Query 047599
Match_columns 165
No_of_seqs 148 out of 1471
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 12:46:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03003 Probable polygalactur 100.0 1.5E-43 3.2E-48 312.8 19.9 162 1-165 147-379 (456)
2 PLN02793 Probable polygalactur 100.0 1.6E-42 3.5E-47 306.3 19.8 158 1-164 186-412 (443)
3 PLN02155 polygalacturonase 100.0 2.2E-42 4.8E-47 301.6 19.5 157 2-164 155-381 (394)
4 PLN02218 polygalacturonase ADP 100.0 8.5E-42 1.8E-46 300.8 19.5 153 1-164 201-421 (431)
5 PLN02188 polygalacturonase/gly 100.0 1.7E-41 3.6E-46 296.9 19.9 159 2-165 165-394 (404)
6 PLN03010 polygalacturonase 100.0 1.8E-41 3.9E-46 296.9 19.7 158 1-164 166-392 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 9.2E-38 2E-42 266.3 15.6 154 2-164 102-323 (326)
8 COG5434 PGU1 Endopygalactoruna 99.9 9.3E-25 2E-29 196.3 14.3 131 2-146 248-398 (542)
9 PF03718 Glyco_hydro_49: Glyco 99.2 1.5E-10 3.2E-15 104.1 11.9 133 2-147 330-490 (582)
10 smart00656 Amb_all Amb_all dom 98.2 4.3E-05 9.4E-10 60.9 11.9 101 7-112 33-145 (190)
11 PLN02793 Probable polygalactur 98.1 7.2E-05 1.6E-09 66.9 13.4 68 42-112 288-370 (443)
12 PLN02188 polygalacturonase/gly 98.0 0.00017 3.7E-09 63.8 13.4 68 42-111 266-349 (404)
13 PF00295 Glyco_hydro_28: Glyco 98.0 4.7E-05 1E-09 65.2 9.2 15 2-16 125-139 (326)
14 TIGR03805 beta_helix_1 paralle 97.9 0.00018 4E-09 61.5 11.3 82 2-86 64-157 (314)
15 PLN02218 polygalacturonase ADP 97.9 0.00029 6.3E-09 62.9 12.8 66 43-111 304-383 (431)
16 PLN03003 Probable polygalactur 97.8 0.00038 8.1E-09 62.6 13.0 13 2-14 171-183 (456)
17 PLN02155 polygalacturonase 97.7 0.00066 1.4E-08 60.0 12.7 68 43-112 257-339 (394)
18 PF00544 Pec_lyase_C: Pectate 97.7 0.00015 3.2E-09 58.3 7.9 96 14-112 44-159 (200)
19 PF13229 Beta_helix: Right han 97.6 0.0012 2.6E-08 48.6 10.2 101 2-112 10-113 (158)
20 PLN03010 polygalacturonase 97.5 0.0028 6.1E-08 56.3 13.2 69 42-112 268-350 (409)
21 COG3866 PelB Pectate lyase [Ca 97.3 0.0048 1E-07 52.9 12.1 96 15-112 124-230 (345)
22 PF12708 Pectate_lyase_3: Pect 97.3 0.018 3.8E-07 45.1 14.2 104 20-146 96-220 (225)
23 PF13229 Beta_helix: Right han 97.2 0.0034 7.3E-08 46.1 8.8 93 33-148 22-114 (158)
24 PF12708 Pectate_lyase_3: Pect 96.9 0.0051 1.1E-07 48.2 8.0 96 2-112 122-221 (225)
25 TIGR03805 beta_helix_1 paralle 96.9 0.011 2.4E-07 50.5 10.2 70 34-114 77-154 (314)
26 PF12541 DUF3737: Protein of u 96.8 0.009 2E-07 50.2 8.6 70 2-76 99-184 (277)
27 COG5434 PGU1 Endopygalactoruna 96.4 0.062 1.3E-06 49.5 11.8 116 17-146 248-369 (542)
28 smart00656 Amb_all Amb_all dom 96.2 0.021 4.5E-07 45.5 7.2 76 35-114 32-117 (190)
29 PF12541 DUF3737: Protein of u 96.1 0.023 5E-07 47.9 7.2 101 40-162 16-121 (277)
30 PF05048 NosD: Periplasmic cop 95.9 0.094 2E-06 42.2 9.8 52 32-86 55-106 (236)
31 PF00544 Pec_lyase_C: Pectate 95.6 0.057 1.2E-06 43.3 7.4 70 35-114 37-131 (200)
32 PF05048 NosD: Periplasmic cop 94.8 1.1 2.4E-05 35.9 12.7 29 35-63 80-108 (236)
33 TIGR03808 RR_plus_rpt_1 twin-a 94.8 0.18 3.9E-06 45.5 8.4 44 32-77 237-281 (455)
34 COG3866 PelB Pectate lyase [Ca 93.9 0.27 5.8E-06 42.5 7.3 79 33-114 115-201 (345)
35 TIGR03808 RR_plus_rpt_1 twin-a 90.0 9.4 0.0002 34.7 12.7 61 2-62 145-209 (455)
36 PF03718 Glyco_hydro_49: Glyco 80.8 22 0.00047 33.2 10.4 103 17-146 330-441 (582)
37 TIGR03804 para_beta_helix para 80.5 3.6 7.7E-05 24.4 3.8 35 36-71 1-35 (44)
38 PF01696 Adeno_E1B_55K: Adenov 75.8 17 0.00036 32.4 7.9 52 59-112 67-134 (386)
39 PRK10123 wcaM putative colanic 71.8 5.2 0.00011 34.8 3.7 65 43-107 177-254 (464)
40 PLN02773 pectinesterase 65.4 91 0.002 27.0 10.3 61 44-112 152-213 (317)
41 PF03211 Pectate_lyase: Pectat 64.5 14 0.0003 30.3 4.7 38 32-71 73-111 (215)
42 PF07602 DUF1565: Protein of u 60.3 55 0.0012 27.3 7.6 84 20-114 101-191 (246)
43 smart00710 PbH1 Parallel beta- 59.4 13 0.00028 18.4 2.5 19 44-62 3-22 (26)
44 PLN02480 Probable pectinestera 54.7 1.1E+02 0.0024 26.8 8.9 14 98-111 239-252 (343)
45 PF07602 DUF1565: Protein of u 45.4 1.8E+02 0.0039 24.3 11.1 74 35-114 89-166 (246)
46 PF01696 Adeno_E1B_55K: Adenov 41.3 2.6E+02 0.0057 25.0 9.7 21 125-148 252-272 (386)
47 PLN02480 Probable pectinestera 39.9 77 0.0017 27.7 5.6 40 36-77 126-175 (343)
48 COG3420 NosD Nitrous oxidase a 38.8 1.5E+02 0.0033 26.3 7.2 33 32-64 148-180 (408)
49 PLN02682 pectinesterase family 36.2 3.1E+02 0.0067 24.3 9.9 35 43-78 163-207 (369)
50 PLN02682 pectinesterase family 35.7 3.2E+02 0.0068 24.3 8.8 14 98-111 267-280 (369)
51 PLN02217 probable pectinestera 34.1 2.8E+02 0.0062 26.6 8.7 33 44-77 343-375 (670)
52 PLN02708 Probable pectinestera 30.0 2.7E+02 0.0058 26.0 7.7 34 43-77 330-368 (553)
53 PLN02432 putative pectinestera 29.4 3.6E+02 0.0078 23.0 10.0 60 44-110 143-204 (293)
54 PRK10123 wcaM putative colanic 27.4 3.5E+02 0.0076 23.8 7.4 43 65-112 300-345 (464)
55 PLN02506 putative pectinestera 25.9 5.5E+02 0.012 23.9 9.1 79 2-109 320-398 (537)
56 PLN02698 Probable pectinestera 25.0 5.3E+02 0.011 23.7 8.6 62 44-112 320-386 (497)
57 PLN02634 probable pectinestera 24.7 4.9E+02 0.011 23.0 8.5 14 98-111 253-266 (359)
58 PLN02497 probable pectinestera 23.8 4.9E+02 0.011 22.7 9.3 78 2-109 116-201 (331)
59 PLN02745 Putative pectinestera 22.8 4.5E+02 0.0098 24.8 7.9 34 44-78 373-411 (596)
60 PLN02708 Probable pectinestera 22.3 6.5E+02 0.014 23.5 13.0 33 43-78 358-390 (553)
61 PLN02197 pectinesterase 21.7 6.9E+02 0.015 23.6 9.1 79 2-109 365-443 (588)
62 PLN02301 pectinesterase/pectin 21.6 6.7E+02 0.015 23.4 9.0 79 2-109 324-402 (548)
63 PLN02416 probable pectinestera 21.1 6.8E+02 0.015 23.3 8.8 79 2-109 318-396 (541)
64 PLN02698 Probable pectinestera 21.0 2E+02 0.0043 26.5 5.1 14 134-147 373-386 (497)
65 PLN02995 Probable pectinestera 20.4 2.1E+02 0.0046 26.6 5.1 34 44-78 318-351 (539)
66 PLN02671 pectinesterase 20.2 6.1E+02 0.013 22.4 8.5 77 45-128 209-291 (359)
No 1
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1.5e-43 Score=312.82 Aligned_cols=162 Identities=38% Similarity=0.631 Sum_probs=146.8
Q ss_pred CcEEEEeeEEeCCCCceEEEeE--------EEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEe
Q 047599 1 MHGSITYITSRDSKNFHFNTFK--------INIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISS 72 (165)
Q Consensus 1 ~nv~i~gitl~nsp~w~i~i~~--------v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~ 72 (165)
.|+.|+||+++|||+||+++.+ |+|.+|..+|||||||+++|+||+|+||+|++||||||||++++||+|+
T Consensus 147 ~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~- 225 (456)
T PLN03003 147 NNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHIS- 225 (456)
T ss_pred CCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEE-
Confidence 3789999999999999998764 9999998899999999999999999999999999999999999999999
Q ss_pred CeEEcCCCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCCCC--------------------------------------
Q 047599 73 NVKIWPSNVESISIRSLGGTPNEKEAREITVQNCNLKGTSNG-------------------------------------- 114 (165)
Q Consensus 73 n~~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~~g-------------------------------------- 114 (165)
|++|.+| |||+|||||+++..+.|+||+|+||+|.++.+|
T Consensus 226 n~~c~~G--HGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~ 303 (456)
T PLN03003 226 GIDCGPG--HGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNG 303 (456)
T ss_pred eeEEECC--CCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCC
Confidence 9999999 999999999988778999999999999999887
Q ss_pred -------------------------cccCccceEEEEcCCCCCeEeEEEEeEEEEecCCCCCCcCceeeEeeEecC
Q 047599 115 -------------------------GTSSTKVAVDLQCSKVKPRDKIELRDIDMACHGAGGGQAAVSNYSNVHGVA 165 (165)
Q Consensus 115 -------------------------Gt~~~~~a~~l~c~~~~pc~~i~~~dv~l~~~~~~~~~~~~~~C~nv~g~~ 165 (165)
||+..+.++.|.|++..||+||+|+||+|+...++.+..+.+.|+||+|.+
T Consensus 304 ~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~ 379 (456)
T PLN03003 304 GDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGAS 379 (456)
T ss_pred CCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEecccccc
Confidence 344567899999999999999999999999874221225789999999973
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.6e-42 Score=306.26 Aligned_cols=158 Identities=34% Similarity=0.495 Sum_probs=145.4
Q ss_pred CcEEEEeeEEeCCCCceEEEeE--------EEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEe
Q 047599 1 MHGSITYITSRDSKNFHFNTFK--------INIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISS 72 (165)
Q Consensus 1 ~nv~i~gitl~nsp~w~i~i~~--------v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~ 72 (165)
.|+.|+||+|+|||+||+++.+ |+|.+|..+|||||||+++|+||+|+||+|++||||||||++++||+|+
T Consensus 186 ~nv~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~- 264 (443)
T PLN02793 186 KDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIR- 264 (443)
T ss_pred ccEEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEE-
Confidence 3789999999999999998764 9999999899999999999999999999999999999999999999999
Q ss_pred CeEEcCCCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCCCC--------------------------------------
Q 047599 73 NVKIWPSNVESISIRSLGGTPNEKEAREITVQNCNLKGTSNG-------------------------------------- 114 (165)
Q Consensus 73 n~~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~~g-------------------------------------- 114 (165)
|++|.+| |||+|||||++.+.++|+||+|+||+|.++++|
T Consensus 265 n~~c~~G--hGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~ 342 (443)
T PLN02793 265 NIACGPG--HGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCD 342 (443)
T ss_pred EeEEeCC--ccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecC
Confidence 9999999 999999999998888999999999999999887
Q ss_pred -----------------------cccCccceEEEEcCCCCCeEeEEEEeEEEEecCCCCCCcCceeeEeeEec
Q 047599 115 -----------------------GTSSTKVAVDLQCSKVKPRDKIELRDIDMACHGAGGGQAAVSNYSNVHGV 164 (165)
Q Consensus 115 -----------------------Gt~~~~~a~~l~c~~~~pc~~i~~~dv~l~~~~~~~~~~~~~~C~nv~g~ 164 (165)
||+..+.+++|.|+++.||+||+|+||+|+..+++ ...+.|+|++|.
T Consensus 343 ~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~---~~~~~C~n~~g~ 412 (443)
T PLN02793 343 SRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD---FTESFCWEAYGS 412 (443)
T ss_pred CCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC---CCCcEEEccEEe
Confidence 23334678999999999999999999999988764 557999999996
No 3
>PLN02155 polygalacturonase
Probab=100.00 E-value=2.2e-42 Score=301.56 Aligned_cols=157 Identities=34% Similarity=0.522 Sum_probs=144.3
Q ss_pred cEEEEeeEEeCCCCceEEEeE--------EEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEeC
Q 047599 2 HGSITYITSRDSKNFHFNTFK--------INIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISSN 73 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i~i~~--------v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n 73 (165)
|+.|+||+|+|||+||+++.+ |+|.+|.++|||||||+++|+||+|+||+|++||||||||++++||+|+ |
T Consensus 155 nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~-n 233 (394)
T PLN02155 155 DVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLIT-K 233 (394)
T ss_pred eEEEECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEE-E
Confidence 789999999999999998764 8999999899999999999999999999999999999999999999999 9
Q ss_pred eEEcCCCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCCCC---------------------------------------
Q 047599 74 VKIWPSNVESISIRSLGGTPNEKEAREITVQNCNLKGTSNG--------------------------------------- 114 (165)
Q Consensus 74 ~~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~~g--------------------------------------- 114 (165)
++|.+| |||+|||||++.+.++|+||+|+||+|.++.+|
T Consensus 234 ~~c~~G--hGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~ 311 (394)
T PLN02155 234 LACGPG--HGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCP 311 (394)
T ss_pred EEEECC--ceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccC
Confidence 999999 999999999887788999999999999998766
Q ss_pred -----------------------cccCccceEEEEcCCCCCeEeEEEEeEEEEecCCCCCCcCceeeEeeEec
Q 047599 115 -----------------------GTSSTKVAVDLQCSKVKPRDKIELRDIDMACHGAGGGQAAVSNYSNVHGV 164 (165)
Q Consensus 115 -----------------------Gt~~~~~a~~l~c~~~~pc~~i~~~dv~l~~~~~~~~~~~~~~C~nv~g~ 164 (165)
||...+.++.|.|++..||+||+|+||+|...+++ ...++|+||+|.
T Consensus 312 ~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~---~~~~~C~n~~G~ 381 (394)
T PLN02155 312 THEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGT---PATSFCFNAVGK 381 (394)
T ss_pred CCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCC---ccCcEEeccEeE
Confidence 23344678999999999999999999999998654 568999999986
No 4
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=8.5e-42 Score=300.75 Aligned_cols=153 Identities=37% Similarity=0.598 Sum_probs=140.1
Q ss_pred CcEEEEeeEEeCCCCceEEEeE--------EEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEe
Q 047599 1 MHGSITYITSRDSKNFHFNTFK--------INIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISS 72 (165)
Q Consensus 1 ~nv~i~gitl~nsp~w~i~i~~--------v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~ 72 (165)
.|+.|+||+|+|||+||+++.+ |+|.+|.++|||||||+++|+||+|+||+|++||||||||++++||+|+
T Consensus 201 ~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~- 279 (431)
T PLN02218 201 KSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQIN- 279 (431)
T ss_pred ccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEE-
Confidence 3789999999999999998854 8999999999999999999999999999999999999999999999999
Q ss_pred CeEEcCCCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCCCC--------------------------------------
Q 047599 73 NVKIWPSNVESISIRSLGGTPNEKEAREITVQNCNLKGTSNG-------------------------------------- 114 (165)
Q Consensus 73 n~~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~~g-------------------------------------- 114 (165)
||+|.+| |||+|||||++...++|+||+|+||+|.++.+|
T Consensus 280 n~~c~~G--HGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~ 357 (431)
T PLN02218 280 DITCGPG--HGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCD 357 (431)
T ss_pred eEEEECC--CCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccC
Confidence 9999999 999999999887778999999999999999888
Q ss_pred ----------------------cccCccceEEEEcCCCCCeEeEEEEeEEEEecCCCCCCcCceeeEeeEec
Q 047599 115 ----------------------GTSSTKVAVDLQCSKVKPRDKIELRDIDMACHGAGGGQAAVSNYSNVHGV 164 (165)
Q Consensus 115 ----------------------Gt~~~~~a~~l~c~~~~pc~~i~~~dv~l~~~~~~~~~~~~~~C~nv~g~ 164 (165)
||++.+.|+.|.|++..||+||+|+||+|... ...|+||+|+
T Consensus 358 ~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~--------~~~c~n~~~~ 421 (431)
T PLN02218 358 KSKCTSQQSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG--------KATCTNANVV 421 (431)
T ss_pred CCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC--------eeeEEEeeEE
Confidence 23344678999999999999999999999742 2679999986
No 5
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.7e-41 Score=296.92 Aligned_cols=159 Identities=40% Similarity=0.653 Sum_probs=144.2
Q ss_pred cEEEEeeEEeCCCCceEEEeE--------EEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEeC
Q 047599 2 HGSITYITSRDSKNFHFNTFK--------INIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISSN 73 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i~i~~--------v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n 73 (165)
|+.|+||+|+|||+||+++.. |+|.+|.++|||||||+++|++|+|+||+|++||||||+|++++||+|+ |
T Consensus 165 nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~-n 243 (404)
T PLN02188 165 NTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTIT-R 243 (404)
T ss_pred eEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEE-E
Confidence 789999999999999998754 8999999899999999999999999999999999999999999999999 9
Q ss_pred eEEcCCCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCCCC---------------------------------------
Q 047599 74 VKIWPSNVESISIRSLGGTPNEKEAREITVQNCNLKGTSNG--------------------------------------- 114 (165)
Q Consensus 74 ~~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~~g--------------------------------------- 114 (165)
+.|.++ |||+|||+|++.+.++|+||+|+||+|.++.+|
T Consensus 244 ~~c~~g--hGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~ 321 (404)
T PLN02188 244 IRCGPG--HGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYC 321 (404)
T ss_pred EEEcCC--CcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEcccc
Confidence 999999 999999999988889999999999999999866
Q ss_pred ------------------------cccCccceEEEEcCCCCCeEeEEEEeEEEEecCCCCCCcCceeeEeeEecC
Q 047599 115 ------------------------GTSSTKVAVDLQCSKVKPRDKIELRDIDMACHGAGGGQAAVSNYSNVHGVA 165 (165)
Q Consensus 115 ------------------------Gt~~~~~a~~l~c~~~~pc~~i~~~dv~l~~~~~~~~~~~~~~C~nv~g~~ 165 (165)
||...+.++.|.|+++.||+||+|+||+|...++. + ...+.|+||+|.+
T Consensus 322 ~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~-~-~~~~~C~nv~g~~ 394 (404)
T PLN02188 322 PFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGE-G-GTSSSCENVRAKY 394 (404)
T ss_pred CCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCC-C-CcCceeEcceeEE
Confidence 22334668999999999999999999999987543 1 4579999999864
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=1.8e-41 Score=296.87 Aligned_cols=158 Identities=38% Similarity=0.608 Sum_probs=146.1
Q ss_pred CcEEEEeeEEeCCCCceEEEeE--------EEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEe
Q 047599 1 MHGSITYITSRDSKNFHFNTFK--------INIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISS 72 (165)
Q Consensus 1 ~nv~i~gitl~nsp~w~i~i~~--------v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~ 72 (165)
.|+.|+||+|+|||+||+++.+ |+|.+|..+|||||||+++|++|+|+||+|++||||||||++++++.|+
T Consensus 166 ~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~- 244 (409)
T PLN03010 166 DNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINIT- 244 (409)
T ss_pred cCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEE-
Confidence 3799999999999999998764 8999998899999999999999999999999999999999999999999
Q ss_pred CeEEcCCCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCCCC--------------------------------------
Q 047599 73 NVKIWPSNVESISIRSLGGTPNEKEAREITVQNCNLKGTSNG-------------------------------------- 114 (165)
Q Consensus 73 n~~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~~g-------------------------------------- 114 (165)
++.|.++ |||+|||||+++....|+||+|+||+|.++.+|
T Consensus 245 ~~~C~~g--HGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~ 322 (409)
T PLN03010 245 QINCGPG--HGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYID 322 (409)
T ss_pred EEEeECc--CCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccC
Confidence 9999999 999999999987778899999999999999887
Q ss_pred -----------------------cccCccceEEEEcCCCCCeEeEEEEeEEEEecCCCCCCcCceeeEeeEec
Q 047599 115 -----------------------GTSSTKVAVDLQCSKVKPRDKIELRDIDMACHGAGGGQAAVSNYSNVHGV 164 (165)
Q Consensus 115 -----------------------Gt~~~~~a~~l~c~~~~pc~~i~~~dv~l~~~~~~~~~~~~~~C~nv~g~ 164 (165)
||+..+.+++|.|++..||+||+|+||+|+..+++ ...+.|+|++|.
T Consensus 323 ~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~---~~~~~C~nv~g~ 392 (409)
T PLN03010 323 KGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGE---KPKVECQNVEGE 392 (409)
T ss_pred CCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCC---ccceEeeCcccc
Confidence 44456789999999999999999999999988764 568999999985
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=9.2e-38 Score=266.34 Aligned_cols=154 Identities=34% Similarity=0.553 Sum_probs=132.4
Q ss_pred cEEEEeeEEeCCCCceEEEeE--------EEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEeC
Q 047599 2 HGSITYITSRDSKNFHFNTFK--------INIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISSN 73 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i~i~~--------v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n 73 (165)
|+.|+||+|+|||+|++++.+ ++|.++...|||||||+++|+||+|+||+|++||||||+|+++.||+|+ |
T Consensus 102 ~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~~~ni~v~-n 180 (326)
T PF00295_consen 102 NVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSGSGNILVE-N 180 (326)
T ss_dssp EEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSEECEEEEE-S
T ss_pred ceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCcccccccccceEEE-e
Confidence 689999999999999998863 8899988889999999999999999999999999999999999999999 9
Q ss_pred eEEcCCCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCCCC---------------------------------------
Q 047599 74 VKIWPSNVESISIRSLGGTPNEKEAREITVQNCNLKGTSNG--------------------------------------- 114 (165)
Q Consensus 74 ~~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~~g--------------------------------------- 114 (165)
|+|+++ ||++||||+..+....|+||+|+||+|.++.+|
T Consensus 181 ~~~~~g--hGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~ 258 (326)
T PF00295_consen 181 CTCSGG--HGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDG 258 (326)
T ss_dssp EEEESS--SEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTT
T ss_pred EEEecc--ccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEeccccc
Confidence 999999 999999998766556799999999999999877
Q ss_pred ---------------------cccCccceEEEEcCCCCCeEeEEEEeEEEEecCCCCCCcCceeeEeeEec
Q 047599 115 ---------------------GTSSTKVAVDLQCSKVKPRDKIELRDIDMACHGAGGGQAAVSNYSNVHGV 164 (165)
Q Consensus 115 ---------------------Gt~~~~~a~~l~c~~~~pc~~i~~~dv~l~~~~~~~~~~~~~~C~nv~g~ 164 (165)
|+.....+++|.|++..||+||+|+||+|+. + ...+.|.|++..
T Consensus 259 ~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~-g-----~~~~~c~nv~~~ 323 (326)
T PF00295_consen 259 GPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG-G-----KKPAQCKNVPSG 323 (326)
T ss_dssp EESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES-S-----BSESEEBSCCTT
T ss_pred cccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc-C-----CcCeEEECCCCC
Confidence 1222246899999999999999999999998 3 356999998753
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=9.3e-25 Score=196.33 Aligned_cols=131 Identities=21% Similarity=0.321 Sum_probs=111.2
Q ss_pred cEEEEeeEEeCCCCceEEEeE--------EEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCC---------
Q 047599 2 HGSITYITSRDSKNFHFNTFK--------INIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPG--------- 64 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i~i~~--------v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~--------- 64 (165)
||+++|+++.|||.|++|+.. ++|.++... ||||||+.+|+||+|++|+|++|||||++|++
T Consensus 248 NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~ 326 (542)
T COG5434 248 NVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGY 326 (542)
T ss_pred eEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceEEeecccCCcccccc
Confidence 799999999999999998764 888888765 99999999999999999999999999999997
Q ss_pred --CeeEEEEeCeEEcCCCcce-EEEeecCCCCCCCCeeeEEEEeeEEeCCCCCcccCccceEEEEcCCCCCeEeEEEEeE
Q 047599 65 --SQNVNISSNVKIWPSNVES-ISIRSLGGTPNEKEAREITVQNCNLKGTSNGGTSSTKVAVDLQCSKVKPRDKIELRDI 141 (165)
Q Consensus 65 --s~nI~i~~n~~~~~g~~hG-isiGS~g~~~~~~~v~nV~v~n~~~~~t~~gGt~~~~~a~~l~c~~~~pc~~i~~~dv 141 (165)
+++|+|+ +|++..| || +++||| +.++|+||++|||.|.++++|- .++=.=..+...+||+|+++
T Consensus 327 ~~~~~i~i~-~c~~~~g--hG~~v~Gse----~~ggv~ni~ved~~~~~~d~GL------Rikt~~~~gG~v~nI~~~~~ 393 (542)
T COG5434 327 GPSRNIVIR-NCYFSSG--HGGLVLGSE----MGGGVQNITVEDCVMDNTDRGL------RIKTNDGRGGGVRNIVFEDN 393 (542)
T ss_pred cccccEEEe-cceeccc--ccceEeeee----cCCceeEEEEEeeeeccCccee------eeeeecccceeEEEEEEecc
Confidence 5899999 9999999 98 999999 8999999999999999988771 00000011246778888887
Q ss_pred EEEec
Q 047599 142 DMACH 146 (165)
Q Consensus 142 ~l~~~ 146 (165)
.+...
T Consensus 394 ~~~nv 398 (542)
T COG5434 394 KMRNV 398 (542)
T ss_pred cccCc
Confidence 77655
No 9
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.21 E-value=1.5e-10 Score=104.10 Aligned_cols=133 Identities=20% Similarity=0.193 Sum_probs=74.9
Q ss_pred cEEEEeeEEeCCCCceEEEeE-------EEEEc-----CCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEE
Q 047599 2 HGSITYITSRDSKNFHFNTFK-------INIQA-----PENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVN 69 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i~i~~-------v~I~~-----~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~ 69 (165)
++.++|+||.+||+|.+.+.+ .+|.+ .. -.|||||.+.. +=+|+|||+.+.||+|-+- -+++.
T Consensus 330 ~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW-~~qtDGi~ly~--nS~i~dcF~h~nDD~iKlY--hS~v~ 404 (582)
T PF03718_consen 330 TLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAW-YFQTDGIELYP--NSTIRDCFIHVNDDAIKLY--HSNVS 404 (582)
T ss_dssp EEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT----B--T--T-EEEEEEEEESS-SEE----STTEE
T ss_pred eEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeE-EeccCCccccC--CCeeeeeEEEecCchhhee--ecCcc
Confidence 578999999999999998874 34443 22 27999999984 7788999999999999444 46999
Q ss_pred EEeCeEEcCCCcce---EEEeecCCCCCCCCeeeEEEEeeEEeCCCCCcccCccceEEEEcCCCC-------------Ce
Q 047599 70 ISSNVKIWPSNVES---ISIRSLGGTPNEKEAREITVQNCNLKGTSNGGTSSTKVAVDLQCSKVK-------------PR 133 (165)
Q Consensus 70 i~~n~~~~~g~~hG---isiGS~g~~~~~~~v~nV~v~n~~~~~t~~gGt~~~~~a~~l~c~~~~-------------pc 133 (165)
|+ ++++|.- |. +.+|-. ...++||.|+|+.+..+..=--....+...|.+++.. .+
T Consensus 405 v~-~~ViWk~--~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti 476 (582)
T PF03718_consen 405 VS-NTVIWKN--ENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTI 476 (582)
T ss_dssp EE-EEEEEE---SSS-SEE--CS--------EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEE
T ss_pred ee-eeEEEec--CCCCeEEeecc-----ccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccce
Confidence 99 9999885 32 555533 4569999999999998742211111122233333222 24
Q ss_pred EeEEEEeEEEEecC
Q 047599 134 DKIELRDIDMACHG 147 (165)
Q Consensus 134 ~~i~~~dv~l~~~~ 147 (165)
++++|+||..+...
T Consensus 477 ~~~~~~nv~~EG~~ 490 (582)
T PF03718_consen 477 RNMTFSNVRCEGMC 490 (582)
T ss_dssp EEEEEEEEEEECCE
T ss_pred eeEEEEeEEEeccc
Confidence 67788888776644
No 10
>smart00656 Amb_all Amb_all domain.
Probab=98.17 E-value=4.3e-05 Score=60.92 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=76.2
Q ss_pred eeEEeCCCCceEEEeEEEEEcCCC--CCCCCeEEecceecEEEEeeEEecC----------CceEEecCCCeeEEEEeCe
Q 047599 7 YITSRDSKNFHFNTFKINIQAPEN--SPHTDGIHIANSNNIQILNSEISTG----------DDCASMDPGSQNVNISSNV 74 (165)
Q Consensus 7 gitl~nsp~w~i~i~~v~I~~~~~--~~NtDGidi~~s~nV~I~n~~i~~g----------DDcIaiks~s~nI~i~~n~ 74 (165)
+|++.+ .-++.|++|+|+.+.. ..+.|+|.+.++++|+|+.|.+..+ |.++.+|.++.+|+|+ +|
T Consensus 33 gl~i~~--~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs-~~ 109 (190)
T smart00656 33 GLTIKS--VSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTIS-NN 109 (190)
T ss_pred EEEEEe--cceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEE-Cc
Confidence 345554 3366777788887543 2578999999999999999999997 7788999999999999 99
Q ss_pred EEcCCCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCC
Q 047599 75 KIWPSNVESISIRSLGGTPNEKEAREITVQNCNLKGTS 112 (165)
Q Consensus 75 ~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~ 112 (165)
+|.... -|.-+|+--.. +.....+|++.++.|.++.
T Consensus 110 ~f~~h~-~~~liG~~d~~-~~~~~~~vT~h~N~~~~~~ 145 (190)
T smart00656 110 YFHNHW-KVMLLGHSDSD-TDDGKMRVTIAHNYFGNLR 145 (190)
T ss_pred eEecCC-EEEEEccCCCc-cccccceEEEECcEEcCcc
Confidence 996431 46778775211 2233668999999998754
No 11
>PLN02793 Probable polygalacturonase
Probab=98.11 E-value=7.2e-05 Score=66.93 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=49.8
Q ss_pred eecEEEEeeEEecCCceEEecCC------CeeEEEEeCeEEcC-CCcceEEEeec----CCC----CCCCCeeeEEEEee
Q 047599 42 SNNIQILNSEISTGDDCASMDPG------SQNVNISSNVKIWP-SNVESISIRSL----GGT----PNEKEAREITVQNC 106 (165)
Q Consensus 42 s~nV~I~n~~i~~gDDcIaiks~------s~nI~i~~n~~~~~-g~~hGisiGS~----g~~----~~~~~v~nV~v~n~ 106 (165)
-+||+|+||++..-+.++.||+. -+||+++ |.++.. . ++|.|-.. +.. .....|+||+|+|+
T Consensus 288 V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~-ni~m~nv~--~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI 364 (443)
T PLN02793 288 VRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQ-NIFMENVS--NPIIIDQYYCDSRKPCANQTSAVKVENISFVHI 364 (443)
T ss_pred EEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEE-eEEEecCC--ceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEE
Confidence 57899999999999999999962 5899999 988866 5 77888652 100 11135889999988
Q ss_pred EEeCCC
Q 047599 107 NLKGTS 112 (165)
Q Consensus 107 ~~~~t~ 112 (165)
+-....
T Consensus 365 ~Gt~~~ 370 (443)
T PLN02793 365 KGTSAT 370 (443)
T ss_pred EEEEcc
Confidence 877653
No 12
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.99 E-value=0.00017 Score=63.84 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=42.8
Q ss_pred eecEEEEeeEEecCCceEEecC-----C---CeeEEEEeCeEEcCCCcceEEEeec----CC----CCCCCCeeeEEEEe
Q 047599 42 SNNIQILNSEISTGDDCASMDP-----G---SQNVNISSNVKIWPSNVESISIRSL----GG----TPNEKEAREITVQN 105 (165)
Q Consensus 42 s~nV~I~n~~i~~gDDcIaiks-----~---s~nI~i~~n~~~~~g~~hGisiGS~----g~----~~~~~~v~nV~v~n 105 (165)
-+||+|+||.+..-+-.+.||+ + -+||+++ |+.+..-. .+|.|=.. +. ......|+||+|+|
T Consensus 266 V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~-ni~m~~v~-~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~n 343 (404)
T PLN02188 266 VTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFE-NIVMNNVT-NPIIIDQKYCPFYSCESKYPSGVTLSDIYFKN 343 (404)
T ss_pred EEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEE-eEEecCcc-ceEEEEccccCCCCCCcCCCCCcEEEeEEEEE
Confidence 4577777777777777777774 1 3677777 77775521 55665321 11 11124588999999
Q ss_pred eEEeCC
Q 047599 106 CNLKGT 111 (165)
Q Consensus 106 ~~~~~t 111 (165)
++-...
T Consensus 344 I~gt~~ 349 (404)
T PLN02188 344 IRGTSS 349 (404)
T ss_pred EEEEec
Confidence 887654
No 13
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.97 E-value=4.7e-05 Score=65.21 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=12.2
Q ss_pred cEEEEeeEEeCCCCc
Q 047599 2 HGSITYITSRDSKNF 16 (165)
Q Consensus 2 nv~i~gitl~nsp~w 16 (165)
|+.|++|++.+++.+
T Consensus 125 nv~i~~i~I~~~~~~ 139 (326)
T PF00295_consen 125 NVTISNITINNPANS 139 (326)
T ss_dssp EEEEESEEEEEGGGC
T ss_pred CeEEcceEEEecCCC
Confidence 688999999888764
No 14
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.89 E-value=0.00018 Score=61.51 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=58.8
Q ss_pred cEEEEeeEEeCCCCceEEEeE--------EEEEcCC---CCCCCCeEEecceecEEEEeeEEecCCc-eEEecCCCeeEE
Q 047599 2 HGSITYITSRDSKNFHFNTFK--------INIQAPE---NSPHTDGIHIANSNNIQILNSEISTGDD-CASMDPGSQNVN 69 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i~i~~--------v~I~~~~---~~~NtDGidi~~s~nV~I~n~~i~~gDD-cIaiks~s~nI~ 69 (165)
+++|+++++.+++.+.+.+.+ ++|.-.. .....+||.+..|++++|++++++...| .|-++. +++++
T Consensus 64 ~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~ 142 (314)
T TIGR03805 64 DVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIV 142 (314)
T ss_pred CeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeE
Confidence 789999999999998887654 4443211 1134689999999999999999988554 788774 55777
Q ss_pred EEeCeEEcCCCcceEEE
Q 047599 70 ISSNVKIWPSNVESISI 86 (165)
Q Consensus 70 i~~n~~~~~g~~hGisi 86 (165)
|+ +++++... .||-+
T Consensus 143 v~-nN~~~~n~-~GI~i 157 (314)
T TIGR03805 143 VR-NNVAEENV-AGIEI 157 (314)
T ss_pred EE-CCEEccCc-ceEEE
Confidence 77 77765431 34444
No 15
>PLN02218 polygalacturonase ADPG
Probab=97.88 E-value=0.00029 Score=62.91 Aligned_cols=66 Identities=11% Similarity=0.191 Sum_probs=33.5
Q ss_pred ecEEEEeeEEecCCceEEecCC------CeeEEEEeCeEEcC-CCcceEEEeec--C-----CCCCCCCeeeEEEEeeEE
Q 047599 43 NNIQILNSEISTGDDCASMDPG------SQNVNISSNVKIWP-SNVESISIRSL--G-----GTPNEKEAREITVQNCNL 108 (165)
Q Consensus 43 ~nV~I~n~~i~~gDDcIaiks~------s~nI~i~~n~~~~~-g~~hGisiGS~--g-----~~~~~~~v~nV~v~n~~~ 108 (165)
+||+|+||++...+-.+-||+. -+||+++ |.++.. . ++|.|=.. . .......|+||+|+|++-
T Consensus 304 ~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~-ni~m~~V~--~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~g 380 (431)
T PLN02218 304 SGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQ-NIQMENVK--NPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISG 380 (431)
T ss_pred EEEEEEccEEecCCcceEEeecCCCCeEEEEEEEE-eEEEEccc--ccEEEEeeccCCCCCCCCCCCeEEEEEEEEeEEE
Confidence 3555555555555556666642 3556666 555543 3 44444322 0 001112377777777776
Q ss_pred eCC
Q 047599 109 KGT 111 (165)
Q Consensus 109 ~~t 111 (165)
...
T Consensus 381 tsa 383 (431)
T PLN02218 381 TSA 383 (431)
T ss_pred Eec
Confidence 543
No 16
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.85 E-value=0.00038 Score=62.59 Aligned_cols=13 Identities=8% Similarity=0.054 Sum_probs=11.0
Q ss_pred cEEEEeeEEeCCC
Q 047599 2 HGSITYITSRDSK 14 (165)
Q Consensus 2 nv~i~gitl~nsp 14 (165)
|+.|++|++.++.
T Consensus 171 nV~i~~l~I~ap~ 183 (456)
T PLN03003 171 YVTISSLRINAPE 183 (456)
T ss_pred cEEEEEEEEeCCC
Confidence 7899999999864
No 17
>PLN02155 polygalacturonase
Probab=97.74 E-value=0.00066 Score=60.00 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=41.9
Q ss_pred ecEEEEeeEEecCCceEEecCC-------CeeEEEEeCeEEcCCCcceEEEeec-CC-CC------CCCCeeeEEEEeeE
Q 047599 43 NNIQILNSEISTGDDCASMDPG-------SQNVNISSNVKIWPSNVESISIRSL-GG-TP------NEKEAREITVQNCN 107 (165)
Q Consensus 43 ~nV~I~n~~i~~gDDcIaiks~-------s~nI~i~~n~~~~~g~~hGisiGS~-g~-~~------~~~~v~nV~v~n~~ 107 (165)
+||+|+||.+...+-.+-||+. -+||+++ |.++..-. .+|-|-.. .. .. ....|+||+|+|++
T Consensus 257 ~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~-ni~m~~v~-~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~ 334 (394)
T PLN02155 257 ENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQ-DLVMKNVE-NPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQ 334 (394)
T ss_pred EEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEE-eEEEcCcc-ccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeE
Confidence 6777777777777777777751 3677777 77775521 55665321 00 00 01257888888888
Q ss_pred EeCCC
Q 047599 108 LKGTS 112 (165)
Q Consensus 108 ~~~t~ 112 (165)
-....
T Consensus 335 gt~~~ 339 (394)
T PLN02155 335 GTSAT 339 (394)
T ss_pred EEecC
Confidence 77664
No 18
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.74 E-value=0.00015 Score=58.27 Aligned_cols=96 Identities=24% Similarity=0.272 Sum_probs=66.6
Q ss_pred CCceEEEeEEEEEcC-----------CCCCCCCeEEecceecEEEEeeEEecC---------CceEEecCCCeeEEEEeC
Q 047599 14 KNFHFNTFKINIQAP-----------ENSPHTDGIHIANSNNIQILNSEISTG---------DDCASMDPGSQNVNISSN 73 (165)
Q Consensus 14 p~w~i~i~~v~I~~~-----------~~~~NtDGidi~~s~nV~I~n~~i~~g---------DDcIaiks~s~nI~i~~n 73 (165)
...++.|++|++... ......|+|.+..+++|+|+.|.+..+ |..+.+|.++.+|+|+ +
T Consensus 44 ~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS-~ 122 (200)
T PF00544_consen 44 GASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTIS-N 122 (200)
T ss_dssp SCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEE-S
T ss_pred CCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEE-c
Confidence 345666666777651 223689999999999999999999776 7789999999999999 9
Q ss_pred eEEcCCCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCC
Q 047599 74 VKIWPSNVESISIRSLGGTPNEKEAREITVQNCNLKGTS 112 (165)
Q Consensus 74 ~~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~ 112 (165)
|.|.... .+.-+|+.-....... .+|++-.+.|.++.
T Consensus 123 n~f~~~~-k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~~ 159 (200)
T PF00544_consen 123 NIFDNHN-KTMLIGSSDSNSTDRG-LRVTFHHNYFANTN 159 (200)
T ss_dssp -EEEEEE-ETCEESSCTTCGGGTT-EEEEEES-EEEEEE
T ss_pred hhccccc-cccccCCCCCccccCC-ceEEEEeEEECchh
Confidence 9995421 4466777533322334 99999999998765
No 19
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.57 E-value=0.0012 Score=48.58 Aligned_cols=101 Identities=22% Similarity=0.247 Sum_probs=62.8
Q ss_pred cEEEEeeEEeCCCCceEEEeE---EEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEeCeEEcC
Q 047599 2 HGSITYITSRDSKNFHFNTFK---INIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISSNVKIWP 78 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i~i~~---v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~ 78 (165)
++.|++.+|.+.+.+.+++.+ +.|.+-.-.....|+.+....++.|++|.+....-.+.+. .+..++|+ +|.+..
T Consensus 10 ~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~~~~~i~-~~~i~~ 87 (158)
T PF13229_consen 10 NVTIRNCTISNNGGDGIHVSGSSNITIENCTISNGGYGIYVSGGSNVTISNNTISDNGSGIYVS-GSSNITIE-NNRIEN 87 (158)
T ss_dssp C-EEESEEEESSSSECEEE-SSCESEEES-EEESSTTSEEEECCES-EEES-EEES-SEEEECC-S-CS-EEE-S-EEEC
T ss_pred CeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEECCCcEEEEecCCCeEEECeEEEEccceEEEE-ecCCceec-CcEEEc
Confidence 478899999999888888875 4555322112678888888889999999998877555555 56788899 888866
Q ss_pred CCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCC
Q 047599 79 SNVESISIRSLGGTPNEKEAREITVQNCNLKGTS 112 (165)
Q Consensus 79 g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~ 112 (165)
....||.+.. .-+++++++++|.+..
T Consensus 88 ~~~~gi~~~~--------~~~~~~i~~n~~~~~~ 113 (158)
T PF13229_consen 88 NGDYGIYISN--------SSSNVTIENNTIHNNG 113 (158)
T ss_dssp SSS-SCE-TC--------EECS-EEES-EEECCT
T ss_pred CCCccEEEec--------cCCCEEEEeEEEEeCc
Confidence 4214666532 2456888888888766
No 20
>PLN03010 polygalacturonase
Probab=97.50 E-value=0.0028 Score=56.31 Aligned_cols=69 Identities=7% Similarity=0.128 Sum_probs=48.0
Q ss_pred eecEEEEeeEEecCCceEEecCC------CeeEEEEeCeEEcCCCcceEEEeecCC--------CCCCCCeeeEEEEeeE
Q 047599 42 SNNIQILNSEISTGDDCASMDPG------SQNVNISSNVKIWPSNVESISIRSLGG--------TPNEKEAREITVQNCN 107 (165)
Q Consensus 42 s~nV~I~n~~i~~gDDcIaiks~------s~nI~i~~n~~~~~g~~hGisiGS~g~--------~~~~~~v~nV~v~n~~ 107 (165)
-+||+|+||.+...+-.+.||+. -+||+++ |.++..-. .+|.|=..=. ....-.|+||+|+|++
T Consensus 268 V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~-nI~m~~v~-~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~ 345 (409)
T PLN03010 268 VSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFE-NITLINTK-NPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFR 345 (409)
T ss_pred eEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEE-eEEEecCC-ccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeE
Confidence 37899999999999999999963 4889999 99886632 6777744310 1111257888888877
Q ss_pred EeCCC
Q 047599 108 LKGTS 112 (165)
Q Consensus 108 ~~~t~ 112 (165)
=..+.
T Consensus 346 GT~~~ 350 (409)
T PLN03010 346 GTTSN 350 (409)
T ss_pred EEeCC
Confidence 55433
No 21
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.0048 Score=52.90 Aligned_cols=96 Identities=18% Similarity=0.212 Sum_probs=73.0
Q ss_pred CceEEEeEEEEEcCC-CCCCCCeEEe-cceecEEEEeeEEec---------CCceEEecCCCeeEEEEeCeEEcCCCcce
Q 047599 15 NFHFNTFKINIQAPE-NSPHTDGIHI-ANSNNIQILNSEIST---------GDDCASMDPGSQNVNISSNVKIWPSNVES 83 (165)
Q Consensus 15 ~w~i~i~~v~I~~~~-~~~NtDGidi-~~s~nV~I~n~~i~~---------gDDcIaiks~s~nI~i~~n~~~~~g~~hG 83 (165)
+-++.|++|+|.... ..|+-|+|.| ..++|++|++|++.. +|--+=||-++.+|+|. +++|.... -+
T Consensus 124 a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS-~n~fhdh~-Ks 201 (345)
T COG3866 124 AGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITIS-YNKFHDHD-KS 201 (345)
T ss_pred CCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEE-eeeeecCC-ee
Confidence 334555566666432 2366699999 889999999999987 67788999999999999 99996531 56
Q ss_pred EEEeecCCCCCCCCeeeEEEEeeEEeCCC
Q 047599 84 ISIRSLGGTPNEKEAREITVQNCNLKGTS 112 (165)
Q Consensus 84 isiGS~g~~~~~~~v~nV~v~n~~~~~t~ 112 (165)
+-+|+--......+-.+||+.++.|.+..
T Consensus 202 sl~G~sD~~~~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 202 SLLGSSDSSNYDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred eeeccCCcccccCCceeEEEecccccccc
Confidence 88887733223356789999999999875
No 22
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.28 E-value=0.018 Score=45.11 Aligned_cols=104 Identities=19% Similarity=0.335 Sum_probs=64.5
Q ss_pred EeEEEEEcCCCCCC--CCeEEecceecEEEEeeEEec-CCceEEecCC----------CeeEEEE--------eCeEEcC
Q 047599 20 TFKINIQAPENSPH--TDGIHIANSNNIQILNSEIST-GDDCASMDPG----------SQNVNIS--------SNVKIWP 78 (165)
Q Consensus 20 i~~v~I~~~~~~~N--tDGidi~~s~nV~I~n~~i~~-gDDcIaiks~----------s~nI~i~--------~n~~~~~ 78 (165)
+.++++..+...++ .+|+.+..+++++|+|+.+.. +.+++.+... .+++.++ .++.+..
T Consensus 96 i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
T PF12708_consen 96 IRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCIFNG 175 (225)
T ss_dssp EEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEEEES
T ss_pred EEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccceeeeeccceeEEEECCccccC
Confidence 77788887765443 589999999999999998876 5777777622 1134333 0444433
Q ss_pred CCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCCCCcccCccceEEEEcCCCCCeEeEEEEeEEEEec
Q 047599 79 SNVESISIRSLGGTPNEKEAREITVQNCNLKGTSNGGTSSTKVAVDLQCSKVKPRDKIELRDIDMACH 146 (165)
Q Consensus 79 g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~~gGt~~~~~a~~l~c~~~~pc~~i~~~dv~l~~~ 146 (165)
+. +|+..|+ ++++++||.+.+.. ..++.+.-... +.+++++++..
T Consensus 176 ~~-~g~~~~~----------~~~~i~n~~~~~~~-------~~gi~i~~~~~-----~~i~n~~i~~~ 220 (225)
T PF12708_consen 176 GD-NGIILGN----------NNITISNNTFEGNC-------GNGINIEGGSN-----IIISNNTIENC 220 (225)
T ss_dssp SS-CSEECEE----------EEEEEECEEEESSS-------SESEEEEECSE-----EEEEEEEEESS
T ss_pred CC-ceeEeec----------ceEEEEeEEECCcc-------ceeEEEECCeE-----EEEEeEEEECC
Confidence 21 4433222 79999999988633 35565655444 55565555443
No 23
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.21 E-value=0.0034 Score=46.15 Aligned_cols=93 Identities=26% Similarity=0.408 Sum_probs=40.9
Q ss_pred CCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEeCeEEcCCCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCC
Q 047599 33 HTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISSNVKIWPSNVESISIRSLGGTPNEKEAREITVQNCNLKGTS 112 (165)
Q Consensus 33 NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~ 112 (165)
..+||.+..+..++|++|.|..+...|.+... .++.++ ++++.... .|+.+ ..-.++++++|.+.+..
T Consensus 22 ~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~~-~~~~i~-~~~~~~~~-~~i~~---------~~~~~~~i~~~~i~~~~ 89 (158)
T PF13229_consen 22 GGDGIHVSGSSNITIENCTISNGGYGIYVSGG-SNVTIS-NNTISDNG-SGIYV---------SGSSNITIENNRIENNG 89 (158)
T ss_dssp SSECEEE-SSCESEEES-EEESSTTSEEEECC-ES-EEE-S-EEES-S-EEEEC---------CS-CS-EEES-EEECSS
T ss_pred CCeEEEEEcCCCeEEECeEEECCCcEEEEecC-CCeEEE-CeEEEEcc-ceEEE---------EecCCceecCcEEEcCC
Confidence 34555555555555555555554444444443 345555 55554430 12221 13344555555555543
Q ss_pred CCcccCccceEEEEcCCCCCeEeEEEEeEEEEecCC
Q 047599 113 NGGTSSTKVAVDLQCSKVKPRDKIELRDIDMACHGA 148 (165)
Q Consensus 113 ~gGt~~~~~a~~l~c~~~~pc~~i~~~dv~l~~~~~ 148 (165)
. .++.+.- +..+++|++-.+....+
T Consensus 90 ~-------~gi~~~~----~~~~~~i~~n~~~~~~~ 114 (158)
T PF13229_consen 90 D-------YGIYISN----SSSNVTIENNTIHNNGG 114 (158)
T ss_dssp S--------SCE-TC----EECS-EEES-EEECCTT
T ss_pred C-------ccEEEec----cCCCEEEEeEEEEeCcc
Confidence 1 2333321 46678888888887663
No 24
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.93 E-value=0.0051 Score=48.19 Aligned_cols=96 Identities=26% Similarity=0.294 Sum_probs=55.7
Q ss_pred cEEEEeeEEeCCCCceEEEeE---EEEEcCCCCCCCCeEEecc-eecEEEEeeEEecCCceEEecCCCeeEEEEeCeEEc
Q 047599 2 HGSITYITSRDSKNFHFNTFK---INIQAPENSPHTDGIHIAN-SNNIQILNSEISTGDDCASMDPGSQNVNISSNVKIW 77 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i~i~~---v~I~~~~~~~NtDGidi~~-s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~ 77 (165)
++.|+++++.|+....+.+.. ..+.. .....++.+.. +.++.+.++.+..+++. +..+.+++.++ ||++.
T Consensus 122 ~~~i~nv~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~i~-n~~~~ 195 (225)
T PF12708_consen 122 NVSISNVRIENSGGDGIYFNTGTDYRIIG---STHVSGIFIDNGSNNVIVNNCIFNGGDNG--IILGNNNITIS-NNTFE 195 (225)
T ss_dssp EEEEEEEEEES-SS-SEEEECCEECEEEC---CEEEEEEEEESCEEEEEEECEEEESSSCS--EECEEEEEEEE-CEEEE
T ss_pred eEEEEeEEEEccCccEEEEEccccCcEee---cccceeeeeccceeEEEECCccccCCCce--eEeecceEEEE-eEEEC
Confidence 345566666655444444441 12221 11223666654 45677799999999999 34445899999 99996
Q ss_pred CCCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCC
Q 047599 78 PSNVESISIRSLGGTPNEKEAREITVQNCNLKGTS 112 (165)
Q Consensus 78 ~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~ 112 (165)
....+||.+-.. .. +.++|++|.+..
T Consensus 196 ~~~~~gi~i~~~----~~-----~~i~n~~i~~~~ 221 (225)
T PF12708_consen 196 GNCGNGINIEGG----SN-----IIISNNTIENCD 221 (225)
T ss_dssp SSSSESEEEEEC----SE-----EEEEEEEEESSS
T ss_pred CccceeEEEECC----eE-----EEEEeEEEECCc
Confidence 521288887555 22 555555555443
No 25
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=96.88 E-value=0.011 Score=50.53 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=55.3
Q ss_pred CCeEEecceecEEEEeeEEe--------cCCceEEecCCCeeEEEEeCeEEcCCCcceEEEeecCCCCCCCCeeeEEEEe
Q 047599 34 TDGIHIANSNNIQILNSEIS--------TGDDCASMDPGSQNVNISSNVKIWPSNVESISIRSLGGTPNEKEAREITVQN 105 (165)
Q Consensus 34 tDGidi~~s~nV~I~n~~i~--------~gDDcIaiks~s~nI~i~~n~~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n 105 (165)
.|||-+..+++++|+++.+. ++.+.|.+.. +++++|+ ++.+......||.++. -+++.|++
T Consensus 77 ~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~-s~~v~I~-~n~i~g~~d~GIyv~~---------s~~~~v~n 145 (314)
T TIGR03805 77 GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVE-STNVLVE-DSYVRGASDAGIYVGQ---------SQNIVVRN 145 (314)
T ss_pred CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEec-cCCEEEE-CCEEECCCcccEEECC---------CCCeEEEC
Confidence 47999999999999999997 6677888865 7899999 9999664115677642 36788899
Q ss_pred eEEeCCCCC
Q 047599 106 CNLKGTSNG 114 (165)
Q Consensus 106 ~~~~~t~~g 114 (165)
+++.+...|
T Consensus 146 N~~~~n~~G 154 (314)
T TIGR03805 146 NVAEENVAG 154 (314)
T ss_pred CEEccCcce
Confidence 888877666
No 26
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=96.79 E-value=0.009 Score=50.24 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=40.5
Q ss_pred cEEEEeeEEeCCCC--ce---EEEeEEEEEcCCC---CC--CCCeEE------ecceecEEEEeeEEecCCceEEecCCC
Q 047599 2 HGSITYITSRDSKN--FH---FNTFKINIQAPEN---SP--HTDGIH------IANSNNIQILNSEISTGDDCASMDPGS 65 (165)
Q Consensus 2 nv~i~gitl~nsp~--w~---i~i~~v~I~~~~~---~~--NtDGid------i~~s~nV~I~n~~i~~gDDcIaiks~s 65 (165)
|+.+++++|-|++. |. +.+.++.+.+... +. --||+. ++.++||.|+|+.+.+-|--= .+
T Consensus 99 ~i~L~nv~~~~A~Et~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDAFW----n~ 174 (277)
T PF12541_consen 99 NITLENVDIPDADETLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDAFW----NC 174 (277)
T ss_pred CcEEEeeEeCCCcccCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEecccccc----cC
Confidence 67788888888875 43 3444444433211 11 123333 467899999999998876311 24
Q ss_pred eeEEEEeCeEE
Q 047599 66 QNVNISSNVKI 76 (165)
Q Consensus 66 ~nI~i~~n~~~ 76 (165)
+||+|. ++++
T Consensus 175 eNVtVy-DS~i 184 (277)
T PF12541_consen 175 ENVTVY-DSVI 184 (277)
T ss_pred CceEEE-cceE
Confidence 555555 5444
No 27
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.35 E-value=0.062 Score=49.47 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=73.7
Q ss_pred eEEEeEEEEEcCCCCCCCCeEEecceecEEEEeeEEecCCc----eEEecCCCeeEEEEeCeEEcCCC-cceEEEeecCC
Q 047599 17 HFNTFKINIQAPENSPHTDGIHIANSNNIQILNSEISTGDD----CASMDPGSQNVNISSNVKIWPSN-VESISIRSLGG 91 (165)
Q Consensus 17 ~i~i~~v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDD----cIaiks~s~nI~i~~n~~~~~g~-~hGisiGS~g~ 91 (165)
++.+.+++|.++.. =++++..|.+++|+|..|++-++ .+.+-+ |+|++|+ +|+|..+- ++.+.-|.-..
T Consensus 248 NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~-~~~fdtgDD~I~iksg~~~~ 321 (542)
T COG5434 248 NVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIE-GCRFDTGDDCIAIKSGAGLD 321 (542)
T ss_pred eEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEe-ccEEecCCceEEeecccCCc
Confidence 34555677776542 47899999999999999999766 444333 7899999 99995421 14555443311
Q ss_pred CCCC-CCeeeEEEEeeEEeCCCCCcccCccceEEEEcCCCCCeEeEEEEeEEEEec
Q 047599 92 TPNE-KEAREITVQNCNLKGTSNGGTSSTKVAVDLQCSKVKPRDKIELRDIDMACH 146 (165)
Q Consensus 92 ~~~~-~~v~nV~v~n~~~~~t~~gGt~~~~~a~~l~c~~~~pc~~i~~~dv~l~~~ 146 (165)
.... .-=++|+|+||.|.... | .+.+----...+++|++||..+...
T Consensus 322 ~~~~~~~~~~i~i~~c~~~~gh-G-------~~v~Gse~~ggv~ni~ved~~~~~~ 369 (542)
T COG5434 322 GKKGYGPSRNIVIRNCYFSSGH-G-------GLVLGSEMGGGVQNITVEDCVMDNT 369 (542)
T ss_pred ccccccccccEEEecceecccc-c-------ceEeeeecCCceeEEEEEeeeeccC
Confidence 1111 23489999999998433 2 1222222334577777777776553
No 28
>smart00656 Amb_all Amb_all domain.
Probab=96.23 E-value=0.021 Score=45.49 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=54.0
Q ss_pred CeEEecceecEEEEeeEEec-------CCceEEecCCCeeEEEEeCeEEcCCCcceEEEeecCCCC---CCCCeeeEEEE
Q 047599 35 DGIHIANSNNIQILNSEIST-------GDDCASMDPGSQNVNISSNVKIWPSNVESISIRSLGGTP---NEKEAREITVQ 104 (165)
Q Consensus 35 DGidi~~s~nV~I~n~~i~~-------gDDcIaiks~s~nI~i~~n~~~~~g~~hGisiGS~g~~~---~~~~v~nV~v~ 104 (165)
=||.+..++||.|+|..|+. +.|+|.+ .++++|+|. .|++..+ +.+..+.....+ ......+|+++
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~-~~~~~VwID-Hct~s~~--~~~~~~~~~~D~~~di~~~s~~vTvs 107 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISI-DGSSNVWID-HVSLSGC--TVTGFGDDTYDGLIDIKNGSTYVTIS 107 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEE-eCCCeEEEE-ccEeEcc--eeccCCCCCCCccEEECcccccEEEE
Confidence 46777777899999999986 4589999 458899999 9999665 333322221111 12356899999
Q ss_pred eeEEeCCCCC
Q 047599 105 NCNLKGTSNG 114 (165)
Q Consensus 105 n~~~~~t~~g 114 (165)
+|.|.+-..+
T Consensus 108 ~~~f~~h~~~ 117 (190)
T smart00656 108 NNYFHNHWKV 117 (190)
T ss_pred CceEecCCEE
Confidence 9999876554
No 29
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=96.14 E-value=0.023 Score=47.85 Aligned_cols=101 Identities=14% Similarity=0.241 Sum_probs=64.5
Q ss_pred cceecEEEEeeEEecCCceEEecCCCeeEEEEeCeEEcCCCcceEEEeecCCCCCCCCeeeEEEEeeEEeCCCCCcccCc
Q 047599 40 ANSNNIQILNSEISTGDDCASMDPGSQNVNISSNVKIWPSNVESISIRSLGGTPNEKEAREITVQNCNLKGTSNGGTSST 119 (165)
Q Consensus 40 ~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~t~~gGt~~~ 119 (165)
-+.++++|+||.|..|.- +||- ++||.+. +|.|..- | -.-.++++.++||.|....++|-=.+
T Consensus 16 f~~~d~~l~~~~f~dGES--~LKe-s~nI~~~-~~~F~~K------------Y-P~Wh~~~~~i~~~~f~~~aRa~iWYs 78 (277)
T PF12541_consen 16 FGSHDLRLENCTFADGES--PLKE-SRNIELK-NCIFKWK------------Y-PLWHSDNIKIENCYFTEMARAAIWYS 78 (277)
T ss_pred cccCCCEEEeeEEeCCCc--cccc-ccceEEE-CCEEeeE------------C-ceEEECCeEEEeeEEeecceeeeeEe
Confidence 356899999999994443 3444 6799999 9999322 1 23457888888888887666531111
Q ss_pred cceEEEEc----CC-CCCeEeEEEEeEEEEecCCCCCCcCceeeEeeE
Q 047599 120 KVAVDLQC----SK-VKPRDKIELRDIDMACHGAGGGQAAVSNYSNVH 162 (165)
Q Consensus 120 ~~a~~l~c----~~-~~pc~~i~~~dv~l~~~~~~~~~~~~~~C~nv~ 162 (165)
.....-.| .+ -..|++|+|+||+|..+. +.-|.|.++.
T Consensus 79 ~~i~m~d~~i~apK~fR~~~~i~L~nv~~~~A~-----Et~W~c~~i~ 121 (277)
T PF12541_consen 79 NNITMKDSVIQAPKMFRECSNITLENVDIPDAD-----ETLWNCRGIK 121 (277)
T ss_pred CCEEEEeeeccCchHhhcccCcEEEeeEeCCCc-----ccCEEeCCeE
Confidence 11111122 11 135899999999986665 3468887764
No 30
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=95.93 E-value=0.094 Score=42.23 Aligned_cols=52 Identities=31% Similarity=0.280 Sum_probs=31.3
Q ss_pred CCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEeCeEEcCCCcceEEE
Q 047599 32 PHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISSNVKIWPSNVESISI 86 (165)
Q Consensus 32 ~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~g~~hGisi 86 (165)
.+..||.+..++++.|+++.+......|.+...+.+ +|+ ++++.... .||.+
T Consensus 55 ~~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s~~~-~I~-~N~i~~n~-~GI~l 106 (236)
T PF05048_consen 55 NNRYGIHLMGSSNNTIENNTISNNGYGIYLMGSSNN-TIS-NNTISNNG-YGIYL 106 (236)
T ss_pred CCCeEEEEEccCCCEEEeEEEEccCCCEEEEcCCCc-EEE-CCEecCCC-ceEEE
Confidence 345667777776777777777666666666665534 666 66664321 35544
No 31
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.64 E-value=0.057 Score=43.28 Aligned_cols=70 Identities=26% Similarity=0.369 Sum_probs=48.2
Q ss_pred CeEEec-ceecEEEEeeEEec----------------CCceEEecCCCeeEEEEeCeEEcCCCc-------ce-EEEeec
Q 047599 35 DGIHIA-NSNNIQILNSEIST----------------GDDCASMDPGSQNVNISSNVKIWPSNV-------ES-ISIRSL 89 (165)
Q Consensus 35 DGidi~-~s~nV~I~n~~i~~----------------gDDcIaiks~s~nI~i~~n~~~~~g~~-------hG-isiGS~ 89 (165)
-|+-+. .++||.|+|..|+. +-|+|.+. +++||+|- .|++..+.. =| +.+
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~-~~~nVWID-H~sfs~~~~~~~~~~~Dg~idi--- 111 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID-NSSNVWID-HCSFSWGNFECNSDSSDGLIDI--- 111 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-STEEEEEE-S-EEEETTS-GGGSSSSSSEEE---
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-ecccEEEe-ccEEeccccccccccCCceEEE---
Confidence 477886 88999999999997 77999999 56699999 999943300 12 332
Q ss_pred CCCCCCCCeeeEEEEeeEEeCCCCC
Q 047599 90 GGTPNEKEAREITVQNCNLKGTSNG 114 (165)
Q Consensus 90 g~~~~~~~v~nV~v~n~~~~~t~~g 114 (165)
...-.+||+++|.|.+...+
T Consensus 112 -----~~~s~~vTiS~n~f~~~~k~ 131 (200)
T PF00544_consen 112 -----KKGSDNVTISNNIFDNHNKT 131 (200)
T ss_dssp -----ESSTEEEEEES-EEEEEEET
T ss_pred -----EeCCceEEEEchhccccccc
Confidence 23568999999999886543
No 32
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=94.84 E-value=1.1 Score=35.92 Aligned_cols=29 Identities=28% Similarity=0.195 Sum_probs=13.9
Q ss_pred CeEEecceecEEEEeeEEecCCceEEecC
Q 047599 35 DGIHIANSNNIQILNSEISTGDDCASMDP 63 (165)
Q Consensus 35 DGidi~~s~nV~I~n~~i~~gDDcIaiks 63 (165)
+||-+..+.+..|++..|......|.+..
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~ 108 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGYGIYLYG 108 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCceEEEee
Confidence 55555544444555555544444444443
No 33
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=94.75 E-value=0.18 Score=45.46 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=29.5
Q ss_pred CCCCeEEecceecEEEEeeEEecCC-ceEEecCCCeeEEEEeCeEEc
Q 047599 32 PHTDGIHIANSNNIQILNSEISTGD-DCASMDPGSQNVNISSNVKIW 77 (165)
Q Consensus 32 ~NtDGidi~~s~nV~I~n~~i~~gD-DcIaiks~s~nI~i~~n~~~~ 77 (165)
...+||+++.+.+|+|++-+|+..+ |.|=+.+.+ |+.|+ +..|.
T Consensus 237 ~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss-~~~i~-~N~~~ 281 (455)
T TIGR03808 237 QYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS-NIQIT-GNSVS 281 (455)
T ss_pred CccccEEEEccCCeEEECCEEeccccceEEEEccc-CcEEE-CcEee
Confidence 3566777777777777777777777 777776643 55555 55553
No 34
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=93.89 E-value=0.27 Score=42.45 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=56.8
Q ss_pred CCCeEEecceecEEEEeeEEec-C-----CceEEecCCCeeEEEEeCeEEcCCCcceEEEeecCCCC--CCCCeeeEEEE
Q 047599 33 HTDGIHIANSNNIQILNSEIST-G-----DDCASMDPGSQNVNISSNVKIWPSNVESISIRSLGGTP--NEKEAREITVQ 104 (165)
Q Consensus 33 NtDGidi~~s~nV~I~n~~i~~-g-----DDcIaiks~s~nI~i~~n~~~~~g~~hGisiGS~g~~~--~~~~v~nV~v~ 104 (165)
..=||-|...+||.|+|..|+- . +|.|.|-.+++||+|. +|+|..+. .+ .=++.+... ...+--.|+|+
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWID-H~tf~~~s-~~-~~~~h~DGl~Dik~~AnyITiS 191 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWID-HNTFSGGS-YN-ASGSHGDGLVDIKKDANYITIS 191 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEE-eeEecccc-cc-ccccCCCccEEeccCCcEEEEE
Confidence 4558888888999999999965 2 6999998778999999 99997642 11 112221111 12345689999
Q ss_pred eeEEeCCCCC
Q 047599 105 NCNLKGTSNG 114 (165)
Q Consensus 105 n~~~~~t~~g 114 (165)
++.|.+...+
T Consensus 192 ~n~fhdh~Ks 201 (345)
T COG3866 192 YNKFHDHDKS 201 (345)
T ss_pred eeeeecCCee
Confidence 9999987755
No 35
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=90.04 E-value=9.4 Score=34.65 Aligned_cols=61 Identities=11% Similarity=-0.008 Sum_probs=41.2
Q ss_pred cEEEEeeEEeCCCCceEEEeEE--EEE-cCCCCCCCCeEEecceecEEEEeeEEec-CCceEEec
Q 047599 2 HGSITYITSRDSKNFHFNTFKI--NIQ-APENSPHTDGIHIANSNNIQILNSEIST-GDDCASMD 62 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i~i~~v--~I~-~~~~~~NtDGidi~~s~nV~I~n~~i~~-gDDcIaik 62 (165)
+++|++.+|++++.|.+.+.+. .|. +.-...-..+|.++.+++++|++-.|.- .|+.|.+.
T Consensus 145 ~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~ 209 (455)
T TIGR03808 145 DVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEIL 209 (455)
T ss_pred ceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEE
Confidence 5778888888888888877762 222 1111234455888888888888777754 77777777
No 36
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=80.80 E-value=22 Score=33.16 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=56.4
Q ss_pred eEEEeEEEEEcCCCCCCCCeEEeccee----cEEEEeeEEec----CCceEEecCCCeeEEEEeCeEEcC-CCcceEEEe
Q 047599 17 HFNTFKINIQAPENSPHTDGIHIANSN----NIQILNSEIST----GDDCASMDPGSQNVNISSNVKIWP-SNVESISIR 87 (165)
Q Consensus 17 ~i~i~~v~I~~~~~~~NtDGidi~~s~----nV~I~n~~i~~----gDDcIaiks~s~nI~i~~n~~~~~-g~~hGisiG 87 (165)
++++.+++|.+|.. =.+++.+.. ++.|+|..+-- +=|.+.+-+++ +|+ ||.++. . -+|++
T Consensus 330 ~~~~~GiTI~~pP~----~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS---~i~-dcF~h~nD--D~iKl- 398 (582)
T PF03718_consen 330 TLTCEGITINDPPF----HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNS---TIR-DCFIHVND--DAIKL- 398 (582)
T ss_dssp EEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT----EEE-EEEEEESS---SEE--
T ss_pred eEEEEeeEecCCCc----ceEEecCCccccccceeeceeeeeeEEeccCCccccCCC---eee-eeEEEecC--chhhe-
Confidence 56677799987642 124444322 35666666542 67888888766 778 999853 4 45653
Q ss_pred ecCCCCCCCCeeeEEEEeeEEeCCCCCcccCccceEEEEcCCCCCeEeEEEEeEEEEec
Q 047599 88 SLGGTPNEKEAREITVQNCNLKGTSNGGTSSTKVAVDLQCSKVKPRDKIELRDIDMACH 146 (165)
Q Consensus 88 S~g~~~~~~~v~nV~v~n~~~~~t~~gGt~~~~~a~~l~c~~~~pc~~i~~~dv~l~~~ 146 (165)
.-+++.++||++.+..+| ..+ -.+......+++.++|++|-..
T Consensus 399 ---------YhS~v~v~~~ViWk~~Ng------pii-q~GW~pr~isnv~veni~IIh~ 441 (582)
T PF03718_consen 399 ---------YHSNVSVSNTVIWKNENG------PII-QWGWTPRNISNVSVENIDIIHN 441 (582)
T ss_dssp ----------STTEEEEEEEEEE-SSS-------SE-E--CS---EEEEEEEEEEEEE-
T ss_pred ---------eecCcceeeeEEEecCCC------CeE-EeeccccccCceEEeeeEEEee
Confidence 237999999999998866 122 2334455699999999999776
No 37
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=80.46 E-value=3.6 Score=24.43 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=24.2
Q ss_pred eEEecceecEEEEeeEEecCCceEEecCCCeeEEEE
Q 047599 36 GIHIANSNNIQILNSEISTGDDCASMDPGSQNVNIS 71 (165)
Q Consensus 36 Gidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~ 71 (165)
||.++.|.+.+|++..+....|.|.+-..+ +-.|+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~s~-~n~i~ 35 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTDSS-NNTLS 35 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEeCC-CCEeE
Confidence 677777777778777777777777776653 33444
No 38
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=75.75 E-value=17 Score=32.42 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=32.2
Q ss_pred EEecCC-----CeeEEEEeCeEE-cCCCcc----------eEEEeecCCCCCCCCeeeEEEEeeEEeCCC
Q 047599 59 ASMDPG-----SQNVNISSNVKI-WPSNVE----------SISIRSLGGTPNEKEAREITVQNCNLKGTS 112 (165)
Q Consensus 59 Iaiks~-----s~nI~i~~n~~~-~~g~~h----------GisiGS~g~~~~~~~v~nV~v~n~~~~~t~ 112 (165)
|||.++ ++.|.|++.|++ ++| . ++.+......+.-.+..+|+|.||.|.+-+
T Consensus 67 VaL~Pg~~Y~i~~~V~I~~~cYIiGnG--A~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~~ 134 (386)
T PF01696_consen 67 VALRPGAVYVIRKPVNIRSCCYIIGNG--ATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGRD 134 (386)
T ss_pred EEeCCCCEEEEeeeEEecceEEEECCC--EEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecCC
Confidence 677777 456777766666 334 2 233333322222246889999999999865
No 39
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=71.79 E-value=5.2 Score=34.79 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=36.6
Q ss_pred ecEEEEeeEEec-CCceEEecC--CCeeEEEEe----CeEEcCCCc-ceEEEeecCC-----CCCCCCeeeEEEEeeE
Q 047599 43 NNIQILNSEIST-GDDCASMDP--GSQNVNISS----NVKIWPSNV-ESISIRSLGG-----TPNEKEAREITVQNCN 107 (165)
Q Consensus 43 ~nV~I~n~~i~~-gDDcIaiks--~s~nI~i~~----n~~~~~g~~-hGisiGS~g~-----~~~~~~v~nV~v~n~~ 107 (165)
..++|.||.++- +-|+|--.- +.++|+|.+ ..-|.+|+- -||-||-.|. |+....|+|..+-|++
T Consensus 177 dgaritn~rfs~lqgdaiewnvaindr~ilisdhvie~inctngkinwgigiglagstydn~ype~q~vknfvvanit 254 (464)
T PRK10123 177 IGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANIT 254 (464)
T ss_pred ccceeeccccccccCceEEEEEEecccceeeehheheeecccCCcccceeeeeeccccccCCCchhhhhhhEEEEecc
Confidence 456777777754 556553221 123454431 455655532 4788888875 3334456666666655
No 40
>PLN02773 pectinesterase
Probab=65.38 E-value=91 Score=26.98 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=31.3
Q ss_pred cEEEEeeEEecCCceEEecCCCeeEEEEeCeEEcCCCcce-EEEeecCCCCCCCCeeeEEEEeeEEeCCC
Q 047599 44 NIQILNSEISTGDDCASMDPGSQNVNISSNVKIWPSNVES-ISIRSLGGTPNEKEAREITVQNCNLKGTS 112 (165)
Q Consensus 44 nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~g~~hG-isiGS~g~~~~~~~v~nV~v~n~~~~~t~ 112 (165)
.-.++||+|+-.=|-|- |.-..+++ +|.+..-. .| |.--+- .....-.-..|.+|+|.+..
T Consensus 152 r~yf~~c~IeG~VDFIF---G~g~a~Fe-~c~i~s~~-~g~ITA~~r---~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 152 KQYLRDCYIEGSVDFIF---GNSTALLE-HCHIHCKS-AGFITAQSR---KSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred CEEEEeeEEeecccEEe---eccEEEEE-eeEEEEcc-CcEEECCCC---CCCCCCceEEEEccEEecCC
Confidence 34555555554444443 23357788 88884320 33 221100 01112346789999998754
No 41
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=64.48 E-value=14 Score=30.31 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=30.6
Q ss_pred CCCCeEEecceecEEEEeeEEec-CCceEEecCCCeeEEEE
Q 047599 32 PHTDGIHIANSNNIQILNSEIST-GDDCASMDPGSQNVNIS 71 (165)
Q Consensus 32 ~NtDGidi~~s~nV~I~n~~i~~-gDDcIaiks~s~nI~i~ 71 (165)
+-.||||..+ +.+|+|.+.+. ++|++.+|+.+..++|.
T Consensus 73 ~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ 111 (215)
T PF03211_consen 73 NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTII 111 (215)
T ss_dssp S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEE
T ss_pred CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEe
Confidence 4679999998 89999999965 99999999986566666
No 42
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=60.31 E-value=55 Score=27.31 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=48.4
Q ss_pred EeEEEEEcCCCCCCCCeEEecceecEEEEeeEEec-CCceEEe-----cCCCeeEEEEeCeEEcC-CCcceEEEeecCCC
Q 047599 20 TFKINIQAPENSPHTDGIHIANSNNIQILNSEIST-GDDCASM-----DPGSQNVNISSNVKIWP-SNVESISIRSLGGT 92 (165)
Q Consensus 20 i~~v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~-gDDcIai-----ks~s~nI~i~~n~~~~~-g~~hGisiGS~g~~ 92 (165)
+.+++|.++.. .--=|+-+.++ +.+|+|++|.. +-+.|.+ ++.-.+++|+ +..+.. . +||++-..
T Consensus 101 i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~-GN~~~~~~--~Gi~i~~~--- 172 (246)
T PF07602_consen 101 ISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVIS-GNSIYFNK--TGISISDN--- 172 (246)
T ss_pred EEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEee-cceEEecC--cCeEEEcc---
Confidence 34477777621 12336788776 88888888876 3455644 3445667777 666644 5 77777544
Q ss_pred CCCCCeeeEEEEeeEEeCCCCC
Q 047599 93 PNEKEAREITVQNCNLKGTSNG 114 (165)
Q Consensus 93 ~~~~~v~nV~v~n~~~~~t~~g 114 (165)
... +.+ .++|..|.+...|
T Consensus 173 -~~~-~~n-~I~NN~I~~N~~G 191 (246)
T PF07602_consen 173 -AAP-VEN-KIENNIIENNNIG 191 (246)
T ss_pred -cCC-ccc-eeeccEEEeCCcC
Confidence 222 222 3455666654444
No 43
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=59.39 E-value=13 Score=18.36 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=8.4
Q ss_pred cEEEEeeEEecCCc-eEEec
Q 047599 44 NIQILNSEISTGDD-CASMD 62 (165)
Q Consensus 44 nV~I~n~~i~~gDD-cIaik 62 (165)
+++|+++.|..... +|.++
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 44555555444332 44443
No 44
>PLN02480 Probable pectinesterase
Probab=54.66 E-value=1.1e+02 Score=26.75 Aligned_cols=14 Identities=7% Similarity=0.079 Sum_probs=10.4
Q ss_pred eeeEEEEeeEEeCC
Q 047599 98 AREITVQNCNLKGT 111 (165)
Q Consensus 98 v~nV~v~n~~~~~t 111 (165)
-.-..|.||++.+.
T Consensus 239 ~~GfvF~~C~i~g~ 252 (343)
T PLN02480 239 NSGFVFIKGKVYGI 252 (343)
T ss_pred CCEEEEECCEEccc
Confidence 35678889998763
No 45
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=45.40 E-value=1.8e+02 Score=24.26 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=52.6
Q ss_pred CeEEecceecEEEEeeEEecCCc----eEEecCCCeeEEEEeCeEEcCCCcceEEEeecCCCCCCCCeeeEEEEeeEEeC
Q 047599 35 DGIHIANSNNIQILNSEISTGDD----CASMDPGSQNVNISSNVKIWPSNVESISIRSLGGTPNEKEAREITVQNCNLKG 110 (165)
Q Consensus 35 DGidi~~s~nV~I~n~~i~~gDD----cIaiks~s~nI~i~~n~~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~~ 110 (165)
.-+-+....+..|+...|.+.+. +|.|.+. +.+|+ |++|.....+||.+=... ....+.++.+++..+..
T Consensus 89 qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess--~~tI~-Nntf~~~~~~GI~v~g~~---~~~~i~~~vI~GN~~~~ 162 (246)
T PF07602_consen 89 QNVTIILANNATISGVTITNPNIARGTGIWIESS--SPTIA-NNTFTNNGREGIFVTGTS---ANPGINGNVISGNSIYF 162 (246)
T ss_pred eeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC--CcEEE-eeEEECCccccEEEEeee---cCCcccceEeecceEEe
Confidence 34556666788889999988865 6777664 88999 999976322787662220 14578888899998888
Q ss_pred CCCC
Q 047599 111 TSNG 114 (165)
Q Consensus 111 t~~g 114 (165)
...|
T Consensus 163 ~~~G 166 (246)
T PF07602_consen 163 NKTG 166 (246)
T ss_pred cCcC
Confidence 7765
No 46
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=41.26 E-value=2.6e+02 Score=24.98 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=11.9
Q ss_pred EEcCCCCCeEeEEEEeEEEEecCC
Q 047599 125 LQCSKVKPRDKIELRDIDMACHGA 148 (165)
Q Consensus 125 l~c~~~~pc~~i~~~dv~l~~~~~ 148 (165)
+-|.+ ..| ..|..|+|.....
T Consensus 252 ~tC~~-g~~--~pL~tiHIvs~~r 272 (386)
T PF01696_consen 252 VTCAG-GHV--QPLSTIHIVSHRR 272 (386)
T ss_pred EEeCC-CeE--EeeeeEEEeCCCC
Confidence 44443 344 4677777766554
No 47
>PLN02480 Probable pectinesterase
Probab=39.93 E-value=77 Score=27.72 Aligned_cols=40 Identities=8% Similarity=0.181 Sum_probs=28.6
Q ss_pred eEEecceecEEEEeeEEecC----------CceEEecCCCeeEEEEeCeEEc
Q 047599 36 GIHIANSNNIQILNSEISTG----------DDCASMDPGSQNVNISSNVKIW 77 (165)
Q Consensus 36 Gidi~~s~nV~I~n~~i~~g----------DDcIaiks~s~nI~i~~n~~~~ 77 (165)
-+-+.+ .+++++|..|.|- +=+||+......+.+. ||.|.
T Consensus 126 TvtV~a-~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~-~c~f~ 175 (343)
T PLN02480 126 TFTVEA-PHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFY-HCAFY 175 (343)
T ss_pred EEEEEC-CCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEE-eeEEe
Confidence 344444 5777777777774 3588887777788888 88884
No 48
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=38.76 E-value=1.5e+02 Score=26.33 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=29.8
Q ss_pred CCCCeEEecceecEEEEeeEEecCCceEEecCC
Q 047599 32 PHTDGIHIANSNNIQILNSEISTGDDCASMDPG 64 (165)
Q Consensus 32 ~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~ 64 (165)
.-.+||.++++++++|..-.|+=+-|||=.+..
T Consensus 148 ~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S 180 (408)
T COG3420 148 ERGNGIYVYNAPGALVVGNDISYGRDGIYSDTS 180 (408)
T ss_pred hccCceEEEcCCCcEEEcCccccccceEEEccc
Confidence 468999999999999999999999999987753
No 49
>PLN02682 pectinesterase family protein
Probab=36.16 E-value=3.1e+02 Score=24.31 Aligned_cols=35 Identities=6% Similarity=0.027 Sum_probs=24.4
Q ss_pred ecEEEEeeEEecCC----------ceEEecCCCeeEEEEeCeEEcC
Q 047599 43 NNIQILNSEISTGD----------DCASMDPGSQNVNISSNVKIWP 78 (165)
Q Consensus 43 ~nV~I~n~~i~~gD----------DcIaiks~s~nI~i~~n~~~~~ 78 (165)
.++..+|..|.|.- =+||+........+. ||.+.+
T Consensus 163 ~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy-~C~f~G 207 (369)
T PLN02682 163 PYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFY-GCKFLG 207 (369)
T ss_pred CCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEE-cceEec
Confidence 45666666666632 278888877888888 888843
No 50
>PLN02682 pectinesterase family protein
Probab=35.66 E-value=3.2e+02 Score=24.26 Aligned_cols=14 Identities=21% Similarity=0.617 Sum_probs=10.5
Q ss_pred eeeEEEEeeEEeCC
Q 047599 98 AREITVQNCNLKGT 111 (165)
Q Consensus 98 v~nV~v~n~~~~~t 111 (165)
-.-..|.||+|.+.
T Consensus 267 ~~GfvF~~C~itg~ 280 (369)
T PLN02682 267 DTGFSFVNCKVTGS 280 (369)
T ss_pred CceEEEEeeEecCC
Confidence 35788889998763
No 51
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=34.13 E-value=2.8e+02 Score=26.59 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=21.4
Q ss_pred cEEEEeeEEecCCceEEecCCCeeEEEEeCeEEc
Q 047599 44 NIQILNSEISTGDDCASMDPGSQNVNISSNVKIW 77 (165)
Q Consensus 44 nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~ 77 (165)
|+.|+|..=..+--+||+........+. ||.|.
T Consensus 343 nitf~Ntag~~~~QAVAlrv~~Dra~fy-~C~f~ 375 (670)
T PLN02217 343 NIGFENTAGAIKHQAVAIRVLSDESIFY-NCKFD 375 (670)
T ss_pred eeEEEeCCCCCCCceEEEEecCCcEEEE-cceee
Confidence 4444444322234588888888888888 88884
No 52
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=29.99 E-value=2.7e+02 Score=26.01 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=23.3
Q ss_pred ecEEEEeeEEecC-----CceEEecCCCeeEEEEeCeEEc
Q 047599 43 NNIQILNSEISTG-----DDCASMDPGSQNVNISSNVKIW 77 (165)
Q Consensus 43 ~nV~I~n~~i~~g-----DDcIaiks~s~nI~i~~n~~~~ 77 (165)
+++..+|..|.|- --+||+...+..+.+. ||.|.
T Consensus 330 ~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~-~c~~~ 368 (553)
T PLN02708 330 DGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIE-NCEFL 368 (553)
T ss_pred CCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEE-eeeee
Confidence 4566666666552 2478888877788888 88884
No 53
>PLN02432 putative pectinesterase
Probab=29.38 E-value=3.6e+02 Score=23.03 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=29.6
Q ss_pred cEEEEeeEEecCCceEEecCCCeeEEEEeCeEEcC-CCcce-EEEeecCCCCCCCCeeeEEEEeeEEeC
Q 047599 44 NIQILNSEISTGDDCASMDPGSQNVNISSNVKIWP-SNVES-ISIRSLGGTPNEKEAREITVQNCNLKG 110 (165)
Q Consensus 44 nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~-g~~hG-isiGS~g~~~~~~~v~nV~v~n~~~~~ 110 (165)
.-.++||+|.-.=|-|-= .-..+++ +|.+.. ...+| |.--+- . ....-.-..|.+|++.+
T Consensus 143 r~yf~~c~I~G~VDFIFG---~g~a~Fe-~c~i~s~~~~~g~itA~~r--~-~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 143 RHYYRNCYIEGATDFICG---NAASLFE-KCHLHSLSPNNGAITAQQR--T-SASENTGFTFLGCKLTG 204 (293)
T ss_pred CEEEEeCEEEecccEEec---CceEEEE-eeEEEEecCCCCeEEecCC--C-CCCCCceEEEEeeEEcc
Confidence 345555555554454431 2356777 888842 10023 221110 0 11223467889999875
No 54
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=27.41 E-value=3.5e+02 Score=23.78 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=25.1
Q ss_pred CeeEEEEeCeEEcCCCcceEEEeec---CCCCCCCCeeeEEEEeeEEeCCC
Q 047599 65 SQNVNISSNVKIWPSNVESISIRSL---GGTPNEKEAREITVQNCNLKGTS 112 (165)
Q Consensus 65 s~nI~i~~n~~~~~g~~hGisiGS~---g~~~~~~~v~nV~v~n~~~~~t~ 112 (165)
|.|..|. |.-.-++ .|+-||-- |.|. .--+|....|+.+.++.
T Consensus 300 cdnfvid-ni~mvns--agmligygvikg~yl--sipqnfkln~i~ldn~~ 345 (464)
T PRK10123 300 CDNFVID-NIEMINS--AGMLIGYGVIKGKYL--SIPQNFKLNNIQLDNTH 345 (464)
T ss_pred ccceEEe-ccccccc--cccEEEeeeeeccEe--cccccceeceEeecccc
Confidence 6677777 7777776 67666643 2222 12355566666666554
No 55
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=25.85 E-value=5.5e+02 Score=23.94 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred cEEEEeeEEeCCCCceEEEeEEEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEeCeEEcCCCc
Q 047599 2 HGSITYITSRDSKNFHFNTFKINIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISSNVKIWPSNV 81 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i~i~~v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~g~~ 81 (165)
++..++|+|+|. +.....-.-.+-+.+ ..+.+++|.|...-|=+-..++-+ ..+ +|++.+.
T Consensus 320 ~F~a~nit~~Nt-------------ag~~~~QAVAl~v~~-D~~~fy~C~~~G~QDTLy~~~~rq--yy~-~C~I~Gt-- 380 (537)
T PLN02506 320 GFIARDITFRNT-------------AGPQNHQAVALRVDS-DQSAFYRCSMEGYQDTLYAHSLRQ--FYR-ECEIYGT-- 380 (537)
T ss_pred CeEEEeeEEEeC-------------CCCCCCceEEEEecC-CcEEEEcceeecccccceecCCce--EEE-eeEEecc--
Q ss_pred ceEEEeecCCCCCCCCeeeEEEEeeEEe
Q 047599 82 ESISIRSLGGTPNEKEAREITVQNCNLK 109 (165)
Q Consensus 82 hGisiGS~g~~~~~~~v~nV~v~n~~~~ 109 (165)
==+-+|.. ...|+||.|.
T Consensus 381 VDFIFG~a----------~avfq~C~i~ 398 (537)
T PLN02506 381 IDFIFGNG----------AAVLQNCKIY 398 (537)
T ss_pred cceEccCc----------eeEEeccEEE
No 56
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=24.98 E-value=5.3e+02 Score=23.75 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=33.8
Q ss_pred cEEEEeeEEecCCceEEecCCCeeEEEEeCeEEcCCC----cce-EEEeecCCCCCCCCeeeEEEEeeEEeCCC
Q 047599 44 NIQILNSEISTGDDCASMDPGSQNVNISSNVKIWPSN----VES-ISIRSLGGTPNEKEAREITVQNCNLKGTS 112 (165)
Q Consensus 44 nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~g~----~hG-isiGS~g~~~~~~~v~nV~v~n~~~~~t~ 112 (165)
.-.+++|+|.-.=|-|== ....+++ ||.+..-. ..+ |.- .|.. ....-.-+.|.+|++....
T Consensus 320 rqyy~~C~I~G~vDFIFG---~a~avf~-~C~i~~~~~~~~~~~~iTA--q~r~-~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 320 RQFYRECDIYGTIDFIFG---NAAAVFQ-NCYLFLRRPHGKSYNVILA--NGRS-DPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred cEEEEeeEEEeccceEec---ccceeec-ccEEEEecCCCCCceEEEe--cCCC-CCCCCceEEEEeeEEecCC
Confidence 456777777755565542 2356788 88884210 011 221 1110 1123457899999998764
No 57
>PLN02634 probable pectinesterase
Probab=24.67 E-value=4.9e+02 Score=22.99 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=10.6
Q ss_pred eeeEEEEeeEEeCC
Q 047599 98 AREITVQNCNLKGT 111 (165)
Q Consensus 98 v~nV~v~n~~~~~t 111 (165)
-.-..|.||++.+.
T Consensus 253 ~~GfvF~~C~vtg~ 266 (359)
T PLN02634 253 KTGFAFVGCRVTGT 266 (359)
T ss_pred CcEEEEEcCEEcCC
Confidence 35678999999763
No 58
>PLN02497 probable pectinesterase
Probab=23.80 E-value=4.9e+02 Score=22.67 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred cEEEEeeEEeCCCCceE--------EEeEEEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEeC
Q 047599 2 HGSITYITSRDSKNFHF--------NTFKINIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISSN 73 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i--------~i~~v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n 73 (165)
++.+++|+|+|+..+.. .-.-+++.+. .+.+++|.|...-|=+-...+ .-..+ +
T Consensus 116 ~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gD---------------r~~fy~C~f~G~QDTLy~~~g--Rqyf~-~ 177 (331)
T PLN02497 116 NTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGD---------------KSAFYSCGFAGVQDTLWDSDG--RHYFK-R 177 (331)
T ss_pred CeEEEccEEEeCCCCccccCCCCCcceEEEEecCC---------------cEEEEeeEEeccccceeeCCC--cEEEE-e
Q ss_pred eEEcCCCcceEEEeecCCCCCCCCeeeEEEEeeEEe
Q 047599 74 VKIWPSNVESISIRSLGGTPNEKEAREITVQNCNLK 109 (165)
Q Consensus 74 ~~~~~g~~hGisiGS~g~~~~~~~v~nV~v~n~~~~ 109 (165)
|++.+. ==+-+|.- ...|++|++.
T Consensus 178 C~IeG~--VDFIFG~g----------~a~Fe~C~I~ 201 (331)
T PLN02497 178 CTIQGA--VDFIFGSG----------QSIYESCVIQ 201 (331)
T ss_pred CEEEec--ccEEccCc----------eEEEEccEEE
No 59
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=22.76 E-value=4.5e+02 Score=24.82 Aligned_cols=34 Identities=6% Similarity=-0.008 Sum_probs=22.4
Q ss_pred cEEEEeeEEec-----CCceEEecCCCeeEEEEeCeEEcC
Q 047599 44 NIQILNSEIST-----GDDCASMDPGSQNVNISSNVKIWP 78 (165)
Q Consensus 44 nV~I~n~~i~~-----gDDcIaiks~s~nI~i~~n~~~~~ 78 (165)
++..+|..|.| +-=+||+...+....+. ||.|.+
T Consensus 373 ~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~-~c~~~G 411 (596)
T PLN02745 373 GFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFL-NCRFEG 411 (596)
T ss_pred CEEEEeeEEEECCCCCCCceEEEEEcCCcEEEE-eeEEee
Confidence 44445555554 33578888877788888 888843
No 60
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=22.26 E-value=6.5e+02 Score=23.52 Aligned_cols=33 Identities=15% Similarity=-0.013 Sum_probs=19.9
Q ss_pred ecEEEEeeEEecCCceEEecCCCeeEEEEeCeEEcC
Q 047599 43 NNIQILNSEISTGDDCASMDPGSQNVNISSNVKIWP 78 (165)
Q Consensus 43 ~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~ 78 (165)
..+.+++|.|...-|=.-..++- -..+ +|++.+
T Consensus 358 D~~~f~~c~~~G~QDTLy~~~~r--q~y~-~C~I~G 390 (553)
T PLN02708 358 DLSVIENCEFLGNQDTLYAHSLR--QFYK-SCRIQG 390 (553)
T ss_pred CcEEEEeeeeeeccccceeCCCc--eEEE-eeEEee
Confidence 56777777777766666655542 2345 666644
No 61
>PLN02197 pectinesterase
Probab=21.74 E-value=6.9e+02 Score=23.62 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred cEEEEeeEEeCCCCceEEEeEEEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEeCeEEcCCCc
Q 047599 2 HGSITYITSRDSKNFHFNTFKINIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISSNVKIWPSNV 81 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i~i~~v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~g~~ 81 (165)
++..++|+|+|+ +....+-.-.+.+.+ ....+++|.|.-.-|=+-..++-+ ..+ +|++.+.
T Consensus 365 ~F~a~nitf~Nt-------------ag~~~~QAVAlrv~~-D~~~fy~C~f~GyQDTLy~~~~Rq--yy~-~C~I~Gt-- 425 (588)
T PLN02197 365 GFMAKWIGFKNT-------------AGPMGHQAVAIRVNG-DRAVIFNCRFDGYQDTLYVNNGRQ--FYR-NIVVSGT-- 425 (588)
T ss_pred cEEEEEeEEEeC-------------CCCCCCceEEEEecC-CcEEEEEeEEEecCcceEecCCCE--EEE-eeEEEec--
Q ss_pred ceEEEeecCCCCCCCCeeeEEEEeeEEe
Q 047599 82 ESISIRSLGGTPNEKEAREITVQNCNLK 109 (165)
Q Consensus 82 hGisiGS~g~~~~~~~v~nV~v~n~~~~ 109 (165)
==+-+|.. ...|+||.+.
T Consensus 426 VDFIFG~a----------~avfq~C~i~ 443 (588)
T PLN02197 426 VDFIFGKS----------ATVIQNSLIV 443 (588)
T ss_pred ccccccce----------eeeeecCEEE
No 62
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=21.60 E-value=6.7e+02 Score=23.44 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred cEEEEeeEEeCCCCceEEEeEEEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEeCeEEcCCCc
Q 047599 2 HGSITYITSRDSKNFHFNTFKINIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISSNVKIWPSNV 81 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i~i~~v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~g~~ 81 (165)
++..++|+|+|+ +....+-.-.+-+.+ ....+++|.|...-|=.-..++-+ ..+ +|++.+.
T Consensus 324 ~F~a~nitf~Nt-------------ag~~~~QAVAlrv~~-D~~~fy~C~~~G~QDTLy~~~~Rq--yy~-~C~I~Gt-- 384 (548)
T PLN02301 324 GFIAQDIWFQNT-------------AGPEKHQAVALRVSA-DQAVINRCRIDAYQDTLYAHSLRQ--FYR-DSYITGT-- 384 (548)
T ss_pred ceEEEeeEEEEC-------------CCCCCCceEEEEecC-CcEEEEeeeeeeccccceecCCcE--EEE-eeEEEec--
Q ss_pred ceEEEeecCCCCCCCCeeeEEEEeeEEe
Q 047599 82 ESISIRSLGGTPNEKEAREITVQNCNLK 109 (165)
Q Consensus 82 hGisiGS~g~~~~~~~v~nV~v~n~~~~ 109 (165)
==+=+|.. ...|+||.+.
T Consensus 385 VDFIFG~a----------~avfq~c~i~ 402 (548)
T PLN02301 385 VDFIFGNA----------AVVFQNCKIV 402 (548)
T ss_pred cceecccc----------eeEEeccEEE
No 63
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=21.14 E-value=6.8e+02 Score=23.33 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=0.0
Q ss_pred cEEEEeeEEeCCCCceEEEeEEEEEcCCCCCCCCeEEecceecEEEEeeEEecCCceEEecCCCeeEEEEeCeEEcCCCc
Q 047599 2 HGSITYITSRDSKNFHFNTFKINIQAPENSPHTDGIHIANSNNIQILNSEISTGDDCASMDPGSQNVNISSNVKIWPSNV 81 (165)
Q Consensus 2 nv~i~gitl~nsp~w~i~i~~v~I~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~g~~ 81 (165)
++..++|+|+|+ ++....-.-.+-+.+ ..+.+++|.|...-|=+-..++ .-..+ +|++.+.
T Consensus 318 ~F~a~nitf~Nt-------------ag~~~~QAVAl~v~~-D~~~fy~c~~~G~QDTLy~~~~--Rqyy~-~C~I~Gt-- 378 (541)
T PLN02416 318 GFLARDITIENT-------------AGPEKHQAVALRVNA-DLVALYRCTINGYQDTLYVHSF--RQFYR-ECDIYGT-- 378 (541)
T ss_pred CeEEEeeEEEEC-------------CCCCCCceEEEEEcC-ccEEEEcceEecccchhccCCC--ceEEE-eeEEeec--
Q ss_pred ceEEEeecCCCCCCCCeeeEEEEeeEEe
Q 047599 82 ESISIRSLGGTPNEKEAREITVQNCNLK 109 (165)
Q Consensus 82 hGisiGS~g~~~~~~~v~nV~v~n~~~~ 109 (165)
==+=+|.. ...|+||.+.
T Consensus 379 VDFIFG~a----------~avfq~c~i~ 396 (541)
T PLN02416 379 IDYIFGNA----------AVVFQACNIV 396 (541)
T ss_pred cceeeccc----------eEEEeccEEE
No 64
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=20.99 E-value=2e+02 Score=26.48 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=10.3
Q ss_pred EeEEEEeEEEEecC
Q 047599 134 DKIELRDIDMACHG 147 (165)
Q Consensus 134 ~~i~~~dv~l~~~~ 147 (165)
.++.|.+-+|...+
T Consensus 373 ~G~vf~~c~i~~~~ 386 (497)
T PLN02698 373 TGFSLQSCRIRTSS 386 (497)
T ss_pred ceEEEEeeEEecCC
Confidence 57888888887654
No 65
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=20.39 E-value=2.1e+02 Score=26.62 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=21.3
Q ss_pred cEEEEeeEEecCCceEEecCCCeeEEEEeCeEEcC
Q 047599 44 NIQILNSEISTGDDCASMDPGSQNVNISSNVKIWP 78 (165)
Q Consensus 44 nV~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~ 78 (165)
|++|+|..=..+--+||+........+. +|.|.+
T Consensus 318 nitf~Ntag~~~~QAVAlrv~~Dr~~f~-~c~~~G 351 (539)
T PLN02995 318 GITFRNTAGPAKGQAVALRSSSDLSIFY-KCSIEG 351 (539)
T ss_pred eeEEEeCCCCCCCceEEEEEcCCceeEE-cceEec
Confidence 4444443322234588888888788888 888843
No 66
>PLN02671 pectinesterase
Probab=20.22 E-value=6.1e+02 Score=22.40 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=36.4
Q ss_pred EEEEeeEEecCCceEEecCCCeeEEEEeCeEEcCC-Ccce-EEEeecCCCCCCCCeeeEEEEeeEEeCCCCC--c--ccC
Q 047599 45 IQILNSEISTGDDCASMDPGSQNVNISSNVKIWPS-NVES-ISIRSLGGTPNEKEAREITVQNCNLKGTSNG--G--TSS 118 (165)
Q Consensus 45 V~I~n~~i~~gDDcIaiks~s~nI~i~~n~~~~~g-~~hG-isiGS~g~~~~~~~v~nV~v~n~~~~~t~~g--G--t~~ 118 (165)
-.+++|+|.-.=|-|- |.-..+++ +|.+..- ...| |.--+- .....-.-..|.||++.+...- | ...
T Consensus 209 ~yf~~CyIeG~VDFIF---G~g~A~Fe-~C~I~s~~~~~G~ITA~~r---~~~~~~~GfvF~~C~itg~g~vyLGRPW~~ 281 (359)
T PLN02671 209 HYFYQCYIQGSVDFIF---GNAKSLYQ-DCVIQSTAKRSGAIAAHHR---DSPTEDTGFSFVNCVINGTGKIYLGRAWGN 281 (359)
T ss_pred EEEEecEEEEeccEEe---cceeEEEe-ccEEEEecCCCeEEEeecc---CCCCCCccEEEEccEEccCccEEEeCCCCC
Confidence 4455555554444443 12356777 8888431 0023 222111 0112235678999999763210 1 112
Q ss_pred ccceEEEEcC
Q 047599 119 TKVAVDLQCS 128 (165)
Q Consensus 119 ~~~a~~l~c~ 128 (165)
....+.+.|.
T Consensus 282 yarvVf~~t~ 291 (359)
T PLN02671 282 YSRTVYSNCF 291 (359)
T ss_pred CceEEEEecc
Confidence 3456667664
Done!