adenylate kinase; ssgci 84.5 0.47 1.6E-05 47.5 2.9 23 209-231 10-32 (230)
498 1c1y_A RAS-related protein RAP 84.5 0.49 1.7E-05 44.9 3.0 23 209-231 5-27 (167)
499 3q72_A GTP-binding protein RAD 84.5 0.44 1.5E-05 45.2 2.6 22 209-230 4-25 (166)
500 1tq4_A IIGP1, interferon-induc 84.4 0.47 1.6E-05 52.5 3.2 25 206-230 68-92 (413)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.7e-47 Score=450.31 Aligned_cols=316 Identities=17% Similarity=0.241 Sum_probs=256.2
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhc--cccccccCCCCceeEEEEeCCCC--CHHH
Q 047598 181 YGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYN--DKSLNAKDFKFDIKAWVCISDVF--DVLS 256 (1112)
Q Consensus 181 vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~~~~F~~~~wv~~~~~~--~~~~ 256 (1112)
|||+.++++|.++|... .+...++|+|+||||+||||||+++|+ +.++. .+|+.++||++++.+ +...
T Consensus 131 ~GR~~~~~~l~~~L~~~-----~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~---~~F~~~~wv~vs~~~~~~~~~ 202 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-----CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIG---INYDSIVWLKDSGTAPKSTFD 202 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-----TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBT---TTBSEEEEEECCCCSTTHHHH
T ss_pred CCchHHHHHHHHHHhcc-----cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHh---ccCCcEEEEEECCCCCCCHHH
Confidence 59999999999999751 134579999999999999999999998 56666 889999999999985 8899
Q ss_pred HHHHHHHHhcCCCC-------CCCChHHHHHHHHHHhCCC-cEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC
Q 047598 257 ISKALLESITRKPC-------HLNTLNEVQVDLKTAVDGK-RFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH 328 (1112)
Q Consensus 257 ~~~~il~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 328 (1112)
+++.|+.+++.... +..+.+.+...+++.|+++ ||||||||||+.+...|.. .+||+||||||+
T Consensus 203 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~ 274 (549)
T 2a5y_B 203 LFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRD 274 (549)
T ss_dssp HHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESB
T ss_pred HHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCC
Confidence 99999999986521 1234566788999999996 9999999999864323432 279999999999
Q ss_pred hhhhhhcC-CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCCCHHHHHHH
Q 047598 329 SHVASTMG-PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTTRCDLWEDI 407 (1112)
Q Consensus 329 ~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~w~~~ 407 (1112)
+.++..++ ....|+|++|+.++||+||.+++|+.. .++..++++++|+++|+|+||||+++|+.|+.+. .+|...
T Consensus 275 ~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~ 350 (549)
T 2a5y_B 275 VEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQ 350 (549)
T ss_dssp GGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHH
T ss_pred HHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHH
Confidence 99998876 346799999999999999999987653 2466778899999999999999999999998774 233344
Q ss_pred HhccccCCCCCCCchHHHHHHhcCCchHHHHHHh-----------HhhcCCCCceechHHHHHHHHhC--CcccccCCCc
Q 047598 408 LDSKIWDLPQQSGILPVLRLSYHHLPSYLKRCFA-----------YCAIFPKDYEFYEKELVFLWIGG--GIIRQSKNNE 474 (1112)
Q Consensus 408 l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~a~fp~~~~i~~~~li~~Wia~--g~i~~~~~~~ 474 (1112)
+....+... ...+.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.....+.
T Consensus 351 l~~~l~~~~-~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~ 425 (549)
T 2a5y_B 351 LNNKLESRG-LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQ 425 (549)
T ss_dssp HHHHHHHHC-SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CC
T ss_pred hHHHhhccc-HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCC
Confidence 443322211 356888999999999999999999 999999999999 8999999 9998755466
Q ss_pred hHHHHHHHHHHHHhhCCccccccCC-CccceechhHHHHHHHhhccceE
Q 047598 475 QLEDLGSQCFHDLVSRSIFQPSSRN-SCKFVMHDLVHDLAQLVSGETIF 522 (1112)
Q Consensus 475 ~~~~~~~~~~~~L~~~~l~~~~~~~-~~~~~~H~lv~~~~~~~~~~~~~ 522 (1112)
+.+++++ |+++|+++||++....+ ...|+|||+||++|++++.++++
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 7788888 99999999999987543 45799999999999999887654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.3e-38 Score=377.17 Aligned_cols=284 Identities=17% Similarity=0.243 Sum_probs=228.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCce-eEEEEeCCCCCHHHH
Q 047598 179 AVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDI-KAWVCISDVFDVLSI 257 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~-~~wv~~~~~~~~~~~ 257 (1112)
..|||+.++++|.++|.. . ...++|+|+||||+||||||+++|++.++. .+|+. ++|+++++.++...+
T Consensus 129 ~~VGRe~eLeeL~elL~~------~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~---~~Fd~gV~WVsVs~~~d~~~I 198 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLE------L-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQ---CKMDFKIFWLNLKNCNSPETV 198 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHH------C-CSSCEEEECCSTTSSHHHHHHHHHHHCHHH---HHHSSCEEEEECCCSSSHHHH
T ss_pred CCCCcHHHHHHHHHHHhc------c-CCCeEEEEEcCCCccHHHHHHHHHHhhHHH---HhCCCcEEEEEeCCCCCHHHH
Confidence 459999999999999975 1 236899999999999999999999887666 77986 999999999998888
Q ss_pred HHHHHHHhcCCC---C---C-----CCChHHHHHHHHHHh---CCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEE
Q 047598 258 SKALLESITRKP---C---H-----LNTLNEVQVDLKTAV---DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMI 323 (1112)
Q Consensus 258 ~~~il~~l~~~~---~---~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 323 (1112)
+..+++.++... . + ..+.+++...+++.| .+||+||||||||+. +.|..+ + +||+||
T Consensus 199 L~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRIL 269 (1221)
T 1vt4_I 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKIL 269 (1221)
T ss_dssp HHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEE
T ss_pred HHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEE
Confidence 888877543211 0 1 012345566677755 789999999999984 566543 2 789999
Q ss_pred EEcCChhhhhhcCCCceeeCC------CCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhc
Q 047598 324 ITTRHSHVASTMGPIKHYNLK------RLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLR 397 (1112)
Q Consensus 324 vTTR~~~v~~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 397 (1112)
||||++.++..+.....|.++ +|+.+|||+||+++. +.. . +++..+| |+|+||||+++|+.|+
T Consensus 270 VTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr 338 (1221)
T 1vt4_I 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIR 338 (1221)
T ss_dssp EECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHH
T ss_pred EeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHh
Confidence 999999998655444456666 999999999999984 321 1 1123333 9999999999999999
Q ss_pred CC--CHHHHHHHHhccccCCCCCCCchHHHHHHhcCCchHH-HHHHhHhhcCCCCceechHHHHHHHHhCCcccccCCCc
Q 047598 398 TT--RCDLWEDILDSKIWDLPQQSGILPVLRLSYHHLPSYL-KRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNNE 474 (1112)
Q Consensus 398 ~~--~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~~~ 474 (1112)
.+ +.++|... ....+..+|.+||+.||++. |+||+|||+||+++.|+.+.++.+|+++|
T Consensus 339 ~k~~s~eeW~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG--------- 400 (1221)
T 1vt4_I 339 DGLATWDNWKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI--------- 400 (1221)
T ss_dssp HSCSSHHHHHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---------
T ss_pred CCCCCHHHHhcC---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---------
Confidence 88 77889764 13569999999999999999 99999999999999999999999998887
Q ss_pred hHHHHHHHHHHHHhhCCccccccCCCccceechhHHHHH
Q 047598 475 QLEDLGSQCFHDLVSRSIFQPSSRNSCKFVMHDLVHDLA 513 (1112)
Q Consensus 475 ~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~H~lv~~~~ 513 (1112)
++.++.++++|+++||++... ....|+|||++++++
T Consensus 401 --eedAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 401 --KSDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp --SHHHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred --HHHHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHh
Confidence 134888999999999999853 345799999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.2e-37 Score=408.44 Aligned_cols=315 Identities=22% Similarity=0.276 Sum_probs=249.2
Q ss_pred CCCCCCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 172 SSVPTERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 172 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
..++....||||++++++|.++|.. .+...++|+|+||||+||||||+++|++.+... ...|+.++||++++.
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~------~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~-~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWK------LNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLE-GCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHT------TTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHT-TTSTTCEEEEECCSC
T ss_pred CCCCCCceeccHHHHHHHHHHHHhh------ccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHH-hhCCCeEEEEEECCc
Confidence 3445567899999999999999976 335689999999999999999999999864321 134567889999985
Q ss_pred CC--HHHHHHHHHHHhcCCCC----CCCChHHHHHHHHHHhCCC--cEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEE
Q 047598 252 FD--VLSISKALLESITRKPC----HLNTLNEVQVDLKTAVDGK--RFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMI 323 (1112)
Q Consensus 252 ~~--~~~~~~~il~~l~~~~~----~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 323 (1112)
.+ ....+..++..+..... ...+.+++...++..+.++ ||||||||||+. ..|. ...+||+||
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~-------~~~~~~~il 261 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLK-------AFDNQCQIL 261 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHT-------TTCSSCEEE
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHH-------hhcCCCEEE
Confidence 43 44556777777765432 2356788888999999887 999999999974 2332 236899999
Q ss_pred EEcCChhhhhh-cCCCceeeCCC-CChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCCCH
Q 047598 324 ITTRHSHVAST-MGPIKHYNLKR-LLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTTRC 401 (1112)
Q Consensus 324 vTTR~~~v~~~-~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~ 401 (1112)
||||++.++.. ++....+.+.+ |+++||++||...++... +..++.+++|+++|+|+||||+++|++|+.+.
T Consensus 262 vTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~- 335 (1249)
T 3sfz_A 262 LTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP- 335 (1249)
T ss_dssp EEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-
T ss_pred EEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-
Confidence 99999999854 45667899996 999999999999885432 22334689999999999999999999999874
Q ss_pred HHHHHHHhccccCC----CC-----CCCchHHHHHHhcCCchHHHHHHhHhhcCCCCceechHHHHHHHHhCCcccccCC
Q 047598 402 DLWEDILDSKIWDL----PQ-----QSGILPVLRLSYHHLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKN 472 (1112)
Q Consensus 402 ~~w~~~l~~~~~~~----~~-----~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~ 472 (1112)
..|...++...... .. ...+..+|.+||+.||+++|+||+|||+||+++.|+++.++.+|.++
T Consensus 336 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------- 407 (1249)
T 3sfz_A 336 NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------- 407 (1249)
T ss_dssp SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC--------
T ss_pred hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC--------
Confidence 35666655422111 11 13589999999999999999999999999999999999999999553
Q ss_pred CchHHHHHHHHHHHHhhCCccccccCC-CccceechhHHHHHHHhhccc
Q 047598 473 NEQLEDLGSQCFHDLVSRSIFQPSSRN-SCKFVMHDLVHDLAQLVSGET 520 (1112)
Q Consensus 473 ~~~~~~~~~~~~~~L~~~~l~~~~~~~-~~~~~~H~lv~~~~~~~~~~~ 520 (1112)
++.++.++++|+++||++....+ ...|+||+++|++++..+.++
T Consensus 408 ----~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 ----TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ----HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ----HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 36688999999999999976543 235999999999999987765
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-37 Score=384.69 Aligned_cols=469 Identities=17% Similarity=0.192 Sum_probs=271.3
Q ss_pred ccCCcccEEEecccccccccccccCCCcCcEEEccccccc-cccccccCCCCCcEEeecCCCCCcccCccccCCccccEE
Q 047598 589 PKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIR-TLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHL 667 (1112)
Q Consensus 589 ~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 667 (1112)
..+++|++|+|++|.+...+..++.+++|++|+|++|.+. .+|..++++++|++|++++|.....+|.. .+++|++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 4455555555555555443333555555555555555554 34555555555555555555333333332 45555555
Q ss_pred eecCCCccccCCCCCCCC-CCCCccCeeeeccC-CcccCccccccccccCCeeEEecccCCCChhhhhh-ccccCccccC
Q 047598 668 DIKGANLLREMPLGMKEL-KNLRTLSNFIVGKG-EAISGLEDLKNLKFLGGELCISGLENVNDSQKVRE-ATLCEKENLK 744 (1112)
Q Consensus 668 ~L~~~~~l~~lp~~i~~l-~~L~~L~~~~~~~~-~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~-~~l~~~~~L~ 744 (1112)
++++|.+...+|..+..+ ++|++|++.++... ..|..+..+++|+.|. ...+......+ ..+.++++|+
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~--------L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA--------LSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE--------CCSSEEEEECCHHHHTTCTTCC
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEE--------CCCCcccCcCCHHHHhcCCCCC
Confidence 555555333455544443 55555555544432 2233344444444332 00111111111 1133444444
Q ss_pred ceEEEeCCCCCCCchhhhhhH-------------HHhhccCCC--CCCCCceEEEeccCCC-CCCCccCCCCCCceeEEE
Q 047598 745 TLSLEWGSQFDNSQDEVMEEY-------------AVGVLDKLQ--PHKCIKNLTIKQYNGA-RFPSWLGDPLFSKMEVLK 808 (1112)
Q Consensus 745 ~L~l~~~~~~~~~~~~~~~~~-------------~~~~l~~l~--~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~ 808 (1112)
.|+++.|......+....... .......+. ++++|+.|.+.+|... .+|.++.. +++|+.|+
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~ 424 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN--CSELVSLH 424 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG--CTTCCEEE
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc--CCCCCEEE
Confidence 444444332111110000000 001111222 2567888888877655 56777765 78888888
Q ss_pred EcCcCCCCCCC-CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCC
Q 047598 809 LENCWNCTSLP-SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIF 887 (1112)
Q Consensus 809 L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 887 (1112)
|++|.+.+.+| .++.+++|+.|++++|.....+|..+.. +++|+.|+++++ ......+..+..+
T Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~L~~N---------~l~~~~p~~l~~l 489 (768)
T 3rgz_A 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY------VKTLETLILDFN---------DLTGEIPSGLSNC 489 (768)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG------CTTCCEEECCSS---------CCCSCCCGGGGGC
T ss_pred CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC------CCCceEEEecCC---------cccCcCCHHHhcC
Confidence 88888776666 6788888888888887766566655544 788888888873 3334456667788
Q ss_pred CccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCC---------
Q 047598 888 PRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEE--------- 958 (1112)
Q Consensus 888 p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~--------- 958 (1112)
++|++|++++ |++++.+|..+..+++|+. |++++|.....+|..+..+++|+.|++++|+..+.+|..
T Consensus 490 ~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~--L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 490 TNLNWISLSN-NRLTGEIPKWIGRLENLAI--LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp TTCCEEECCS-SCCCSCCCGGGGGCTTCCE--EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred CCCCEEEccC-CccCCcCChHHhcCCCCCE--EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 8899999988 5788788888777777754 456666666678888888899999999888765555431
Q ss_pred --------------------------------------------------------------CCCCCCCeEEEcCCcccc
Q 047598 959 --------------------------------------------------------------GFPTNLASLVIGGDVKMY 976 (1112)
Q Consensus 959 --------------------------------------------------------------~~~~~L~~L~l~~~~~~~ 976 (1112)
+.+++|+.|++++| ..
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N--~l 644 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN--ML 644 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS--CC
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC--cc
Confidence 11356778888888 56
Q ss_pred cccccccCCCCCCcCEEEEcccCCcccc-ccCcccccccCCCCccEEEecCCCCCCc----CCCCCCCCeEEeecCCCCC
Q 047598 977 KGLIQWGLHRLTALRRLEIDGCHDDEVE-CFPNEEMGVMLPSSLTHLTIAGFKKLKK----LSLMTSLEYLWIKNCPNLA 1051 (1112)
Q Consensus 977 ~~~~~~~~~~l~~L~~L~l~~n~~~~l~-~l~~~~~~~~~~~sL~~L~l~~~~~L~~----l~~l~~L~~L~ls~c~~l~ 1051 (1112)
.+.+|..++++++|+.|+|++|. +. .+|... . -.++|+.|+++++.--.. +..+++|++|++++|+..+
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~---l~g~ip~~l-~--~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHND---ISGSIPDEV-G--DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSC---CCSCCCGGG-G--GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred cccCCHHHhccccCCEEeCcCCc---cCCCCChHH-h--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 67777778888888888888876 33 344322 1 236788888887543322 3467888888888888888
Q ss_pred cCCCCCCCCCccEEEEccCcchH----HhhccCCCCccccccccceeE
Q 047598 1052 SFPELGLPSSLTQLYIDHCPLVK----KECKMDKGKEWSKIAHIPCVE 1095 (1112)
Q Consensus 1052 ~lp~~~~~~~L~~L~l~~c~~l~----~~~~~~~~~~~~ki~~i~~~~ 1095 (1112)
.+|..+.+.++..+.+.+||.+- ..|....+++|++|+|++.++
T Consensus 719 ~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 719 PIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp ECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred cCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 88876666666666666776432 279999999999999999874
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6e-35 Score=363.92 Aligned_cols=461 Identities=17% Similarity=0.133 Sum_probs=262.4
Q ss_pred cCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEee
Q 047598 590 KFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDI 669 (1112)
Q Consensus 590 ~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 669 (1112)
++++|++|++++|.+..... +..+++|++|+|++|.+...++.++++++|++|++++|.....+|..++.+++|++|++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp CCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred cCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 33444444444444322211 24444555555555544432223555555555555555333344445555555555555
Q ss_pred cCCCccccCCCCCCCCCCCCccCeeeeccC-CcccCcccc-ccccccCCeeEEecccCCCChhhhhhccccCccccCceE
Q 047598 670 KGANLLREMPLGMKELKNLRTLSNFIVGKG-EAISGLEDL-KNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLS 747 (1112)
Q Consensus 670 ~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~-~~~~~l~~l-~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 747 (1112)
++|.+...+|.. .+++|++|++..+... ..|..+..+ ++|+.|. ...+.+....+..+.++++|+.|+
T Consensus 255 s~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~--------Ls~n~l~~~~p~~~~~l~~L~~L~ 324 (768)
T 3rgz_A 255 SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD--------LSGNHFYGAVPPFFGSCSLLESLA 324 (768)
T ss_dssp CSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE--------CCSSEEEECCCGGGGGCTTCCEEE
T ss_pred CCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE--------CcCCcCCCccchHHhcCCCccEEE
Confidence 555533333332 4555555555444432 233333322 4444332 111223334455567777777777
Q ss_pred EEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCC-CCCCccCCCCCC-ceeEEEEcCcCCCCCCC-CCCC-
Q 047598 748 LEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGA-RFPSWLGDPLFS-KMEVLKLENCWNCTSLP-SLGL- 823 (1112)
Q Consensus 748 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~-~L~~L~L~~~~~~~~l~-~l~~- 823 (1112)
++.|......+ ...+..+++|+.|++.+|... .+|.++.. ++ +|+.|++++|.+.+.+| .+..
T Consensus 325 L~~n~l~~~ip-----------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 325 LSSNNFSGELP-----------MDTLLKMRGLKVLDLSFNEFSGELPESLTN--LSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp CCSSEEEEECC-----------HHHHTTCTTCCEEECCSSEEEECCCTTHHH--HTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred CCCCcccCcCC-----------HHHHhcCCCCCEEeCcCCccCccccHHHHh--hhcCCcEEEccCCCcCCCcChhhhhc
Confidence 77664311100 011345667888888877654 56766654 54 78888888877765444 4444
Q ss_pred -CCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCC
Q 047598 824 -LSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLS 902 (1112)
Q Consensus 824 -l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~ 902 (1112)
+++|+.|++++|.....+|..+.. +++|+.|+++++ ......+..+..+++|+.|++++ +.++
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~N---------~l~~~~p~~l~~l~~L~~L~L~~-n~l~ 455 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSN------CSELVSLHLSFN---------YLSGTIPSSLGSLSKLRDLKLWL-NMLE 455 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGG------CTTCCEEECCSS---------EEESCCCGGGGGCTTCCEEECCS-SCCC
T ss_pred ccCCccEEECCCCccccccCHHHhc------CCCCCEEECcCC---------cccCcccHHHhcCCCCCEEECCC-Cccc
Confidence 677888888887655566655544 778888888773 22334455567778888888888 5677
Q ss_pred CCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCC-CCCCCCCeEEEcCCccccccccc
Q 047598 903 GKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEE-GFPTNLASLVIGGDVKMYKGLIQ 981 (1112)
Q Consensus 903 ~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~ 981 (1112)
+.+|..+..+++|+. +.+++|.....+|..+..+++|++|++++|...+.+|.. +.+++|+.|++++| ...+..|
T Consensus 456 ~~~p~~~~~l~~L~~--L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p 531 (768)
T 3rgz_A 456 GEIPQELMYVKTLET--LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN--SFSGNIP 531 (768)
T ss_dssp SCCCGGGGGCTTCCE--EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS--CCEEECC
T ss_pred CcCCHHHcCCCCceE--EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC--cccCcCC
Confidence 777777766666653 345555554567777778888888888888766666654 55778888888887 4556667
Q ss_pred ccCCCCCCcCEEEEcccCCccccccCcc----------------------------------------------------
Q 047598 982 WGLHRLTALRRLEIDGCHDDEVECFPNE---------------------------------------------------- 1009 (1112)
Q Consensus 982 ~~~~~l~~L~~L~l~~n~~~~l~~l~~~---------------------------------------------------- 1009 (1112)
..+..+++|+.|++++|... ..+|..
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~--g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFN--GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEE--SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred HHHcCCCCCCEEECCCCccC--CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 77777888888888877521 022221
Q ss_pred ---------cccccCC------CCccEEEecCCCCCCc----CCCCCCCCeEEeecCCCCCcCCC-CCCCCCccEEEEcc
Q 047598 1010 ---------EMGVMLP------SSLTHLTIAGFKKLKK----LSLMTSLEYLWIKNCPNLASFPE-LGLPSSLTQLYIDH 1069 (1112)
Q Consensus 1010 ---------~~~~~~~------~sL~~L~l~~~~~L~~----l~~l~~L~~L~ls~c~~l~~lp~-~~~~~~L~~L~l~~ 1069 (1112)
.+.|.+| ++|+.|+++++.--.. +..+++|+.|++++|...+.+|. ++.+++|+.|++++
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 1112222 3566677766432222 33667777777777766666764 66677777777777
Q ss_pred CcchHHhhccCCCCccccccccceeEeCCeec
Q 047598 1070 CPLVKKECKMDKGKEWSKIAHIPCVEIDDKFI 1101 (1112)
Q Consensus 1070 c~~l~~~~~~~~~~~~~ki~~i~~~~~~~~~~ 1101 (1112)
|.... .....+..+..+..+.+.+|.+
T Consensus 690 N~l~g-----~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 690 NKLDG-----RIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp SCCEE-----CCCGGGGGCCCCSEEECCSSEE
T ss_pred CcccC-----cCChHHhCCCCCCEEECcCCcc
Confidence 75432 1233444555566666655544
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8e-33 Score=337.64 Aligned_cols=490 Identities=17% Similarity=0.106 Sum_probs=306.7
Q ss_pred CceeEEEEEeCCCCCccchhhhccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccc-cccccC
Q 047598 535 ERVRHSSYVRGGYDGRSKFEVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGEL-LVSFED 613 (1112)
Q Consensus 535 ~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~ 613 (1112)
..++++.+..+..... ....+..+++|+.|.+.++. + ..+.+..|.++++|++|+|++|.+..+ |..|++
T Consensus 32 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-------l-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCE-------I-ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCC-------C-CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCc-------c-cccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 4455555544432211 12245556666666655442 1 123344456666666666666666555 455666
Q ss_pred CCcCcEEEcccccccccc-ccccCCCCCcEEeecCCCCCc--ccCccccCCccccEEeecCCCccccCCCCCCCCCCCC-
Q 047598 614 LKLLRYLNLADTMIRTLP-ESTNSLLNLEILILRNCSRLK--KLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLR- 689 (1112)
Q Consensus 614 l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~- 689 (1112)
+++|++|+|++|.+..+| ..++++++|++|++++| .+. .+|..++++++|++|++++|.+....|..++.+++|+
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 666666666666666554 45666666666666665 333 3566666666666666666653333344455554443
Q ss_pred ---ccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCc-----hhh
Q 047598 690 ---TLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQ-----DEV 761 (1112)
Q Consensus 690 ---~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~ 761 (1112)
+|++..+.....+.......+|+.+ .+ ..........+..+.+++.|+.+.+.......... ...
T Consensus 182 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L----~L---~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~ 254 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQAFQGIKLHEL----TL---RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254 (606)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEE----EE---ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG
T ss_pred ccceeeccCCCcceeCcccccCceeeee----ec---cCCccchhHHHHHhccccccccccccccccccCCcccccChHH
Confidence 3444444443332222222233322 11 11111123344445555555555554332111000 000
Q ss_pred hh---------------hHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCC
Q 047598 762 ME---------------EYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSS 826 (1112)
Q Consensus 762 ~~---------------~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 826 (1112)
.. .........+..+++|+.|++.++....+| ++.. +++|++|++++|.+ +.+|.+ .+++
T Consensus 255 ~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~--~~~L~~L~l~~n~l-~~lp~~-~l~~ 329 (606)
T 3vq2_A 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPK--HFKWQSLSIIRCQL-KQFPTL-DLPF 329 (606)
T ss_dssp GTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCT--TCCCSEEEEESCCC-SSCCCC-CCSS
T ss_pred hhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccc--cccCCEEEcccccC-cccccC-CCCc
Confidence 00 000111222566789999999999998888 6654 89999999999998 778877 9999
Q ss_pred cceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCC
Q 047598 827 LRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLP 906 (1112)
Q Consensus 827 L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p 906 (1112)
|+.|++++|..+..+ .+. .+++|+.|+++++.- ... ...+..+..+++|++|++++ +.++ .+|
T Consensus 330 L~~L~l~~n~~~~~~--~~~------~l~~L~~L~ls~n~l-~~~------~~~~~~~~~~~~L~~L~L~~-n~l~-~~~ 392 (606)
T 3vq2_A 330 LKSLTLTMNKGSISF--KKV------ALPSLSYLDLSRNAL-SFS------GCCSYSDLGTNSLRHLDLSF-NGAI-IMS 392 (606)
T ss_dssp CCEEEEESCSSCEEC--CCC------CCTTCCEEECCSSCE-EEE------EECCHHHHCCSCCCEEECCS-CSEE-EEC
T ss_pred cceeeccCCcCccch--hhc------cCCCCCEEECcCCcc-CCC------cchhhhhccCCcccEeECCC-Cccc-cch
Confidence 999999999766654 222 289999999998421 111 00134456899999999999 5677 477
Q ss_pred CCCCCcceeEEeEEEEeccCCcccCc-ccCCCCCCcCEEEEecCCCCcccCCC-CCCCCCCeEEEcCCcccccc-ccccc
Q 047598 907 ELLPSLETLVVATFVIANCEKLEALP-NDMHRLNFLEHLRIGQCPSILSFPEE-GFPTNLASLVIGGDVKMYKG-LIQWG 983 (1112)
Q Consensus 907 ~~~~~L~~L~~~~L~~~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~ 983 (1112)
..+..+.+|+. +.++++......| ..+..+++|++|++++|......|.. +.+++|+.|++++| ...+ ..+..
T Consensus 393 ~~~~~l~~L~~--L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~ 468 (606)
T 3vq2_A 393 ANFMGLEELQH--LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN--SFKDNTLSNV 468 (606)
T ss_dssp CCCTTCTTCCE--EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC--EEGGGEECSC
T ss_pred hhccCCCCCCe--eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC--cCCCcchHHh
Confidence 77777777754 4455554434444 47889999999999999766656554 56899999999999 4444 46778
Q ss_pred CCCCCCcCEEEEcccCCccccccCcccccccCCCCccEEEecCCCCC----CcCCCCCCCCeEEeecCCCCCcCCC-CCC
Q 047598 984 LHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKKL----KKLSLMTSLEYLWIKNCPNLASFPE-LGL 1058 (1112)
Q Consensus 984 ~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L----~~l~~l~~L~~L~ls~c~~l~~lp~-~~~ 1058 (1112)
+..+++|+.|++++|. +..++...+. ..++|+.|+++++.-. ..+..+++|++|+|++|+ ++.+|. +..
T Consensus 469 ~~~l~~L~~L~Ls~n~---l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~ 542 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQ---LEQISWGVFD--TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQH 542 (606)
T ss_dssp CTTCTTCCEEECTTSC---CCEECTTTTT--TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGG
T ss_pred hccCCCCCEEECCCCc---CCccChhhhc--ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhh
Confidence 9999999999999997 5555544443 2478999999987432 234589999999999996 557775 555
Q ss_pred CC-CccEEEEccCcch
Q 047598 1059 PS-SLTQLYIDHCPLV 1073 (1112)
Q Consensus 1059 ~~-~L~~L~l~~c~~l 1073 (1112)
++ +|+.|++++||..
T Consensus 543 l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSVA 558 (606)
T ss_dssp SCTTCCEEECCSCCCC
T ss_pred hcccCcEEEccCCCcc
Confidence 65 6999999999865
No 7
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=340.56 Aligned_cols=305 Identities=22% Similarity=0.285 Sum_probs=232.0
Q ss_pred CCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccc-cccCCCC-ceeEEEEeCCCCC
Q 047598 176 TERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSL-NAKDFKF-DIKAWVCISDVFD 253 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~~~F-~~~~wv~~~~~~~ 253 (1112)
..+.||||+.++++|.++|.. ..+..++|+|+||||+||||||++++++.++ . .+| +.++|++++.. +
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~v~wv~~~~~-~ 191 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSK------LKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLE---GCFPGGVHWVSVGKQ-D 191 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTT------STTSCEEEEEECCTTSSHHHHHHHHHCCHHHHH---HHCTTCEEEEEEESC-C
T ss_pred CCCeecccHHHHHHHHHHHhc------ccCCCceEEEEcCCCCCHHHHHHHHHhchhHHH---hhCCCceEEEECCCC-c
Confidence 345799999999999999975 2345789999999999999999999988644 4 668 58999999876 3
Q ss_pred HHHHHHHH---HHHhcCC----CCCCCChHHHHHHHHHHhCC--CcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEE
Q 047598 254 VLSISKAL---LESITRK----PCHLNTLNEVQVDLKTAVDG--KRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMII 324 (1112)
Q Consensus 254 ~~~~~~~i---l~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 324 (1112)
...+...+ +..++.. .....+.+.....+...+.+ +++||||||||+. ..+ .. ..+|++|||
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l----~~---l~~~~~ilv 262 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVL----KA---FDSQCQILL 262 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHH----HT---TCSSCEEEE
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHH----HH---hcCCCeEEE
Confidence 33333333 4445421 12335667777788887766 7999999999863 222 22 257899999
Q ss_pred EcCChhhhhhcCCCceeeC---CCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhhcCCCH
Q 047598 325 TTRHSHVASTMGPIKHYNL---KRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLLRTTRC 401 (1112)
Q Consensus 325 TTR~~~v~~~~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~ 401 (1112)
|||+..++..+. ...+.+ ++|+.+||++||...++... ....+.+.+|+++|+|+||||.++|+.++...
T Consensus 263 TsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~- 335 (591)
T 1z6t_A 263 TTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP- 335 (591)
T ss_dssp EESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-
T ss_pred ECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-
Confidence 999999886644 233444 68999999999999886421 12234678999999999999999999998873
Q ss_pred HHHHHHHhccccCC----C-----CCCCchHHHHHHhcCCchHHHHHHhHhhcCCCCceechHHHHHHHHhCCcccccCC
Q 047598 402 DLWEDILDSKIWDL----P-----QQSGILPVLRLSYHHLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKN 472 (1112)
Q Consensus 402 ~~w~~~l~~~~~~~----~-----~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~ 472 (1112)
..|..+++...... . ....+..++..||+.||++.|.||+++|+||+++.|+.+.++..|.++
T Consensus 336 ~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------- 407 (591)
T 1z6t_A 336 NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------- 407 (591)
T ss_dssp TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC--------
T ss_pred hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC--------
Confidence 35776665422111 1 124688999999999999999999999999999999999999999542
Q ss_pred CchHHHHHHHHHHHHhhCCccccccCC-CccceechhHHHHHHHhhc
Q 047598 473 NEQLEDLGSQCFHDLVSRSIFQPSSRN-SCKFVMHDLVHDLAQLVSG 518 (1112)
Q Consensus 473 ~~~~~~~~~~~~~~L~~~~l~~~~~~~-~~~~~~H~lv~~~~~~~~~ 518 (1112)
.+.++.++++|+++||++....+ ...|+||+++|++++....
T Consensus 408 ----~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 ----TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp ----HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred ----HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 24578899999999999865432 3479999999999998743
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-32 Score=335.01 Aligned_cols=492 Identities=16% Similarity=0.119 Sum_probs=300.8
Q ss_pred CCceeEEEEEeCCCCCccchhhhccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccc-ccccc
Q 047598 534 FERVRHSSYVRGGYDGRSKFEVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGEL-LVSFE 612 (1112)
Q Consensus 534 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~ 612 (1112)
+..++++.+..+..... ....+..+++|++|.+.++. + ..+.+..|.++++|++|+|++|.+..+ |..|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~-------i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQ-------I-YWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp CTTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCC-------C-CEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred CCcCcEEEccCCccCcC-ChhHhccCccceEEECCCCc-------c-ceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 44566666655543321 23456677777777776553 1 223445567777777777777777554 45677
Q ss_pred CCCcCcEEEccccccccc-cccccCCCCCcEEeecCCCCCcccC-ccccCCccccEEeecCCCccccCCCCCCCCCCCC-
Q 047598 613 DLKLLRYLNLADTMIRTL-PESTNSLLNLEILILRNCSRLKKLP-SKMRNLINLHHLDIKGANLLREMPLGMKELKNLR- 689 (1112)
Q Consensus 613 ~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~- 689 (1112)
++++|++|+|++|.+..+ |..++++++|++|++++| .+..++ ..+..+++|++|++++|.+....|..++.+++|+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 777777777777777765 456777777777777776 444431 2344477777777777764333344466667776
Q ss_pred -ccCeeeeccCCcccCccccccccccCC-------------------eeEEecccCCCChhhhhhccccCcc--ccCceE
Q 047598 690 -TLSNFIVGKGEAISGLEDLKNLKFLGG-------------------ELCISGLENVNDSQKVREATLCEKE--NLKTLS 747 (1112)
Q Consensus 690 -~L~~~~~~~~~~~~~l~~l~~L~~L~~-------------------~l~i~~l~~~~~~~~~~~~~l~~~~--~L~~L~ 747 (1112)
.|++.++.....+........|+.+.. .+.+....... ........+..+. +|+.|+
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~-~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD-DEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSC-CCCCCGGGGGGGGGSEEEEEE
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccc-ccccChhHhchhhcCceeEEE
Confidence 555555544333222222222222210 00000000000 0000011111111 455666
Q ss_pred EEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCC
Q 047598 748 LEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSS 826 (1112)
Q Consensus 748 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 826 (1112)
++.+... ......+..+++|+.|+++++....+|.++.. +++|++|++++|.+....| .++.+++
T Consensus 261 l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 261 LQKHYFF------------NISSNTFHCFSGLQELDLTATHLSELPSGLVG--LSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp CTTCCCS------------SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCS--CTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred eecCccC------------ccCHHHhccccCCCEEeccCCccCCCChhhcc--cccCCEEECccCCcCcCchhhhhccCc
Confidence 6554431 11122355567888888888888888887765 7888888888888766555 6788888
Q ss_pred cceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCc--CCcccCCCccceEeEecCCCCCCC
Q 047598 827 LRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDH--ADRVEIFPRLHKLSIMECPKLSGK 904 (1112)
Q Consensus 827 L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--~~~~~~~p~L~~L~l~~c~~L~~~ 904 (1112)
|+.|++++|.....++....+. +++|+.|+++++.- .... +..+..+++|++|++++ +++++.
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~-----l~~L~~L~l~~n~l---------~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~ 391 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLEN-----LENLRELDLSHDDI---------ETSDCCNLQLRNLSHLQSLNLSY-NEPLSL 391 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTT-----CTTCCEEECCSSCC---------CEEEESTTTTTTCTTCCEEECCS-CSCEEE
T ss_pred CCEEECCCCCcccccchhhhhc-----cCcCCEEECCCCcc---------ccccCcchhcccCCCCCEEECCC-CcCCcC
Confidence 8888888876655555543332 78888888887321 1111 33457788899999988 577766
Q ss_pred CCCCCCCcceeEEeEEEEeccCCcccCcc-cCCCCCCcCEEEEecCCCCcccCCC-CCCCCCCeEEEcCCcccccc-ccc
Q 047598 905 LPELLPSLETLVVATFVIANCEKLEALPN-DMHRLNFLEHLRIGQCPSILSFPEE-GFPTNLASLVIGGDVKMYKG-LIQ 981 (1112)
Q Consensus 905 ~p~~~~~L~~L~~~~L~~~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~ 981 (1112)
.|..+..+++|+. +.++++......|. .+..+++|++|++++|......+.. +.+++|+.|++++|.-.... ..+
T Consensus 392 ~~~~~~~l~~L~~--L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 392 KTEAFKECPQLEL--LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp CTTTTTTCTTCSE--EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred CHHHhcCCccCCe--EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence 6777766666653 33455443333333 3778889999999988655544443 55788999999988421101 122
Q ss_pred ccCCCCCCcCEEEEcccCCccccccCcccccccCCCCccEEEecCCCCC----CcCCCCCCCCeEEeecCCCCCcCCC-C
Q 047598 982 WGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKKL----KKLSLMTSLEYLWIKNCPNLASFPE-L 1056 (1112)
Q Consensus 982 ~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L----~~l~~l~~L~~L~ls~c~~l~~lp~-~ 1056 (1112)
..+..+++|+.|++++|. +..++...+. ..++|+.|+++++.-- ..+..+++| .|++++|+.....|. +
T Consensus 470 ~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~ 543 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCD---LSSIDQHAFT--SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543 (606)
T ss_dssp CGGGGCTTCCEEECTTSC---CCEECTTTTT--TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH
T ss_pred hhhccCCCccEEECCCCc---cCccChhhhc--cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhc
Confidence 457788899999999886 5555444432 2468889998876322 234578888 899999966655554 5
Q ss_pred CCCCCccEEEEccCcch
Q 047598 1057 GLPSSLTQLYIDHCPLV 1073 (1112)
Q Consensus 1057 ~~~~~L~~L~l~~c~~l 1073 (1112)
..+++|+.|++++||..
T Consensus 544 ~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 544 PILSQQRTINLRQNPLD 560 (606)
T ss_dssp HHHHTSSEEECTTCCEE
T ss_pred ccCCCCCEEeCCCCCcc
Confidence 66788999999998864
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.6e-31 Score=328.80 Aligned_cols=519 Identities=16% Similarity=0.110 Sum_probs=270.6
Q ss_pred CCceeEEEEEeCCCCCccchhhhccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccc-ccc
Q 047598 534 FERVRHSSYVRGGYDGRSKFEVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLV-SFE 612 (1112)
Q Consensus 534 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~-~~~ 612 (1112)
+..++++.+..+..... ....+..+++|++|.+.++. + ..+.+..|.++++|++|+|++|.+..+|. .|.
T Consensus 24 ~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-------l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNT-------I-SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp CTTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSC-------C-CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCc-------c-CccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 45677787776654332 23456778888888876653 1 23345567778888888888888888875 588
Q ss_pred CCCcCcEEEcccccccccc-ccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCC-CC--CCCCCC
Q 047598 613 DLKLLRYLNLADTMIRTLP-ESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPL-GM--KELKNL 688 (1112)
Q Consensus 613 ~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i--~~l~~L 688 (1112)
++++|++|+|++|.+..+| ..|+++++|++|++++|......|..++++++|++|++++|. +..++. .+ ..+++|
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSL 173 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEE
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccc
Confidence 8888888888888888776 467888888888888885444556667888888888888887 344433 22 345778
Q ss_pred CccCeeeeccCCc-ccCccccccccccCCeeEEeccc-----------------------CCCChhhhhhccccCccc--
Q 047598 689 RTLSNFIVGKGEA-ISGLEDLKNLKFLGGELCISGLE-----------------------NVNDSQKVREATLCEKEN-- 742 (1112)
Q Consensus 689 ~~L~~~~~~~~~~-~~~l~~l~~L~~L~~~l~i~~l~-----------------------~~~~~~~~~~~~l~~~~~-- 742 (1112)
+.|++..+..... +..+..+.+|+.+. +.+.. ..+......+..+.++..
T Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~----l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 174 KKLELSSNQIKEFSPGCFHAIGRLFGLF----LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp SEEECTTCCCCCBCTTGGGGSSEECEEE----CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred cEEECCCCcccccChhhhhhhhhhhhhh----ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 8888777664433 22344444443331 10000 001111122222333322
Q ss_pred cCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCC-CCccCCCCCCceeEEEEcCcCCCC-----
Q 047598 743 LKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARF-PSWLGDPLFSKMEVLKLENCWNCT----- 816 (1112)
Q Consensus 743 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~----- 816 (1112)
|+.|++++|.. .......+..+++|+.|++.++..... |.++.. +++|+.|++++|....
T Consensus 250 L~~L~Ls~n~l------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~~~~~~~~~~~ 315 (680)
T 1ziw_A 250 LTMLDLSYNNL------------NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG--LFNVRYLNLKRSFTKQSISLA 315 (680)
T ss_dssp CCEEECTTSCC------------CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT--CTTCCEEECTTCBCCC-----
T ss_pred CCEEECCCCCc------------CccCcccccCcccccEeeCCCCccCccChhhhcC--CCCccEEeccchhhhcccccc
Confidence 44444444432 011112233445556666655544333 223333 5566666665543221
Q ss_pred CCC-----CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCC-----------------ccccc--c
Q 047598 817 SLP-----SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLP-----------------EWEYW--D 872 (1112)
Q Consensus 817 ~l~-----~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~-----------------~l~~~--~ 872 (1112)
.+| .++.+++|+.|++++|......+..+.+ +++|+.|+++++. .++.+ .
T Consensus 316 ~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~ 389 (680)
T 1ziw_A 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG------LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389 (680)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT------CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred cccccChhhcccCCCCCEEECCCCccCCCChhHhcc------ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence 122 3555666666666665433222222222 6777777776532 11111 0
Q ss_pred cccCCCCcCCcccCCCccceEeEecCCCCCCCCC-CCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCC
Q 047598 873 TNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLP-ELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPS 951 (1112)
Q Consensus 873 ~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p-~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~ 951 (1112)
.+......+..+..+++|+.|++++ |.+++.+| ..+..+..|+. +.++++......+..+..+++|+.|++++|..
T Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~l~~L~~--L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 390 KNKISKIESDAFSWLGHLEVLDLGL-NEIGQELTGQEWRGLENIFE--IYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCS-SCCEEECCSGGGTTCTTCCE--EECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCeEChhhhhCCCCCCEEeCCC-CcCccccCcccccCcccccE--EecCCCCcceeChhhhhcCcccccchhccccc
Confidence 1111112233344455555555555 34443333 23333444332 22333332222334455555666666655533
Q ss_pred C--cccCCC-CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCcccccc------cCCCCccEE
Q 047598 952 I--LSFPEE-GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGV------MLPSSLTHL 1022 (1112)
Q Consensus 952 l--~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~------~~~~sL~~L 1022 (1112)
. ..+|.. ..+++|+.|++++| ......+..+..+++|+.|++++|. +..++...+.+ ...++|+.|
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N--~l~~i~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNN--NIANINDDMLEGLEKLEILDLQHNN---LARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSC---CGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred cccccCCcccccCCCCCEEECCCC--CCCcCChhhhccccccCEEeCCCCC---ccccchhhccCCcchhhcCCCCCCEE
Confidence 2 222322 34566666666666 3334444456666666666666665 33332211100 113566667
Q ss_pred EecCCCCCCc-----CCCCCCCCeEEeecCCCCCcCCC--CCCCCCccEEEEccCcchHHhhccCCCCccc-ccccccee
Q 047598 1023 TIAGFKKLKK-----LSLMTSLEYLWIKNCPNLASFPE--LGLPSSLTQLYIDHCPLVKKECKMDKGKEWS-KIAHIPCV 1094 (1112)
Q Consensus 1023 ~l~~~~~L~~-----l~~l~~L~~L~ls~c~~l~~lp~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-ki~~i~~~ 1094 (1112)
+++++ .++. +..+++|+.|++++| .++.+|. +..+++|+.|++++|..-.- ....+. .++.+..+
T Consensus 542 ~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~~~~~L~~l 614 (680)
T 1ziw_A 542 NLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSV-----EKKVFGPAFRNLTEL 614 (680)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCCCBC-----CHHHHHHHHTTCSEE
T ss_pred ECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcCCcc-----ChhHhcccccccCEE
Confidence 66653 2322 335667777777776 3344543 45667777777777743210 001111 34566666
Q ss_pred EeCCeec
Q 047598 1095 EIDDKFI 1101 (1112)
Q Consensus 1095 ~~~~~~~ 1101 (1112)
.+.+|.+
T Consensus 615 ~l~~N~~ 621 (680)
T 1ziw_A 615 DMRFNPF 621 (680)
T ss_dssp ECTTCCC
T ss_pred EccCCCc
Confidence 7666553
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-31 Score=331.64 Aligned_cols=484 Identities=16% Similarity=0.112 Sum_probs=320.5
Q ss_pred CCceeEEEEEeCCCCCccchhhhccCCCcceeccccccCCcccccccccccccccccCCcccEEEeccccccccc-cccc
Q 047598 534 FERVRHSSYVRGGYDGRSKFEVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELL-VSFE 612 (1112)
Q Consensus 534 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~ 612 (1112)
...++.+.+..+.... .....+..+++|+.|.+.++. + ..++...|..+++|++|+|++|.+..+| ..|+
T Consensus 48 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~-------l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 118 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNE-------L-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118 (680)
T ss_dssp GTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSC-------C-CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTT
T ss_pred CCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCc-------c-CccChhhhccCCCCCEEECCCCccCccChhHcc
Confidence 4567888876654332 224567889999999987764 1 2455567899999999999999998887 6799
Q ss_pred CCCcCcEEEccccccccc-cccccCCCCCcEEeecCCCCCcccCc-cc--cCCccccEEeecCCCccccCCCCCCCCCCC
Q 047598 613 DLKLLRYLNLADTMIRTL-PESTNSLLNLEILILRNCSRLKKLPS-KM--RNLINLHHLDIKGANLLREMPLGMKELKNL 688 (1112)
Q Consensus 613 ~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i--~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L 688 (1112)
++++|++|+|++|.+..+ |..++++++|++|++++| .+..++. .+ ..+++|++|++++|.+....|..++.+.+|
T Consensus 119 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred ccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence 999999999999998865 556899999999999998 5666654 33 356899999999998544444445555444
Q ss_pred C---------------------------ccCeeeeccCC-cccCcccccc--ccccCCeeEEecccCCCChhhhhhcccc
Q 047598 689 R---------------------------TLSNFIVGKGE-AISGLEDLKN--LKFLGGELCISGLENVNDSQKVREATLC 738 (1112)
Q Consensus 689 ~---------------------------~L~~~~~~~~~-~~~~l~~l~~--L~~L~~~l~i~~l~~~~~~~~~~~~~l~ 738 (1112)
+ .|++.++.... .+..+..+.. |+.|. ...+.+....+..+.
T Consensus 198 ~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~--------Ls~n~l~~~~~~~~~ 269 (680)
T 1ziw_A 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD--------LSYNNLNVVGNDSFA 269 (680)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE--------CTTSCCCEECTTTTT
T ss_pred hhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE--------CCCCCcCccCccccc
Confidence 4 44443333222 1223333332 44332 112223334445577
Q ss_pred CccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCC------CCCC----ccCCCCCCceeEEE
Q 047598 739 EKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGA------RFPS----WLGDPLFSKMEVLK 808 (1112)
Q Consensus 739 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~------~~p~----~~~~~~l~~L~~L~ 808 (1112)
.+++|+.|+++++... ......+..+++|+.|++.++... .+|. .+. .+++|++|+
T Consensus 270 ~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~--~l~~L~~L~ 335 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQ------------HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ--WLKCLEHLN 335 (680)
T ss_dssp TCTTCCEEECCSCCBS------------EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTT--TCTTCCEEE
T ss_pred CcccccEeeCCCCccC------------ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcc--cCCCCCEEE
Confidence 7888888888776541 111223444555666666543221 2222 222 255666666
Q ss_pred EcCcCCCCCCC-CCCCCCCcceEEecCCC----------------------------CceecCccccCCCCcccCcccce
Q 047598 809 LENCWNCTSLP-SLGLLSSLRELTIQGLT----------------------------KLKSIGSEVYGKGFSKPFQSLEI 859 (1112)
Q Consensus 809 L~~~~~~~~l~-~l~~l~~L~~L~L~~~~----------------------------~l~~i~~~~~~~~~~~~~~~L~~ 859 (1112)
+++|.+.+..+ .+..+++|++|++++|. .....+..+ ..+++|+.
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~ 409 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF------SWLGHLEV 409 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT------TTCTTCCE
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh------hCCCCCCE
Confidence 66665554433 35556666666665543 222222222 12677777
Q ss_pred eecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCC
Q 047598 860 LSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLN 939 (1112)
Q Consensus 860 L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~ 939 (1112)
|++++.. ..+...+..+..+++|++|++++ +++++..+..+..+..|+.+++.-+.+..+..+|..+..++
T Consensus 410 L~L~~N~--------l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 410 LDLGLNE--------IGQELTGQEWRGLENIFEIYLSY-NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp EECCSSC--------CEEECCSGGGTTCTTCCEEECCS-CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred EeCCCCc--------CccccCcccccCcccccEEecCC-CCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 7777632 11112234567899999999999 57776667777777777654544444555567888999999
Q ss_pred CcCEEEEecCCCCcccCCC--CCCCCCCeEEEcCCccccccc--------ccccCCCCCCcCEEEEcccCCccccccCcc
Q 047598 940 FLEHLRIGQCPSILSFPEE--GFPTNLASLVIGGDVKMYKGL--------IQWGLHRLTALRRLEIDGCHDDEVECFPNE 1009 (1112)
Q Consensus 940 ~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~ 1009 (1112)
+|+.|++++|... .++.. ..+++|+.|++++|. .... ....+.++++|+.|++++|. +..+|..
T Consensus 481 ~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~---l~~i~~~ 554 (680)
T 1ziw_A 481 NLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNN--LARLWKHANPGGPIYFLKGLSHLHILNLESNG---FDEIPVE 554 (680)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC--CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC---CCCCCTT
T ss_pred CCCEEECCCCCCC-cCChhhhccccccCEEeCCCCC--ccccchhhccCCcchhhcCCCCCCEEECCCCC---CCCCCHH
Confidence 9999999999644 45543 568999999999994 2221 12237899999999999987 7778876
Q ss_pred cccccCCCCccEEEecCCCCCCcCC-----CCCCCCeEEeecCCCCCcCCC--CC-CCCCccEEEEccCcchH
Q 047598 1010 EMGVMLPSSLTHLTIAGFKKLKKLS-----LMTSLEYLWIKNCPNLASFPE--LG-LPSSLTQLYIDHCPLVK 1074 (1112)
Q Consensus 1010 ~~~~~~~~sL~~L~l~~~~~L~~l~-----~l~~L~~L~ls~c~~l~~lp~--~~-~~~~L~~L~l~~c~~l~ 1074 (1112)
.|.+ .++|+.|++++ +.++.++ .+++|+.|++++| .++.++. +. .+++|+.|++++||..-
T Consensus 555 ~~~~--l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 555 VFKD--LFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp TTTT--CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred Hccc--ccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCccc
Confidence 6543 47899999976 3555544 6799999999999 4555553 33 57899999999998753
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-31 Score=324.81 Aligned_cols=495 Identities=13% Similarity=0.073 Sum_probs=332.0
Q ss_pred CCcceeccccccCCcccccccccccccccccCCcccEEEecccccccc-cccccCCCcCcEEEccccccccc-cccccCC
Q 047598 560 ENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGEL-LVSFEDLKLLRYLNLADTMIRTL-PESTNSL 637 (1112)
Q Consensus 560 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~n~i~~l-p~~i~~L 637 (1112)
.+++.|.+.++. + ..+++..|.++++|++|+|++|.+..+ |..|.++++|++|+|++|.+..+ |..|+++
T Consensus 33 ~~l~~L~Ls~n~-------i-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 33 NSTECLEFSFNV-------L-PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TTCCEEECTTCC-------C-SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CcCcEEEccCCc-------c-CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 467888877654 2 234556688899999999999988766 57789999999999999988865 6678999
Q ss_pred CCCcEEeecCCCCCccc-CccccCCccccEEeecCCCccccCC-CCCCCCCCCCccCeeeeccCCc-ccCcccccccccc
Q 047598 638 LNLEILILRNCSRLKKL-PSKMRNLINLHHLDIKGANLLREMP-LGMKELKNLRTLSNFIVGKGEA-ISGLEDLKNLKFL 714 (1112)
Q Consensus 638 ~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~-~~~l~~l~~L~~L 714 (1112)
++|++|++++| .+..+ |..++++++|++|++++|.+ ..++ ..+..+++|++|++.++..... +..+..+.+|+.+
T Consensus 105 ~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 105 KALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHI-SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp TTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCC-CCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred ccccEeecccc-CcccCCcchhccCCcccEEECCCCcc-cccCcccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 99999999998 56555 66788999999999999984 4432 3344589999999888776543 2335555555522
Q ss_pred CCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchh-----------------hhhhHHHhhccCCCCCC
Q 047598 715 GGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDE-----------------VMEEYAVGVLDKLQPHK 777 (1112)
Q Consensus 715 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----------------~~~~~~~~~l~~l~~~~ 777 (1112)
.+.+. .+......+..+ ....|+.|+++++......... .........+..+.+ .
T Consensus 183 --~L~l~----~n~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~-~ 254 (606)
T 3t6q_A 183 --SLNLN----GNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE-M 254 (606)
T ss_dssp --EEECT----TCCCCEECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG-S
T ss_pred --EEecC----CCccCccChhHh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc-C
Confidence 11111 122222222222 2346777776654310000000 000000011111111 2
Q ss_pred CCceEEEeccCCCCCCCc-cCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceecCccccCCCCcccCcc
Q 047598 778 CIKNLTIKQYNGARFPSW-LGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQS 856 (1112)
Q Consensus 778 ~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 856 (1112)
.++.|++.++....++.. +.. +++|++|++++|.+....+.++.+++|++|++++|......+..+.. +++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~ 326 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHC--FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASN------FPS 326 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTT--CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG------CTT
T ss_pred ceeEEEeecCccCccCHHHhcc--ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhc------cCc
Confidence 678888988888777665 443 89999999999987644347889999999999987644333333333 899
Q ss_pred cceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCC--CCCCCCcceeEEeEEEEeccCCcccCccc
Q 047598 857 LEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKL--PELLPSLETLVVATFVIANCEKLEALPND 934 (1112)
Q Consensus 857 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~--p~~~~~L~~L~~~~L~~~~~~~l~~lp~~ 934 (1112)
|+.|+++++.. ........+..+++|++|++++ +.+++.. |..+..+++|+. +.++++......|..
T Consensus 327 L~~L~l~~n~~--------~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~--L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 327 LTHLSIKGNTK--------RLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQS--LNLSYNEPLSLKTEA 395 (606)
T ss_dssp CSEEECCSCSS--------CCBCCSSTTTTCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCE--EECCSCSCEEECTTT
T ss_pred CCEEECCCCCc--------ccccchhhhhccCcCCEEECCC-CccccccCcchhcccCCCCCE--EECCCCcCCcCCHHH
Confidence 99999988422 2122333467899999999999 6777544 666777777754 445555544455777
Q ss_pred CCCCCCcCEEEEecCCCCcccCCC--CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCc-ccc
Q 047598 935 MHRLNFLEHLRIGQCPSILSFPEE--GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPN-EEM 1011 (1112)
Q Consensus 935 l~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~-~~~ 1011 (1112)
+..+++|++|++++|......+.. ..+++|+.|++++| ......+..+..+++|++|++++|..... .++. ..+
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~ 472 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS--LLDISSEQLFDGLPALQHLNLQGNHFPKG-NIQKTNSL 472 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC--CCBTTCTTTTTTCTTCCEEECTTCBCGGG-EECSSCGG
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC--ccCCcCHHHHhCCCCCCEEECCCCCCCcc-ccccchhh
Confidence 889999999999999665554443 56789999999999 45556677788999999999999873211 1221 112
Q ss_pred cccCCCCccEEEecCCCCC----CcCCCCCCCCeEEeecCCCCCcCCC-CCCCCCccEEEEccCcchHHhhccCCCCccc
Q 047598 1012 GVMLPSSLTHLTIAGFKKL----KKLSLMTSLEYLWIKNCPNLASFPE-LGLPSSLTQLYIDHCPLVKKECKMDKGKEWS 1086 (1112)
Q Consensus 1012 ~~~~~~sL~~L~l~~~~~L----~~l~~l~~L~~L~ls~c~~l~~lp~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 1086 (1112)
...++|+.|++++|.-- ..+..+++|++|++++|+.....|. +..+++| .|++++|.... .....+.
T Consensus 473 --~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~-----~~~~~~~ 544 (606)
T 3t6q_A 473 --QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI-----ILPSLLP 544 (606)
T ss_dssp --GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC-----CCGGGHH
T ss_pred --ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc-----cCHhhcc
Confidence 22478999999987432 2345789999999999977666664 7788899 99999996542 1222345
Q ss_pred cccccceeEeCCeecc
Q 047598 1087 KIAHIPCVEIDDKFIY 1102 (1112)
Q Consensus 1087 ki~~i~~~~~~~~~~~ 1102 (1112)
.++.+..+.+.+|.+.
T Consensus 545 ~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 545 ILSQQRTINLRQNPLD 560 (606)
T ss_dssp HHHTSSEEECTTCCEE
T ss_pred cCCCCCEEeCCCCCcc
Confidence 6677888888887653
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-31 Score=327.67 Aligned_cols=476 Identities=16% Similarity=0.101 Sum_probs=339.9
Q ss_pred CCcceeccccccCCcccccccccccccccccCCcccEEEecccccccc-cccccCCCcCcEEEccccccccc-cccccCC
Q 047598 560 ENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGEL-LVSFEDLKLLRYLNLADTMIRTL-PESTNSL 637 (1112)
Q Consensus 560 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~n~i~~l-p~~i~~L 637 (1112)
++++.|.+.++. + ..+++..|.++++|++|+|++|.+..+ |..|.++++|++|+|++|.+..+ |..|+++
T Consensus 32 ~~l~~L~Ls~n~-------l-~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 32 SSTKNIDLSFNP-------L-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp TTCCEEECTTSC-------C-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCcCEEECCCCC-------c-CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 678899887764 1 344556789999999999999999887 56799999999999999999987 7889999
Q ss_pred CCCcEEeecCCCCCcccC-ccccCCccccEEeecCCCccc-cCCCCCCCCCCCCccCeeeeccCCc-ccCcccccccccc
Q 047598 638 LNLEILILRNCSRLKKLP-SKMRNLINLHHLDIKGANLLR-EMPLGMKELKNLRTLSNFIVGKGEA-ISGLEDLKNLKFL 714 (1112)
Q Consensus 638 ~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~~~~~~~~~~-~~~l~~l~~L~~L 714 (1112)
++|++|++++| .+..+| ..++++++|++|++++|.+.. .+|..++++++|++|++.++..... +..+..+.+|+..
T Consensus 104 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 104 TSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182 (606)
T ss_dssp TTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred ccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence 99999999998 566555 679999999999999998543 5799999999999999998876554 3446666665531
Q ss_pred CCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCc--------------
Q 047598 715 GGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIK-------------- 780 (1112)
Q Consensus 715 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~-------------- 780 (1112)
...+.+. .+.+.......+.. .+|+.|+++++..... .....+..+..++
T Consensus 183 l~~L~l~----~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~-----------~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 183 NLSLDMS----LNPIDFIQDQAFQG-IKLHELTLRGNFNSSN-----------IMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp CCEEECT----TCCCCEECTTTTTT-CEEEEEEEESCCSCHH-----------HHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred cceeecc----CCCcceeCcccccC-ceeeeeeccCCccchh-----------HHHHHhccccccccccccccccccCCc
Confidence 1122221 12233333333333 3899999998864210 0001111122222
Q ss_pred ------------------eEEE-eccCCCC-CCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCcee
Q 047598 781 ------------------NLTI-KQYNGAR-FPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKS 840 (1112)
Q Consensus 781 ------------------~L~l-~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~ 840 (1112)
.+.+ ..+.... .|. +. .+++|+.|++++|.+ ..+|.+..+++|+.|++++|.. +.
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~--~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~ 321 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FH--CLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQ 321 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CG--GGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SS
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccc-cc--cCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-cc
Confidence 2222 1111111 222 32 378999999999986 5567899999999999999876 66
Q ss_pred cCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCC--CCCCCCCcceeEEe
Q 047598 841 IGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGK--LPELLPSLETLVVA 918 (1112)
Q Consensus 841 i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~--~p~~~~~L~~L~~~ 918 (1112)
+| .+ . +++|+.|+++++..+... .+..+++|++|++++ +++++. +|..+..+..|+.
T Consensus 322 lp-~~-~------l~~L~~L~l~~n~~~~~~-----------~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~L~~- 380 (606)
T 3vq2_A 322 FP-TL-D------LPFLKSLTLTMNKGSISF-----------KKVALPSLSYLDLSR-NALSFSGCCSYSDLGTNSLRH- 380 (606)
T ss_dssp CC-CC-C------CSSCCEEEEESCSSCEEC-----------CCCCCTTCCEEECCS-SCEEEEEECCHHHHCCSCCCE-
T ss_pred cc-cC-C------CCccceeeccCCcCccch-----------hhccCCCCCEEECcC-CccCCCcchhhhhccCCcccE-
Confidence 66 33 3 899999999986443322 336799999999999 677754 3555555555543
Q ss_pred EEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCC--CCCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEc
Q 047598 919 TFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPE--EGFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEID 996 (1112)
Q Consensus 919 ~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 996 (1112)
+.++++. +..+|..+..+++|+.|++++|......+. ...+++|+.|++++| ...+..+..+..+++|++|+++
T Consensus 381 -L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 381 -LDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT--NTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp -EECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS--CCEECCTTTTTTCTTCCEEECT
T ss_pred -eECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC--CCCccchhhhcCCCCCCEEECC
Confidence 3344443 556778899999999999999966655552 256899999999999 4555667789999999999999
Q ss_pred ccCCccccc--cCcccccccCCCCccEEEecCCCCC----CcCCCCCCCCeEEeecCCCCCcCCC-CCCCCCccEEEEcc
Q 047598 997 GCHDDEVEC--FPNEEMGVMLPSSLTHLTIAGFKKL----KKLSLMTSLEYLWIKNCPNLASFPE-LGLPSSLTQLYIDH 1069 (1112)
Q Consensus 997 ~n~~~~l~~--l~~~~~~~~~~~sL~~L~l~~~~~L----~~l~~l~~L~~L~ls~c~~l~~lp~-~~~~~~L~~L~l~~ 1069 (1112)
+|. +.. +|.. + ...++|+.|++++|.-- ..+..+++|++|++++|+.....|. +..+++|+.|++++
T Consensus 457 ~n~---l~~~~~~~~-~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 457 GNS---FKDNTLSNV-F--ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp TCE---EGGGEECSC-C--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred CCc---CCCcchHHh-h--ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence 986 443 3332 2 23578999999987432 2345899999999999977666664 78899999999999
Q ss_pred CcchHHhhccCCCCcccccc-ccceeEeCCeecc
Q 047598 1070 CPLVKKECKMDKGKEWSKIA-HIPCVEIDDKFIY 1102 (1112)
Q Consensus 1070 c~~l~~~~~~~~~~~~~ki~-~i~~~~~~~~~~~ 1102 (1112)
|.... ....+..++ .+..+.+.+|.+.
T Consensus 531 N~l~~------~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 531 NRIET------SKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp SCCCC------EESCGGGSCTTCCEEECCSCCCC
T ss_pred CcCcc------cCHhHhhhcccCcEEEccCCCcc
Confidence 97531 112244554 4778888887754
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=3.3e-30 Score=324.64 Aligned_cols=494 Identities=17% Similarity=0.136 Sum_probs=272.2
Q ss_pred cCCceeEEEEEeCCCCCccchhhhccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccc-cccc
Q 047598 533 RFERVRHSSYVRGGYDGRSKFEVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGEL-LVSF 611 (1112)
Q Consensus 533 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~ 611 (1112)
.+..++++.+..+.... .....+..+++|+.|.+.++. ....+.+..|.++++|++|+|++|.+..+ |..|
T Consensus 22 lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~-------~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQY-------TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTC-------CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCC-------CccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 34456666665543321 112345566666666665442 12333344566666666666666666554 4566
Q ss_pred cCCCcCcEEEcccccccc-cccc--ccCCCCCcEEeecCCCCCccc-C-ccccCCccccEEeecCCCccccCCCCCCCC-
Q 047598 612 EDLKLLRYLNLADTMIRT-LPES--TNSLLNLEILILRNCSRLKKL-P-SKMRNLINLHHLDIKGANLLREMPLGMKEL- 685 (1112)
Q Consensus 612 ~~l~~Lr~L~Ls~n~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l-p-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l- 685 (1112)
+++++|++|+|++|.+.. +|.. ++++++|++|+|++| .+..+ | ..++++++|++|++++|.+....|..++.+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 666666666666666653 3433 566666666666666 33332 2 346666666666666666444444445554
Q ss_pred -CCCCccCeeeeccCC-cccCcccccc------ccccCCeeEEecccCCCChhhhhhcccc---CccccCceEEEeCCCC
Q 047598 686 -KNLRTLSNFIVGKGE-AISGLEDLKN------LKFLGGELCISGLENVNDSQKVREATLC---EKENLKTLSLEWGSQF 754 (1112)
Q Consensus 686 -~~L~~L~~~~~~~~~-~~~~l~~l~~------L~~L~~~l~i~~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~ 754 (1112)
++|+.|++..+.... .+..+..+.+ |+.|. +.+ +......+..+. ....+..|.+..+...
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~----Ls~----n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD----VSG----NGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEB----CSS----CCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEe----cCC----CcCchhHHHHHHhhcCcccccceeccccccc
Confidence 566666655554322 1122222221 22221 110 111111111111 1123444444311110
Q ss_pred CCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCC-CccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcceEEe
Q 047598 755 DNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFP-SWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLRELTI 832 (1112)
Q Consensus 755 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L 832 (1112)
...............+..+ .+++|+.|+++++....++ ..+.. +++|+.|+|++|.+....+ .++.+++|+.|+|
T Consensus 245 ~~~~~~~l~~~~~~~f~~l-~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGL-ARSSVRHLDLSHGFVFSLNSRVFET--LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTT-TTSCCCEEECTTCCCCEECSCCSSS--CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred ccccccccCCCChhhhhcc-ccCCccEEECCCCcccccChhhhhc--CCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 0000000000001111111 1357888888877665553 33433 7788888888887766555 6777888888888
Q ss_pred cCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCc
Q 047598 833 QGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSL 912 (1112)
Q Consensus 833 ~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L 912 (1112)
++|......+..+.+ +++|+.|++++. ......+..+..+++|+.|++++ |.+++ ++. +++|
T Consensus 322 s~N~l~~~~~~~~~~------l~~L~~L~L~~N---------~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~-i~~-~~~L 383 (844)
T 3j0a_A 322 SYNLLGELYSSNFYG------LPKVAYIDLQKN---------HIAIIQDQTFKFLEKLQTLDLRD-NALTT-IHF-IPSI 383 (844)
T ss_dssp ESCCCSCCCSCSCSS------CTTCCEEECCSC---------CCCCCCSSCSCSCCCCCEEEEET-CCSCC-CSS-CCSC
T ss_pred CCCCCCccCHHHhcC------CCCCCEEECCCC---------CCCccChhhhcCCCCCCEEECCC-CCCCc-ccC-CCCc
Confidence 876543333333333 778888888762 22223334456677777777777 56662 332 4444
Q ss_pred ceeEEeE---------------EEEeccCCcccCc--ccCCCCCCcCEEEEecCCCCcccCCC--CCCCCCCeEEEcCCc
Q 047598 913 ETLVVAT---------------FVIANCEKLEALP--NDMHRLNFLEHLRIGQCPSILSFPEE--GFPTNLASLVIGGDV 973 (1112)
Q Consensus 913 ~~L~~~~---------------L~~~~~~~l~~lp--~~l~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~ 973 (1112)
+.|.+.. ++++++ .+..++ ..+..+++|+.|++++|......+.. ..+++|+.|++++|.
T Consensus 384 ~~L~l~~N~l~~l~~~~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 384 PDIFLSGNKLVTLPKINLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp SEEEEESCCCCCCCCCCTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred chhccCCCCcccccccccccceeecccC-ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCc
Confidence 4443211 111111 111111 12447899999999999655432221 347899999999984
Q ss_pred ccc---cccccccCCCCCCcCEEEEcccCCccccccCcccccccCCCCccEEEecCCCCCCcCC---CCCCCCeEEeecC
Q 047598 974 KMY---KGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKKLKKLS---LMTSLEYLWIKNC 1047 (1112)
Q Consensus 974 ~~~---~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L~~l~---~l~~L~~L~ls~c 1047 (1112)
-.. .+..+..+.++++|+.|+|++|. +..++...|.+ .++|+.|+++++ .++.++ ..++|+.|++++|
T Consensus 463 l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~--l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N 536 (844)
T 3j0a_A 463 LQLAWETELCWDVFEGLSHLQVLYLNHNY---LNSLPPGVFSH--LTALRGLSLNSN-RLTVLSHNDLPANLEILDISRN 536 (844)
T ss_dssp CSSSCCSCCCSSCSSCBCCEECCCCCHHH---HTTCCTTSSSS--CCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEE
T ss_pred cccccccccchhhhcCcccccEEECCCCc---ccccChhHccc--hhhhheeECCCC-CCCccChhhhhccccEEECCCC
Confidence 221 12334568889999999999986 77777665533 478999999985 566554 2379999999999
Q ss_pred CCCCcCCCCCCCCCccEEEEccCcch
Q 047598 1048 PNLASFPELGLPSSLTQLYIDHCPLV 1073 (1112)
Q Consensus 1048 ~~l~~lp~~~~~~~L~~L~l~~c~~l 1073 (1112)
......|. .+++|+.|++++||..
T Consensus 537 ~l~~~~~~--~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 537 QLLAPNPD--VFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCCCCCSC--CCSSCCEEEEEEECCC
T ss_pred cCCCCChh--HhCCcCEEEecCCCcc
Confidence 77766665 3568999999998864
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.7e-31 Score=321.68 Aligned_cols=205 Identities=14% Similarity=0.085 Sum_probs=87.7
Q ss_pred CCCceEEEeccCCCCCCCccCCCCCCc-eeEEEEcCcCCCCCCC-CCCCC--CCcceEEecCCCCceecCccccCC-CCc
Q 047598 777 KCIKNLTIKQYNGARFPSWLGDPLFSK-MEVLKLENCWNCTSLP-SLGLL--SSLRELTIQGLTKLKSIGSEVYGK-GFS 851 (1112)
Q Consensus 777 ~~L~~L~l~~~~~~~~p~~~~~~~l~~-L~~L~L~~~~~~~~l~-~l~~l--~~L~~L~L~~~~~l~~i~~~~~~~-~~~ 851 (1112)
++|+.|++++|....+|.++.. +++ |+.|++++|.+. .+| .++.+ ++|+.|++++|.....+|..+... ...
T Consensus 353 ~~L~~L~L~~N~l~~lp~~l~~--l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 353 IKLASLNLAYNQITEIPANFCG--FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEESEEECCSSEEEECCTTSEE--ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCEEECCCCccccccHhhhh--hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 3344444444444444444433 444 555555555544 333 23322 245555555544333333222200 000
Q ss_pred ccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCC-c-------ceeEEeEEEEe
Q 047598 852 KPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPS-L-------ETLVVATFVIA 923 (1112)
Q Consensus 852 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~-L-------~~L~~~~L~~~ 923 (1112)
..+++|+.|+++++ .........+..+++|++|++++ |+++ .+|..... + +.|+. |+++
T Consensus 430 ~~~~~L~~L~Ls~N---------~l~~lp~~~~~~l~~L~~L~Ls~-N~l~-~i~~~~~~~~~~~~~~l~~L~~--L~Ls 496 (636)
T 4eco_A 430 FKGINVSSINLSNN---------QISKFPKELFSTGSPLSSINLMG-NMLT-EIPKNSLKDENENFKNTYLLTS--IDLR 496 (636)
T ss_dssp CCCCCEEEEECCSS---------CCCSCCTHHHHTTCCCSEEECCS-SCCS-BCCSSSSEETTEECTTGGGCCE--EECC
T ss_pred ccCCCCCEEECcCC---------ccCcCCHHHHccCCCCCEEECCC-CCCC-CcCHHHhccccccccccCCccE--EECc
Confidence 01345555555542 11111111223466677777766 4565 44443211 1 12221 1122
Q ss_pred ccCCcccCcccCC--CCCCcCEEEEecCCCCcccCCC-CCCCCCCeEEEcCCc----ccccccccccCCCCCCcCEEEEc
Q 047598 924 NCEKLEALPNDMH--RLNFLEHLRIGQCPSILSFPEE-GFPTNLASLVIGGDV----KMYKGLIQWGLHRLTALRRLEID 996 (1112)
Q Consensus 924 ~~~~l~~lp~~l~--~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~----~~~~~~~~~~~~~l~~L~~L~l~ 996 (1112)
++ .+..+|..+. .+++|+.|+|++|.... +|.. +.+++|+.|++++|. +...+..|..+..+++|++|+|+
T Consensus 497 ~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 497 FN-KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp SS-CCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CC-cCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 22 1224444444 55566666666654333 4433 335555555554332 12233445555556666666666
Q ss_pred ccC
Q 047598 997 GCH 999 (1112)
Q Consensus 997 ~n~ 999 (1112)
+|.
T Consensus 575 ~N~ 577 (636)
T 4eco_A 575 SND 577 (636)
T ss_dssp SSC
T ss_pred CCc
Confidence 654
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.2e-30 Score=320.96 Aligned_cols=333 Identities=14% Similarity=0.105 Sum_probs=156.8
Q ss_pred cccccccccccCCCcCcEEEcccccccc------------------cccccc--CCCCCcEEeecCCCCCcccCccccCC
Q 047598 602 YYIGELLVSFEDLKLLRYLNLADTMIRT------------------LPESTN--SLLNLEILILRNCSRLKKLPSKMRNL 661 (1112)
Q Consensus 602 ~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~L 661 (1112)
|.+..+|..|+++++|++|+|++|.+.. +|+.++ ++++|++|+|++|.....+|..+++|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 3444466666666666666666666665 666655 66666666666665556666666666
Q ss_pred ccccEEeecCCC-ccc-cCCCCCCCCC-------CCCccCeeeeccCCccc--CccccccccccCCeeEEecccCCCChh
Q 047598 662 INLHHLDIKGAN-LLR-EMPLGMKELK-------NLRTLSNFIVGKGEAIS--GLEDLKNLKFLGGELCISGLENVNDSQ 730 (1112)
Q Consensus 662 ~~L~~L~L~~~~-~l~-~lp~~i~~l~-------~L~~L~~~~~~~~~~~~--~l~~l~~L~~L~~~l~i~~l~~~~~~~ 730 (1112)
++|++|+|++|. +.. .+|..+++++ +|+.|++.++.....|. .+.
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~------------------------ 570 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ------------------------ 570 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT------------------------
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhh------------------------
Confidence 666666666665 333 4555444333 66666655554443332 233
Q ss_pred hhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCc-eeEEEE
Q 047598 731 KVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSK-MEVLKL 809 (1112)
Q Consensus 731 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~-L~~L~L 809 (1112)
++++|+.|+++.|.. . .+..+..+++|+.|++++|....+|.++.. +++ |+.|+|
T Consensus 571 --------~L~~L~~L~Ls~N~l------------~--~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~--l~~~L~~L~L 626 (876)
T 4ecn_A 571 --------KMVKLGLLDCVHNKV------------R--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCA--FTDQVEGLGF 626 (876)
T ss_dssp --------TCTTCCEEECTTSCC------------C--BCCCCCTTSEESEEECCSSCCSCCCTTSCE--ECTTCCEEEC
T ss_pred --------cCCCCCEEECCCCCc------------c--cchhhcCCCcceEEECcCCccccchHHHhh--ccccCCEEEC
Confidence 333444444443332 1 111333344455555555544455554443 445 555555
Q ss_pred cCcCCCCCCC-CCCCCC--CcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccC
Q 047598 810 ENCWNCTSLP-SLGLLS--SLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEI 886 (1112)
Q Consensus 810 ~~~~~~~~l~-~l~~l~--~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 886 (1112)
++|.+. .+| .++.++ +|+.|+|++|.....++.-. ........++|+.|+++++. ........+..
T Consensus 627 s~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~-~~l~~~~~~~L~~L~Ls~N~---------L~~lp~~~~~~ 695 (876)
T 4ecn_A 627 SHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS-CSMDDYKGINASTVTLSYNE---------IQKFPTELFAT 695 (876)
T ss_dssp CSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS-SCTTTCCCCCEEEEECCSSC---------CCSCCHHHHHT
T ss_pred cCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch-hhhccccCCCcCEEEccCCc---------CCccCHHHHcc
Confidence 555544 333 333332 25555555554332222110 00000013355566655521 11111111234
Q ss_pred CCccceEeEecCCCCCCCCCCCCCC--------cceeEEeEEEEeccCCcccCcccCC--CCCCcCEEEEecCCCCcccC
Q 047598 887 FPRLHKLSIMECPKLSGKLPELLPS--------LETLVVATFVIANCEKLEALPNDMH--RLNFLEHLRIGQCPSILSFP 956 (1112)
Q Consensus 887 ~p~L~~L~l~~c~~L~~~~p~~~~~--------L~~L~~~~L~~~~~~~l~~lp~~l~--~l~~L~~L~L~~~~~l~~~~ 956 (1112)
+++|+.|++++ |+++ .+|..... +++|+. |.+++| .+..+|..+. .+++|+.|+|++|.... +|
T Consensus 696 l~~L~~L~Ls~-N~L~-~ip~~~~~~~~~~l~nl~~L~~--L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp 769 (876)
T 4ecn_A 696 GSPISTIILSN-NLMT-SIPENSLKPKDGNYKNTYLLTT--IDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSS-FP 769 (876)
T ss_dssp TCCCSEEECCS-CCCS-CCCTTSSSCTTSCCTTGGGCCE--EECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred CCCCCEEECCC-CcCC-ccChHHhccccccccccCCccE--EECCCC-CCccchHHhhhccCCCcCEEEeCCCCCCc-cc
Confidence 66677777766 4665 44443211 112221 112222 2223444443 55555555555553332 33
Q ss_pred CC-CCCCCCCeEEEcCCc----ccccccccccCCCCCCcCEEEEcccC
Q 047598 957 EE-GFPTNLASLVIGGDV----KMYKGLIQWGLHRLTALRRLEIDGCH 999 (1112)
Q Consensus 957 ~~-~~~~~L~~L~l~~~~----~~~~~~~~~~~~~l~~L~~L~l~~n~ 999 (1112)
.. +.+++|+.|+|++|. +...+..|..+.++++|+.|+|++|.
T Consensus 770 ~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 32 334555555554432 12233444455555555555555554
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.1e-30 Score=312.63 Aligned_cols=144 Identities=20% Similarity=0.222 Sum_probs=76.4
Q ss_pred CceeEEEEEeCCCCCccchhhhccCCCcceeccccccCCcccccccccccccccccCCcccEEEeccccccccc-ccccC
Q 047598 535 ERVRHSSYVRGGYDGRSKFEVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELL-VSFED 613 (1112)
Q Consensus 535 ~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~ 613 (1112)
..++++.+..+..... ....+..+++|+.|.+.++. + ..+++..|.++++|++|+|++|.+..+| ..|.+
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-------i-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCE-------I-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCC-------C-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCc-------C-CccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 3455555544432211 12244555666666655442 1 1233444556666666666666665554 45666
Q ss_pred CCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCc--ccCccccCCccccEEeecCCCccccCCCCCCCCCCC
Q 047598 614 LKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLK--KLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNL 688 (1112)
Q Consensus 614 l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L 688 (1112)
+++|++|++++|.+..+|. .++++++|++|++++| .+. .+|..++++++|++|++++|.+....|..++.+++|
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 6666666666666665554 4566666666666665 333 245566666666666666665333333345555555
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=5.2e-30 Score=308.84 Aligned_cols=105 Identities=26% Similarity=0.206 Sum_probs=47.9
Q ss_pred CcccEEEecccccccc-cccccCCCcCcEEEcccccccccc-ccccCCCCCcEEeecCCCCCcccCc-cccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGEL-LVSFEDLKLLRYLNLADTMIRTLP-ESTNSLLNLEILILRNCSRLKKLPS-KMRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 668 (1112)
+.|++|+|++|.++.+ |..|.++++|++|+|++|.+..+| ..|+++++|++|+|++| .+..+|. .++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 3445555555544443 234445555555555555544433 33445555555555554 3333332 244555555555
Q ss_pred ecCCCccc-cCCCCCCCCCCCCccCeeeec
Q 047598 669 IKGANLLR-EMPLGMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 669 L~~~~~l~-~lp~~i~~l~~L~~L~~~~~~ 697 (1112)
+++|.+.. ..|..++++++|++|++.++.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCc
Confidence 55544221 223344455555555544443
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=4.1e-29 Score=314.65 Aligned_cols=477 Identities=16% Similarity=0.152 Sum_probs=293.3
Q ss_pred cCCCcceeccccccCCcccccccccccccccccCCcccEEEecccc-cccc-cccccCCCcCcEEEccccccccc-cccc
Q 047598 558 QTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYY-IGEL-LVSFEDLKLLRYLNLADTMIRTL-PEST 634 (1112)
Q Consensus 558 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~l-p~~~~~l~~Lr~L~Ls~n~i~~l-p~~i 634 (1112)
-.++++.|.+..+. + ..+.+..|..+++|++|+|++|. +..+ |..|.++++|++|+|++|.+..+ |..|
T Consensus 22 lp~~l~~LdLs~N~-------i-~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-------I-RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESCC-------C-CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCcCEEECCCCc-------C-CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 45778888887654 2 23445668899999999999984 4566 67899999999999999998866 7789
Q ss_pred cCCCCCcEEeecCCCCCcccCcc--ccCCccccEEeecCCCccccCC-CCCCCCCCCCccCeeeeccCCc-ccCcccc--
Q 047598 635 NSLLNLEILILRNCSRLKKLPSK--MRNLINLHHLDIKGANLLREMP-LGMKELKNLRTLSNFIVGKGEA-ISGLEDL-- 708 (1112)
Q Consensus 635 ~~L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~-~~~l~~l-- 708 (1112)
+++++|++|+|++|.....+|.. ++++++|++|++++|.+....| ..++++++|++|++.++..... +..+..+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 99999999999998444445655 8899999999999998544333 4588999999999888775432 2344444
Q ss_pred ccccccCCeeEEecccCCCChhhhhhccccCcc------ccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceE
Q 047598 709 KNLKFLGGELCISGLENVNDSQKVREATLCEKE------NLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNL 782 (1112)
Q Consensus 709 ~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L 782 (1112)
.+|+.+. +.. +......+..+..+. .|+.|+++++....... ..+........+..|
T Consensus 174 ~~L~~L~----L~~----n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---------~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 174 KTLSFFS----LAA----NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT---------GNFSNAISKSQAFSL 236 (844)
T ss_dssp CSSCCCE----ECC----SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT---------SGGGGTSCSCCBSEE
T ss_pred CccceEE----CCC----CccccccccchhhcCCccccCceeEEecCCCcCchhHH---------HHHHhhcCcccccce
Confidence 4444442 211 112222222333333 38888888775422111 112222233456666
Q ss_pred EEeccCCC------CC----CCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcceEEecCCCCceecCccccCCCCc
Q 047598 783 TIKQYNGA------RF----PSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFS 851 (1112)
Q Consensus 783 ~l~~~~~~------~~----p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~ 851 (1112)
.+..+... .+ +..+.....++|+.|+|++|.+....+ .++.+++|+.|+|++|......+..+.+
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~---- 312 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG---- 312 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT----
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC----
Confidence 66522110 01 111221124789999999998876655 6889999999999997654444444433
Q ss_pred ccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccC
Q 047598 852 KPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEAL 931 (1112)
Q Consensus 852 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~l 931 (1112)
+++|+.|+++++ ......+..+..+++|+.|++++ |.+++..+..+..+++|+.++++-+.. ..+
T Consensus 313 --l~~L~~L~Ls~N---------~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l---~~i 377 (844)
T 3j0a_A 313 --LDNLQVLNLSYN---------LLGELYSSNFYGLPKVAYIDLQK-NHIAIIQDQTFKFLEKLQTLDLRDNAL---TTI 377 (844)
T ss_dssp --CSSCCEEEEESC---------CCSCCCSCSCSSCTTCCEEECCS-CCCCCCCSSCSCSCCCCCEEEEETCCS---CCC
T ss_pred --CCCCCEEECCCC---------CCCccCHHHhcCCCCCCEEECCC-CCCCccChhhhcCCCCCCEEECCCCCC---Ccc
Confidence 899999999983 33344456678899999999999 688866666777788886555443332 233
Q ss_pred cccCCCCCCcCEEEEecCCCCcccCCC-----------------------CCCCCCCeEEEcCCccccccc-ccccCCCC
Q 047598 932 PNDMHRLNFLEHLRIGQCPSILSFPEE-----------------------GFPTNLASLVIGGDVKMYKGL-IQWGLHRL 987 (1112)
Q Consensus 932 p~~l~~l~~L~~L~L~~~~~l~~~~~~-----------------------~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l 987 (1112)
+ .+++|+.|++++|+.. .+|.. ..+++|+.|++++|. ..+. ....+..+
T Consensus 378 ~----~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~ 450 (844)
T 3j0a_A 378 H----FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR--FSSCSGDQTPSEN 450 (844)
T ss_dssp S----SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC--CCCCCSSSSSCSC
T ss_pred c----CCCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc--ccccccccccccC
Confidence 2 3778888888888443 44432 123455555555552 1111 11123334
Q ss_pred CCcCEEEEcccCCccccccCc-----ccccccCCCCccEEEecCCCCCCc-----CCCCCCCCeEEeecCCCCCcCCCCC
Q 047598 988 TALRRLEIDGCHDDEVECFPN-----EEMGVMLPSSLTHLTIAGFKKLKK-----LSLMTSLEYLWIKNCPNLASFPELG 1057 (1112)
Q Consensus 988 ~~L~~L~l~~n~~~~l~~l~~-----~~~~~~~~~sL~~L~l~~~~~L~~-----l~~l~~L~~L~ls~c~~l~~lp~~~ 1057 (1112)
++|+.|++++|. +..++. ..|.+ .++|+.|+++++ .++. +..+++|+.|++++| .++.+|...
T Consensus 451 ~~L~~L~Ls~N~---l~~~~~~~~~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~ 523 (844)
T 3j0a_A 451 PSLEQLFLGENM---LQLAWETELCWDVFEG--LSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHND 523 (844)
T ss_dssp TTCCBCEEESCC---CSSSCCSCCCSSCSSC--BCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCC
T ss_pred CccccccCCCCc---cccccccccchhhhcC--cccccEEECCCC-cccccChhHccchhhhheeECCCC-CCCccChhh
Confidence 555555555544 221111 11111 245555555543 2222 336777888888887 445555433
Q ss_pred CCCCccEEEEccCcchHHhhccCCCCccccccccceeEeCCee
Q 047598 1058 LPSSLTQLYIDHCPLVKKECKMDKGKEWSKIAHIPCVEIDDKF 1100 (1112)
Q Consensus 1058 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ki~~i~~~~~~~~~ 1100 (1112)
..++|+.|++++|.... .....++.+..+.+.+|.
T Consensus 524 ~~~~L~~L~Ls~N~l~~--------~~~~~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 524 LPANLEILDISRNQLLA--------PNPDVFVSLSVLDITHNK 558 (844)
T ss_dssp CCSCCCEEEEEEECCCC--------CCSCCCSSCCEEEEEEEC
T ss_pred hhccccEEECCCCcCCC--------CChhHhCCcCEEEecCCC
Confidence 44778888888776532 111224466677776655
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=7.5e-30 Score=310.20 Aligned_cols=353 Identities=15% Similarity=0.170 Sum_probs=227.2
Q ss_pred cccccccccccCCCCCcEEeecCCCCCcc------------------cCcccc--CCccccEEeecCCCccccCCCCCCC
Q 047598 625 TMIRTLPESTNSLLNLEILILRNCSRLKK------------------LPSKMR--NLINLHHLDIKGANLLREMPLGMKE 684 (1112)
Q Consensus 625 n~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~ 684 (1112)
|.++.+|+.++++++|++|+|++| .+.. +|..++ ++++|++|++++|.+...+|..+++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 344456666666666666666666 3444 666666 6666666666666655666666666
Q ss_pred CCCCCccCeeeec-cCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhh
Q 047598 685 LKNLRTLSNFIVG-KGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVME 763 (1112)
Q Consensus 685 l~~L~~L~~~~~~-~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 763 (1112)
+++|++|++..+. ... ...+..+.++
T Consensus 272 l~~L~~L~Ls~n~~l~~------------------------------~~lp~~~~~L----------------------- 298 (636)
T 4eco_A 272 LPEMQLINVACNRGISG------------------------------EQLKDDWQAL----------------------- 298 (636)
T ss_dssp CSSCCEEECTTCTTSCH------------------------------HHHHHHHHHH-----------------------
T ss_pred CCCCCEEECcCCCCCcc------------------------------ccchHHHHhh-----------------------
Confidence 6666666555443 211 0011111111
Q ss_pred hHHHhhccCCCCCCCCceEEEeccCCCCCCC--ccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceec
Q 047598 764 EYAVGVLDKLQPHKCIKNLTIKQYNGARFPS--WLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSI 841 (1112)
Q Consensus 764 ~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i 841 (1112)
..+..+++|+.|++.+|....+|. ++.. +++|+.|++++|.+.+.+|.++.+++|+.|++++|. +..+
T Consensus 299 -------~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~--l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~l 368 (636)
T 4eco_A 299 -------ADAPVGEKIQIIYIGYNNLKTFPVETSLQK--MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEI 368 (636)
T ss_dssp -------HHSGGGGTCCEEECCSSCCSSCCCHHHHTT--CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEEC
T ss_pred -------hccccCCCCCEEECCCCcCCccCchhhhcc--CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccc
Confidence 111223445555566666666777 6665 788888888888877667777888888888888764 4466
Q ss_pred CccccCCCCcccCcc-cceeecCCCCcccccccccCCCCcCCcccC--CCccceEeEecCCCCCCCCCCCCC-------C
Q 047598 842 GSEVYGKGFSKPFQS-LEILSFENLPEWEYWDTNIKGNDHADRVEI--FPRLHKLSIMECPKLSGKLPELLP-------S 911 (1112)
Q Consensus 842 ~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~--~p~L~~L~l~~c~~L~~~~p~~~~-------~ 911 (1112)
|..+.. +++ |+.|++++.. .. ..+..+.. +++|+.|++++ |++++.+|..++ .
T Consensus 369 p~~l~~------l~~~L~~L~Ls~N~---------l~-~lp~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 369 PANFCG------FTEQVENLSFAHNK---------LK-YIPNIFDAKSVSVMSAIDFSY-NEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp CTTSEE------ECTTCCEEECCSSC---------CS-SCCSCCCTTCSSCEEEEECCS-SCTTTTTTCSSCTTCSSCCC
T ss_pred cHhhhh------hcccCcEEEccCCc---------Cc-ccchhhhhcccCccCEEECcC-CcCCCcchhhhccccccccc
Confidence 655444 777 8888888732 11 23333333 44888888888 678877777776 5
Q ss_pred cceeEEeEEEEeccCCcccCcccC-CCCCCcCEEEEecCCCCcccCCCCC--C-------CCCCeEEEcCCccccccccc
Q 047598 912 LETLVVATFVIANCEKLEALPNDM-HRLNFLEHLRIGQCPSILSFPEEGF--P-------TNLASLVIGGDVKMYKGLIQ 981 (1112)
Q Consensus 912 L~~L~~~~L~~~~~~~l~~lp~~l-~~l~~L~~L~L~~~~~l~~~~~~~~--~-------~~L~~L~l~~~~~~~~~~~~ 981 (1112)
+.+|+. |.++++. +..+|..+ ..+++|++|++++|... .+|...+ . ++|+.|++++|. .. .++
T Consensus 432 ~~~L~~--L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~-~lp 504 (636)
T 4eco_A 432 GINVSS--INLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK--LT-KLS 504 (636)
T ss_dssp CCCEEE--EECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC--CC-BCC
T ss_pred CCCCCE--EECcCCc-cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc--CC-ccC
Confidence 666654 3344432 33566543 45888999999988554 6665422 1 289999999883 33 345
Q ss_pred ccCC--CCCCcCEEEEcccCCccccccCcccccccCCCCccEEEecCCCC------CC----cCCCCCCCCeEEeecCCC
Q 047598 982 WGLH--RLTALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKK------LK----KLSLMTSLEYLWIKNCPN 1049 (1112)
Q Consensus 982 ~~~~--~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~------L~----~l~~l~~L~~L~ls~c~~ 1049 (1112)
..+. .+++|+.|+|++|. +..+|.... ..++|+.|+++++.. .. .+..+++|++|++++|+.
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~---l~~ip~~~~---~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNS---FSKFPTQPL---NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSC---CSSCCCGGG---GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhhhhccCCCcCEEECCCCC---CCCcChhhh---cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 5555 88999999999987 555665543 247889998865331 22 234789999999999966
Q ss_pred CCcCCCCCCCCCccEEEEccCcch
Q 047598 1050 LASFPELGLPSSLTQLYIDHCPLV 1073 (1112)
Q Consensus 1050 l~~lp~~~~~~~L~~L~l~~c~~l 1073 (1112)
+.+|.. ..++|+.|++++|+..
T Consensus 579 -~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 579 -RKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp -CBCCSC-CCTTCCEEECCSCTTC
T ss_pred -CccCHh-HhCcCCEEECcCCCCc
Confidence 888863 3389999999999764
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=6e-29 Score=305.88 Aligned_cols=263 Identities=16% Similarity=0.160 Sum_probs=165.6
Q ss_pred CCCCCceEEEeccCCCCCCC--ccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceecCccccCCCCcc
Q 047598 775 PHKCIKNLTIKQYNGARFPS--WLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSK 852 (1112)
Q Consensus 775 ~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~ 852 (1112)
.+++|+.|++++|....+|. ++.. +++|+.|+|++|.+. .+|.++.+++|+.|+|++|... .+|..+..
T Consensus 546 ~l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~----- 616 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCA----- 616 (876)
T ss_dssp TTTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCE-----
T ss_pred ccCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhh-----
Confidence 34556666666666666776 5654 777777777777766 6667777777777777776533 55544433
Q ss_pred cCcc-cceeecCCCCcccccccccCCCCcCCcccCC--CccceEeEecCCCCCCCCCCC---CCC--cceeEEeEEEEec
Q 047598 853 PFQS-LEILSFENLPEWEYWDTNIKGNDHADRVEIF--PRLHKLSIMECPKLSGKLPEL---LPS--LETLVVATFVIAN 924 (1112)
Q Consensus 853 ~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~--p~L~~L~l~~c~~L~~~~p~~---~~~--L~~L~~~~L~~~~ 924 (1112)
+++ |+.|+++++. + . ..+..+..+ ++|+.|++++ |++++.+|.. +.. +.+|+ .|.+++
T Consensus 617 -l~~~L~~L~Ls~N~-L--------~-~lp~~~~~~~~~~L~~L~Ls~-N~l~g~ip~l~~~l~~~~~~~L~--~L~Ls~ 682 (876)
T 4ecn_A 617 -FTDQVEGLGFSHNK-L--------K-YIPNIFNAKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINAS--TVTLSY 682 (876)
T ss_dssp -ECTTCCEEECCSSC-C--------C-SCCSCCCTTCSSCEEEEECCS-SCTTTTSSSCSSCTTTCCCCCEE--EEECCS
T ss_pred -ccccCCEEECcCCC-C--------C-cCchhhhccccCCCCEEECcC-CcCCCccccchhhhccccCCCcC--EEEccC
Confidence 666 7777777632 1 1 222333333 3478888887 5676544432 221 22343 344444
Q ss_pred cCCcccCcccCC-CCCCcCEEEEecCCCCcccCCCCC---------CCCCCeEEEcCCcccccccccccCC--CCCCcCE
Q 047598 925 CEKLEALPNDMH-RLNFLEHLRIGQCPSILSFPEEGF---------PTNLASLVIGGDVKMYKGLIQWGLH--RLTALRR 992 (1112)
Q Consensus 925 ~~~l~~lp~~l~-~l~~L~~L~L~~~~~l~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~--~l~~L~~ 992 (1112)
|. +..+|..+. .+++|+.|+|++|.. ..+|...+ +++|+.|+|++|. .. .++..+. .+++|+.
T Consensus 683 N~-L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~--L~-~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 683 NE-IQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNK--LT-SLSDDFRATTLPYLSN 757 (876)
T ss_dssp SC-CCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSC--CC-CCCGGGSTTTCTTCCE
T ss_pred Cc-CCccCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECCCCC--Cc-cchHHhhhccCCCcCE
Confidence 33 335665543 678888888888743 36665421 1278888888883 32 3455554 7888888
Q ss_pred EEEcccCCccccccCcccccccCCCCccEEEecCCCC------CC----cCCCCCCCCeEEeecCCCCCcCCCCCCCCCc
Q 047598 993 LEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKK------LK----KLSLMTSLEYLWIKNCPNLASFPELGLPSSL 1062 (1112)
Q Consensus 993 L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~------L~----~l~~l~~L~~L~ls~c~~l~~lp~~~~~~~L 1062 (1112)
|+|++|. +..+|.... ..++|+.|+++++.. .. .+..+++|+.|+|++|+. +.+|.. ..++|
T Consensus 758 L~Ls~N~---L~~lp~~l~---~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L 829 (876)
T 4ecn_A 758 MDVSYNC---FSSFPTQPL---NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQL 829 (876)
T ss_dssp EECCSSC---CSSCCCGGG---GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSS
T ss_pred EEeCCCC---CCccchhhh---cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCC
Confidence 8888876 555665442 246788888876331 12 234689999999999966 888863 34799
Q ss_pred cEEEEccCcch
Q 047598 1063 TQLYIDHCPLV 1073 (1112)
Q Consensus 1063 ~~L~l~~c~~l 1073 (1112)
+.|+|++|+..
T Consensus 830 ~~LdLs~N~l~ 840 (876)
T 4ecn_A 830 YILDIADNPNI 840 (876)
T ss_dssp CEEECCSCTTC
T ss_pred CEEECCCCCCC
Confidence 99999999864
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.6e-29 Score=304.67 Aligned_cols=146 Identities=22% Similarity=0.262 Sum_probs=84.0
Q ss_pred CCcceeccccccCCcccccccccccccccccCCcccEEEeccccccccc-ccccCCCcCcEEEcccccccccccc-ccCC
Q 047598 560 ENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPES-TNSL 637 (1112)
Q Consensus 560 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L 637 (1112)
++++.|.+.++. + ..+++..|..+++|++|+|++|.+..++ ..|.++++|++|+|++|.+..+|.. |+++
T Consensus 26 ~~L~~L~Ls~n~-------l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSFNK-------I-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp TTCCEEECCSSC-------C-CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCccEEECcCCc-------c-CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 455666555442 1 1223344566666666666666665554 4566666666666666666665544 6666
Q ss_pred CCCcEEeecCCCCCc--ccCccccCCccccEEeecCCCccccCC-CCCCCCCCCCccCeeeeccCC-cccCccccccccc
Q 047598 638 LNLEILILRNCSRLK--KLPSKMRNLINLHHLDIKGANLLREMP-LGMKELKNLRTLSNFIVGKGE-AISGLEDLKNLKF 713 (1112)
Q Consensus 638 ~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~-~~~~l~~l~~L~~ 713 (1112)
++|++|++++| .+. ..|..++++++|++|++++|..+..+| ..++.+++|++|++.++.... .+..+..+++|+.
T Consensus 98 ~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 98 SSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 66666666666 343 234556666666666666665445554 346666666666666655433 2334444444443
Q ss_pred c
Q 047598 714 L 714 (1112)
Q Consensus 714 L 714 (1112)
+
T Consensus 177 L 177 (549)
T 2z81_A 177 L 177 (549)
T ss_dssp E
T ss_pred E
Confidence 3
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.8e-29 Score=297.91 Aligned_cols=438 Identities=15% Similarity=0.160 Sum_probs=289.4
Q ss_pred CCcceeccccccCCcccccccccccccccccCCcccEEEecccccccc-cccccCCCcCcEEEccccccccccccccCCC
Q 047598 560 ENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGEL-LVSFEDLKLLRYLNLADTMIRTLPESTNSLL 638 (1112)
Q Consensus 560 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~ 638 (1112)
++++.|.+.++. + ..+++..|..+++|++|+|++|.+..+ |..|.++++|++|+|++|.++.+|.. .++
T Consensus 21 ~~L~~L~Ls~n~-------i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNY-------I-SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTV 90 (520)
T ss_dssp TTCSEEECCSSC-------C-CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCC
T ss_pred ccccEEECCCCc-------c-cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccC
Confidence 678888877654 1 233445678888888888888888776 56788888888888888888888877 788
Q ss_pred CCcEEeecCCCCCcc--cCccccCCccccEEeecCCCccccCCCCCCCCCCC--CccCeeeecc---CCcccCccccccc
Q 047598 639 NLEILILRNCSRLKK--LPSKMRNLINLHHLDIKGANLLREMPLGMKELKNL--RTLSNFIVGK---GEAISGLEDLKNL 711 (1112)
Q Consensus 639 ~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~~~~~~~---~~~~~~l~~l~~L 711 (1112)
+|++|+|++| .+.. +|..++++++|++|++++|.+.. ..++.+++| +.|++..+.. ...+..+..+..
T Consensus 91 ~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~- 165 (520)
T 2z7x_B 91 NLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT- 165 (520)
T ss_dssp CCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-
T ss_pred CccEEeccCC-ccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccccc-
Confidence 8888888888 4443 57788888888888888887432 346667777 8888887765 222333333321
Q ss_pred cccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCC
Q 047598 712 KFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGAR 791 (1112)
Q Consensus 712 ~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 791 (1112)
+ .+.+ .+.............+.++++|+.|+++++........ ....+..+...++|+.|.+.++....
T Consensus 166 ~----~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~------~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 166 E----SLHI-VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY------FLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp E----EEEE-ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH------HHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred c----eEEE-EeccCcchhhhhhhhhhcccceeeccccccccccccce------eecchhhhccccchhhccccccccCH
Confidence 1 1111 11111112223344567788999999998752111110 12233456677889999988765321
Q ss_pred -----CCCccCCCCCCceeEEEEcCcCCCCCCC-CC-----CCCCCcceEEecCCCCceecCccccCCCCcccCccccee
Q 047598 792 -----FPSWLGDPLFSKMEVLKLENCWNCTSLP-SL-----GLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEIL 860 (1112)
Q Consensus 792 -----~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l-----~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L 860 (1112)
++.+.. .++|++|++++|.+.+.+| .+ +.+++|+.+++++|.. .+|....... ..-++|+.|
T Consensus 235 ~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~--~~~~~L~~L 307 (520)
T 2z7x_B 235 NSFIRILQLVW---HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI--FSNMNIKNF 307 (520)
T ss_dssp HHHHHHHHHHH---TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH--HHTCCCSEE
T ss_pred HHHHHHHHHhh---hCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc--cccCceeEE
Confidence 111211 4589999999998876666 45 8899999999998764 4442111100 001468899
Q ss_pred ecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCC
Q 047598 861 SFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNF 940 (1112)
Q Consensus 861 ~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~ 940 (1112)
+++++.- ... .....+++|++|++++ +++++.+|..+..+++|+.++++-+....+..+|..+..+++
T Consensus 308 ~l~~n~l--------~~~---~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~ 375 (520)
T 2z7x_B 308 TVSGTRM--------VHM---LCPSKISPFLHLDFSN-NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375 (520)
T ss_dssp EEESSCC--------CCC---CCCSSCCCCCEEECCS-SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred EcCCCcc--------ccc---cchhhCCcccEEEeEC-CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence 8887431 110 0115788999999999 688877787777777776544443444433356667788888
Q ss_pred cCEEEEecCCCCcccCCC--CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCcccccccCCCC
Q 047598 941 LEHLRIGQCPSILSFPEE--GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSS 1018 (1112)
Q Consensus 941 L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~s 1018 (1112)
|++|++++|.....+|.. ..+++|+.|++++|. ..+..+..+. ++|+.|++++|. +..+|...+
T Consensus 376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~l~--~~L~~L~Ls~N~---l~~ip~~~~------- 441 (520)
T 2z7x_B 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI--LTDTIFRCLP--PRIKVLDLHSNK---IKSIPKQVV------- 441 (520)
T ss_dssp CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC--CCGGGGGSCC--TTCCEEECCSSC---CCCCCGGGG-------
T ss_pred CCEEECCCCcCCcccccchhccCccCCEEECcCCC--CCcchhhhhc--ccCCEEECCCCc---ccccchhhh-------
Confidence 888888888665546643 456788888888873 3333333332 678888888875 444544321
Q ss_pred ccEEEecCCCCCCcCCCCCCCCeEEeecCCCCCcCCC--CCCCCCccEEEEccCcch
Q 047598 1019 LTHLTIAGFKKLKKLSLMTSLEYLWIKNCPNLASFPE--LGLPSSLTQLYIDHCPLV 1073 (1112)
Q Consensus 1019 L~~L~l~~~~~L~~l~~l~~L~~L~ls~c~~l~~lp~--~~~~~~L~~L~l~~c~~l 1073 (1112)
.+++|++|++++|+ ++.+|. +..+++|++|++++||..
T Consensus 442 ----------------~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 442 ----------------KLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp ----------------GCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----------------cCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCCCc
Confidence 37899999999995 557775 778899999999999864
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=284.11 Aligned_cols=434 Identities=14% Similarity=0.137 Sum_probs=271.0
Q ss_pred CcccEEEeccccccccc-ccccCCCcCcEEEccccccccc-cccccCCCCCcEEeecCCCCCcccCccccCCccccEEee
Q 047598 592 KRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTL-PESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDI 669 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 669 (1112)
++|++|+|++|.+..++ ..|.++++|++|+|++|.+..+ |..|+++++|++|+|++| .+..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 67888888888877765 5678888888888888888766 567788888888888887 66677775 7888888888
Q ss_pred cCCCccc-cCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCcccc--Cce
Q 047598 670 KGANLLR-EMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENL--KTL 746 (1112)
Q Consensus 670 ~~~~~l~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L--~~L 746 (1112)
++|.+.. .+|..++++++|++|++.++..... .+..+++| +.|
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----------------------------------~~~~l~~L~L~~L 143 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----------------------------------SVLPIAHLNISKV 143 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----------------------------------GGGGGTTSCEEEE
T ss_pred cCCccccccchhhhccCCcceEEEecCcccchh----------------------------------hccccccceeeEE
Confidence 8887433 3566777888888887776543211 12233344 888
Q ss_pred EEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCC-CCCCccCCCCCCceeEEEEcCcC-------CCCCC
Q 047598 747 SLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGA-RFPSWLGDPLFSKMEVLKLENCW-------NCTSL 818 (1112)
Q Consensus 747 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~-------~~~~l 818 (1112)
+++++....... ....+..+.. ....+.+.++... .++.... ..+++|+.|++++|. ..+.+
T Consensus 144 ~l~~n~l~~~~~-------~~~~l~~l~~--~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~ 213 (520)
T 2z7x_B 144 LLVLGETYGEKE-------DPEGLQDFNT--ESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSIL 213 (520)
T ss_dssp EEEECTTTTSSC-------CTTTTTTCCE--EEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHHH
T ss_pred Eeeccccccccc-------cccccccccc--ceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccceeecch
Confidence 888876411000 0011111111 1122333333322 1222211 137778888888775 33344
Q ss_pred CCCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcc-----cCCCccceE
Q 047598 819 PSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRV-----EIFPRLHKL 893 (1112)
Q Consensus 819 ~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-----~~~p~L~~L 893 (1112)
+.++.+++|+.|++++|............ ....++|+.|+++++. ..+..+..+ ..+++|+.+
T Consensus 214 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~---~~~~~~L~~L~l~~n~---------l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQ---LVWHTTVWYFSISNVK---------LQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp HGGGGCTTCCEEEEEEEEEEHHHHHHHHH---HHHTSSCSEEEEEEEE---------EESCCCCCCCCCCSCCCCEEEEE
T ss_pred hhhccccchhhccccccccCHHHHHHHHH---HhhhCcccEEEeeccc---------ccCccccchhhcccccCceeEec
Confidence 56777788888888765422211111100 0013477778777632 122233333 667888888
Q ss_pred eEecCCCCCCCCCC-CCCCc---ceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCC-CCCCCCCeEE
Q 047598 894 SIMECPKLSGKLPE-LLPSL---ETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEE-GFPTNLASLV 968 (1112)
Q Consensus 894 ~l~~c~~L~~~~p~-~~~~L---~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~ 968 (1112)
++++ +.+ .+|. .+..+ .+| ..+.++++.. ..++ ....+++|++|++++|.....+|.. +.+++|+.|+
T Consensus 282 ~l~~-n~~--~~p~~~~~~~~~~~~L--~~L~l~~n~l-~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 354 (520)
T 2z7x_B 282 QVVS-DVF--GFPQSYIYEIFSNMNI--KNFTVSGTRM-VHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354 (520)
T ss_dssp EEEE-CCC--CSCTHHHHHHHHTCCC--SEEEEESSCC-CCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred cccc-cce--ecchhhhhcccccCce--eEEEcCCCcc-cccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence 8888 455 3442 22111 112 2233444432 2222 1268899999999999776656554 6789999999
Q ss_pred EcCCcccccccccccCCCCCCcCEEEEcccCCccccc-cCcccccccCCCCccEEEecCCCCCCcCC-CC-CCCCeEEee
Q 047598 969 IGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVEC-FPNEEMGVMLPSSLTHLTIAGFKKLKKLS-LM-TSLEYLWIK 1045 (1112)
Q Consensus 969 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~-l~~~~~~~~~~~sL~~L~l~~~~~L~~l~-~l-~~L~~L~ls 1045 (1112)
+++|........+..+..+++|+.|++++|. +.. +|...+. .+++|+.|+++++.--..++ .+ ++|+.|+++
T Consensus 355 L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~---l~~~l~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls 429 (520)
T 2z7x_B 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNS---VSYDEKKGDCS--WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429 (520)
T ss_dssp CCSSCCCBHHHHHHHHTTCTTCCEEECCSSC---CBCCGGGCSCC--CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECC
T ss_pred ccCCccCccccchHHHhhCCCCCEEECCCCc---CCcccccchhc--cCccCCEEECcCCCCCcchhhhhcccCCEEECC
Confidence 9999422112445668899999999999987 555 6655443 35789999999875333222 23 799999999
Q ss_pred cCCCCCcCCC-CCCCCCccEEEEccCcchHHhhccCCCCccccccccceeEeCCeecc
Q 047598 1046 NCPNLASFPE-LGLPSSLTQLYIDHCPLVKKECKMDKGKEWSKIAHIPCVEIDDKFIY 1102 (1112)
Q Consensus 1046 ~c~~l~~lp~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ki~~i~~~~~~~~~~~ 1102 (1112)
+| .++.+|. +..+++|++|++++|..-. .....+..++++..+.+.+|.+.
T Consensus 430 ~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 430 SN-KIKSIPKQVVKLEALQELNVASNQLKS-----VPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp SS-CCCCCCGGGGGCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CC-cccccchhhhcCCCCCEEECCCCcCCc-----cCHHHhccCCcccEEECcCCCCc
Confidence 99 4558885 6689999999999996542 11123667788889999988765
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=7.7e-28 Score=291.62 Aligned_cols=466 Identities=19% Similarity=0.205 Sum_probs=305.2
Q ss_pred CCceeEEEEEeCCCCCccchhhhccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccc-ccc
Q 047598 534 FERVRHSSYVRGGYDGRSKFEVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLV-SFE 612 (1112)
Q Consensus 534 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~-~~~ 612 (1112)
...++++.+..+.... .....+..+++|+.|.+.++. ...+++..|..+++|++|++++|.+..++. .++
T Consensus 51 l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 121 (570)
T 2z63_A 51 FPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNP--------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121 (570)
T ss_dssp CSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCC--------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCT
T ss_pred CCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCc--------CCccCHhhhcCccccccccccccccccCCCcccc
Confidence 4567777776654322 123467889999999998764 133455678999999999999999998875 699
Q ss_pred CCCcCcEEEcccccccc--ccccccCCCCCcEEeecCCCCCccc-CccccCCccc----cEEeecCCCccccCCCCCCCC
Q 047598 613 DLKLLRYLNLADTMIRT--LPESTNSLLNLEILILRNCSRLKKL-PSKMRNLINL----HHLDIKGANLLREMPLGMKEL 685 (1112)
Q Consensus 613 ~l~~Lr~L~Ls~n~i~~--lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L----~~L~L~~~~~l~~lp~~i~~l 685 (1112)
++++|++|++++|.+.. +|..|+++++|++|++++| .+..+ |..++.+++| ++|++++|.+ ..++......
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l-~~~~~~~~~~ 199 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKE 199 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCCC-CEECTTTTTT
T ss_pred ccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCCc-eecCHHHhcc
Confidence 99999999999999985 7999999999999999998 55554 5678888888 8999999984 4444443333
Q ss_pred CCCCccCeeeeccCC--cccCccccccccccCCeeEEecccCCCChhhhhhccccCccc--cCceEEEeCCCCCCCchhh
Q 047598 686 KNLRTLSNFIVGKGE--AISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKEN--LKTLSLEWGSQFDNSQDEV 761 (1112)
Q Consensus 686 ~~L~~L~~~~~~~~~--~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~~ 761 (1112)
.+|+.|++..+.... .+..+..+..+... .+.+................+..+.+ ++.+.+..+...
T Consensus 200 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~--~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~------- 270 (570)
T 2z63_A 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH--RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY------- 270 (570)
T ss_dssp CEEEEEEEESCCSCTTHHHHHHHTTTTCEEE--EEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEE-------
T ss_pred CcceeEecccccccccchhhhhcCcccccee--eeccccccCchhhhhcchhhhccccccchhhhhhhcchhh-------
Confidence 478888877653221 12223334444332 22222222222222222222333332 444555444210
Q ss_pred hhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceec
Q 047598 762 MEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSI 841 (1112)
Q Consensus 762 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i 841 (1112)
.......+..+++|+.|++.++....+|.++.. + +|++|++++|.+. .+|. ..+++|+.|++++|......
T Consensus 271 ----~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~--~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 271 ----LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN--F-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp ----ESCSTTTTGGGTTCSEEEEESCEECSCCBCCSC--C-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBC
T ss_pred ----hhhchhhhcCcCcccEEEecCccchhhhhhhcc--C-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccc
Confidence 112234455678899999999988889988875 6 9999999998876 5554 57889999999988654443
Q ss_pred CccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEE
Q 047598 842 GSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFV 921 (1112)
Q Consensus 842 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~ 921 (1112)
+. ..+++|+.|+++++.- .... ..+..+..+++|++|++++ +.+++ +|..+..+++|+. +.
T Consensus 342 ~~--------~~~~~L~~L~l~~n~l-~~~~------~~~~~~~~~~~L~~L~l~~-n~l~~-~~~~~~~l~~L~~--L~ 402 (570)
T 2z63_A 342 SE--------VDLPSLEFLDLSRNGL-SFKG------CCSQSDFGTTSLKYLDLSF-NGVIT-MSSNFLGLEQLEH--LD 402 (570)
T ss_dssp CC--------CBCTTCCEEECCSSCC-BEEE------EEEHHHHTCSCCCEEECCS-CSEEE-EEEEEETCTTCCE--EE
T ss_pred cc--------ccCCCCCEEeCcCCcc-Cccc------cccccccccCccCEEECCC-Ccccc-ccccccccCCCCE--EE
Confidence 32 2288999999987421 1110 0123346789999999999 56763 4443555555543 33
Q ss_pred EeccCCcccCc-ccCCCCCCcCEEEEecCCCCcccCCC-CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccC
Q 047598 922 IANCEKLEALP-NDMHRLNFLEHLRIGQCPSILSFPEE-GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCH 999 (1112)
Q Consensus 922 ~~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 999 (1112)
++++......| ..+..+++|++|++++|......+.. ..+++|+.|++++|. ...+..+..+..+++|+.|++++|.
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCc
Confidence 44443322333 35778999999999999766555543 558899999999994 2224567788999999999999986
Q ss_pred CccccccCcccccccCCCCccEEEecCCCCCCc-----CCCCCCCCeEEeecCCCCCcCC
Q 047598 1000 DDEVECFPNEEMGVMLPSSLTHLTIAGFKKLKK-----LSLMTSLEYLWIKNCPNLASFP 1054 (1112)
Q Consensus 1000 ~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L~~-----l~~l~~L~~L~ls~c~~l~~lp 1054 (1112)
+..++...+. ..++|+.|+++++ .++. +..+++|+.|++++|+.....|
T Consensus 482 ---l~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 482 ---LEQLSPTAFN--SLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp ---CCEECTTTTT--TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ---cccCChhhhh--cccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 4544332222 2355666666654 2322 2356666677777665554443
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.1e-26 Score=279.50 Aligned_cols=404 Identities=17% Similarity=0.130 Sum_probs=217.8
Q ss_pred CcccEEEeccccccccc-ccccCCCcCcEEEccccccccc-cccccCCCCCcEEeecCCCCCcccCccccCCccccEEee
Q 047598 592 KRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTL-PESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDI 669 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 669 (1112)
++|++|+|++|.+..++ ..|.++++|++|+|++|.+..+ |..|+++++|++|+|++| .+..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEEC
Confidence 67778888888777765 5677788888888888877766 556777888888888877 56677765 6778888888
Q ss_pred cCCCccccC--CCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceE
Q 047598 670 KGANLLREM--PLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLS 747 (1112)
Q Consensus 670 ~~~~~l~~l--p~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 747 (1112)
++|. +..+ |..++++++|++|++.++..... .+ ..+.++ +|+.|+
T Consensus 129 s~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~-----------------------------~~l~~L-~L~~L~ 175 (562)
T 3a79_B 129 SFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DL-----------------------------LPVAHL-HLSCIL 175 (562)
T ss_dssp CSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTT--TT-----------------------------GGGTTS-CEEEEE
T ss_pred CCCC-ccccCchHhhcccCcccEEecCCCccccC--ch-----------------------------hhhhhc-eeeEEE
Confidence 8877 3443 35677777777777766543211 01 111222 448899
Q ss_pred EEeCCC--CCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCC-CCCccCCCCCCceeEEEEcCcC-----------
Q 047598 748 LEWGSQ--FDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGAR-FPSWLGDPLFSKMEVLKLENCW----------- 813 (1112)
Q Consensus 748 l~~~~~--~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~----------- 813 (1112)
++++.. ....+ ..+..+.. ..-.+.+.++.... ++.... ..+++|+.|++++|.
T Consensus 176 L~~n~l~~~~~~~---------~~l~~l~~--~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~l~~~~~ 243 (562)
T 3a79_B 176 LDLVSYHIKGGET---------ESLQIPNT--TVLHLVFHPNSLFSVQVNMSV-NALGHLQLSNIKLNDENCQRLMTFLS 243 (562)
T ss_dssp EEESSCCCCSSSC---------CEEEECCE--EEEEEEECSSSCCCCCCEEEE-SSEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred eecccccccccCc---------ccccccCc--ceEEEEecCccchhhhhhhcc-cccceEEEecccccccccchHHHHHH
Confidence 998764 11111 11111110 00022233332211 111111 124555555555542
Q ss_pred -----------------CCC----CCCCCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccc
Q 047598 814 -----------------NCT----SLPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWD 872 (1112)
Q Consensus 814 -----------------~~~----~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 872 (1112)
+.. .++.....++|++|++++|.....+|..++... .++|+.|.+.++..-
T Consensus 244 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~----~~~L~~L~~~~~~~~---- 315 (562)
T 3a79_B 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS----ETALKSLMIEHVKNQ---- 315 (562)
T ss_dssp HHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCC----SCSCCEEEEEEEEEC----
T ss_pred HHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcc----cccchheehhhcccc----
Confidence 110 000001123677777777654445554432210 133444443332110
Q ss_pred cccCCCCcC-Cccc---CCCccceEeEecCCCCCCCC-CCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEe
Q 047598 873 TNIKGNDHA-DRVE---IFPRLHKLSIMECPKLSGKL-PELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIG 947 (1112)
Q Consensus 873 ~~~~~~~~~-~~~~---~~p~L~~L~l~~c~~L~~~~-p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~ 947 (1112)
.. ..+ ..+. ..++|++|++++| .+.... +..+++|+.|. ++++.....+|..+..+++|++|+++
T Consensus 316 --~~--~~p~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~l~~L~~L~-----l~~n~l~~~~~~~~~~l~~L~~L~L~ 385 (562)
T 3a79_B 316 --VF--LFSKEALYSVFAEMNIKMLSISDT-PFIHMVCPPSPSSFTFLN-----FTQNVFTDSVFQGCSTLKRLQTLILQ 385 (562)
T ss_dssp --CC--SSCHHHHHHHHHTCCCSEEEEESS-CCCCCCCCSSCCCCCEEE-----CCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred --ee--ecChhhhhhhhccCcceEEEccCC-CcccccCccCCCCceEEE-----CCCCccccchhhhhcccCCCCEEECC
Confidence 00 000 0000 1144667777763 343111 12333333332 33433333456666667777777777
Q ss_pred cCCCCcccC---C-CCCCCCCCeEEEcCCcccccc-cccccCCCCCCcCEEEEcccCCccccccCcccccccCCCCccEE
Q 047598 948 QCPSILSFP---E-EGFPTNLASLVIGGDVKMYKG-LIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHL 1022 (1112)
Q Consensus 948 ~~~~l~~~~---~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L 1022 (1112)
+|.. ..++ . ...+++|+.|++++|. ..+ .....+..+++|+.|++++|... ..++. .+|++|+.|
T Consensus 386 ~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~-----~l~~~L~~L 455 (562)
T 3a79_B 386 RNGL-KNFFKVALMTKNMSSLETLDVSLNS--LNSHAYDRTCAWAESILVLNLSSNMLT--GSVFR-----CLPPKVKVL 455 (562)
T ss_dssp SSCC-CBTTHHHHTTTTCTTCCEEECTTSC--CBSCCSSCCCCCCTTCCEEECCSSCCC--GGGGS-----SCCTTCSEE
T ss_pred CCCc-CCcccchhhhcCCCCCCEEECCCCc--CCCccChhhhcCcccCCEEECCCCCCC--cchhh-----hhcCcCCEE
Confidence 7633 3222 1 2446677777777762 333 23334666677777777776521 11111 133567777
Q ss_pred EecCCCCCCcCC----CCCCCCeEEeecCCCCCcCCC--CCCCCCccEEEEccCcch
Q 047598 1023 TIAGFKKLKKLS----LMTSLEYLWIKNCPNLASFPE--LGLPSSLTQLYIDHCPLV 1073 (1112)
Q Consensus 1023 ~l~~~~~L~~l~----~l~~L~~L~ls~c~~l~~lp~--~~~~~~L~~L~l~~c~~l 1073 (1112)
+++++ .++.++ .+++|++|++++|. ++.+|. +..+++|+.|++++||..
T Consensus 456 ~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 456 DLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp ECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred ECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 77765 444443 68999999999995 457775 788999999999999853
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=2.6e-26 Score=282.51 Aligned_cols=473 Identities=19% Similarity=0.142 Sum_probs=229.7
Q ss_pred CcceeccccccCCcccccccccccccccccCCcccEEEecccccccccc-cccCCCcCcEEEccccccccccc-cccCCC
Q 047598 561 NLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLV-SFEDLKLLRYLNLADTMIRTLPE-STNSLL 638 (1112)
Q Consensus 561 ~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~-~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~ 638 (1112)
+++.|.+..+. + ..+++..|.++++|++|+|++|.++.+|+ +|.+|++|++|+|++|+++.+|. .|++|+
T Consensus 53 ~~~~LdLs~N~-------i-~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNP-------L-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TCCEEECTTSC-------C-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCCEEEeeCCC-------C-CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 45566555543 1 23444556666667777777666666653 46666667777777666666654 356666
Q ss_pred CCcEEeecCCCCCcccCc-cccCCccccEEeecCCCccc-cCCCCCCCCCCCCccCeeeeccCCc-ccCccccccccccC
Q 047598 639 NLEILILRNCSRLKKLPS-KMRNLINLHHLDIKGANLLR-EMPLGMKELKNLRTLSNFIVGKGEA-ISGLEDLKNLKFLG 715 (1112)
Q Consensus 639 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~~~~~~~~~~-~~~l~~l~~L~~L~ 715 (1112)
+|++|+|++| .+..+|. .|+++++|++|++++|.+.. .+|..++.+++|++|++.++..... +..+..+.++....
T Consensus 125 ~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 125 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 7777777666 4555544 36666667777776666322 2445566666666666665554332 12222222222111
Q ss_pred CeeEE--------------------ecccCCCChhhhhhccccCccccCceEEEeCCCCCC-----Cchhhhhh------
Q 047598 716 GELCI--------------------SGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDN-----SQDEVMEE------ 764 (1112)
Q Consensus 716 ~~l~i--------------------~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~------ 764 (1112)
..+.. ..+.............+..+..++...+........ ........
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 00000 000000001111122233333333333322110000 00000000
Q ss_pred ----------HHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecC
Q 047598 765 ----------YAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQG 834 (1112)
Q Consensus 765 ----------~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 834 (1112)
........+.....+..+.+.++....++.... ..+|+.|++.+|.+....+ ..++.|+.+++..
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~--~~l~~L~~l~l~~ 358 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTS 358 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGS---CCCCSEEEEESCEESSCCC--CBCTTCCEEEEES
T ss_pred hhhhhhhhcccccchhhhhhhhccccccccccccccccccccc---chhhhhhhcccccccCcCc--ccchhhhhccccc
Confidence 000111222334456666666655444433221 4566666666665432211 2345566666665
Q ss_pred CCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcce
Q 047598 835 LTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLET 914 (1112)
Q Consensus 835 ~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~ 914 (1112)
+...... .. ..+++|+.|++++..--. ....+.....+++|+.|++..+ ... .++..+..+..
T Consensus 359 n~~~~~~--~~------~~l~~L~~L~ls~n~l~~-------~~~~~~~~~~~~~L~~L~~~~~-~~~-~~~~~~~~l~~ 421 (635)
T 4g8a_A 359 NKGGNAF--SE------VDLPSLEFLDLSRNGLSF-------KGCCSQSDFGTISLKYLDLSFN-GVI-TMSSNFLGLEQ 421 (635)
T ss_dssp CCSCCBC--CC------CBCTTCCEEECCSSCCBE-------EEECCHHHHSCSCCCEEECCSC-SEE-EECSCCTTCTT
T ss_pred ccCCCCc--cc------ccccccccchhhcccccc-------ccccccchhhhhhhhhhhcccc-ccc-ccccccccccc
Confidence 4322111 01 115666666665421100 0001112234455666666552 333 23333444444
Q ss_pred eEEeEEEEeccCCcccCc-ccCCCCCCcCEEEEecCCCCcccCCC-CCCCCCCeEEEcCCcccccccccccCCCCCCcCE
Q 047598 915 LVVATFVIANCEKLEALP-NDMHRLNFLEHLRIGQCPSILSFPEE-GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRR 992 (1112)
Q Consensus 915 L~~~~L~~~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 992 (1112)
|+..+ +..+......+ ..+..+++|+.++++.|......+.. ..+++|+.|++++|.. .....+..+..+++|+.
T Consensus 422 L~~l~--l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~-~~~~~~~~~~~l~~L~~ 498 (635)
T 4g8a_A 422 LEHLD--FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTF 498 (635)
T ss_dssp CCEEE--CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE-GGGEECSCCTTCTTCCE
T ss_pred ccchh--hhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccc-ccccCchhhhhccccCE
Confidence 43222 22222221211 23455666666666666443333332 3456666666666632 22334455666666666
Q ss_pred EEEcccCCccccccCcccccccCCCCccEEEecCCCCCCcC-----CCCCCCCeEEeecCCCCCcCCC-CCCC-CCccEE
Q 047598 993 LEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKKLKKL-----SLMTSLEYLWIKNCPNLASFPE-LGLP-SSLTQL 1065 (1112)
Q Consensus 993 L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L~~l-----~~l~~L~~L~ls~c~~l~~lp~-~~~~-~~L~~L 1065 (1112)
|+|++|. +..++...|.+ .++|+.|+++++ +++.+ ..+++|++|++++|......|. +..+ ++|+.|
T Consensus 499 L~Ls~N~---L~~l~~~~f~~--l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 499 LDLSQCQ---LEQLSPTAFNS--LSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp EECTTSC---CCEECTTTTTT--CTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred EECCCCc---cCCcChHHHcC--CCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 6666665 55554444432 356666666653 33333 3689999999999976666664 5554 789999
Q ss_pred EEccCcch
Q 047598 1066 YIDHCPLV 1073 (1112)
Q Consensus 1066 ~l~~c~~l 1073 (1112)
++++||..
T Consensus 573 ~L~~Np~~ 580 (635)
T 4g8a_A 573 NLTQNDFA 580 (635)
T ss_dssp ECTTCCBC
T ss_pred EeeCCCCc
Confidence 99998853
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=9.5e-26 Score=264.50 Aligned_cols=100 Identities=20% Similarity=0.286 Sum_probs=54.3
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecC
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKG 671 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 671 (1112)
+.|+.|+++++.+..+|. +..+++|++|+|++|.+..+|. ++++++|++|++++| .+..+|. ++++++|++|++++
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCC
Confidence 455555555555555542 5555555555555555555554 555555555655555 4444444 55555555665555
Q ss_pred CCccccCCCCCCCCCCCCccCeeeec
Q 047598 672 ANLLREMPLGMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 672 ~~~l~~lp~~i~~l~~L~~L~~~~~~ 697 (1112)
|. +..+|. ++++++|++|++..+.
T Consensus 122 n~-l~~~~~-~~~l~~L~~L~l~~n~ 145 (466)
T 1o6v_A 122 NQ-ITDIDP-LKNLTNLNRLELSSNT 145 (466)
T ss_dssp SC-CCCCGG-GTTCTTCSEEEEEEEE
T ss_pred CC-CCCChH-HcCCCCCCEEECCCCc
Confidence 55 333433 5555555555555544
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.4e-25 Score=259.95 Aligned_cols=368 Identities=22% Similarity=0.202 Sum_probs=185.2
Q ss_pred CCcccEEEecccccccccccccCCCcCcEEEccccccc-cccccccCCCCC-------------cEEeecCCCCCcccCc
Q 047598 591 FKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIR-TLPESTNSLLNL-------------EILILRNCSRLKKLPS 656 (1112)
Q Consensus 591 ~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~-~lp~~i~~L~~L-------------~~L~L~~~~~l~~lp~ 656 (1112)
...|++|++++|.++.+|.+|+++++|++|++++|.+. .+|.+++++.+| ++|++++| .+..+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC
Confidence 47899999999999999999999999999999999887 789999988875 88888887 5777776
Q ss_pred cccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhcc
Q 047598 657 KMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREAT 736 (1112)
Q Consensus 657 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~ 736 (1112)
. .++|++|++++|. +..+|.. +++|+.|++.++.....+...
T Consensus 89 ~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~l~~l~~~~------------------------------- 130 (454)
T 1jl5_A 89 L---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNNLKALSDLP------------------------------- 130 (454)
T ss_dssp C---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSCCCSCC-------------------------------
T ss_pred C---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCccCcccCCC-------------------------------
Confidence 2 3678888888887 4557754 367777777665443321110
Q ss_pred ccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCC
Q 047598 737 LCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCT 816 (1112)
Q Consensus 737 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 816 (1112)
++|+.|++++|... .+..+..+++|+.|++++|....+|.+ +++|++|++++|.+..
T Consensus 131 ----~~L~~L~L~~n~l~--------------~lp~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~ 187 (454)
T 1jl5_A 131 ----PLLEYLGVSNNQLE--------------KLPELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEE 187 (454)
T ss_dssp ----TTCCEEECCSSCCS--------------SCCCCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSS
T ss_pred ----CCCCEEECcCCCCC--------------CCcccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCc
Confidence 24555555544321 112344455566666666655555543 2356666666665543
Q ss_pred CCCCCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEe
Q 047598 817 SLPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIM 896 (1112)
Q Consensus 817 ~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 896 (1112)
+|.++.+++|+.|++++|.. ..++.. .++|+.|+++++. .. ..+ .+..+++|++|+++
T Consensus 188 -l~~~~~l~~L~~L~l~~N~l-~~l~~~---------~~~L~~L~l~~n~---------l~-~lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 188 -LPELQNLPFLTAIYADNNSL-KKLPDL---------PLSLESIVAGNNI---------LE-ELP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp -CCCCTTCTTCCEEECCSSCC-SSCCCC---------CTTCCEEECCSSC---------CS-SCC-CCTTCTTCCEEECC
T ss_pred -CccccCCCCCCEEECCCCcC-CcCCCC---------cCcccEEECcCCc---------CC-ccc-ccCCCCCCCEEECC
Confidence 45666666666666666532 222210 3456666666521 11 112 24556666666666
Q ss_pred cCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCCCCCCCCCeEEEcCCcccc
Q 047598 897 ECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEEGFPTNLASLVIGGDVKMY 976 (1112)
Q Consensus 897 ~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~ 976 (1112)
+ |+++ .+|..+++|+.|. ++++ .+..+|.. +++|+.|++++|. +..++. .+++|+.|++++|. .
T Consensus 246 ~-N~l~-~l~~~~~~L~~L~-----l~~N-~l~~l~~~---~~~L~~L~ls~N~-l~~l~~--~~~~L~~L~l~~N~--l 309 (454)
T 1jl5_A 246 N-NLLK-TLPDLPPSLEALN-----VRDN-YLTDLPEL---PQSLTFLDVSENI-FSGLSE--LPPNLYYLNASSNE--I 309 (454)
T ss_dssp S-SCCS-SCCSCCTTCCEEE-----CCSS-CCSCCCCC---CTTCCEEECCSSC-CSEESC--CCTTCCEEECCSSC--C
T ss_pred C-CcCC-cccccccccCEEE-----CCCC-cccccCcc---cCcCCEEECcCCc-cCcccC--cCCcCCEEECcCCc--C
Confidence 6 4565 3555444554443 2222 23334432 3566667776664 333332 23566666666662 2
Q ss_pred cccccccCCCC-CCcCEEEEcccCCccccccCcccccccCCCCccEEEecCCCCCCcCC-CCCCCCeEEeecCCCCC--c
Q 047598 977 KGLIQWGLHRL-TALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKKLKKLS-LMTSLEYLWIKNCPNLA--S 1052 (1112)
Q Consensus 977 ~~~~~~~~~~l-~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L~~l~-~l~~L~~L~ls~c~~l~--~ 1052 (1112)
.+ +..+ ++|+.|++++|. +..+|. .+++|+.|+++++ .++.++ .+++|++|++++|+... .
T Consensus 310 ~~-----i~~~~~~L~~L~Ls~N~---l~~lp~------~~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N~l~~l~~ 374 (454)
T 1jl5_A 310 RS-----LCDLPPSLEELNVSNNK---LIELPA------LPPRLERLIASFN-HLAEVPELPQNLKQLHVEYNPLREFPD 374 (454)
T ss_dssp SE-----ECCCCTTCCEEECCSSC---CSCCCC------CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCCC
T ss_pred Cc-----ccCCcCcCCEEECCCCc---cccccc------cCCcCCEEECCCC-ccccccchhhhccEEECCCCCCCcCCC
Confidence 11 1122 366667776665 334443 1356666666654 344443 35667777777775554 4
Q ss_pred CCC-CCCC-------------CCccEEEEccCcch
Q 047598 1053 FPE-LGLP-------------SSLTQLYIDHCPLV 1073 (1112)
Q Consensus 1053 lp~-~~~~-------------~~L~~L~l~~c~~l 1073 (1112)
+|. ++.+ ++|+.|++++|+..
T Consensus 375 ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CCTTCCEEECCC-----------------------
T ss_pred ChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 443 3333 67888888877653
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=3.6e-25 Score=266.42 Aligned_cols=436 Identities=14% Similarity=0.145 Sum_probs=292.2
Q ss_pred CCcceeccccccCCcccccccccccccccccCCcccEEEecccccccc-cccccCCCcCcEEEccccccccccccccCCC
Q 047598 560 ENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGEL-LVSFEDLKLLRYLNLADTMIRTLPESTNSLL 638 (1112)
Q Consensus 560 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~ 638 (1112)
++++.|.+.++. + ..+++..|..+++|++|+|++|.++.+ |..|.++++|++|+|++|.+..+|.. .++
T Consensus 52 ~~L~~L~Ls~N~-------i-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNS-------I-SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMA 121 (562)
T ss_dssp TTCCEEECCSSC-------C-CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCT
T ss_pred CCcCEEECCCCC-------c-cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccc
Confidence 788899887764 1 234556789999999999999999887 57799999999999999999999987 899
Q ss_pred CCcEEeecCCCCCccc--CccccCCccccEEeecCCCccccCCCCCCCCCCC--CccCeeeecc--CC-cccCccccccc
Q 047598 639 NLEILILRNCSRLKKL--PSKMRNLINLHHLDIKGANLLREMPLGMKELKNL--RTLSNFIVGK--GE-AISGLEDLKNL 711 (1112)
Q Consensus 639 ~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~~~~~~~--~~-~~~~l~~l~~L 711 (1112)
+|++|++++| .+..+ |..++++++|++|++++|.+.. ..+..+++| +.|++..+.. .. .+..+..+..
T Consensus 122 ~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~- 196 (562)
T 3a79_B 122 SLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT- 196 (562)
T ss_dssp TCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-
T ss_pred cCCEEECCCC-CccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCc-
Confidence 9999999998 56665 4789999999999999998433 345666666 9999888765 22 2223333221
Q ss_pred cccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCC-
Q 047598 712 KFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGA- 790 (1112)
Q Consensus 712 ~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~- 790 (1112)
+.+ .+ .+....-........+.++++|+.|+++++... .. .....+..+...+.++.|.+.++...
T Consensus 197 ~~l----~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~---~~-----~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 197 TVL----HL-VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN---CQ-----RLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp EEE----EE-EECSSSCCCCCCEEEESSEEEEEEEEEECCSTT---HH-----HHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred ceE----EE-EecCccchhhhhhhcccccceEEEecccccccc---cc-----hHHHHHHHHhccCcceEEEecCCcCcH
Confidence 111 11 111111111223344667788999999876420 00 01222334445567777777665432
Q ss_pred ----CCCCccCCCCCCceeEEEEcCcCCCCCCC-CC-----CCCCCcceEEecCCCCceecCccccCCCCcccCccccee
Q 047598 791 ----RFPSWLGDPLFSKMEVLKLENCWNCTSLP-SL-----GLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEIL 860 (1112)
Q Consensus 791 ----~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l-----~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L 860 (1112)
.++.+.. .++|++|++++|.+.+.+| .+ +.++.|+.+++..+.. .+|...... .-..++|+.|
T Consensus 264 ~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~--~~~~~~L~~L 336 (562)
T 3a79_B 264 KCSVKLFQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS--VFAEMNIKML 336 (562)
T ss_dssp HHHHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH--HHHTCCCSEE
T ss_pred HHHHHHHHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh--hhccCcceEE
Confidence 2233332 4589999999998876666 33 5666666666665542 333211110 0002468888
Q ss_pred ecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCC
Q 047598 861 SFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNF 940 (1112)
Q Consensus 861 ~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~ 940 (1112)
+++++.- ... .....+++|++|++++ |++++.+|..+..+++|+.++++-+....+..+|..+..+++
T Consensus 337 ~l~~n~~--------~~~---~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 404 (562)
T 3a79_B 337 SISDTPF--------IHM---VCPPSPSSFTFLNFTQ-NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404 (562)
T ss_dssp EEESSCC--------CCC---CCCSSCCCCCEEECCS-SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT
T ss_pred EccCCCc--------ccc---cCccCCCCceEEECCC-CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC
Confidence 8887421 110 1115688999999999 688877888887777776555544444444455567888999
Q ss_pred cCEEEEecCCCCcccCCC--CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCcccccccCCCC
Q 047598 941 LEHLRIGQCPSILSFPEE--GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSS 1018 (1112)
Q Consensus 941 L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~s 1018 (1112)
|+.|++++|.....+|.. ..+++|+.|++++|. ..+..+..+. ++|+.|++++|. ++.+|...+ ..++
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~--~~L~~L~L~~N~---l~~ip~~~~---~l~~ 474 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM--LTGSVFRCLP--PKVKVLDLHNNR---IMSIPKDVT---HLQA 474 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC--CCGGGGSSCC--TTCSEEECCSSC---CCCCCTTTT---SSCC
T ss_pred CCEEECCCCcCCCccChhhhcCcccCCEEECCCCC--CCcchhhhhc--CcCCEEECCCCc---CcccChhhc---CCCC
Confidence 999999999766546654 457899999999983 3333333332 689999999986 677877654 3468
Q ss_pred ccEEEecCCCCCCcC-----CCCCCCCeEEeecCCCCCcC
Q 047598 1019 LTHLTIAGFKKLKKL-----SLMTSLEYLWIKNCPNLASF 1053 (1112)
Q Consensus 1019 L~~L~l~~~~~L~~l-----~~l~~L~~L~ls~c~~l~~l 1053 (1112)
|+.|+++++ .++.+ ..+++|+.|++++|+.....
T Consensus 475 L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 475 LQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 999999874 44444 46899999999999865543
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.6e-25 Score=259.78 Aligned_cols=366 Identities=17% Similarity=0.119 Sum_probs=213.4
Q ss_pred CcccEEEecccccccc-cccccCCCcCcEEEccccccc-cc-cccccCCCCCcEEeecCCCCCcccCccccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGEL-LVSFEDLKLLRYLNLADTMIR-TL-PESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~n~i~-~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 668 (1112)
++|++|+|++|.+..+ |..|.++++|++|+|++|.+. .+ |..|.++++|++|+|++|......|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6789999999988776 577889999999999998876 55 45688899999999999844444577888899999999
Q ss_pred ecCCCccccCCCC--CCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCce
Q 047598 669 IKGANLLREMPLG--MKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTL 746 (1112)
Q Consensus 669 L~~~~~l~~lp~~--i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 746 (1112)
+++|.+....|.. ++.+++|++|++.++........ ..+.++++|+.|
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------------------~~~~~l~~L~~L 159 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA------------------------------SFFLNMRRFHVL 159 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC------------------------------GGGGGCTTCCEE
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcc------------------------------cccCCCCcccEE
Confidence 9998854444444 78888888888776654332110 012334455555
Q ss_pred EEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC-------
Q 047598 747 SLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP------- 819 (1112)
Q Consensus 747 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~------- 819 (1112)
+++++..... .|..+......+|+.|++++|.+....+
T Consensus 160 ~L~~n~l~~~-----------------------------------~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~ 204 (455)
T 3v47_A 160 DLTFNKVKSI-----------------------------------CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204 (455)
T ss_dssp ECTTCCBSCC-----------------------------------CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred eCCCCccccc-----------------------------------ChhhhhccccccccccccccCcccccchhhccccc
Confidence 5554432111 0111111001334444444443322111
Q ss_pred --CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCccccccc-ccCCCCcCCcc--cCCCccceEe
Q 047598 820 --SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDT-NIKGNDHADRV--EIFPRLHKLS 894 (1112)
Q Consensus 820 --~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~--~~~p~L~~L~ 894 (1112)
.+..+++|+.|++++|......+..+... ...++|+.|+++++........ ..........+ ..+++|+.|+
T Consensus 205 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (455)
T 3v47_A 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDA---IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281 (455)
T ss_dssp HCCTTTTCEEEEEECTTSCCCHHHHHHHHHH---TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEE
T ss_pred cccccccceeeeEecCCCcccccchhhhhcc---ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEE
Confidence 11233444444444443322222211110 0013444444443221111000 00000000001 1246788888
Q ss_pred EecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCC-CCCCCCCeEEEcCCc
Q 047598 895 IMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEE-GFPTNLASLVIGGDV 973 (1112)
Q Consensus 895 l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~ 973 (1112)
+++ +++++..|..+..+++|+. |+++++......|..+..+++|++|++++|......+.. +.+++|+.|++++|
T Consensus 282 l~~-n~l~~~~~~~~~~l~~L~~--L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N- 357 (455)
T 3v47_A 282 LSK-SKIFALLKSVFSHFTDLEQ--LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN- 357 (455)
T ss_dssp CCS-SCCCEECTTTTTTCTTCCE--EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-
T ss_pred ecC-ccccccchhhcccCCCCCE--EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-
Confidence 888 5777666766766666653 334444433344567778888888888888543333332 45788888888888
Q ss_pred ccccccccccCCCCCCcCEEEEcccCCccccccCcccccccCCCCccEEEecCCCCCCcCCCCCCCCeEEeecCCCCCcC
Q 047598 974 KMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKKLKKLSLMTSLEYLWIKNCPNLASF 1053 (1112)
Q Consensus 974 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L~~l~~l~~L~~L~ls~c~~l~~l 1053 (1112)
......+..+..+++|++|++++|. ++.+|... +..+++|++|++++|+.....
T Consensus 358 -~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~----------------------~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 358 -HIRALGDQSFLGLPNLKELALDTNQ---LKSVPDGI----------------------FDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSSC---CSCCCTTT----------------------TTTCTTCCEEECCSSCBCCCT
T ss_pred -cccccChhhccccccccEEECCCCc---cccCCHhH----------------------hccCCcccEEEccCCCcccCC
Confidence 4445556678888888888888876 44444322 224789999999999887776
Q ss_pred CC
Q 047598 1054 PE 1055 (1112)
Q Consensus 1054 p~ 1055 (1112)
|.
T Consensus 412 ~~ 413 (455)
T 3v47_A 412 PR 413 (455)
T ss_dssp TT
T ss_pred Cc
Confidence 64
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=6.1e-25 Score=254.87 Aligned_cols=207 Identities=18% Similarity=0.150 Sum_probs=105.3
Q ss_pred cccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEE
Q 047598 588 LPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHL 667 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 667 (1112)
+..+++|++|++++|.+..+| .++.+++|++|+|++|.+..+| ++.+++|++|++++| .+..+| ++.+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEE
Confidence 344455555555555555554 4555555555555555555554 555555555555555 344443 5555555555
Q ss_pred eecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceE
Q 047598 668 DIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLS 747 (1112)
Q Consensus 668 ~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 747 (1112)
++++|. +..+| ++.+++|++|++..+..... .+..+++|+.+. +. ....... ..+..+++|+.|+
T Consensus 112 ~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~----l~---~n~~~~~---~~~~~l~~L~~L~ 176 (457)
T 3bz5_A 112 NCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELD----CH---LNKKITK---LDVTPQTQLTTLD 176 (457)
T ss_dssp ECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEE----CT---TCSCCCC---CCCTTCTTCCEEE
T ss_pred ECCCCc-CCeec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEE----CC---CCCcccc---cccccCCcCCEEE
Confidence 555555 33343 55555555555544443332 122222222221 00 0000000 0234455666666
Q ss_pred EEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCc
Q 047598 748 LEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSL 827 (1112)
Q Consensus 748 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 827 (1112)
++++.... +. +..+++|+.|.+.++....++ +.. +++|+.|++++|.+.+ +| ++.+++|
T Consensus 177 ls~n~l~~--------------l~-l~~l~~L~~L~l~~N~l~~~~--l~~--l~~L~~L~Ls~N~l~~-ip-~~~l~~L 235 (457)
T 3bz5_A 177 CSFNKITE--------------LD-VSQNKLLNRLNCDTNNITKLD--LNQ--NIQLTFLDCSSNKLTE-ID-VTPLTQL 235 (457)
T ss_dssp CCSSCCCC--------------CC-CTTCTTCCEEECCSSCCSCCC--CTT--CTTCSEEECCSSCCSC-CC-CTTCTTC
T ss_pred CCCCccce--------------ec-cccCCCCCEEECcCCcCCeec--ccc--CCCCCEEECcCCcccc-cC-ccccCCC
Confidence 66654311 11 344556666776666655553 322 6677777777776654 44 6667777
Q ss_pred ceEEecCCC
Q 047598 828 RELTIQGLT 836 (1112)
Q Consensus 828 ~~L~L~~~~ 836 (1112)
+.|++++|.
T Consensus 236 ~~L~l~~N~ 244 (457)
T 3bz5_A 236 TYFDCSVNP 244 (457)
T ss_dssp SEEECCSSC
T ss_pred CEEEeeCCc
Confidence 777777653
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.4e-24 Score=254.56 Aligned_cols=342 Identities=17% Similarity=0.226 Sum_probs=213.7
Q ss_pred CCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCC
Q 047598 559 TENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLL 638 (1112)
Q Consensus 559 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~ 638 (1112)
++++++|.+.++. + ..+ + .+..+++|++|+|++|.+..+|. +..+++|++|++++|.+..+|. +++++
T Consensus 45 l~~l~~L~l~~~~-------i-~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 45 LDQVTTLQADRLG-------I-KSI-D-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLT 112 (466)
T ss_dssp HHTCCEEECCSSC-------C-CCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred hccccEEecCCCC-------C-ccC-c-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCC
Confidence 4566777665442 1 112 1 26778999999999999988887 9999999999999999998877 99999
Q ss_pred CCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCee
Q 047598 639 NLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGEL 718 (1112)
Q Consensus 639 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l 718 (1112)
+|++|++++| .+..+|. +.++++|++|++++|. +..+| .++.+++|+.|++.. ..... ..
T Consensus 113 ~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~-~~~~~-~~-------------- 172 (466)
T 1o6v_A 113 NLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN-QVTDL-KP-------------- 172 (466)
T ss_dssp TCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE-SCCCC-GG--------------
T ss_pred CCCEEECCCC-CCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCC-cccCc-hh--------------
Confidence 9999999998 6777776 8999999999999998 55565 488888888887642 21111 11
Q ss_pred EEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCC
Q 047598 719 CISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGD 798 (1112)
Q Consensus 719 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 798 (1112)
+.++++|+.|+++++.... +..+..+++|+.|.+.++....++. +..
T Consensus 173 ------------------~~~l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~l~~n~l~~~~~-~~~ 219 (466)
T 1o6v_A 173 ------------------LANLTTLERLDISSNKVSD--------------ISVLAKLTNLESLIATNNQISDITP-LGI 219 (466)
T ss_dssp ------------------GTTCTTCCEEECCSSCCCC--------------CGGGGGCTTCSEEECCSSCCCCCGG-GGG
T ss_pred ------------------hccCCCCCEEECcCCcCCC--------------ChhhccCCCCCEEEecCCccccccc-ccc
Confidence 2333455555555443210 1123334556666666655544433 222
Q ss_pred CCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCC
Q 047598 799 PLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGN 878 (1112)
Q Consensus 799 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 878 (1112)
+++|+.|++++|.+.. ++.+..+++|+.|++++|.... ++. +. .+++|+.|+++++. ...
T Consensus 220 --l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~-~~~-~~------~l~~L~~L~l~~n~---------l~~ 279 (466)
T 1o6v_A 220 --LTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISN-LAP-LS------GLTKLTELKLGANQ---------ISN 279 (466)
T ss_dssp --CTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCC-CGG-GT------TCTTCSEEECCSSC---------CCC
T ss_pred --cCCCCEEECCCCCccc-chhhhcCCCCCEEECCCCcccc-chh-hh------cCCCCCEEECCCCc---------cCc
Confidence 5666666666665432 3556666666666666654322 211 11 15666666666521 111
Q ss_pred CcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCC
Q 047598 879 DHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEE 958 (1112)
Q Consensus 879 ~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~ 958 (1112)
.. .+..+++|+.|++++ +++++..+ +..+.+|+. |.+++|. +..++. +..+++|+.|++++|. +..++..
T Consensus 280 ~~--~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~~--L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~l 349 (466)
T 1o6v_A 280 IS--PLAGLTALTNLELNE-NQLEDISP--ISNLKNLTY--LTLYFNN-ISDISP-VSSLTKLQRLFFYNNK-VSDVSSL 349 (466)
T ss_dssp CG--GGTTCTTCSEEECCS-SCCSCCGG--GGGCTTCSE--EECCSSC-CSCCGG-GGGCTTCCEEECCSSC-CCCCGGG
T ss_pred cc--cccCCCccCeEEcCC-CcccCchh--hcCCCCCCE--EECcCCc-CCCchh-hccCccCCEeECCCCc-cCCchhh
Confidence 11 145566777777776 45553222 333333332 2233332 222322 5677888888888884 4444545
Q ss_pred CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccC
Q 047598 959 GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCH 999 (1112)
Q Consensus 959 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 999 (1112)
..+++|+.|++++|. ..+..+ +..+++|+.|++++|.
T Consensus 350 ~~l~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQ--ISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp TTCTTCCEEECCSSC--CCBCGG--GTTCTTCCEEECCCEE
T ss_pred ccCCCCCEEeCCCCc--cCccch--hhcCCCCCEEeccCCc
Confidence 667888888888883 334444 7788888888888876
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1e-23 Score=244.27 Aligned_cols=401 Identities=19% Similarity=0.187 Sum_probs=217.9
Q ss_pred eeEEEEEeCCCCCccchhhhccCCCcceeccccccCCcccccccccccccccccCCc-------------ccEEEecccc
Q 047598 537 VRHSSYVRGGYDGRSKFEVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKR-------------LRVLSLQRYY 603 (1112)
Q Consensus 537 ~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------L~~L~L~~~~ 603 (1112)
++.+.+..+.. ..-+..+.++++|+.|.+..+. +.+.. +..+..+.+ ++.|++++|.
T Consensus 13 L~~L~l~~n~l--~~iP~~i~~L~~L~~L~l~~n~-------~~~~~-p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 13 LQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSE-------WERNA-PPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -----------------------CCHHHHHHHHHH-------HHHTS-CTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred chhhhcccCch--hhCChhHhcccchhhhhccCCc-------ccccC-CcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 44444444433 1234456777777777766543 22222 223444444 3778888887
Q ss_pred cccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCC
Q 047598 604 IGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMK 683 (1112)
Q Consensus 604 ~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 683 (1112)
++.+|.. .++|++|++++|.+..+|.. +.+|++|++++| .+..+|.. .++|++|++++|. +..+| .++
T Consensus 83 l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~ 150 (454)
T 1jl5_A 83 LSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQ 150 (454)
T ss_dssp CSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSC-CSSCC-CCT
T ss_pred cccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCC-CCCCc-ccC
Confidence 7777652 35778888888877777753 367788888877 56655542 1578888888877 45577 577
Q ss_pred CCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhh
Q 047598 684 ELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVME 763 (1112)
Q Consensus 684 ~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 763 (1112)
.+++|++|++.++.....+..+ .+|+.|++++|...
T Consensus 151 ~l~~L~~L~l~~N~l~~lp~~~-----------------------------------~~L~~L~L~~n~l~--------- 186 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKKLPDLP-----------------------------------PSLEFIAAGNNQLE--------- 186 (454)
T ss_dssp TCTTCCEEECCSSCCSCCCCCC-----------------------------------TTCCEEECCSSCCS---------
T ss_pred CCCCCCEEECCCCcCcccCCCc-----------------------------------ccccEEECcCCcCC---------
Confidence 7788887777665443322111 25666777666431
Q ss_pred hHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceecCc
Q 047598 764 EYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSIGS 843 (1112)
Q Consensus 764 ~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~ 843 (1112)
.+..+..+++|+.|++.+|....+|.. .++|++|++++|.+. .+|.++.+++|+.|++++|. +..++.
T Consensus 187 -----~l~~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~-l~~l~~ 254 (454)
T 1jl5_A 187 -----ELPELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNL-LKTLPD 254 (454)
T ss_dssp -----SCCCCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC-CSSCCS
T ss_pred -----cCccccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCc-CCcccc
Confidence 122455677788888888877766653 357899999988766 67778889999999998864 333432
Q ss_pred cccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEe
Q 047598 844 EVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIA 923 (1112)
Q Consensus 844 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~ 923 (1112)
.+++|+.|+++++. +.. .+ ..+++|+.|++++ |++++ +|...++|+.|. ++
T Consensus 255 ---------~~~~L~~L~l~~N~-l~~---------l~---~~~~~L~~L~ls~-N~l~~-l~~~~~~L~~L~-----l~ 305 (454)
T 1jl5_A 255 ---------LPPSLEALNVRDNY-LTD---------LP---ELPQSLTFLDVSE-NIFSG-LSELPPNLYYLN-----AS 305 (454)
T ss_dssp ---------CCTTCCEEECCSSC-CSC---------CC---CCCTTCCEEECCS-SCCSE-ESCCCTTCCEEE-----CC
T ss_pred ---------cccccCEEECCCCc-ccc---------cC---cccCcCCEEECcC-CccCc-ccCcCCcCCEEE-----Cc
Confidence 15788888888732 111 11 1347899999998 67874 444445666554 33
Q ss_pred ccCCcccCcccCCCC-CCcCEEEEecCCCCcccCCCCCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCcc
Q 047598 924 NCEKLEALPNDMHRL-NFLEHLRIGQCPSILSFPEEGFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDE 1002 (1112)
Q Consensus 924 ~~~~l~~lp~~l~~l-~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 1002 (1112)
++ .+..++ .+ ++|++|++++|... .+|. .+++|+.|++++|. ... ++. .+++|+.|++++|.
T Consensus 306 ~N-~l~~i~----~~~~~L~~L~Ls~N~l~-~lp~--~~~~L~~L~L~~N~--l~~-lp~---~l~~L~~L~L~~N~--- 368 (454)
T 1jl5_A 306 SN-EIRSLC----DLPPSLEELNVSNNKLI-ELPA--LPPRLERLIASFNH--LAE-VPE---LPQNLKQLHVEYNP--- 368 (454)
T ss_dssp SS-CCSEEC----CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSC--CSC-CCC---CCTTCCEEECCSSC---
T ss_pred CC-cCCccc----CCcCcCCEEECCCCccc-cccc--cCCcCCEEECCCCc--ccc-ccc---hhhhccEEECCCCC---
Confidence 33 222232 23 58999999998544 4654 36899999999983 332 333 47899999999987
Q ss_pred ccccCcccccccCCCCccEEEecCCCCCCcCC-CCCCCCeEEeecCCCCCcCCCCCCCCCccEEEEccCcc
Q 047598 1003 VECFPNEEMGVMLPSSLTHLTIAGFKKLKKLS-LMTSLEYLWIKNCPNLASFPELGLPSSLTQLYIDHCPL 1072 (1112)
Q Consensus 1003 l~~l~~~~~~~~~~~sL~~L~l~~~~~L~~l~-~l~~L~~L~ls~c~~l~~lp~~~~~~~L~~L~l~~c~~ 1072 (1112)
+..+| .+|.++..|.... ....++ .+++|+.|++++|+..+ +|. .+++|+.|.+.+|..
T Consensus 369 l~~l~------~ip~~l~~L~~n~--~~~~i~~~~~~L~~L~ls~N~l~~-~~~--iP~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 369 LREFP------DIPESVEDLRMNS--HLAEVPELPQNLKQLHVETNPLRE-FPD--IPESVEDLRMNSERV 428 (454)
T ss_dssp CSSCC------CCCTTCCEEECCC-----------------------------------------------
T ss_pred CCcCC------CChHHHHhhhhcc--cccccccccCcCCEEECCCCcCCc-ccc--chhhHhheeCcCccc
Confidence 44433 2566677765322 122222 35899999999996654 232 245788888888754
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1e-23 Score=259.36 Aligned_cols=461 Identities=18% Similarity=0.139 Sum_probs=247.8
Q ss_pred CcccEEEeccccccccc-ccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccCc-cccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLPS-KMRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 668 (1112)
.++++|||++|.|+.+| .+|.++++|++|+|++|.|+.+|+ .|.+|++|++|+|++| .+..+|. .|.+|++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 57999999999999997 579999999999999999999876 5899999999999998 6888875 589999999999
Q ss_pred ecCCCccccCCCC-CCCCCCCCccCeeeeccCCc--ccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCc
Q 047598 669 IKGANLLREMPLG-MKELKNLRTLSNFIVGKGEA--ISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKT 745 (1112)
Q Consensus 669 L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~--~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 745 (1112)
+++|. +..+|.. ++++++|++|++..+..... +..+..+++|+.|. ...+.+....+..+..+.+++.
T Consensus 131 Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~--------L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 131 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD--------LSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE--------CCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc--------ccCccccccccccccchhhhhh
Confidence 99998 6667654 89999999999988875442 33445555555442 1112222222223333323222
Q ss_pred ----eEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCC--CCCCccCCCCCCceeEEEEcCcCC--CCC
Q 047598 746 ----LSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGA--RFPSWLGDPLFSKMEVLKLENCWN--CTS 817 (1112)
Q Consensus 746 ----L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~L~~~~~--~~~ 817 (1112)
++++.+... ...........+..+.+.++... ..+..+.. +..++...+..+.. ...
T Consensus 202 ~~~~~~ls~n~l~-------------~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~--l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 202 LNLSLDLSLNPMN-------------FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG--LAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp CCCEEECTTCCCC-------------EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHT--TTTCEEEEEEEECCTTSCC
T ss_pred hhhhhhcccCccc-------------ccCcccccchhhhhhhhhcccccccccchhhcC--Ccccccccccccccccccc
Confidence 222222110 00000111122334444433211 00111211 34444444332211 111
Q ss_pred C-----CCCCCCCCcceEEecCCCCc---eecCccccCCCCcccCcccceeecCCCCc-----------ccccc--cccC
Q 047598 818 L-----PSLGLLSSLRELTIQGLTKL---KSIGSEVYGKGFSKPFQSLEILSFENLPE-----------WEYWD--TNIK 876 (1112)
Q Consensus 818 l-----~~l~~l~~L~~L~L~~~~~l---~~i~~~~~~~~~~~~~~~L~~L~l~~~~~-----------l~~~~--~~~~ 876 (1112)
+ ..+..+..+..+.+..+... ..+...+ ..+.+++.+.+.+... ++... .+..
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~------~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 340 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF------NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 340 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT------GGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEE
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhh------hhhcccccccccccccccccccccchhhhhhhcccccc
Confidence 1 12333444444444332111 1111111 1123333333322110 00000 0000
Q ss_pred CCCcCCcccCCCccceEeEecCCCCCCCCC-CCCCCcceeEE---------------------eEEEEeccCCcccCccc
Q 047598 877 GNDHADRVEIFPRLHKLSIMECPKLSGKLP-ELLPSLETLVV---------------------ATFVIANCEKLEALPND 934 (1112)
Q Consensus 877 ~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p-~~~~~L~~L~~---------------------~~L~~~~~~~l~~lp~~ 934 (1112)
... ....++.|+.+.+.+ +......+ ..+++|+.|.+ ..+.+..+ ....++..
T Consensus 341 ~~~---~~~~l~~L~~l~l~~-n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~ 415 (635)
T 4g8a_A 341 GQF---PTLKLKSLKRLTFTS-NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSN 415 (635)
T ss_dssp SSC---CCCBCTTCCEEEEES-CCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC-SEEEECSC
T ss_pred cCc---Ccccchhhhhccccc-ccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccc-cccccccc
Confidence 000 001233444444444 22221111 01122222211 01111111 11122344
Q ss_pred CCCCCCcCEEEEecCCCCcccCCC--CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCccccc
Q 047598 935 MHRLNFLEHLRIGQCPSILSFPEE--GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMG 1012 (1112)
Q Consensus 935 l~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~ 1012 (1112)
+..+++|+.+++.+|......+.. ..+++++.++++.| ......+..+..+++|+.|++++|.. ...+....+.
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n--~l~~~~~~~~~~~~~L~~L~Ls~N~~--~~~~~~~~~~ 491 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAGNSF--QENFLPDIFT 491 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS--CCEECCTTTTTTCTTCCEEECTTCEE--GGGEECSCCT
T ss_pred ccccccccchhhhhcccccccccccccccccccccccccc--ccccccccccccchhhhhhhhhhccc--ccccCchhhh
Confidence 556677777777766554444333 34667788888777 44455566677888888999988752 2222222222
Q ss_pred ccCCCCccEEEecCCCCCCc-----CCCCCCCCeEEeecCCCCCcCCC--CCCCCCccEEEEccCcchHHhhccCCCCcc
Q 047598 1013 VMLPSSLTHLTIAGFKKLKK-----LSLMTSLEYLWIKNCPNLASFPE--LGLPSSLTQLYIDHCPLVKKECKMDKGKEW 1085 (1112)
Q Consensus 1013 ~~~~~sL~~L~l~~~~~L~~-----l~~l~~L~~L~ls~c~~l~~lp~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 1085 (1112)
..++|+.|+++++ .++. +..+++|++|+|++|. +..++. +..+++|++|++++|.... ...+.+
T Consensus 492 --~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~l 562 (635)
T 4g8a_A 492 --ELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMT-----SKKQEL 562 (635)
T ss_dssp --TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCB-----CCSSCT
T ss_pred --hccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCC-----CCHHHH
Confidence 3468999999986 4443 4478999999999994 455543 6788999999999997543 122233
Q ss_pred ccc-cccceeEeCCeec
Q 047598 1086 SKI-AHIPCVEIDDKFI 1101 (1112)
Q Consensus 1086 ~ki-~~i~~~~~~~~~~ 1101 (1112)
..+ +.+..+.+.+|++
T Consensus 563 ~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp TCCCTTCCEEECTTCCB
T ss_pred HhhhCcCCEEEeeCCCC
Confidence 334 5677888888764
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2.5e-24 Score=252.49 Aligned_cols=359 Identities=14% Similarity=0.076 Sum_probs=220.9
Q ss_pred CCcceeccccccCCcccccccccccccccccCCcccEEEecccccc-cc-cccccCCCcCcEEEccccccccc-cccccC
Q 047598 560 ENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIG-EL-LVSFEDLKLLRYLNLADTMIRTL-PESTNS 636 (1112)
Q Consensus 560 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l-p~~~~~l~~Lr~L~Ls~n~i~~l-p~~i~~ 636 (1112)
++++.|.+.++. + ..+.+..|.++++|++|+|++|.+. .+ +..|.++++|++|+|++|.+..+ |..|++
T Consensus 30 ~~l~~L~Ls~n~-------i-~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 101 (455)
T 3v47_A 30 AHVNYVDLSLNS-------I-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG 101 (455)
T ss_dssp TTCCEEECCSSC-------C-CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT
T ss_pred CccCEEEecCCc-------c-CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC
Confidence 788999887764 2 2344566899999999999999885 55 46799999999999999999876 778999
Q ss_pred CCCCcEEeecCCCCCcccCcc--ccCCccccEEeecCCCccccCCCC-CCCCCCCCccCeeeeccCCc-ccCcccccccc
Q 047598 637 LLNLEILILRNCSRLKKLPSK--MRNLINLHHLDIKGANLLREMPLG-MKELKNLRTLSNFIVGKGEA-ISGLEDLKNLK 712 (1112)
Q Consensus 637 L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~-~~~l~~l~~L~ 712 (1112)
+++|++|+|++|......|.. +..+++|++|++++|.+....|.. ++++++|++|++.++..... +..+..+.
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--- 178 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ--- 178 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT---
T ss_pred cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc---
Confidence 999999999999443345554 899999999999999955544665 88999999999887765432 11222110
Q ss_pred ccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCC
Q 047598 713 FLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARF 792 (1112)
Q Consensus 713 ~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~ 792 (1112)
..+|+.|+++.+.......... .......+..
T Consensus 179 ---------------------------~~~L~~L~l~~n~l~~~~~~~~----~~~~~~~~~~----------------- 210 (455)
T 3v47_A 179 ---------------------------GKHFTLLRLSSITLQDMNEYWL----GWEKCGNPFK----------------- 210 (455)
T ss_dssp ---------------------------TCEEEEEECTTCBCTTCSTTCT----THHHHCCTTT-----------------
T ss_pred ---------------------------cccccccccccCcccccchhhc----cccccccccc-----------------
Confidence 0133333333322110000000 0000011111
Q ss_pred CCccCCCCCCceeEEEEcCcCCCCCCC-C---CCCCCCcceEEecCCCCceecCcc-ccCC-----CCcccCcccceeec
Q 047598 793 PSWLGDPLFSKMEVLKLENCWNCTSLP-S---LGLLSSLRELTIQGLTKLKSIGSE-VYGK-----GFSKPFQSLEILSF 862 (1112)
Q Consensus 793 p~~~~~~~l~~L~~L~L~~~~~~~~l~-~---l~~l~~L~~L~L~~~~~l~~i~~~-~~~~-----~~~~~~~~L~~L~l 862 (1112)
+++|+.|++++|.+.+..| . ....++|+.|++++|......... .... ......++|+.|++
T Consensus 211 --------~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 282 (455)
T 3v47_A 211 --------NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282 (455)
T ss_dssp --------TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEEC
T ss_pred --------cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEe
Confidence 3445555555554433222 1 111244555555544322110000 0000 00001356666666
Q ss_pred CCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcC
Q 047598 863 ENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLE 942 (1112)
Q Consensus 863 ~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~ 942 (1112)
+++ ......+..+..+++|++|++++ |++++..|..+..+++|+.+ +++++.-....|..+..+++|+
T Consensus 283 ~~n---------~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L--~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 283 SKS---------KIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKL--NLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp CSS---------CCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEE--ECCSSCCCEECGGGGTTCTTCC
T ss_pred cCc---------cccccchhhcccCCCCCEEECCC-CcccccChhHhcCcccCCEE--ECCCCccCCcChhHhcCcccCC
Confidence 652 22223344456677777777777 56765556666666666533 3444433223456678899999
Q ss_pred EEEEecCCCCcccCCC-CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccC
Q 047598 943 HLRIGQCPSILSFPEE-GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCH 999 (1112)
Q Consensus 943 ~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 999 (1112)
+|++++|......|.. ..+++|+.|++++| ......+..+..+++|+.|+|++|+
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTN--QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhhccccccccEEECCCC--ccccCCHhHhccCCcccEEEccCCC
Confidence 9999999655444443 56789999999998 4445555667899999999999986
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.3e-23 Score=236.79 Aligned_cols=102 Identities=20% Similarity=0.320 Sum_probs=78.4
Q ss_pred cccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEE
Q 047598 588 LPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHL 667 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 667 (1112)
+..+++|++|+++++.+..+|. +..+++|++|++++|.+..+|. +..+++|++|++++| .+..+| .+..+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEE
Confidence 3466788888888888887764 7888889999999888888877 888889999999887 677766 48888888888
Q ss_pred eecCCCccccCCCCCCCCCCCCccCeee
Q 047598 668 DIKGANLLREMPLGMKELKNLRTLSNFI 695 (1112)
Q Consensus 668 ~L~~~~~l~~lp~~i~~l~~L~~L~~~~ 695 (1112)
++++|. +..+|. +..+++|+.|++.+
T Consensus 116 ~l~~n~-i~~~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 116 YLNEDN-ISDISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp ECTTSC-CCCCGG-GTTCTTCCEEECTT
T ss_pred ECcCCc-ccCchh-hccCCceeEEECCC
Confidence 888887 445544 55666666665443
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.9e-23 Score=242.21 Aligned_cols=358 Identities=14% Similarity=0.123 Sum_probs=209.7
Q ss_pred cccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCC
Q 047598 608 LVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKN 687 (1112)
Q Consensus 608 p~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 687 (1112)
+..++.+++|++|++++|.+..+| .++.+++|++|++++| .+..+| ++.+++|++|++++|. +..+| ++.+++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCc
Confidence 446788999999999999999987 7999999999999998 677776 8999999999999998 56665 889999
Q ss_pred CCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHH
Q 047598 688 LRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAV 767 (1112)
Q Consensus 688 L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 767 (1112)
|++|++.++.....+ +..+++|+.|. + ..+.+... .+..+++|+.|+++.|.....
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~----l----~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~----------- 163 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLN----C----ARNTLTEI---DVSHNTQLTELDCHLNKKITK----------- 163 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEE----C----TTSCCSCC---CCTTCTTCCEEECTTCSCCCC-----------
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEE----C----CCCcccee---ccccCCcCCEEECCCCCcccc-----------
Confidence 999999888765542 44444444442 1 11111111 244555566666555432110
Q ss_pred hhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceecCccccC
Q 047598 768 GVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSIGSEVYG 847 (1112)
Q Consensus 768 ~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~ 847 (1112)
+ .+..+++|+.|+++++....+| +.. +++|+.|++++|.+... .++.+++|+.|++++|.. ..+|
T Consensus 164 --~-~~~~l~~L~~L~ls~n~l~~l~--l~~--l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l-~~ip----- 228 (457)
T 3bz5_A 164 --L-DVTPQTQLTTLDCSFNKITELD--VSQ--NKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKL-TEID----- 228 (457)
T ss_dssp --C-CCTTCTTCCEEECCSSCCCCCC--CTT--CTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCC-SCCC-----
T ss_pred --c-ccccCCcCCEEECCCCccceec--ccc--CCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcc-cccC-----
Confidence 0 1233444555555555444444 222 44555555555544332 244455555555554422 2222
Q ss_pred CCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeE-----EeEEEE
Q 047598 848 KGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLV-----VATFVI 922 (1112)
Q Consensus 848 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~-----~~~L~~ 922 (1112)
+..+++|+.|++++ |++++..+..+++|+.|. +..+++
T Consensus 229 ------------------------------------~~~l~~L~~L~l~~-N~l~~~~~~~l~~L~~L~l~~n~L~~L~l 271 (457)
T 3bz5_A 229 ------------------------------------VTPLTQLTYFDCSV-NPLTELDVSTLSKLTTLHCIQTDLLEIDL 271 (457)
T ss_dssp ------------------------------------CTTCTTCSEEECCS-SCCSCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred ------------------------------------ccccCCCCEEEeeC-CcCCCcCHHHCCCCCEEeccCCCCCEEEC
Confidence 23444444444444 344433333333333331 122334
Q ss_pred eccCCcccCcccCCCCCCcCEEEEecCCCCcccCCC---------CCCCCCCeEEEcCCcccccccccccCCCCCCcCEE
Q 047598 923 ANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEE---------GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRL 993 (1112)
Q Consensus 923 ~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~---------~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 993 (1112)
++|..+..+| +..+++|+.|++++|+.++.+|.. ..+++|+.|++++| ...+. .+..+++|+.|
T Consensus 272 ~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N--~l~~l---~l~~l~~L~~L 344 (457)
T 3bz5_A 272 THNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT--ELTEL---DVSHNTKLKSL 344 (457)
T ss_dssp TTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC--CCSCC---CCTTCTTCSEE
T ss_pred CCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC--ccccc---ccccCCcCcEE
Confidence 5555555555 456788888888888766665531 23467777777777 33332 37778888888
Q ss_pred EEcccCCccccccCcccccccCCCCccEEEecCCCCCCcCCCCCCCCeEEeecCCCCCcCCC--CCCCCCccEEEEcc
Q 047598 994 EIDGCHDDEVECFPNEEMGVMLPSSLTHLTIAGFKKLKKLSLMTSLEYLWIKNCPNLASFPE--LGLPSSLTQLYIDH 1069 (1112)
Q Consensus 994 ~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~~~~~L~~l~~l~~L~~L~ls~c~~l~~lp~--~~~~~~L~~L~l~~ 1069 (1112)
++++|+. ..++ +|..|.++. ..+...+.+.+|..+++++|.....+|. +.....+.....+.
T Consensus 345 ~l~~N~l---~~l~----------~L~~L~l~~-n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~ 408 (457)
T 3bz5_A 345 SCVNAHI---QDFS----------SVGKIPALN-NNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408 (457)
T ss_dssp ECCSSCC---CBCT----------TGGGSSGGG-TSEEEEEEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESS
T ss_pred ECCCCCC---CCcc----------ccccccccC-CcEEecceeeecCccccccCcEEEEcChhHhcccCceeeccCCC
Confidence 8888763 2222 222222221 1111123456677888998887778875 33344555554443
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.3e-22 Score=237.03 Aligned_cols=287 Identities=22% Similarity=0.275 Sum_probs=161.0
Q ss_pred cEEEecccccccccccccCCCcCcEEEcccccccccc-ccccCCCCCcEEeecCCCCCccc-CccccCCccccEEeecCC
Q 047598 595 RVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLP-ESTNSLLNLEILILRNCSRLKKL-PSKMRNLINLHHLDIKGA 672 (1112)
Q Consensus 595 ~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~ 672 (1112)
+.++.+++.+..+|..+. .+|++|+|++|.+..++ ..|.++++|++|+|++| .+..+ |..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC
Confidence 456777777777777654 47888888888887664 56778888888888887 44444 667788888888888877
Q ss_pred CccccCCCC-CCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeC
Q 047598 673 NLLREMPLG-MKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWG 751 (1112)
Q Consensus 673 ~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 751 (1112)
. +..+|.. ++++++|++|++.++.....
T Consensus 91 ~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-------------------------------------------------- 119 (477)
T 2id5_A 91 R-LKLIPLGVFTGLSNLTKLDISENKIVIL-------------------------------------------------- 119 (477)
T ss_dssp C-CCSCCTTSSTTCTTCCEEECTTSCCCEE--------------------------------------------------
T ss_pred c-CCccCcccccCCCCCCEEECCCCccccC--------------------------------------------------
Confidence 7 4555543 45555555554432211000
Q ss_pred CCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcceE
Q 047598 752 SQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLREL 830 (1112)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 830 (1112)
.|..+.. +++|+.|+|++|.+....+ .++.+++|+.|
T Consensus 120 ----------------------------------------~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 120 ----------------------------------------LDYMFQD--LYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp ----------------------------------------CTTTTTT--CTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred ----------------------------------------ChhHccc--cccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 1112222 6788888888887765544 78889999999
Q ss_pred EecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCC
Q 047598 831 TIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLP 910 (1112)
Q Consensus 831 ~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~ 910 (1112)
++++|. +..++...+.. +++|+.|+++++ ......+..+..+++|+.|++++|+.+. .+|....
T Consensus 158 ~l~~n~-l~~~~~~~l~~-----l~~L~~L~l~~n---------~i~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~ 221 (477)
T 2id5_A 158 TLEKCN-LTSIPTEALSH-----LHGLIVLRLRHL---------NINAIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCL 221 (477)
T ss_dssp EEESCC-CSSCCHHHHTT-----CTTCCEEEEESC---------CCCEECTTCSCSCTTCCEEEEECCTTCC-EECTTTT
T ss_pred ECCCCc-CcccChhHhcc-----cCCCcEEeCCCC---------cCcEeChhhcccCcccceeeCCCCcccc-ccCcccc
Confidence 999874 44444332222 677777777762 1122223345566777777777755444 3443322
Q ss_pred CcceeEEeEEEEeccCCcccCc-ccCCCCCCcCEEEEecCCCCcccCCC--CCCCCCCeEEEcCCcccccccccccCCCC
Q 047598 911 SLETLVVATFVIANCEKLEALP-NDMHRLNFLEHLRIGQCPSILSFPEE--GFPTNLASLVIGGDVKMYKGLIQWGLHRL 987 (1112)
Q Consensus 911 ~L~~L~~~~L~~~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l 987 (1112)
...+|+ .|+++++ .+..+| ..+..+++|+.|+|++|... .++.. ..+++|+.|+|++| ......+..+..+
T Consensus 222 ~~~~L~--~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l 295 (477)
T 2id5_A 222 YGLNLT--SLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGG--QLAVVEPYAFRGL 295 (477)
T ss_dssp TTCCCS--EEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSS--CCSEECTTTBTTC
T ss_pred cCcccc--EEECcCC-cccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCC--ccceECHHHhcCc
Confidence 222222 1223332 223333 23445555555555555322 22221 23445555555554 2223334444455
Q ss_pred CCcCEEEEcccC
Q 047598 988 TALRRLEIDGCH 999 (1112)
Q Consensus 988 ~~L~~L~l~~n~ 999 (1112)
++|+.|+|++|.
T Consensus 296 ~~L~~L~L~~N~ 307 (477)
T 2id5_A 296 NYLRVLNVSGNQ 307 (477)
T ss_dssp TTCCEEECCSSC
T ss_pred ccCCEEECCCCc
Confidence 555555555543
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=5.5e-23 Score=235.32 Aligned_cols=215 Identities=18% Similarity=0.145 Sum_probs=137.8
Q ss_pred cCCCcceeccccccCCcccccccccccccccccCCcccEEEeccccccccc-ccccCCCcCcEEEccccccccccc-ccc
Q 047598 558 QTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPE-STN 635 (1112)
Q Consensus 558 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~ 635 (1112)
.+++++.+.+.++. ...++...|..+++|++|++++|.+..++ ..|..+++|++|+|++|.+..+|+ .++
T Consensus 43 ~l~~l~~l~l~~~~--------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFKNST--------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEESCE--------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCceEEEecCCc--------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 35667777665542 23455555677788888888888877765 367888888888888888776654 467
Q ss_pred CCCCCcEEeecCCCCCcccCcc-ccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCcccccccccc
Q 047598 636 SLLNLEILILRNCSRLKKLPSK-MRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFL 714 (1112)
Q Consensus 636 ~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L 714 (1112)
++++|++|++++| .+..+|.. +.++++|++|++++|.+....|..++.+++|++|++.++..... .
T Consensus 115 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~---------- 181 (390)
T 3o6n_A 115 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--D---------- 181 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--C----------
T ss_pred CCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--c----------
Confidence 8888888888887 66677765 47788888888888874333344577777888777766543322 1
Q ss_pred CCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCC
Q 047598 715 GGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPS 794 (1112)
Q Consensus 715 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~ 794 (1112)
+..+++|+.|+++++.. ..+..+..|+.|+++++....+|.
T Consensus 182 ----------------------~~~l~~L~~L~l~~n~l-----------------~~~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 182 ----------------------LSLIPSLFHANVSYNLL-----------------STLAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp ----------------------GGGCTTCSEEECCSSCC-----------------SEEECCSSCSEEECCSSCCCEEEC
T ss_pred ----------------------cccccccceeecccccc-----------------cccCCCCcceEEECCCCeeeeccc
Confidence 12234555555554432 112234456677777666655554
Q ss_pred ccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCC
Q 047598 795 WLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTK 837 (1112)
Q Consensus 795 ~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~ 837 (1112)
.. +++|+.|++++|.+.. .+.++.+++|+.|++++|..
T Consensus 223 ~~----~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 223 PV----NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp CC----CSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC
T ss_pred cc----cccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcC
Confidence 32 4667777777776543 35666677777777776643
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.3e-22 Score=245.14 Aligned_cols=236 Identities=19% Similarity=0.149 Sum_probs=154.9
Q ss_pred cCCCcceeccccccCCcccccccccccccccccCCcccEEEeccccccccc-ccccCCCcCcEEEcccccccccccc-cc
Q 047598 558 QTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPES-TN 635 (1112)
Q Consensus 558 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~~-i~ 635 (1112)
.+.+++.+.+.++. ...+++..|..+++|++|+|++|.+..++ ..|+.+++|++|+|++|.+..+|+. |+
T Consensus 49 ~l~~l~~l~l~~~~--------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNST--------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCE--------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCC--------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 34566666655432 23455666777888888888888887765 4788888888888888888876654 57
Q ss_pred CCCCCcEEeecCCCCCcccCcc-ccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCcccccccccc
Q 047598 636 SLLNLEILILRNCSRLKKLPSK-MRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFL 714 (1112)
Q Consensus 636 ~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L 714 (1112)
++++|++|+|++| .+..+|.. ++++++|++|++++|.+....|..++.+++|++|++.++..... .
T Consensus 121 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~---------- 187 (597)
T 3oja_B 121 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--D---------- 187 (597)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--C----------
T ss_pred CCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--C----------
Confidence 8888888888887 66677665 47888888888888875444444578888888887766543322 1
Q ss_pred CCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCC
Q 047598 715 GGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPS 794 (1112)
Q Consensus 715 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~ 794 (1112)
+..+++|+.|+++++.. ..+..+..|+.|+++++....+|.
T Consensus 188 ----------------------~~~l~~L~~L~l~~n~l-----------------~~l~~~~~L~~L~ls~n~l~~~~~ 228 (597)
T 3oja_B 188 ----------------------LSLIPSLFHANVSYNLL-----------------STLAIPIAVEELDASHNSINVVRG 228 (597)
T ss_dssp ----------------------GGGCTTCSEEECCSSCC-----------------SEEECCTTCSEEECCSSCCCEEEC
T ss_pred ----------------------hhhhhhhhhhhcccCcc-----------------ccccCCchhheeeccCCccccccc
Confidence 12234556666654432 122334567777777777666654
Q ss_pred ccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCC
Q 047598 795 WLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFEN 864 (1112)
Q Consensus 795 ~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~ 864 (1112)
.+ .++|+.|+|++|.+.+ ++.++.+++|+.|+|++|......+..+.. +++|+.|++++
T Consensus 229 ~~----~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~ 287 (597)
T 3oja_B 229 PV----NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISN 287 (597)
T ss_dssp SC----CSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECTT
T ss_pred cc----CCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcC------ccCCCEEECCC
Confidence 43 4578888888877654 356777778888888776544443433332 55666666655
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=6e-22 Score=233.47 Aligned_cols=292 Identities=22% Similarity=0.227 Sum_probs=181.5
Q ss_pred CcccEEEeccccccccc-ccccCCCcCcEEEccccccccc-cccccCCCCCcEEeecCCCCCcccCc-cccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTL-PESTNSLLNLEILILRNCSRLKKLPS-KMRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 668 (1112)
+.+++|+|++|.+..++ ..|.++++|++|+|++|.+..+ |..|+++++|++|+|++| .+..+|. .+.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 57899999999998875 6799999999999999999876 778999999999999998 6777776 478999999999
Q ss_pred ecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEE
Q 047598 669 IKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSL 748 (1112)
Q Consensus 669 L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 748 (1112)
+++|.+....|..+..+++|+.|++..+..... .+..+.++++|+.|++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------------~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-------------------------------SHRAFSGLNSLEQLTL 159 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-------------------------------CTTSSTTCTTCCEEEE
T ss_pred CCCCccccCChhHccccccCCEEECCCCcccee-------------------------------ChhhccCCCCCCEEEC
Confidence 999996666667788999999888766543211 0112344456666666
Q ss_pred EeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCC-ccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCC
Q 047598 749 EWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPS-WLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSS 826 (1112)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 826 (1112)
+.+.. ..+|. .+.. +++|+.|+|++|.+....+ .+..+++
T Consensus 160 ~~n~l------------------------------------~~~~~~~l~~--l~~L~~L~l~~n~i~~~~~~~~~~l~~ 201 (477)
T 2id5_A 160 EKCNL------------------------------------TSIPTEALSH--LHGLIVLRLRHLNINAIRDYSFKRLYR 201 (477)
T ss_dssp ESCCC------------------------------------SSCCHHHHTT--CTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred CCCcC------------------------------------cccChhHhcc--cCCCcEEeCCCCcCcEeChhhcccCcc
Confidence 55532 23332 1222 6677777777776654433 5667777
Q ss_pred cceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCC
Q 047598 827 LRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLP 906 (1112)
Q Consensus 827 L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p 906 (1112)
|+.|++++|..+..++..... ..+|+.|+++++ .........+..+++|+.|++++ |.+++..+
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~n---------~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~ 265 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLY------GLNLTSLSITHC---------NLTAVPYLAVRHLVYLRFLNLSY-NPISTIEG 265 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTT------TCCCSEEEEESS---------CCCSCCHHHHTTCTTCCEEECCS-SCCCEECT
T ss_pred cceeeCCCCccccccCccccc------CccccEEECcCC---------cccccCHHHhcCccccCeeECCC-CcCCccCh
Confidence 777777777666666554433 346666666652 11111112345667777777777 45654333
Q ss_pred CCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCC--CCCCCCCeEEEcCC
Q 047598 907 ELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEE--GFPTNLASLVIGGD 972 (1112)
Q Consensus 907 ~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~ 972 (1112)
..+..+.+|+. |.++++......|..+..+++|+.|+|++|. ++.++.. ..+++|+.|++++|
T Consensus 266 ~~~~~l~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 266 SMLHELLRLQE--IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp TSCTTCTTCCE--EECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSS
T ss_pred hhccccccCCE--EECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCC
Confidence 33333333322 1222222111223444555555666665552 2233322 22345555555554
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=7.5e-22 Score=238.56 Aligned_cols=105 Identities=18% Similarity=0.288 Sum_probs=84.7
Q ss_pred cCCcccEEEeccccccccccc-ccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccC-ccccCCccccE
Q 047598 590 KFKRLRVLSLQRYYIGELLVS-FEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLP-SKMRNLINLHH 666 (1112)
Q Consensus 590 ~~~~L~~L~L~~~~~~~lp~~-~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~ 666 (1112)
.+.++++|++++|.+..+|.. +..+++|++|+|++|.+..+|. .|+.+++|++|+|++| .+..+| ..|+.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 357889999999999988865 6889999999999999987765 7899999999999998 455555 45789999999
Q ss_pred EeecCCCccccCCCC-CCCCCCCCccCeeee
Q 047598 667 LDIKGANLLREMPLG-MKELKNLRTLSNFIV 696 (1112)
Q Consensus 667 L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~ 696 (1112)
|+|++|. +..+|.. ++.+++|++|++.++
T Consensus 128 L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 128 LVLERND-LSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeeCCC-CCCCCHHHhccCCCCCEEEeeCC
Confidence 9999998 5667765 467777777766544
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=3.1e-22 Score=229.07 Aligned_cols=303 Identities=17% Similarity=0.206 Sum_probs=194.7
Q ss_pred cCCcccEEEeccccccccccc-ccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCccc-CccccCCccccE
Q 047598 590 KFKRLRVLSLQRYYIGELLVS-FEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKL-PSKMRNLINLHH 666 (1112)
Q Consensus 590 ~~~~L~~L~L~~~~~~~lp~~-~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~ 666 (1112)
.+.++++|++++|.+..+|.. +..+++|++|+|++|.+..+|. .|+.+++|++|+|++| .+..+ |..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 458899999999999999865 6889999999999999998865 7999999999999998 55555 556899999999
Q ss_pred EeecCCCccccCCCC-CCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCc
Q 047598 667 LDIKGANLLREMPLG-MKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKT 745 (1112)
Q Consensus 667 L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 745 (1112)
|++++|. +..+|.. ++.+++|++|++.++.....+ +..+.++++|+.
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-------------------------------~~~~~~l~~L~~ 169 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIE-------------------------------DDTFQATTSLQN 169 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCC-------------------------------TTTTSSCTTCCE
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccC-------------------------------hhhccCCCCCCE
Confidence 9999998 6788877 588999999988766433221 112344556666
Q ss_pred eEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCC
Q 047598 746 LSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLS 825 (1112)
Q Consensus 746 L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 825 (1112)
|+++.+.. ..++ +. .+++|+.|++++|.+.. +...+
T Consensus 170 L~l~~n~l------------------------------------~~~~--~~--~l~~L~~L~l~~n~l~~----~~~~~ 205 (390)
T 3o6n_A 170 LQLSSNRL------------------------------------THVD--LS--LIPSLFHANVSYNLLST----LAIPI 205 (390)
T ss_dssp EECCSSCC------------------------------------SBCC--GG--GCTTCSEEECCSSCCSE----EECCS
T ss_pred EECCCCcC------------------------------------Cccc--cc--cccccceeecccccccc----cCCCC
Confidence 66665543 1111 11 14555666665554321 22334
Q ss_pred CcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCC
Q 047598 826 SLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKL 905 (1112)
Q Consensus 826 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~ 905 (1112)
+|+.|++++|. +..++... +++|+.|+++++. ... ...+..+++|++|++++ |.+++..
T Consensus 206 ~L~~L~l~~n~-l~~~~~~~--------~~~L~~L~l~~n~--------l~~---~~~l~~l~~L~~L~Ls~-n~l~~~~ 264 (390)
T 3o6n_A 206 AVEELDASHNS-INVVRGPV--------NVELTILKLQHNN--------LTD---TAWLLNYPGLVEVDLSY-NELEKIM 264 (390)
T ss_dssp SCSEEECCSSC-CCEEECCC--------CSSCCEEECCSSC--------CCC---CGGGGGCTTCSEEECCS-SCCCEEE
T ss_pred cceEEECCCCe-eeeccccc--------cccccEEECCCCC--------Ccc---cHHHcCCCCccEEECCC-CcCCCcC
Confidence 56666666543 22222211 4556666666521 110 12345667777777777 4666555
Q ss_pred CCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCC-CCCCCCCeEEEcCCcccccccccccC
Q 047598 906 PELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEE-GFPTNLASLVIGGDVKMYKGLIQWGL 984 (1112)
Q Consensus 906 p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~ 984 (1112)
|..+..+++|+.++ ++++ .+..+|..+..+++|++|++++|. +..+|.. ..+++|+.|++++|. +... .+
T Consensus 265 ~~~~~~l~~L~~L~--L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~--i~~~---~~ 335 (390)
T 3o6n_A 265 YHPFVKMQRLERLY--ISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS--IVTL---KL 335 (390)
T ss_dssp SGGGTTCSSCCEEE--CCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC--CCCC---CC
T ss_pred hhHccccccCCEEE--CCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc--ccee---Cc
Confidence 55555555554322 2332 233455556677888888888884 3344433 446778888888773 2221 26
Q ss_pred CCCCCcCEEEEcccC
Q 047598 985 HRLTALRRLEIDGCH 999 (1112)
Q Consensus 985 ~~l~~L~~L~l~~n~ 999 (1112)
..+++|+.|++++|.
T Consensus 336 ~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 336 STHHTLKNLTLSHND 350 (390)
T ss_dssp CTTCCCSEEECCSSC
T ss_pred hhhccCCEEEcCCCC
Confidence 677788888888875
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=3.9e-22 Score=224.58 Aligned_cols=304 Identities=16% Similarity=0.179 Sum_probs=201.7
Q ss_pred hccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEcccccccccccccc
Q 047598 556 FYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTN 635 (1112)
Q Consensus 556 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~ 635 (1112)
+..+++++.+.+.++.. ..+ + .+..+++|++|++++|.+..++. +..+++|++|++++|.+..+| .+.
T Consensus 40 ~~~l~~L~~L~l~~~~i--------~~~-~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~ 107 (347)
T 4fmz_A 40 QEELESITKLVVAGEKV--------ASI-Q-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQ 107 (347)
T ss_dssp HHHHTTCSEEECCSSCC--------CCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred chhcccccEEEEeCCcc--------ccc-h-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHc
Confidence 34567777777765431 111 1 26778899999999998888876 888999999999999888875 588
Q ss_pred CCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccC
Q 047598 636 SLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLG 715 (1112)
Q Consensus 636 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~ 715 (1112)
.+++|++|++++| .+..+|. +..+++|++|++++|.....++ .+..+++|++|++.++.....+.
T Consensus 108 ~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~------------ 172 (347)
T 4fmz_A 108 NLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP------------ 172 (347)
T ss_dssp TCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG------------
T ss_pred CCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh------------
Confidence 8999999999988 6777776 8889999999999987555544 47888888888776655433211
Q ss_pred CeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCc
Q 047598 716 GELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSW 795 (1112)
Q Consensus 716 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~ 795 (1112)
+..+++|+.|++++|.... +..+..+++|+.|.+.++....++.
T Consensus 173 ---------------------~~~l~~L~~L~l~~n~l~~--------------~~~~~~l~~L~~L~l~~n~l~~~~~- 216 (347)
T 4fmz_A 173 ---------------------IANLTDLYSLSLNYNQIED--------------ISPLASLTSLHYFTAYVNQITDITP- 216 (347)
T ss_dssp ---------------------GGGCTTCSEEECTTSCCCC--------------CGGGGGCTTCCEEECCSSCCCCCGG-
T ss_pred ---------------------hccCCCCCEEEccCCcccc--------------cccccCCCccceeecccCCCCCCch-
Confidence 2333455555555543211 1113345667777777766655554
Q ss_pred cCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCccccccccc
Q 047598 796 LGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNI 875 (1112)
Q Consensus 796 ~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 875 (1112)
+.. +++|++|++++|.+... +.+..+++|+.|++++|. +..++ .+. .+++|+.|+++++. +..+
T Consensus 217 ~~~--~~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~-l~~~~-~~~------~l~~L~~L~l~~n~-l~~~---- 280 (347)
T 4fmz_A 217 VAN--MTRLNSLKIGNNKITDL-SPLANLSQLTWLEIGTNQ-ISDIN-AVK------DLTKLKMLNVGSNQ-ISDI---- 280 (347)
T ss_dssp GGG--CTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC-CCCCG-GGT------TCTTCCEEECCSSC-CCCC----
T ss_pred hhc--CCcCCEEEccCCccCCC-cchhcCCCCCEEECCCCc-cCCCh-hHh------cCCCcCEEEccCCc-cCCC----
Confidence 332 77888888888876543 347788888888888864 33332 122 27888888888742 1111
Q ss_pred CCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCccc
Q 047598 876 KGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSF 955 (1112)
Q Consensus 876 ~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~ 955 (1112)
..+..+++|+.|++++| .+++..| ..+..+++|++|++++|+.....
T Consensus 281 ------~~~~~l~~L~~L~L~~n-~l~~~~~--------------------------~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 281 ------SVLNNLSQLNSLFLNNN-QLGNEDM--------------------------EVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp ------GGGGGCTTCSEEECCSS-CCCGGGH--------------------------HHHHTCTTCSEEECCSSSCCCCG
T ss_pred ------hhhcCCCCCCEEECcCC-cCCCcCh--------------------------hHhhccccCCEEEccCCcccccc
Confidence 23467888999999884 6653222 23445666777777777543333
Q ss_pred CCCCCCCCCCeEEEcCC
Q 047598 956 PEEGFPTNLASLVIGGD 972 (1112)
Q Consensus 956 ~~~~~~~~L~~L~l~~~ 972 (1112)
| ...+++|+.|++++|
T Consensus 328 ~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 328 P-LASLSKMDSADFANQ 343 (347)
T ss_dssp G-GGGCTTCSEESSSCC
T ss_pred C-hhhhhccceeehhhh
Confidence 3 445667777777776
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=7.2e-21 Score=212.26 Aligned_cols=288 Identities=17% Similarity=0.203 Sum_probs=158.7
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCccc-CccccCCccccEEee
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKL-PSKMRNLINLHHLDI 669 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L 669 (1112)
..+++++++++.+..+|..+. ++|++|+|++|.+..+|. .|+++++|++|+|++| .+..+ |..+..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 367888888888888876654 578888888888887765 5788888888888887 44444 777888888888888
Q ss_pred cCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEE
Q 047598 670 KGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLE 749 (1112)
Q Consensus 670 ~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 749 (1112)
++|. +..+|..+. ++|++|++.++..... ....+.++++|+.|+++
T Consensus 108 s~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~-------------------------------~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 108 SKNQ-LKELPEKMP--KTLQELRVHENEITKV-------------------------------RKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CSSC-CSBCCSSCC--TTCCEEECCSSCCCBB-------------------------------CHHHHTTCTTCCEEECC
T ss_pred CCCc-CCccChhhc--ccccEEECCCCccccc-------------------------------CHhHhcCCccccEEECC
Confidence 8887 566776554 5677666554432221 11223445566666665
Q ss_pred eCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcc
Q 047598 750 WGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLR 828 (1112)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~ 828 (1112)
.+.... .......+..+++|+.|++.++....+|..+ +++|++|++++|.+....+ .++.+++|+
T Consensus 154 ~n~l~~----------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 219 (330)
T 1xku_A 154 TNPLKS----------SGIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLA 219 (330)
T ss_dssp SSCCCG----------GGBCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred CCcCCc----------cCcChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 554310 0001112223344445555555444444433 2455555555555443322 445555555
Q ss_pred eEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCC
Q 047598 829 ELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPEL 908 (1112)
Q Consensus 829 ~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~ 908 (1112)
.|++++|.. ..++. ..+..+++|++|++++ |+++
T Consensus 220 ~L~Ls~n~l-~~~~~--------------------------------------~~~~~l~~L~~L~L~~-N~l~------ 253 (330)
T 1xku_A 220 KLGLSFNSI-SAVDN--------------------------------------GSLANTPHLRELHLNN-NKLV------ 253 (330)
T ss_dssp EEECCSSCC-CEECT--------------------------------------TTGGGSTTCCEEECCS-SCCS------
T ss_pred EEECCCCcC-ceeCh--------------------------------------hhccCCCCCCEEECCC-CcCc------
Confidence 555555432 11111 1223445555555555 3443
Q ss_pred CCCcceeEEeEEEEeccCCcccCcccCCCCCCcCEEEEecCCCCcccCCCCC--------CCCCCeEEEcCCcccccccc
Q 047598 909 LPSLETLVVATFVIANCEKLEALPNDMHRLNFLEHLRIGQCPSILSFPEEGF--------PTNLASLVIGGDVKMYKGLI 980 (1112)
Q Consensus 909 ~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~ 980 (1112)
.+|..+..+++|++|++++|+ ++.++...+ .++|+.|++.+|+.......
T Consensus 254 ---------------------~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~ 311 (330)
T 1xku_A 254 ---------------------KVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311 (330)
T ss_dssp ---------------------SCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred ---------------------cCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccC
Confidence 223334445555666666553 333332211 24556666666643333344
Q ss_pred cccCCCCCCcCEEEEccc
Q 047598 981 QWGLHRLTALRRLEIDGC 998 (1112)
Q Consensus 981 ~~~~~~l~~L~~L~l~~n 998 (1112)
+..+..+++|+.+++++|
T Consensus 312 ~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGGTTCCCGGGEEC---
T ss_pred ccccccccceeEEEeccc
Confidence 566777888888888876
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.2e-20 Score=210.66 Aligned_cols=192 Identities=17% Similarity=0.123 Sum_probs=122.3
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEcccccccccc-ccccCCCCCcEEeecCCCCCccc-CccccCCccccEEee
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLP-ESTNSLLNLEILILRNCSRLKKL-PSKMRNLINLHHLDI 669 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L 669 (1112)
..+++++++++.+..+|..+. ++|++|+|++|.+..+| ..|+++++|++|++++| .+..+ |..++++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 367888888888888887664 58888888888888774 46888888888888887 45544 667888888888888
Q ss_pred cCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEE
Q 047598 670 KGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLE 749 (1112)
Q Consensus 670 ~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 749 (1112)
++|. +..+|..+. ++|++|++.++.....+ ...+.++++|+.|+++
T Consensus 110 ~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~-------------------------------~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 110 SKNH-LVEIPPNLP--SSLVELRIHDNRIRKVP-------------------------------KGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CSSC-CCSCCSSCC--TTCCEEECCSSCCCCCC-------------------------------SGGGSSCSSCCEEECC
T ss_pred CCCc-CCccCcccc--ccCCEEECCCCccCccC-------------------------------HhHhCCCccCCEEECC
Confidence 8887 567777655 67777776655433221 1123445566666666
Q ss_pred eCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcc
Q 047598 750 WGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLR 828 (1112)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~ 828 (1112)
++.... .......+... +|+.|+++++....+|..+ .++|++|++++|.+....+ .+..+++|+
T Consensus 156 ~n~l~~----------~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 220 (332)
T 2ft3_A 156 GNPLEN----------SGFEPGAFDGL-KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLY 220 (332)
T ss_dssp SCCCBG----------GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCS
T ss_pred CCcccc----------CCCCcccccCC-ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 554310 00111122222 5566666666665565544 3566666666666554433 466666666
Q ss_pred eEEecCC
Q 047598 829 ELTIQGL 835 (1112)
Q Consensus 829 ~L~L~~~ 835 (1112)
.|++++|
T Consensus 221 ~L~L~~N 227 (332)
T 2ft3_A 221 RLGLGHN 227 (332)
T ss_dssp CCBCCSS
T ss_pred EEECCCC
Confidence 6666665
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=5.4e-21 Score=211.90 Aligned_cols=92 Identities=22% Similarity=0.295 Sum_probs=84.5
Q ss_pred CCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeec
Q 047598 591 FKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIK 670 (1112)
Q Consensus 591 ~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~ 670 (1112)
...++.|+|++|.+..+|..++.+++|++|+|++|.+..+|..++++++|++|+|++| .+..+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 4789999999999999999999999999999999999999999999999999999998 677999999999999999999
Q ss_pred CCCccccCCCCCC
Q 047598 671 GANLLREMPLGMK 683 (1112)
Q Consensus 671 ~~~~l~~lp~~i~ 683 (1112)
+|..+..+|..++
T Consensus 159 ~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 159 ACPELTELPEPLA 171 (328)
T ss_dssp EETTCCCCCSCSE
T ss_pred CCCCccccChhHh
Confidence 9887888887554
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.1e-19 Score=201.37 Aligned_cols=208 Identities=21% Similarity=0.271 Sum_probs=140.9
Q ss_pred CCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccC
Q 047598 613 DLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLS 692 (1112)
Q Consensus 613 ~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 692 (1112)
...++++|+|++|.+..+|..++++++|++|+|++| .+..+|..++++++|++|++++|. +..+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 357899999999999999999999999999999998 677999999999999999999998 568999999999999999
Q ss_pred eeeeccC-CcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhcc
Q 047598 693 NFIVGKG-EAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLD 771 (1112)
Q Consensus 693 ~~~~~~~-~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 771 (1112)
+.++... ..|..+... . ....+.++++|+.|++
T Consensus 157 L~~n~~~~~~p~~~~~~---~--------------------~~~~~~~l~~L~~L~L----------------------- 190 (328)
T 4fcg_A 157 IRACPELTELPEPLAST---D--------------------ASGEHQGLVNLQSLRL----------------------- 190 (328)
T ss_dssp EEEETTCCCCCSCSEEE---C---------------------CCCEEESTTCCEEEE-----------------------
T ss_pred CCCCCCccccChhHhhc---c--------------------chhhhccCCCCCEEEC-----------------------
Confidence 9886532 222222110 0 0011233344444444
Q ss_pred CCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceecCccccCCCCc
Q 047598 772 KLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFS 851 (1112)
Q Consensus 772 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~ 851 (1112)
++|....+|.++.. +++|++|+|++|.+....+.++.+++|+.|++++|+....++..+..
T Consensus 191 -------------~~n~l~~lp~~l~~--l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~---- 251 (328)
T 4fcg_A 191 -------------EWTGIRSLPASIAN--LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG---- 251 (328)
T ss_dssp -------------EEECCCCCCGGGGG--CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC----
T ss_pred -------------cCCCcCcchHhhcC--CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcC----
Confidence 44444556666654 77777777777776654446777777777777777666655544333
Q ss_pred ccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecC
Q 047598 852 KPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMEC 898 (1112)
Q Consensus 852 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 898 (1112)
+++|+.|+++++..+. ..+..+..+++|++|++++|
T Consensus 252 --l~~L~~L~L~~n~~~~---------~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 252 --RAPLKRLILKDCSNLL---------TLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp --CCCCCEEECTTCTTCC---------BCCTTGGGCTTCCEEECTTC
T ss_pred --CCCCCEEECCCCCchh---------hcchhhhcCCCCCEEeCCCC
Confidence 5555555555532221 22223345556666666654
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=2.1e-20 Score=205.93 Aligned_cols=113 Identities=16% Similarity=0.211 Sum_probs=73.7
Q ss_pred cccccCCcccEEEecc-cccc-cccccccCCCcCcEEEccccccc-cccccccCCCCCcEEeecCCCCCcccCccccCCc
Q 047598 586 DLLPKFKRLRVLSLQR-YYIG-ELLVSFEDLKLLRYLNLADTMIR-TLPESTNSLLNLEILILRNCSRLKKLPSKMRNLI 662 (1112)
Q Consensus 586 ~~~~~~~~L~~L~L~~-~~~~-~lp~~~~~l~~Lr~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 662 (1112)
..+..+++|++|++++ |.+. .+|..|+.+++|++|+|++|.+. .+|..++++++|++|++++|.....+|..+..++
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 3456667777777763 5553 56666777777777777777666 6666677777777777777633336666677777
Q ss_pred cccEEeecCCCccccCCCCCCCCC-CCCccCeeeecc
Q 047598 663 NLHHLDIKGANLLREMPLGMKELK-NLRTLSNFIVGK 698 (1112)
Q Consensus 663 ~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~~~~~~~ 698 (1112)
+|++|++++|.+...+|..++.+. +|+.|++..+..
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 777777777764446666666666 666666655543
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=1.9e-20 Score=206.28 Aligned_cols=250 Identities=13% Similarity=0.139 Sum_probs=180.0
Q ss_pred CcccEEEecccccc---cccccccCCCcCcEEEccc-cccc-cccccccCCCCCcEEeecCCCCCcccCccccCCccccE
Q 047598 592 KRLRVLSLQRYYIG---ELLVSFEDLKLLRYLNLAD-TMIR-TLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHH 666 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~---~lp~~~~~l~~Lr~L~Ls~-n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 666 (1112)
..++.|+|++|.+. .+|..|..+++|++|+|++ |.+. .+|..|+++++|++|+|++|.....+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999986 6899999999999999995 8777 78999999999999999998544589999999999999
Q ss_pred EeecCCCccccCCCCCCCCCCCCccCeeeeccC-CcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCc
Q 047598 667 LDIKGANLLREMPLGMKELKNLRTLSNFIVGKG-EAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKT 745 (1112)
Q Consensus 667 L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~-~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 745 (1112)
|++++|.+...+|..++.+++|++|++.++... ..|..+..+. ++|+.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-------------------------------~~L~~ 178 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-------------------------------KLFTS 178 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-------------------------------TTCCE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-------------------------------hcCcE
Confidence 999999966688999999999999998877654 3333333333 14444
Q ss_pred eEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCC-CCCccCCCCCCceeEEEEcCcCCCCCCCCCCCC
Q 047598 746 LSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGAR-FPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLL 824 (1112)
Q Consensus 746 L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 824 (1112)
|+++++.... .....+.... |+.|++++|.... .|..+.. +++|+.|+|++|.+...++.+..+
T Consensus 179 L~L~~N~l~~------------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~l 243 (313)
T 1ogq_A 179 MTISRNRLTG------------KIPPTFANLN-LAFVDLSRNMLEGDASVLFGS--DKNTQKIHLAKNSLAFDLGKVGLS 243 (313)
T ss_dssp EECCSSEEEE------------ECCGGGGGCC-CSEEECCSSEEEECCGGGCCT--TSCCSEEECCSSEECCBGGGCCCC
T ss_pred EECcCCeeec------------cCChHHhCCc-ccEEECcCCcccCcCCHHHhc--CCCCCEEECCCCceeeecCccccc
Confidence 5554443210 0011111122 6666666665442 3444544 788888888888877777777788
Q ss_pred CCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCC
Q 047598 825 SSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSG 903 (1112)
Q Consensus 825 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~ 903 (1112)
++|++|++++|.....+|..+.. +++|+.|++++. .....+|.. ..+++|+.|++++++.+.|
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N---------~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQGLTQ------LKFLHSLNVSFN---------NLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGGG------CTTCCEEECCSS---------EEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CCCCEEECcCCcccCcCChHHhc------CcCCCEEECcCC---------cccccCCCC-ccccccChHHhcCCCCccC
Confidence 88888888887655566655444 788888888873 222223332 6788888888888655664
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=1.3e-21 Score=238.04 Aligned_cols=384 Identities=12% Similarity=0.064 Sum_probs=207.6
Q ss_pred hhccCCCcceeccccccCCccc-------ccccccccccccccCCcccEEEeccccccc-ccccccC-CC-cCcEEEccc
Q 047598 555 VFYQTENLRTFLPIRIRGGTIC-------SYITGIVLSDLLPKFKRLRVLSLQRYYIGE-LLVSFED-LK-LLRYLNLAD 624 (1112)
Q Consensus 555 ~~~~~~~lr~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-lp~~~~~-l~-~Lr~L~Ls~ 624 (1112)
.+..+++|++|.+.+....... ...........+..+++|++|+|++|.++. .+..+.. ++ +|++|+|++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 3456777888877553211000 000011122223467888888888887643 2333444 33 488888887
Q ss_pred cc-cc--cccccccCCCCCcEEeecCCCCCcc----cCccccCCccccEEeecCCCcc----ccCCCCCCCCCCCCccCe
Q 047598 625 TM-IR--TLPESTNSLLNLEILILRNCSRLKK----LPSKMRNLINLHHLDIKGANLL----REMPLGMKELKNLRTLSN 693 (1112)
Q Consensus 625 n~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~----lp~~i~~L~~L~~L~L~~~~~l----~~lp~~i~~l~~L~~L~~ 693 (1112)
|. +. .++..+..+++|++|+|++|..... ++..+..+++|++|++++|... ..++..+.++++|++|++
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L 227 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence 75 22 2333345778888888888742222 3333456788888888887732 123333445666666655
Q ss_pred eeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCC
Q 047598 694 FIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKL 773 (1112)
Q Consensus 694 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l 773 (1112)
..+.... .+..+.++++|+.|.+........ .......+
T Consensus 228 ~~~~~~~--------------------------------l~~~~~~~~~L~~L~l~~~~~~~~---------~~~~~~~l 266 (592)
T 3ogk_B 228 GDFEILE--------------------------------LVGFFKAAANLEEFCGGSLNEDIG---------MPEKYMNL 266 (592)
T ss_dssp SSCBGGG--------------------------------GHHHHHHCTTCCEEEECBCCCCTT---------CTTSSSCC
T ss_pred cCccHHH--------------------------------HHHHHhhhhHHHhhcccccccccc---------hHHHHHHh
Confidence 4432221 122344556777777764221100 11233445
Q ss_pred CCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCC-CC-CCCCCCCcceEEecCCCCceecCccccCCCCc
Q 047598 774 QPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTS-LP-SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFS 851 (1112)
Q Consensus 774 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~ 851 (1112)
..+++|+.|.+.++....+|..+.. +++|++|+|++|.+... ++ .++.+++|+.|+++++-.-..++. + .
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~--~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~-~-----~ 338 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPF--AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-L-----A 338 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGG--GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH-H-----H
T ss_pred hccccccccCccccchhHHHHHHhh--cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH-H-----H
Confidence 5567788888877766667776654 78899999998874322 11 357788899998884311111111 1 1
Q ss_pred ccCcccceeecCC----------CCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCC----CCCcceeEE
Q 047598 852 KPFQSLEILSFEN----------LPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPEL----LPSLETLVV 917 (1112)
Q Consensus 852 ~~~~~L~~L~l~~----------~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~----~~~L~~L~~ 917 (1112)
..+++|+.|++++ +..+... ........+|+|++|++ +|+++++..+.. +++|+.|.+
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-------~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQR-------GLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRL 410 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHH-------HHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred HhCCCCCEEEeecCccccccccccCccCHH-------HHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEE
Confidence 1267888888884 3322211 11111245788888888 447777543332 334444432
Q ss_pred eEEEEe-ccCCcccCc------ccCCCCCCcCEEEEecCCC-Ccc-cCC-C-CCCCCCCeEEEcCCcccccccccccCCC
Q 047598 918 ATFVIA-NCEKLEALP------NDMHRLNFLEHLRIGQCPS-ILS-FPE-E-GFPTNLASLVIGGDVKMYKGLIQWGLHR 986 (1112)
Q Consensus 918 ~~L~~~-~~~~l~~lp------~~l~~l~~L~~L~L~~~~~-l~~-~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 986 (1112)
... .|+.+...| ..+..+++|+.|++++|.. ++. ... . ..+++|+.|++++|. +.....+..+..
T Consensus 411 ---~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~ 486 (592)
T 3ogk_B 411 ---VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRG 486 (592)
T ss_dssp ---EECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTC
T ss_pred ---eecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhc
Confidence 211 244554432 2244577777777776542 111 110 1 235677777777763 111123334566
Q ss_pred CCCcCEEEEcccC
Q 047598 987 LTALRRLEIDGCH 999 (1112)
Q Consensus 987 l~~L~~L~l~~n~ 999 (1112)
+++|++|+|++|.
T Consensus 487 ~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 487 CPNLQKLEMRGCC 499 (592)
T ss_dssp CTTCCEEEEESCC
T ss_pred CcccCeeeccCCC
Confidence 6777777777764
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=4.4e-18 Score=202.78 Aligned_cols=92 Identities=22% Similarity=0.175 Sum_probs=74.6
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecC
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKG 671 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 671 (1112)
..+++|++++|.++.+|..+. ++|++|+|++|.++.+|. .+++|++|+|++| .+..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 358899999999999998776 799999999999999887 5789999999998 6888887 678999999999
Q ss_pred CCccccCCCCCCCCCCCCccCeeee
Q 047598 672 ANLLREMPLGMKELKNLRTLSNFIV 696 (1112)
Q Consensus 672 ~~~l~~lp~~i~~l~~L~~L~~~~~ 696 (1112)
|. +..+|. .+++|+.|++.+|
T Consensus 111 N~-l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 111 NP-LTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp CC-CCCCCC---CCTTCCEEECCSS
T ss_pred Cc-CCCCCC---CCCCcCEEECCCC
Confidence 87 566665 4556666665544
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=8.8e-19 Score=195.30 Aligned_cols=103 Identities=26% Similarity=0.320 Sum_probs=80.8
Q ss_pred CcccEEEecccccccccc-cccCCCcCcEEEccccccccc-cccccCCCCCcEEeecCCCCCcccCccccCCccccEEee
Q 047598 592 KRLRVLSLQRYYIGELLV-SFEDLKLLRYLNLADTMIRTL-PESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDI 669 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~-~~~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 669 (1112)
+.|++|+|++|.+..++. .|.++++|++|+|++|.+..+ |..++.+++|++|++++| .+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEEC
Confidence 578888888888887764 688888888888888888876 677888888888888887 6777887665 68888888
Q ss_pred cCCCccccCCC-CCCCCCCCCccCeeeecc
Q 047598 670 KGANLLREMPL-GMKELKNLRTLSNFIVGK 698 (1112)
Q Consensus 670 ~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~ 698 (1112)
++|. +..++. .+..+++|++|++..+..
T Consensus 129 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 129 HENE-ITKVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp CSSC-CCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred CCCc-ccccCHhHhcCCccccEEECCCCcC
Confidence 8887 444443 477888888888776654
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=9.1e-19 Score=195.27 Aligned_cols=214 Identities=21% Similarity=0.227 Sum_probs=113.8
Q ss_pred CcccEEEeccccccccc-ccccCCCcCcEEEccccccccc-cccccCCCCCcEEeecCCCCCcccCccccCCccccEEee
Q 047598 592 KRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTL-PESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDI 669 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 669 (1112)
+.|++|++++|.+..++ ..|.++++|++|+|++|.+..+ |..|+++++|++|++++| .+..+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEEC
Confidence 46777777777776664 4577777777777777777655 556777777777777776 5666666554 67777777
Q ss_pred cCCCccccCCCC-CCCCCCCCccCeeeeccCC---cccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCc
Q 047598 670 KGANLLREMPLG-MKELKNLRTLSNFIVGKGE---AISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKT 745 (1112)
Q Consensus 670 ~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~---~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 745 (1112)
++|. +..+|.. ++.+++|++|++.++.... .+..+..+ +|+.+. +. .+.+.. .+..+ .++|+.
T Consensus 131 ~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~----l~----~n~l~~-l~~~~--~~~L~~ 197 (332)
T 2ft3_A 131 HDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR----IS----EAKLTG-IPKDL--PETLNE 197 (332)
T ss_dssp CSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB----CC----SSBCSS-CCSSS--CSSCSC
T ss_pred CCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE----Cc----CCCCCc-cCccc--cCCCCE
Confidence 7776 4445543 6677777777766655432 11222222 222221 00 000000 00111 135555
Q ss_pred eEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCC-ccCCCCCCceeEEEEcCcCCCCCCCCCCCC
Q 047598 746 LSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPS-WLGDPLFSKMEVLKLENCWNCTSLPSLGLL 824 (1112)
Q Consensus 746 L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 824 (1112)
|+++++... ......+..+++|+.|++++|....++. ++.. +++|+.|+|++|.+....+.++.+
T Consensus 198 L~l~~n~i~------------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~lp~~l~~l 263 (332)
T 2ft3_A 198 LHLDHNKIQ------------AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--LPTLRELHLDNNKLSRVPAGLPDL 263 (332)
T ss_dssp CBCCSSCCC------------CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--CTTCCEEECCSSCCCBCCTTGGGC
T ss_pred EECCCCcCC------------ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--CCCCCEEECCCCcCeecChhhhcC
Confidence 555554431 1111233344555555555555544443 3332 556666666666554222245556
Q ss_pred CCcceEEecCC
Q 047598 825 SSLRELTIQGL 835 (1112)
Q Consensus 825 ~~L~~L~L~~~ 835 (1112)
++|+.|++++|
T Consensus 264 ~~L~~L~l~~N 274 (332)
T 2ft3_A 264 KLLQVVYLHTN 274 (332)
T ss_dssp TTCCEEECCSS
T ss_pred ccCCEEECCCC
Confidence 66666666654
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=6.6e-22 Score=232.42 Aligned_cols=67 Identities=16% Similarity=0.060 Sum_probs=41.7
Q ss_pred CcccCCCCCCcCEEEEecCCCCcccCCC------CCCCCCCeEEEcCCcccccc----cccccCCCCCCcCEEEEcccC
Q 047598 931 LPNDMHRLNFLEHLRIGQCPSILSFPEE------GFPTNLASLVIGGDVKMYKG----LIQWGLHRLTALRRLEIDGCH 999 (1112)
Q Consensus 931 lp~~l~~l~~L~~L~L~~~~~l~~~~~~------~~~~~L~~L~l~~~~~~~~~----~~~~~~~~l~~L~~L~l~~n~ 999 (1112)
++..+..+++|++|++++|......+.. ...++|+.|++++|. ... ..+..+..+++|++|++++|.
T Consensus 333 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD--VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC--CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC--CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 3445566778888888888433221110 114678888888883 222 345556677888888888875
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=3.9e-17 Score=190.40 Aligned_cols=242 Identities=18% Similarity=0.229 Sum_probs=176.6
Q ss_pred ceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccc
Q 047598 780 KNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLE 858 (1112)
Q Consensus 780 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~ 858 (1112)
..+...+.....+|..+ .++|+.|+|++|.+....+ .++.+++|+.|+|++|. +..++...+.. +++|+
T Consensus 57 ~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~-----l~~L~ 126 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNG-----LASLN 126 (452)
T ss_dssp CEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTT-----CTTCC
T ss_pred cEEEECCCCcCccCCCC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccC-----cccCC
Confidence 45555566666777655 4689999999998776554 68899999999999875 44444332222 88999
Q ss_pred eeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcc-cCCC
Q 047598 859 ILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPN-DMHR 937 (1112)
Q Consensus 859 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~-~l~~ 937 (1112)
.|++++. ......+..+..+++|++|++++ |+++...+..+..+.+|+ .|.+++|..+..+|. .+..
T Consensus 127 ~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~--~L~l~~~~~l~~i~~~~~~~ 194 (452)
T 3zyi_A 127 TLELFDN---------WLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLM--RLDLGELKKLEYISEGAFEG 194 (452)
T ss_dssp EEECCSS---------CCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCC--EEECCCCTTCCEECTTTTTT
T ss_pred EEECCCC---------cCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCccc--EEeCCCCCCccccChhhccC
Confidence 9999872 23333344567789999999999 678854445666677765 355677777777765 4778
Q ss_pred CCCcCEEEEecCCCCcccCCCCCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCcccccccCCC
Q 047598 938 LNFLEHLRIGQCPSILSFPEEGFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPS 1017 (1112)
Q Consensus 938 l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~ 1017 (1112)
+++|+.|++++| .+..+|....+++|+.|++++| .+....+..+.++++|+.|++++|. +..++...
T Consensus 195 l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~------- 261 (452)
T 3zyi_A 195 LFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGN--HFPEIRPGSFHGLSSLKKLWVMNSQ---VSLIERNA------- 261 (452)
T ss_dssp CTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTS--CCSEECGGGGTTCTTCCEEECTTSC---CCEECTTT-------
T ss_pred CCCCCEEECCCC-cccccccccccccccEEECcCC--cCcccCcccccCccCCCEEEeCCCc---CceECHHH-------
Confidence 999999999999 4556676677889999999998 4556667788999999999999986 43333222
Q ss_pred CccEEEecCCCCCCcCCCCCCCCeEEeecCCCCCcCCC--CCCCCCccEEEEccCcc
Q 047598 1018 SLTHLTIAGFKKLKKLSLMTSLEYLWIKNCPNLASFPE--LGLPSSLTQLYIDHCPL 1072 (1112)
Q Consensus 1018 sL~~L~l~~~~~L~~l~~l~~L~~L~ls~c~~l~~lp~--~~~~~~L~~L~l~~c~~ 1072 (1112)
+..+++|+.|+|++|. ++.+|. +..+++|+.|++++||.
T Consensus 262 ---------------~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 262 ---------------FDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ---------------TTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ---------------hcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCCc
Confidence 2347899999999994 455553 66788999999999874
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=7.9e-18 Score=189.42 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=72.4
Q ss_pred cCCcccEEEecccccccccccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCccc-CccccCCccccEE
Q 047598 590 KFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKL-PSKMRNLINLHHL 667 (1112)
Q Consensus 590 ~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L 667 (1112)
.|+...+.+++++.++.+|..+. ++|++|++++|.+..+|. .+.++++|++|++++| .+..+ |..+.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEE
Confidence 34555668888888988888765 489999999999888876 6888999999999988 55555 4568888889999
Q ss_pred eecCCCccccCCCC-CCCCCCCCccC
Q 047598 668 DIKGANLLREMPLG-MKELKNLRTLS 692 (1112)
Q Consensus 668 ~L~~~~~l~~lp~~-i~~l~~L~~L~ 692 (1112)
++++|. +..+|.. ++.+++|++|+
T Consensus 106 ~Ls~n~-l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 106 DLSYNY-LSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp ECCSSC-CSSCCHHHHTTCTTCSEEE
T ss_pred ECCCCc-CCcCCHhHhCCCccCCEEE
Confidence 888887 4444433 34444444433
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=4e-17 Score=189.53 Aligned_cols=243 Identities=14% Similarity=0.182 Sum_probs=180.5
Q ss_pred CceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcceEEecCCCCceecCccccCCCCcccCccc
Q 047598 779 IKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSL 857 (1112)
Q Consensus 779 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L 857 (1112)
...+...+.....+|..+ .++++.|+|++|.+....+ .++++++|+.|+|++|. +..++...+.. +++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~-----l~~L 114 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNG-----LANL 114 (440)
T ss_dssp SCEEECCSCCCSSCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTT-----CSSC
T ss_pred CCEEEeCCCCcCcCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccC-----CccC
Confidence 345666666777788765 4689999999998766544 78899999999999875 44554433332 8999
Q ss_pred ceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcc-cCC
Q 047598 858 EILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPN-DMH 936 (1112)
Q Consensus 858 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~-~l~ 936 (1112)
+.|++++. ......+..+..+++|++|++++ |.++...+..+..+.+|+ .|.++++..+..++. .+.
T Consensus 115 ~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~--~L~l~~~~~l~~i~~~~~~ 182 (440)
T 3zyj_A 115 NTLELFDN---------RLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLR--RLDLGELKRLSYISEGAFE 182 (440)
T ss_dssp CEEECCSS---------CCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCC--EEECCCCTTCCEECTTTTT
T ss_pred CEEECCCC---------cCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccC--EeCCCCCCCcceeCcchhh
Confidence 99999882 23333344567889999999999 688855555677777775 345667777777765 578
Q ss_pred CCCCcCEEEEecCCCCcccCCCCCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCcccccccCC
Q 047598 937 RLNFLEHLRIGQCPSILSFPEEGFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLP 1016 (1112)
Q Consensus 937 ~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~ 1016 (1112)
.+++|++|++++| .+..+|....+++|+.|+|++| .+....+..+.++++|+.|++++|. +..++...
T Consensus 183 ~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~------ 250 (440)
T 3zyj_A 183 GLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN--HLSAIRPGSFQGLMHLQKLWMIQSQ---IQVIERNA------ 250 (440)
T ss_dssp TCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCC---CCEECTTS------
T ss_pred cccccCeecCCCC-cCccccccCCCcccCEEECCCC--ccCccChhhhccCccCCEEECCCCc---eeEEChhh------
Confidence 8999999999999 5567777777889999999999 4556667788999999999999986 44443322
Q ss_pred CCccEEEecCCCCCCcCCCCCCCCeEEeecCCCCCcCCC--CCCCCCccEEEEccCcc
Q 047598 1017 SSLTHLTIAGFKKLKKLSLMTSLEYLWIKNCPNLASFPE--LGLPSSLTQLYIDHCPL 1072 (1112)
Q Consensus 1017 ~sL~~L~l~~~~~L~~l~~l~~L~~L~ls~c~~l~~lp~--~~~~~~L~~L~l~~c~~ 1072 (1112)
+..+++|+.|+|++|. ++.+|. +..+++|+.|++++||.
T Consensus 251 ----------------~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 251 ----------------FDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ----------------STTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ----------------hcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCCc
Confidence 2347889999999994 445553 66788999999999885
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=6.9e-17 Score=192.47 Aligned_cols=92 Identities=23% Similarity=0.179 Sum_probs=77.3
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecC
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKG 671 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 671 (1112)
++|++|+|++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|+|++| .+..+|. .+++|++|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCC
Confidence 789999999999999887 57899999999999999987 6899999999998 7888887 678899999999
Q ss_pred CCccccCCCCCCCCCCCCccCeeeec
Q 047598 672 ANLLREMPLGMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 672 ~~~l~~lp~~i~~l~~L~~L~~~~~~ 697 (1112)
|. +..+|.. +++|++|++.+|.
T Consensus 131 N~-l~~lp~~---l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 131 NQ-LTSLPVL---PPGLQELSVSDNQ 152 (622)
T ss_dssp SC-CSCCCCC---CTTCCEEECCSSC
T ss_pred CC-CCcCCCC---CCCCCEEECcCCc
Confidence 98 6677764 3667777665544
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=2.7e-18 Score=193.21 Aligned_cols=198 Identities=19% Similarity=0.135 Sum_probs=136.5
Q ss_pred CcccEEEecccccccccc-cccCCCcCcEEEcccccccccc-ccccCCCCCcEEeecCCCCCcccCcc-ccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGELLV-SFEDLKLLRYLNLADTMIRTLP-ESTNSLLNLEILILRNCSRLKKLPSK-MRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~-~~~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 668 (1112)
++|++|++++|.+..+|. .|.++++|++|+|++|.+..++ ..|+++++|++|++++| .+..+|.. +..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence 589999999999998886 7999999999999999999775 56999999999999998 77788876 89999999999
Q ss_pred ecCCCccccCCC--CCCCCCCCCccCeeeec-cCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCc
Q 047598 669 IKGANLLREMPL--GMKELKNLRTLSNFIVG-KGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKT 745 (1112)
Q Consensus 669 L~~~~~l~~lp~--~i~~l~~L~~L~~~~~~-~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 745 (1112)
+++|. +..+|. .++.+++|++|++.++. ....+ +..+.++++|+.
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------------------~~~~~~l~~L~~ 178 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-------------------------------RKDFAGLTFLEE 178 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-------------------------------TTTTTTCCEEEE
T ss_pred CCCCC-CcccCchhhhccCCCCcEEECCCCccccccC-------------------------------HHHccCCCCCCE
Confidence 99998 667876 58899999999988763 22110 112344456666
Q ss_pred eEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC----CC
Q 047598 746 LSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP----SL 821 (1112)
Q Consensus 746 L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~----~l 821 (1112)
|+++++... ......+..+++|+.|+++++....+|..+.. .+++|+.|++++|.+....+ ..
T Consensus 179 L~l~~n~l~------------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 179 LEIDASDLQ------------SYEPKSLKSIQNVSHLILHMKQHILLLEIFVD-VTSSVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp EEEEETTCC------------EECTTTTTTCSEEEEEEEECSCSTTHHHHHHH-HTTTEEEEEEESCBCTTCCCC-----
T ss_pred EECCCCCcC------------ccCHHHHhccccCCeecCCCCccccchhhhhh-hcccccEEECCCCccccccccccccc
Confidence 666665431 11122333445555666665555444433221 15667777777766543221 22
Q ss_pred CCCCCcceEEecCC
Q 047598 822 GLLSSLRELTIQGL 835 (1112)
Q Consensus 822 ~~l~~L~~L~L~~~ 835 (1112)
...+.++.++++++
T Consensus 246 ~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 246 ETNSLIKKFTFRNV 259 (353)
T ss_dssp -CCCCCCEEEEESC
T ss_pred cccchhhccccccc
Confidence 33455666666654
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=4.5e-18 Score=187.37 Aligned_cols=103 Identities=24% Similarity=0.241 Sum_probs=74.3
Q ss_pred CcccEEEeccccccccccc-ccCCCcCcEEEccccccccc---cccccCCCCCcEEeecCCCCCcccCccccCCccccEE
Q 047598 592 KRLRVLSLQRYYIGELLVS-FEDLKLLRYLNLADTMIRTL---PESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHL 667 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~-~~~l~~Lr~L~Ls~n~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 667 (1112)
++|++|+|++|.+..+|.. |.++++|++|+|++|.+..+ |..+..+++|++|++++| .+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEE
Confidence 5778888888888777754 67788888888888877654 566667788888888887 666777777788888888
Q ss_pred eecCCCccccCCC--CCCCCCCCCccCeeee
Q 047598 668 DIKGANLLREMPL--GMKELKNLRTLSNFIV 696 (1112)
Q Consensus 668 ~L~~~~~l~~lp~--~i~~l~~L~~L~~~~~ 696 (1112)
++++|. +..+|. .+..+++|++|++.++
T Consensus 107 ~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 107 DFQHSN-LKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp ECTTSE-EESSTTTTTTTTCTTCCEEECTTS
T ss_pred ECCCCc-ccccccchhhhhccCCCEEECCCC
Confidence 888877 444443 4666666666665443
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=1.4e-20 Score=221.12 Aligned_cols=105 Identities=15% Similarity=0.110 Sum_probs=66.4
Q ss_pred CcccEEEeccccccccc--ccccCCCcCcEEEccccccc-----cccccccCCCCCcEEeecCCCCCcc-cCccc-cCCc
Q 047598 592 KRLRVLSLQRYYIGELL--VSFEDLKLLRYLNLADTMIR-----TLPESTNSLLNLEILILRNCSRLKK-LPSKM-RNLI 662 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp--~~~~~l~~Lr~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i-~~L~ 662 (1112)
+.|+.|+|++|.++..+ ..+..+++|++|+|++|.+. .+|..+..+++|++|+|++| .+.. .+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHh
Confidence 46777788777775543 22667777888888877766 45666777778888888777 3432 22222 2243
Q ss_pred ----cccEEeecCCCccc----cCCCCCCCCCCCCccCeeeec
Q 047598 663 ----NLHHLDIKGANLLR----EMPLGMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 663 ----~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~~~~~~ 697 (1112)
+|++|++++|.+.. .+|..+..+++|++|++.++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 57788887777431 345556667777777665543
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=1.8e-19 Score=219.07 Aligned_cols=397 Identities=15% Similarity=0.121 Sum_probs=234.2
Q ss_pred ccccccccCCcccEEEeccccc----cccccccc------------CCCcCcEEEcccccccc-ccccccCC--CCCcEE
Q 047598 583 VLSDLLPKFKRLRVLSLQRYYI----GELLVSFE------------DLKLLRYLNLADTMIRT-LPESTNSL--LNLEIL 643 (1112)
Q Consensus 583 ~~~~~~~~~~~L~~L~L~~~~~----~~lp~~~~------------~l~~Lr~L~Ls~n~i~~-lp~~i~~L--~~L~~L 643 (1112)
.+...+..+++|+.|+|+++.. ..+|..++ .+++|++|+|++|.+.. .+..+..+ .+|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3455677889999999988642 22333332 78899999999997763 34445553 459999
Q ss_pred eecCCCCCc--ccCccccCCccccEEeecCCCcccc----CCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCe
Q 047598 644 ILRNCSRLK--KLPSKMRNLINLHHLDIKGANLLRE----MPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGE 717 (1112)
Q Consensus 644 ~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~ 717 (1112)
+|++|..+. .++..+..+++|++|+|++|.+... ++..+..+++|++|++..+.....
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~---------------- 207 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI---------------- 207 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSC----------------
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCcc----------------
Confidence 999985332 2333345789999999999974222 222234566777776544332110
Q ss_pred eEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCC----CCC
Q 047598 718 LCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGA----RFP 793 (1112)
Q Consensus 718 l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~----~~p 793 (1112)
........+.++++|+.|+++.+.. ......+...++|+.|.+..+... ..+
T Consensus 208 -----------~~~~l~~~~~~~~~L~~L~L~~~~~-------------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 208 -----------SPKDLETIARNCRSLVSVKVGDFEI-------------LELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp -----------CHHHHHHHHHHCTTCCEEECSSCBG-------------GGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred -----------CHHHHHHHHhhCCCCcEEeccCccH-------------HHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence 0122333455678899999987643 111122344678999999865432 222
Q ss_pred CccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcceEEecCCCCceecCc-cccCCCCcccCcccceeecCCCCccccc
Q 047598 794 SWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLRELTIQGLTKLKSIGS-EVYGKGFSKPFQSLEILSFENLPEWEYW 871 (1112)
Q Consensus 794 ~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 871 (1112)
..+.. +++|+.|.++++.. ..+| .+..+++|++|+|++|. +..... .... .+++|+.|++++.
T Consensus 264 ~~l~~--~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~-----~~~~L~~L~L~~~------ 328 (592)
T 3ogk_B 264 MNLVF--PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQ-----KCPNLEVLETRNV------ 328 (592)
T ss_dssp SCCCC--CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHT-----TCTTCCEEEEEGG------
T ss_pred HHhhc--cccccccCccccch-hHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHH-----hCcCCCEEeccCc------
Confidence 33433 78999999988633 3344 56788999999999987 332211 1112 2899999998742
Q ss_pred ccccCCCCcCCcccCCCccceEeEec----------CCCCCCCCC----CCCCCcceeEEeEEEEeccCCcc-cCcccCC
Q 047598 872 DTNIKGNDHADRVEIFPRLHKLSIME----------CPKLSGKLP----ELLPSLETLVVATFVIANCEKLE-ALPNDMH 936 (1112)
Q Consensus 872 ~~~~~~~~~~~~~~~~p~L~~L~l~~----------c~~L~~~~p----~~~~~L~~L~~~~L~~~~~~~l~-~lp~~l~ 936 (1112)
......+.....+++|++|++++ |+.+++... ..+++|+.|. + +|..+. ..+..+.
T Consensus 329 ---~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~---l---~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 329 ---IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA---V---YVSDITNESLESIG 399 (592)
T ss_dssp ---GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE---E---EESCCCHHHHHHHH
T ss_pred ---cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE---e---ecCCccHHHHHHHH
Confidence 11111222235689999999996 888874311 2355666654 2 233332 2222333
Q ss_pred -CCCCcCEEEEec---CCCCcccCCC-------CCCCCCCeEEEcCCccccccc-ccccCCCCCCcCEEEEcccCCcccc
Q 047598 937 -RLNFLEHLRIGQ---CPSILSFPEE-------GFPTNLASLVIGGDVKMYKGL-IQWGLHRLTALRRLEIDGCHDDEVE 1004 (1112)
Q Consensus 937 -~l~~L~~L~L~~---~~~l~~~~~~-------~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~l~ 1004 (1112)
.+++|+.|++++ |+.++..|.. ..+++|+.|+++.|.+..... .......+++|+.|+|++|... -.
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~-~~ 478 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-DE 478 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS-HH
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC-HH
Confidence 388899999984 4455543321 237889999998765433222 2222345788899999887521 11
Q ss_pred ccCcccccccCCCCccEEEecCCCCCCcC------CCCCCCCeEEeecCC
Q 047598 1005 CFPNEEMGVMLPSSLTHLTIAGFKKLKKL------SLMTSLEYLWIKNCP 1048 (1112)
Q Consensus 1005 ~l~~~~~~~~~~~sL~~L~l~~~~~L~~l------~~l~~L~~L~ls~c~ 1048 (1112)
.++. ... ..++|+.|++++|. ++.- ..+++|++|+|++|+
T Consensus 479 ~~~~-~~~--~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 479 GLME-FSR--GCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHH-HHT--CCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHH-HHh--cCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 1111 011 12456666666665 3221 145666666666665
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=1.1e-16 Score=186.61 Aligned_cols=101 Identities=25% Similarity=0.314 Sum_probs=65.4
Q ss_pred CcccEEEecccccccc-cccccCCCcCcEEEcccccccccc-ccccCCCCCcEEeecCCCCCcccCcc-ccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGEL-LVSFEDLKLLRYLNLADTMIRTLP-ESTNSLLNLEILILRNCSRLKKLPSK-MRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 668 (1112)
++|++|+|++|.+..+ |..|.++++|++|+|++|.+..++ ..|.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 4677777777777665 356777777777777777776554 45667777777777776 45555543 66677777777
Q ss_pred ecCCCccccCCC-CCCCCCCCCccCee
Q 047598 669 IKGANLLREMPL-GMKELKNLRTLSNF 694 (1112)
Q Consensus 669 L~~~~~l~~lp~-~i~~l~~L~~L~~~ 694 (1112)
|++|. +..+|. .+.++++|+.|++.
T Consensus 154 L~~N~-l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 154 LRNNP-IESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECC
T ss_pred CCCCC-cceeCHhHHhcCCcccEEeCC
Confidence 77776 344443 35666666666543
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=185.03 Aligned_cols=101 Identities=29% Similarity=0.401 Sum_probs=63.6
Q ss_pred CcccEEEeccccccccc-ccccCCCcCcEEEcccccccccc-ccccCCCCCcEEeecCCCCCcccCc-cccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLP-ESTNSLLNLEILILRNCSRLKKLPS-KMRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 668 (1112)
+++++|+|++|.+..++ ..|.++++|++|+|++|.+..++ ..|.++++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 45667777777766654 55667777777777777766554 45666777777777776 4555554 466677777777
Q ss_pred ecCCCccccCCC-CCCCCCCCCccCee
Q 047598 669 IKGANLLREMPL-GMKELKNLRTLSNF 694 (1112)
Q Consensus 669 L~~~~~l~~lp~-~i~~l~~L~~L~~~ 694 (1112)
+++|. +..+|. .+..+++|+.|++.
T Consensus 143 L~~N~-i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 143 LRNNP-IESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECC
T ss_pred CCCCc-ccccCHHHhhhCcccCEeCCC
Confidence 77766 334433 35566666665543
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=2.1e-17 Score=179.83 Aligned_cols=96 Identities=24% Similarity=0.267 Sum_probs=57.4
Q ss_pred cEEEecccccccccccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCccc-CccccCCccccEEeecCC
Q 047598 595 RVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKL-PSKMRNLINLHHLDIKGA 672 (1112)
Q Consensus 595 ~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~ 672 (1112)
++++.+++.+..+|..+ .++|++|+|++|.+..+|. .+..+++|++|++++| .+..+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666666666544 3467777777777766653 4666777777777776 34443 556666777777777766
Q ss_pred CccccC-CCCCCCCCCCCccCe
Q 047598 673 NLLREM-PLGMKELKNLRTLSN 693 (1112)
Q Consensus 673 ~~l~~l-p~~i~~l~~L~~L~~ 693 (1112)
..+..+ |..+..+++|++|++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEEC
T ss_pred CCccccCHHHhcCCcCCCEEEC
Confidence 533333 333444555544443
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=4.7e-20 Score=224.38 Aligned_cols=263 Identities=18% Similarity=0.123 Sum_probs=133.2
Q ss_pred hhhccCCCcceeccccccCCcccccc-------cccccccccccCCcccEEEeccccccc-cccccc-CCCcCcEEEccc
Q 047598 554 EVFYQTENLRTFLPIRIRGGTICSYI-------TGIVLSDLLPKFKRLRVLSLQRYYIGE-LLVSFE-DLKLLRYLNLAD 624 (1112)
Q Consensus 554 ~~~~~~~~lr~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~L~~L~L~~~~~~~-lp~~~~-~l~~Lr~L~Ls~ 624 (1112)
..+..+++|+++.+.++......... ........+..+++|+.|+|++|.++. .+..+. .+++|++|+|++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 34556777888877654211000000 000112223466778888888877643 233343 577888888887
Q ss_pred c-cccc--ccccccCCCCCcEEeecCCCCCcc-----cCccccCCccccEEeecCCCccccCC-----CCCCCCCCCCcc
Q 047598 625 T-MIRT--LPESTNSLLNLEILILRNCSRLKK-----LPSKMRNLINLHHLDIKGANLLREMP-----LGMKELKNLRTL 691 (1112)
Q Consensus 625 n-~i~~--lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp-----~~i~~l~~L~~L 691 (1112)
| .+.. ++..+.++++|++|+|++|. +.. ++.....+++|++|++++|. ..++ .-+..+++|+.|
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEE
Confidence 7 4543 44445577888888888774 322 23333356678888887764 1111 112234555555
Q ss_pred CeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhcc
Q 047598 692 SNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLD 771 (1112)
Q Consensus 692 ~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 771 (1112)
++.++. .... .+..+..+++|+.|.+..+... ..... ......
T Consensus 217 ~L~~~~------------------------------~~~~-l~~~~~~~~~L~~L~l~~~~~~--~~~~~----~~~l~~ 259 (594)
T 2p1m_B 217 KLNRAV------------------------------PLEK-LATLLQRAPQLEELGTGGYTAE--VRPDV----YSGLSV 259 (594)
T ss_dssp ECCTTS------------------------------CHHH-HHHHHHHCTTCSEEECSBCCCC--CCHHH----HHHHHH
T ss_pred ecCCCC------------------------------cHHH-HHHHHhcCCcceEcccccccCc--cchhh----HHHHHH
Confidence 543321 1111 2333445566666665443210 00000 111112
Q ss_pred CCCCCCCCceE-EEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCC-CC-CCCCCCCcceEEecCCCCceecCccccCC
Q 047598 772 KLQPHKCIKNL-TIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTS-LP-SLGLLSSLRELTIQGLTKLKSIGSEVYGK 848 (1112)
Q Consensus 772 ~l~~~~~L~~L-~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~ 848 (1112)
.+..+++|+.| .+.+.....+|..+.. +++|++|+|++|.+... ++ .+..+++|+.|++++| +...+....
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~--~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l-- 333 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSV--CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVL-- 333 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHH--HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHH--
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHh--hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHH--
Confidence 33445566666 2333222333433322 67888899888874321 11 2567788888888876 221110000
Q ss_pred CCcccCcccceeecCC
Q 047598 849 GFSKPFQSLEILSFEN 864 (1112)
Q Consensus 849 ~~~~~~~~L~~L~l~~ 864 (1112)
...+++|+.|++.+
T Consensus 334 --~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 334 --ASTCKDLRELRVFP 347 (594)
T ss_dssp --HHHCTTCCEEEEEC
T ss_pred --HHhCCCCCEEEEec
Confidence 11267788887754
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=3.7e-17 Score=180.04 Aligned_cols=129 Identities=20% Similarity=0.123 Sum_probs=106.0
Q ss_pred CCcceeccccccCCcccccccccccccccccCCcccEEEecccccccc---cccccCCCcCcEEEccccccccccccccC
Q 047598 560 ENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGEL---LVSFEDLKLLRYLNLADTMIRTLPESTNS 636 (1112)
Q Consensus 560 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l---p~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~ 636 (1112)
++++.|.+.++. + ..++...|.++++|++|+|++|.+..+ |..+..+++|++|+|++|.+..+|..+..
T Consensus 28 ~~l~~L~L~~n~-------l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~ 99 (306)
T 2z66_A 28 SSATRLELESNK-------L-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 99 (306)
T ss_dssp TTCCEEECCSSC-------C-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEET
T ss_pred CCCCEEECCCCc-------c-CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCC
Confidence 578888876653 1 245566688999999999999988755 56777899999999999999999999999
Q ss_pred CCCCcEEeecCCCCCcccCc--cccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeec
Q 047598 637 LLNLEILILRNCSRLKKLPS--KMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 637 L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~ 697 (1112)
+++|++|++++| .+..+|. .+..+++|++|++++|.+....|..+..+++|++|++.++.
T Consensus 100 l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 100 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp CTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred CCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 999999999998 6766664 68899999999999998655666668888889888876654
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=2e-18 Score=190.83 Aligned_cols=256 Identities=15% Similarity=0.111 Sum_probs=163.7
Q ss_pred ccccccccCCcccEEEeccccccccc-ccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCC
Q 047598 583 VLSDLLPKFKRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNL 661 (1112)
Q Consensus 583 ~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 661 (1112)
.+...+..+++|++|+|++|.+..++ ..|..+++|++|+|++|.+..+++ +..+++|++|++++| .+..+|. +
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~ 98 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----G 98 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEE----C
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccC----C
Confidence 34455667789999999999998775 678999999999999999987765 889999999999998 6666653 4
Q ss_pred ccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCcc
Q 047598 662 INLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKE 741 (1112)
Q Consensus 662 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~ 741 (1112)
++|++|++++|. +..++.. .+++|++|++.++..... .+..+..++
T Consensus 99 ~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~-------------------------------~~~~~~~l~ 144 (317)
T 3o53_A 99 PSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITML-------------------------------RDLDEGCRS 144 (317)
T ss_dssp TTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSG-------------------------------GGBCTGGGS
T ss_pred CCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCc-------------------------------cchhhhccC
Confidence 899999999998 4444432 356777777766654332 112233344
Q ss_pred ccCceEEEeCCCCCCCchhhhhhHHHhhccCC-CCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCC
Q 047598 742 NLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKL-QPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPS 820 (1112)
Q Consensus 742 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~ 820 (1112)
+|+.|++++|.... .....+ ..+++|+.|++++|....+|.... +++|+.|+|++|.+....+.
T Consensus 145 ~L~~L~Ls~N~l~~------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~l~~~ 209 (317)
T 3o53_A 145 RVQYLDLKLNEIDT------------VNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPE 209 (317)
T ss_dssp SEEEEECTTSCCCE------------EEGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECGG
T ss_pred CCCEEECCCCCCCc------------ccHHHHhhccCcCCEEECCCCcCcccccccc---cccCCEEECCCCcCCcchhh
Confidence 55556665554311 011111 124556666666666555544332 66777777777776654456
Q ss_pred CCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCC
Q 047598 821 LGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPK 900 (1112)
Q Consensus 821 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 900 (1112)
+..+++|+.|++++| .+..++..+.. +++|+.|++++.+-. ....+..+..+++|+.|++.+|+.
T Consensus 210 ~~~l~~L~~L~L~~N-~l~~l~~~~~~------l~~L~~L~l~~N~~~--------~~~~~~~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 210 FQSAAGVTWISLRNN-KLVLIEKALRF------SQNLEHFDLRGNGFH--------CGTLRDFFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp GGGGTTCSEEECTTS-CCCEECTTCCC------CTTCCEEECTTCCCB--------HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcccCcccEEECcCC-cccchhhHhhc------CCCCCEEEccCCCcc--------CcCHHHHHhccccceEEECCCchh
Confidence 667777777777775 34455544332 677777777763221 012223345677777777776666
Q ss_pred CCCCCCCC
Q 047598 901 LSGKLPEL 908 (1112)
Q Consensus 901 L~~~~p~~ 908 (1112)
+++..|..
T Consensus 275 l~~~~~~~ 282 (317)
T 3o53_A 275 LTGQNEEE 282 (317)
T ss_dssp HHSSSSCC
T ss_pred ccCCchhc
Confidence 66554443
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=6e-18 Score=186.90 Aligned_cols=245 Identities=14% Similarity=0.100 Sum_probs=183.1
Q ss_pred hccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEcccccccccccccc
Q 047598 556 FYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTN 635 (1112)
Q Consensus 556 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~ 635 (1112)
+..+++|+.|.+.++. + ..+++..|..+++|++|+|++|.+..++. +..+++|++|+|++|.+..+|.
T Consensus 30 ~~~~~~L~~L~L~~n~-------l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~--- 97 (317)
T 3o53_A 30 RQSAWNVKELDLSGNP-------L-SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV--- 97 (317)
T ss_dssp HTTGGGCSEEECTTSC-------C-CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE---
T ss_pred hccCCCCCEEECcCCc-------c-CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC---
Confidence 3456789999887764 1 23445668899999999999999987765 9999999999999999988764
Q ss_pred CCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccC
Q 047598 636 SLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLG 715 (1112)
Q Consensus 636 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~ 715 (1112)
+++|++|++++| .+..++.. .+++|++|++++|.+....|..++.+++|++|++.++.....+
T Consensus 98 -~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------- 160 (317)
T 3o53_A 98 -GPSIETLHAANN-NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------------- 160 (317)
T ss_dssp -CTTCCEEECCSS-CCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE-------------
T ss_pred -CCCcCEEECCCC-ccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc-------------
Confidence 489999999998 67666643 4789999999999954444556888999999988766543220
Q ss_pred CeeEEecccCCCChhhhhhccc-cCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCC
Q 047598 716 GELCISGLENVNDSQKVREATL-CEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPS 794 (1112)
Q Consensus 716 ~~l~i~~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~ 794 (1112)
+..+ ..+++|+.|++++|... .+.....+++|+.|++++|....+|.
T Consensus 161 ------------------~~~~~~~l~~L~~L~L~~N~l~--------------~~~~~~~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 161 ------------------FAELAASSDTLEHLNLQYNFIY--------------DVKGQVVFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp ------------------GGGGGGGTTTCCEEECTTSCCC--------------EEECCCCCTTCCEEECCSSCCCEECG
T ss_pred ------------------HHHHhhccCcCCEEECCCCcCc--------------ccccccccccCCEEECCCCcCCcchh
Confidence 0111 24567788888776541 12333347889999999999888888
Q ss_pred ccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCc-eecCccccCCCCcccCcccceeecCCCCccc
Q 047598 795 WLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKL-KSIGSEVYGKGFSKPFQSLEILSFENLPEWE 869 (1112)
Q Consensus 795 ~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l-~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 869 (1112)
.+.. +++|+.|+|++|.+....+.+..+++|+.|++++|... ..++..+.. ++.|+.+++.++..+.
T Consensus 209 ~~~~--l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~------~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 209 EFQS--AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK------NQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGGG--GTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT------CHHHHHHHHHHHHHHH
T ss_pred hhcc--cCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc------cccceEEECCCchhcc
Confidence 7765 89999999999988754447889999999999998765 233332222 7888888888655444
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=4.8e-17 Score=176.95 Aligned_cols=202 Identities=19% Similarity=0.152 Sum_probs=138.6
Q ss_pred CcccEEEeccccccccc-ccccCCCcCcEEEccccccccc-cccccCCCCCcEEeecCCCCCccc-CccccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTL-PESTNSLLNLEILILRNCSRLKKL-PSKMRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~ 668 (1112)
++|++|++++|.+..++ ..|..+++|++|+|++|.+..+ |..+..+++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 57888888888887776 4578888888888888888766 567788888888888887546665 56677888888888
Q ss_pred ecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEE
Q 047598 669 IKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSL 748 (1112)
Q Consensus 669 L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 748 (1112)
+++|.+....|..+..+++|++|++.++.....+. ..+..+++|+.|++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------------~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-------------------------------DTFRDLGNLTHLFL 160 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------------------------TTTTTCTTCCEEEC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-------------------------------hHhccCCCccEEEC
Confidence 88887444345557778888888776654433211 11233445566666
Q ss_pred EeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCC-CCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCC
Q 047598 749 EWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARF-PSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSS 826 (1112)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 826 (1112)
+++... ......+..+++|+.|+++++....+ |.++.. +++|+.|++++|.+....+ .+..+++
T Consensus 161 ~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 161 HGNRIS------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--LGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp CSSCCC------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred CCCccc------------ccCHHHhcCccccCEEECCCCcccccCHhHccC--cccccEeeCCCCcCCcCCHHHcccCcc
Confidence 555431 11112244556777777777766555 556654 8899999999998766444 4888999
Q ss_pred cceEEecCCCCc
Q 047598 827 LRELTIQGLTKL 838 (1112)
Q Consensus 827 L~~L~L~~~~~l 838 (1112)
|+.|++++|+..
T Consensus 227 L~~L~l~~N~~~ 238 (285)
T 1ozn_A 227 LQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCEE
T ss_pred cCEEeccCCCcc
Confidence 999999988643
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=1.5e-16 Score=175.16 Aligned_cols=103 Identities=23% Similarity=0.195 Sum_probs=56.2
Q ss_pred ccEEEeccccccc--cccccc-------CCCcCcEEEccccccc-cccccc--cCCCCCcEEeecCCCCCcccCccccCC
Q 047598 594 LRVLSLQRYYIGE--LLVSFE-------DLKLLRYLNLADTMIR-TLPEST--NSLLNLEILILRNCSRLKKLPSKMRNL 661 (1112)
Q Consensus 594 L~~L~L~~~~~~~--lp~~~~-------~l~~Lr~L~Ls~n~i~-~lp~~i--~~L~~L~~L~L~~~~~l~~lp~~i~~L 661 (1112)
|++|+|++|.+.. +|..+. ++++|++|+|++|.+. .+|..+ +.+++|++|+|++| .+...|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH
Confidence 5555666655532 333333 4566666666666665 455554 56666666666665 444445555554
Q ss_pred -----ccccEEeecCCCccccCCCCCCCCCCCCccCeeeec
Q 047598 662 -----INLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 662 -----~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~ 697 (1112)
++|++|++++|.+....|..++.+++|++|++.++.
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 566666666665333223456666666666655543
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=3.1e-17 Score=180.77 Aligned_cols=249 Identities=18% Similarity=0.159 Sum_probs=164.3
Q ss_pred ccccCCcccEEEecccccccccccccCCCcCcEEEccccccc--ccccccc-------CCCCCcEEeecCCCCCcccCcc
Q 047598 587 LLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIR--TLPESTN-------SLLNLEILILRNCSRLKKLPSK 657 (1112)
Q Consensus 587 ~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~--~lp~~i~-------~L~~L~~L~L~~~~~l~~lp~~ 657 (1112)
.+...++|+.|++++|.+ .+|..+... |++|+|++|.+. .+|..+. ++++|++|+|++|.....+|..
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 345667899999999999 888777654 999999999986 4676665 7999999999999544578887
Q ss_pred c--cCCccccEEeecCCCccccCCCCCCCC-----CCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChh
Q 047598 658 M--RNLINLHHLDIKGANLLREMPLGMKEL-----KNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQ 730 (1112)
Q Consensus 658 i--~~L~~L~~L~L~~~~~l~~lp~~i~~l-----~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~ 730 (1112)
+ ..+++|++|++++|. +..+|..++.+ ++|++|++.++.....+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~---------------------------- 165 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS---------------------------- 165 (312)
T ss_dssp SSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC----------------------------
T ss_pred HHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccch----------------------------
Confidence 6 899999999999998 55557767666 88999988877654432
Q ss_pred hhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCC--CCCCCCceEEEeccCCCCCCC---ccCCCCCCcee
Q 047598 731 KVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKL--QPHKCIKNLTIKQYNGARFPS---WLGDPLFSKME 805 (1112)
Q Consensus 731 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~L~~L~l~~~~~~~~p~---~~~~~~l~~L~ 805 (1112)
+..+..+++|+.|++++|.... ....+..+ ..+++|+.|++++|....++. ++.. .+++|+
T Consensus 166 ---~~~~~~l~~L~~L~Ls~N~l~~----------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~l~~L~ 231 (312)
T 1wwl_A 166 ---CEQVRVFPALSTLDLSDNPELG----------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA-ARVQLQ 231 (312)
T ss_dssp ---TTTCCCCSSCCEEECCSCTTCH----------HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH-TTCCCS
T ss_pred ---HHHhccCCCCCEEECCCCCcCc----------chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh-cCCCCC
Confidence 1123344566666666654210 01111122 445667777777766553322 2211 257788
Q ss_pred EEEEcCcCCCCCC--CCCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCc
Q 047598 806 VLKLENCWNCTSL--PSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADR 883 (1112)
Q Consensus 806 ~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 883 (1112)
+|+|++|.+.+.. +.+..+++|+.|++++|. ++.+|..+ +++|+.|++++. ..... +.
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~--------~~~L~~L~Ls~N---------~l~~~-p~- 291 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL--------PAKLSVLDLSYN---------RLDRN-PS- 291 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSC--------CSEEEEEECCSS---------CCCSC-CC-
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhc--------cCCceEEECCCC---------CCCCC-hh-
Confidence 8888888776654 355667888888888764 33444322 256777777762 11111 22
Q ss_pred ccCCCccceEeEecCCCCC
Q 047598 884 VEIFPRLHKLSIMECPKLS 902 (1112)
Q Consensus 884 ~~~~p~L~~L~l~~c~~L~ 902 (1112)
+..+++|++|++++ |.++
T Consensus 292 ~~~l~~L~~L~L~~-N~l~ 309 (312)
T 1wwl_A 292 PDELPQVGNLSLKG-NPFL 309 (312)
T ss_dssp TTTSCEEEEEECTT-CTTT
T ss_pred HhhCCCCCEEeccC-CCCC
Confidence 45677777777777 5655
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=7.9e-17 Score=188.52 Aligned_cols=237 Identities=13% Similarity=0.063 Sum_probs=124.9
Q ss_pred cCCcccEEEeccccccccc-ccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEe
Q 047598 590 KFKRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLD 668 (1112)
Q Consensus 590 ~~~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 668 (1112)
.+++|++|+|++|.+..++ ..|..+++|++|+|++|.+..+++ ++.+++|++|+|++| .+..+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 4457777777777776654 567777777777777777775554 777777777777776 5555553 36777777
Q ss_pred ecCCCccccCCCCCCCCCCCCccCeeeeccCCc-ccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceE
Q 047598 669 IKGANLLREMPLGMKELKNLRTLSNFIVGKGEA-ISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLS 747 (1112)
Q Consensus 669 L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~-~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 747 (1112)
+++|. +..+|. ..+++|+.|++.++..... +..+..++ +|+.|+
T Consensus 106 L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~--------------------------------~L~~L~ 150 (487)
T 3oja_A 106 AANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRS--------------------------------RVQYLD 150 (487)
T ss_dssp CCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGS--------------------------------SEEEEE
T ss_pred CcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCC--------------------------------CCCEEE
Confidence 77777 333332 2345666666655544332 12233333 333333
Q ss_pred EEeCCCCCCCchhhhhhHHHhhccCCC-CCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCC
Q 047598 748 LEWGSQFDNSQDEVMEEYAVGVLDKLQ-PHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSS 826 (1112)
Q Consensus 748 l~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 826 (1112)
+++|.... .....+. .+++|+.|++++|....+|.... +++|+.|+|++|.+....|.++.+++
T Consensus 151 Ls~N~l~~------------~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~l~~ 215 (487)
T 3oja_A 151 LKLNEIDT------------VNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAG 215 (487)
T ss_dssp CTTSCCCE------------EEGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred CCCCCCCC------------cChHHHhhhCCcccEEecCCCcccccccccc---CCCCCEEECCCCCCCCCCHhHcCCCC
Confidence 33332210 0001111 23344444454444444433221 55666666666655544445556666
Q ss_pred cceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEec
Q 047598 827 LRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIME 897 (1112)
Q Consensus 827 L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 897 (1112)
|+.|+|++|. +..+|..+.. +++|+.|++++.+-. ....+..+..++.|+.|++..
T Consensus 216 L~~L~Ls~N~-l~~lp~~l~~------l~~L~~L~l~~N~l~--------c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 216 VTWISLRNNK-LVLIEKALRF------SQNLEHFDLRGNGFH--------CGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp CSEEECTTSC-CCEECTTCCC------CTTCCEEECTTCCBC--------HHHHHHHHTTCHHHHHHHHHH
T ss_pred ccEEEecCCc-Ccccchhhcc------CCCCCEEEcCCCCCc--------CcchHHHHHhCCCCcEEeccc
Confidence 6666666543 3334443222 556666666653221 011222334566666666653
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=4.3e-19 Score=215.86 Aligned_cols=132 Identities=18% Similarity=0.164 Sum_probs=89.1
Q ss_pred ccCCCcceeccccccCCcccccccccccccccccCCcccEEEeccc-cccc--ccccccCCCcCcEEEcccccccc----
Q 047598 557 YQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRY-YIGE--LLVSFEDLKLLRYLNLADTMIRT---- 629 (1112)
Q Consensus 557 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~--lp~~~~~l~~Lr~L~Ls~n~i~~---- 629 (1112)
..+++|+.|.+.++. +....+......+++|++|+|++| .++. ++..+..+++|++|+|++|.+..
T Consensus 102 ~~~~~L~~L~L~~~~-------~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~ 174 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV-------VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH 174 (594)
T ss_dssp HHCTTCCEEEEESCB-------CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG
T ss_pred HhCCCCCeEEeeCcE-------EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH
Confidence 357788888876543 222333333336789999999988 4544 45555678899999999887653
Q ss_pred -ccccccCCCCCcEEeecCCC-CC--cccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeee
Q 047598 630 -LPESTNSLLNLEILILRNCS-RL--KKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFI 695 (1112)
Q Consensus 630 -lp~~i~~L~~L~~L~L~~~~-~l--~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~ 695 (1112)
++.....+++|++|++++|. .+ ..++.-+..+++|++|++++|.....+|..+..+++|+.|++..
T Consensus 175 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 33334577899999999884 11 11222234578999999998855666776677888888886543
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=2.6e-15 Score=162.36 Aligned_cols=203 Identities=19% Similarity=0.110 Sum_probs=130.8
Q ss_pred CcccEEEecccccccccc-cccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccC-ccccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGELLV-SFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLP-SKMRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~-~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 668 (1112)
++|++|++++|.+..++. .|.++++|++|+|++|.+..++. .+.++++|++|++++| .+..++ ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 467888888888877764 67788888888888888877655 5778888888888887 444444 5677888888888
Q ss_pred ecCCCccccCCC-CCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceE
Q 047598 669 IKGANLLREMPL-GMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLS 747 (1112)
Q Consensus 669 L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 747 (1112)
+++|. +..++. .++.+++|++|++.++...... .+..+.++++|+.|+
T Consensus 107 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------------------l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFK------------------------------LPEYFSNLTNLEHLD 155 (276)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCC------------------------------CCGGGGGCTTCCEEE
T ss_pred CCCCC-ccccCchhcccCCCCCEEECcCCccceec------------------------------CchhhccCCCCCEEE
Confidence 88887 344443 5777788888777665543210 011233444556666
Q ss_pred EEeCCCCCCCchhhhhhHHHhhccCCCCCCCCc-eEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCC
Q 047598 748 LEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIK-NLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLS 825 (1112)
Q Consensus 748 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~ 825 (1112)
+++|....... ..+..+.....+. .|+++++....+|..... ..+|+.|+|++|.+....+ .++.++
T Consensus 156 Ls~N~l~~~~~---------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~ 224 (276)
T 2z62_A 156 LSSNKIQSIYC---------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLT 224 (276)
T ss_dssp CCSSCCCEECG---------GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred CCCCCCCcCCH---------HHhhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhcccc
Confidence 65554311110 0111111122222 577777777767665544 4589999999988765444 468899
Q ss_pred CcceEEecCCCC
Q 047598 826 SLRELTIQGLTK 837 (1112)
Q Consensus 826 ~L~~L~L~~~~~ 837 (1112)
+|+.|++++|+.
T Consensus 225 ~L~~L~l~~N~~ 236 (276)
T 2z62_A 225 SLQKIWLHTNPW 236 (276)
T ss_dssp SCCEEECCSSCB
T ss_pred cccEEEccCCcc
Confidence 999999998753
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=1e-15 Score=167.86 Aligned_cols=191 Identities=20% Similarity=0.196 Sum_probs=124.0
Q ss_pred ccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEe
Q 047598 589 PKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLD 668 (1112)
Q Consensus 589 ~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 668 (1112)
..+++|+.|++++|.+..+| .+..+++|++|+|++|.+..+|. +..+++|++|++++| .+..+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence 45677888888888777776 57778888888888888877776 778888888888887 566665 477788888888
Q ss_pred ecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEE
Q 047598 669 IKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSL 748 (1112)
Q Consensus 669 L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 748 (1112)
+++|. +..+|. +..+++|+.|++.++.....+. +..+++|+.|++
T Consensus 114 l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~---------------------------------l~~l~~L~~L~l 158 (308)
T 1h6u_A 114 LTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP---------------------------------LAGLTNLQYLSI 158 (308)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG---------------------------------GGGCTTCCEEEC
T ss_pred CCCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc---------------------------------ccCCCCccEEEc
Confidence 88887 455554 7777777777766554332211 223345555555
Q ss_pred EeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcc
Q 047598 749 EWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLR 828 (1112)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 828 (1112)
+.|.... +..+..+++|+.|++++|....++. +.. +++|++|+|++|.+... +.+..+++|+
T Consensus 159 ~~n~l~~--------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~~--l~~L~~L~L~~N~l~~~-~~l~~l~~L~ 220 (308)
T 1h6u_A 159 GNAQVSD--------------LTPLANLSKLTTLKADDNKISDISP-LAS--LPNLIEVHLKNNQISDV-SPLANTSNLF 220 (308)
T ss_dssp CSSCCCC--------------CGGGTTCTTCCEEECCSSCCCCCGG-GGG--CTTCCEEECTTSCCCBC-GGGTTCTTCC
T ss_pred cCCcCCC--------------ChhhcCCCCCCEEECCCCccCcChh-hcC--CCCCCEEEccCCccCcc-ccccCCCCCC
Confidence 5553210 1113344556666666666555554 222 67777777777766543 3467777777
Q ss_pred eEEecCCC
Q 047598 829 ELTIQGLT 836 (1112)
Q Consensus 829 ~L~L~~~~ 836 (1112)
.|++++|.
T Consensus 221 ~L~l~~N~ 228 (308)
T 1h6u_A 221 IVTLTNQT 228 (308)
T ss_dssp EEEEEEEE
T ss_pred EEEccCCe
Confidence 77777754
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=8.4e-17 Score=188.30 Aligned_cols=230 Identities=14% Similarity=0.115 Sum_probs=167.3
Q ss_pred CCCcCcEEEcccccccccc-ccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCcc
Q 047598 613 DLKLLRYLNLADTMIRTLP-ESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTL 691 (1112)
Q Consensus 613 ~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 691 (1112)
.+++|++|+|++|.+..+| ..|+.+++|++|+|++| .+...++ ++.+++|++|+|++|. +..+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEE
Confidence 4458999999999999775 57999999999999998 5665555 9999999999999998 565553 3788888
Q ss_pred CeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhcc
Q 047598 692 SNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLD 771 (1112)
Q Consensus 692 ~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 771 (1112)
++.++.....+. ..+++|+.|++++|.... ....
T Consensus 105 ~L~~N~l~~~~~----------------------------------~~l~~L~~L~L~~N~l~~------------~~~~ 138 (487)
T 3oja_A 105 HAANNNISRVSC----------------------------------SRGQGKKNIYLANNKITM------------LRDL 138 (487)
T ss_dssp ECCSSCCCCEEE----------------------------------CCCSSCEEEECCSSCCCS------------GGGB
T ss_pred ECcCCcCCCCCc----------------------------------cccCCCCEEECCCCCCCC------------CCch
Confidence 877665433211 113467778887776421 1122
Q ss_pred CCCCCCCCceEEEeccCCCCC-CCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCCceecCccccCCCC
Q 047598 772 KLQPHKCIKNLTIKQYNGARF-PSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGF 850 (1112)
Q Consensus 772 ~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~ 850 (1112)
.+..+++|+.|++++|..... |.++.. .+++|+.|+|++|.+.+. +....+++|+.|+|++|. +..++..+..
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~--- 212 (487)
T 3oja_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAA-SSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGPEFQS--- 212 (487)
T ss_dssp CGGGGSSEEEEECTTSCCCEEEGGGGGG-GTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECGGGGG---
T ss_pred hhcCCCCCCEEECCCCCCCCcChHHHhh-hCCcccEEecCCCccccc-cccccCCCCCEEECCCCC-CCCCCHhHcC---
Confidence 334567899999999987764 444431 379999999999987654 666679999999999975 5566665544
Q ss_pred cccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCC-CCCCCCCCCccee
Q 047598 851 SKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLS-GKLPELLPSLETL 915 (1112)
Q Consensus 851 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~-~~~p~~~~~L~~L 915 (1112)
+++|+.|+++++. .. .++..+..+++|+.|++++ |.+. +.+|..+..+..|
T Consensus 213 ---l~~L~~L~Ls~N~---------l~-~lp~~l~~l~~L~~L~l~~-N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 213 ---AAGVTWISLRNNK---------LV-LIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp ---GTTCSEEECTTSC---------CC-EECTTCCCCTTCCEEECTT-CCBCHHHHHHHHTTCHHH
T ss_pred ---CCCccEEEecCCc---------Cc-ccchhhccCCCCCEEEcCC-CCCcCcchHHHHHhCCCC
Confidence 8999999999832 11 2444567889999999999 5565 4555545555444
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=2.6e-15 Score=161.68 Aligned_cols=105 Identities=25% Similarity=0.359 Sum_probs=74.0
Q ss_pred cccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCc-cccCCccccE
Q 047598 588 LPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPS-KMRNLINLHH 666 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~ 666 (1112)
+..+++|+.|++++|.+..++ .+..+++|++|+|++|.+..++ .++.+++|++|++++| .+..+|. .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 345677888888888877664 4777888888888888887764 6778888888888887 5555554 4677888888
Q ss_pred EeecCCCccccCCCC-CCCCCCCCccCeeee
Q 047598 667 LDIKGANLLREMPLG-MKELKNLRTLSNFIV 696 (1112)
Q Consensus 667 L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~ 696 (1112)
|++++|. +..+|.. ++.+++|++|++.++
T Consensus 114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCc-CCccCHHHhccCCCCCEEECCCC
Confidence 8888887 3444433 556666666655443
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=5e-15 Score=160.56 Aligned_cols=103 Identities=21% Similarity=0.213 Sum_probs=56.5
Q ss_pred ccCCcccEEEecccccccccccccCCCcCcEEEccccccccc-cccccCCCCCcEEeecCCCCCcccCccccCCccccEE
Q 047598 589 PKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTL-PESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHL 667 (1112)
Q Consensus 589 ~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 667 (1112)
.++++++.++++++.++.+|..+. ++|++|+|++|.+..+ |..+..+++|++|+|++| .+..+|.. +.+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 444555566666655555555443 4556666666655544 234555666666666655 44444442 555566666
Q ss_pred eecCCCccccCCCCCCCCCCCCccCeeee
Q 047598 668 DIKGANLLREMPLGMKELKNLRTLSNFIV 696 (1112)
Q Consensus 668 ~L~~~~~l~~lp~~i~~l~~L~~L~~~~~ 696 (1112)
++++|. +..+|..+..+++|++|++.++
T Consensus 83 ~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 83 DLSHNQ-LQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp ECCSSC-CSSCCCCTTTCTTCCEEECCSS
T ss_pred ECCCCc-CCcCchhhccCCCCCEEECCCC
Confidence 666555 4455555555555555555444
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.4e-14 Score=155.71 Aligned_cols=100 Identities=22% Similarity=0.346 Sum_probs=57.9
Q ss_pred cccEEEecccccccccccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccCcc-ccCCccccEEeec
Q 047598 593 RLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLPSK-MRNLINLHHLDIK 670 (1112)
Q Consensus 593 ~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~ 670 (1112)
..+.++++++.++.+|..+. .+|++|+|++|.+..+|. .|.++++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence 35566666666666665443 456666666666665554 4666666666666665 45555543 3556666666666
Q ss_pred CCCccccCCCC-CCCCCCCCccCeeee
Q 047598 671 GANLLREMPLG-MKELKNLRTLSNFIV 696 (1112)
Q Consensus 671 ~~~~l~~lp~~-i~~l~~L~~L~~~~~ 696 (1112)
+|. +..+|.. +..+++|++|++.++
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEECCSS
T ss_pred CCc-CCcCCHhHcccccCCCEEECCCC
Confidence 666 3444432 455566666555443
No 82
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.59 E-value=5e-16 Score=139.01 Aligned_cols=79 Identities=27% Similarity=0.409 Sum_probs=69.7
Q ss_pred HHHHHHHhcChhHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhhc--ccccHHHHHHHHHHHHHHHhhHhHHHHHHH
Q 047598 13 FQVLFDRLASPDLFSFVRQLGGGVDSELKKWEKKLRMIQAMLRDAEEK--QLTDEAVKMWLDDLQDLAYDAEDILDEFAT 90 (1112)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~ 90 (1112)
++.+++++++.+..++.... ||++++++|+++|++|++||.+|+++ +..++.++.|+++|||+|||+|||||+|.+
T Consensus 3 v~~ll~KL~~ll~~E~~l~~--gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHK--GVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777 89999999999999999999999987 557999999999999999999999999998
Q ss_pred HHH
Q 047598 91 QAL 93 (1112)
Q Consensus 91 ~~~ 93 (1112)
+..
T Consensus 81 ~~~ 83 (115)
T 3qfl_A 81 QVD 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 864
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=2.2e-14 Score=160.58 Aligned_cols=103 Identities=21% Similarity=0.207 Sum_probs=77.7
Q ss_pred cEEEecccccccccccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccCc-cccCCccccEE-eecC
Q 047598 595 RVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLPS-KMRNLINLHHL-DIKG 671 (1112)
Q Consensus 595 ~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L-~L~~ 671 (1112)
++++.+++.++++|..+. .++++|+|++|.|+.+|+ .|.+|++|++|+|++|...+.+|. .|.++++|+++ .+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 567788888888887763 588999999999998886 478899999999999855566765 46788887764 4445
Q ss_pred CCccccCC-CCCCCCCCCCccCeeeeccCC
Q 047598 672 ANLLREMP-LGMKELKNLRTLSNFIVGKGE 700 (1112)
Q Consensus 672 ~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~ 700 (1112)
|. +..+| ..+..+++|++|++.++....
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 90 NN-LLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp TT-CCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred Cc-ccccCchhhhhcccccccccccccccc
Confidence 55 55554 447888888888887776543
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=8.4e-15 Score=158.34 Aligned_cols=219 Identities=15% Similarity=0.154 Sum_probs=142.9
Q ss_pred EEEecccccccccccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccCc-cccCCccccEEeecCCC
Q 047598 596 VLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLPS-KMRNLINLHHLDIKGAN 673 (1112)
Q Consensus 596 ~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~ 673 (1112)
..+..+..+..+|..+. ++|++|+|++|.+..+|. .+.++++|++|++++| .+..++. .+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc
Confidence 45566667788888765 589999999999998876 7899999999999998 6666654 78999999999999999
Q ss_pred ccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCC
Q 047598 674 LLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQ 753 (1112)
Q Consensus 674 ~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 753 (1112)
+....|..+..+++|++|++..+.....+ ...+..+++|+.|+++++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------------~~~~~~l~~L~~L~l~~n~- 135 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLE-------------------------------NFPIGHLKTLKELNVAHNL- 135 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCST-------------------------------TCCCTTCTTCCEEECCSSC-
T ss_pred cCccChhhhcCCccccEEECCCCCccccC-------------------------------chhcccCCCCCEEECcCCc-
Confidence 54444456888888888877654332210 0112334455555554443
Q ss_pred CCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCC--CCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcc--
Q 047598 754 FDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGAR--FPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLR-- 828 (1112)
Q Consensus 754 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~-- 828 (1112)
... +|.++.. +++|+.|+|++|.+....+ .+..+++|+
T Consensus 136 -----------------------------------l~~~~l~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 136 -----------------------------------IQSFKLPEYFSN--LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp -----------------------------------CCCCCCCGGGGG--CTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred -----------------------------------cceecCchhhcc--CCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 222 4555554 6778888888777654333 344444444
Q ss_pred --eEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCC
Q 047598 829 --ELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSG 903 (1112)
Q Consensus 829 --~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~ 903 (1112)
.|++++|. +..++...+. ..+|+.|++++. ......+..+..+++|+.|++++ |.+++
T Consensus 179 ~l~L~ls~n~-l~~~~~~~~~------~~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~l~~-N~~~c 238 (276)
T 2z62_A 179 NLSLDLSLNP-MNFIQPGAFK------EIRLKELALDTN---------QLKSVPDGIFDRLTSLQKIWLHT-NPWDC 238 (276)
T ss_dssp CEEEECCSSC-CCEECTTSSC------SCCEEEEECCSS---------CCSCCCTTTTTTCCSCCEEECCS-SCBCC
T ss_pred ceeeecCCCc-ccccCccccC------CCcccEEECCCC---------ceeecCHhHhcccccccEEEccC-Ccccc
Confidence 67777754 4444443333 346777777762 22222233446677788888877 56653
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=1.9e-14 Score=165.79 Aligned_cols=318 Identities=11% Similarity=-0.006 Sum_probs=185.6
Q ss_pred cceecchhhHHHHHHHH-hcCCCCCCC-CCCeEEEEE--EccCCCcHHHHHHHHhccccccccCCCCc-eeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMV-LSTDEKTDD-DANFRVIPI--VGMAGVGKTTLAREVYNDKSLNAKDFKFD-IKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L-~~~~~~~~~-~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~~~~~~F~-~~~wv~~~~~~ 252 (1112)
..++||+.+++++.+++ ..... + ....+.+.| +|++|+||||||+.+++..........|. .++|+.+....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~---~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS---GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT---SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCChHHHHHHHHHHHhHHHhc---CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 57999999999999988 42100 1 023456666 99999999999999998753210001122 45788877777
Q ss_pred CHHHHHHHHHHHhcCCCCC-CCChHHHHHHHHHHhC--CCcEEEEEeCCCCC------ChhhHHHHHhcccCC---C--C
Q 047598 253 DVLSISKALLESITRKPCH-LNTLNEVQVDLKTAVD--GKRFLLVLDDVWNE------DYSLWVDLKAPLLAA---A--P 318 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~------~~~~~~~l~~~l~~~---~--~ 318 (1112)
+...++..++.+++..... ..+..+....+.+.+. +++++|||||+|.. ....+..+...+... + .
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 8889999999998765322 2344555666666664 67999999999752 123343333333221 2 3
Q ss_pred CcEEEEEcCChhhhhhc--------C-CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcC------
Q 047598 319 NSKMIITTRHSHVASTM--------G-PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCG------ 383 (1112)
Q Consensus 319 gs~iivTTR~~~v~~~~--------~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~------ 383 (1112)
...+|+||+...+...+ . ....+.+.+++.++++++|...+...... .....+....|++.|+
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSC
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCC
Confidence 44588888765532111 1 11238999999999999997654311110 1112345678889999
Q ss_pred CchHHHHHHhhhh-c-----CC---CHHHHHHHHhccccCCCCCCCchHHHHHHhcCCchHHHHHHhHhhcCC--CCcee
Q 047598 384 GLPLAAKSLGGLL-R-----TT---RCDLWEDILDSKIWDLPQQSGILPVLRLSYHHLPSYLKRCFAYCAIFP--KDYEF 452 (1112)
Q Consensus 384 glPlai~~~~~~l-~-----~~---~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp--~~~~i 452 (1112)
|.|..+..+.... . +. +.+.+...+..... ...+.-++..||++.+.++..++.+. .+..+
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA--------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 9997555544321 1 11 34455544433210 12233356789999999999888754 23345
Q ss_pred chHHHHHHHHhCCcccccCCCchHHHHHHHHHHHHhhCCccccccC---CCccceechhH
Q 047598 453 YEKELVFLWIGGGIIRQSKNNEQLEDLGSQCFHDLVSRSIFQPSSR---NSCKFVMHDLV 509 (1112)
Q Consensus 453 ~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~---~~~~~~~H~lv 509 (1112)
....+...|..-.. ...............++++|+..++|..... ....|++|.+.
T Consensus 329 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 329 NAGLLRQRYEDASL-TMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CHHHHHHHHHHHHH-HHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred cHHHHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 45444443321000 0000001113446678999999999976532 13345566554
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=1.6e-14 Score=152.23 Aligned_cols=193 Identities=15% Similarity=0.129 Sum_probs=115.2
Q ss_pred cccEEEecccccccccc-cccCCCcCcEEEccccc-cccccc-cccCCCCCcEEeecCCCCCcccCc-cccCCccccEEe
Q 047598 593 RLRVLSLQRYYIGELLV-SFEDLKLLRYLNLADTM-IRTLPE-STNSLLNLEILILRNCSRLKKLPS-KMRNLINLHHLD 668 (1112)
Q Consensus 593 ~L~~L~L~~~~~~~lp~-~~~~l~~Lr~L~Ls~n~-i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 668 (1112)
.|++|++++|.++.+|. .|.++++|++|++++|. ++.+|. .|.++++|++|++++|..+..+|. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776664 56777777777777775 666655 566777777777776225555553 466677777777
Q ss_pred ecCCCccccCCCCCCCCCCCC---ccCeeee-ccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccC
Q 047598 669 IKGANLLREMPLGMKELKNLR---TLSNFIV-GKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLK 744 (1112)
Q Consensus 669 L~~~~~l~~lp~~i~~l~~L~---~L~~~~~-~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 744 (1112)
+++|. +..+|. ++.+++|+ +|++.++ .....
T Consensus 112 l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i------------------------------------------- 146 (239)
T 2xwt_C 112 IFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSI------------------------------------------- 146 (239)
T ss_dssp EEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEE-------------------------------------------
T ss_pred CCCCC-Cccccc-cccccccccccEEECCCCcchhhc-------------------------------------------
Confidence 77776 444554 55555554 4443332 11110
Q ss_pred ceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCc-eEEEeccCCCCCCCccCCCCCCceeEEEEcCcC-CCCCCC-CC
Q 047598 745 TLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIK-NLTIKQYNGARFPSWLGDPLFSKMEVLKLENCW-NCTSLP-SL 821 (1112)
Q Consensus 745 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~-~~~~l~-~l 821 (1112)
....+..+++|+ .|+++++....+|..... .++|+.|+|++|. +....+ .+
T Consensus 147 ------------------------~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~--~~~L~~L~L~~n~~l~~i~~~~~ 200 (239)
T 2xwt_C 147 ------------------------PVNAFQGLCNETLTLKLYNNGFTSVQGYAFN--GTKLDAVYLNKNKYLTVIDKDAF 200 (239)
T ss_dssp ------------------------CTTTTTTTBSSEEEEECCSCCCCEECTTTTT--TCEEEEEECTTCTTCCEECTTTT
T ss_pred ------------------------CcccccchhcceeEEEcCCCCCcccCHhhcC--CCCCCEEEcCCCCCcccCCHHHh
Confidence 001122234445 555555555556655443 3678888888885 443322 56
Q ss_pred CCC-CCcceEEecCCCCceecCccccCCCCcccCcccceeecCCC
Q 047598 822 GLL-SSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENL 865 (1112)
Q Consensus 822 ~~l-~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~ 865 (1112)
..+ ++|+.|++++|. +..++.. .|++|+.|.+.+.
T Consensus 201 ~~l~~~L~~L~l~~N~-l~~l~~~--------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 201 GGVYSGPSLLDVSQTS-VTALPSK--------GLEHLKELIARNT 236 (239)
T ss_dssp TTCSBCCSEEECTTCC-CCCCCCT--------TCTTCSEEECTTC
T ss_pred hccccCCcEEECCCCc-cccCChh--------HhccCceeeccCc
Confidence 777 888888888754 4445433 1677777777663
No 87
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.57 E-value=8.3e-14 Score=156.61 Aligned_cols=291 Identities=13% Similarity=0.108 Sum_probs=178.0
Q ss_pred CCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC---
Q 047598 176 TERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF--- 252 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~--- 252 (1112)
....|+||+.+++++.+++.. + +++.|+|++|+|||||++++++.. + .+|+.+....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~------~----~~v~i~G~~G~GKT~Ll~~~~~~~------~----~~~~~~~~~~~~~ 69 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN------Y----PLTLLLGIRRVGKSSLLRAFLNER------P----GILIDCRELYAER 69 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH------C----SEEEEECCTTSSHHHHHHHHHHHS------S----EEEEEHHHHHHTT
T ss_pred ChHhcCChHHHHHHHHHHHhc------C----CeEEEECCCcCCHHHHHHHHHHHc------C----cEEEEeecccccc
Confidence 456799999999999998864 1 589999999999999999998753 1 5677765432
Q ss_pred ---CHHHHHHHHHHHhcC-----------------CCC-CCCChHHHHHHHHHHhCC-CcEEEEEeCCCCCCh------h
Q 047598 253 ---DVLSISKALLESITR-----------------KPC-HLNTLNEVQVDLKTAVDG-KRFLLVLDDVWNEDY------S 304 (1112)
Q Consensus 253 ---~~~~~~~~il~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~------~ 304 (1112)
+...+...+...+.. ... ......+....+.+.... ++++||+||++.... .
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~ 149 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGK 149 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTH
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchh
Confidence 455666666665432 000 113455555566555542 389999999976321 1
Q ss_pred hHHHHHhcccCCCCCcEEEEEcCChhhhhh----------c-C-CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHH
Q 047598 305 LWVDLKAPLLAAAPNSKMIITTRHSHVAST----------M-G-PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISE 372 (1112)
Q Consensus 305 ~~~~l~~~l~~~~~gs~iivTTR~~~v~~~----------~-~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~ 372 (1112)
.+......+....++.++|+|++...+... . + ....+.+.+|+.+|+.+++......... ... .
T Consensus 150 ~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~---~ 225 (350)
T 2qen_A 150 ELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVP---E 225 (350)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---H
T ss_pred hHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---H
Confidence 222222222222257789999887543111 1 1 1247899999999999999875422211 111 2
Q ss_pred HHHHHHHhhcCCchHHHHHHhhhhcC-CCHHHHHH-HHhccccCCCCCCCchHHHHHHhcCC---chHHHHHHhHhhcCC
Q 047598 373 LFRKKVVGKCGGLPLAAKSLGGLLRT-TRCDLWED-ILDSKIWDLPQQSGILPVLRLSYHHL---PSYLKRCFAYCAIFP 447 (1112)
Q Consensus 373 ~~~~~i~~~c~glPlai~~~~~~l~~-~~~~~w~~-~l~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cfl~~a~fp 447 (1112)
+.+.+|++.|+|+|+++..++..+.. .+...+.. ..+. +...+.-.+..+ ++..+..+..+|.
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~l~~~~~~~~~~l~~la~-- 293 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV----------AKGLIMGELEELRRRSPRYVDILRAIAL-- 293 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH----------HHHHHHHHHHHHHhCChhHHHHHHHHHh--
Confidence 35688999999999999999876432 23222211 1111 111111122223 7788999999987
Q ss_pred CCceechHHHHHHHHhCCcccccCCCchHHHHHHHHHHHHhhCCccccccCCCccce-echhHHHHHH
Q 047598 448 KDYEFYEKELVFLWIGGGIIRQSKNNEQLEDLGSQCFHDLVSRSIFQPSSRNSCKFV-MHDLVHDLAQ 514 (1112)
Q Consensus 448 ~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~-~H~lv~~~~~ 514 (1112)
+ .++...+....-+.. ++. .......+++.|++.++|.... ..|. .|++++.+.+
T Consensus 294 -g-~~~~~~l~~~~~~~~------~~~-~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 294 -G-YNRWSLIRDYLAVKG------TKI-PEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp -T-CCSHHHHHHHHHHTT------CCC-CHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred -C-CCCHHHHHHHHHHHh------CCC-CHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 2 234445544332210 001 1244678899999999998652 2455 4788877653
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=4.9e-14 Score=148.53 Aligned_cols=208 Identities=16% Similarity=0.216 Sum_probs=107.9
Q ss_pred CCCCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCc
Q 047598 789 GARFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPE 867 (1112)
Q Consensus 789 ~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~ 867 (1112)
...+|. + .++|+.|++++|.+....+ .++.+++|+.|++++|..++.++...+.. +++|+.|+++++..
T Consensus 23 l~~ip~-~----~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~-----l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 23 IQRIPS-L----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN-----LSKVTHIEIRNTRN 92 (239)
T ss_dssp CSSCCC-C----CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES-----CTTCCEEEEEEETT
T ss_pred ccccCC-C----CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC-----CcCCcEEECCCCCC
Confidence 455666 3 3578888888887765544 67788888888888876566665432221 55555555554322
Q ss_pred ccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCCCCCcC---EE
Q 047598 868 WEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHRLNFLE---HL 944 (1112)
Q Consensus 868 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~l~~L~---~L 944 (1112)
+..+. +..+..+++|++|++++ +++++ +| . +..+++|+ .|
T Consensus 93 l~~i~--------~~~f~~l~~L~~L~l~~-n~l~~-lp--------------------------~-~~~l~~L~~L~~L 135 (239)
T 2xwt_C 93 LTYID--------PDALKELPLLKFLGIFN-TGLKM-FP--------------------------D-LTKVYSTDIFFIL 135 (239)
T ss_dssp CCEEC--------TTSEECCTTCCEEEEEE-ECCCS-CC--------------------------C-CTTCCBCCSEEEE
T ss_pred eeEcC--------HHHhCCCCCCCEEeCCC-CCCcc-cc--------------------------c-cccccccccccEE
Confidence 22211 12223455555555555 34442 33 2 33344444 66
Q ss_pred EEecCCCCcccCCC--CCCCCCC-eEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCcccccccCCCCccE
Q 047598 945 RIGQCPSILSFPEE--GFPTNLA-SLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTH 1021 (1112)
Q Consensus 945 ~L~~~~~l~~~~~~--~~~~~L~-~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~ 1021 (1112)
++++|+.++.++.. ..+++|+ .|++++|. .....+..+.. ++|+.|++++|+. +..++...
T Consensus 136 ~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~--l~~i~~~~~~~-~~L~~L~L~~n~~--l~~i~~~~----------- 199 (239)
T 2xwt_C 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNG--FTSVQGYAFNG-TKLDAVYLNKNKY--LTVIDKDA----------- 199 (239)
T ss_dssp EEESCTTCCEECTTTTTTTBSSEEEEECCSCC--CCEECTTTTTT-CEEEEEECTTCTT--CCEECTTT-----------
T ss_pred ECCCCcchhhcCcccccchhcceeEEEcCCCC--CcccCHhhcCC-CCCCEEEcCCCCC--cccCCHHH-----------
Confidence 66666444444432 2234444 44444441 11111122222 4555555555420 22222211
Q ss_pred EEecCCCCCCcCCCC-CCCCeEEeecCCCCCcCCCCCCCCCccEEEEccCcc
Q 047598 1022 LTIAGFKKLKKLSLM-TSLEYLWIKNCPNLASFPELGLPSSLTQLYIDHCPL 1072 (1112)
Q Consensus 1022 L~l~~~~~L~~l~~l-~~L~~L~ls~c~~l~~lp~~~~~~~L~~L~l~~c~~ 1072 (1112)
+..+ ++|+.|++++|+ ++.+|.. .+++|+.|++++|..
T Consensus 200 -----------~~~l~~~L~~L~l~~N~-l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 200 -----------FGGVYSGPSLLDVSQTS-VTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp -----------TTTCSBCCSEEECTTCC-CCCCCCT-TCTTCSEEECTTC--
T ss_pred -----------hhccccCCcEEECCCCc-cccCChh-HhccCceeeccCccC
Confidence 2245 788888888874 4556653 567888888887754
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=7e-14 Score=156.52 Aligned_cols=235 Identities=15% Similarity=0.108 Sum_probs=154.3
Q ss_pred eEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccce
Q 047598 781 NLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEI 859 (1112)
Q Consensus 781 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~ 859 (1112)
.+..+++....+|..+ .+++++|+|++|.+....+ .+.++++|+.|+|++|...+.++...+.. +++|..
T Consensus 13 ~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~-----L~~l~~ 83 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN-----LPKLHE 83 (350)
T ss_dssp EEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS-----CTTCCE
T ss_pred EEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc-----chhhhh
Confidence 4556666777888765 4689999999998765443 58899999999999988777777654432 667666
Q ss_pred eecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcc-cCCCC
Q 047598 860 LSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPN-DMHRL 938 (1112)
Q Consensus 860 L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~-~l~~l 938 (1112)
+...+...+.. ..+..+..+++|++|++++ |+++...+..+.....+ ..+.+.++..+..+|. .+..+
T Consensus 84 ~l~~~~N~l~~--------l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l--~~l~l~~~~~i~~l~~~~f~~~ 152 (350)
T 4ay9_X 84 IRIEKANNLLY--------INPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQK--VLLDIQDNINIHTIERNSFVGL 152 (350)
T ss_dssp EEEEEETTCCE--------ECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSC--EEEEEESCTTCCEECTTSSTTS
T ss_pred hhcccCCcccc--------cCchhhhhccccccccccc-cccccCCchhhcccchh--hhhhhccccccccccccchhhc
Confidence 55444333332 2334567889999999999 68875444444443333 3456677777777764 34444
Q ss_pred -CCcCEEEEecCCCCcccCCC-CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCcccccccCC
Q 047598 939 -NFLEHLRIGQCPSILSFPEE-GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGVMLP 1016 (1112)
Q Consensus 939 -~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~~~~ 1016 (1112)
..|+.|++++| .++.++.. ....+|+.|++.+|. ......+..|..+++|+.|++++|. ++.+|...+
T Consensus 153 ~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n-~l~~i~~~~f~~l~~L~~LdLs~N~---l~~lp~~~~----- 222 (350)
T 4ay9_X 153 SFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNN-NLEELPNDVFHGASGPVILDISRTR---IHSLPSYGL----- 222 (350)
T ss_dssp BSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCT-TCCCCCTTTTTTEECCSEEECTTSC---CCCCCSSSC-----
T ss_pred chhhhhhccccc-cccCCChhhccccchhHHhhccCC-cccCCCHHHhccCcccchhhcCCCC---cCccChhhh-----
Confidence 46888999988 45566655 345688899988653 3334444567889999999999986 777776432
Q ss_pred CCccEEEecCCCCCCcCC---CCCCCCeEEee
Q 047598 1017 SSLTHLTIAGFKKLKKLS---LMTSLEYLWIK 1045 (1112)
Q Consensus 1017 ~sL~~L~l~~~~~L~~l~---~l~~L~~L~ls 1045 (1112)
..|+.|.+.++.+++.++ .+++|+.++++
T Consensus 223 ~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp TTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred ccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 345555555554444443 34445555544
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=2.9e-16 Score=175.56 Aligned_cols=234 Identities=12% Similarity=0.112 Sum_probs=134.8
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEcccccccc--ccccccCCCCCcEEeecCCCCCcccCccccCCccccEEee
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRT--LPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDI 669 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 669 (1112)
+.+++|++++|.+...+..+..+++|++|+|++|.+.. +|..+..+++|++|++++|......|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 66777777777776666566677777777777777652 6666777777777777777433356666777777777777
Q ss_pred cCCCccc--cCCCCCCCCCCCCccCeeee-ccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCcc-ccCc
Q 047598 670 KGANLLR--EMPLGMKELKNLRTLSNFIV-GKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKE-NLKT 745 (1112)
Q Consensus 670 ~~~~~l~--~lp~~i~~l~~L~~L~~~~~-~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~-~L~~ 745 (1112)
++|..+. .+|..+..+++|++|++.++ .... ...+..+..++ +|+.
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~------------------------------~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE------------------------------KHVQVAVAHVSETITQ 199 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH------------------------------HHHHHHHHHSCTTCCE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh------------------------------HHHHHHHHhcccCCCE
Confidence 7773232 23333445555555554333 1100 00112233344 5555
Q ss_pred eEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCC--CCCCCccCCCCCCceeEEEEcCcCC-C-CCCCCC
Q 047598 746 LSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNG--ARFPSWLGDPLFSKMEVLKLENCWN-C-TSLPSL 821 (1112)
Q Consensus 746 L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~--~~~p~~~~~~~l~~L~~L~L~~~~~-~-~~l~~l 821 (1112)
|++++|.. .. ..+|..+.. +++|+.|++++|.. . ..++.+
T Consensus 200 L~l~~~~~----------------------------------~~~~~~l~~~~~~--~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 200 LNLSGYRK----------------------------------NLQKSDLSTLVRR--CPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp EECCSCGG----------------------------------GSCHHHHHHHHHH--CTTCSEEECTTCTTCCGGGGGGG
T ss_pred EEeCCCcc----------------------------------cCCHHHHHHHHhh--CCCCCEEeCCCCCcCCHHHHHHH
Confidence 55544420 11 112333332 67888888888873 3 234467
Q ss_pred CCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCC-CccceEeEecCCC
Q 047598 822 GLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIF-PRLHKLSIMECPK 900 (1112)
Q Consensus 822 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-p~L~~L~l~~c~~ 900 (1112)
+.+++|+.|++++|..+........ ..+++|+.|+++++ +.. ..+..+ .+|..|++++ |+
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~--i~~-----------~~~~~l~~~l~~L~l~~-n~ 304 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPETLLEL-----GEIPTLKTLQVFGI--VPD-----------GTLQLLKEALPHLQINC-SH 304 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGGGG-----GGCTTCCEEECTTS--SCT-----------TCHHHHHHHSTTSEESC-CC
T ss_pred hCCCCCCEeeCCCCCCCCHHHHHHH-----hcCCCCCEEeccCc--cCH-----------HHHHHHHhhCcceEEec-cc
Confidence 7888888888888863332211111 12788888888875 111 011122 2355666755 78
Q ss_pred CCCCCCCCCC
Q 047598 901 LSGKLPELLP 910 (1112)
Q Consensus 901 L~~~~p~~~~ 910 (1112)
+++..|..+.
T Consensus 305 l~~~~~~~~~ 314 (336)
T 2ast_B 305 FTTIARPTIG 314 (336)
T ss_dssp SCCTTCSSCS
T ss_pred CccccCCccc
Confidence 8877776554
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=3.6e-14 Score=153.82 Aligned_cols=200 Identities=18% Similarity=0.116 Sum_probs=143.3
Q ss_pred hccCCCcceeccccccCCcccccccccccccccccCCcccEEEeccccccccc-ccccCCCcCcEEEccccccccccccc
Q 047598 556 FYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPEST 634 (1112)
Q Consensus 556 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~~i 634 (1112)
+.++++++.+.+.++. + ..++... .+.+++|+|++|.+..++ ..|..+++|++|+|++|.+..+|..
T Consensus 6 ~~~l~~l~~l~~~~~~-------l-~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-------L-TALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73 (290)
T ss_dssp EECSTTCCEEECTTSC-------C-SSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred ccccCCccEEECCCCC-------C-CcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence 3456677777665542 1 2233332 268999999999998775 6799999999999999999988765
Q ss_pred cCCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCC-CCCCCCCCCCccCeeeeccCCcccCccccccccc
Q 047598 635 NSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMP-LGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKF 713 (1112)
Q Consensus 635 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~ 713 (1112)
+.+++|++|++++| .+..+|..+..+++|++|++++|. +..+| ..+..+++|+.|++.++.....+.
T Consensus 74 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~---------- 141 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPP---------- 141 (290)
T ss_dssp SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCT----------
T ss_pred CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccCh----------
Confidence 88999999999998 788999999999999999999998 55665 458888888888876654332211
Q ss_pred cCCeeEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCC
Q 047598 714 LGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFP 793 (1112)
Q Consensus 714 L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p 793 (1112)
..+..+++ |+.|++++|....+|
T Consensus 142 ---------------------~~~~~l~~------------------------------------L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 142 ---------------------GLLTPTPK------------------------------------LEKLSLANNNLTELP 164 (290)
T ss_dssp ---------------------TTTTTCTT------------------------------------CCEEECTTSCCSCCC
T ss_pred ---------------------hhcccccC------------------------------------CCEEECCCCcCCccC
Confidence 11122233 444444455555555
Q ss_pred CccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEEecCCCC
Q 047598 794 SWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELTIQGLTK 837 (1112)
Q Consensus 794 ~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~ 837 (1112)
..... .+++|+.|+|++|.+....+.+..+++|+.|+|++|+.
T Consensus 165 ~~~~~-~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 165 AGLLN-GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred HHHhc-CcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 54322 27888888888887764444677778888888888753
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=4.1e-13 Score=151.43 Aligned_cols=289 Identities=13% Similarity=0.109 Sum_probs=173.2
Q ss_pred CCcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC----
Q 047598 176 TERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV---- 251 (1112)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~---- 251 (1112)
....|+||+++++.+.+ + . . +++.|+|++|+|||||++++.+... . ..+|+.+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l-~-------~---~~v~i~G~~G~GKT~L~~~~~~~~~-----~---~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-L-R-------A---PITLVLGLRRTGKSSIIKIGINELN-----L---PYIYLDLRKFEERN 70 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-T-C-------S---SEEEEEESTTSSHHHHHHHHHHHHT-----C---CEEEEEGGGGTTCS
T ss_pred CHHHhcChHHHHHHHHH-h-c-------C---CcEEEECCCCCCHHHHHHHHHHhcC-----C---CEEEEEchhhcccc
Confidence 45679999999999998 5 2 1 4999999999999999999987642 1 2478877642
Q ss_pred -CCHHHHHHHHHHHhcC-------------CC-----C-----------CCCChHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 047598 252 -FDVLSISKALLESITR-------------KP-----C-----------HLNTLNEVQVDLKTAVDGKRFLLVLDDVWNE 301 (1112)
Q Consensus 252 -~~~~~~~~~il~~l~~-------------~~-----~-----------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 301 (1112)
.+.......+.+.+.. .. . .......+...+.+... ++++|||||++..
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~ 149 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQEL 149 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHh
Confidence 3444454444443310 00 0 12344555555554433 4999999999653
Q ss_pred Ch---hhHHHHHhcccCCCCCcEEEEEcCChhhhhh----------c-CC-CceeeCCCCChHhHHHHHHHhHhCCCCCC
Q 047598 302 DY---SLWVDLKAPLLAAAPNSKMIITTRHSHVAST----------M-GP-IKHYNLKRLLDEDCWSIFIKHAYESRSLK 366 (1112)
Q Consensus 302 ~~---~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~----------~-~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 366 (1112)
+. ..|..+...+....++.++|+|++....... . +. ...+.+.+|+.+|+.+++......... .
T Consensus 150 ~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~ 228 (357)
T 2fna_A 150 VKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-D 228 (357)
T ss_dssp GGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-C
T ss_pred hccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-C
Confidence 21 2233333333222246789999997653211 1 11 257899999999999999875421111 1
Q ss_pred CchhHHHHHHHHHhhcCCchHHHHHHhhhhcCC-CHHHHHHH-HhccccCCCCCCCchHHHH-HHhc--CCchHHHHHHh
Q 047598 367 AHQISELFRKKVVGKCGGLPLAAKSLGGLLRTT-RCDLWEDI-LDSKIWDLPQQSGILPVLR-LSYH--HLPSYLKRCFA 441 (1112)
Q Consensus 367 ~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~w~~~-l~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cfl 441 (1112)
... ...|++.|+|+|+++..++..+... +...|..- .+... ..+...+. +.++ .|++..+..+.
T Consensus 229 ~~~-----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~l~~~~~~~l~ 297 (357)
T 2fna_A 229 FKD-----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK------KLILKEFENFLHGREIARKRYLNIMR 297 (357)
T ss_dssp CCC-----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------HHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCc-----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH------HHHHHHHHHHhhccccccHHHHHHHH
Confidence 111 1789999999999999998776432 33333221 11100 00111121 2221 68889999999
Q ss_pred HhhcCCCCceechHHHHHHHH-hCCcccccCCCchHHHHHHHHHHHHhhCCccccccCCCccce-echhHHHH
Q 047598 442 YCAIFPKDYEFYEKELVFLWI-GGGIIRQSKNNEQLEDLGSQCFHDLVSRSIFQPSSRNSCKFV-MHDLVHDL 512 (1112)
Q Consensus 442 ~~a~fp~~~~i~~~~li~~Wi-a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~-~H~lv~~~ 512 (1112)
.+|+ +. +...+....- ..|. .........+++.|++.++|.... ..|+ .|++++++
T Consensus 298 ~la~---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~ 355 (357)
T 2fna_A 298 TLSK---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLA 355 (357)
T ss_dssp HHTT---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHH
T ss_pred HHHc---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHh
Confidence 9998 21 3444432210 0110 011244678899999999998653 2465 57888775
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=3e-14 Score=156.12 Aligned_cols=193 Identities=17% Similarity=0.212 Sum_probs=142.9
Q ss_pred cCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCC
Q 047598 558 QTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSL 637 (1112)
Q Consensus 558 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L 637 (1112)
++++|+.|.+.++. +. .+ + .+..+++|++|+|++|.+..++. +..+++|++|+|++|.+..+| .+..+
T Consensus 39 ~l~~L~~L~l~~~~-------i~-~l-~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l 106 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-------VT-TI-E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGL 106 (308)
T ss_dssp HHHTCCEEECTTSC-------CC-CC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred HcCCcCEEEeeCCC-------cc-Cc-h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCC
Confidence 45677777776543 11 11 1 36778999999999999988877 899999999999999998886 68899
Q ss_pred CCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCe
Q 047598 638 LNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGE 717 (1112)
Q Consensus 638 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~ 717 (1112)
++|++|++++| .+..+|. +..+++|++|++++|. +..+|. ++.+++|+.|++.++.....+.
T Consensus 107 ~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-------------- 168 (308)
T 1h6u_A 107 QSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP-------------- 168 (308)
T ss_dssp TTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG--------------
T ss_pred CCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChh--------------
Confidence 99999999998 6777775 8899999999999998 556655 8888899998887665433211
Q ss_pred eEEecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccC
Q 047598 718 LCISGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLG 797 (1112)
Q Consensus 718 l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 797 (1112)
+..+++|+.|++++|.... +..+..+++|+.|++++|....++. +.
T Consensus 169 -------------------l~~l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~ 214 (308)
T 1h6u_A 169 -------------------LANLSKLTTLKADDNKISD--------------ISPLASLPNLIEVHLKNNQISDVSP-LA 214 (308)
T ss_dssp -------------------GTTCTTCCEEECCSSCCCC--------------CGGGGGCTTCCEEECTTSCCCBCGG-GT
T ss_pred -------------------hcCCCCCCEEECCCCccCc--------------ChhhcCCCCCCEEEccCCccCcccc-cc
Confidence 2344566777776665311 1114456778888888888777774 44
Q ss_pred CCCCCceeEEEEcCcCCCC
Q 047598 798 DPLFSKMEVLKLENCWNCT 816 (1112)
Q Consensus 798 ~~~l~~L~~L~L~~~~~~~ 816 (1112)
. +++|+.|+|++|.+..
T Consensus 215 ~--l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 215 N--TSNLFIVTLTNQTITN 231 (308)
T ss_dssp T--CTTCCEEEEEEEEEEC
T ss_pred C--CCCCCEEEccCCeeec
Confidence 3 8999999999998643
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=8.1e-14 Score=149.93 Aligned_cols=128 Identities=23% Similarity=0.357 Sum_probs=97.7
Q ss_pred hccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEcccccccccccc-c
Q 047598 556 FYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPES-T 634 (1112)
Q Consensus 556 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~-i 634 (1112)
...+++++.+.+.++.. . . + ..+..+++|++|++++|.+..++ .+..+++|++|+|++|.+..+|.. +
T Consensus 37 ~~~l~~L~~L~l~~~~i-------~-~-~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDI-------K-S-V-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp HHHHTTCCEEECTTSCC-------C-C-C-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccccceeeeeeCCCCc-------c-c-c-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHh
Confidence 34566777777765431 1 1 1 23678899999999999998865 789999999999999999988765 6
Q ss_pred cCCCCCcEEeecCCCCCcccCc-cccCCccccEEeecCCCccccCCCC-CCCCCCCCccCeeee
Q 047598 635 NSLLNLEILILRNCSRLKKLPS-KMRNLINLHHLDIKGANLLREMPLG-MKELKNLRTLSNFIV 696 (1112)
Q Consensus 635 ~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~ 696 (1112)
+.+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|++.++
T Consensus 106 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 106 DKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCC
Confidence 89999999999998 5666655 47899999999999998 5555543 466666666655443
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=5.2e-14 Score=154.79 Aligned_cols=204 Identities=18% Similarity=0.128 Sum_probs=120.0
Q ss_pred CCcccEEEecccccc-cccccc--cCCCcCcEEEccccccccc-c----ccccCCCCCcEEeecCCCCCcccCccccCCc
Q 047598 591 FKRLRVLSLQRYYIG-ELLVSF--EDLKLLRYLNLADTMIRTL-P----ESTNSLLNLEILILRNCSRLKKLPSKMRNLI 662 (1112)
Q Consensus 591 ~~~L~~L~L~~~~~~-~lp~~~--~~l~~Lr~L~Ls~n~i~~l-p----~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 662 (1112)
+++|+.|++++|.+. ..|..+ ..+++|++|+|++|.+... | ..+..+++|++|+|++|......|..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 355888888888775 445555 7788888888888877742 2 2345678888888888744334445677888
Q ss_pred cccEEeecCCCcccc--CC--CCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhcccc
Q 047598 663 NLHHLDIKGANLLRE--MP--LGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLC 738 (1112)
Q Consensus 663 ~L~~L~L~~~~~l~~--lp--~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~ 738 (1112)
+|++|++++|.+... ++ ..++.+++|++|++.++..... .......+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l----------------------------~~~~~~l~~ 221 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP----------------------------TGVCAALAA 221 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH----------------------------HHHHHHHHH
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch----------------------------HHHHHHHHh
Confidence 888888888874321 22 2246777777777665543211 011111234
Q ss_pred CccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCC
Q 047598 739 EKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSL 818 (1112)
Q Consensus 739 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l 818 (1112)
++++|+.|++++|......+ ..+..+..+++|+.|++++|....+|.++ +++|+.|+|++|.+.+ +
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p---------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~-~ 287 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVN---------PSAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNR-A 287 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCC---------SCCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCS-C
T ss_pred cCCCCCEEECCCCCCCccch---------hhHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCC-C
Confidence 45677777777665421100 11222222356666666666666666544 2566666666665543 2
Q ss_pred CCCCCCCCcceEEecCCC
Q 047598 819 PSLGLLSSLRELTIQGLT 836 (1112)
Q Consensus 819 ~~l~~l~~L~~L~L~~~~ 836 (1112)
|.+..+++|+.|+|++|.
T Consensus 288 ~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 288 PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTSCCCCSCEECSSTT
T ss_pred chhhhCCCccEEECcCCC
Confidence 445556666666666653
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.45 E-value=2e-12 Score=138.84 Aligned_cols=196 Identities=18% Similarity=0.227 Sum_probs=122.6
Q ss_pred CCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcceEEecCCCCceecCccccCCCCcccCcc
Q 047598 778 CIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQS 856 (1112)
Q Consensus 778 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 856 (1112)
..+.++++++....+|..+ .++|+.|+|++|.+....+ .++.+++|++|++++|. +..++...+.. +++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~-----l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKE-----LKN 86 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSS-----CTT
T ss_pred CCCEEEccCCCCCccCCCC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcC-----CCC
Confidence 3556777777777777654 4578888888887765444 68888888888888764 44555443332 778
Q ss_pred cceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcc-cC
Q 047598 857 LEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPN-DM 935 (1112)
Q Consensus 857 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~-~l 935 (1112)
|+.|++++. ......+..+..+++|++|++++ +++++..+..+..+++|+.++ ++++ .+..+|. .+
T Consensus 87 L~~L~l~~n---------~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~--Ls~n-~l~~~~~~~~ 153 (270)
T 2o6q_A 87 LETLWVTDN---------KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLS--LGYN-ELQSLPKGVF 153 (270)
T ss_dssp CCEEECCSS---------CCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEE--CCSS-CCCCCCTTTT
T ss_pred CCEEECCCC---------cCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEE--CCCC-cCCccCHhHc
Confidence 888888762 22223334456778888888888 677755555555555554333 3333 2334443 35
Q ss_pred CCCCCcCEEEEecCCCCcccCCC--CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccC
Q 047598 936 HRLNFLEHLRIGQCPSILSFPEE--GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCH 999 (1112)
Q Consensus 936 ~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 999 (1112)
..+++|++|++++|. +..++.. ..+++|+.|++++| ......+..+..+++|+.|++++|.
T Consensus 154 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN--QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC--cCCcCCHHHhccccCCCEEEecCCC
Confidence 667777777777774 3334432 34567777777777 3334444456667777777777764
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=2.2e-15 Score=171.79 Aligned_cols=88 Identities=19% Similarity=0.222 Sum_probs=65.1
Q ss_pred cccccCCcccEEEeccccccc-----ccccccCCCcCcEEEccccccc----cccccc-------cCCCCCcEEeecCCC
Q 047598 586 DLLPKFKRLRVLSLQRYYIGE-----LLVSFEDLKLLRYLNLADTMIR----TLPEST-------NSLLNLEILILRNCS 649 (1112)
Q Consensus 586 ~~~~~~~~L~~L~L~~~~~~~-----lp~~~~~l~~Lr~L~Ls~n~i~----~lp~~i-------~~L~~L~~L~L~~~~ 649 (1112)
..+..+++|++|+|++|.++. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n- 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN- 104 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-
Confidence 345667888888888887754 3445778888899988887554 334443 67888888888888
Q ss_pred CCcc-----cCccccCCccccEEeecCCCc
Q 047598 650 RLKK-----LPSKMRNLINLHHLDIKGANL 674 (1112)
Q Consensus 650 ~l~~-----lp~~i~~L~~L~~L~L~~~~~ 674 (1112)
.+.. +|..+..+++|++|+|++|.+
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 4443 677788888888888888874
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=1.1e-12 Score=139.20 Aligned_cols=172 Identities=19% Similarity=0.192 Sum_probs=113.2
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccC-ccccCCccccEEee
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLP-SKMRNLINLHHLDI 669 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L 669 (1112)
...++++++++.+..+|..+. .+|++|+|++|.+..++. .+.++++|++|+|++| .+..++ ..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 356778888888888887765 588889999888887654 5788888999999888 454444 45788888899988
Q ss_pred cCCCccccCCC-CCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEE
Q 047598 670 KGANLLREMPL-GMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSL 748 (1112)
Q Consensus 670 ~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 748 (1112)
++|. +..+|. .++.+++|++|++.++.....+. ..+..+++|+
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------------------~~~~~l~~L~---- 134 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPS-------------------------------GVFDRLTKLK---- 134 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------------------------TTTTTCTTCC----
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCcCCCcCh-------------------------------hHhccCCccc----
Confidence 8888 445543 36677777777666554322210 0112222333
Q ss_pred EeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCC-ccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCC
Q 047598 749 EWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPS-WLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSS 826 (1112)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 826 (1112)
.|++++|....+|. .+.. +++|+.|+|++|.+....+ .+..+++
T Consensus 135 --------------------------------~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 135 --------------------------------ELRLNTNQLQSIPAGAFDK--LTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp --------------------------------EEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred --------------------------------EEECcCCcCCccCHHHcCc--CcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 33334444444444 2333 6778888888877665444 5777788
Q ss_pred cceEEecCCC
Q 047598 827 LRELTIQGLT 836 (1112)
Q Consensus 827 L~~L~L~~~~ 836 (1112)
|+.|+|++|+
T Consensus 181 L~~L~l~~N~ 190 (251)
T 3m19_A 181 LQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSCC
T ss_pred CCEEEeeCCc
Confidence 8888887764
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=152.15 Aligned_cols=202 Identities=17% Similarity=0.166 Sum_probs=110.8
Q ss_pred CCceeEEEEcCcCCCCCCC-CC--CCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCC
Q 047598 801 FSKMEVLKLENCWNCTSLP-SL--GLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKG 877 (1112)
Q Consensus 801 l~~L~~L~L~~~~~~~~l~-~l--~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 877 (1112)
+++|++|+|++|.+.+..| .+ +.+++|++|++++|......+. +...
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-------------~~~~----------------- 139 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-------------LAEL----------------- 139 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-------------HHHH-----------------
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-------------hHHH-----------------
Confidence 5679999999998877666 44 8889999999998754321110 0000
Q ss_pred CCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcc--cC--cccCCCCCCcCEEEEecCCCCc
Q 047598 878 NDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLE--AL--PNDMHRLNFLEHLRIGQCPSIL 953 (1112)
Q Consensus 878 ~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~--~l--p~~l~~l~~L~~L~L~~~~~l~ 953 (1112)
.+..+++|++|++++ |++++..|..+..++.|+.++ ++++.... .+ +..+..+++|++|++++|.. +
T Consensus 140 -----~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~--Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~ 210 (310)
T 4glp_A 140 -----QQWLKPGLKVLSIAQ-AHSPAFSCEQVRAFPALTSLD--LSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-E 210 (310)
T ss_dssp -----HTTBCSCCCEEEEEC-CSSCCCCTTSCCCCTTCCEEE--CCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-C
T ss_pred -----HhhhccCCCEEEeeC-CCcchhhHHHhccCCCCCEEE--CCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-C
Confidence 001344555555555 344433333333333332211 22221110 01 11224566777777777743 3
Q ss_pred ccCCC-----CCCCCCCeEEEcCCcccccccccccCCCC---CCcCEEEEcccCCccccccCcccccccCCCCccEEEec
Q 047598 954 SFPEE-----GFPTNLASLVIGGDVKMYKGLIQWGLHRL---TALRRLEIDGCHDDEVECFPNEEMGVMLPSSLTHLTIA 1025 (1112)
Q Consensus 954 ~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~l---~~L~~L~l~~n~~~~l~~l~~~~~~~~~~~sL~~L~l~ 1025 (1112)
.++.. +.+++|+.|++++| ...+..|..+..+ ++|++|++++|. ++.+|...
T Consensus 211 ~l~~~~~~l~~~l~~L~~L~Ls~N--~l~~~~p~~~~~~~~~~~L~~L~Ls~N~---l~~lp~~~--------------- 270 (310)
T 4glp_A 211 TPTGVCAALAAAGVQPHSLDLSHN--SLRATVNPSAPRCMWSSALNSLNLSFAG---LEQVPKGL--------------- 270 (310)
T ss_dssp CHHHHHHHHHHHTCCCSSEECTTS--CCCCCCCSCCSSCCCCTTCCCEECCSSC---CCSCCSCC---------------
T ss_pred chHHHHHHHHhcCCCCCEEECCCC--CCCccchhhHHhccCcCcCCEEECCCCC---CCchhhhh---------------
Confidence 33221 23466677777766 3333333334443 577777777765 33333211
Q ss_pred CCCCCCcCCCCCCCCeEEeecCCCCCcCCCCCCCCCccEEEEccCcc
Q 047598 1026 GFKKLKKLSLMTSLEYLWIKNCPNLASFPELGLPSSLTQLYIDHCPL 1072 (1112)
Q Consensus 1026 ~~~~L~~l~~l~~L~~L~ls~c~~l~~lp~~~~~~~L~~L~l~~c~~ 1072 (1112)
+++|++|++++| .++.+|.+..+++|+.|++++|+.
T Consensus 271 ----------~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 271 ----------PAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ----------CSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTTT
T ss_pred ----------cCCCCEEECCCC-cCCCCchhhhCCCccEEECcCCCC
Confidence 367888888888 445556666778888888888865
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=1.5e-13 Score=149.09 Aligned_cols=104 Identities=18% Similarity=0.232 Sum_probs=80.6
Q ss_pred cccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEE
Q 047598 588 LPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHL 667 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 667 (1112)
+..++.|+.|++++|.+..++ .+..+++|++|+|++|.+..++. +.++++|++|++++| .+..+|. +..+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEE
Confidence 345678888899888888775 47888889999999988888876 888899999999887 6777665 8888889999
Q ss_pred eecCCCccccCCCCCCCCCCCCccCeeeec
Q 047598 668 DIKGANLLREMPLGMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 668 ~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~ 697 (1112)
++++|. +..+ ..+..+++|+.|++.++.
T Consensus 118 ~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 118 SLEHNG-ISDI-NGLVHLPQLESLYLGNNK 145 (291)
T ss_dssp ECTTSC-CCCC-GGGGGCTTCCEEECCSSC
T ss_pred ECCCCc-CCCC-hhhcCCCCCCEEEccCCc
Confidence 988887 4444 346667777777665543
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=1.3e-15 Score=173.70 Aligned_cols=270 Identities=15% Similarity=0.113 Sum_probs=155.8
Q ss_pred cccEEEecccccccccccccCCCcCcEEEcccccccc-----ccccccCCCCCcEEeecCCCCCc----ccCccc-----
Q 047598 593 RLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRT-----LPESTNSLLNLEILILRNCSRLK----KLPSKM----- 658 (1112)
Q Consensus 593 ~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i----- 658 (1112)
.|+...++...+..++..+..+++|++|+|++|.+.. ++..+..+++|++|+|++| .+. .+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHH
Confidence 3444445555566778888899999999999998874 4556889999999999997 333 345444
Q ss_pred --cCCccccEEeecCCCccc----cCCCCCCCCCCCCccCeeeeccCCc-ccCccc-cccccccCCeeEEecccCCCChh
Q 047598 659 --RNLINLHHLDIKGANLLR----EMPLGMKELKNLRTLSNFIVGKGEA-ISGLED-LKNLKFLGGELCISGLENVNDSQ 730 (1112)
Q Consensus 659 --~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~~~~~~~~~~-~~~l~~-l~~L~~L~~~l~i~~l~~~~~~~ 730 (1112)
..+++|++|+|++|.+.. .+|..+..+++|++|++.++..... +..+.. +..+...
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~---------------- 152 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN---------------- 152 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhh----------------
Confidence 789999999999998544 3666788889999998877654321 001110 1111000
Q ss_pred hhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCC------CCCCccCCCCCCce
Q 047598 731 KVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGA------RFPSWLGDPLFSKM 804 (1112)
Q Consensus 731 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~------~~p~~~~~~~l~~L 804 (1112)
.. -...++|+.|++++|...... .......+..+++|+.|.+.+|... ..|.++.. +++|
T Consensus 153 -~~---~~~~~~L~~L~L~~n~l~~~~--------~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~--~~~L 218 (386)
T 2ca6_A 153 -KK---AKNAPPLRSIICGRNRLENGS--------MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY--CQEL 218 (386)
T ss_dssp -HH---HHTCCCCCEEECCSSCCTGGG--------HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG--CTTC
T ss_pred -hh---cccCCCCcEEECCCCCCCcHH--------HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc--CCCc
Confidence 00 001157777777766542110 0111122333456777777776554 12324433 6777
Q ss_pred eEEEEcCcCCC----CCCC-CCCCCCCcceEEecCCCCcee----cCccccCCCCcccCcccceeecCCCCccccccccc
Q 047598 805 EVLKLENCWNC----TSLP-SLGLLSSLRELTIQGLTKLKS----IGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNI 875 (1112)
Q Consensus 805 ~~L~L~~~~~~----~~l~-~l~~l~~L~~L~L~~~~~l~~----i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 875 (1112)
+.|+|++|.+. ..+| .+..+++|+.|+|++|..-.. ++..+.. ..+++|+.|+++++.--.. ..
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~----~~~~~L~~L~L~~n~i~~~-g~-- 291 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK----LENIGLQTLRLQYNEIELD-AV-- 291 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT----CSSCCCCEEECCSSCCBHH-HH--
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh----ccCCCeEEEECcCCcCCHH-HH--
Confidence 88888777763 3333 466777788888877653221 1111100 1156777777776321100 00
Q ss_pred CCCCcCCcc-cCCCccceEeEecCCCCCC
Q 047598 876 KGNDHADRV-EIFPRLHKLSIMECPKLSG 903 (1112)
Q Consensus 876 ~~~~~~~~~-~~~p~L~~L~l~~c~~L~~ 903 (1112)
...+..+ ..+|+|++|++++ |.+++
T Consensus 292 --~~l~~~l~~~l~~L~~L~l~~-N~l~~ 317 (386)
T 2ca6_A 292 --RTLKTVIDEKMPDLLFLELNG-NRFSE 317 (386)
T ss_dssp --HHHHHHHHHHCTTCCEEECTT-SBSCT
T ss_pred --HHHHHHHHhcCCCceEEEccC-CcCCc
Confidence 0112222 3467788888777 45654
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=2.2e-13 Score=162.14 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=72.2
Q ss_pred cccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEE
Q 047598 588 LPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHL 667 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 667 (1112)
+..++.|+.|++++|.+..+| .+..|++|++|+|++|.+..+|. ++.+++|++|+|++| .+..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 345667777777777777765 47777788888888887777765 777788888888877 566665 47777788888
Q ss_pred eecCCCccccCCCCCCCCCCCCccCeeee
Q 047598 668 DIKGANLLREMPLGMKELKNLRTLSNFIV 696 (1112)
Q Consensus 668 ~L~~~~~l~~lp~~i~~l~~L~~L~~~~~ 696 (1112)
+|++|. +..+| .+..+++|+.|++..+
T Consensus 115 ~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 115 SLEHNG-ISDIN-GLVHLPQLESLYLGNN 141 (605)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCSEEECCSS
T ss_pred EecCCC-CCCCc-cccCCCccCEEECCCC
Confidence 887777 44443 3666666666665544
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=7.4e-13 Score=155.61 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=124.4
Q ss_pred cccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCC
Q 047598 593 RLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGA 672 (1112)
Q Consensus 593 ~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~ 672 (1112)
+|++|+|++|.++.+|..+. ++|++|+|++|.++.+| ..+++|++|+|++| .+..+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 78888888888888887663 68888888888888888 45788888888887 6666887 655 8888888888
Q ss_pred CccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeCC
Q 047598 673 NLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWGS 752 (1112)
Q Consensus 673 ~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 752 (1112)
. +..+|. .+++|+.|++.+|.+...+. .+++|+.|++++|.
T Consensus 131 ~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----------------------------------~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYINADNNQLTMLPE-----------------------------------LPTSLEVLSVRNNQ 171 (571)
T ss_dssp C-CSCCCC---CCTTCCEEECCSSCCSCCCC-----------------------------------CCTTCCEEECCSSC
T ss_pred c-CCCCCC---cCccccEEeCCCCccCcCCC-----------------------------------cCCCcCEEECCCCC
Confidence 7 555776 57778888776665433221 12356666666554
Q ss_pred CCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCce-------eEEEEcCcCCCCCCCCCCCCC
Q 047598 753 QFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKM-------EVLKLENCWNCTSLPSLGLLS 825 (1112)
Q Consensus 753 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~~l~~l~ 825 (1112)
... +..+. ++|+.|++++|....+|. +. .+| +.|+|++|.+....+.+..++
T Consensus 172 L~~--------------lp~l~--~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~ 230 (571)
T 3cvr_A 172 LTF--------------LPELP--ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRITHIPENILSLD 230 (571)
T ss_dssp CSC--------------CCCCC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSC
T ss_pred CCC--------------cchhh--CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcceecCHHHhcCC
Confidence 311 11122 667777777777777776 42 255 888888887764333577788
Q ss_pred CcceEEecCCCCceecCc
Q 047598 826 SLRELTIQGLTKLKSIGS 843 (1112)
Q Consensus 826 ~L~~L~L~~~~~l~~i~~ 843 (1112)
+|+.|+|++|.....++.
T Consensus 231 ~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp TTEEEECCSSSCCHHHHH
T ss_pred CCCEEEeeCCcCCCcCHH
Confidence 888888888766555443
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.37 E-value=4.8e-14 Score=157.52 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=101.2
Q ss_pred CCcceeccccccCCcccccccccccccccccCCcccEEEeccccccc--ccccccCCCcCcEEEccccccc-cccccccC
Q 047598 560 ENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGE--LLVSFEDLKLLRYLNLADTMIR-TLPESTNS 636 (1112)
Q Consensus 560 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--lp~~~~~l~~Lr~L~Ls~n~i~-~lp~~i~~ 636 (1112)
.+++.+.+.++. +... ++. +..+++|++|++++|.+.. +|..+..+++|++|+|++|.+. ..|..++.
T Consensus 70 ~~l~~L~l~~n~-------l~~~-~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 70 QGVIAFRCPRSF-------MDQP-LAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp TTCSEEECTTCE-------ECSC-CCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred ccceEEEcCCcc-------cccc-chh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 678888776653 2222 222 4578999999999999854 7778899999999999999987 67888999
Q ss_pred CCCCcEEeecCCCCCc--ccCccccCCccccEEeecCC-Ccccc-CCCCCCCCC-CCCccCeeee
Q 047598 637 LLNLEILILRNCSRLK--KLPSKMRNLINLHHLDIKGA-NLLRE-MPLGMKELK-NLRTLSNFIV 696 (1112)
Q Consensus 637 L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~L~~~-~~l~~-lp~~i~~l~-~L~~L~~~~~ 696 (1112)
+++|++|++++|..+. .+|..+..+++|++|++++| .+... +|..+..++ +|++|++.++
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 9999999999996666 37777889999999999999 63222 555677888 8888887665
No 105
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.36 E-value=7.4e-11 Score=134.46 Aligned_cols=296 Identities=13% Similarity=-0.014 Sum_probs=181.0
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccC-CCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKD-FKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++||+.+++++..++...- .....+.+.|+|++|+||||+|+.+++........ +.-...+|+.+....+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~----~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL----RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT----SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH----cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 679999999999999885411 12345688999999999999999999865211000 0013467888888888889
Q ss_pred HHHHHHHHhcCCCCC-CCChHHHHHHHHHHh--CCCcEEEEEeCCCCCChh--hHHHH---HhcccCC--CCCcEEEEEc
Q 047598 257 ISKALLESITRKPCH-LNTLNEVQVDLKTAV--DGKRFLLVLDDVWNEDYS--LWVDL---KAPLLAA--APNSKMIITT 326 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~l---~~~l~~~--~~gs~iivTT 326 (1112)
+...++.+++..... .....+....+...+ .+++.+||||+++..... ..+.+ ....... ..+..+|+||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 999999999764432 233556566666666 456899999999653211 11222 2212111 3466788888
Q ss_pred CChhhhhhc-----C--CCceeeCCCCChHhHHHHHHHhHhC--CCCCCCchhHHHHHHHHHhhcC---Cch-HHHHHHh
Q 047598 327 RHSHVASTM-----G--PIKHYNLKRLLDEDCWSIFIKHAYE--SRSLKAHQISELFRKKVVGKCG---GLP-LAAKSLG 393 (1112)
Q Consensus 327 R~~~v~~~~-----~--~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~~i~~~c~---glP-lai~~~~ 393 (1112)
+.......+ . ....+.+.+++.++..+++...+.. ......+ +..+.|++.++ |.| .|+.++.
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP----DVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS----SHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH----HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 766322111 1 1147899999999999999887532 1111112 24566777777 999 3333333
Q ss_pred hhhc-----C--C-CHHHHHHHHhccccCCCCCCCchHHHHHHhcCCchHHHHHHhHhh-cCCCCceechHHHHHHHH--
Q 047598 394 GLLR-----T--T-RCDLWEDILDSKIWDLPQQSGILPVLRLSYHHLPSYLKRCFAYCA-IFPKDYEFYEKELVFLWI-- 462 (1112)
Q Consensus 394 ~~l~-----~--~-~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a-~fp~~~~i~~~~li~~Wi-- 462 (1112)
.+.. + . +.+.+..++... ....+.-++..|+.+.+..++.++ ++.....+....+.+...
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEI---------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHH---------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 2221 1 2 666777666542 123456678899999888877776 443223444443333321
Q ss_pred --hCCcccccCCCchHHHHHHHHHHHHhhCCccccc
Q 047598 463 --GGGIIRQSKNNEQLEDLGSQCFHDLVSRSIFQPS 496 (1112)
Q Consensus 463 --a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 496 (1112)
..| +. ......+..+++.|...++++..
T Consensus 322 ~~~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLG-LE-----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTT-CC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcC-CC-----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 122 11 11235677889999999998864
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=5.5e-13 Score=142.15 Aligned_cols=100 Identities=18% Similarity=0.198 Sum_probs=63.2
Q ss_pred cCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEee
Q 047598 590 KFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDI 669 (1112)
Q Consensus 590 ~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L 669 (1112)
.+..+..++++++.+..++ .+..+++|++|++++|.+..+| .++.+++|++|+|++| .+..+|. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 3455666666666666665 5666777777777777777766 5667777777777776 5666665 677777777777
Q ss_pred cCCCccccCCCCCCCCCCCCccCeeee
Q 047598 670 KGANLLREMPLGMKELKNLRTLSNFIV 696 (1112)
Q Consensus 670 ~~~~~l~~lp~~i~~l~~L~~L~~~~~ 696 (1112)
++|. +..+|... . ++|+.|++.++
T Consensus 93 ~~N~-l~~l~~~~-~-~~L~~L~L~~N 116 (263)
T 1xeu_A 93 NRNR-LKNLNGIP-S-ACLSRLFLDNN 116 (263)
T ss_dssp CSSC-CSCCTTCC-C-SSCCEEECCSS
T ss_pred CCCc-cCCcCccc-c-CcccEEEccCC
Confidence 7776 44444322 2 45555544443
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=1.2e-12 Score=132.96 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=52.2
Q ss_pred CCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeec
Q 047598 591 FKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIK 670 (1112)
Q Consensus 591 ~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~ 670 (1112)
+++|+.|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|......|..++.+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 344555555555555554 4555555555555555444332 44555555555555552222244445555555555555
Q ss_pred CCCccccCCCCCCCCCCCCccCeeee
Q 047598 671 GANLLREMPLGMKELKNLRTLSNFIV 696 (1112)
Q Consensus 671 ~~~~l~~lp~~i~~l~~L~~L~~~~~ 696 (1112)
+|.+....|..++.+++|++|++.++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCC
Confidence 55533334444555555555555444
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.31 E-value=3e-11 Score=128.11 Aligned_cols=172 Identities=20% Similarity=0.214 Sum_probs=108.9
Q ss_pred CceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCC-CCCCCCCcceEEecCCCCceecCccccCCCCcccCccc
Q 047598 779 IKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLP-SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSL 857 (1112)
Q Consensus 779 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L 857 (1112)
.+.+++.++....+|..+ .++++.|+|++|.+....+ .++.+++|++|+|++|. +..++...+.. +++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-----l~~L 85 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGI----PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDD-----LTEL 85 (251)
T ss_dssp GTEEECTTCCCSSCCSCC----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT-----CTTC
T ss_pred CeEEecCCCCccccCCCC----CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhcc-----CCcC
Confidence 456777777777788765 4688999999988776555 68888999999998864 33333322221 6777
Q ss_pred ceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCCCCCCCCCCCCCCcceeEEeEEEEeccCCcccCcccCCC
Q 047598 858 EILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECPKLSGKLPELLPSLETLVVATFVIANCEKLEALPNDMHR 937 (1112)
Q Consensus 858 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~~~~L~~L~~~~L~~~~~~~l~~lp~~l~~ 937 (1112)
+.|++++. ......+..+..+++|++|++++ |++++..+. .+..
T Consensus 86 ~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~--------------------------~~~~ 129 (251)
T 3m19_A 86 GTLGLANN---------QLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSG--------------------------VFDR 129 (251)
T ss_dssp CEEECTTS---------CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT--------------------------TTTT
T ss_pred CEEECCCC---------cccccChhHhcccCCCCEEEcCC-CcCCCcChh--------------------------Hhcc
Confidence 77777762 22223334455677777777777 566532222 2345
Q ss_pred CCCcCEEEEecCCCCcccCCC--CCCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccC
Q 047598 938 LNFLEHLRIGQCPSILSFPEE--GFPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCH 999 (1112)
Q Consensus 938 l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 999 (1112)
+++|++|+|++|. +..++.. +.+++|+.|+|++| ......+..+..+++|+.|++++|.
T Consensus 130 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 130 LTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN--QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC--cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 6667777777663 3344432 34566777777776 3334444567777888888888875
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=1.2e-11 Score=127.70 Aligned_cols=97 Identities=19% Similarity=0.317 Sum_probs=71.0
Q ss_pred cEEEecccccccccccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCccc-CccccCCccccEEeecCC
Q 047598 595 RVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKL-PSKMRNLINLHHLDIKGA 672 (1112)
Q Consensus 595 ~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~ 672 (1112)
+.++++++.++.+|..+. .+|++|+|++|.|..+|. .|..+++|++|+|++| .+..+ |..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 567888888888887665 578888888888887765 6788888888888887 45444 677888888888888888
Q ss_pred CccccCCCC-CCCCCCCCccCeee
Q 047598 673 NLLREMPLG-MKELKNLRTLSNFI 695 (1112)
Q Consensus 673 ~~l~~lp~~-i~~l~~L~~L~~~~ 695 (1112)
. +..+|.. +..+++|+.|++.+
T Consensus 91 ~-l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 91 K-ITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCS
T ss_pred c-CCccCHhHccCCCCCCEEECCC
Confidence 7 5566654 45555555555444
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.30 E-value=5e-12 Score=148.59 Aligned_cols=187 Identities=18% Similarity=0.148 Sum_probs=128.4
Q ss_pred CcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCC
Q 047598 561 NLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNL 640 (1112)
Q Consensus 561 ~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L 640 (1112)
+++.|.+.++. +. .++... +++|++|+|++|.++.+| ..+++|++|+|++|.++.+|. +.+ +|
T Consensus 60 ~L~~L~Ls~n~-------L~-~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLN-------LS-SLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSC-------CS-CCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TC
T ss_pred CccEEEeCCCC-------CC-ccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CC
Confidence 66666665543 11 133332 267888999999888888 457889999999998888887 665 88
Q ss_pred cEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEE
Q 047598 641 EILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCI 720 (1112)
Q Consensus 641 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i 720 (1112)
++|+|++| .+..+|. .+++|++|++++|. +..+|. .+++|+.|++.+|.....|. +.
T Consensus 123 ~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~-------------- 179 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP-------------- 179 (571)
T ss_dssp CEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--------------
T ss_pred CEEECCCC-cCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch-hh--------------
Confidence 99999888 6777887 67888999998888 556776 56788888877765443322 11
Q ss_pred ecccCCCChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccC-CCCCCCCceEEEeccCCCCCCCccCCC
Q 047598 721 SGLENVNDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDK-LQPHKCIKNLTIKQYNGARFPSWLGDP 799 (1112)
Q Consensus 721 ~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~~~~~~~p~~~~~~ 799 (1112)
++|+.|++++|.... .+. . ... ......|+.|++++|....+|.++..
T Consensus 180 --------------------~~L~~L~Ls~N~L~~-lp~-~--------~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~- 228 (571)
T 3cvr_A 180 --------------------ESLEALDVSTNLLES-LPA-V--------PVRNHHSEETEIFFRCRENRITHIPENILS- 228 (571)
T ss_dssp --------------------TTCCEEECCSSCCSS-CCC-C--------C--------CCEEEECCSSCCCCCCGGGGG-
T ss_pred --------------------CCCCEEECcCCCCCc-hhh-H--------HHhhhcccccceEEecCCCcceecCHHHhc-
Confidence 356666666654311 000 0 000 01123348999999999999998876
Q ss_pred CCCceeEEEEcCcCCCCCCC
Q 047598 800 LFSKMEVLKLENCWNCTSLP 819 (1112)
Q Consensus 800 ~l~~L~~L~L~~~~~~~~l~ 819 (1112)
+++|+.|+|++|.+.+.+|
T Consensus 229 -l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 229 -LDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -SCTTEEEECCSSSCCHHHH
T ss_pred -CCCCCEEEeeCCcCCCcCH
Confidence 9999999999999876544
No 111
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=1.4e-10 Score=131.90 Aligned_cols=297 Identities=15% Similarity=-0.011 Sum_probs=180.6
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc--cCCC-CceeEEEEeCCCC-C
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA--KDFK-FDIKAWVCISDVF-D 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~~~-F~~~~wv~~~~~~-~ 253 (1112)
..++||+.+++++..++.... .....+.+.|+|++|+||||+|+.+++...... .... ....+|+.+.... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~----~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV----KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH----TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHH----cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 579999999999988775411 113345899999999999999999998642110 0011 2356788877666 7
Q ss_pred HHHHHHHHHHHhcCCCC--CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHH-HhcccCCCCCcEEEEEcCChh
Q 047598 254 VLSISKALLESITRKPC--HLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDL-KAPLLAAAPNSKMIITTRHSH 330 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~iivTTR~~~ 330 (1112)
...++..++.++..... ...........+...+..++.+|||||++......+..+ ...+.....+..+|+||+...
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 88888898888843321 223345667777888887777999999965321111122 222222226788999998753
Q ss_pred hhhhc------CCCceeeCCCCChHhHHHHHHHhHhCC-CCCCCchhHHHHHHHHHhhcC---CchH-HHHHHhhhh--c
Q 047598 331 VASTM------GPIKHYNLKRLLDEDCWSIFIKHAYES-RSLKAHQISELFRKKVVGKCG---GLPL-AAKSLGGLL--R 397 (1112)
Q Consensus 331 v~~~~------~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~---glPl-ai~~~~~~l--~ 397 (1112)
....+ .....+.+.+++.++..++|...+... .....+ ++..+.|++.|+ |.|- |+.++-.+. +
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 21111 112389999999999999999875421 111111 224566777777 8776 444333322 1
Q ss_pred ---CC-CHHHHHHHHhccccCCCCCCCchHHHHHHhcCCchHHHHHHhHhhcCCCCceechHHHHHHHHhCCcccccCCC
Q 047598 398 ---TT-RCDLWEDILDSKIWDLPQQSGILPVLRLSYHHLPSYLKRCFAYCAIFPKDYEFYEKELVFLWIGGGIIRQSKNN 473 (1112)
Q Consensus 398 ---~~-~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~Wia~g~i~~~~~~ 473 (1112)
.. +.+.+..+++... ...+.-++..|+++.+..+..++....+..+. .......-..| +.
T Consensus 253 ~~~~~i~~~~v~~~~~~~~---------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~----- 316 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE---------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK----- 316 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH---------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC-----
T ss_pred cCCCccCHHHHHHHHHHHh---------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC-----
Confidence 12 6777777766421 24566778899988888877777611101111 11111111222 11
Q ss_pred chHHHHHHHHHHHHhhCCcccccc
Q 047598 474 EQLEDLGSQCFHDLVSRSIFQPSS 497 (1112)
Q Consensus 474 ~~~~~~~~~~~~~L~~~~l~~~~~ 497 (1112)
.........+++.|..+++++...
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 112345678899999999998643
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=5.3e-12 Score=124.61 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=104.4
Q ss_pred CCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEcccccccc-ccccccCC
Q 047598 559 TENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRT-LPESTNSL 637 (1112)
Q Consensus 559 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~-lp~~i~~L 637 (1112)
.++++.|.+.++. +.....+..+..+++|++|++++|.+..+ ..+..+++|++|+|++|.+.. +|..+..+
T Consensus 23 ~~~L~~L~l~~n~-------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCK-------SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCB-------CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred cccCCEEECCCCC-------CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 3667777776653 22112234467889999999999998877 778899999999999999887 77777779
Q ss_pred CCCcEEeecCCCCCcccC--ccccCCccccEEeecCCCccccCCC----CCCCCCCCCccCeeeeccCCc
Q 047598 638 LNLEILILRNCSRLKKLP--SKMRNLINLHHLDIKGANLLREMPL----GMKELKNLRTLSNFIVGKGEA 701 (1112)
Q Consensus 638 ~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~~~~~~~~~~ 701 (1112)
++|++|++++| .+..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|++..+.....
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999999998 677766 678889999999999998 566666 688899999999888765554
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=1.3e-12 Score=155.55 Aligned_cols=188 Identities=19% Similarity=0.254 Sum_probs=141.5
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecC
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKG 671 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~ 671 (1112)
..+..+.+..+.+..++ .+..|.+|++|++++|.+..+| .++.|++|++|+|++| .+..+|. +..+++|++|+|++
T Consensus 21 ~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcC
Confidence 44555566666665554 3578899999999999999987 5899999999999998 6777776 99999999999999
Q ss_pred CCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCceEEEeC
Q 047598 672 ANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKTLSLEWG 751 (1112)
Q Consensus 672 ~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 751 (1112)
|. +..+| .+..+++|+.|++..+..... . .+..+++|+.|+|+.|
T Consensus 97 N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~--------------------------------~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 97 NK-IKDLS-SLKDLKKLKSLSLEHNGISDI-N--------------------------------GLVHLPQLESLYLGNN 141 (605)
T ss_dssp SC-CCCCT-TSTTCTTCCEEECTTSCCCCC-G--------------------------------GGGGCTTCSEEECCSS
T ss_pred CC-CCCCh-hhccCCCCCEEEecCCCCCCC-c--------------------------------cccCCCccCEEECCCC
Confidence 98 56665 688999999998876654322 1 1334557777777766
Q ss_pred CCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCCCCCCCCCCCcceEE
Q 047598 752 SQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTSLPSLGLLSSLRELT 831 (1112)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 831 (1112)
.... +..+..+++|+.|++++|....++. +.. +++|+.|+|++|.+.. ++.+..+++|+.|+
T Consensus 142 ~l~~--------------l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~--l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 142 KITD--------------ITVLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNHISD-LRALAGLKNLDVLE 203 (605)
T ss_dssp CCCC--------------CGGGGSCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCCCB-CGGGTTCTTCSEEE
T ss_pred ccCC--------------chhhcccCCCCEEECcCCcCCCchh-hcc--CCCCCEEECcCCCCCC-ChHHccCCCCCEEE
Confidence 5411 1344556778888888887776655 443 8889999999887654 57788888999999
Q ss_pred ecCCC
Q 047598 832 IQGLT 836 (1112)
Q Consensus 832 L~~~~ 836 (1112)
|++|.
T Consensus 204 L~~N~ 208 (605)
T 1m9s_A 204 LFSQE 208 (605)
T ss_dssp CCSEE
T ss_pred ccCCc
Confidence 98865
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=5.3e-12 Score=136.84 Aligned_cols=128 Identities=17% Similarity=0.213 Sum_probs=92.2
Q ss_pred ccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccC
Q 047598 557 YQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNS 636 (1112)
Q Consensus 557 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~ 636 (1112)
..+++|+.|.+.++. + ..+ ..+..+++|++|++++|.+..++. +..+++|++|+|++|.+..+|. +..
T Consensus 43 ~~l~~L~~L~l~~~~-------i-~~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~ 110 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-------I-KSV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKD 110 (291)
T ss_dssp HHHHTCCEEECTTSC-------C-CCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTT
T ss_pred hhcCcccEEEccCCC-------c-ccC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hcc
Confidence 345666777665542 1 111 126677888888888888877776 8888888888888888887754 788
Q ss_pred CCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCC
Q 047598 637 LLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGE 700 (1112)
Q Consensus 637 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~ 700 (1112)
+++|++|++++| .+..++ .+..+++|++|++++|. +..+ ..++.+++|+.|++.++....
T Consensus 111 l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 111 LKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp CTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCcccc
Confidence 888888888887 666664 47788888888888887 4555 457778888888777665433
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=1.6e-13 Score=154.53 Aligned_cols=109 Identities=12% Similarity=0.096 Sum_probs=66.3
Q ss_pred ccccCCcccEEEeccccccccc-----ccccCCC-cCcEEEccccccccc-cccccCC-----CCCcEEeecCCCCCccc
Q 047598 587 LLPKFKRLRVLSLQRYYIGELL-----VSFEDLK-LLRYLNLADTMIRTL-PESTNSL-----LNLEILILRNCSRLKKL 654 (1112)
Q Consensus 587 ~~~~~~~L~~L~L~~~~~~~lp-----~~~~~l~-~Lr~L~Ls~n~i~~l-p~~i~~L-----~~L~~L~L~~~~~l~~l 654 (1112)
++...++|++|+|++|.++..+ ..+..++ +|++|+|++|.+... +..+..+ ++|++|+|++| .+...
T Consensus 17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~ 95 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYK 95 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGS
T ss_pred HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChH
Confidence 3444555888888888776654 4566777 788888888877754 4445554 77888888887 44433
Q ss_pred C-cc----ccCC-ccccEEeecCCCccccCCC-C----CCC-CCCCCccCeeeec
Q 047598 655 P-SK----MRNL-INLHHLDIKGANLLREMPL-G----MKE-LKNLRTLSNFIVG 697 (1112)
Q Consensus 655 p-~~----i~~L-~~L~~L~L~~~~~l~~lp~-~----i~~-l~~L~~L~~~~~~ 697 (1112)
+ .. +..+ ++|++|++++|.+ ...+. . +.. .++|++|++.++.
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 3 32 3344 6788888887773 33322 1 222 2466666655543
No 116
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.26 E-value=5.9e-10 Score=127.01 Aligned_cols=297 Identities=11% Similarity=0.005 Sum_probs=184.3
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++||+.+++++..++...... ..+..+.+.|+|++|+||||+|+.+++..... .. ..++|+.++...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~--~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~---~~-~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN--PGHHYPRATLLGRPGTGKTVTLRKLWELYKDK---TT-ARFVYINGFIYRNFTAI 90 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS--TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS---CC-CEEEEEETTTCCSHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh---cC-eeEEEEeCccCCCHHHH
Confidence 57999999999999988641000 11223489999999999999999999875321 11 24677887787788889
Q ss_pred HHHHHHHhcCCCCC-CCChHHHHHHHHHHh--CCCcEEEEEeCCCCCChhhHHHHHhcccCCC----CCcEEEEEcCChh
Q 047598 258 SKALLESITRKPCH-LNTLNEVQVDLKTAV--DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAA----PNSKMIITTRHSH 330 (1112)
Q Consensus 258 ~~~il~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTTR~~~ 330 (1112)
...++..++..... .....+....+...+ .+++.+||||+++..+......+...+.... .+..||+||+...
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 99999988754322 234455555555554 3668999999998765555555554443211 4667888887764
Q ss_pred hhhhcC-------CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhc---------CCchHHHHHHh-
Q 047598 331 VASTMG-------PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKC---------GGLPLAAKSLG- 393 (1112)
Q Consensus 331 v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c---------~glPlai~~~~- 393 (1112)
...... ....+.+.+++.++..+++...+..... ......+..+.|++.+ +|.|-.+..+.
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~ 248 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILY 248 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHH
Confidence 433221 1236999999999999999887642110 0111234567788888 78765443332
Q ss_pred hhhc-----CC---CHHHHHHHHhccccCCCCCCCchHHHHHHhcCCchHHHHHHhHhhcCC---CCceechHHHHHHHH
Q 047598 394 GLLR-----TT---RCDLWEDILDSKIWDLPQQSGILPVLRLSYHHLPSYLKRCFAYCAIFP---KDYEFYEKELVFLWI 462 (1112)
Q Consensus 394 ~~l~-----~~---~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp---~~~~i~~~~li~~Wi 462 (1112)
.+.. +. +.+....+...... .. +.-.+..|+.+.+.++..++.+. .+..+....+...+-
T Consensus 249 ~a~~~a~~~~~~~i~~~~v~~~~~~~~~-----~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 249 RSAYAAQQNGRKHIAPEDVRKSSKEVLF-----GI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHSC-----CC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHhh-----hh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 2221 11 44444444433211 11 23345678888888888777654 222455566655443
Q ss_pred h----CCcccccCCCchHHHHHHHHHHHHhhCCcccccc
Q 047598 463 G----GGIIRQSKNNEQLEDLGSQCFHDLVSRSIFQPSS 497 (1112)
Q Consensus 463 a----~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~ 497 (1112)
. .|... ........++++|...++|....
T Consensus 320 ~~~~~~~~~~------~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 320 IVCEEYGERP------RVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHTTCCC------CCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHcCCCC------CCHHHHHHHHHHHHhCCCeEEee
Confidence 2 22111 11344678899999999998754
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=1.6e-13 Score=154.40 Aligned_cols=100 Identities=11% Similarity=-0.004 Sum_probs=68.6
Q ss_pred EEecccccccc-cccccCCCcCcEEEcccccccccc-----ccccCCC-CCcEEeecCCCCCccc-CccccCC-----cc
Q 047598 597 LSLQRYYIGEL-LVSFEDLKLLRYLNLADTMIRTLP-----ESTNSLL-NLEILILRNCSRLKKL-PSKMRNL-----IN 663 (1112)
Q Consensus 597 L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~n~i~~lp-----~~i~~L~-~L~~L~L~~~~~l~~l-p~~i~~L-----~~ 663 (1112)
+++++|.++.. |..+....+|++|+|++|.+...+ ..+..++ +|++|+|++| .+... +..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCC
Confidence 56788887654 444455556999999999998776 5677888 8999999998 45443 5556554 89
Q ss_pred ccEEeecCCCccccCCCC----CCCC-CCCCccCeeeec
Q 047598 664 LHHLDIKGANLLREMPLG----MKEL-KNLRTLSNFIVG 697 (1112)
Q Consensus 664 L~~L~L~~~~~l~~lp~~----i~~l-~~L~~L~~~~~~ 697 (1112)
|++|++++|.+....+.. +..+ ++|++|++.++.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 999999999843333222 2233 566666655543
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=2e-11 Score=123.97 Aligned_cols=148 Identities=12% Similarity=0.183 Sum_probs=107.0
Q ss_pred CceeEEEEEeCCCCCccchhhhccCCCcceeccccccCCcccccccccccccccccCCcccEEEeccccccc-ccccccC
Q 047598 535 ERVRHSSYVRGGYDGRSKFEVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGE-LLVSFED 613 (1112)
Q Consensus 535 ~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-lp~~~~~ 613 (1112)
..++++.+..+.... ++.+..+++|+.|.+.++.. ..+ ..+..+++|++|++++|.+.. .|..++.
T Consensus 44 ~~L~~L~l~~n~i~~---l~~l~~l~~L~~L~l~~n~~---------~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 44 NSLTYITLANINVTD---LTGIEYAHNIKDLTINNIHA---------TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HTCCEEEEESSCCSC---CTTGGGCTTCSEEEEESCCC---------SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred CCccEEeccCCCccC---hHHHhcCCCCCEEEccCCCC---------Ccc-hhhhcCCCCCEEEeECCccCcccChhhcC
Confidence 346667766654432 23566778888888776531 111 246778888888888888865 5677888
Q ss_pred CCcCcEEEcccccccc-ccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCCCCCCCCCCCccC
Q 047598 614 LKLLRYLNLADTMIRT-LPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLS 692 (1112)
Q Consensus 614 l~~Lr~L~Ls~n~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 692 (1112)
+++|++|+|++|.+.. .|..++.+++|++|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|+.|+
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLY 187 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEE
Confidence 8888888888888874 66778888888888888885477777 58888888888888887 55565 677888888888
Q ss_pred eeeecc
Q 047598 693 NFIVGK 698 (1112)
Q Consensus 693 ~~~~~~ 698 (1112)
+.++.+
T Consensus 188 l~~N~i 193 (197)
T 4ezg_A 188 AFSQTI 193 (197)
T ss_dssp ECBC--
T ss_pred eeCccc
Confidence 777654
No 119
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=1e-10 Score=133.35 Aligned_cols=296 Identities=15% Similarity=0.067 Sum_probs=175.3
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++||+.+++.+.+++...- .....+.+.|+|++|+||||||+.+++...... ..-...+|+.+....+...+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~----~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLY----REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF--LGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGG----GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHT--CSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH----cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh--cCCceEEEEECCCCCCHHHH
Confidence 679999999999999886410 023456899999999999999999998653210 00224677877666677778
Q ss_pred HHHHHHHhcCCCC-CCCChHHHHHHHHHHhC--CCcEEEEEeCCCCCC----hhhHHHHHhcccC-CCCCcEEEEEcCCh
Q 047598 258 SKALLESITRKPC-HLNTLNEVQVDLKTAVD--GKRFLLVLDDVWNED----YSLWVDLKAPLLA-AAPNSKMIITTRHS 329 (1112)
Q Consensus 258 ~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTTR~~ 329 (1112)
...++.+++.... ......+....+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 8888877765432 12234555555555553 458999999996421 2233334333321 23456778888866
Q ss_pred hhhhhcC-------CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcC---CchHHH-HHHhhhhc-
Q 047598 330 HVASTMG-------PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCG---GLPLAA-KSLGGLLR- 397 (1112)
Q Consensus 330 ~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPlai-~~~~~~l~- 397 (1112)
.....+. ....+.+.+++.++..+++...+..... ......++.+.|++.++ |.|..+ .++.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4332221 1147999999999999999886531110 11112334566777777 988743 33332221
Q ss_pred ----C--C-CHHHHHHHHhccccCCCCCCCchHHHHHHhcCCchHHHHHHhHhhcCCC-C-ceechHHHHHHH--HhC--
Q 047598 398 ----T--T-RCDLWEDILDSKIWDLPQQSGILPVLRLSYHHLPSYLKRCFAYCAIFPK-D-YEFYEKELVFLW--IGG-- 464 (1112)
Q Consensus 398 ----~--~-~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~-~-~~i~~~~li~~W--ia~-- 464 (1112)
+ . +.+.+..++... ....+.-++..+|...+..+..++.+.+ + ..+....+.+.. +++
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEI---------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHH---------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 1 1 556666655432 1234666778899888888777774322 1 123333332221 111
Q ss_pred CcccccCCCchHHHHHHHHHHHHhhCCccccc
Q 047598 465 GIIRQSKNNEQLEDLGSQCFHDLVSRSIFQPS 496 (1112)
Q Consensus 465 g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 496 (1112)
| +. .........+++.|...++++..
T Consensus 323 g-~~-----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 G-VE-----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp T-CC-----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred C-CC-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 1 11 11124466789999999999763
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=3.6e-11 Score=123.36 Aligned_cols=94 Identities=22% Similarity=0.375 Sum_probs=55.3
Q ss_pred EEEecccccccccccccCCCcCcEEEcccccccccccc-ccCCCCCcEEeecCCCCCcccCcc-ccCCccccEEeecCCC
Q 047598 596 VLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPES-TNSLLNLEILILRNCSRLKKLPSK-MRNLINLHHLDIKGAN 673 (1112)
Q Consensus 596 ~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 673 (1112)
.++++++.+..+|..+ .++|++|++++|.+..+|.. +..+++|++|++++| .+..+|.. +..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence 4556666666666544 24677777777777666553 466777777777776 45555543 4667777777777666
Q ss_pred ccccCCCC-CCCCCCCCccCe
Q 047598 674 LLREMPLG-MKELKNLRTLSN 693 (1112)
Q Consensus 674 ~l~~lp~~-i~~l~~L~~L~~ 693 (1112)
+..+|.. ++.+++|++|++
T Consensus 88 -l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 88 -LQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp -CCCCCTTTTTTCTTCCEEEC
T ss_pred -CCccCHhHhcCccCCCEEEc
Confidence 3344332 344444444443
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=2.7e-11 Score=125.15 Aligned_cols=97 Identities=12% Similarity=0.161 Sum_probs=69.7
Q ss_pred cEEEecccccccccccccCCCcCcEEEccccccccccc--cccCCCCCcEEeecCCCCCcccCc-cccCCccccEEeecC
Q 047598 595 RVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE--STNSLLNLEILILRNCSRLKKLPS-KMRNLINLHHLDIKG 671 (1112)
Q Consensus 595 ~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L~~ 671 (1112)
+++++++|.++.+|..+.. .+++|+|++|.+..++. .|..+++|++|+|++| .+..++. .|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC
Confidence 4788888888888876643 56888999888887743 3788888999999887 5666554 688888888888888
Q ss_pred CCccccCCCC-CCCCCCCCccCeee
Q 047598 672 ANLLREMPLG-MKELKNLRTLSNFI 695 (1112)
Q Consensus 672 ~~~l~~lp~~-i~~l~~L~~L~~~~ 695 (1112)
|. +..+|.. ++.+++|++|++.+
T Consensus 91 N~-l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 91 NR-LENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SC-CCCCCGGGGTTCSSCCEEECTT
T ss_pred Cc-cCccCHhHhcCCcCCCEEECCC
Confidence 87 3444432 55555555554433
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=2e-11 Score=126.12 Aligned_cols=131 Identities=16% Similarity=0.199 Sum_probs=100.0
Q ss_pred CcceeccccccCCcccccccccccccccccCCcccEEEecccccccccc-cccCCCcCcEEEcccccccccccc-ccCCC
Q 047598 561 NLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLV-SFEDLKLLRYLNLADTMIRTLPES-TNSLL 638 (1112)
Q Consensus 561 ~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~-~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L~ 638 (1112)
.++.|.+.++. +....+...|..+++|++|+|++|.++.++. .|.++++|++|+|++|.+..+|.. |..++
T Consensus 33 ~~~~L~L~~N~-------l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 105 (220)
T 2v70_A 33 YTAELRLNNNE-------FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE 105 (220)
T ss_dssp TCSEEECCSSC-------CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS
T ss_pred CCCEEEcCCCc-------CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc
Confidence 45666666553 2222234557888899999999999888764 788899999999999998877664 78899
Q ss_pred CCcEEeecCCCCCccc-CccccCCccccEEeecCCCccccCCCCCCCCCCCCccCeeeeccC
Q 047598 639 NLEILILRNCSRLKKL-PSKMRNLINLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKG 699 (1112)
Q Consensus 639 ~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 699 (1112)
+|++|+|++| .+..+ |..+..+++|++|+|++|.+....|..+..+++|+.|++.+|...
T Consensus 106 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 106 SLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999998 45544 677888999999999998854444677888889998888777643
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=2.1e-11 Score=126.02 Aligned_cols=129 Identities=23% Similarity=0.341 Sum_probs=93.4
Q ss_pred CCcceeccccccCCcccccccccccccccccCCcccEEEecccccccc-cccccCCCcCcEEEcccccccccccc-ccCC
Q 047598 560 ENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGEL-LVSFEDLKLLRYLNLADTMIRTLPES-TNSL 637 (1112)
Q Consensus 560 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L 637 (1112)
++++.|.+.++. + ..+++..|..+++|++|+|++|.+..+ |..|.++++|++|+|++|.+..+|.. |..+
T Consensus 32 ~~l~~L~l~~n~-------i-~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 32 ETITEIRLEQNT-------I-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp TTCCEEECCSSC-------C-CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCEEECCCCc-------C-CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCC
Confidence 466777766553 1 234445677788888888888888776 56788888888888888888888765 5778
Q ss_pred CCCcEEeecCCCCCccc-CccccCCccccEEeecCCCccccCCC-CCCCCCCCCccCeeeecc
Q 047598 638 LNLEILILRNCSRLKKL-PSKMRNLINLHHLDIKGANLLREMPL-GMKELKNLRTLSNFIVGK 698 (1112)
Q Consensus 638 ~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~ 698 (1112)
++|++|+|++| .+..+ |..+..+++|++|+|++|. +..+|. .+..+++|+.|++.+|..
T Consensus 104 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 104 FSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 88888888887 44444 5567788888888888887 445554 477788888887776653
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.24 E-value=1e-11 Score=132.25 Aligned_cols=105 Identities=24% Similarity=0.226 Sum_probs=78.3
Q ss_pred cccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEE
Q 047598 588 LPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHL 667 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 667 (1112)
+..+++|++|++++|.+..+| .+..+++|++|+|++|.+..+|. +..+++|++|++++| .+..+|... . ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~-~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIP-S-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCC-C-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCccc-c-CcccEE
Confidence 566778888888888887776 67778888888888888887776 788888888888887 666676533 3 788888
Q ss_pred eecCCCccccCCCCCCCCCCCCccCeeeeccC
Q 047598 668 DIKGANLLREMPLGMKELKNLRTLSNFIVGKG 699 (1112)
Q Consensus 668 ~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 699 (1112)
++++|. +..+| .++.+++|+.|++.++...
T Consensus 112 ~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 112 FLDNNE-LRDTD-SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp ECCSSC-CSBSG-GGTTCTTCCEEECTTSCCC
T ss_pred EccCCc-cCCCh-hhcCcccccEEECCCCcCC
Confidence 888887 45554 4777788888777665543
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=2.5e-11 Score=126.39 Aligned_cols=129 Identities=23% Similarity=0.346 Sum_probs=93.3
Q ss_pred CCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccc-cccCCCcCcEEEcccccccccccc-ccCC
Q 047598 560 ENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLV-SFEDLKLLRYLNLADTMIRTLPES-TNSL 637 (1112)
Q Consensus 560 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~-~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L 637 (1112)
++|+.|.+.++. + ..+.+..|..+++|++|+|++|.+..+|. .|..+++|++|+|++|.++.+|.. +..+
T Consensus 40 ~~L~~L~Ls~n~-------i-~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 111 (229)
T 3e6j_A 40 TNAQILYLHDNQ-------I-TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL 111 (229)
T ss_dssp TTCSEEECCSSC-------C-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEEcCCCc-------c-CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcc
Confidence 667777776653 1 22334557777888888888888877764 467788888888888888877654 5778
Q ss_pred CCCcEEeecCCCCCcccCccccCCccccEEeecCCCccccCCC-CCCCCCCCCccCeeeecc
Q 047598 638 LNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLREMPL-GMKELKNLRTLSNFIVGK 698 (1112)
Q Consensus 638 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~ 698 (1112)
++|++|+|++| .+..+|..+..+++|++|+|++|. +..+|. .+..+++|+.|++.+|..
T Consensus 112 ~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 112 VHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred hhhCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 88888888887 677788778888888888888887 455554 377777888777766654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=1.6e-11 Score=121.13 Aligned_cols=108 Identities=22% Similarity=0.278 Sum_probs=94.2
Q ss_pred CCcccEEEecccccc--cccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcc-cCccccCCccccEE
Q 047598 591 FKRLRVLSLQRYYIG--ELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKK-LPSKMRNLINLHHL 667 (1112)
Q Consensus 591 ~~~L~~L~L~~~~~~--~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L 667 (1112)
.+.|++|++++|.+. .+|..+..+++|++|+|++|.+..+ ..++.+++|++|++++| .+.. +|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence 478999999999998 8998899999999999999999988 78999999999999999 5555 78777789999999
Q ss_pred eecCCCccccCC--CCCCCCCCCCccCeeeeccCCc
Q 047598 668 DIKGANLLREMP--LGMKELKNLRTLSNFIVGKGEA 701 (1112)
Q Consensus 668 ~L~~~~~l~~lp--~~i~~l~~L~~L~~~~~~~~~~ 701 (1112)
++++|. +..+| ..+..+++|++|++.++.....
T Consensus 101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 101 NLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp ECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred eccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 999998 66666 6788999999998887765433
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=1.1e-11 Score=119.57 Aligned_cols=104 Identities=25% Similarity=0.323 Sum_probs=64.6
Q ss_pred ccccCCcccEEEecccccccccccccCCCcCcEEEcccccccc-ccccccCCCCCcEEeecCCCCCcccC--ccccCCcc
Q 047598 587 LLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRT-LPESTNSLLNLEILILRNCSRLKKLP--SKMRNLIN 663 (1112)
Q Consensus 587 ~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~ 663 (1112)
.+..+++|++|++++|.+..+ ..++.+++|++|+|++|.+.. +|..++.+++|++|++++| .+..+| ..++.+++
T Consensus 37 ~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~ 114 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLEN 114 (149)
T ss_dssp CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTT
T ss_pred HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCC
Confidence 455666666666666666655 556666666666666666665 5555556666666766666 455543 55666666
Q ss_pred ccEEeecCCCccccCCC----CCCCCCCCCccCe
Q 047598 664 LHHLDIKGANLLREMPL----GMKELKNLRTLSN 693 (1112)
Q Consensus 664 L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~~ 693 (1112)
|++|++++|. +..+|. .++.+++|+.|++
T Consensus 115 L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 115 LKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 6666666666 444443 3555666666554
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=2e-11 Score=121.45 Aligned_cols=130 Identities=20% Similarity=0.211 Sum_probs=94.2
Q ss_pred hccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccc-
Q 047598 556 FYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPEST- 634 (1112)
Q Consensus 556 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i- 634 (1112)
+..+.+|+.|.+.++. +. .+ +......++|++|++++|.+..+ ..+..+++|++|+|++|.+..+|+.+
T Consensus 15 ~~~~~~L~~L~l~~n~-------l~-~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-------IP-VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp EECTTSCEEEECTTSC-------CC-SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred cCCcCCceEEEeeCCC-------Cc-hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchh
Confidence 4456677777776653 11 11 22223334888888888888777 67888888888888888888887665
Q ss_pred cCCCCCcEEeecCCCCCcccCc--cccCCccccEEeecCCCccccCCCC----CCCCCCCCccCeeeec
Q 047598 635 NSLLNLEILILRNCSRLKKLPS--KMRNLINLHHLDIKGANLLREMPLG----MKELKNLRTLSNFIVG 697 (1112)
Q Consensus 635 ~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~~~~~~ 697 (1112)
+.+++|++|++++| .+..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|++..+.
T Consensus 85 ~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 78888888888887 6777776 67788888888888887 5566764 7778888888877664
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.18 E-value=5.3e-11 Score=123.93 Aligned_cols=108 Identities=28% Similarity=0.341 Sum_probs=90.1
Q ss_pred CcccEEEecccccccc-cccccCCCcCcEEEcccccccccccc-ccCCCCCcEEeecCCCCCcccCcc-ccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGEL-LVSFEDLKLLRYLNLADTMIRTLPES-TNSLLNLEILILRNCSRLKKLPSK-MRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 668 (1112)
++|++|+|++|.+..+ |..|..+++|++|+|++|.+..+|.. |..+++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 7899999999998777 56788999999999999999988765 688999999999998 66676654 67899999999
Q ss_pred ecCCCccccCCCCCCCCCCCCccCeeeeccCCc
Q 047598 669 IKGANLLREMPLGMKELKNLRTLSNFIVGKGEA 701 (1112)
Q Consensus 669 L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~ 701 (1112)
+++|. +..+|..+..+++|++|++.+|.....
T Consensus 119 Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 119 MCCNK-LTELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp CCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred ccCCc-ccccCcccccCCCCCEEECCCCcCCcc
Confidence 99998 668888888899999988877655433
No 130
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=4.8e-10 Score=118.75 Aligned_cols=196 Identities=15% Similarity=0.103 Sum_probs=120.0
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++||+..++.+..++.. + ...+.+.|+|++|+||||+|+.+++..... ..+.. ........
T Consensus 23 ~~~~g~~~~~~~l~~~l~~------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~---~~~~~------~~~~~~~~- 85 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSL------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCE---TGITA------TPCGVCDN- 85 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHH------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCT---TCSCS------SCCSCSHH-
T ss_pred HHHhCcHHHHHHHHHHHHc------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCC---CCCCC------CCCcccHH-
Confidence 4699999999999999865 1 123488999999999999999998765322 11100 00000000
Q ss_pred HHHHHHHhcC-----CCCCCCChHHHHHHHHHH-----hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcC
Q 047598 258 SKALLESITR-----KPCHLNTLNEVQVDLKTA-----VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTR 327 (1112)
Q Consensus 258 ~~~il~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 327 (1112)
...+...... ........+.. ..+.+. ..+++.+||+||++......+..+...+.....+..+|+||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp HHHHHTTCCSSEEEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred HHHHhccCCcceEEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 0000000000 00000111111 122222 235689999999987666677777776665556788999887
Q ss_pred Chhhh-hh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhh
Q 047598 328 HSHVA-ST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGL 395 (1112)
Q Consensus 328 ~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 395 (1112)
..... .. ......+.+.+++.++..+++...+........ .+..+.|++.|+|.|..+..+...
T Consensus 165 ~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 165 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 65422 11 122467899999999999999887754322111 245678999999999988876644
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=1.1e-11 Score=119.45 Aligned_cols=122 Identities=20% Similarity=0.290 Sum_probs=100.8
Q ss_pred cCCcccEEEecccccc--cccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcc-cCccccCCccccE
Q 047598 590 KFKRLRVLSLQRYYIG--ELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKK-LPSKMRNLINLHH 666 (1112)
Q Consensus 590 ~~~~L~~L~L~~~~~~--~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~ 666 (1112)
..++|+.|++++|.+. .+|..+..+++|++|++++|.+..+ ..++.+++|++|++++| .+.. +|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 3478999999999998 8898899999999999999999988 78999999999999999 5555 8887888999999
Q ss_pred EeecCCCccccCC--CCCCCCCCCCccCeeeeccCCccc----Ccccccccccc
Q 047598 667 LDIKGANLLREMP--LGMKELKNLRTLSNFIVGKGEAIS----GLEDLKNLKFL 714 (1112)
Q Consensus 667 L~L~~~~~l~~lp--~~i~~l~~L~~L~~~~~~~~~~~~----~l~~l~~L~~L 714 (1112)
|++++|. +..+| ..++.+++|++|++.+|.....+. .+..+++|+.+
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 9999999 55554 678999999999988877655432 34444454444
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.17 E-value=4.8e-11 Score=133.94 Aligned_cols=99 Identities=21% Similarity=0.267 Sum_probs=66.0
Q ss_pred cEEEecccccccccccccCCCcCcEEEcccccccccccc-cc-CCCCCcEEeecCCCCCcccC-ccccCCccccEEeecC
Q 047598 595 RVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPES-TN-SLLNLEILILRNCSRLKKLP-SKMRNLINLHHLDIKG 671 (1112)
Q Consensus 595 ~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~-i~-~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~ 671 (1112)
++++++++.+..+|..+. ..+++|+|++|.+..+|.. +. ++++|++|+|++| .+..+| ..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 467777777777776554 3577777777777776654 44 7777777777776 555555 3577777777777777
Q ss_pred CCccccCCC-CCCCCCCCCccCeeeec
Q 047598 672 ANLLREMPL-GMKELKNLRTLSNFIVG 697 (1112)
Q Consensus 672 ~~~l~~lp~-~i~~l~~L~~L~~~~~~ 697 (1112)
|. +..+|. .+..+++|+.|++.+|.
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVLLLYNNH 123 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred Cc-CCcCCHHHhCCCcCCCEEECCCCc
Confidence 77 444443 36666667666665543
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=2.7e-11 Score=148.26 Aligned_cols=116 Identities=21% Similarity=0.207 Sum_probs=100.8
Q ss_pred ccccccccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCc
Q 047598 583 VLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLI 662 (1112)
Q Consensus 583 ~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 662 (1112)
+++..+..++.|++|+|++|.+..+|..+..+++|++|+|++|.|..+|..|++|++|++|+|++| .+..+|..|++|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 456678889999999999999999998888999999999999999999999999999999999998 6779999999999
Q ss_pred cccEEeecCCCccccCCCCCCCCCCCCccCeeeeccCC
Q 047598 663 NLHHLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGE 700 (1112)
Q Consensus 663 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~ 700 (1112)
+|++|+|++|. +..+|..|+.|++|++|++.+|....
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCC
Confidence 99999999998 67899999999999999998887653
No 134
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.15 E-value=1.4e-10 Score=118.98 Aligned_cols=128 Identities=22% Similarity=0.299 Sum_probs=84.5
Q ss_pred CCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccc-cccCCCcCcEEEcccccccccccc-ccCC
Q 047598 560 ENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLV-SFEDLKLLRYLNLADTMIRTLPES-TNSL 637 (1112)
Q Consensus 560 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~-~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L 637 (1112)
++++.|.+.++. + ..++...|..+++|++|++++|.+..+|. .|..+++|++|+|++|.+..+|.. +..+
T Consensus 28 ~~l~~L~l~~n~-------l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 99 (208)
T 2o6s_A 28 AQTTYLDLETNS-------L-KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99 (208)
T ss_dssp TTCSEEECCSSC-------C-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEcCCCc-------c-CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence 456666665543 1 13344456677777777777777777664 356777777777777777766654 5677
Q ss_pred CCCcEEeecCCCCCcccCcc-ccCCccccEEeecCCCccccCCCC-CCCCCCCCccCeeeec
Q 047598 638 LNLEILILRNCSRLKKLPSK-MRNLINLHHLDIKGANLLREMPLG-MKELKNLRTLSNFIVG 697 (1112)
Q Consensus 638 ~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~ 697 (1112)
++|++|++++| .+..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++.+|.
T Consensus 100 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 100 TQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 77777777776 45555543 5677777777777776 4445544 6677777777766653
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=2.9e-11 Score=120.24 Aligned_cols=110 Identities=22% Similarity=0.246 Sum_probs=94.5
Q ss_pred cccCCcccEEEecccccccccccccCCC-cCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccc-cCCcccc
Q 047598 588 LPKFKRLRVLSLQRYYIGELLVSFEDLK-LLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKM-RNLINLH 665 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~~~~~lp~~~~~l~-~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~ 665 (1112)
+..+.+|++|++++|.+..+|. +..+. +|++|+|++|.+..+ +.++.+++|++|++++| .+..+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 5667899999999999998864 55555 999999999999988 68999999999999998 778888665 8999999
Q ss_pred EEeecCCCccccCCC--CCCCCCCCCccCeeeeccCCc
Q 047598 666 HLDIKGANLLREMPL--GMKELKNLRTLSNFIVGKGEA 701 (1112)
Q Consensus 666 ~L~L~~~~~l~~lp~--~i~~l~~L~~L~~~~~~~~~~ 701 (1112)
+|++++|. +..+|. .++.+++|+.|++.+|.....
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~ 128 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNK 128 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCc
Confidence 99999998 577886 688999999999888765444
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=7.7e-11 Score=139.49 Aligned_cols=105 Identities=24% Similarity=0.242 Sum_probs=73.7
Q ss_pred cccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCC
Q 047598 593 RLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGA 672 (1112)
Q Consensus 593 ~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~ 672 (1112)
.|++|+|++|.++.+|. |+.+++|++|+|++|.+..+|..++.|++|++|+|++| .+..+| .++.+++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 36777777777777765 77777777777777777777777777777777777776 566666 5777777777777777
Q ss_pred CccccC--CCCCCCCCCCCccCeeeeccCCc
Q 047598 673 NLLREM--PLGMKELKNLRTLSNFIVGKGEA 701 (1112)
Q Consensus 673 ~~l~~l--p~~i~~l~~L~~L~~~~~~~~~~ 701 (1112)
. +..+ |..++.+++|+.|++.+|.....
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred C-CCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 6 3444 66677777777777766655443
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.08 E-value=2.1e-11 Score=149.18 Aligned_cols=116 Identities=23% Similarity=0.179 Sum_probs=88.2
Q ss_pred EEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccEEeecCCCccc
Q 047598 597 LSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHHLDIKGANLLR 676 (1112)
Q Consensus 597 L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~ 676 (1112)
++++.|.+...|..+..+.+|++|+|++|.+..+|..+.++++|++|+|++| .+..+|..|++|++|++|+|++|. +.
T Consensus 206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CS
T ss_pred ccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CC
Confidence 3444555555577899999999999999999999999999999999999998 777999999999999999999999 56
Q ss_pred cCCCCCCCCCCCCccCeeeeccCCcccCcccccccccc
Q 047598 677 EMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFL 714 (1112)
Q Consensus 677 ~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L 714 (1112)
.+|..++.|++|++|++.+|.+...|..+..+++|+.|
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCE
T ss_pred ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEE
Confidence 89999999999999999888766665555555555444
No 138
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.08 E-value=2.8e-09 Score=110.80 Aligned_cols=187 Identities=14% Similarity=0.045 Sum_probs=117.9
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
-..++|++..++.+.+++.. . ....+.|+|.+|+|||++|+.+++..... ..-...+.+..+.......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~------~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~ 84 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVER------K--NIPHLLFSGPPGTGKTATAIALARDLFGE---NWRDNFIEMNASDERGIDV 84 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHT------T--CCCCEEEECSTTSSHHHHHHHHHHHHHGG---GGGGGEEEEETTCTTCHHH
T ss_pred HHHHcCcHHHHHHHHHHHhC------C--CCCeEEEECCCCCCHHHHHHHHHHHHhcc---ccccceEEeccccccChHH
Confidence 34689999999999999865 1 22238999999999999999998764211 1111233344444333322
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhhh-h-h
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHVA-S-T 334 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~-~-~ 334 (1112)
+...+ ..+.... ....+++.+||+||++......+..+...+.....+.++|+||+..... . .
T Consensus 85 ~~~~~-~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l 149 (226)
T 2chg_A 85 VRHKI-KEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (226)
T ss_dssp HHHHH-HHHHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHHH-HHHhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHH
Confidence 22211 1111100 0113578999999998766555666666665555678899998765321 1 1
Q ss_pred cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHh
Q 047598 335 MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLG 393 (1112)
Q Consensus 335 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1112)
......+.+.+++.++..+++.+.+......- .++..+.|++.++|.|..+..+.
T Consensus 150 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCceeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 12234789999999999999988764322211 12356778899999998655443
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.06 E-value=2.4e-10 Score=115.23 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=87.1
Q ss_pred cccEEEeccccccccccc--ccCCCcCcEEEccccccccc-cccccCCCCCcEEeecCCCCCcccCc-cccCCccccEEe
Q 047598 593 RLRVLSLQRYYIGELLVS--FEDLKLLRYLNLADTMIRTL-PESTNSLLNLEILILRNCSRLKKLPS-KMRNLINLHHLD 668 (1112)
Q Consensus 593 ~L~~L~L~~~~~~~lp~~--~~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 668 (1112)
.|++|++++|.+..++.. |..+++|++|+|++|.+..+ |..|..+++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 788999999999888753 88899999999999998876 667889999999999998 5555544 588899999999
Q ss_pred ecCCCccccCCCCCCCCCCCCccCeeeeccC
Q 047598 669 IKGANLLREMPLGMKELKNLRTLSNFIVGKG 699 (1112)
Q Consensus 669 L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 699 (1112)
|++|.+....|..+..+++|++|++.+|...
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999865566777888999999888777643
No 140
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.06 E-value=1.4e-10 Score=130.02 Aligned_cols=104 Identities=17% Similarity=0.144 Sum_probs=49.7
Q ss_pred ccEEEeccccccccccc-cc-CCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccCc-cccCCccccEEee
Q 047598 594 LRVLSLQRYYIGELLVS-FE-DLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLPS-KMRNLINLHHLDI 669 (1112)
Q Consensus 594 L~~L~L~~~~~~~lp~~-~~-~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~L 669 (1112)
+++|+|++|.++.++.. +. .+++|++|+|++|.|..+|. .|.++++|++|+|++| .+..+|. .|..+++|++|+|
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEEC
Confidence 45555555555444432 33 45555555555555554442 3455555555555554 3333333 3445555555555
Q ss_pred cCCCccccCCCCCCCCCCCCccCeeeecc
Q 047598 670 KGANLLREMPLGMKELKNLRTLSNFIVGK 698 (1112)
Q Consensus 670 ~~~~~l~~lp~~i~~l~~L~~L~~~~~~~ 698 (1112)
++|.+....|..+..+++|+.|++.+|.+
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcC
Confidence 55553222233455555555555544443
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.05 E-value=4.5e-10 Score=113.08 Aligned_cols=104 Identities=24% Similarity=0.343 Sum_probs=68.6
Q ss_pred CcccEEEecccccccccccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccC-ccccCCccccEEee
Q 047598 592 KRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLP-SKMRNLINLHHLDI 669 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L 669 (1112)
++|++|+|++|.+..+|..|..+++|++|+|++|.|+.++. .|..+++|++|+|++| .+..+| ..|..+++|++|+|
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEEC
Confidence 46677777777777777667777777777777777776653 4667777777777776 444444 35667777777777
Q ss_pred cCCCccccCCCC-CCCCCCCCccCeeeec
Q 047598 670 KGANLLREMPLG-MKELKNLRTLSNFIVG 697 (1112)
Q Consensus 670 ~~~~~l~~lp~~-i~~l~~L~~L~~~~~~ 697 (1112)
++|. +..+|.. +..+++|+.|++.+|.
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 7776 4455543 6666666666665554
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.04 E-value=4.1e-10 Score=113.43 Aligned_cols=116 Identities=22% Similarity=0.244 Sum_probs=72.0
Q ss_pred cEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccC-ccccCCccccEEeecCCC
Q 047598 595 RVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLP-SKMRNLINLHHLDIKGAN 673 (1112)
Q Consensus 595 ~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~~ 673 (1112)
++++++++.+..+|..+. .+|++|+|++|.+..+|..|..+++|++|+|++| .+..++ ..|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 456667776766665543 4677777777777777766777777777777776 444444 346667777777777776
Q ss_pred ccccCC-CCCCCCCCCCccCeeeeccCCccc-Ccccccccccc
Q 047598 674 LLREMP-LGMKELKNLRTLSNFIVGKGEAIS-GLEDLKNLKFL 714 (1112)
Q Consensus 674 ~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~-~l~~l~~L~~L 714 (1112)
+..+| ..+..+++|+.|++.+|.+...+. .+..+++|+.+
T Consensus 90 -l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred -cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEE
Confidence 33443 346677777777776666555433 24445555443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=3.3e-10 Score=111.87 Aligned_cols=103 Identities=21% Similarity=0.344 Sum_probs=76.6
Q ss_pred cEEEecccccccccccccCCCcCcEEEccccccccc-cccccCCCCCcEEeecCCCCCcccCcc-ccCCccccEEeecCC
Q 047598 595 RVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTL-PESTNSLLNLEILILRNCSRLKKLPSK-MRNLINLHHLDIKGA 672 (1112)
Q Consensus 595 ~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~ 672 (1112)
+.+++++|.+..+|..+. .+|++|+|++|.+..+ |..|+++++|++|+|++| .+..+|.. +.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 567888888888877664 6788888888888776 456778888888888887 66667665 467888888888888
Q ss_pred CccccCCCC-CCCCCCCCccCeeeeccCCc
Q 047598 673 NLLREMPLG-MKELKNLRTLSNFIVGKGEA 701 (1112)
Q Consensus 673 ~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~ 701 (1112)
. +..+|.. +..+++|+.|++.+|.....
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred c-cceeCHHHhccccCCCEEEeCCCCcccc
Confidence 7 5566665 77788888888777765443
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.02 E-value=5e-10 Score=112.86 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=87.8
Q ss_pred cEEEecccccccccccccCCCcCcEEEcccccccccccc--ccCCCCCcEEeecCCCCCccc-CccccCCccccEEeecC
Q 047598 595 RVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPES--TNSLLNLEILILRNCSRLKKL-PSKMRNLINLHHLDIKG 671 (1112)
Q Consensus 595 ~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~ 671 (1112)
++++++++.++.+|..+.. +|++|+|++|.+..+|.. ++.+++|++|+|++| .+..+ |..+..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 7899999999999987755 999999999999998864 899999999999999 55555 77899999999999999
Q ss_pred CCccccCCCCCCCCCCCCccCeeeeccCC
Q 047598 672 ANLLREMPLGMKELKNLRTLSNFIVGKGE 700 (1112)
Q Consensus 672 ~~~l~~lp~~i~~l~~L~~L~~~~~~~~~ 700 (1112)
|.+....|..++.+++|++|++.+|....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISC 116 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCe
Confidence 99544444558999999999988776543
No 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.02 E-value=3.9e-10 Score=133.46 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=99.0
Q ss_pred CcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCC
Q 047598 561 NLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNL 640 (1112)
Q Consensus 561 ~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L 640 (1112)
.|+.|.+.++. +. .++ . +..+++|++|+|++|.+..+|..|+.+++|++|+|++|.++.+| .+++|++|
T Consensus 442 ~L~~L~Ls~n~-------l~-~lp-~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKD-------LT-VLC-H-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTSC-------CS-SCC-C-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSC
T ss_pred CceEEEecCCC-------CC-CCc-C-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCC
Confidence 36677776653 22 233 3 78899999999999999999999999999999999999999998 89999999
Q ss_pred cEEeecCCCCCccc--CccccCCccccEEeecCCCccccCCCCCC----CCCCCCccC
Q 047598 641 EILILRNCSRLKKL--PSKMRNLINLHHLDIKGANLLREMPLGMK----ELKNLRTLS 692 (1112)
Q Consensus 641 ~~L~L~~~~~l~~l--p~~i~~L~~L~~L~L~~~~~l~~lp~~i~----~l~~L~~L~ 692 (1112)
++|+|++| .+..+ |..++.+++|++|+|++|. +..+|+.+. .+++|+.|+
T Consensus 511 ~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 511 QELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred cEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 99999998 67776 8999999999999999999 666666543 366676663
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=3.4e-12 Score=129.75 Aligned_cols=108 Identities=20% Similarity=0.240 Sum_probs=88.4
Q ss_pred ccccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccCCccccE
Q 047598 587 LLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRNLINLHH 666 (1112)
Q Consensus 587 ~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 666 (1112)
.+..+++|++|++++|.+..+| .+..+++|++|+|++|.+..+|..+..+++|++|++++| .+..+| .+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 5778888999999999888887 888888999999999988888888888889999999988 677777 5888889999
Q ss_pred EeecCCCccccCCC--CCCCCCCCCccCeeeecc
Q 047598 667 LDIKGANLLREMPL--GMKELKNLRTLSNFIVGK 698 (1112)
Q Consensus 667 L~L~~~~~l~~lp~--~i~~l~~L~~L~~~~~~~ 698 (1112)
|++++|. +..+|. .+..+++|++|++.+|..
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 9998887 455443 577888888888777654
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=3.9e-09 Score=116.73 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=58.1
Q ss_pred CCcccEEEecccccccccccccCCCcCcEEEccccccccccc-cccC--------CCCCcEEeecCCCCCcccCc-cccC
Q 047598 591 FKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPE-STNS--------LLNLEILILRNCSRLKKLPS-KMRN 660 (1112)
Q Consensus 591 ~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~--------L~~L~~L~L~~~~~l~~lp~-~i~~ 660 (1112)
+++|++|||++|.+......-+.++.++++.+..+. +|+ .|.+ +.+|+.|+|.+ .+..++. .|..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence 677888888888876221111223335566666553 333 3556 88888888877 4555654 5778
Q ss_pred CccccEEeecCCCccccCCCC-CCCCCCCCccC
Q 047598 661 LINLHHLDIKGANLLREMPLG-MKELKNLRTLS 692 (1112)
Q Consensus 661 L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~ 692 (1112)
|++|+.|++++|. +..++.. +..+.++..+.
T Consensus 123 ~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 123 CDNLKICQIRKKT-APNLLPEALADSVTAIFIP 154 (329)
T ss_dssp CTTCCEEEBCCSS-CCEECTTSSCTTTCEEEEC
T ss_pred CcccceEEcCCCC-ccccchhhhcCCCceEEec
Confidence 8888888888877 3344433 55555554443
No 148
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.97 E-value=2.2e-09 Score=118.61 Aligned_cols=267 Identities=13% Similarity=0.082 Sum_probs=150.5
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++|++..+..+..++..... .......+.|+|++|+|||++|+.+++... .. .+++..+......++
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~---~~~~~~~vll~G~~GtGKT~la~~i~~~~~-----~~---~~~~~~~~~~~~~~l 80 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA---RKEPLEHLLLFGPPGLGKTTLAHVIAHELG-----VN---LRVTSGPAIEKPGDL 80 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH---HCSCCCCCEEECCTTCCCHHHHHHHHHHHT-----CC---EEEECTTTCCSHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHc---cCCCCCcEEEECCCCCCHHHHHHHHHHHhC-----CC---EEEEeccccCChHHH
Confidence 4699999999998887753100 012235688999999999999999987542 11 234443332222111
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCC------------------CCC
Q 047598 258 SKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAA------------------APN 319 (1112)
Q Consensus 258 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~g 319 (1112)
...+...+ .++.+|+||++..........+...+... .++
T Consensus 81 ---------------------~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 81 ---------------------AAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ---------------------HHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ---------------------HHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 11111111 35678999999776544444444333211 023
Q ss_pred cEEEEEcCChhhh-hhc-C-CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhhh
Q 047598 320 SKMIITTRHSHVA-STM-G-PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGLL 396 (1112)
Q Consensus 320 s~iivTTR~~~v~-~~~-~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 396 (1112)
.++|.||...... ..+ . ....+.+.+++.++..+++...+...... ...+....+++.++|.|-.+..+...+
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR----ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC----CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5677776644321 111 1 12578999999999999998877543221 123456788999999998776655433
Q ss_pred cC------C---CHHHHHHHHhccccCCCCCCCchHHHHHHhcCCchHHHHHHhHhh-cCCCC----------ceechHH
Q 047598 397 RT------T---RCDLWEDILDSKIWDLPQQSGILPVLRLSYHHLPSYLKRCFAYCA-IFPKD----------YEFYEKE 456 (1112)
Q Consensus 397 ~~------~---~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a-~fp~~----------~~i~~~~ 456 (1112)
.. . +.+....++.... ..+..++...+..+..+. .|..+ ..+++..
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~~~~--------------~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~t 280 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALAALG--------------LDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGT 280 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHHHHT--------------CCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc--------------ccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHH
Confidence 21 1 3444444443211 112344444444444333 22111 1133333
Q ss_pred HHH----HHHhCCcccccCCCchHHHHHHHHHH-HHhhCCcccc
Q 047598 457 LVF----LWIGGGIIRQSKNNEQLEDLGSQCFH-DLVSRSIFQP 495 (1112)
Q Consensus 457 li~----~Wia~g~i~~~~~~~~~~~~~~~~~~-~L~~~~l~~~ 495 (1112)
+.+ +-+..|+|.....+....+.|..|+. ++++|+|||+
T Consensus 281 l~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 281 LEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 332 45678999877777888899999998 9999999985
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=9.8e-10 Score=108.08 Aligned_cols=103 Identities=22% Similarity=0.270 Sum_probs=83.2
Q ss_pred ccEEEecccccccccccccCCCcCcEEEccccccccc-cccccCCCCCcEEeecCCCCCcccCcc-ccCCccccEEeecC
Q 047598 594 LRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTL-PESTNSLLNLEILILRNCSRLKKLPSK-MRNLINLHHLDIKG 671 (1112)
Q Consensus 594 L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~ 671 (1112)
.+++++++|.+..+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|.. +..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 5688899998888887764 7889999999998877 556888999999999998 67677664 57899999999999
Q ss_pred CCccccCCCC-CCCCCCCCccCeeeeccCC
Q 047598 672 ANLLREMPLG-MKELKNLRTLSNFIVGKGE 700 (1112)
Q Consensus 672 ~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~ 700 (1112)
|. +..+|.. +..+++|+.|++.+|....
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 88 5666664 8888999999888876543
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=1.8e-09 Score=119.42 Aligned_cols=285 Identities=14% Similarity=0.100 Sum_probs=150.0
Q ss_pred CCcccEEEecccccccccccccC-CCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCc-cccC--------
Q 047598 591 FKRLRVLSLQRYYIGELLVSFED-LKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPS-KMRN-------- 660 (1112)
Q Consensus 591 ~~~L~~L~L~~~~~~~lp~~~~~-l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~-------- 660 (1112)
+..++.|.++++--..-...+.. +++|++|||++|.|......-+.++.+..+.+..+ .+|. .|..
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKG 99 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccc
Confidence 46788888887521111122333 78999999999999832222233444566666665 3443 4667
Q ss_pred CccccEEeecCCCccccCCCC-CCCCCCCCccCeeeeccCCcc-cCccccccccccCCeeEEecccCCCChhhhhhcccc
Q 047598 661 LINLHHLDIKGANLLREMPLG-MKELKNLRTLSNFIVGKGEAI-SGLEDLKNLKFLGGELCISGLENVNDSQKVREATLC 738 (1112)
Q Consensus 661 L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~-~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~ 738 (1112)
+++|+.|+|.+ . ++.++.. +..+++|+.+.+..+.....+ ..+..+.++..+..... .............+.
T Consensus 100 ~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~----~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 100 KQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSS----DAYRFKNRWEHFAFI 173 (329)
T ss_dssp CTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCT----HHHHTSTTTTTSCEE
T ss_pred cCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcch----hhhhccccccccccc
Confidence 99999999998 4 6777765 899999999998877643321 23444444433320000 000000111122234
Q ss_pred CccccC-ceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCCCC
Q 047598 739 EKENLK-TLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNCTS 817 (1112)
Q Consensus 739 ~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~ 817 (1112)
++..|+ .+.+..... . .......-..+.++..+.+.+.-.......+. ..+++|+.|+|++|.+...
T Consensus 174 ~~~~L~~~i~~~~~~~---l--------~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~-~~~~~L~~l~L~~n~i~~I 241 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGK---L--------EDEIMKAGLQPRDINFLTIEGKLDNADFKLIR-DYMPNLVSLDISKTNATTI 241 (329)
T ss_dssp ESCCCEEEEEECTTCC---H--------HHHHHHTTCCGGGCSEEEEEECCCHHHHHHHH-HHCTTCCEEECTTBCCCEE
T ss_pred cccccceeEEecCCCc---H--------HHHHhhcccCccccceEEEeeeecHHHHHHHH-HhcCCCeEEECCCCCccee
Confidence 444444 233321111 0 11111111223445555555432110000000 0156788888887765433
Q ss_pred CC-CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccc-eeecCCCCcccccccccCCCCcCCcccCCCccceEeE
Q 047598 818 LP-SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLE-ILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSI 895 (1112)
Q Consensus 818 l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l 895 (1112)
.+ .+..+++|+.|++.++ ++.++...+.. +++|+ .+.+.+ .+..+ ....+..+++|+.|++
T Consensus 242 ~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~-----~~~L~~~l~l~~--~l~~I--------~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 242 PDFTFAQKKYLLKIKLPHN--LKTIGQRVFSN-----CGRLAGTLELPA--SVTAI--------EFGAFMGCDNLRYVLA 304 (329)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTT-----CTTCCEEEEECT--TCCEE--------CTTTTTTCTTEEEEEE
T ss_pred cHhhhhCCCCCCEEECCcc--cceehHHHhhC-----ChhccEEEEEcc--cceEE--------chhhhhCCccCCEEEe
Confidence 22 6778888888888775 66676655443 67777 777765 22222 2234566777777777
Q ss_pred ecCCCCCCCCCCCCCCccee
Q 047598 896 MECPKLSGKLPELLPSLETL 915 (1112)
Q Consensus 896 ~~c~~L~~~~p~~~~~L~~L 915 (1112)
.+ ++++..-+..|.++.+|
T Consensus 305 ~~-n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 305 TG-DKITTLGDELFGNGVPS 323 (329)
T ss_dssp CS-SCCCEECTTTTCTTCCC
T ss_pred CC-CccCccchhhhcCCcch
Confidence 66 56663323344443333
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=1.8e-08 Score=111.23 Aligned_cols=188 Identities=15% Similarity=0.122 Sum_probs=116.5
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
-..++|++..++.+.+++.. + ....+.|+|++|+||||+|+.+++..... ......+++..+......
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~---~~~~~~~~~~~~~~~~~~- 87 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKD------G--NMPHMIISGMPGIGKTTSVHCLAHELLGR---SYADGVLELNASDDRGID- 87 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHS------C--CCCCEEEECSTTSSHHHHHHHHHHHHHGG---GHHHHEEEECTTSCCSHH-
T ss_pred HHHHHCCHHHHHHHHHHHHc------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCC---cccCCEEEecCccccChH-
Confidence 35689999999999999865 2 22238899999999999999998864211 111123334333322222
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhh-hhh
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAV-DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHV-AST 334 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~~ 334 (1112)
..+.+++.+.... ..+ .+++.+||+||++......+..+...+.....++++|+||+...- ...
T Consensus 88 ~i~~~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~ 153 (323)
T 1sxj_B 88 VVRNQIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEP 153 (323)
T ss_dssp HHHTHHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhH
Confidence 2222222221000 011 456899999999876555555565555555567788888876432 111
Q ss_pred -cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH-HHHHHhh
Q 047598 335 -MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL-AAKSLGG 394 (1112)
Q Consensus 335 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~ 394 (1112)
......+.+.+++.++..+++...+...+..- ..+....|++.|+|.|. |+..+..
T Consensus 154 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 154 LQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKY----TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhceEEeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12335899999999999999988764322111 12356789999999995 4554443
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.87 E-value=4.8e-09 Score=104.22 Aligned_cols=106 Identities=25% Similarity=0.397 Sum_probs=87.1
Q ss_pred CcccEEEecccccccccc-cccCCCcCcEEEcccccccccccc-ccCCCCCcEEeecCCCCCcccCcc-ccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGELLV-SFEDLKLLRYLNLADTMIRTLPES-TNSLLNLEILILRNCSRLKKLPSK-MRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp~-~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 668 (1112)
++|+.|++++|.+..+|. .|..+++|++|+|++|.+..+|.. +..+++|++|++++| .+..+|.. +..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEE
Confidence 678999999999888775 468899999999999999988765 688999999999998 66666654 68899999999
Q ss_pred ecCCCccccCCCC-CCCCCCCCccCeeeeccC
Q 047598 669 IKGANLLREMPLG-MKELKNLRTLSNFIVGKG 699 (1112)
Q Consensus 669 L~~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~ 699 (1112)
+++|. +..+|.. +..+++|++|++.+|...
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 99998 5667766 578899999988877644
No 153
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.86 E-value=9.1e-11 Score=119.17 Aligned_cols=126 Identities=23% Similarity=0.281 Sum_probs=105.1
Q ss_pred hhccCCCcceeccccccCCcccccccccccccccccCCcccEEEecccccccccccccCCCcCcEEEccccccccccccc
Q 047598 555 VFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPEST 634 (1112)
Q Consensus 555 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i 634 (1112)
.+..+++|+.|.+.++. +.. ++ .+..+++|++|++++|.+..+|..+..+++|++|+|++|.+..+| .+
T Consensus 43 ~~~~l~~L~~L~ls~n~-------l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-------IEK-IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEE-------ESC-CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred HHhcCCCCCEEECCCCC-------Ccc-cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 67789999999987764 222 32 578899999999999999999988888899999999999999987 68
Q ss_pred cCCCCCcEEeecCCCCCcccCc--cccCCccccEEeecCCCccccCCCC----------CCCCCCCCccC
Q 047598 635 NSLLNLEILILRNCSRLKKLPS--KMRNLINLHHLDIKGANLLREMPLG----------MKELKNLRTLS 692 (1112)
Q Consensus 635 ~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~----------i~~l~~L~~L~ 692 (1112)
+.+++|++|++++| .+..+|. .+..+++|++|++++|.+....|.. +..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999999999998 6777664 6899999999999999854444432 66777888776
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.85 E-value=3.3e-09 Score=104.67 Aligned_cols=89 Identities=22% Similarity=0.258 Sum_probs=78.4
Q ss_pred CcccEEEecccccccc-cccccCCCcCcEEEcccccccccccc-ccCCCCCcEEeecCCCCCcccCcc-ccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGEL-LVSFEDLKLLRYLNLADTMIRTLPES-TNSLLNLEILILRNCSRLKKLPSK-MRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 668 (1112)
+.|++|+|++|.+..+ |..|.++++|++|+|++|.++.+|.. |.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 7899999999999888 56799999999999999999999886 589999999999998 77888875 88999999999
Q ss_pred ecCCCccccCCCCC
Q 047598 669 IKGANLLREMPLGM 682 (1112)
Q Consensus 669 L~~~~~l~~lp~~i 682 (1112)
|++|. +...|..+
T Consensus 112 L~~N~-~~c~~~~~ 124 (174)
T 2r9u_A 112 LYNNP-WDCECRDI 124 (174)
T ss_dssp CCSSC-BCTTBGGG
T ss_pred eCCCC-cccccccH
Confidence 99998 55555443
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.76 E-value=2e-08 Score=99.61 Aligned_cols=104 Identities=18% Similarity=0.249 Sum_probs=87.0
Q ss_pred ccEEEecccccccccccccCCCcCcEEEcccccccccccc-ccCCCCCcEEeecCCCCCcccCcc-ccCCccccEEeecC
Q 047598 594 LRVLSLQRYYIGELLVSFEDLKLLRYLNLADTMIRTLPES-TNSLLNLEILILRNCSRLKKLPSK-MRNLINLHHLDIKG 671 (1112)
Q Consensus 594 L~~L~L~~~~~~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~ 671 (1112)
.+.++++++.+..+|..+. ++|++|++++|.+..+|.. ++.+++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 4688999999999987654 6999999999999988765 689999999999998 67777654 68999999999999
Q ss_pred CCccccCCCC-CCCCCCCCccCeeeeccCCc
Q 047598 672 ANLLREMPLG-MKELKNLRTLSNFIVGKGEA 701 (1112)
Q Consensus 672 ~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~ 701 (1112)
|. +..+|.. ++.+++|++|++.++.....
T Consensus 86 N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 115 (177)
T 2o6r_A 86 NK-LQSLPNGVFDKLTQLKELALDTNQLKSV 115 (177)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CC-ccccCHHHhhCCcccCEEECcCCcceEe
Confidence 98 5566654 78999999999887765433
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.72 E-value=2e-08 Score=98.67 Aligned_cols=81 Identities=28% Similarity=0.381 Sum_probs=73.7
Q ss_pred CcccEEEecccccccc-cccccCCCcCcEEEcccccccccccc-ccCCCCCcEEeecCCCCCcccCc-cccCCccccEEe
Q 047598 592 KRLRVLSLQRYYIGEL-LVSFEDLKLLRYLNLADTMIRTLPES-TNSLLNLEILILRNCSRLKKLPS-KMRNLINLHHLD 668 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~l-p~~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 668 (1112)
+.|++|+|++|.+..+ |..|.++++|++|+|++|.+..+|.. |..+++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 7899999999999888 56799999999999999999999876 589999999999998 6777776 488999999999
Q ss_pred ecCCC
Q 047598 669 IKGAN 673 (1112)
Q Consensus 669 L~~~~ 673 (1112)
|++|.
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 99998
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=1.4e-07 Score=104.22 Aligned_cols=184 Identities=15% Similarity=0.078 Sum_probs=114.6
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++|++..++.+..++.. + ....+.|+|++|+||||+|+.+++..... ..-...+.+..+...... .
T Consensus 25 ~~~~g~~~~~~~l~~~l~~------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~---~~~~~~~~~~~~~~~~~~-~ 92 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT------G--SMPHLLFAGPPGVGKTTAALALARELFGE---NWRHNFLELNASDERGIN-V 92 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHH------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGG---GHHHHEEEEETTCHHHHH-T
T ss_pred HHhhCCHHHHHHHHHHHHc------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCC---cccCceEEeeccccCchH-H
Confidence 4589999999999998865 1 22348999999999999999998864211 000112333332211110 0
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHH--h-CCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhh-hh
Q 047598 258 SKALLESITRKPCHLNTLNEVQVDLKTA--V-DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHV-AS 333 (1112)
Q Consensus 258 ~~~il~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~ 333 (1112)
.+..+ ...... + .+++.++|+||++......+..+...+.....++++|+||....- ..
T Consensus 93 ~~~~~-----------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~ 155 (327)
T 1iqp_A 93 IREKV-----------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 155 (327)
T ss_dssp THHHH-----------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred HHHHH-----------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCH
Confidence 11111 111110 1 256889999999876656666676666555567888888876532 11
Q ss_pred hc-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhh
Q 047598 334 TM-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGG 394 (1112)
Q Consensus 334 ~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 394 (1112)
.. .....+.+.+++.++..+++...+...+.. ...+....|++.++|.|-.+..+..
T Consensus 156 ~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 156 PIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE----LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE----ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11 122478999999999999998876543221 1234567888999999986554443
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.62 E-value=6.8e-07 Score=95.54 Aligned_cols=175 Identities=11% Similarity=0.081 Sum_probs=106.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCC---CCceeEEEEeCCCCCHH
Q 047598 179 AVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDF---KFDIKAWVCISDVFDVL 255 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~---~F~~~~wv~~~~~~~~~ 255 (1112)
.+.||+++.++|...|...- ..+....+.|+|++|+|||++|+.|+++........ .| ..+.+.+....+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i----~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL----MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--H
T ss_pred ccCCHHHHHHHHHHHHHHHh----cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHH
Confidence 47899999999998876411 123456789999999999999999998764321111 12 45677777777888
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHh---CCCcEEEEEeCCCCCC-hhhHHHHHhcccCCCCCc--EEEEEcCCh
Q 047598 256 SISKALLESITRKPCHLNTLNEVQVDLKTAV---DGKRFLLVLDDVWNED-YSLWVDLKAPLLAAAPNS--KMIITTRHS 329 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs--~iivTTR~~ 329 (1112)
.++..|++++.+.........+....+...+ .+++++++||+++.-. ++....+.. ++.. .++ .||.++...
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~-~~~~-~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEK-WISS-KNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHH-HHHC-SSCCEEEEEECCSS
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHh-cccc-cCCcEEEEEEecCc
Confidence 9999999999654322222222233333332 4678999999997643 111111211 1111 223 344445443
Q ss_pred hhh---------hhcCCCceeeCCCCChHhHHHHHHHhHhC
Q 047598 330 HVA---------STMGPIKHYNLKRLLDEDCWSIFIKHAYE 361 (1112)
Q Consensus 330 ~v~---------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 361 (1112)
+.. +.++ ...+.+.+++.++-.+++.+++-.
T Consensus 174 d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 174 VTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 221 1221 246899999999999999887643
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=6.1e-08 Score=108.13 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=60.3
Q ss_pred EEeccc-ccccccccccCCCcCcEEEccc-ccccccc-ccccCCCCCcEEeecCCCCCcccC-ccccCCccccEEeecCC
Q 047598 597 LSLQRY-YIGELLVSFEDLKLLRYLNLAD-TMIRTLP-ESTNSLLNLEILILRNCSRLKKLP-SKMRNLINLHHLDIKGA 672 (1112)
Q Consensus 597 L~L~~~-~~~~lp~~~~~l~~Lr~L~Ls~-n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~L~~~ 672 (1112)
++++++ .+..+|. |..+.+|++|+|++ |.+..+| ..|++|.+|++|+|++| .+..+| ..|.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 456665 5666666 66666777777764 6666665 34666777777777776 444443 34566777777777776
Q ss_pred CccccCCCCCCCCCCCCccCeeeecc
Q 047598 673 NLLREMPLGMKELKNLRTLSNFIVGK 698 (1112)
Q Consensus 673 ~~l~~lp~~i~~l~~L~~L~~~~~~~ 698 (1112)
. +..+|..+.....|+.|++.+|..
T Consensus 91 ~-l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred c-cceeCHHHcccCCceEEEeeCCCc
Confidence 6 455555433322366666655543
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.55 E-value=2.1e-06 Score=97.32 Aligned_cols=59 Identities=14% Similarity=0.334 Sum_probs=26.0
Q ss_pred cccccCCcccEEEeccccccccc-ccccCCCcCcEEEccccccccccc-cccCCCCCcEEeec
Q 047598 586 DLLPKFKRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILR 646 (1112)
Q Consensus 586 ~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~ 646 (1112)
.+|.++.+|+.+.+.. .+..+. .+|.+|.+|+.++|..+ ++.++. .|..+.+|+.+.+.
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 3445555555555542 233443 23455555555555433 333332 23444444444443
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.53 E-value=1.2e-06 Score=98.83 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=65.7
Q ss_pred ccccccccCCcccEEEeccccccccc-ccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccCccccC
Q 047598 583 VLSDLLPKFKRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLPSKMRN 660 (1112)
Q Consensus 583 ~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 660 (1112)
+....|.++ +|+.+.+..+ +..++ .+|.++ +|+.+.+.. .+..++. .|.++.+|+.+++.+| .+..+|.....
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~ 201 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFV 201 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTT
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEe
Confidence 344556664 5777777654 55555 345553 577777775 4555543 4677777888888775 66777665545
Q ss_pred CccccEEeecCCCccccCCCC-CCCCCCCCccCe
Q 047598 661 LINLHHLDIKGANLLREMPLG-MKELKNLRTLSN 693 (1112)
Q Consensus 661 L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~ 693 (1112)
..+|+.+.+..+ +..++.. +..+++|+.+.+
T Consensus 202 ~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 202 YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred ecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 677777777644 3445443 666677766654
No 162
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.49 E-value=1.8e-06 Score=97.20 Aligned_cols=195 Identities=15% Similarity=0.132 Sum_probs=114.0
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++|++..++.+..++.. + .....+.|+|.+|+||||+|+.+.+..... ..+. ...+..-..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~---~~~~-------~~~~~~~~~ 78 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSL------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCE---TGIT-------ATPCGVCDN 78 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHH------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCT---TCSC-------SSCCSSSHH
T ss_pred hhccCcHHHHHHHHHHHHh------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCC---CCCC-------CCCCcccHH
Confidence 3589999999999999865 1 123478899999999999999998765321 1000 000000000
Q ss_pred HHHHHHHh-------cCC-CCCCCChHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC
Q 047598 258 SKALLESI-------TRK-PCHLNTLNEVQVDLKTA-VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH 328 (1112)
Q Consensus 258 ~~~il~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 328 (1112)
...+.... ... ........++...+... ..+++.+||+||++......+..+...+.....+..+|++|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred HHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 01111000 000 01112222222222111 2356789999999876656666666666554556777777764
Q ss_pred hh-hhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHh
Q 047598 329 SH-VAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLG 393 (1112)
Q Consensus 329 ~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1112)
.. +... ......+.+.+++.++..+++...+...+... ..+....|++.++|.|..+..+.
T Consensus 159 ~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~----~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 159 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHCCCCHHHHHHHH
Confidence 43 2111 12336789999999999999987653322111 12346789999999998776554
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.46 E-value=6.3e-06 Score=93.35 Aligned_cols=124 Identities=10% Similarity=0.106 Sum_probs=79.1
Q ss_pred hhhccCCCcceeccccccCCcccccccccccccccccCCcccEEEeccccccccc-ccccCCCcCcEEEcccccccccc-
Q 047598 554 EVFYQTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLP- 631 (1112)
Q Consensus 554 ~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp- 631 (1112)
.+|..+.+|+++.+... -..+...+|.++.+|+.+++..+ +..++ ..|.++.+|+.+.+..+ +..++
T Consensus 65 ~AF~~c~~L~~i~lp~~---------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST---------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp TTTTTCTTEEEEECCTT---------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred HHhhCCCCceEEEeCCC---------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 56888899998877432 13455677999999999999754 66665 46888999988877654 33333
Q ss_pred ccccCCCCCcEEeecCCCCCccc-CccccCCccccEEeecCCCccccCCCC-CCCCCCCCccCe
Q 047598 632 ESTNSLLNLEILILRNCSRLKKL-PSKMRNLINLHHLDIKGANLLREMPLG-MKELKNLRTLSN 693 (1112)
Q Consensus 632 ~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~~ 693 (1112)
..|.....+........ ..+ ...|..+++|+.+.+.++. ..++.. +..+.+|+.+.+
T Consensus 134 ~aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp TTTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCC
T ss_pred eeeecccccccccCccc---cccchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEc
Confidence 23455544443333322 222 2357778888888876553 344443 666777777664
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.45 E-value=4.7e-06 Score=93.86 Aligned_cols=250 Identities=9% Similarity=0.113 Sum_probs=150.0
Q ss_pred ccCCcccEEEeccccccccc-ccccCCCcCcEEEcccccccccccc-ccCCCCCcEEeecCCCCCcccC-ccccCCcccc
Q 047598 589 PKFKRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPES-TNSLLNLEILILRNCSRLKKLP-SKMRNLINLH 665 (1112)
Q Consensus 589 ~~~~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~ 665 (1112)
..+..++.+.+.+ .+..++ .+|.++ +|+.+.|..+ ++.++.. |.+ .+|+.+.+.. .+..++ ..|..+++|+
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCC
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCC
Confidence 3446677776654 455665 457765 7999999876 7777654 555 5799999986 466665 4688899999
Q ss_pred EEeecCCCccccCCCCCCCCCCCCccCeeeeccCCcccCccccccccccCCeeEEecccCCCChhhhhhccccCccccCc
Q 047598 666 HLDIKGANLLREMPLGMKELKNLRTLSNFIVGKGEAISGLEDLKNLKFLGGELCISGLENVNDSQKVREATLCEKENLKT 745 (1112)
Q Consensus 666 ~L~L~~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 745 (1112)
.+++.+|. +..+|...-...+|+.+.+..+ . + ......|.++.+|+.
T Consensus 184 ~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l-------------~------------------~I~~~aF~~~~~L~~ 230 (401)
T 4fdw_A 184 KADLSKTK-ITKLPASTFVYAGIEEVLLPVT-L-------------K------------------EIGSQAFLKTSQLKT 230 (401)
T ss_dssp EEECTTSC-CSEECTTTTTTCCCSEEECCTT-C-------------C------------------EECTTTTTTCTTCCC
T ss_pred eeecCCCc-ceEechhhEeecccCEEEeCCc-h-------------h------------------eehhhHhhCCCCCCE
Confidence 99999887 6777766434566666654211 1 1 011123444555555
Q ss_pred eEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeEEEEcCcCCC----CCCC--
Q 047598 746 LSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEVLKLENCWNC----TSLP-- 819 (1112)
Q Consensus 746 L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~----~~l~-- 819 (1112)
+.+..+-. ...-..+.. .+|+.+.+.+ ....++...+. .+++|+.+.+.++... ..++
T Consensus 231 l~l~~~l~-------------~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~-~c~~L~~l~l~~~~~~~~~~~~I~~~ 294 (401)
T 4fdw_A 231 IEIPENVS-------------TIGQEAFRE-SGITTVKLPN-GVTNIASRAFY-YCPELAEVTTYGSTFNDDPEAMIHPY 294 (401)
T ss_dssp EECCTTCC-------------EECTTTTTT-CCCSEEEEET-TCCEECTTTTT-TCTTCCEEEEESSCCCCCTTCEECTT
T ss_pred EecCCCcc-------------Ccccccccc-CCccEEEeCC-CccEEChhHhh-CCCCCCEEEeCCccccCCcccEECHH
Confidence 55532210 000111222 4566666633 23344433322 2788899988876543 1233
Q ss_pred CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcccCCCccceEeEecCC
Q 047598 820 SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRVEIFPRLHKLSIMECP 899 (1112)
Q Consensus 820 ~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 899 (1112)
.+..|++|+.+.|.+ .++.++...+.. +++|+.+.+.. ++..+ ....+..+ +|+.+.+.+ +
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~~~aF~~-----c~~L~~l~lp~--~l~~I--------~~~aF~~~-~L~~l~l~~-n 355 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILGQGLLGG-----NRKVTQLTIPA--NVTQI--------NFSAFNNT-GIKEVKVEG-T 355 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTT-----CCSCCEEEECT--TCCEE--------CTTSSSSS-CCCEEEECC-S
T ss_pred HhhCCccCCeEEeCC--ceEEEhhhhhcC-----CCCccEEEECc--cccEE--------cHHhCCCC-CCCEEEEcC-C
Confidence 688889999999984 477777655543 78888888854 12222 22345667 899999988 5
Q ss_pred CCCCCCCCCCCCc
Q 047598 900 KLSGKLPELLPSL 912 (1112)
Q Consensus 900 ~L~~~~p~~~~~L 912 (1112)
.+....+..|..+
T Consensus 356 ~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 356 TPPQVFEKVWYGF 368 (401)
T ss_dssp SCCBCCCSSCCCS
T ss_pred CCcccccccccCC
Confidence 5553333444443
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=3e-07 Score=102.54 Aligned_cols=85 Identities=22% Similarity=0.223 Sum_probs=75.0
Q ss_pred cccCCcccEEEecc-ccccccc-ccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccCccccCCccc
Q 047598 588 LPKFKRLRVLSLQR-YYIGELL-VSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLPSKMRNLINL 664 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~-~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 664 (1112)
+..+.+|+.|+|++ |.+..+| ..|.+|++|++|+|++|.|..+|+ .|.+|++|++|+|++| .+..+|..+....+|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCc
Confidence 78889999999996 9999887 579999999999999999998765 6799999999999998 788888765554459
Q ss_pred cEEeecCCC
Q 047598 665 HHLDIKGAN 673 (1112)
Q Consensus 665 ~~L~L~~~~ 673 (1112)
++|+|.+|.
T Consensus 106 ~~l~l~~N~ 114 (347)
T 2ifg_A 106 QELVLSGNP 114 (347)
T ss_dssp CEEECCSSC
T ss_pred eEEEeeCCC
Confidence 999999998
No 166
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.42 E-value=2.2e-06 Score=94.16 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=111.5
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCc-eeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFD-IKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~ 256 (1112)
..++|++..++.+.+++.. +....+.|+|++|+|||++|+.+++.... ..+. ..+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKt~la~~l~~~l~~----~~~~~~~~~~~~~~~~~~-- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER--------KNIPHLLFSGPPGTGKTATAIALARDLFG----ENWRDNFIEMNASDERGI-- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT--------TCCCCEEEESSSSSSHHHHHHHHHHHHHT----TCHHHHCEEEETTSTTCT--
T ss_pred HHHhCCHHHHHHHHHHHhC--------CCCCeEEEECcCCcCHHHHHHHHHHHhcC----CcccCCeEEEeCccccCh--
Confidence 4689999999998888754 12223889999999999999999876421 1111 1233333322111
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHH--h-CCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChh-hh
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTA--V-DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSH-VA 332 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~ 332 (1112)
.........+... + .+++.++|+|+++.........+...+.....+.++|+||.... +.
T Consensus 83 ----------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~ 146 (319)
T 2chq_A 83 ----------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII 146 (319)
T ss_dssp ----------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC
T ss_pred ----------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcc
Confidence 1111111111111 1 25688999999977655555556665555456778888876543 21
Q ss_pred hh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 333 ST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
.. ......+.+.+++.++..+++...+...+..- ..+....+++.++|.+-.+...
T Consensus 147 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 147 EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCB----CHHHHHHHHHTTTTCHHHHHHH
T ss_pred hHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 11 12235789999999999999987765432211 1335677889999998765443
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.29 E-value=2.1e-05 Score=86.98 Aligned_cols=178 Identities=16% Similarity=0.135 Sum_probs=106.1
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
-..++|++..++.+..++..... .......|.|+|++|+|||++|+.+++... ..| +.+..+.....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~---~~~~~~~vll~G~~GtGKT~la~~ia~~~~-----~~~---~~~~~~~~~~~-- 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK---RNECLDHILFSGPAGLGKTTLANIISYEMS-----ANI---KTTAAPMIEKS-- 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH---TTSCCCCEEEECSTTSSHHHHHHHHHHHTT-----CCE---EEEEGGGCCSH--
T ss_pred HHHhCChHHHHHHHHHHHHHHHh---cCCCCCeEEEECcCCCCHHHHHHHHHHHhC-----CCe---EEecchhccch--
Confidence 45799999999999888864110 122344688999999999999999987643 222 22332221111
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCC------------------C
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAA------------------P 318 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~ 318 (1112)
......+.. ..+..+|+||++..........+...+.... +
T Consensus 95 -------------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 95 -------------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp -------------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred -------------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 111111111 2456789999998765444444444333211 1
Q ss_pred CcEEEEEcCChhhh-hh-cC-CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 319 NSKMIITTRHSHVA-ST-MG-PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 319 gs~iivTTR~~~v~-~~-~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
+..+|.+|...... .. .. ....+.+.+++.++..+++...+..... ....+....|++.+.|.|-.+..+
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 24566666543221 11 11 2357899999999999999887643322 122345677888999998544433
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.22 E-value=1.8e-06 Score=90.45 Aligned_cols=173 Identities=12% Similarity=0.052 Sum_probs=98.2
Q ss_pred cceecc---hhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCH
Q 047598 178 RAVYGR---DKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDV 254 (1112)
Q Consensus 178 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~ 254 (1112)
..|+|+ +...+.+..+... ...+.+.|+|++|+||||+|+.+++..... ...+.|+.++...+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-----~~~~~~~~~~~~~~~ 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG--------DGVQAIYLWGPVKSGRTHLIHAACARANEL-----ERRSFYIPLGIHASI 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT--------CSCSEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEGGGGGGS
T ss_pred hhccCCCCCHHHHHHHHHHHhC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEEHHHHHHH
Confidence 346653 2445555555543 134578899999999999999998865422 234566665432110
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhh--HHHHHhcccCC-CCC-cEEEEEcCChh
Q 047598 255 LSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSL--WVDLKAPLLAA-APN-SKMIITTRHSH 330 (1112)
Q Consensus 255 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTTR~~~ 330 (1112)
+.+ .+ +.+ .++.+||+||++...... ...+...+... ..+ .++|+||+...
T Consensus 95 ------~~~-----------------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 95 ------STA-----------------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp ------CGG-----------------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred ------HHH-----------------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 000 00 011 345689999997643222 22233222111 112 24777776432
Q ss_pred ---------hhhhcCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 331 ---------VASTMGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 331 ---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
+...+.....+.+.+++.++..+++...+...... ..++....|++.++|.+-.+..+
T Consensus 150 ~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 150 MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ----LPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC----CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHccCCHHHHHHH
Confidence 11222223678999999999999998876432221 12345678888999988665543
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=9.9e-06 Score=94.66 Aligned_cols=202 Identities=14% Similarity=0.135 Sum_probs=111.1
Q ss_pred CcceecchhhHHHHHHHHhcCC---------CCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEE
Q 047598 177 ERAVYGRDKDKARILKMVLSTD---------EKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVC 247 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~ 247 (1112)
-..++|++..++++.+++.... ....+.+..+.+.|+|++|+||||+|+.+++... + .++.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-------~-~~i~in 109 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-------Y-DILEQN 109 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-------C-EEEEEC
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-------C-CEEEEe
Confidence 3569999999999999986410 0000112346899999999999999999998652 2 233445
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh---hhHHHHHhcccCCCCCcEEEE
Q 047598 248 ISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDY---SLWVDLKAPLLAAAPNSKMII 324 (1112)
Q Consensus 248 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~iiv 324 (1112)
.+...... +....+........-..-...... .....+++.+||+|+++.... ..+..+...+.. .+..||+
T Consensus 110 ~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIl 184 (516)
T 1sxj_A 110 ASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLIL 184 (516)
T ss_dssp TTSCCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEE
T ss_pred CCCcchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEE
Confidence 55444432 222222222111000000000000 001236789999999975322 223344333332 2334555
Q ss_pred EcCChh---hhhhcCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCC-chHHHHHHhhh
Q 047598 325 TTRHSH---VASTMGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGG-LPLAAKSLGGL 395 (1112)
Q Consensus 325 TTR~~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~~ 395 (1112)
++.... +.........+.+.+++.++..+++...+......-++. ....|++.++| ++-|+..+..+
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~----~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN----VIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT----HHHHHHHHTTTCHHHHHHHHTHH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHcCCcHHHHHHHHHHH
Confidence 554432 222222345789999999999998887664432222222 35678888988 55566665433
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.18 E-value=1.5e-05 Score=90.87 Aligned_cols=182 Identities=14% Similarity=0.028 Sum_probs=104.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
...+.|+|.+|+||||||+.+++....... . ..+++++.. .+...+...+... . ...+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~--~-~~v~~v~~~------~~~~~~~~~~~~~-----~----~~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEP--D-LRVMYITSE------KFLNDLVDSMKEG-----K----LNEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCC--S-SCEEEEEHH------HHHHHHHHHHHTT-----C----HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCC--C-CeEEEeeHH------HHHHHHHHHHHcc-----c----HHHHHHHh
Confidence 567899999999999999999986532100 1 123444432 3344455444322 1 12233444
Q ss_pred CCCcEEEEEeCCCCCCh--hhHHHHHhcccC-CCCCcEEEEEcCCh---------hhhhhcCCCceeeCCCCChHhHHHH
Q 047598 287 DGKRFLLVLDDVWNEDY--SLWVDLKAPLLA-AAPNSKMIITTRHS---------HVASTMGPIKHYNLKRLLDEDCWSI 354 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~L 354 (1112)
..+.-+|++||++.... ..-+.+...+.. ...|..||+||... .+...+.....+.+.+++.++-.++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 44677999999965432 122233333221 13467888888763 2223333446789999999999999
Q ss_pred HHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHhhh------hcCC--CHHHHHHHHhc
Q 047598 355 FIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLGGL------LRTT--RCDLWEDILDS 410 (1112)
Q Consensus 355 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~------l~~~--~~~~w~~~l~~ 410 (1112)
+.+.+......-++ ++...|++.++|.+-.+.-+... ..++ +.+.++.++..
T Consensus 272 L~~~~~~~~~~i~~----e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 272 ARKMLEIEHGELPE----EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHHTCCCCT----THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHHcCCCCCH----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 98876432211112 24567888889887544322211 1222 56666666654
No 171
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.17 E-value=3.2e-06 Score=85.00 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=38.4
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..++||+++++++.+++.. ...+.+.|+|.+|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999864 223467899999999999999998764
No 172
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=1.3e-05 Score=89.36 Aligned_cols=195 Identities=12% Similarity=0.064 Sum_probs=111.8
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++|++..++.+..++.. + ....+.|+|++|+||||+|+.+.+....... ..+ ..+.+..+.......
T Consensus 37 ~~i~g~~~~~~~l~~~l~~------~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~-~~~-~~~~~~~~~~~~~~~- 105 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKS------A--NLPHMLFYGPPGTGKTSTILALTKELYGPDL-MKS-RILELNASDERGISI- 105 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTC------T--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHH-HTT-SEEEECSSSCCCHHH-
T ss_pred HHhhCCHHHHHHHHHHHhc------C--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcc-ccc-ceEEEccccccchHH-
Confidence 4689999999999998865 1 1122889999999999999999876421000 011 122333333223222
Q ss_pred HHHHHHHhcCC-CCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChh-hhhh-
Q 047598 258 SKALLESITRK-PCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSH-VAST- 334 (1112)
Q Consensus 258 ~~~il~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~- 334 (1112)
.++.+..+... ....... .....-.+++-+|++|++..........+...+.......++|++|.... +...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l 180 (353)
T 1sxj_D 106 VREKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL 180 (353)
T ss_dssp HTTHHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchh
Confidence 22222222111 0000000 00111124567999999976655555556655554445667777775442 2111
Q ss_pred cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 335 MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 335 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
......+.+.+++.++..+.+...+...... ..++..+.|++.++|.|-.+..+
T Consensus 181 ~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~----i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 181 ASQCSKFRFKALDASNAIDRLRFISEQENVK----CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHTTTCC----CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred hccCceEEeCCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1122478999999999999988876432221 11345688999999998765443
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.13 E-value=4.2e-05 Score=86.80 Aligned_cols=176 Identities=18% Similarity=0.178 Sum_probs=100.1
Q ss_pred cceecchhhH---HHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC-CC
Q 047598 178 RAVYGRDKDK---ARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV-FD 253 (1112)
Q Consensus 178 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~-~~ 253 (1112)
..++|.+..+ ..+...+.. +....+.|+|.+|+||||+|+.+++... ..| +.++.. ..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~--------~~~~~vLL~GppGtGKTtlAr~ia~~~~-----~~f-----~~l~a~~~~ 87 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA--------GHLHSMILWGPPGTGKTTLAEVIARYAN-----ADV-----ERISAVTSG 87 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH--------TCCCEEEEECSTTSSHHHHHHHHHHHTT-----CEE-----EEEETTTCC
T ss_pred HHhCCcHHHHhchHHHHHHHHc--------CCCcEEEEECCCCCcHHHHHHHHHHHhC-----CCe-----EEEEeccCC
Confidence 4688988877 677777755 2346789999999999999999998653 222 222221 12
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEE-EcCChh--
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMII-TTRHSH-- 330 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~-- 330 (1112)
... .+.++... ......+++.+|++|++........+.+...+.. ....+|. ||.+..
T Consensus 88 ~~~-ir~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~ 148 (447)
T 3pvs_A 88 VKE-IREAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFE 148 (447)
T ss_dssp HHH-HHHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGS
T ss_pred HHH-HHHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccc
Confidence 221 12222111 0111246789999999976543333334443333 1233443 555442
Q ss_pred hh-hhcCCCceeeCCCCChHhHHHHHHHhHhCCCCC---CCchhHHHHHHHHHhhcCCchHHHH
Q 047598 331 VA-STMGPIKHYNLKRLLDEDCWSIFIKHAYESRSL---KAHQISELFRKKVVGKCGGLPLAAK 390 (1112)
Q Consensus 331 v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~---~~~~~~~~~~~~i~~~c~glPlai~ 390 (1112)
+. ........+.+.+++.++..+++.+.+...... ......++..+.|++.++|.+-.+.
T Consensus 149 l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 149 LNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp SCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred cCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 11 112234578899999999999998876531110 1112234456778888999775443
No 174
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=2.9e-05 Score=86.52 Aligned_cols=199 Identities=10% Similarity=0.050 Sum_probs=106.3
Q ss_pred cceecchhhHHHHHHHH-hcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccC-CCCce-------------
Q 047598 178 RAVYGRDKDKARILKMV-LSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKD-FKFDI------------- 242 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-~~F~~------------- 242 (1112)
..++|.+...+.+..++ .. + .... +.|+|+.|+||||+|+.++........+ -.++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~ 85 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLEL 85 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------
T ss_pred HHhcCCHHHHHHHHHHHhhC------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccccee
Confidence 46889999888888777 33 1 1223 8999999999999999887742110000 00000
Q ss_pred -------eEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhccc
Q 047598 243 -------KAWVCISDVF-DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLL 314 (1112)
Q Consensus 243 -------~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 314 (1112)
.+.+..+... ......+++++.+..... ..... .+.. +.+++-++|+|++..-+......+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 86 NVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred eeecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 1111111100 000012223332221110 00000 0000 23467799999998766555556666555
Q ss_pred CCCCCcEEEEEcCChh-hhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHH
Q 047598 315 AAAPNSKMIITTRHSH-VAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSL 392 (1112)
Q Consensus 315 ~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 392 (1112)
....+..+|++|.... +... ......+.+.+++.++..+.+...+...+..-+. ++....|++.++|.+-.+..+
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHH
Confidence 4445677888776542 2221 1233678999999999999998776432221110 234677889999988655444
Q ss_pred h
Q 047598 393 G 393 (1112)
Q Consensus 393 ~ 393 (1112)
.
T Consensus 237 l 237 (354)
T 1sxj_E 237 L 237 (354)
T ss_dssp H
T ss_pred H
Confidence 3
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.11 E-value=3.5e-05 Score=82.77 Aligned_cols=186 Identities=17% Similarity=0.116 Sum_probs=100.4
Q ss_pred CcceecchhhHHHHHHHHhcCCCC-----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEK-----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
-..++|.+..++++.+.+...-.. ..+....+-+.|+|++|+|||++|+.+++.... .| +.+..+..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~---~~v~~~~~ 87 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TF---IRVVGSEL 87 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EE---EEEEGGGG
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CE---EEEehHHH
Confidence 356899999999998876431000 000122346889999999999999999986532 12 22332211
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC-----------Ch---hhHHHHHhccc--C
Q 047598 252 FDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNE-----------DY---SLWVDLKAPLL--A 315 (1112)
Q Consensus 252 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~---~~~~~l~~~l~--~ 315 (1112)
.. .. ...........+......++.+|+||+++.. .. .....+...+. .
T Consensus 88 ~~--------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 88 VK--------------KF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp CC--------------CS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred HH--------------hc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 10 00 0001111222223333456789999999532 11 11122222222 1
Q ss_pred CCCCcEEEEEcCChhhhhh--c---CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCC-chHHH
Q 047598 316 AAPNSKMIITTRHSHVAST--M---GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGG-LPLAA 389 (1112)
Q Consensus 316 ~~~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai 389 (1112)
...+..||.||........ . .-...+.+...+.++..++|...+..... ..... ...+++.+.| .|-.+
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAEL 227 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHH
Confidence 2345678888876533221 1 12246889999999999999887644322 12222 3556666666 44343
Q ss_pred H
Q 047598 390 K 390 (1112)
Q Consensus 390 ~ 390 (1112)
.
T Consensus 228 ~ 228 (285)
T 3h4m_A 228 K 228 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 176
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.02 E-value=6.6e-05 Score=84.11 Aligned_cols=194 Identities=16% Similarity=0.119 Sum_probs=104.4
Q ss_pred CcceecchhhHHH---HHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEe----C
Q 047598 177 ERAVYGRDKDKAR---ILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCI----S 249 (1112)
Q Consensus 177 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~----~ 249 (1112)
-..++|++..++. +...+.. +....+.+.|+|++|+|||++|+.+++..... ..| +.+.. +
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~---~~~~~~~~~~ 110 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIRE------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD---TPF---TAIAGSEIFS 110 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHT------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS---CCE---EEEEGGGGSC
T ss_pred hhhccChHHHHHHHHHHHHHHHc------CCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---CCc---ccccchhhhh
Confidence 3479999988776 4444443 22233688999999999999999999875321 112 11221 1
Q ss_pred CCCCHHHHHHHHHHHhcC---------------------CC--------C-CCCChHHHHHHHHHHh-----CCC----c
Q 047598 250 DVFDVLSISKALLESITR---------------------KP--------C-HLNTLNEVQVDLKTAV-----DGK----R 290 (1112)
Q Consensus 250 ~~~~~~~~~~~il~~l~~---------------------~~--------~-~~~~~~~~~~~l~~~l-----~~k----r 290 (1112)
......+.....+..... .. . ...........+.... .++ +
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 222333333333332110 00 0 0000122222221111 233 3
Q ss_pred EEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC-----------------hhhhhhcCCCceeeCCCCChHhHHH
Q 047598 291 FLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH-----------------SHVASTMGPIKHYNLKRLLDEDCWS 353 (1112)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~ 353 (1112)
.+|++|++..........+...+...... .++++|.. +.+.+. ...+.+.+++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHH
Confidence 59999999876655555555555433223 34444431 122222 2457999999999999
Q ss_pred HHHHhHhCCCCCCCchhHHHHHHHHHhhcC-CchHHHH
Q 047598 354 IFIKHAYESRSLKAHQISELFRKKVVGKCG-GLPLAAK 390 (1112)
Q Consensus 354 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~-glPlai~ 390 (1112)
++...+...... .-.+....|++.+. |.|-.+.
T Consensus 267 il~~~~~~~~~~----~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 267 ILRIRCEEEDVE----MSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHHHTTCC----BCHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHhcCCCHHHHH
Confidence 998876543221 12335677888886 6665443
No 177
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.01 E-value=4.1e-05 Score=83.36 Aligned_cols=162 Identities=15% Similarity=0.066 Sum_probs=90.5
Q ss_pred ceecchhhHHHHHHHHhcCC-------CCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 179 AVYGRDKDKARILKMVLSTD-------EKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
.++|.+..++.+.+++.... ...........+.|+|.+|+|||++|+.+++..... ......-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~---~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRL---GYVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHT---TSSSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhc---CCcCCCcEEEEcHH
Confidence 47888888888776653200 000012344578999999999999999887764322 11111112333211
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC---------ChhhHHHHHhcccCCCCCcEE
Q 047598 252 FDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNE---------DYSLWVDLKAPLLAAAPNSKM 322 (1112)
Q Consensus 252 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~i 322 (1112)
.+.... ...........+... +..+|++|+++.. .......+...+.....+..|
T Consensus 109 ------------~l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 109 ------------DLVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp ------------GTCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred ------------Hhhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 010000 011111222222222 3459999999733 334445555555555556788
Q ss_pred EEEcCChh----------hhhhcCCCceeeCCCCChHhHHHHHHHhHhC
Q 047598 323 IITTRHSH----------VASTMGPIKHYNLKRLLDEDCWSIFIKHAYE 361 (1112)
Q Consensus 323 ivTTR~~~----------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 361 (1112)
|.||.... +...+ ...+.+.+++.++-.+++...+..
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHHH
Confidence 88886432 22222 267899999999999999887654
No 178
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.98 E-value=6.3e-05 Score=82.46 Aligned_cols=177 Identities=17% Similarity=0.111 Sum_probs=101.5
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
-..++|.+..+..+.+++.. +....++.+.|++|+|||++|+.+++... ...+.+..+.. .. .
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~-------~~~~~~~L~~G~~G~GKT~la~~la~~l~--------~~~~~i~~~~~-~~-~ 87 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSK-------GKIPHIILHSPSPGTGKTTVAKALCHDVN--------ADMMFVNGSDC-KI-D 87 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHT-------TCCCSEEEECSSTTSSHHHHHHHHHHHTT--------EEEEEEETTTC-CH-H
T ss_pred HHHHhCcHHHHHHHHHHHHc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC--------CCEEEEccccc-CH-H
Confidence 35689999999999999875 12235778889899999999999987642 12344444332 22 2
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-hhhHHHHHhcccCCCCCcEEEEEcCChhh-hhh
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED-YSLWVDLKAPLLAAAPNSKMIITTRHSHV-AST 334 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~~ 334 (1112)
..+..+....... ...+++-+||+|++.... ......+...+.....+.++|+||....- ...
T Consensus 88 ~i~~~~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~ 152 (324)
T 3u61_B 88 FVRGPLTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKP 152 (324)
T ss_dssp HHHTHHHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTT
T ss_pred HHHHHHHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHH
Confidence 2222222111000 012468899999997654 44444455444333345688888876431 111
Q ss_pred -cCCCceeeCCCCChHhHHHH-------HHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHH
Q 047598 335 -MGPIKHYNLKRLLDEDCWSI-------FIKHAYESRSLKAHQISELFRKKVVGKCGGLPLA 388 (1112)
Q Consensus 335 -~~~~~~~~l~~L~~~~~~~L-------f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 388 (1112)
......+.+.+++.++-.++ +...+......-++ .+....|++.++|.+-.
T Consensus 153 l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 153 LQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTH
T ss_pred HHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHH
Confidence 11124789999998874333 22222211111111 13567788888886653
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.95 E-value=0.0001 Score=77.94 Aligned_cols=183 Identities=14% Similarity=0.132 Sum_probs=96.0
Q ss_pred cceecchhhHHHHHHHHhcC--CCC--CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMVLST--DEK--TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~--~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
..++|.+..++.+.+++... .+. ..+....+-+.|+|++|+|||++|+.+++... .. .+.+..+...+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~---~~~~~~~~~~~ 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ-----VP---FLAMAGAEFVE 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CC---EEEEETTTTSS
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CC---EEEechHHHHh
Confidence 45889988887776654210 000 00112334578999999999999999998643 11 23344433211
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC---------------hhhHHHHHhcccC--C
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED---------------YSLWVDLKAPLLA--A 316 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------------~~~~~~l~~~l~~--~ 316 (1112)
. ............+.......+.+|++|+++... ......+...+.. .
T Consensus 78 ~---------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 V---------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp S---------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred h---------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0 000111122222333334567899999997531 0112223332222 1
Q ss_pred CCCcEEEEEcCChhhhh-h-c---CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch
Q 047598 317 APNSKMIITTRHSHVAS-T-M---GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 317 ~~gs~iivTTR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1112)
..+..||.||....... . . .-...+.+...+.++-.+++...+...... ... ......+++.+.|.+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~--~~~~~~l~~~~~g~~ 214 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSS--TFYSQRLAELTPGFS 214 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTH--HHHHHHHHHTCTTCC
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cch--hhHHHHHHHHCCCCC
Confidence 23456777776544221 1 1 122567889999999999998876443221 111 123467778887764
No 180
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.94 E-value=2.4e-07 Score=103.40 Aligned_cols=104 Identities=17% Similarity=0.150 Sum_probs=49.7
Q ss_pred CcccEEEeccccccccc-----cccc-CCCcCcEEEcccccccc--ccccccCCCCCcEEeecCCCCCcccC-ccc----
Q 047598 592 KRLRVLSLQRYYIGELL-----VSFE-DLKLLRYLNLADTMIRT--LPESTNSLLNLEILILRNCSRLKKLP-SKM---- 658 (1112)
Q Consensus 592 ~~L~~L~L~~~~~~~lp-----~~~~-~l~~Lr~L~Ls~n~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i---- 658 (1112)
+.|+.|+|++|.++... ..+. ...+|++|+|++|.+.. +..-...+.+|++|+|++| .++... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 45666677666654321 1122 22566677777666642 1111234556667777666 333211 111
Q ss_pred -cCCccccEEeecCCCccc----cCCCCCCCCCCCCccCeeee
Q 047598 659 -RNLINLHHLDIKGANLLR----EMPLGMKELKNLRTLSNFIV 696 (1112)
Q Consensus 659 -~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~~~~~ 696 (1112)
...++|++|+|++|.+.. .++..+..+++|++|++.+|
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 234566666666665311 12222334445555554443
No 181
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.94 E-value=0.0001 Score=78.34 Aligned_cols=195 Identities=15% Similarity=0.130 Sum_probs=100.7
Q ss_pred ceecchhhHHHHHH-------HHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 179 AVYGRDKDKARILK-------MVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
.++|.....++++. .+.. . .....+-+.|+|.+|+|||++|+.+++... ..| +.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~-~----~~~~~~~vLl~G~~GtGKT~la~~ia~~~~-----~~~---~~i~~~~~ 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKN-S----DRTPLVSVLLEGPPHSGKTALAAKIAEESN-----FPF---IKICSPDK 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHH-C----SSCSEEEEEEECSTTSSHHHHHHHHHHHHT-----CSE---EEEECGGG
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhc-c----CCCCCeEEEEECCCCCcHHHHHHHHHHHhC-----CCE---EEEeCHHH
Confidence 46777776666655 3321 0 134567899999999999999999998632 222 12222210
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC---------ChhhHHH-HHhcccC---CCC
Q 047598 252 FDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNE---------DYSLWVD-LKAPLLA---AAP 318 (1112)
Q Consensus 252 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~-l~~~l~~---~~~ 318 (1112)
+... ............+......+..+|+||+++.. ....+.. +...+.. ...
T Consensus 101 -------------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~ 166 (272)
T 1d2n_A 101 -------------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGR 166 (272)
T ss_dssp -------------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTC
T ss_pred -------------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCC
Confidence 0000 00000112222333344567899999998532 0122222 2222221 223
Q ss_pred CcEEEEEcCChhhhhh---cC-CCceeeCCCCCh-HhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCC------chH
Q 047598 319 NSKMIITTRHSHVAST---MG-PIKHYNLKRLLD-EDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGG------LPL 387 (1112)
Q Consensus 319 gs~iivTTR~~~v~~~---~~-~~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPl 387 (1112)
...||.||........ .+ -...+.+.+++. ++..+++.... . .. .+....|++.+.| .+-
T Consensus 167 ~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g~~~~g~ir~ 237 (272)
T 1d2n_A 167 KLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKGKKVWIGIKK 237 (272)
T ss_dssp EEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTTSEEEECHHH
T ss_pred CEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcCCCccccHHH
Confidence 3456777877644332 11 135678888988 66666655421 1 11 2245677777777 455
Q ss_pred HHHHHhhhhcCCCHHHHHHHHh
Q 047598 388 AAKSLGGLLRTTRCDLWEDILD 409 (1112)
Q Consensus 388 ai~~~~~~l~~~~~~~w~~~l~ 409 (1112)
++.++-.+........+..++.
T Consensus 238 l~~~l~~a~~~~~~~~~~~~~~ 259 (272)
T 1d2n_A 238 LLMLIEMSLQMDPEYRVRKFLA 259 (272)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHhhhchHHHHHHHHH
Confidence 5555544433233344554443
No 182
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.94 E-value=0.00021 Score=78.39 Aligned_cols=176 Identities=12% Similarity=0.057 Sum_probs=104.0
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc-----------------CCCCceeEEE
Q 047598 184 DKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAK-----------------DFKFDIKAWV 246 (1112)
Q Consensus 184 ~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~~~F~~~~wv 246 (1112)
++..+.+...+.. +.-...+.++|+.|+|||++|+.+.+...-... +.+++. .++
T Consensus 8 ~~~~~~l~~~i~~-------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~ 79 (334)
T 1a5t_A 8 RPDFEKLVASYQA-------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTL 79 (334)
T ss_dssp HHHHHHHHHHHHT-------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEE
T ss_pred HHHHHHHHHHHHc-------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEE
Confidence 4556667776654 122457889999999999999998875432100 011221 222
Q ss_pred EeC---CCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEE
Q 047598 247 CIS---DVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMI 323 (1112)
Q Consensus 247 ~~~---~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 323 (1112)
... ....+. ..+++.+.+.... ..+++-++|+|+++.......+.+...+.....++.+|
T Consensus 80 ~~~~~~~~~~i~-~ir~l~~~~~~~~----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 80 APEKGKNTLGVD-AVREVTEKLNEHA----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CCCTTCSSBCHH-HHHHHHHHTTSCC----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred eccccCCCCCHH-HHHHHHHHHhhcc----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 221 111111 1122222221110 13567899999998766556666766665555567777
Q ss_pred EEcCChh-hhhh-cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHHHh
Q 047598 324 ITTRHSH-VAST-MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKSLG 393 (1112)
Q Consensus 324 vTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 393 (1112)
++|.... +... ......+.+.+++.++..+.+.... . -+ .+.+..+++.++|.|..+..+.
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T-MS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-CC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 7776653 2222 2234578999999999999888764 1 11 2345778899999997665443
No 183
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.93 E-value=0.00023 Score=80.37 Aligned_cols=87 Identities=10% Similarity=0.175 Sum_probs=53.8
Q ss_pred ccccccccCCcccEEEecccc---ccccc-ccccCCCcCcEEEccccccccccc-cccCCCCCcEEeecCCCCCcccCc-
Q 047598 583 VLSDLLPKFKRLRVLSLQRYY---IGELL-VSFEDLKLLRYLNLADTMIRTLPE-STNSLLNLEILILRNCSRLKKLPS- 656 (1112)
Q Consensus 583 ~~~~~~~~~~~L~~L~L~~~~---~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~- 656 (1112)
+...+|.++.+|+.+.+..+. +..+. .+|.++.+|+.+.+..+ +..++. .|..+.+|+.+.+..+ +..++.
T Consensus 78 Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~ 154 (394)
T 4gt6_A 78 IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADG 154 (394)
T ss_dssp ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTT
T ss_pred EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce--eeeeccc
Confidence 445567777788887777653 45554 45777777777666554 444443 3566777777777643 333333
Q ss_pred cccCCccccEEeecCC
Q 047598 657 KMRNLINLHHLDIKGA 672 (1112)
Q Consensus 657 ~i~~L~~L~~L~L~~~ 672 (1112)
.+..+.+|+.+.+..+
T Consensus 155 ~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 155 MFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTCTTCCEEECCTT
T ss_pred ceecccccccccccce
Confidence 4566777777766544
No 184
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.89 E-value=9.3e-07 Score=98.61 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=60.0
Q ss_pred ccCCcccEEEeccccccccc-----ccc-cCCCcCcEEEcccccccc-----ccccccCCCCCcEEeecCCCCCcc----
Q 047598 589 PKFKRLRVLSLQRYYIGELL-----VSF-EDLKLLRYLNLADTMIRT-----LPESTNSLLNLEILILRNCSRLKK---- 653 (1112)
Q Consensus 589 ~~~~~L~~L~L~~~~~~~lp-----~~~-~~l~~Lr~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~---- 653 (1112)
..+++|+.|+|++|.++... ..+ ....+|++|+|++|.+.. ++..+..+++|++|+|++| .++.
T Consensus 123 ~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~ 201 (372)
T 3un9_A 123 PVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLE 201 (372)
T ss_dssp HHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHH
T ss_pred HHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHH
Confidence 34456677777777664321 112 234567777777776642 4444556666777777776 3432
Q ss_pred -cCccccCCccccEEeecCCCccc----cCCCCCCCCCCCCccCeeeecc
Q 047598 654 -LPSKMRNLINLHHLDIKGANLLR----EMPLGMKELKNLRTLSNFIVGK 698 (1112)
Q Consensus 654 -lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~~~~~~~ 698 (1112)
++..+...++|++|+|++|.+.. .++..+...++|++|++.+|.+
T Consensus 202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 33445556667777777766321 1222334456666666665543
No 185
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.86 E-value=2.9e-05 Score=73.45 Aligned_cols=114 Identities=15% Similarity=-0.014 Sum_probs=69.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHH
Q 047598 179 AVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSIS 258 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 258 (1112)
.++|+...+.++.+.+.... ....-|.|+|.+|+|||++|+.+++..... +..| + +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~--~~~~---v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS------ETDIAVWLYGAPGTGRMTGARYLHQFGRNA--QGEF---V-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT------TCCSCEEEESSTTSSHHHHHHHHHHSSTTT--TSCC---E-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh------CCCCCEEEECCCCCCHHHHHHHHHHhCCcc--CCCE---E-EECCCCCcc----
Confidence 57899999999988875411 112346899999999999999999864321 0222 2 555443221
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCC
Q 047598 259 KALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRH 328 (1112)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 328 (1112)
.... ..+... ..-.|+||+++.........+...+.......++|.||..
T Consensus 66 --------------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 --------------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp --------------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred --------------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0111 111111 2346899999877655555666655444455678888764
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.86 E-value=7.3e-05 Score=81.91 Aligned_cols=153 Identities=16% Similarity=0.124 Sum_probs=85.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
...+.|+|++|+||||||+.+++..... . ..+++++. .++...+...+... .... +...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~----~-~~~~~i~~------~~~~~~~~~~~~~~-----~~~~----~~~~~ 96 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR----G-YRVIYSSA------DDFAQAMVEHLKKG-----TINE----FRNMY 96 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT----T-CCEEEEEH------HHHHHHHHHHHHHT-----CHHH----HHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC----C-CEEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHh
Confidence 4578899999999999999999865311 1 12344443 23334444433211 1111 22222
Q ss_pred CCCcEEEEEeCCCCCCh--hhHHHHHhcccC-CCCCcEEEEEcCChh---------hhhhcCCCceeeCCCCChHhHHHH
Q 047598 287 DGKRFLLVLDDVWNEDY--SLWVDLKAPLLA-AAPNSKMIITTRHSH---------VASTMGPIKHYNLKRLLDEDCWSI 354 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~L 354 (1112)
. +..+|++||+..... .....+...+.. ...|..||+||.... +...+.....+.+.+ +.++..++
T Consensus 97 ~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 97 K-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKI 174 (324)
T ss_dssp H-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHH
T ss_pred c-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHH
Confidence 2 366999999965432 112223333221 124567888876431 222333335689999 99999999
Q ss_pred HHHhHhCCCCCCCchhHHHHHHHHHhhcCCch
Q 047598 355 FIKHAYESRSLKAHQISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 355 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1112)
+...+......-+ ++....|++.+ |.+
T Consensus 175 l~~~~~~~~~~l~----~~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 175 IKEKLKEFNLELR----KEVIDYLLENT-KNV 201 (324)
T ss_dssp HHHHHHHTTCCCC----HHHHHHHHHHC-SSH
T ss_pred HHHHHHhcCCCCC----HHHHHHHHHhC-CCH
Confidence 9887753322111 23456677777 654
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.85 E-value=0.00014 Score=79.43 Aligned_cols=188 Identities=12% Similarity=0.062 Sum_probs=103.0
Q ss_pred cceecchhhHHHHHHHHhcC---CC-CCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMVLST---DE-KTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~---~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
..++|.+..++.+.+++..+ .+ -.......+-+.++|++|+|||+||+++++... ..| +.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~---~~v~~~---- 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STF---FSVSSS---- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT-----CEE---EEEEHH----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC-----CCE---EEEchH----
Confidence 46899999999998877210 00 000122345688999999999999999998643 222 222221
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHH-HHHHHhCCCcEEEEEeCCCCCCh-----------hhHHHHHhccc---CCCC
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQV-DLKTAVDGKRFLLVLDDVWNEDY-----------SLWVDLKAPLL---AAAP 318 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~ 318 (1112)
++ .... ......... .+...-..++.+|+||+++.... .....+...+. ....
T Consensus 86 --~l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 --DL----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp --HH----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred --HH----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11 1000 011122222 22222345678999999964211 11223333222 2334
Q ss_pred CcEEEEEcCChhhhhh-c--CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCC-chHHHHHHh
Q 047598 319 NSKMIITTRHSHVAST-M--GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGG-LPLAAKSLG 393 (1112)
Q Consensus 319 gs~iivTTR~~~v~~~-~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~ 393 (1112)
+..||.||........ + .-...+.+...+.++-.++|..++........ ......|++.+.| .+-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566667765433211 0 12356788889999999999887754322112 2235678888877 454454443
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.85 E-value=0.00063 Score=73.93 Aligned_cols=190 Identities=15% Similarity=0.084 Sum_probs=101.7
Q ss_pred cceecchhhHHHHHHHHhcC---CCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMVLST---DEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~---~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
..++|.+..++.+.+.+..+ .+- .......+-|.++|++|+|||+||+++++...- .. .+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~---~~~i~~~~l~~ 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----ST---FFSISSSDLVS 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CE---EEEEECCSSCC
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----Cc---EEEEEhHHHHh
Confidence 46889999888888766310 000 001223467889999999999999999986410 11 22333332211
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-------hhh----HHHHHhcccC---CCCC
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED-------YSL----WVDLKAPLLA---AAPN 319 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~~----~~~l~~~l~~---~~~g 319 (1112)
.. ...........+...-..++.+|++|+++... ... ...+...+.. ...+
T Consensus 85 --------------~~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 --------------KW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp --------------SS-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred --------------hh-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 00 01111222222222234578899999996420 011 1122222222 2244
Q ss_pred cEEEEEcCChhhhhh-c--CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCc-hHHHHHHh
Q 047598 320 SKMIITTRHSHVAST-M--GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGL-PLAAKSLG 393 (1112)
Q Consensus 320 s~iivTTR~~~v~~~-~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 393 (1112)
..||.||........ + .-...+.+...+.++-.+++..+......... ......|++.+.|. +-.|..+.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666754432211 0 22356788888888888999887643221111 23457788888886 44455544
No 189
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=1.3e-05 Score=76.98 Aligned_cols=93 Identities=9% Similarity=0.031 Sum_probs=67.4
Q ss_pred CceeEEEEcCcCCCC-CCCCCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCc
Q 047598 802 SKMEVLKLENCWNCT-SLPSLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDH 880 (1112)
Q Consensus 802 ~~L~~L~L~~~~~~~-~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 880 (1112)
.+|+.|+|++|.+.. .+..+..+++|+.|+|++|..+++.+....... ....++|+.|++++|+.+..-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-~~~~~~L~~L~Ls~C~~ITD~Gl------- 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-ENLQKSMLEMEIISCGNVTDKGI------- 132 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-HHHHHHCCEEEEESCTTCCHHHH-------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-ccccCCCCEEEcCCCCcCCHHHH-------
Confidence 469999999998653 355778999999999999998877544333210 00135799999999887654322
Q ss_pred CCcccCCCccceEeEecCCCCCC
Q 047598 881 ADRVEIFPRLHKLSIMECPKLSG 903 (1112)
Q Consensus 881 ~~~~~~~p~L~~L~l~~c~~L~~ 903 (1112)
..+..+++|++|++++|+.+++
T Consensus 133 -~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 -IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -HHGGGCTTCCEEEEESCTTCCC
T ss_pred -HHHhcCCCCCEEECCCCCCCCc
Confidence 1235689999999999998884
No 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.76 E-value=0.00028 Score=77.88 Aligned_cols=189 Identities=13% Similarity=0.053 Sum_probs=100.0
Q ss_pred cceecchhhHHHHHHHHhcC---CCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMVLST---DEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~---~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
..++|.+..++.+.+.+..+ .+- .......+-|.|+|++|+|||+||+.+++... ..| +.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~---~~v~~~---- 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STF---FSVSSS---- 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT-----CEE---EEEEHH----
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCE---EEeeHH----
Confidence 46899999999988876310 000 00112234578999999999999999998653 112 222221
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChh-----------hHHHHHhccc---CCCCC
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYS-----------LWVDLKAPLL---AAAPN 319 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~g 319 (1112)
++. ... ...........+...-..++.+|+||+++..... ....+...+. ....+
T Consensus 119 --~l~----~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 --DLV----SKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp --HHH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred --HHh----hhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 111 100 0011111222222223457899999999753210 1122222222 12245
Q ss_pred cEEEEEcCChhhhh-hc--CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCC-chHHHHHHh
Q 047598 320 SKMIITTRHSHVAS-TM--GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGG-LPLAAKSLG 393 (1112)
Q Consensus 320 s~iivTTR~~~v~~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~ 393 (1112)
..||.||....... .+ .-...+.+...+.++-.+++..+......... ......|++.+.| .+-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 56666776543211 00 22356788888999999999887643321111 2234678888887 454454443
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=0.00031 Score=77.43 Aligned_cols=181 Identities=13% Similarity=0.141 Sum_probs=103.1
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCc-eeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFD-IKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~ 256 (1112)
..++|.+..++.+..++.. + ....+.++|+.|+||||+|+.+++...- ..+. .+..+..+.......
T Consensus 25 ~~~~g~~~~~~~L~~~i~~------g--~~~~~ll~Gp~G~GKTtla~~la~~l~~----~~~~~~~~~~~~~~~~~~~~ 92 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDE------G--KLPHLLFYGPPGTGKTSTIVALAREIYG----KNYSNMVLELNASDDRGIDV 92 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHT------T--CCCCEEEECSSSSSHHHHHHHHHHHHHT----TSHHHHEEEECTTSCCSHHH
T ss_pred HHhcCcHHHHHHHHHHHhc------C--CCceEEEECCCCCCHHHHHHHHHHHHcC----CCccceEEEEcCcccccHHH
Confidence 4578988888888888865 1 2222889999999999999999876421 1111 112222222212211
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChh-hhhh-
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSH-VAST- 334 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~- 334 (1112)
+ +..+..+.... ....+.+-++|+|++..........+...+.......++|++|.... +...
T Consensus 93 i-r~~i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i 157 (340)
T 1sxj_C 93 V-RNQIKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPAL 157 (340)
T ss_dssp H-HTHHHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred H-HHHHHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhH
Confidence 1 11111111000 00123477899999976555555555555544445667777775432 1111
Q ss_pred cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHH
Q 047598 335 MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAA 389 (1112)
Q Consensus 335 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 389 (1112)
......+.+.+++.++..+.+...+-.... . ..+...+.|++.++|.+--+
T Consensus 158 ~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~-~---i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 158 LSQCTRFRFQPLPQEAIERRIANVLVHEKL-K---LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHTTTC-C---BCHHHHHHHHHHHTTCHHHH
T ss_pred HhhceeEeccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 122347889999999988888776532221 1 11235677888899877643
No 192
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.68 E-value=0.00053 Score=75.82 Aligned_cols=189 Identities=13% Similarity=0.061 Sum_probs=101.6
Q ss_pred cceecchhhHHHHHHHHhcC----CCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMVLST----DEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~----~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
..++|.+..++.+.+.+..+ +.-.......+-|.|+|.+|+|||++|+.+++... . ..+.+..+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~-----~---~~~~i~~~~l~~ 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG-----A---TFFSISASSLTS 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT-----C---EEEEEEGGGGCC
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC-----C---eEEEEehHHhhc
Confidence 46899999999988876420 00000012345788999999999999999987642 1 123444432211
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHH-HHHHhCCCcEEEEEeCCCCCC-----------hhhHHHHHhcccC----CC
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVD-LKTAVDGKRFLLVLDDVWNED-----------YSLWVDLKAPLLA----AA 317 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~ 317 (1112)
. . .......... +...-..++.+|+||+++... ......+...+.. ..
T Consensus 156 ~--------------~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 K--------------W--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp S--------------S--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred c--------------c--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 0 0011111111 222223567899999994210 0112233333322 12
Q ss_pred CCcEEEEEcCChhhhh-hc--CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCC-chHHHHHHh
Q 047598 318 PNSKMIITTRHSHVAS-TM--GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGG-LPLAAKSLG 393 (1112)
Q Consensus 318 ~gs~iivTTR~~~v~~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~ 393 (1112)
.+..||.||....... .. .-...+.+...+.++..+++...+...... ........|++.+.| .+-+|..+.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC----LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC----CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC----ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3445666675542211 11 122467888889998888888776432211 112345778888888 555666554
Q ss_pred h
Q 047598 394 G 394 (1112)
Q Consensus 394 ~ 394 (1112)
.
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 193
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=6.7e-06 Score=85.66 Aligned_cols=104 Identities=20% Similarity=0.167 Sum_probs=59.7
Q ss_pred cccCCcccE--EEecccccccccc----cccCCCcCcEEEcccccccccc---ccccCCCCCcEEeecCCCCCcccCccc
Q 047598 588 LPKFKRLRV--LSLQRYYIGELLV----SFEDLKLLRYLNLADTMIRTLP---ESTNSLLNLEILILRNCSRLKKLPSKM 658 (1112)
Q Consensus 588 ~~~~~~L~~--L~L~~~~~~~lp~----~~~~l~~Lr~L~Ls~n~i~~lp---~~i~~L~~L~~L~L~~~~~l~~lp~~i 658 (1112)
|...+.|+. ++++.|....++. ...++++|+.|+|++|.|..++ ..+..+++|++|+|++| .+..+. .+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-EL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hh
Confidence 333444444 4555554333321 1245667777777777776543 44567777777777776 555542 24
Q ss_pred cCCc--cccEEeecCCCccccCCC-------CCCCCCCCCccCe
Q 047598 659 RNLI--NLHHLDIKGANLLREMPL-------GMKELKNLRTLSN 693 (1112)
Q Consensus 659 ~~L~--~L~~L~L~~~~~l~~lp~-------~i~~l~~L~~L~~ 693 (1112)
..+. +|++|+|++|.+...+|. .+..+++|+.|+.
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4444 777777777775444442 1455666666654
No 194
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.66 E-value=0.0011 Score=74.85 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=25.6
Q ss_pred CCCCCCeEEeecCCCCCcCCC--CCCCCCccEEEEccCcc
Q 047598 1035 LMTSLEYLWIKNCPNLASFPE--LGLPSSLTQLYIDHCPL 1072 (1112)
Q Consensus 1035 ~l~~L~~L~ls~c~~l~~lp~--~~~~~~L~~L~l~~c~~ 1072 (1112)
+|.+|+.+.|..+ ++.++. +..+++|+.+++.++..
T Consensus 332 ~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 332 GCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCcee
Confidence 5778888888643 566664 66788888888887644
No 195
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.65 E-value=0.00087 Score=72.25 Aligned_cols=185 Identities=15% Similarity=0.092 Sum_probs=98.5
Q ss_pred cceecchhhHHHHHHHHhcCCC--C--CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDE--K--TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~--~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
..++|.+..++.+.+++..+.. . .......+.+.|+|++|+||||+|+.+++... .. .+.+..+....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~-----~~---~~~i~~~~l~~ 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS-----AT---FLNISAASLTS 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT-----CE---EEEEESTTTSS
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC-----CC---eEEeeHHHHhh
Confidence 4689999999998887632100 0 00012245788999999999999999998643 11 22344332211
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHH-HHHHHhCCCcEEEEEeCCCCCCh-----------hhHHHHHhc---ccCC--
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQV-DLKTAVDGKRFLLVLDDVWNEDY-----------SLWVDLKAP---LLAA-- 316 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~---l~~~-- 316 (1112)
. .......... .+......++.+|++|++..... .....+... ++..
T Consensus 93 --------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 --------------K--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp --------------S--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred --------------c--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 0011122222 22222345678999999964210 111112221 2111
Q ss_pred CCCcEEEEEcCChhh-----hhhcCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchH-HHH
Q 047598 317 APNSKMIITTRHSHV-----ASTMGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPL-AAK 390 (1112)
Q Consensus 317 ~~gs~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~ 390 (1112)
+.+..||.||..... ...+ ...+.+...+.++...++...+......-. ......|++.+.|.+- ++.
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHH
Confidence 134566777775432 2222 245677777888888888776543221111 2345678888888764 444
Q ss_pred HH
Q 047598 391 SL 392 (1112)
Q Consensus 391 ~~ 392 (1112)
.+
T Consensus 231 ~l 232 (297)
T 3b9p_A 231 AL 232 (297)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 196
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.64 E-value=6.4e-05 Score=74.77 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=38.2
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..++||+.+++.+.+.+.. ...+.+.|+|.+|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--------~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR--------RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhC--------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999854 223456899999999999999998764
No 197
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.64 E-value=3.1e-05 Score=74.41 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCCCeEEeecCCCCCc--CCCCCCCCCccEEEEccCcchH
Q 047598 1037 TSLEYLWIKNCPNLAS--FPELGLPSSLTQLYIDHCPLVK 1074 (1112)
Q Consensus 1037 ~~L~~L~ls~c~~l~~--lp~~~~~~~L~~L~l~~c~~l~ 1074 (1112)
++|++|+|++|+.+++ +..+..+++|+.|+|++|+.++
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 3567777777766655 2234456777777777777654
No 198
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.62 E-value=2.8e-05 Score=85.79 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=23.9
Q ss_pred CCceeEEEEcCcCCCCC----CC-CCCCCCCcceEEecCCC
Q 047598 801 FSKMEVLKLENCWNCTS----LP-SLGLLSSLRELTIQGLT 836 (1112)
Q Consensus 801 l~~L~~L~L~~~~~~~~----l~-~l~~l~~L~~L~L~~~~ 836 (1112)
+++|+.|+|+.|.+.+. ++ .+..+++|+.|+|++|.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 67788888877765432 22 33567888888888763
No 199
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=2.9e-05 Score=80.90 Aligned_cols=79 Identities=20% Similarity=0.193 Sum_probs=63.2
Q ss_pred ccCCcccEEEeccccccccc---ccccCCCcCcEEEccccccccccccccCCC--CCcEEeecCCCCCcccCc-------
Q 047598 589 PKFKRLRVLSLQRYYIGELL---VSFEDLKLLRYLNLADTMIRTLPESTNSLL--NLEILILRNCSRLKKLPS------- 656 (1112)
Q Consensus 589 ~~~~~L~~L~L~~~~~~~lp---~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp~------- 656 (1112)
..++.|++|+|++|.+..++ ..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46789999999999987654 5567899999999999999977 3455555 999999999965455552
Q ss_pred cccCCccccEEe
Q 047598 657 KMRNLINLHHLD 668 (1112)
Q Consensus 657 ~i~~L~~L~~L~ 668 (1112)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 367889999986
No 200
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.59 E-value=0.0051 Score=67.21 Aligned_cols=176 Identities=15% Similarity=0.160 Sum_probs=93.4
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
..++|.+..++.+...+..... .+.....+.|+|++|+||||||+.+++.... .|. ..-+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~---~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-----~~~----~~sg~~~~---- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM---RGEVLDHVLLAGPPGLGKTTLAHIIASELQT-----NIH----VTSGPVLV---- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH---HTCCCCCEEEESSTTSSHHHHHHHHHHHHTC-----CEE----EEETTTCC----
T ss_pred HHccCcHHHHHHHHHHHHHHHh---cCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEE----EEechHhc----
Confidence 4678888777777665543100 0123457899999999999999999986431 111 11111110
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCC------------------CC
Q 047598 258 SKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAA------------------PN 319 (1112)
Q Consensus 258 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~g 319 (1112)
...+.. .+...+ .++.++++|++........+.+...+.... +.
T Consensus 89 ----------------~~~~l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 89 ----------------KQGDMA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp ----------------SHHHHH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred ----------------CHHHHH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 011111 111122 234577889886543323333332221110 01
Q ss_pred cEEE-EEcCChhhhhhcC--CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHH
Q 047598 320 SKMI-ITTRHSHVASTMG--PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKS 391 (1112)
Q Consensus 320 s~ii-vTTR~~~v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1112)
..++ .|++...+..... ....+.+++.+.++-.+++.+.+..... ....+.+..|++.++|.|-.+.-
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHH
Confidence 1222 2444332221111 1235789999999999999887643221 12234578899999999965443
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.59 E-value=0.0013 Score=70.83 Aligned_cols=181 Identities=13% Similarity=0.087 Sum_probs=97.3
Q ss_pred cceecchhhHHHHHHHHhcCC-CC----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTD-EK----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~-~~----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..++|.+..++.+.+++..+- .. ..+-...+.+.|+|++|+|||+||+.+++... ..| +.++
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~-----i~v~--- 81 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANF-----ISIK--- 81 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEE-----EEEC---
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-----CCE-----EEEE---
Confidence 468899998888887764210 00 00012345789999999999999999998643 112 2222
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC--------------hhhHHHHHhcccC--C
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED--------------YSLWVDLKAPLLA--A 316 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~ 316 (1112)
..++..... +.. . ......+.......+.+|++|++.... ......+...+.. .
T Consensus 82 -~~~l~~~~~---g~~---~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 -GPELLTMWF---GES---E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp -HHHHHHHHH---TTC---T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred -hHHHHhhhc---Cch---H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 223322221 111 1 112222333334567999999996310 0112333333322 2
Q ss_pred CCCcEEEEEcCChhhhhh--cC---CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch
Q 047598 317 APNSKMIITTRHSHVAST--MG---PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 317 ~~gs~iivTTR~~~v~~~--~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1112)
..+..||.||........ .. -...+.+...+.++-.+++......... ..+... ..+++.+.|.|
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~s 221 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFS 221 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCC
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCC
Confidence 235577777766533211 11 2356889999999888888776643221 111222 34555666655
No 202
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.57 E-value=2.7e-05 Score=85.89 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=23.4
Q ss_pred CCCCCCeEEeecCCCCCc----CCC-CCCCCCccEEEEccCcc
Q 047598 1035 LMTSLEYLWIKNCPNLAS----FPE-LGLPSSLTQLYIDHCPL 1072 (1112)
Q Consensus 1035 ~l~~L~~L~ls~c~~l~~----lp~-~~~~~~L~~L~l~~c~~ 1072 (1112)
.+++|++|+|+.|..... ++. +..+++|+.|++++|..
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 467788888877743221 222 23467788888877753
No 203
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.56 E-value=0.0053 Score=68.72 Aligned_cols=69 Identities=10% Similarity=0.103 Sum_probs=32.8
Q ss_pred CCCCcCEEEEecCCCCcccCCCC--CCCCCCeEEEcCCcccccccccccCCCCCCcCEEEEcccCCccccccCcccccc
Q 047598 937 RLNFLEHLRIGQCPSILSFPEEG--FPTNLASLVIGGDVKMYKGLIQWGLHRLTALRRLEIDGCHDDEVECFPNEEMGV 1013 (1112)
Q Consensus 937 ~l~~L~~L~L~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~l~~l~~~~~~~ 1013 (1112)
.+++|+.+.+.++ .++.++... .+.+|+.+.|..+ ........|.++++|+++.|..+ ++.+....|.+
T Consensus 284 ~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~C~~L~~i~ip~~----v~~I~~~aF~~ 354 (379)
T 4h09_A 284 GCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA---LKTIQVYAFKNCKALSTISYPKS----ITLIESGAFEG 354 (379)
T ss_dssp TCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCCCCCCTT----CCEECTTTTTT
T ss_pred ccccccccccccc-ccceehhhhhcCCCCCCEEEcCcc---ccEEHHHHhhCCCCCCEEEECCc----cCEEchhHhhC
Confidence 4444555544433 233333332 2344555554333 11222345677777777777553 55555555443
No 204
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.55 E-value=1e-05 Score=80.27 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=44.9
Q ss_pred cccCCcccEEEeccc-cccc-----ccccccCCCcCcEEEcccccccc-----ccccccCCCCCcEEeecCCCCCcc---
Q 047598 588 LPKFKRLRVLSLQRY-YIGE-----LLVSFEDLKLLRYLNLADTMIRT-----LPESTNSLLNLEILILRNCSRLKK--- 653 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~-~~~~-----lp~~~~~l~~Lr~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~--- 653 (1112)
+...+.|+.|+|++| .++. +...+...++|++|+|++|.|.. +...+...++|++|+|++| .++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHH
Confidence 444556666666665 5432 23344555566666666665542 3333444556666666665 3332
Q ss_pred --cCccccCCccccEEee--cCCC
Q 047598 654 --LPSKMRNLINLHHLDI--KGAN 673 (1112)
Q Consensus 654 --lp~~i~~L~~L~~L~L--~~~~ 673 (1112)
+...+...++|++|+| ++|.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHhCCCceEEEecCCCCC
Confidence 3344555556666666 4454
No 205
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.54 E-value=0.00087 Score=75.22 Aligned_cols=190 Identities=15% Similarity=0.075 Sum_probs=98.8
Q ss_pred CcceecchhhHHHHHHHHhcCC---CC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 177 ERAVYGRDKDKARILKMVLSTD---EK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~---~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
-..++|.+..++.+..++.... +- .......+-|.|+|.+|+|||++|+.+++.... ..+.+..+...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~--------~~~~v~~~~l~ 185 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA--------TFFNISAASLT 185 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC--------EEEEECSCCC-
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC--------cEEEeeHHHhh
Confidence 3579999999999988773200 00 000122457889999999999999999876421 12233333221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hhhHHHHHhcccC----CC
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED-----------YSLWVDLKAPLLA----AA 317 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~ 317 (1112)
.. . ...........+...-...+.+|+||+++... ......+...+.. ..
T Consensus 186 ~~--~-------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 186 SK--Y-------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc--c-------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 10 0 00011111122222223456899999995420 0111122222211 12
Q ss_pred CCcEEEEEcCChhhhh-h-c-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch-HHHHHHh
Q 047598 318 PNSKMIITTRHSHVAS-T-M-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP-LAAKSLG 393 (1112)
Q Consensus 318 ~gs~iivTTR~~~v~~-~-~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 393 (1112)
....||.||....... . . .-...+.+...+.++..+++...+......- .......|++.+.|.. -+|..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l----~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL----TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2345666665432211 1 1 1224678888999999999987764432211 1234567888888754 3554443
No 206
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.54 E-value=0.00013 Score=71.96 Aligned_cols=102 Identities=22% Similarity=0.145 Sum_probs=56.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAV 286 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 286 (1112)
.+.+.|+|++|+||||||+.+++..... ..+ .+++++ ..++...+.......... .....+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~---~g~-~~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~~~---- 98 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEK---KGI-RGYFFD------TKDLIFRLKHLMDEGKDT-----KFLKTV---- 98 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHH---SCC-CCCEEE------HHHHHHHHHHHHHHTCCS-----HHHHHH----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHH---cCC-eEEEEE------HHHHHHHHHHHhcCchHH-----HHHHHh----
Confidence 4689999999999999999998865311 111 122333 344444444443322111 222222
Q ss_pred CCCcEEEEEeCCCCCChhhHHH--HHhcccCC-CCCcEEEEEcCC
Q 047598 287 DGKRFLLVLDDVWNEDYSLWVD--LKAPLLAA-APNSKMIITTRH 328 (1112)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTTR~ 328 (1112)
. +.-+|||||++....+.|.. +...+... ..|..+|+||..
T Consensus 99 ~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 99 L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 45689999997433334432 22222211 246788888875
No 207
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.52 E-value=0.0013 Score=74.88 Aligned_cols=190 Identities=15% Similarity=0.106 Sum_probs=100.3
Q ss_pred cceecchhhHHHHHHHHhcC----CCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMVLST----DEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~----~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
..++|.+..++.+...+..+ ..-.......+-|.|+|++|+|||+||+.+++... . . -++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~---~-----~~~~v~~~~- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-N---S-----TFFSISSSD- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-S---S-----EEEEECCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-C---C-----CEEEEeHHH-
Confidence 56899999999988876310 00000112346788999999999999999998641 0 1 123332221
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-------h----hhHHHHHhcccC---CCCC
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED-------Y----SLWVDLKAPLLA---AAPN 319 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~----~~~~~l~~~l~~---~~~g 319 (1112)
+.... .+. .......+.. ..-..++.+|+||+++... . .....+...+.. ...+
T Consensus 204 ---l~~~~---~g~---~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 ---LVSKW---LGE---SEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred ---HHhhh---cch---HHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11100 010 1112222222 2223567899999997431 0 111223333322 2345
Q ss_pred cEEEEEcCChhhhhh--c-CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCC-chHHHHHHh
Q 047598 320 SKMIITTRHSHVAST--M-GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGG-LPLAAKSLG 393 (1112)
Q Consensus 320 s~iivTTR~~~v~~~--~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~ 393 (1112)
..||.||........ . .-...+.+...+.++-.++|..++........ ......|++.+.| .+-.|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 567777765532211 1 12246778888888888888887643221111 2234678888888 444454443
No 208
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=0.00066 Score=72.70 Aligned_cols=150 Identities=9% Similarity=0.011 Sum_probs=93.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC-CCCHHHHHHH
Q 047598 182 GRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD-VFDVLSISKA 260 (1112)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~ 260 (1112)
|-++.++.+...+.. + +.....++|+.|+||||+|+.+.+..... ...+.+. .++..+. ...+.+ .++
T Consensus 1 g~~~~~~~L~~~i~~------~--~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~-~~~~~d~-~~l~~~~~~~~id~-ir~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEK------S--EGISILINGEDLSYPREVSLELPEYVEKF-PPKASDV-LEIDPEGENIGIDD-IRT 69 (305)
T ss_dssp ---CHHHHHHHHHHT------C--SSEEEEEECSSSSHHHHHHHHHHHHHHTS-CCCTTTE-EEECCSSSCBCHHH-HHH
T ss_pred ChHHHHHHHHHHHHC------C--CCcEEEEECCCCCCHHHHHHHHHHhCchh-hccCCCE-EEEcCCcCCCCHHH-HHH
Confidence 345566677777754 2 25788899999999999999998742100 0012332 3444332 222222 233
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCCh-hhhhhcCCCc
Q 047598 261 LLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHS-HVASTMGPIK 339 (1112)
Q Consensus 261 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~ 339 (1112)
+++.+.... ..+++-++|+|+++.......+.+...+....+.+.+|++|.++ .+...+...
T Consensus 70 li~~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR- 132 (305)
T 2gno_A 70 IKDFLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR- 132 (305)
T ss_dssp HHHHHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-
T ss_pred HHHHHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-
Confidence 444433221 12457789999998777667777777776555677777776544 344444344
Q ss_pred eeeCCCCChHhHHHHHHHhH
Q 047598 340 HYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 340 ~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
.+++.++++++..+.+.+.+
T Consensus 133 ~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 133 VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SEEEECCCCHHHHHHHHHHH
T ss_pred eEeCCCCCHHHHHHHHHHHh
Confidence 89999999999999887765
No 209
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.48 E-value=6.8e-05 Score=75.72 Aligned_cols=100 Identities=26% Similarity=0.265 Sum_probs=53.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
+.+.|+|.+|+|||+||+.+++..... ...++|++++ .+...+...... .........+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-----~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~~~--- 115 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-----NVSSLIVYVP------ELFRELKHSLQD-----QTMNEKLDYIKK--- 115 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-----TCCEEEEEHH------HHHHHHHHC--------CCCHHHHHHHHH---
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEEhH------HHHHHHHHHhcc-----chHHHHHHHhcC---
Confidence 678899999999999999999875422 2345566543 344444333221 112333333322
Q ss_pred CCcEEEEEeCCCCCChhhHHH--HHh-cccCC-CCCcEEEEEcCC
Q 047598 288 GKRFLLVLDDVWNEDYSLWVD--LKA-PLLAA-APNSKMIITTRH 328 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTTR~ 328 (1112)
.-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 116 --~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 116 --VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp --SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 2389999996543333221 111 11111 235578888874
No 210
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.45 E-value=4.5e-05 Score=75.60 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=83.2
Q ss_pred hhccCCCcceeccccc-cCCcccccccccccccccccCCcccEEEeccccccc-----ccccccCCCcCcEEEccccccc
Q 047598 555 VFYQTENLRTFLPIRI-RGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGE-----LLVSFEDLKLLRYLNLADTMIR 628 (1112)
Q Consensus 555 ~~~~~~~lr~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----lp~~~~~l~~Lr~L~Ls~n~i~ 628 (1112)
.+...+.|+.|.+.++ .... .........+...+.|++|+|++|.++. +...+...+.|++|+|++|.|.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~----~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPV----PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCH----HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCH----HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 4456788888888765 3111 0112234456677899999999998853 4455667789999999999987
Q ss_pred c-----ccccccCCCCCcEEee--cCCCCCcc-----cCccccCCccccEEeecCCC
Q 047598 629 T-----LPESTNSLLNLEILIL--RNCSRLKK-----LPSKMRNLINLHHLDIKGAN 673 (1112)
Q Consensus 629 ~-----lp~~i~~L~~L~~L~L--~~~~~l~~-----lp~~i~~L~~L~~L~L~~~~ 673 (1112)
. +...+...++|++|+| ++| .++. +...+...++|++|+|++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4 5677888899999999 777 4543 44455667889999999887
No 211
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.40 E-value=0.00012 Score=68.87 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=61.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHH
Q 047598 179 AVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSIS 258 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 258 (1112)
.++|++..+.++.+.+.... ....-|.|+|.+|+|||++|+.+++... -++.+.-. ...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~------~~~~~vll~G~~GtGKt~lA~~i~~~~~-----------~~~~~~~~-~~~--- 63 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA------KRTSPVFLTGEAGSPFETVARYFHKNGT-----------PWVSPARV-EYL--- 63 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH------TCSSCEEEEEETTCCHHHHHGGGCCTTS-----------CEECCSST-THH---
T ss_pred CceeCCHHHHHHHHHHHHHh------CCCCcEEEECCCCccHHHHHHHHHHhCC-----------CeEEechh-hCC---
Confidence 57899998888888775311 1122477999999999999999987532 12222211 111
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCC-CCCcEEEEEcCC
Q 047598 259 KALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAA-APNSKMIITTRH 328 (1112)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTTR~ 328 (1112)
... ...+.... +.-.|+||++..........+...+... ..+.++|.||..
T Consensus 64 ~~~-----------------~~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 64 IDM-----------------PMELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp HHC-----------------HHHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred hHh-----------------hhhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 000 11111111 2347899999876654444555444332 345678888763
No 212
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.40 E-value=0.00034 Score=80.39 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=78.2
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCC-c-eeEEEEeCCCCCHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKF-D-IKAWVCISDVFDVL 255 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F-~-~~~wv~~~~~~~~~ 255 (1112)
..++||+.++++++..+.. ....-+.|+|.+|+|||++|+.+++........... + ..+.+.++
T Consensus 180 d~iiGr~~~i~~l~~~l~r--------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhc--------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------
Confidence 4599999999999999865 112245799999999999999998764211000000 1 11122222
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhhhh--
Q 047598 256 SISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHVAS-- 333 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~-- 333 (1112)
....+. .......+ +...-..++.+|++|. ..+....+...+ .. ..-++|.+|.......
T Consensus 246 -------~~~~g~--~e~~~~~~---~~~~~~~~~~iLfiD~----~~~a~~~L~~~L-~~-g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 -------TKYRGE--FEDRLKKV---MDEIRQAGNIILFIDA----AIDASNILKPSL-AR-GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTHHHH---HHHHHTCCCCEEEECC------------CCCT-TS-SSCEEEEECCTTTTHHHH
T ss_pred -------ccccch--HHHHHHHH---HHHHHhcCCeEEEEeC----chhHHHHHHHhh-cC-CCEEEEecCCHHHHHHHh
Confidence 000000 01122222 2222335678899991 111212222222 21 2346666665543111
Q ss_pred -----hcCCCceeeCCCCChHhHHHHHHHhH
Q 047598 334 -----TMGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 334 -----~~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
...-...+.+.+++.++..+++...+
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11122468999999999999998755
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.38 E-value=0.001 Score=76.32 Aligned_cols=187 Identities=15% Similarity=0.109 Sum_probs=100.1
Q ss_pred cceecchhhHHHHHHHHhcCC-CC----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTD-EK----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~-~~----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..++|.+..++++.+++...- .. ..+....+-|.|+|.+|+|||++|+.+++... ..| +.+.++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~-----~~f---v~vn~~--- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFF---FLINGP--- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS-----SEE---EEEEHH---
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC-----CCE---EEEEch---
Confidence 458999999999988774310 00 00012334588999999999999999987642 222 233321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC--------C---hhhHHHHHhcccC--CCCC
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNE--------D---YSLWVDLKAPLLA--AAPN 319 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~---~~~~~~l~~~l~~--~~~g 319 (1112)
++ ...+ ...........+.....+++.+|+||+++.. . ......+...+.. ...+
T Consensus 273 ---~l----~~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 273 ---EI----MSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp ---HH----HTSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred ---Hh----hhhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 11 1000 0111122233344444567889999999421 1 0111223333322 2234
Q ss_pred cEEEEEcCChhh-hhhc----CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCc-hHHHHHH
Q 047598 320 SKMIITTRHSHV-ASTM----GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGL-PLAAKSL 392 (1112)
Q Consensus 320 s~iivTTR~~~v-~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~ 392 (1112)
..||.||..... ...+ .-...+.+...+.++-.+++..++..... .....+ .++++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHHH
Confidence 566667765532 1111 22346889999999999999887643221 122222 4566666664 5444443
No 214
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.38 E-value=0.00028 Score=87.93 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=79.7
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCC--CceeEEEEeCCCCCHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFK--FDIKAWVCISDVFDVL 255 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~--F~~~~wv~~~~~~~~~ 255 (1112)
..++||+.++.+++..+.. ....-+.++|.+|+||||+|+.+++.......... -..++++.++....
T Consensus 170 d~viGr~~~i~~l~~~l~~--------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHC--------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------
T ss_pred cccCCcHHHHHHHHHHHhc--------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--
Confidence 4589999999999999865 12234689999999999999999876421100000 11233333322110
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-C-CCcEEEEEeCCCCCC--------hhhHHHHHhcccCCCCCcEEEEE
Q 047598 256 SISKALLESITRKPCHLNTLNEVQVDLKTAV-D-GKRFLLVLDDVWNED--------YSLWVDLKAPLLAAAPNSKMIIT 325 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivT 325 (1112)
... ...........+...+ . +++.+|++|++.... .+....+...+ .. .+-.+|.+
T Consensus 240 -----------g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~a 305 (854)
T 1qvr_A 240 -----------GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-HT-TCCCEEEE
T ss_pred -----------cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEe
Confidence 000 0112222222222222 2 468999999996432 11111122222 22 23445555
Q ss_pred cCChhh-----hhh-cCCCceeeCCCCChHhHHHHHHHh
Q 047598 326 TRHSHV-----AST-MGPIKHYNLKRLLDEDCWSIFIKH 358 (1112)
Q Consensus 326 TR~~~v-----~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 358 (1112)
|..... ... ..-...+.+.+++.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 543322 111 112245889999999999988643
No 215
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.29 E-value=0.00069 Score=73.65 Aligned_cols=138 Identities=15% Similarity=0.177 Sum_probs=73.1
Q ss_pred ceecchhhHHHHHHHHhcCCCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHH
Q 047598 179 AVYGRDKDKARILKMVLSTDEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSI 257 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 257 (1112)
.++|.+..++.+...+...... .........+.++|.+|+|||++|+.+++..... -...+.+.++...... .
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-----~~~~~~~~~~~~~~~~-~ 91 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-----EEAMIRIDMTEYMEKH-A 91 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-----GGGEEEEEGGGCCSTT-H
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-----CcceEEeecccccccc-c
Confidence 4678888888887777541100 0012234689999999999999999998864211 1123445544332211 1
Q ss_pred HHHHHHHhcCCCC--CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCC-----------CCcEEEE
Q 047598 258 SKALLESITRKPC--HLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAA-----------PNSKMII 324 (1112)
Q Consensus 258 ~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiv 324 (1112)
...+ ++.... ...........+. ....-+++||++..........+...+.... .++.+|.
T Consensus 92 ~~~l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ 165 (311)
T 4fcw_A 92 VSRL---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIM 165 (311)
T ss_dssp HHHH---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEE
T ss_pred HHHh---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEE
Confidence 1111 221111 0011112222222 1345799999998766555555555443211 2344777
Q ss_pred EcCC
Q 047598 325 TTRH 328 (1112)
Q Consensus 325 TTR~ 328 (1112)
||..
T Consensus 166 ttn~ 169 (311)
T 4fcw_A 166 TSNL 169 (311)
T ss_dssp EEST
T ss_pred eccc
Confidence 7765
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.27 E-value=0.00053 Score=72.49 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=34.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 179 AVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++|.+..+.++.+.+.... .....|.|+|.+|+|||++|+.+++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~------~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLA------PLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHT------TSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHh------CCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 47899999888887765411 112357799999999999999999864
No 217
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.21 E-value=0.00021 Score=67.49 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
...++|+|..|+|||||++.++....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998653
No 218
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.20 E-value=0.00065 Score=73.08 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=36.7
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..++|+...+.++.+.+.... ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a------~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA------PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC------STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHh------CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 357899999999888875421 122357799999999999999998854
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0042 Score=69.28 Aligned_cols=180 Identities=14% Similarity=0.134 Sum_probs=98.9
Q ss_pred cceecchhhHHHHHHHHhcC--CCC---CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLST--DEK---TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~--~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+.|.++.+++|.+.+.-+ ..+ ..+-...+=|-++|++|.|||+||+++++..... | +.+..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~---~~v~~s~l~ 252 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----F---IFSPASGIV 252 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----E---EEEEGGGTC
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----E---EEEehhhhc
Confidence 46789998888887765321 000 0012344668899999999999999999875422 2 334433222
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC----------h----hhHHHHHhcccC--C
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED----------Y----SLWVDLKAPLLA--A 316 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~ 316 (1112)
+. ........+...+...-...+++|++|+++... . .....+...+.. .
T Consensus 253 sk---------------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 253 DK---------------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp CS---------------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred cc---------------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 10 000111111222222334578999999997421 0 112223333322 2
Q ss_pred CCCcEEEEEcCChhhhhhc--C---CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCc
Q 047598 317 APNSKMIITTRHSHVASTM--G---PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGL 385 (1112)
Q Consensus 317 ~~gs~iivTTR~~~v~~~~--~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1112)
..+..||.||..++..... . -...+.+...+.++-.++|..+...... ..+..+ ..|++.+.|.
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~ 386 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGF 386 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCC
Confidence 2455788888766543321 1 2356788888888888888877643322 122222 5567777764
No 220
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.11 E-value=0.0043 Score=71.06 Aligned_cols=93 Identities=14% Similarity=0.041 Sum_probs=57.3
Q ss_pred EEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEc---------CC----h-----hhhhhcCCCceeeCCCCChHhHHH
Q 047598 292 LLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITT---------RH----S-----HVASTMGPIKHYNLKRLLDEDCWS 353 (1112)
Q Consensus 292 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT---------R~----~-----~v~~~~~~~~~~~l~~L~~~~~~~ 353 (1112)
++++|++.....+..+.+...+...... .+|+.| .+ + .+.+. ...+.+.+++.++..+
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR---~~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDR---VMIIRTMLYTPQEMKQ 373 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTT---EEEEECCCCCHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhh---cceeeCCCCCHHHHHH
Confidence 8999999877766777777666544333 344343 11 1 12222 2457999999999999
Q ss_pred HHHHhHhCCCCCCCchhHHHHHHHHHhhc-CCchHHHHHH
Q 047598 354 IFIKHAYESRSLKAHQISELFRKKVVGKC-GGLPLAAKSL 392 (1112)
Q Consensus 354 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c-~glPlai~~~ 392 (1112)
++...+-..... ..++....|++.+ +|.|-....+
T Consensus 374 iL~~~~~~~~~~----~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 374 IIKIRAQTEGIN----ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHTCC----BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHhCCC----CCHHHHHHHHHHccCCCHHHHHHH
Confidence 998776322211 1233456778888 7877654443
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.09 E-value=0.0031 Score=68.36 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=37.2
Q ss_pred cceecchhhHHHHHHHHhcC--CCCC----CCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 178 RAVYGRDKDKARILKMVLST--DEKT----DDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~--~~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..++|++..++.+...+... .... .......-+.|+|.+|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999988777430 0000 000123467799999999999999998764
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.08 E-value=0.0078 Score=63.03 Aligned_cols=186 Identities=14% Similarity=0.072 Sum_probs=93.5
Q ss_pred CcceecchhhHHHHHHHHh---cCCCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 177 ERAVYGRDKDKARILKMVL---STDEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~---~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
-..++|.+..++++.+.+. ....- ..+....+-+.|+|.+|+||||+|+.+++... ..| +.+..+.-.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~---~~i~~~~~~ 82 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPF---FTISGSDFV 82 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT-----CCE---EEECSCSST
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CCE---EEEeHHHHH
Confidence 3468899888777665432 21000 00011123478999999999999999987642 122 233322211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC----------h----hhHHHHHhcccC--C
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED----------Y----SLWVDLKAPLLA--A 316 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~ 316 (1112)
+. ............+.......+.++++|+++... . .....+...+.. .
T Consensus 83 ~~---------------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 83 EM---------------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp TS---------------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred HH---------------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 10 001112223333444445567899999984210 0 111222222221 1
Q ss_pred CCCcEEEEEcCChhhh-hhc-C---CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCC-chHHHH
Q 047598 317 APNSKMIITTRHSHVA-STM-G---PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGG-LPLAAK 390 (1112)
Q Consensus 317 ~~gs~iivTTR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~ 390 (1112)
..+..||.||...+.. ... . -...+.+...+.++-.+++....-... ..+... ...++..+.| .+--+.
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHH
Confidence 2345677777655422 111 1 234677888888888888876653221 111111 2446667777 554333
No 223
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0052 Score=67.30 Aligned_cols=180 Identities=18% Similarity=0.123 Sum_probs=98.5
Q ss_pred cceecchhhHHHHHHHHhcC--C-C--CCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLST--D-E--KTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~--~-~--~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+.|.++.+++|.+.+.-+ . + ...+-...+=|-++|++|.|||.||+++++..... | +.|..+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f---~~v~~s~l~ 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----F---IRVSGAELV 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----E---EEEEGGGGS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----c---eEEEhHHhh
Confidence 46889998888887755321 0 0 00012234557899999999999999999875422 2 334433222
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hh----hHHHHHhcccC--C
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED----------YS----LWVDLKAPLLA--A 316 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~----~~~~l~~~l~~--~ 316 (1112)
+. ........+...+...-...+++|++|+++... .. ....+...+.. .
T Consensus 220 sk---------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 220 QK---------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp CS---------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred cc---------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 10 000111111222222224568999999997421 00 11223333332 2
Q ss_pred CCCcEEEEEcCChhhhhh-----cCCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCc
Q 047598 317 APNSKMIITTRHSHVAST-----MGPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGL 385 (1112)
Q Consensus 317 ~~gs~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1112)
..+-.||.||..++.... ..-...+.+...+.++-.++|..+.-.... ..+..+ .+|++.+.|.
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvdl----~~lA~~t~G~ 353 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGINL----RKVAEKMNGC 353 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCCH----HHHHHHCCSC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHCCCC
Confidence 234456778876554321 123467889888888888999877643221 122223 5567777764
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.05 E-value=0.0011 Score=81.45 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=79.3
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++||+.+++++...+.. ....-+.++|.+|+|||++|+.+++...... +....++.+ +.++-.
T Consensus 180 d~iiG~~~~i~~l~~~l~~--------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~-~~~~~g----- 245 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV-MTLDMG----- 245 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE-ECC--------
T ss_pred CCccCchHHHHHHHHHHhC--------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE-EEeccc-----
Confidence 4699999999999999865 1122367999999999999999987641110 000011111 111110
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhhhhh--
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHVAST-- 334 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~-- 334 (1112)
....+ .-..... ..+......++.+|++|.. ........+... ....++|.||........
T Consensus 246 ------~~~~G--~~e~~l~---~~~~~~~~~~~~iLfiD~~-----~~~~~~L~~~l~-~~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 246 ------TKYRG--EFEDRLK---KVMDEIRQAGNIILFIDAA-----IDASNILKPSLA-RGELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp ---------------CTTHH---HHHHHHHTCCCCEEEECC-------------CCCTT-SSSCEEEEECCTTTTHHHHT
T ss_pred ------ccccc--hHHHHHH---HHHHHHHhcCCEEEEEcCc-----hhHHHHHHHHHh-cCCEEEEeCCChHHHHHHhh
Confidence 00000 0011222 2233333467889999921 112222222222 224566766665442110
Q ss_pred -----cCCCceeeCCCCChHhHHHHHHHhH
Q 047598 335 -----MGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 335 -----~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
..-...+.+...+.++..+++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0112468999999999999998654
No 225
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0058 Score=68.00 Aligned_cols=181 Identities=19% Similarity=0.157 Sum_probs=92.7
Q ss_pred CcceecchhhHHHHHHHHhcC--CCC---CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 177 ERAVYGRDKDKARILKMVLST--DEK---TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~--~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
-..+.|.++.+++|.+.+.-+ ..+ ..+-...+=|-++|++|.|||++|+++++..... | +.|+.+..
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~---~~v~~~~l 242 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----F---IRVNGSEF 242 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----E---EEEEGGGT
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----e---EEEecchh
Confidence 356889999988887765321 000 0012334567899999999999999999875422 2 33443332
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC----------Ch----hhHHHHHhcccC--
Q 047598 252 FDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNE----------DY----SLWVDLKAPLLA-- 315 (1112)
Q Consensus 252 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~----~~~~~l~~~l~~-- 315 (1112)
.+. ........+...+...-...+++|++|+++.. .. .....+...+..
T Consensus 243 ~~~---------------~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 243 VHK---------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp CCS---------------SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred hcc---------------ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 110 00111111222222233456899999998520 00 112223333322
Q ss_pred CCCCcEEEEEcCChhhhhh--cC---CCceeeCCCCCh-HhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCc
Q 047598 316 AAPNSKMIITTRHSHVAST--MG---PIKHYNLKRLLD-EDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGL 385 (1112)
Q Consensus 316 ~~~gs~iivTTR~~~v~~~--~~---~~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1112)
...+-.||.||...+.... .. -...+.+..+.+ ++-.++|..+.-... ......+ ..|++.+.|.
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~-l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS-LAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC-BCTTCCH----HHHHHHTTTC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC-CCcccCH----HHHHHHCCCC
Confidence 2345567778876543321 11 224567765654 444566666553322 1122223 4566666664
No 226
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.04 E-value=0.0044 Score=76.38 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=87.7
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEE-EeCCCCCHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWV-CISDVFDVL 255 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv-~~~~~~~~~ 255 (1112)
..++||+.++.++++.|.. ....-+.|+|.+|+|||++|+.+++...... ........+|. ..+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~--------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCR--------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------
T ss_pred CCccCCHHHHHHHHHHHhc--------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----
Confidence 4689999999999999865 1233567999999999999999987642110 00112223221 11110
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCC--------ChhhHHHHHhcccCCCCCcEEEEEc
Q 047598 256 SISKALLESITRKPCHLNTLNEVQVDLKTAV-DGKRFLLVLDDVWNE--------DYSLWVDLKAPLLAAAPNSKMIITT 326 (1112)
Q Consensus 256 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTT 326 (1112)
+... ......+.....+.+.+ ..++.+|++|++... .......+..++... .+..+|.+|
T Consensus 254 ---------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at 322 (758)
T 1r6b_X 254 ---------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGST 322 (758)
T ss_dssp ----------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEE
T ss_pred ---------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEe
Confidence 0000 11123333333333333 346789999999643 122222333333332 345666666
Q ss_pred CChhhhhhc-------CCCceeeCCCCChHhHHHHHHHhH
Q 047598 327 RHSHVASTM-------GPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 327 R~~~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
......... .....+.+.+.+.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 544321111 112368899999999888887644
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.95 E-value=0.0007 Score=83.31 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=88.3
Q ss_pred cceecchhhHHHHHHHHhcCCCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++|.+..++.+...+...... .........+.++|++|+|||++|+.+++... ..-...+.+.++.......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~-----~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF-----GDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH-----SCTTCEEEEEGGGGCSSCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc-----CCCcceEEEechhcccccc
Confidence 46899999998888887642111 00123345799999999999999999987642 1112234445443221100
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCC-----------CCCcEEEEE
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAA-----------APNSKMIIT 325 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivT 325 (1112)
.........++. ...-+|+||++..........+...+..+ ....+||+|
T Consensus 566 ----------------~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 566 ----------------TSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ----------------CC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ----------------cccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 000111112221 23348999999877766666655554331 135688888
Q ss_pred cCCh-----------------hhhhhcCCCceeeCCCCChHhHHHHHHHhH
Q 047598 326 TRHS-----------------HVASTMGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 326 TR~~-----------------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
|... .+...+ ...+.+.+++.++-.+++....
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRI--DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTS--SEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhC--CeEEecCCCCHHHHHHHHHHHH
Confidence 8731 111122 2478888999888877776543
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.91 E-value=0.0069 Score=68.70 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=96.3
Q ss_pred cceecchhhHHHHHHHHhcCCCC----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD 253 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~ 253 (1112)
..++|.++.++++.+........ ..+....+-|.|+|++|+|||+||+.+++.... .| +.++.+....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~-----~f---~~is~~~~~~ 87 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV-----PF---FHISGSDFVE 87 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC-----CE---EEEEGGGTTT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----Ce---eeCCHHHHHH
Confidence 46889998877776654320000 000111223779999999999999999986432 22 2333332211
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh--------------hhHHHHHhcccC--CC
Q 047598 254 VLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDY--------------SLWVDLKAPLLA--AA 317 (1112)
Q Consensus 254 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~ 317 (1112)
. . ...........+.......+.+|+||+++.... .....+...+.. ..
T Consensus 88 ~--------------~-~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 88 L--------------F-VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp C--------------C-TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred H--------------H-hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 0 000111222333444456789999999964211 112233322221 12
Q ss_pred CCcEEEEEcCChhhhhh--cC---CCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch
Q 047598 318 PNSKMIITTRHSHVAST--MG---PIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 318 ~gs~iivTTR~~~v~~~--~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1112)
.+..||.||...+.... .. -...+.+...+.++-.+++..++..... ..... ...|++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 35567777776654321 11 2237788888888888888776643221 11111 244777888865
No 229
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.013 Score=65.12 Aligned_cols=180 Identities=18% Similarity=0.104 Sum_probs=96.7
Q ss_pred cceecchhhHHHHHHHHhc----CCC-CCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLS----TDE-KTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~----~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+.|.++.+++|.+.+.- ++. ...+-...+=|-++|++|.|||.||+++++..... | +.+..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----f---i~vs~s~L~ 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----F---IRVIGSELV 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----E---EEEEGGGGC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----e---EEEEhHHhh
Confidence 3578899888888775421 000 00012345567799999999999999999875422 2 334433221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC--------h------hhHHHHHhcccCC--
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED--------Y------SLWVDLKAPLLAA-- 316 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~------~~~~~l~~~l~~~-- 316 (1112)
+ .. -......+...+...-...+++|++|+++... . .....+...+...
T Consensus 281 s--------------k~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 281 Q--------------KY-VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp C--------------CS-SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred c--------------cc-CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 1 00 00111112222222334568999999997421 0 0111222223222
Q ss_pred CCCcEEEEEcCChhhhhh--c---CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCc
Q 047598 317 APNSKMIITTRHSHVAST--M---GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGL 385 (1112)
Q Consensus 317 ~~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1112)
..+-.||.||...+.... . .-...+.+...+.++-.++|..+.-.... ..+-.+ ..|++.|.|.
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNS 414 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCC
Confidence 234456777765544321 1 23467888888888888999877643221 122222 4567777764
No 230
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0023 Score=71.21 Aligned_cols=179 Identities=14% Similarity=0.129 Sum_probs=95.8
Q ss_pred cceecchhhHHHHHHHHh----cCCC-CCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVL----STDE-KTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~----~~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+.|.++.+++|.+.+. .++. ...+-...+=|-++|++|.|||.||+++++..... | +.++.+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f---~~v~~s~l~ 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----F---LKLAAPQLV 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----E---EEEEGGGGC
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----E---EEEehhhhh
Confidence 568899999888877542 1100 00022345667899999999999999999875422 2 333433221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHH-HHHhCCCcEEEEEeCCCCC-------C---hhh----HHHHHhcccCC-
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDL-KTAVDGKRFLLVLDDVWNE-------D---YSL----WVDLKAPLLAA- 316 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~-------~---~~~----~~~l~~~l~~~- 316 (1112)
+ . ...........+ ...-...+++|++|+++.. . ... ...+...+...
T Consensus 253 ~--------------~--~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 253 Q--------------M--YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp S--------------S--CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred h--------------c--ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 1 0 001111111111 2222346899999998631 0 011 11233333322
Q ss_pred -CCCcEEEEEcCChhhhhhc-----CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCc
Q 047598 317 -APNSKMIITTRHSHVASTM-----GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGL 385 (1112)
Q Consensus 317 -~~gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1112)
..+-.||.||..++..... .-...+.+...+.++-.++|..+.-.... ..+-.+ .+|++.+.|.
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 2344566688766543321 12356888888888888888766543221 122222 4566777663
No 231
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.011 Score=64.79 Aligned_cols=179 Identities=17% Similarity=0.104 Sum_probs=95.7
Q ss_pred cceecchhhHHHHHHHHhcC---CCC--CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLST---DEK--TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~---~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+.|.++.+++|.+.+.-+ .+- ..+-...+=|-++|++|.|||.||+++++..... | +.++.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----f---i~v~~s~l~ 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----F---LRIVGSELI 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----E---EEEESGGGC
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----E---EEEEHHHhh
Confidence 46788998888887755320 000 0012334568899999999999999999875422 2 233332211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHH-HHHHhCCCcEEEEEeCCCCCC----------h----hhHHHHHhcccC--
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVD-LKTAVDGKRFLLVLDDVWNED----------Y----SLWVDLKAPLLA-- 315 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~~----------~----~~~~~l~~~l~~-- 315 (1112)
+ . ...+.+..... +...-...+++|++|+++... . .....+...+..
T Consensus 254 s--------------k--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 254 Q--------------K--YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp C--------------S--SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred h--------------c--cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 1 0 00111111222 222223568999999987411 0 112223322222
Q ss_pred CCCCcEEEEEcCChhhhhhc-----CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCc
Q 047598 316 AAPNSKMIITTRHSHVASTM-----GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGL 385 (1112)
Q Consensus 316 ~~~gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 385 (1112)
...+-.||.||...+..... .-...+.+...+.++-.++|..+.-.... ..+..+ ..|++.+.|.
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCCCH----HHHHHHCCSC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 22345677788766544321 12346788888888888888877643221 222223 4566666664
No 232
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.78 E-value=0.00069 Score=71.77 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=35.5
Q ss_pred cceecchhhHHHHHHHHhcCCCCC----CCCCCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKT----DDDANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
..++|.+..++.+.+.+....... .+....+-+.|+|.+|+|||++|+.+++...
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 468899888888777654100000 0001112367999999999999999998653
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.74 E-value=0.012 Score=62.67 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=23.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
...+.+.++|++|+|||+||+.+++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3446788999999999999999998763
No 234
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.70 E-value=0.04 Score=61.47 Aligned_cols=267 Identities=10% Similarity=0.072 Sum_probs=121.1
Q ss_pred cccccccccCCcccEEEeccccccccc-ccccCCCcCcEEEccccccccccccccCCCCCcEEeecCCCCCcccCccccC
Q 047598 582 IVLSDLLPKFKRLRVLSLQRYYIGELL-VSFEDLKLLRYLNLADTMIRTLPESTNSLLNLEILILRNCSRLKKLPSKMRN 660 (1112)
Q Consensus 582 ~~~~~~~~~~~~L~~L~L~~~~~~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 660 (1112)
.+...+|.+|.+|+.++|..+ +..+. .+|.++ +|..+.+..+ +..++.......+|+.+.+..+ +..+......
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp~~--~~~i~~~~F~ 133 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEFPGA--TTEIGNYIFY 133 (379)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTT
T ss_pred ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcccccCCCc--cccccccccc
Confidence 345566778888888888643 55555 346665 5666666543 5555544333346777777653 3334333222
Q ss_pred CccccEEeecCCCccccCCC-CCCCCCCCCccCeeeeccC-------------CcccCccccccccccCCeeEEecccCC
Q 047598 661 LINLHHLDIKGANLLREMPL-GMKELKNLRTLSNFIVGKG-------------EAISGLEDLKNLKFLGGELCISGLENV 726 (1112)
Q Consensus 661 L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~-------------~~~~~l~~l~~L~~L~~~l~i~~l~~~ 726 (1112)
-.+|+.+.+..+- ..+.. .+..+.+++.......... .....+.....+..+ . ..
T Consensus 134 ~~~l~~~~~~~~v--~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~ 202 (379)
T 4h09_A 134 NSSVKRIVIPKSV--TTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEF----T-----IP 202 (379)
T ss_dssp TCCCCEEEECTTC--CEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEE----E-----CC
T ss_pred cceeeeeecccee--eccccchhcccccccccccccccceeecccceecccccceecccccccccccc----c-----cc
Confidence 2345555444331 22221 2344444443322111100 000000001111100 0 00
Q ss_pred CChhhhhhccccCccccCceEEEeCCCCCCCchhhhhhHHHhhccCCCCCCCCceEEEeccCCCCCCCccCCCCCCceeE
Q 047598 727 NDSQKVREATLCEKENLKTLSLEWGSQFDNSQDEVMEEYAVGVLDKLQPHKCIKNLTIKQYNGARFPSWLGDPLFSKMEV 806 (1112)
Q Consensus 727 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~ 806 (1112)
..........+..+..|+.+.+..+-. ...-..+..+..|+.+.+... ...+...... .+.+|+.
T Consensus 203 ~~~~~i~~~~f~~~~~l~~i~~~~~~~-------------~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~-~~~~l~~ 267 (379)
T 4h09_A 203 STVKTVTAYGFSYGKNLKKITITSGVT-------------TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ-NCTALKT 267 (379)
T ss_dssp TTCCEECTTTTTTCSSCSEEECCTTCC-------------EECTTTTTTCSSCCEEEECTT-CCEECTTTTT-TCTTCCE
T ss_pred cceeEEeecccccccccceeeecccee-------------EEccccccCCccceEEEcCCC-ccEeCccccc-eeehhcc
Confidence 011111122334445555555422110 011122334555666666443 2223222221 2567777
Q ss_pred EEEcCcCCCCCCC--CCCCCCCcceEEecCCCCceecCccccCCCCcccCcccceeecCCCCcccccccccCCCCcCCcc
Q 047598 807 LKLENCWNCTSLP--SLGLLSSLRELTIQGLTKLKSIGSEVYGKGFSKPFQSLEILSFENLPEWEYWDTNIKGNDHADRV 884 (1112)
Q Consensus 807 L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 884 (1112)
+.+..+ ...++ .+..+++|+.+.+.+ ..++.++...+.. +.+|+.+.+.. .++.+. ...+
T Consensus 268 i~l~~~--i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~-----c~~L~~i~lp~--~l~~I~--------~~aF 329 (379)
T 4h09_A 268 LNFYAK--VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMD-----CVKLSSVTLPT--ALKTIQ--------VYAF 329 (379)
T ss_dssp EEECCC--CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTT-----CTTCCEEECCT--TCCEEC--------TTTT
T ss_pred cccccc--ceeccccccccccccccccccc-cccceehhhhhcC-----CCCCCEEEcCc--cccEEH--------HHHh
Confidence 777543 22222 567778888888865 3455665544332 67777777743 122221 2234
Q ss_pred cCCCccceEeEec
Q 047598 885 EIFPRLHKLSIME 897 (1112)
Q Consensus 885 ~~~p~L~~L~l~~ 897 (1112)
..+++|+.+.+..
T Consensus 330 ~~C~~L~~i~ip~ 342 (379)
T 4h09_A 330 KNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCCCCCCT
T ss_pred hCCCCCCEEEECC
Confidence 5677777777754
No 235
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.41 E-value=0.0072 Score=66.12 Aligned_cols=151 Identities=12% Similarity=0.119 Sum_probs=82.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHH
Q 047598 179 AVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSIS 258 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 258 (1112)
.++|++..++.+...+.. + .-+.++|.+|+|||+||+.+.+... ..| ..+.+.......++.
T Consensus 28 ~i~g~~~~~~~l~~~l~~------~----~~vll~G~pGtGKT~la~~la~~~~-----~~~---~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICT------G----GHILLEGVPGLAKTLSVNTLAKTMD-----LDF---HRIQFTPDLLPSDLI 89 (331)
T ss_dssp TCCSCHHHHHHHHHHHHH------T----CCEEEESCCCHHHHHHHHHHHHHTT-----CCE---EEEECCTTCCHHHHH
T ss_pred ceeCcHHHHHHHHHHHHc------C----CeEEEECCCCCcHHHHHHHHHHHhC-----CCe---EEEecCCCCChhhcC
Confidence 578999999988888765 1 2578999999999999999987542 222 223333222222221
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCC--CcEEEEEeCCCCCChhhHHHHHhcccC-----------CCCCcEEEEE
Q 047598 259 KALLESITRKPCHLNTLNEVQVDLKTAVDG--KRFLLVLDDVWNEDYSLWVDLKAPLLA-----------AAPNSKMIIT 325 (1112)
Q Consensus 259 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~iivT 325 (1112)
......... ... ..-.+ ...++++|++..........+...+.. ......|+.|
T Consensus 90 ----g~~~~~~~~-~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat 156 (331)
T 2r44_A 90 ----GTMIYNQHK-GNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLAT 156 (331)
T ss_dssp ----EEEEEETTT-TEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEE
T ss_pred ----CceeecCCC-Cce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEe
Confidence 110000000 000 00000 125899999987665444444433321 1234455555
Q ss_pred cCChh------hhhh-cCC-CceeeCCCCChHhHHHHHHHhHh
Q 047598 326 TRHSH------VAST-MGP-IKHYNLKRLLDEDCWSIFIKHAY 360 (1112)
Q Consensus 326 TR~~~------v~~~-~~~-~~~~~l~~L~~~~~~~Lf~~~~~ 360 (1112)
+.... +... ..- ...+.+.+++.++-.+++...+.
T Consensus 157 ~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 157 QNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp ECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 55221 1111 111 12478888899888888887764
No 236
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.37 E-value=0.015 Score=59.20 Aligned_cols=85 Identities=22% Similarity=0.145 Sum_probs=52.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcC-----------CC-CCCCC
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITR-----------KP-CHLNT 274 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~-----------~~-~~~~~ 274 (1112)
-.++.|+|.+|+||||||..+.. . . -..++|++....++...+.+ +.+..+. .. .....
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~--~-----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L--S-----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKE 90 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H--H-----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H--c-----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHH
Confidence 35899999999999999999987 1 1 13577888776555554433 3332221 11 11122
Q ss_pred hHHHHHHHHHHhCCCcEEEEEeCCCC
Q 047598 275 LNEVQVDLKTAVDGKRFLLVLDDVWN 300 (1112)
Q Consensus 275 ~~~~~~~l~~~l~~kr~LlVlDdv~~ 300 (1112)
..+....++..+..+.-+||+|.+-.
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 23344455555544577999998754
No 237
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.30 E-value=0.0093 Score=73.43 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=38.5
Q ss_pred cceecchhhHHHHHHHHhcCCCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..++|.+..++.+...+...... .........+.++|.+|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 35889999888887776531100 0012345678999999999999999998754
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.29 E-value=0.0022 Score=67.58 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=44.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEe--CCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCI--SDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKT 284 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 284 (1112)
.+++.|+|++|+||||||.++... . ...++|+++ .+..+. . ..+.+.....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~-----G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---L-----GGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---H-----HTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---C-----CCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHH
Confidence 357789999999999999999875 1 112345665 332111 0 0345555556666
Q ss_pred HhCCCcEEEEEeCCCC
Q 047598 285 AVDGKRFLLVLDDVWN 300 (1112)
Q Consensus 285 ~l~~kr~LlVlDdv~~ 300 (1112)
.+...+ +||+|++..
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 665556 999999953
No 239
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.23 E-value=0.052 Score=65.35 Aligned_cols=181 Identities=15% Similarity=0.118 Sum_probs=97.8
Q ss_pred cceecchhhHHHHHHHHh----cCCC-CCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVL----STDE-KTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~----~~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+.|.++.+++|.+++. .++. ...+-...+=|.++|++|.|||+||+++++.... +| +.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-----~~---~~v~~~~-- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FF---FLINGPE-- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-----EE---EEEEHHH--
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----eE---EEEEhHH--
Confidence 457888888888877653 2110 0012234567889999999999999999987542 22 3333221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-------hh----hHHHHHhcccCC--CCC
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED-------YS----LWVDLKAPLLAA--APN 319 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~----~~~~l~~~l~~~--~~g 319 (1112)
+ . +.. .......+...+.......+.+|++|+++... .. ....+...+... ..+
T Consensus 274 ----l----~---sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 274 ----I----M---SKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp ----H----H---SSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred ----h----h---ccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 1 1 000 11112223333444445678999999997421 01 111222222211 123
Q ss_pred cEEEEEcCChhhhh-hc----CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch
Q 047598 320 SKMIITTRHSHVAS-TM----GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 320 s~iivTTR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1112)
-.||.||...+... .+ .-...+.+...+.++-.++|..+...... ..+.. ..+|++++.|.-
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCC
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCC
Confidence 45666776554322 11 12356888888888888888876532211 12222 255777777653
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.16 E-value=0.01 Score=69.29 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=78.7
Q ss_pred CcceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
...++|.+..+..+.+.+.-..-. ......++.++|++|+||||||+.++..... .| ..+.++...+...
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~--~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~-----~~---~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLT--KSLKGPILCLAGPPGVGKTSLAKSIAKSLGR-----KF---VRISLGGVRDESE 149 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHS--SSCCSCEEEEESSSSSSHHHHHHHHHHHHTC-----EE---EEECCCC------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhc--ccCCCCEEEEECCCCCCHHHHHHHHHHhcCC-----Ce---EEEEecccchhhh
Confidence 345888888777775544210000 1123558999999999999999999876431 12 1222332222111
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChh----hHHHHHhcccCCC---------------
Q 047598 257 ISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYS----LWVDLKAPLLAAA--------------- 317 (1112)
Q Consensus 257 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~--------------- 317 (1112)
+.......++. ........+.. .....-+++||++...... ....+...+....
T Consensus 150 ~~g~~~~~ig~------~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 150 IRGHRRTYVGA------MPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp --------------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhhHHHHHhcc------CchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 11110000110 00111112222 2223448889999764322 1122333221110
Q ss_pred CCcEEEEEcCChhh-----hhhcCCCceeeCCCCChHhHHHHHHHhH
Q 047598 318 PNSKMIITTRHSHV-----ASTMGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 318 ~gs~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
....+|.||..... ..++ ..+.+.+++.++-.+++..+.
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred cceEEEeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 23466667665432 2222 467889999888888877654
No 241
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.15 E-value=0.013 Score=72.97 Aligned_cols=139 Identities=15% Similarity=0.195 Sum_probs=72.6
Q ss_pred cceecchhhHHHHHHHHhcCCCC-CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHH
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLS 256 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 256 (1112)
..++|.+..+..+...+...... .+.......+.|+|..|+|||++|+.+.+...-. -...+.+.++.......
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~-----~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-----EEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS-----GGGEEEECTTTCCSSGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-----CCcEEEEechhccchhH
Confidence 35799999988888877541100 0012334688999999999999999998764211 11223344443222100
Q ss_pred HHHHHHHHhcCCCC--CCCChHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCC-----------CCcEEE
Q 047598 257 ISKALLESITRKPC--HLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAA-----------PNSKMI 323 (1112)
Q Consensus 257 ~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ii 323 (1112)
...+ ++.... .......+...++. ...-+|+||++...+......+...+..+. .+..||
T Consensus 633 -~s~l---~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI 705 (854)
T 1qvr_A 633 -VSRL---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVII 705 (854)
T ss_dssp -GGGC-----------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEE
T ss_pred -HHHH---cCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEE
Confidence 0000 000000 00000112222222 234689999998777666666665554321 244577
Q ss_pred EEcCC
Q 047598 324 ITTRH 328 (1112)
Q Consensus 324 vTTR~ 328 (1112)
+||..
T Consensus 706 ~tsn~ 710 (854)
T 1qvr_A 706 LTSNL 710 (854)
T ss_dssp EECCT
T ss_pred EecCc
Confidence 77764
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.14 E-value=0.048 Score=57.31 Aligned_cols=126 Identities=14% Similarity=0.104 Sum_probs=68.7
Q ss_pred EEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH-hCC
Q 047598 210 IPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA-VDG 288 (1112)
Q Consensus 210 v~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~ 288 (1112)
+.|+|++|+||||||+.++..... ..+++......+.. ..........+.+. -..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~--------~~i~i~g~~l~~~~----------------~~~~~~~i~~vf~~a~~~ 102 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL--------NFISVKGPELLNMY----------------VGESERAVRQVFQRAKNS 102 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC--------EEEEEETTTTCSST----------------THHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC--------CEEEEEcHHHHhhh----------------hhHHHHHHHHHHHHHHhc
Confidence 899999999999999999986421 23344432221100 00001111122221 134
Q ss_pred CcEEEEEeCCCCCCh-----------hhHHHHHhcccCCC--CCcEEEEEcCChhhhhhc-----CCCceeeCCCCChHh
Q 047598 289 KRFLLVLDDVWNEDY-----------SLWVDLKAPLLAAA--PNSKMIITTRHSHVASTM-----GPIKHYNLKRLLDED 350 (1112)
Q Consensus 289 kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~~--~gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~ 350 (1112)
.+.++++|+++.... .....+...+..+. ...-++.+|..+++.... .-...+.+...+.++
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~ 182 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182 (274)
T ss_dssp CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence 578999999964210 11122222232221 234566677776654321 234567888888888
Q ss_pred HHHHHHHhH
Q 047598 351 CWSIFIKHA 359 (1112)
Q Consensus 351 ~~~Lf~~~~ 359 (1112)
-.++|....
T Consensus 183 r~~il~~~~ 191 (274)
T 2x8a_A 183 RLAILKTIT 191 (274)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888888765
No 243
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.08 E-value=0.0023 Score=68.84 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
...+.|+|.+|+|||+||..+++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999998653
No 244
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.05 E-value=0.035 Score=57.80 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=78.4
Q ss_pred cceecchhhHHHHHHHHhcCCCC-----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..++|.+..+.++.+........ ..-.-... +.|+|.+|+||||||+.++..... . .+.+..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~~~~-----~---~i~~~~---- 82 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEARV-----P---FITASG---- 82 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHHTTC-----C---EEEEEH----
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHHhCC-----C---EEEeeH----
Confidence 46888887766665443210000 00011122 899999999999999999986431 1 122221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-CCCcEEEEEeCCCCC----------ChhhH----HHHHhcccCCC
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAV-DGKRFLLVLDDVWNE----------DYSLW----VDLKAPLLAAA 317 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~~~~----~~l~~~l~~~~ 317 (1112)
.++ .... ..........+.+.. .....++++|++... ....+ ..+...+..+.
T Consensus 83 --~~~----~~~~------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 83 --SDF----VEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp --HHH----HHSC------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred --HHH----HHHH------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 111 1100 001111122222222 345689999999421 00111 12222232222
Q ss_pred C--CcEEEEEcCChhhhhhc-----CCCceeeCCCCChHhHHHHHHHhH
Q 047598 318 P--NSKMIITTRHSHVASTM-----GPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 318 ~--gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
. ..-++.||..+.+.... .-...+.+...+.++-.+++...+
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 2 23455566666543221 233567888888888888887665
No 245
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.97 E-value=0.075 Score=60.63 Aligned_cols=177 Identities=14% Similarity=0.110 Sum_probs=91.7
Q ss_pred CcceecchhhHHHHHHHHhcC--CC---CCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 177 ERAVYGRDKDKARILKMVLST--DE---KTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~--~~---~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
-..++|.+..+.++.+..... .. .....-... +.|+|.+|+||||||+.++..... . .+.++.+.-
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~G-vLL~GppGtGKTtLaraIa~~~~~-----~---~i~i~g~~~ 100 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEARV-----P---FITASGSDF 100 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSE-EEEECSSSSSHHHHHHHHHHHTTC-----C---EEEEEGGGG
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCce-EEEECCCCCCHHHHHHHHHHHhCC-----C---EEEEehhHH
Confidence 346889988777766554210 00 000011122 889999999999999999986431 1 233333221
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC----CCcEEEEEeCCCCCC----------hhhH----HHHHhcc
Q 047598 252 FDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD----GKRFLLVLDDVWNED----------YSLW----VDLKAPL 313 (1112)
Q Consensus 252 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdv~~~~----------~~~~----~~l~~~l 313 (1112)
... ........++..++ ..+.++++|++.... ...+ ..+...+
T Consensus 101 ~~~-------------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 101 VEM-------------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp TSS-------------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred HHh-------------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh
Confidence 110 00111122333332 235799999995321 1122 2233333
Q ss_pred cCCC--CCcEEEEEcCChhhhhh--c---CCCceeeCCCCChHhHHHHHHHhHhCCCCCCCchhHHHHHHHHHhhcCCch
Q 047598 314 LAAA--PNSKMIITTRHSHVAST--M---GPIKHYNLKRLLDEDCWSIFIKHAYESRSLKAHQISELFRKKVVGKCGGLP 386 (1112)
Q Consensus 314 ~~~~--~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 386 (1112)
.... .+..|+.||..+++... . .....+.+...+.++-.+++..++-... ..++.. ...|++.+.|..
T Consensus 162 dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSST----THHHHTTSCSCC
T ss_pred cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHH----HHHHHHhcCCCC
Confidence 3222 33456667776655321 1 1235788888888888888877653221 111111 245677777654
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.90 E-value=0.045 Score=57.90 Aligned_cols=159 Identities=16% Similarity=0.094 Sum_probs=79.7
Q ss_pred CcceecchhhHHHHHHHHhcCCCC-----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 177 ERAVYGRDKDKARILKMVLSTDEK-----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
-..++|.+..+.++.+........ ..-.-... +.|+|.+|+||||||+.++..... . .+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~~~-----~---~i~~~~~-- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEARV-----P---FITASGS-- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHTTC-----C---EEEEEHH--
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHcCC-----C---EEEecHH--
Confidence 356889887776665543220000 00001122 889999999999999999986531 1 2222211
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCC----------ChhhHH----HHHhcccCCC
Q 047598 252 FDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNE----------DYSLWV----DLKAPLLAAA 317 (1112)
Q Consensus 252 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~----~l~~~l~~~~ 317 (1112)
.+ ..... ..........++..-.....++++|++... ....+. .+...+..+.
T Consensus 108 ----~~----~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 108 ----DF----VEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp ----HH----HHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred ----HH----HHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 11 11000 000111112222222345689999999421 001122 2222222222
Q ss_pred C--CcEEEEEcCChhhhhh-----cCCCceeeCCCCChHhHHHHHHHhH
Q 047598 318 P--NSKMIITTRHSHVAST-----MGPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 318 ~--gs~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
. ...++.||..+.+... ..-...+.+...+.++-.+++..++
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 2 2345556666554321 1234578888888888888887665
No 247
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.83 E-value=0.05 Score=60.47 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+.++|++|+|||++|+.+++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999865
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.53 E-value=0.08 Score=51.31 Aligned_cols=19 Identities=47% Similarity=0.758 Sum_probs=18.4
Q ss_pred EEEEEccCCCcHHHHHHHH
Q 047598 209 VIPIVGMAGVGKTTLAREV 227 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v 227 (1112)
+|+|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.34 E-value=0.012 Score=59.22 Aligned_cols=113 Identities=11% Similarity=-0.107 Sum_probs=63.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC--CCCChHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPC--HLNTLNEVQVDLKT 284 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~ 284 (1112)
-.++.|+|..|+||||++..+..+.... -..++.+...... . ....+++.++.... ......+....+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~-----g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA-----DVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-----TCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc-----CCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 4689999999999999998887765422 1223333322211 1 11233333432211 12234455555665
Q ss_pred HhCCCcE-EEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChh
Q 047598 285 AVDGKRF-LLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSH 330 (1112)
Q Consensus 285 ~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 330 (1112)
.+.+.++ +||+|.+..-..+..+.+ ..+.+ .|-.||+|-+..+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecccc
Confidence 5554445 999999965443333333 23333 2678999998644
No 250
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.28 E-value=0.03 Score=60.74 Aligned_cols=85 Identities=20% Similarity=0.192 Sum_probs=55.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHH
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPC-----HLNTLNEVQV 280 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~ 280 (1112)
.-+++.|+|.+|+||||||.++....... -..++|++....++.. .++.++.... ...+.++...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~-----gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~ 129 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM-----GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALE 129 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHH
Confidence 45799999999999999999988764322 2357788887777654 4455544321 2344555555
Q ss_pred HHHHHhC-CCcEEEEEeCCCC
Q 047598 281 DLKTAVD-GKRFLLVLDDVWN 300 (1112)
Q Consensus 281 ~l~~~l~-~kr~LlVlDdv~~ 300 (1112)
.+...++ .+.-++|+|.+-.
T Consensus 130 ~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 130 IVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHHHTSCCSEEEEECTTT
T ss_pred HHHHHhhhcCCCeEEehHhhh
Confidence 5554443 4556899998743
No 251
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.26 E-value=0.019 Score=52.34 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=38.0
Q ss_pred EEEecccccc--cccccccCCCcCcEEEcccccccccccc-ccCCCCCcEEeecCCC
Q 047598 596 VLSLQRYYIG--ELLVSFEDLKLLRYLNLADTMIRTLPES-TNSLLNLEILILRNCS 649 (1112)
Q Consensus 596 ~L~L~~~~~~--~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~ 649 (1112)
+++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. |..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 6777777777 7776543 3678888888888888765 5677778888887773
No 252
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.21 E-value=0.09 Score=64.43 Aligned_cols=160 Identities=18% Similarity=0.119 Sum_probs=84.4
Q ss_pred cceecchhhHHHHHHHHhcC---CC--CCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLST---DE--KTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~---~~--~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..++|.+..++++.+++..+ .+ ..-.-....-|.|+|.+|+||||||+.++.... ..| +.+..+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~-----~~~---i~v~~~~-- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFF---FLINGPE-- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT-----CEE---EEEEHHH--
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CcE---EEEEchH--
Confidence 56899999999988877420 00 000112345689999999999999999987642 122 2333211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCC-------h----hhHHHHHhcccCC--CCC
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNED-------Y----SLWVDLKAPLLAA--APN 319 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~----~~~~~l~~~l~~~--~~g 319 (1112)
+.... ...........+.........++++|++.... . .....+...+... ..+
T Consensus 274 ------------l~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 274 ------------IMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp ------------HSSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred ------------hhhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 00000 00111122223333334467899999995321 0 0111222222211 134
Q ss_pred cEEEEEcCChhhhh-hc----CCCceeeCCCCChHhHHHHHHHhHh
Q 047598 320 SKMIITTRHSHVAS-TM----GPIKHYNLKRLLDEDCWSIFIKHAY 360 (1112)
Q Consensus 320 s~iivTTR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~ 360 (1112)
..+|.||....... .+ .-...+.+...+.++-.+++...+-
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 45666666543221 11 1124567888888888888877653
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.16 E-value=0.1 Score=56.80 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=41.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLSISKALLESIT 266 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 266 (1112)
..-.++.|+|.+|+||||||..++....... .++.-..++|++....++...+. +++..++
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3457999999999999999999887532210 00123478899998887766554 3444444
No 254
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.05 E-value=0.059 Score=56.54 Aligned_cols=84 Identities=11% Similarity=0.120 Sum_probs=54.7
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCChHHH-HHHH
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPC-----HLNTLNEV-QVDL 282 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~-~~~l 282 (1112)
++-|.|.+|+||||||.++....... ..-..++|++....++.. .+++++.... ...+.++. ...+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~---g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ---YPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH---CTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc---CCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 78999999999999998887654321 112468899988888753 3666665432 12344444 3322
Q ss_pred HHH---hCCCcEEEEEeCCCC
Q 047598 283 KTA---VDGKRFLLVLDDVWN 300 (1112)
Q Consensus 283 ~~~---l~~kr~LlVlDdv~~ 300 (1112)
... -+++.-+||+|-|-.
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHhhccCceEEEEecccc
Confidence 222 245678999999853
No 255
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.92 E-value=0.053 Score=55.98 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=37.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLSISKALLESIT 266 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 266 (1112)
-.++.|+|.+|+|||||+..+........ .+..-..++|+.....+....+ ..+++.++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g 83 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYG 83 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcC
Confidence 35999999999999999999887432210 0011346788887776555443 33444444
No 256
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.85 E-value=0.016 Score=56.41 Aligned_cols=113 Identities=20% Similarity=0.079 Sum_probs=58.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC---CCHHHHHHHHHHHhcC------C-C-CCCC---
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV---FDVLSISKALLESITR------K-P-CHLN--- 273 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~il~~l~~------~-~-~~~~--- 273 (1112)
..|.|++..|.||||.|-...-+.. ++-..+.++.+-.. .....+ ++.+.. . . ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~-----g~G~rV~~vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV-----GHGKNVGVVQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH-----HTTCCEEEEESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcH
Confidence 3566666677999999966554432 22223444443332 122223 333310 0 0 0010
Q ss_pred ----ChHHHHHHHHHHhCCCcE-EEEEeCCCC---CChhhHHHHHhcccCCCCCcEEEEEcCCh
Q 047598 274 ----TLNEVQVDLKTAVDGKRF-LLVLDDVWN---EDYSLWVDLKAPLLAAAPNSKMIITTRHS 329 (1112)
Q Consensus 274 ----~~~~~~~~l~~~l~~kr~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 329 (1112)
.........++.+.+.+| |||||++-. -.....+++...+........||+|+|..
T Consensus 100 ~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 100 ADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 112223345566655555 999999832 12233445555555555677899999986
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.79 E-value=0.062 Score=58.73 Aligned_cols=83 Identities=18% Similarity=0.125 Sum_probs=55.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPC-----HLNTLNEVQVD 281 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~ 281 (1112)
-+++.|.|.+|+||||||.++....... -..++|++....++.. .++.++.... ...+.++....
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~-----g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~ 143 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA-----GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEI 143 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC-----CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHH
Confidence 3588899999999999998887654322 2368899998877654 2344443211 22355666666
Q ss_pred HHHHhCC-CcEEEEEeCCC
Q 047598 282 LKTAVDG-KRFLLVLDDVW 299 (1112)
Q Consensus 282 l~~~l~~-kr~LlVlDdv~ 299 (1112)
+....+. +.-+||+|.+-
T Consensus 144 l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHHTTTCCSEEEEECTT
T ss_pred HHHHHhcCCCCEEEEeChH
Confidence 6655543 44589999884
No 258
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.66 E-value=0.34 Score=52.89 Aligned_cols=156 Identities=10% Similarity=-0.048 Sum_probs=95.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH-H
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKT-A 285 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~ 285 (1112)
..+..++|..|.||++.|+.+.+.... ..|+....+.+....++ .++...+.. -
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~---------------------~~l~~~~~~~p 72 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAA----QGFEEHHTFSIDPNTDW---------------------NAIFSLCQAMS 72 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHH----HTCCEEEEEECCTTCCH---------------------HHHHHHHHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHh----CCCCeeEEEEecCCCCH---------------------HHHHHHhcCcC
Confidence 358889999999999999888765321 12322111223322333 333322221 2
Q ss_pred hCCCcEEEEEeCCCC-CChhhHHHHHhcccCCCCCcEEEEEcCC-------hhhhhhc-CCCceeeCCCCChHhHHHHHH
Q 047598 286 VDGKRFLLVLDDVWN-EDYSLWVDLKAPLLAAAPNSKMIITTRH-------SHVASTM-GPIKHYNLKRLLDEDCWSIFI 356 (1112)
Q Consensus 286 l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTTR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~ 356 (1112)
+-+++-++|+|++.. .....++.+...+....+++.+|++|.. ..+...+ .....++..+++.++....+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 345677889999866 4446677777777655567777776643 1233332 234678899999998888777
Q ss_pred HhHhCCCCCCCchhHHHHHHHHHhhcCCchHHHHH
Q 047598 357 KHAYESRSLKAHQISELFRKKVVGKCGGLPLAAKS 391 (1112)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 391 (1112)
+.+-..+. ....+.+..+++.++|...++..
T Consensus 153 ~~~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLNL----ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTTC----EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcCC----CCCHHHHHHHHHHhchHHHHHHH
Confidence 76643322 11234577899999998876654
No 259
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.65 E-value=0.05 Score=55.73 Aligned_cols=114 Identities=18% Similarity=0.060 Sum_probs=60.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPC----------------- 270 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----------------- 270 (1112)
.+++|+|.+|+|||||++.+....... -..++|+.... ....+...+ ..++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~-----~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD-----GDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH-----TCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC---
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC-----CCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEecccccc
Confidence 589999999999999999988554211 12455666543 333333332 23322110
Q ss_pred ------CCCChHHHHHHHHHHh---CCCcEEEEEeCCCCC---ChhhHHHHHhcccC--CCCCcEEEEEcCCh
Q 047598 271 ------HLNTLNEVQVDLKTAV---DGKRFLLVLDDVWNE---DYSLWVDLKAPLLA--AAPNSKMIITTRHS 329 (1112)
Q Consensus 271 ------~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTTR~~ 329 (1112)
...+..+....+.+.+ .-++.+||+|..-.. +......+...+.. ...|..||++|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0113445444444433 233459999998521 22223333333322 12477888888765
No 260
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.61 E-value=0.081 Score=57.23 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=40.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLSISKALLESITR 267 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 267 (1112)
-.++.|+|.+|+||||||.+++....... .++.-..++|++....++...+. ++++.++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~ 167 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGL 167 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCC
Confidence 45899999999999999999876532110 00112478999998887766554 34455543
No 261
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.61 E-value=0.059 Score=58.35 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=41.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccc---------cCC-CC-ceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNA---------KDF-KF-DIKAWVCISDVFDVLSISKALLESITR 267 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~~~-~F-~~~~wv~~~~~~~~~~~~~~il~~l~~ 267 (1112)
.-.++.|+|.+|+||||+|.+++....... ..+ .- ..++|++....++...+.+ +++.++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 457999999999999999998876532110 001 11 5789999988877766553 3455543
No 262
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.57 E-value=0.034 Score=55.43 Aligned_cols=43 Identities=28% Similarity=0.308 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 183 RDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
|+..++.+.+.+... ......+|+|+|..|+||||+++.+...
T Consensus 3 ~~~~~~~l~~~~~~~-----~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAI-----KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTS-----CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 556677788877652 1234579999999999999999998764
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.36 E-value=0.029 Score=56.32 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=23.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
....+|+|+|..|+|||||++.+..-.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999987654
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.34 E-value=0.075 Score=56.34 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=44.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISD-VFDVLSISKALLESITRKPCHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 285 (1112)
.++++|+|.+|+||||++..+....... .. ..+..+.... .....+.+....+..+.......+...+...+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~- 179 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL- 179 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-
Confidence 4699999999999999999887654321 11 2344454432 1223333333333333222112233344334443
Q ss_pred hCCCcEEEEEeC
Q 047598 286 VDGKRFLLVLDD 297 (1112)
Q Consensus 286 l~~kr~LlVlDd 297 (1112)
+ .+.=++|+|-
T Consensus 180 ~-~~~dlvIiDT 190 (296)
T 2px0_A 180 F-SEYDHVFVDT 190 (296)
T ss_dssp G-GGSSEEEEEC
T ss_pred h-cCCCEEEEeC
Confidence 3 3345788883
No 265
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.07 E-value=0.094 Score=57.06 Aligned_cols=84 Identities=23% Similarity=0.177 Sum_probs=54.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPC-----HLNTLNEVQVD 281 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~ 281 (1112)
-+++.|+|.+|+||||||.++....... -..++|++....++.. .++.++.... ...+.++....
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~-----g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~ 130 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA-----GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEI 130 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 4589999999999999999987654321 2357899988777653 2444443221 22345555555
Q ss_pred HHHHhC-CCcEEEEEeCCCC
Q 047598 282 LKTAVD-GKRFLLVLDDVWN 300 (1112)
Q Consensus 282 l~~~l~-~kr~LlVlDdv~~ 300 (1112)
+....+ .+.-+||+|.+-.
T Consensus 131 ~~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 131 ADMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHHTTTCCSEEEEECGGG
T ss_pred HHHHHhcCCCCEEEEcChHh
Confidence 554443 3456899998854
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.82 E-value=0.029 Score=54.69 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|.|+|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998764
No 267
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.70 E-value=0.11 Score=56.54 Aligned_cols=83 Identities=19% Similarity=0.156 Sum_probs=52.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPC-----HLNTLNEVQVD 281 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~ 281 (1112)
-+++.|.|.+|+||||||.++....... -..++|++....++.. .+..++.... ...+.++....
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~-----g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~ 132 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEI 132 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHH
Confidence 4589999999999999999887654322 2368899988877643 2344443221 12234444444
Q ss_pred HHHHh-CCCcEEEEEeCCC
Q 047598 282 LKTAV-DGKRFLLVLDDVW 299 (1112)
Q Consensus 282 l~~~l-~~kr~LlVlDdv~ 299 (1112)
+.... +.+.-+||+|.+-
T Consensus 133 ~~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHHTCCSEEEEECGG
T ss_pred HHHHHhccCCCEEEEcCHH
Confidence 44333 2344589999874
No 268
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.59 E-value=0.18 Score=53.78 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=32.2
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 181 YGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 181 vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+|....+..+...+.. .. ......+|+|.|..|+||||+|+.+..-.
T Consensus 70 ~~~~~~l~~~~~~~l~-~~---~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLG-KP---EPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHT-CC---CCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhc-cC---CCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444455555555544 11 23456799999999999999999986643
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.58 E-value=0.033 Score=53.88 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|+|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998754
No 270
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.57 E-value=0.038 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
-.+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 271
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.54 E-value=0.037 Score=54.00 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYN 229 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~ 229 (1112)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 272
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.51 E-value=0.033 Score=55.46 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++|+|+|+.|+||||+|+.+....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998754
No 273
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.46 E-value=0.074 Score=56.19 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999887654
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.40 E-value=0.29 Score=51.97 Aligned_cols=89 Identities=17% Similarity=0.075 Sum_probs=47.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHH--HHHHHHHHHhcCCC---CCCCChHHH-
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVL--SISKALLESITRKP---CHLNTLNEV- 278 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~il~~l~~~~---~~~~~~~~~- 278 (1112)
...++++|+|.+|+||||++..++...... -..+.++... .+... +-+...++..+... ....+....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-----g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~ 175 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-----GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVA 175 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhc-----CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHH
Confidence 456899999999999999999888655322 1234445443 33322 12233444443221 111222222
Q ss_pred HHHHHHHhCCCcEEEEEeCCC
Q 047598 279 QVDLKTAVDGKRFLLVLDDVW 299 (1112)
Q Consensus 279 ~~~l~~~l~~kr~LlVlDdv~ 299 (1112)
...+...+....-++|+|-.-
T Consensus 176 ~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 176 FDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHHHHTTCSEEEEEECC
T ss_pred HHHHHHHHhcCCCEEEEECCC
Confidence 234444444445578888653
No 275
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.35 E-value=0.46 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999998887644
No 276
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.24 E-value=0.05 Score=54.19 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
...+|+|+|+.|+||||+|+.+.....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999987653
No 277
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.17 E-value=0.058 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
...+++|+|+.|+||||+|+.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999764
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.16 E-value=0.043 Score=53.54 Aligned_cols=24 Identities=17% Similarity=0.522 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998653
No 279
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.16 E-value=0.1 Score=47.46 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=43.1
Q ss_pred cEEEccccccc--cccccccCCCCCcEEeecCCCCCcccCcc-ccCCccccEEeecCCC
Q 047598 618 RYLNLADTMIR--TLPESTNSLLNLEILILRNCSRLKKLPSK-MRNLINLHHLDIKGAN 673 (1112)
Q Consensus 618 r~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 673 (1112)
..++.+++.++ .+|..+- .+|++|+|++| .+..+|.. |..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 47888888888 8887643 47999999998 78888765 6778999999999886
No 280
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.12 E-value=0.081 Score=56.95 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 189 RILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 189 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
++++.+... ..-..++|+|.+|+|||||++.+.+..... +..+.+ +++-+++..
T Consensus 163 raID~~~pi-------~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~--~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPI-------GRGQRGLIVAPPKAGKTMLLQNIAQSIAYN--HPDCVL-MVLLIDERP 216 (422)
T ss_dssp HHHHHHSCC-------BTTCEEEEECCSSSSHHHHHHHHHHHHHHH--CTTSEE-EEEEESSCH
T ss_pred eeeeeeeee-------cCCcEEEEecCCCCChhHHHHHHHHHHhhc--CCCeeE-EEEEecCCh
Confidence 455666541 223488999999999999999887754321 123444 357777664
No 281
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.08 E-value=0.041 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+.|.|+|+.|+||||+|+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999998754
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.07 E-value=0.038 Score=53.50 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998753
No 283
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.04 E-value=0.064 Score=59.26 Aligned_cols=53 Identities=25% Similarity=0.282 Sum_probs=36.6
Q ss_pred ceecchhhHHHHHHHHhcC-------CCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 179 AVYGRDKDKARILKMVLST-------DEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++|.+..++.+...+... ..........+.+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4788888888888777210 0000011234568899999999999999999865
No 284
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.98 E-value=0.62 Score=49.90 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=38.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESI 265 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 265 (1112)
-.++.|.|.+|+||||+|..++...... + ..++|++.. .+..++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~---g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDN---D--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTT---T--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc---C--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 4589999999999999999988665332 2 567888776 45566666666553
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.83 E-value=0.099 Score=55.29 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 186 DKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
..++++..++.... ......+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~---~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKK---AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCC---CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc---CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34445555443111 2344679999999999999999999864
No 286
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.78 E-value=0.064 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998653
No 287
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.76 E-value=0.054 Score=53.55 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998764
No 288
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.73 E-value=0.056 Score=52.16 Aligned_cols=23 Identities=26% Similarity=0.706 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYN 229 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~ 229 (1112)
-.+++|+|..|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46999999999999999997543
No 289
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.65 E-value=0.065 Score=61.21 Aligned_cols=43 Identities=23% Similarity=0.320 Sum_probs=35.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 179 AVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++|++..++.+...+.. + .-|.|+|.+|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~------~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS------G----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH------T----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhc------C----CeeEeecCchHHHHHHHHHHHHHH
Confidence 478899888888887765 1 257899999999999999999865
No 290
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.63 E-value=0.31 Score=53.82 Aligned_cols=60 Identities=8% Similarity=0.045 Sum_probs=38.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccc-cCCCCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNA-KDFKFDIKAWVCISDVFDVLSISKALLESITR 267 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 267 (1112)
-.++.|+|.+|+|||||+..++-...... .++.-..++|++....+....+ +.+++.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 45999999999999999997653221110 0112346888888776665543 335555543
No 291
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.59 E-value=0.048 Score=54.42 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998753
No 292
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.59 E-value=0.055 Score=53.90 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
..+|+|+|+.|+||||+++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999764
No 293
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.58 E-value=0.11 Score=55.62 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=33.0
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 181 YGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 181 vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
|+-+.-.+++++.+.. .- ..+....|.|+|+.|+||||+++.++....
T Consensus 2 ~~~~~L~~~il~~l~~-~i---~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDN-RI---EDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CCHHHHHHHHHHHHHH-TT---TTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH-Hh---ccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3445556667666643 11 123456789999999999999998887543
No 294
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.58 E-value=0.054 Score=52.17 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 295
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.57 E-value=0.13 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+|.|.|++|+||+|.|+.+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998764
No 296
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.53 E-value=0.062 Score=55.72 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|.|+|+.|+||||||+.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998754
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.52 E-value=0.067 Score=52.66 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYN 229 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~ 229 (1112)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999975
No 298
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.46 E-value=0.068 Score=53.30 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
....+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999999874
No 299
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.43 E-value=0.079 Score=52.87 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
....+|+|.|+.|+||||+|+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345799999999999999999998653
No 300
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.43 E-value=0.072 Score=53.34 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
....+|+|+|..|+||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999999864
No 301
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.42 E-value=0.062 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|.|.|++|+||||+|+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998754
No 302
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.42 E-value=0.27 Score=53.57 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=33.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCC-CceeEEEEeCCCCCH
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFK-FDIKAWVCISDVFDV 254 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~-F~~~~wv~~~~~~~~ 254 (1112)
..-.++.|+|..|+|||||+..++.........+. -..++|++....+..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~ 179 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 179 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCH
Confidence 34579999999999999999998875421100011 124588887665543
No 303
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.42 E-value=0.065 Score=53.69 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+++|+|+.|+|||||++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998764
No 304
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.35 E-value=0.054 Score=52.85 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++|.|+|++|+||||+|+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998654
No 305
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.30 E-value=0.064 Score=52.52 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
..+|+|+|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999875
No 306
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.30 E-value=0.015 Score=57.05 Aligned_cols=108 Identities=12% Similarity=-0.020 Sum_probs=52.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCC--CCCCChHHHHHHHHHH
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKP--CHLNTLNEVQVDLKTA 285 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~--~~~~~~~~~~~~l~~~ 285 (1112)
.++.|+|..|+||||++..+..+.... + . .++.+..... ...-...+...++... ....+.. .+.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~---g-~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~ 72 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG---K-K-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPE----EMRKY 72 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT---T-C-EEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC---C-C-eEEEEeeccc--cccCcccEEecCCCceeeEEECCHH----HHHHH
Confidence 478899999999999997666554322 1 1 2222322210 0000000000011000 0011111 22333
Q ss_pred hCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCCh
Q 047598 286 VDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHS 329 (1112)
Q Consensus 286 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 329 (1112)
+.++.-+|++|.+..... .|.+....+.+. |..|++|.+..
T Consensus 73 ~~~~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 73 IEEDTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp CCTTEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEESB
T ss_pred hcCCCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeecc
Confidence 344566999999976432 355544444333 77899988753
No 307
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.27 E-value=0.81 Score=55.14 Aligned_cols=159 Identities=16% Similarity=0.126 Sum_probs=78.3
Q ss_pred cceecchhhHHHHHHHHhcCCCC-----CCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC
Q 047598 178 RAVYGRDKDKARILKMVLSTDEK-----TDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF 252 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~ 252 (1112)
..+.|.++.++++.+.+.-+-.. ..+-...+=|.++|++|.|||.+|+++++..... | +.++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f-----~~v~--- 543 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----F-----ISIK--- 543 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----E-----EECC---
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----e-----EEec---
Confidence 45678888888877665421100 0012233446799999999999999999875422 2 2222
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCCcEEEEEeCCCCCCh--------------hhHHHHHhcccCCC-
Q 047598 253 DVLSISKALLESITRKPCHLNTLNEVQVDLKTAVDGKRFLLVLDDVWNEDY--------------SLWVDLKAPLLAAA- 317 (1112)
Q Consensus 253 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~~~- 317 (1112)
..+ ++... -......+...+...-+..+++|++|+++..-. ....++...+....
T Consensus 544 -~~~----l~s~~-----vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 544 -GPE----LLTMW-----FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp -HHH----HHTTT-----CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred -cch----hhccc-----cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 111 11111 112222333333333356789999999864210 11222333333222
Q ss_pred -CCcEEEEEcCChhhhhh--c---CCCceeeCCCCChHhHHHHHHHhH
Q 047598 318 -PNSKMIITTRHSHVAST--M---GPIKHYNLKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 318 -~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~ 359 (1112)
.+--||-||..++.... . .-...+.+...+.++-.++|..+.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 22233446654433221 1 234567777666666667776554
No 308
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.26 E-value=0.087 Score=51.68 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=23.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
....+|.|+|++|+||||+|+.+.....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999987653
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.24 E-value=0.067 Score=53.43 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998754
No 310
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.23 E-value=0.056 Score=54.01 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++|+|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 311
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.19 E-value=0.071 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 312
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.19 E-value=0.078 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYN 229 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~ 229 (1112)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 313
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.17 E-value=0.077 Score=53.35 Aligned_cols=25 Identities=40% Similarity=0.395 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
...+|+|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998764
No 314
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.15 E-value=0.067 Score=50.93 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++++|+|..|+|||||+..+....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999988764
No 315
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.12 E-value=0.079 Score=53.02 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=24.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+||.|.|++|+||||.|+.+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998764
No 316
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.08 E-value=0.062 Score=52.13 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.|.|+|++|+||||+|+.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 317
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.04 E-value=0.079 Score=52.40 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|+|.|++|+||||+|+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999987653
No 318
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.04 E-value=0.058 Score=52.99 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998654
No 319
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.02 E-value=0.49 Score=52.61 Aligned_cols=27 Identities=33% Similarity=0.277 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
..++|.++|.+|+||||++..+.....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999988876553
No 320
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.01 E-value=0.07 Score=53.29 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 047598 209 VIPIVGMAGVGKTTLAREVYN 229 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~ 229 (1112)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999986
No 321
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.97 E-value=0.083 Score=55.09 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 322
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.96 E-value=0.075 Score=53.17 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998754
No 323
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.94 E-value=0.086 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.0
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
..-.+|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999999999864
No 324
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.94 E-value=0.68 Score=51.76 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=30.1
Q ss_pred hHHHHHHHHhcCCCCC-CCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 186 DKARILKMVLSTDEKT-DDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 186 ~~~~l~~~L~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++.+++....... ......++|.++|.+|+||||+|..+....
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455666664311110 012457899999999999999998887654
No 325
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.94 E-value=0.092 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998643
No 326
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.90 E-value=0.084 Score=51.19 Aligned_cols=24 Identities=42% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHhcccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.++|+|..|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999876643
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.89 E-value=0.071 Score=52.79 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|+|.|++|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998653
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.88 E-value=0.077 Score=54.06 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999864
No 329
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.85 E-value=0.059 Score=52.43 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
|.|.|+|++|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999998653
No 330
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.84 E-value=0.089 Score=56.23 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=21.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.+.+||+|.|-|||||||.|-.+.--
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a 71 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA 71 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH
Confidence 45789999999999999998665543
No 331
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.77 E-value=0.12 Score=53.48 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=29.6
Q ss_pred hHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 186 DKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..++++..+..... ......+|.|+|++|+||||+|+.+....
T Consensus 14 ~~~~~~~~~~~~~~---~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 14 ALARNLRSLTRGKK---SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHHHTTCC---CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCC---cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34445444443111 23445799999999999999999998754
No 332
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.75 E-value=0.065 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+|.|+|++|+||||+|+.+....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998753
No 333
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.74 E-value=0.1 Score=51.46 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|+|.|++|+||||+|+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998653
No 334
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.73 E-value=0.12 Score=53.07 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+|+|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998653
No 335
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.66 E-value=0.1 Score=50.86 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+|+|+|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998753
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.62 E-value=0.093 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.+|+|.|++|+||||+|+.+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999987654
No 337
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.61 E-value=0.091 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.60 E-value=0.067 Score=51.70 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 339
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.60 E-value=0.15 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+|+|+|.+|+|||||+..+....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999988753
No 340
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.54 E-value=0.099 Score=54.23 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=22.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998753
No 341
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.54 E-value=0.084 Score=51.76 Aligned_cols=26 Identities=15% Similarity=0.531 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..++++|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998654
No 342
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.51 E-value=0.072 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999998764
No 343
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.47 E-value=0.11 Score=55.57 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
....+|+|+|..|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 346799999999999999999987654
No 344
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.46 E-value=0.31 Score=55.63 Aligned_cols=108 Identities=19% Similarity=0.139 Sum_probs=56.2
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHH-------
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVD------- 281 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~------- 281 (1112)
.+.|.|.+|+||||++..+....... +. ..++.++.. . ...+.+.+.++.. ..+.......
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~---~~-~~il~~a~T-~----~Aa~~l~~~~~~~---~~T~h~~~~~~~~~~~~ 114 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST---GE-TGIILAAPT-H----AAKKILSKLSGKE---ASTIHSILKINPVTYEE 114 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT---TC-CCEEEEESS-H----HHHHHHHHHHSSC---EEEHHHHHTEEEEECSS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc---CC-ceEEEecCc-H----HHHHHHHhhhccc---hhhHHHHhccCcccccc
Confidence 89999999999999998888765322 11 223333222 1 1112222222211 1111111000
Q ss_pred ---H---HHHhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChhh
Q 047598 282 ---L---KTAVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSHV 331 (1112)
Q Consensus 282 ---l---~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v 331 (1112)
+ ......+--+||+|++...+...+..+...+. .+.++++.--..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Ql 167 (459)
T 3upu_A 115 NVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQI 167 (459)
T ss_dssp CEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTSC
T ss_pred cchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHHc
Confidence 0 00001123488999998776666666665553 46678877655543
No 345
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.44 E-value=0.088 Score=52.25 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|+|.|++|+||||+|+.+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998753
No 346
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.43 E-value=0.32 Score=54.24 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=32.7
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC-HHHHHHHH
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD-VLSISKAL 261 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 261 (1112)
.++|+|.+|+|||||+..+..+.... .-+.++++-+++... ..++.+++
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~----~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE----HGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH----TCCCEEEEEESSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc----cCcEEEEeeeccCchHHHHHHHHh
Confidence 58899999999999999888765422 123456677776643 23344434
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.42 E-value=0.1 Score=51.96 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|.|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998753
No 348
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.38 E-value=0.096 Score=51.74 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 349
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.32 E-value=0.099 Score=51.09 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=48.1
Q ss_pred cccCCcccEEEeccc-cccc-----ccccccCCCcCcEEEccccccc-----cccccccCCCCCcEEeecCCCCCcc---
Q 047598 588 LPKFKRLRVLSLQRY-YIGE-----LLVSFEDLKLLRYLNLADTMIR-----TLPESTNSLLNLEILILRNCSRLKK--- 653 (1112)
Q Consensus 588 ~~~~~~L~~L~L~~~-~~~~-----lp~~~~~l~~Lr~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~--- 653 (1112)
+..-+.|+.|+|+++ .|.. +-+.+..-..|+.|+|++|.|. .+-+.+..-+.|++|+|++| .++.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 344466777777764 5532 3344555667777777777765 23344455567777777776 3432
Q ss_pred --cCccccCCccccEEeecCC
Q 047598 654 --LPSKMRNLINLHHLDIKGA 672 (1112)
Q Consensus 654 --lp~~i~~L~~L~~L~L~~~ 672 (1112)
+-..+..-+.|++|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 2223333445666666544
No 350
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.27 E-value=0.13 Score=48.63 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.-.+++|+|..|+|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34699999999999999999987754
No 351
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.18 E-value=0.38 Score=51.63 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=37.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESIT 266 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 266 (1112)
-.++.|.|.+|+||||+|..++...... -..++|++.. .+..++...++....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~-----g~~Vl~fSlE--ms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND-----DRGVAVFSLE--MSAEQLALRALSDLT 98 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-----TCEEEEEESS--SCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCC--CCHHHHHHHHHHHhh
Confidence 3589999999999999999988765321 2356777664 445677777766543
No 352
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.16 E-value=0.1 Score=53.83 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|+|+|+.|+||||+++.+.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998543
No 353
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.13 E-value=0.12 Score=53.22 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
...+|+|.|..|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998764
No 354
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.04 E-value=0.077 Score=51.88 Aligned_cols=24 Identities=38% Similarity=0.371 Sum_probs=17.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998654
No 355
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.02 E-value=0.15 Score=51.62 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=30.2
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 183 RDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++..+.+.+.+.. ....+|+|+|.+|+|||||+..+....
T Consensus 14 ~~~~~~~~~~~~~~--------~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRE--------SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHH--------HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcc--------cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555555533 356899999999999999999887653
No 356
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.93 E-value=0.11 Score=53.70 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|+|+|+.|+||||+++.+.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999998654
No 357
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.90 E-value=0.12 Score=51.74 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|+.|+|||||++.+..-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 599999999999999999987643
No 358
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.90 E-value=0.13 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.631 Sum_probs=22.0
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYN 229 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~ 229 (1112)
+...+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999973
No 359
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.85 E-value=0.57 Score=52.00 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.++++|+|.+|+||||++..++....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999988876553
No 360
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=90.75 E-value=1.1 Score=49.79 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=43.8
Q ss_pred HHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC-HHHHHHHHHHH
Q 047598 189 RILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD-VLSISKALLES 264 (1112)
Q Consensus 189 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~ 264 (1112)
++++.|... ..-.-++|+|.+|+|||+|+..+.+.... .+-+.++++-+++... +.++.+++.+.
T Consensus 142 r~ID~l~pi-------gkGQr~~Ifgg~G~GKT~L~~~i~~~~~~----~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-------AKGGKIGLFGGAGVGKTVLIMELINNVAK----AHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-------ETTCEEEEEECTTSSHHHHHHHHHHHTTT----TCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-------ccCCeeeeecCCCCChHHHHHHHHHhhHh----hCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 456666541 22347899999999999999999876421 2345677888887653 44566666554
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.70 E-value=0.11 Score=52.47 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998753
No 362
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.70 E-value=0.12 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 363
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.64 E-value=0.12 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998764
No 364
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.59 E-value=0.12 Score=51.94 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998764
No 365
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.58 E-value=0.76 Score=51.34 Aligned_cols=53 Identities=25% Similarity=0.229 Sum_probs=39.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC-HHHHHHHHHHH
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD-VLSISKALLES 264 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~ 264 (1112)
.-++|.|..|+|||+|+..+.++... .+-+.++++-+++... +.++.+++.+.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~----~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAK----AHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTT----TCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHh----hCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 46899999999999999999886422 2346788888887764 44566666543
No 366
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.54 E-value=0.11 Score=52.56 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999987643
No 367
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.50 E-value=0.62 Score=49.24 Aligned_cols=88 Identities=18% Similarity=-0.001 Sum_probs=46.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC-CHHHHHHHHHHHhcCCC---CCCCChHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF-DVLSISKALLESITRKP---CHLNTLNEVQVDL 282 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~---~~~~~~~~~~~~l 282 (1112)
.++++++|.+|+||||++..+....... -..+.++...... ...+.++...+..+... ....+..+.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-----g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~ 172 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-----GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRG 172 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-----TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHH
Confidence 6799999999999999998887654321 1235555554322 22223333444433321 1112333333333
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 047598 283 KTAVD-GKRFLLVLDDVW 299 (1112)
Q Consensus 283 ~~~l~-~kr~LlVlDdv~ 299 (1112)
.+.++ ..-=++|+|-.-
T Consensus 173 l~~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 173 VEKFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHHHTTCSEEEEECCC
T ss_pred HHHHHhCCCCEEEEeCCC
Confidence 33333 222377888653
No 368
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.49 E-value=0.15 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYN 229 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~ 229 (1112)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 369
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.47 E-value=0.13 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|+|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998754
No 370
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.45 E-value=0.15 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+|.|.|+.|+||||+|+.+....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 371
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.44 E-value=0.12 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997653
No 372
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.43 E-value=0.12 Score=52.64 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...|.|.|++|+||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998753
No 373
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.42 E-value=0.13 Score=51.94 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997653
No 374
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.38 E-value=0.13 Score=54.60 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..+++|+|.+|+||||+++.++.-.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4599999999999999999987654
No 375
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.36 E-value=0.39 Score=48.76 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=31.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCC-CCceeEEEEeCCCCC
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDF-KFDIKAWVCISDVFD 253 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~-~F~~~~wv~~~~~~~ 253 (1112)
.-.+++|+|..|+|||||++.++.......... .-..++|+.-.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 347999999999999999999976332210001 234577777654433
No 376
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.35 E-value=0.13 Score=51.63 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|+.|+|||||.+.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4599999999999999999987654
No 377
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.17 E-value=0.073 Score=53.63 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+|+|.|..|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999997654
No 378
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.13 E-value=0.27 Score=53.84 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 187 KARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+++.+.. ......+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~------~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLP------DSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGG------GCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHh------hcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455555543 23457899999999999999998887543
No 379
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.11 E-value=0.11 Score=53.38 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|+|+|+.|+||||+++.+....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998754
No 380
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.07 E-value=0.11 Score=57.04 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=33.1
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..++|.+..+..+...... . ...-+.|+|.+|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~-~-------~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVD-P-------GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHC-G-------GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhC-C-------CCceEEEECCCCccHHHHHHHHHHhC
Confidence 4589998866665444432 1 11238899999999999999998754
No 381
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.00 E-value=0.16 Score=54.36 Aligned_cols=24 Identities=42% Similarity=0.420 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998753
No 382
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.90 E-value=0.19 Score=48.99 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+.+.|+|++|+||||+|..+++..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999998888764
No 383
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.87 E-value=0.092 Score=50.40 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
++++|+|..|+|||||++.+..-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4899999999999999999876543
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.84 E-value=0.12 Score=52.33 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..|.|.|++|+||||+|+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998754
No 385
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.77 E-value=0.16 Score=48.80 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+++|+|..|+|||||+..+....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999988753
No 386
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.73 E-value=0.15 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+++|+|..|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999887654
No 387
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.72 E-value=0.19 Score=53.52 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++|.|+|+.|+||||||..+++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4699999999999999999999764
No 388
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.66 E-value=0.17 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998753
No 389
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.54 E-value=1.7 Score=49.36 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=21.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...++|+|+|.+|+||||++..+....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998887543
No 390
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.51 E-value=1 Score=51.99 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=37.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESI 265 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 265 (1112)
-.++.|.|.+|+||||+|.+++...... +-..++|++.... ..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~----~g~~vl~~s~E~s--~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA----MGKKVGLAMLEES--VEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT----SCCCEEEEESSSC--HHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh----cCCcEEEEeccCC--HHHHHHHHHHHH
Confidence 4588999999999999999988765422 1235778877554 556766665544
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.48 E-value=0.18 Score=50.99 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+|+|.|++|+||||+|+.+....
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998653
No 392
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.48 E-value=0.2 Score=53.59 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
...+|+|+|..|+|||||++.+..-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998764
No 393
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.39 E-value=0.14 Score=51.76 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..|.|.|++|+||||+|+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998754
No 394
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.34 E-value=0.21 Score=53.05 Aligned_cols=26 Identities=38% Similarity=0.387 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+++|+|..|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999887654
No 395
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.29 E-value=0.17 Score=51.65 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.+..-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998643
No 396
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.27 E-value=0.18 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|+.|+|||||.+.+..-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 489999999999999999997643
No 397
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.26 E-value=0.19 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
++|.|+|+.|+||||||+.+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998753
No 398
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.14 E-value=0.19 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYN 229 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~ 229 (1112)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999999998873
No 399
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.14 E-value=0.22 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998753
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.09 E-value=0.19 Score=50.82 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998653
No 401
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.01 E-value=0.14 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=16.0
Q ss_pred EEEEEEccCCCcHHHHHHHHh-cc
Q 047598 208 RVIPIVGMAGVGKTTLAREVY-ND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~-~~ 230 (1112)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 53
No 402
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.00 E-value=0.19 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.+++|+|..|+|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999764
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.81 E-value=0.2 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998753
No 404
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.73 E-value=0.53 Score=50.32 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=23.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
...++++|+|.+|+||||++..++....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999988876543
No 405
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.62 E-value=0.26 Score=52.86 Aligned_cols=26 Identities=38% Similarity=0.354 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+++|+|..|+||||+++.+....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887654
No 406
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=88.61 E-value=0.3 Score=54.44 Aligned_cols=55 Identities=22% Similarity=0.345 Sum_probs=36.8
Q ss_pred cceecchhhHHHHHHHHhcC------CCCCCCCCCeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 178 RAVYGRDKDKARILKMVLST------DEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~------~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
..++|.+..+..+...+... ..........+-+.++|++|+||||+|+.++....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46789888888886665220 00000111234588999999999999999988653
No 407
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.56 E-value=0.22 Score=52.04 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.+++|+|+.|+|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999998764
No 408
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.55 E-value=0.22 Score=50.84 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||++.+..-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997654
No 409
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.44 E-value=0.18 Score=50.29 Aligned_cols=22 Identities=36% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 047598 209 VIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
+++|+|..|+|||||++.+..-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999998754
No 410
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.39 E-value=0.23 Score=55.60 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=23.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999998754
No 411
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.33 E-value=0.23 Score=50.67 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..|.|.|+.|+||||+|+.+.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 412
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.33 E-value=0.23 Score=50.81 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
....+|+|+|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999864
No 413
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.32 E-value=0.23 Score=51.58 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.+..-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997643
No 414
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.28 E-value=0.25 Score=50.68 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
-.+++|+|..|+|||||.+.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999998764
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.19 E-value=0.25 Score=52.83 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999863
No 416
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.15 E-value=0.24 Score=51.52 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||++.+..-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 489999999999999999998643
No 417
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.13 E-value=0.21 Score=49.97 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997643
No 418
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.13 E-value=0.3 Score=50.87 Aligned_cols=26 Identities=38% Similarity=0.423 Sum_probs=22.5
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
....++.+.|.||+||||++..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998754
No 419
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.08 E-value=0.24 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.++.-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998643
No 420
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.07 E-value=0.27 Score=47.67 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+.|.|.|..|+||||||.++....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998754
No 421
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.04 E-value=0.24 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.+..-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 589999999999999999997643
No 422
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.99 E-value=1.6 Score=49.29 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=37.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHh
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESI 265 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 265 (1112)
-.++.|.|.+|+||||+|..++...... .-..++|++... +..++...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~----~g~~vl~~slE~--~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK----EGVGVGIYSLEM--PAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT----TCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEECCC--CHHHHHHHHHHHH
Confidence 4589999999999999999888765321 123577777754 4556666666543
No 423
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=87.98 E-value=1.9 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|..|+|||||++.+..-.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987654
No 424
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.98 E-value=0.32 Score=51.01 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..++|.|+|+.|+||||||..+++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998753
No 425
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.97 E-value=0.28 Score=53.17 Aligned_cols=26 Identities=38% Similarity=0.387 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+++|+|..|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999887654
No 426
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=87.95 E-value=1.1 Score=48.15 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 187 KARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
--++++.+... ..-+-++|+|.+|+|||+|++++.+..... +..+.+ +++-+++.
T Consensus 162 GiraID~l~Pi-------grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~--~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 162 STRLIDLFAPI-------GKGQRGMIVAPPKAGKTTILKEIANGIAEN--HPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHHSCC-------BTTCEEEEEECTTCCHHHHHHHHHHHHHHH--CTTSEE-EEEECSCC
T ss_pred cchhhhhcccc-------cCCceEEEecCCCCChhHHHHHHHHHHhhc--CCCeEE-EEEEeccC
Confidence 34567777541 223467999999999999999888764322 023333 45666654
No 427
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.92 E-value=0.26 Score=50.72 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.+++|+|..|+|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 428
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.91 E-value=0.25 Score=51.14 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.++.-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999997643
No 429
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.89 E-value=0.26 Score=50.04 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.+..-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998754
No 430
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.87 E-value=0.35 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 431
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.85 E-value=0.26 Score=50.66 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.+..-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997653
No 432
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.72 E-value=0.26 Score=50.81 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.++.-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997643
No 433
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.63 E-value=0.28 Score=51.08 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.+++|+|..|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 434
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.62 E-value=0.27 Score=50.01 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=22.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
....+|+|.|..|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998764
No 435
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.60 E-value=0.14 Score=54.18 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=18.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
..+|+|.|..|+||||+|+.+.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 436
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.48 E-value=0.34 Score=50.21 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
-.+++|+|+.|+|||||++.+..-
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 469999999999999999888764
No 437
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.46 E-value=0.28 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.+..-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 489999999999999999997643
No 438
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.45 E-value=0.28 Score=48.15 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988754
No 439
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.43 E-value=0.28 Score=51.20 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||++.++.-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999997653
No 440
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.42 E-value=0.34 Score=49.12 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=23.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+|+|.|+.|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998765
No 441
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.37 E-value=0.23 Score=48.52 Aligned_cols=113 Identities=18% Similarity=0.114 Sum_probs=70.7
Q ss_pred cCCCcceeccccccCCcccccccccccccccccCCcccEEEeccccccc-----ccccccCCCcCcEEEccccccc----
Q 047598 558 QTENLRTFLPIRIRGGTICSYITGIVLSDLLPKFKRLRVLSLQRYYIGE-----LLVSFEDLKLLRYLNLADTMIR---- 628 (1112)
Q Consensus 558 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----lp~~~~~l~~Lr~L~Ls~n~i~---- 628 (1112)
.-+.|+.|.+.++..... .....+...+..-..|+.|+|++|.++. +-..+..-+.|++|+|++|.|.
T Consensus 39 ~n~~L~~L~L~~nn~igd---~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSK---ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp TCSSCCEEECTTCCSSCH---HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred cCCCccEEECCCCCCCCH---HHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 445677776654311000 0011233445666889999999998853 3445666688999999999887
Q ss_pred -cccccccCCCCCcEEeecCCCC--Cc-----ccCccccCCccccEEeecCCC
Q 047598 629 -TLPESTNSLLNLEILILRNCSR--LK-----KLPSKMRNLINLHHLDIKGAN 673 (1112)
Q Consensus 629 -~lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~L~~L~~L~L~~~~ 673 (1112)
.+-+.+..-+.|++|+|++|.. ++ .+...+..-+.|+.|+++.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3455666677899999987522 22 122334444667778776654
No 442
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.35 E-value=0.29 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.++.-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999997643
No 443
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.27 E-value=0.28 Score=47.79 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 047598 209 VIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 444
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.23 E-value=0.48 Score=51.85 Aligned_cols=25 Identities=32% Similarity=0.243 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
..++++|+|+.|+|||||++.+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4469999999999999999999864
No 445
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.08 E-value=0.3 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.++.-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999987643
No 446
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.03 E-value=0.3 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.++.-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999998654
No 447
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.03 E-value=1.1 Score=50.96 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=35.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLE 263 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 263 (1112)
-.++.|.|.+|+||||+|..++...... .-..++|++.... ..++...++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~----~g~~Vl~~s~E~s--~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK----TNENVAIFSLEMS--AQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH----SSCCEEEEESSSC--HHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEEECCCC--HHHHHHHHHH
Confidence 3589999999999999999988765422 1125777776543 4556555543
No 448
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.02 E-value=0.31 Score=57.74 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=36.7
Q ss_pred cceecchhhHHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 178 RAVYGRDKDKARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..++|.+..++.+...+.. + ..+.|+|.+|+||||||+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~------g----~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQ------K----RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHT------T----CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccC------C----CEEEEEeCCCCCHHHHHHHHhccC
Confidence 5689999888887777754 1 378999999999999999998865
No 449
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.02 E-value=0.3 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.+++|+|..|+|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998653
No 450
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.96 E-value=3.1 Score=48.75 Aligned_cols=128 Identities=15% Similarity=0.115 Sum_probs=64.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCc-eeEEEEeCC----CCCHHHHH--------------HHHHHHhcCC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFD-IKAWVCISD----VFDVLSIS--------------KALLESITRK 268 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~-~~~wv~~~~----~~~~~~~~--------------~~il~~l~~~ 268 (1112)
.+++|+|..|+|||||++.++.-.......-.+. .+.++.-.. ..++.+.+ .++++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 4899999999999999999987543211001111 233332111 11232222 2233344432
Q ss_pred CCC-----CCCh-HHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHHHHHhcccCC--CCCcEEEEEcCChhhhhhc
Q 047598 269 PCH-----LNTL-NEVQVDLKTAVDGKRFLLVLDDVWNE-DYSLWVDLKAPLLAA--APNSKMIITTRHSHVASTM 335 (1112)
Q Consensus 269 ~~~-----~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 335 (1112)
... .-+- +...-.|.+.|...+=+++||.--.. +...-..+...+... ..|..||++|-+...+..+
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 211 1111 22223456677777889999985331 222222233322221 2356788888887666543
No 451
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.95 E-value=0.32 Score=51.39 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.-.+++|+|..|+|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3458999999999999999998754
No 452
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.93 E-value=0.51 Score=45.96 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999874
No 453
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.91 E-value=0.77 Score=60.63 Aligned_cols=81 Identities=20% Similarity=0.185 Sum_probs=0.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHH
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPC-----HLNTLNEVQVDL 282 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 282 (1112)
++|.|+|++|+|||+||.++..... ..-..++|+++...++... ++.++.... .....++....+
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~-----~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQ-----REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-----HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Q ss_pred HHHh-CCCcEEEEEeCC
Q 047598 283 KTAV-DGKRFLLVLDDV 298 (1112)
Q Consensus 283 ~~~l-~~kr~LlVlDdv 298 (1112)
++.. +.+.-+||+|.+
T Consensus 1498 ~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHHTCCSEEEESCG
T ss_pred HHHHhcCCCCEEEEcCh
No 454
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.86 E-value=0.35 Score=54.34 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=23.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
....+++|+|..|+|||||++.+....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 346799999999999999999988654
No 455
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.81 E-value=0.38 Score=45.40 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.-|+|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999987653
No 456
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=86.79 E-value=0.64 Score=45.82 Aligned_cols=110 Identities=12% Similarity=-0.004 Sum_probs=53.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC--CCCChHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPC--HLNTLNEVQVDLKT 284 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~ 284 (1112)
-.+..++|.-|.||||.|.....+.... ...+.+ +.... +...-...+...++.... ...+.. .+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~----g~kVli-~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~ 96 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA----KQHAIV-FKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFK 96 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT----TCCEEE-EECC-------------------CCEEECSSGG----GGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC----CCEEEE-EEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHH
Confidence 4688999999999999998877766433 233333 22211 111112234444433221 111111 2333
Q ss_pred HhCCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChh
Q 047598 285 AVDGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSH 330 (1112)
Q Consensus 285 ~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 330 (1112)
.+.++--+|++|.+.--+.+..+.+ ..+.+ .|-.||+|-++.+
T Consensus 97 ~~~~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 97 HITEEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp GCCSSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSBC
T ss_pred HHhcCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEecccc
Confidence 3344334999999865443444333 33322 3668999998644
No 457
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.74 E-value=2.1 Score=48.05 Aligned_cols=51 Identities=20% Similarity=0.104 Sum_probs=35.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHH
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLES 264 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~ 264 (1112)
-.++.|.|.+|+||||+|.+++.+.... -..++|++.... ..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~-----g~~vl~fSlEms--~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN-----DDVVNLHSLEMG--KKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT-----TCEEEEECSSSC--TTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc-----CCEEEEEECCCC--HHHHHHHHHHH
Confidence 4589999999999999999888765432 235777766544 33455555544
No 458
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=86.70 E-value=0.4 Score=56.00 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=55.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHH-HHh
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLK-TAV 286 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l 286 (1112)
+++.|.|.+|.||||++..+....... ...+.+...... ..+.+.+.++.. ..+...+..... ...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~------g~~Vl~~ApT~~----Aa~~L~e~~~~~---a~Tih~ll~~~~~~~~ 271 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL------GLEVGLCAPTGK----AARRLGEVTGRT---ASTVHRLLGYGPQGFR 271 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT------TCCEEEEESSHH----HHHHHHHHHTSC---EEEHHHHTTEETTEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc------CCeEEEecCcHH----HHHHhHhhhccc---HHHHHHHHcCCcchhh
Confidence 488899999999999998887654322 123334433221 222232322211 111111100000 000
Q ss_pred -----CCCcEEEEEeCCCCCChhhHHHHHhcccCCCCCcEEEEEcCChh
Q 047598 287 -----DGKRFLLVLDDVWNEDYSLWVDLKAPLLAAAPNSKMIITTRHSH 330 (1112)
Q Consensus 287 -----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 330 (1112)
..+--+||+|.+...+...+..+...++ .+.++|+.--..+
T Consensus 272 ~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 272 HNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp CSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred hhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecccc
Confidence 0122489999997776666666666554 4667777654433
No 459
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=86.61 E-value=0.64 Score=51.74 Aligned_cols=90 Identities=10% Similarity=0.166 Sum_probs=51.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCC-HHHHHHHHHHHhcCCC-------CCCCChHHH-
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFD-VLSISKALLESITRKP-------CHLNTLNEV- 278 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~il~~l~~~~-------~~~~~~~~~- 278 (1112)
.-++|.|.+|+|||+|+.+++++.....+ ..=+.++++-+++... +.++.+.+.+.=.... .+.......
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~-~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGS-ESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTC-SSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccC-CCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 35678899999999999999987654311 1114667777776643 4455555554311100 111111111
Q ss_pred ----HHHHHHHh---CCCcEEEEEeCC
Q 047598 279 ----QVDLKTAV---DGKRFLLVLDDV 298 (1112)
Q Consensus 279 ----~~~l~~~l---~~kr~LlVlDdv 298 (1112)
.-.+.+++ +++.+|+++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11233343 479999999997
No 460
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.59 E-value=0.33 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 461
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=86.58 E-value=0.78 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHhcccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.|+|-|..|+||||.++.+++..+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478889999999999999988764
No 462
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.38 E-value=0.37 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..|+|.|..|+||||+++.+.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998764
No 463
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.35 E-value=0.4 Score=50.77 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
.++++|+|.+|+||||++..++....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998886543
No 464
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.31 E-value=4.1 Score=55.97 Aligned_cols=139 Identities=14% Similarity=0.052 Sum_probs=73.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVLSISKALLESITRKPCHLNTLNEVQVDLKTAVD 287 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1112)
+-|-++|++|+|||++|+.+.... ..+ ..+.+.++...+...+++.+-..+.......... ..-.-.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~------~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~ 1334 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS------SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSD 1334 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC------SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC------CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCC
Confidence 467899999999999997776543 122 3456777777676666655554433211000000 000014
Q ss_pred CCcEEEEEeCCCCCChh------hHHHHHhcccCC-----CC-------CcEEEEEcCChh------hhh-hcCCCceee
Q 047598 288 GKRFLLVLDDVWNEDYS------LWVDLKAPLLAA-----AP-------NSKMIITTRHSH------VAS-TMGPIKHYN 342 (1112)
Q Consensus 288 ~kr~LlVlDdv~~~~~~------~~~~l~~~l~~~-----~~-------gs~iivTTR~~~------v~~-~~~~~~~~~ 342 (1112)
+|++++.+||+.-...+ ..+-+...+..+ .. +..+|.+|--.. +.. .......+.
T Consensus 1335 gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~ 1414 (2695)
T 4akg_A 1335 IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILY 1414 (2695)
T ss_dssp SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEE
T ss_pred CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEE
Confidence 67899999997543222 223333333211 11 123344442221 100 111224678
Q ss_pred CCCCChHhHHHHHHHhH
Q 047598 343 LKRLLDEDCWSIFIKHA 359 (1112)
Q Consensus 343 l~~L~~~~~~~Lf~~~~ 359 (1112)
+...+.++-..+|....
T Consensus 1415 i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCCCTTTHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 88888888888887654
No 465
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.09 E-value=0.67 Score=46.97 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
..+|.|.|..|+||||+++.+.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999988654
No 466
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.07 E-value=0.57 Score=45.86 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999999988753
No 467
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=86.03 E-value=0.42 Score=51.17 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=28.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCC
Q 047598 205 ANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDV 251 (1112)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~ 251 (1112)
...++|+|+|-||+||||+|..+..-.... -..++-|.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~-----G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-----GKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC-----CCeEEEEeCCCC
Confidence 456899999999999999998776654322 124555665543
No 468
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=86.03 E-value=0.86 Score=50.39 Aligned_cols=89 Identities=13% Similarity=0.285 Sum_probs=50.6
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCC-CHHHHHHHHHHH--hcCCC-----CCCCChHHH--
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVF-DVLSISKALLES--ITRKP-----CHLNTLNEV-- 278 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~--l~~~~-----~~~~~~~~~-- 278 (1112)
-++|.|..|+|||+|+.++.+.......+..| .++++-+++.. .+.++.+.+.+. +.... .+.......
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~-~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDF-AVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCE-EEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCce-EEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 46889999999999999999876532000112 56677777654 344555554432 11110 111111111
Q ss_pred ---HHHHHHHh---CCCcEEEEEeCC
Q 047598 279 ---QVDLKTAV---DGKRFLLVLDDV 298 (1112)
Q Consensus 279 ---~~~l~~~l---~~kr~LlVlDdv 298 (1112)
.-.+.+++ +++.+|+++||+
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11233443 378999999999
No 469
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=86.00 E-value=0.41 Score=54.46 Aligned_cols=27 Identities=11% Similarity=-0.045 Sum_probs=23.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
...+|.+.|+.|+||||+|+.+.+...
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999998764
No 470
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.89 E-value=0.66 Score=47.55 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 187 KARILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+..|+.. ..+...-+.++|++|.|||.+|.++.+..
T Consensus 90 ~~~l~~~l~~------~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATK------KFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTT------CSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhC------CCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3345666643 11334579999999999999999998753
No 471
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=85.86 E-value=1.5 Score=48.48 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHhc
Q 047598 204 DANFRVIPIVGMAGVGKTTLAREVYN 229 (1112)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 229 (1112)
....++..|.|.+|.||||+.++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 46789999999999999999999875
No 472
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.83 E-value=0.37 Score=45.65 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999997653
No 473
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.81 E-value=0.39 Score=49.76 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.+++|+|..|+|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 474
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.80 E-value=0.37 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
-.+++|+|.+|+|||||++.++....
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35999999999999999999877643
No 475
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.79 E-value=0.37 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.++.|+|.+|+||||||..+...
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999988753
No 476
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.67 E-value=0.31 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|..|+|||||++.+..-.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3589999999999999999997644
No 477
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.61 E-value=0.52 Score=44.79 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.--|+|+|.+|+|||||+..+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4467899999999999999987653
No 478
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.57 E-value=0.42 Score=45.83 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.--|+|+|.+|+|||||...+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987653
No 479
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.53 E-value=0.97 Score=45.02 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
...|+|.|+.|+||||+++.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987654
No 480
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.46 E-value=0.41 Score=46.82 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
--|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998653
No 481
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=85.36 E-value=0.38 Score=51.62 Aligned_cols=26 Identities=38% Similarity=0.645 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
...+++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999998653
No 482
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=85.33 E-value=1.7 Score=44.10 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=16.9
Q ss_pred EEEEEEccCCCcHHHHHHHHh
Q 047598 208 RVIPIVGMAGVGKTTLAREVY 228 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~ 228 (1112)
+.+.|+|..|+||||+.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 378999999999998765443
No 483
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=85.28 E-value=0.33 Score=50.57 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
+...|+|.|..|+||||+|+.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998754
No 484
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=85.23 E-value=0.44 Score=51.98 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
++|+|.|+.|+||||||..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58999999999999999999865
No 485
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.02 E-value=0.43 Score=49.71 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++|+|..|+|||||.+.++.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988643
No 486
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=85.02 E-value=0.45 Score=45.74 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
No 487
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.01 E-value=0.61 Score=45.17 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999999865
No 488
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=84.86 E-value=1.9 Score=48.69 Aligned_cols=58 Identities=16% Similarity=0.219 Sum_probs=40.2
Q ss_pred HHHHHHhcCCCCCCCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCCCceeEEEEeCCCCCHH-HHHHH
Q 047598 189 RILKMVLSTDEKTDDDANFRVIPIVGMAGVGKTTLAREVYNDKSLNAKDFKFDIKAWVCISDVFDVL-SISKA 260 (1112)
Q Consensus 189 ~l~~~L~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~~~wv~~~~~~~~~-~~~~~ 260 (1112)
++++.|... ..-.-++|.|..|+|||+|+.++.+.. +-+.++++-+++..+-. ++.+.
T Consensus 216 rvID~l~Pi-------gkGqr~~I~g~~g~GKT~L~~~ia~~~-------~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 216 RVIDTFFPQ-------AKGGTAAIPGPAGSGKTVTQHQLAKWS-------DAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHHSCE-------ETTCEEEECSCCSHHHHHHHHHHHHHS-------SCSEEEEEECCSSSSHHHHHHHH
T ss_pred chhhccCCc-------ccCCeEEeecCCCCCHHHHHHHHHhcc-------CCCEEEEEEecccHHHHHHHHHH
Confidence 456666541 223478999999999999999997752 33578888898877543 33333
No 489
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=84.83 E-value=0.89 Score=45.26 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=22.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcccc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYNDKS 232 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~~~ 232 (1112)
..|.|.|..|+||||+++.+.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999988764
No 490
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=84.78 E-value=0.47 Score=45.05 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
..-|+|+|.+|+|||||...+....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3467899999999999999987654
No 491
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=84.74 E-value=0.48 Score=46.02 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 047598 209 VIPIVGMAGVGKTTLAREVYN 229 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~ 229 (1112)
+.+|+|..|+|||||+.+++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999864
No 492
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=84.65 E-value=0.5 Score=45.01 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYN 229 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~ 229 (1112)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999864
No 493
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=84.65 E-value=0.48 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
.+++|+|..|+|||||.+.+.--
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 48999999999999999998764
No 494
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=84.60 E-value=0.44 Score=50.08 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 047598 207 FRVIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 207 ~~vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-.+++|+|..|+|||||.+.+..-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999998654
No 495
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=84.50 E-value=0.57 Score=45.04 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557889999999999999998764
No 496
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.48 E-value=0.51 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 047598 208 RVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 208 ~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 497
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=84.48 E-value=0.47 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
.++|.|++|+||||+|+.+.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998764
No 498
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=84.46 E-value=0.49 Score=44.90 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 047598 209 VIPIVGMAGVGKTTLAREVYNDK 231 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~~ 231 (1112)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999987653
No 499
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=84.46 E-value=0.44 Score=45.25 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 047598 209 VIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 209 vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998654
No 500
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=84.44 E-value=0.47 Score=52.49 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcc
Q 047598 206 NFRVIPIVGMAGVGKTTLAREVYND 230 (1112)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLa~~v~~~ 230 (1112)
...+++|+|..|+|||||.+.+..-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3569999999999999999999873
Done!