Query 047603
Match_columns 259
No_of_seqs 166 out of 621
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 12:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00451 ZnF_U1 U1-like zinc 98.6 2.6E-08 5.5E-13 63.2 2.7 33 210-242 2-34 (35)
2 PF12874 zf-met: Zinc-finger o 98.6 2.8E-08 6E-13 58.6 1.8 25 212-236 1-25 (25)
3 smart00451 ZnF_U1 U1-like zinc 98.4 1.3E-07 2.7E-12 59.9 2.2 32 119-150 3-34 (35)
4 KOG3792 Transcription factor N 98.4 7.2E-08 1.6E-12 96.8 0.7 112 120-241 194-389 (816)
5 PF12171 zf-C2H2_jaz: Zinc-fin 98.4 2.1E-07 4.6E-12 56.2 2.1 27 211-237 1-27 (27)
6 PF12874 zf-met: Zinc-finger o 98.3 2.1E-07 4.7E-12 54.8 0.6 25 120-144 1-25 (25)
7 PF12171 zf-C2H2_jaz: Zinc-fin 97.9 2.6E-06 5.7E-11 51.3 0.7 26 120-145 2-27 (27)
8 PF06220 zf-U1: U1 zinc finger 97.7 4.9E-05 1.1E-09 49.9 3.4 32 211-242 3-36 (38)
9 PF06220 zf-U1: U1 zinc finger 97.6 5.1E-05 1.1E-09 49.8 3.0 34 118-151 2-37 (38)
10 KOG4727 U1-like Zn-finger prot 97.6 3.5E-05 7.6E-10 66.0 2.4 37 207-243 71-107 (193)
11 KOG2785 C2H2-type Zn-finger pr 97.5 0.0001 2.2E-09 70.1 3.7 76 170-245 3-102 (390)
12 KOG4727 U1-like Zn-finger prot 96.8 0.00073 1.6E-08 58.0 2.4 34 118-151 74-107 (193)
13 PF12756 zf-C2H2_2: C2H2 type 96.8 0.00038 8.2E-09 52.6 0.5 68 173-241 2-80 (100)
14 KOG3576 Ovo and related transc 96.5 0.0097 2.1E-07 52.9 7.5 106 120-233 118-234 (267)
15 KOG3408 U1-like Zn-finger-cont 96.5 0.0024 5.1E-08 52.1 3.3 46 208-253 54-106 (129)
16 KOG3608 Zn finger proteins [Ge 96.4 0.0036 7.8E-08 59.5 4.5 106 122-238 240-378 (467)
17 PLN02748 tRNA dimethylallyltra 96.4 0.0033 7.2E-08 62.0 3.9 40 211-250 418-458 (468)
18 PF12756 zf-C2H2_2: C2H2 type 96.3 0.0016 3.4E-08 49.2 1.0 75 122-198 2-78 (100)
19 PF14968 CCDC84: Coiled coil p 96.2 0.0031 6.8E-08 59.7 2.9 70 172-244 1-97 (336)
20 KOG0717 Molecular chaperone (D 96.2 0.0038 8.3E-08 61.0 3.2 42 209-250 290-331 (508)
21 KOG2785 C2H2-type Zn-finger pr 96.0 0.0056 1.2E-07 58.5 3.6 81 120-200 4-98 (390)
22 PF14968 CCDC84: Coiled coil p 95.9 0.0037 8E-08 59.2 1.7 78 121-201 1-95 (336)
23 KOG3792 Transcription factor N 95.9 0.0018 4E-08 65.9 -0.5 73 171-243 194-267 (816)
24 KOG3454 U1 snRNP-specific prot 95.7 0.0051 1.1E-07 52.5 1.6 34 119-152 3-38 (165)
25 KOG1074 Transcriptional repres 95.4 0.0029 6.2E-08 65.5 -1.1 82 120-233 606-690 (958)
26 PF07535 zf-DBF: DBF zinc fing 95.3 0.012 2.7E-07 40.7 2.0 27 211-240 5-31 (49)
27 smart00586 ZnF_DBF Zinc finger 95.2 0.0086 1.9E-07 41.5 1.1 32 211-245 5-36 (49)
28 KOG2462 C2H2-type Zn-finger pr 94.7 0.14 3E-06 47.3 7.7 91 118-232 129-236 (279)
29 KOG2462 C2H2-type Zn-finger pr 94.6 0.02 4.4E-07 52.6 2.2 100 120-234 162-266 (279)
30 KOG0227 Splicing factor 3a, su 94.5 0.079 1.7E-06 46.6 5.3 36 209-244 51-86 (222)
31 COG5188 PRP9 Splicing factor 3 94.4 0.029 6.3E-07 53.4 2.6 32 168-199 236-267 (470)
32 KOG3408 U1-like Zn-finger-cont 94.3 0.023 5E-07 46.4 1.6 35 119-153 57-91 (129)
33 KOG3993 Transcription factor ( 94.1 0.061 1.3E-06 52.3 4.4 90 118-232 266-377 (500)
34 KOG0717 Molecular chaperone (D 94.0 0.025 5.4E-07 55.5 1.5 33 120-152 293-325 (508)
35 KOG1146 Homeobox protein [Gene 93.9 0.056 1.2E-06 58.7 4.0 121 119-239 464-617 (1406)
36 KOG3608 Zn finger proteins [Ge 93.5 0.033 7.1E-07 53.1 1.3 97 122-232 210-313 (467)
37 KOG0150 Spliceosomal protein F 93.5 0.036 7.9E-07 51.7 1.6 34 118-151 9-43 (336)
38 KOG3623 Homeobox transcription 93.5 0.051 1.1E-06 56.0 2.7 101 118-242 239-340 (1007)
39 PF13894 zf-C2H2_4: C2H2-type 93.3 0.046 1E-06 30.5 1.2 21 212-232 1-21 (24)
40 KOG4722 Zn-finger protein [Gen 93.2 0.053 1.1E-06 52.8 2.2 34 211-244 493-526 (672)
41 PF04988 AKAP95: A-kinase anch 93.2 0.16 3.4E-06 43.5 4.8 74 171-244 1-125 (165)
42 PF13894 zf-C2H2_4: C2H2-type 93.1 0.06 1.3E-06 30.0 1.5 19 122-140 3-21 (24)
43 PHA00733 hypothetical protein 93.0 0.079 1.7E-06 43.5 2.7 80 120-232 41-120 (128)
44 KOG3576 Ovo and related transc 93.0 0.097 2.1E-06 46.7 3.4 18 122-139 148-165 (267)
45 PF07535 zf-DBF: DBF zinc fing 92.9 0.065 1.4E-06 37.1 1.7 27 119-148 5-31 (49)
46 KOG3032 Uncharacterized conser 92.8 0.1 2.2E-06 47.2 3.1 36 208-244 32-67 (264)
47 smart00586 ZnF_DBF Zinc finger 92.7 0.047 1E-06 37.8 0.8 28 119-149 5-32 (49)
48 PLN02748 tRNA dimethylallyltra 92.6 0.1 2.2E-06 51.7 3.2 33 120-152 419-452 (468)
49 PF00096 zf-C2H2: Zinc finger, 92.4 0.064 1.4E-06 30.3 1.0 22 212-233 1-22 (23)
50 KOG3623 Homeobox transcription 92.3 0.089 1.9E-06 54.3 2.5 83 116-234 890-973 (1007)
51 PF13912 zf-C2H2_6: C2H2-type 92.3 0.081 1.8E-06 31.1 1.4 22 212-233 2-23 (27)
52 COG5112 UFD2 U1-like Zn-finger 91.6 0.11 2.3E-06 41.7 1.8 36 209-244 53-88 (126)
53 COG5112 UFD2 U1-like Zn-finger 91.4 0.12 2.6E-06 41.4 1.9 35 119-153 55-89 (126)
54 PF00096 zf-C2H2: Zinc finger, 91.1 0.1 2.2E-06 29.4 0.9 19 122-140 3-21 (23)
55 COG5188 PRP9 Splicing factor 3 90.3 0.13 2.7E-06 49.2 1.2 36 210-245 237-272 (470)
56 COG5246 PRP11 Splicing factor 90.2 0.24 5.2E-06 43.3 2.7 36 208-243 50-85 (222)
57 KOG4722 Zn-finger protein [Gen 90.0 0.23 4.9E-06 48.6 2.7 31 172-202 495-525 (672)
58 PF13912 zf-C2H2_6: C2H2-type 89.6 0.21 4.6E-06 29.3 1.4 20 121-140 3-22 (27)
59 smart00355 ZnF_C2H2 zinc finge 88.7 0.38 8.3E-06 26.8 2.0 21 212-232 1-21 (26)
60 KOG0227 Splicing factor 3a, su 88.5 0.26 5.6E-06 43.4 1.7 35 118-152 52-86 (222)
61 KOG3454 U1 snRNP-specific prot 88.0 0.36 7.9E-06 41.3 2.3 32 170-201 3-36 (165)
62 PF04988 AKAP95: A-kinase anch 87.7 1.1 2.4E-05 38.4 5.1 82 120-201 1-123 (165)
63 KOG0150 Spliceosomal protein F 87.3 0.4 8.6E-06 45.0 2.3 32 169-200 9-41 (336)
64 KOG3032 Uncharacterized conser 87.1 0.48 1E-05 42.9 2.6 34 119-153 35-68 (264)
65 smart00355 ZnF_C2H2 zinc finge 87.1 0.5 1.1E-05 26.3 1.9 19 122-140 3-21 (26)
66 COG5136 U1 snRNP-specific prot 86.4 0.17 3.6E-06 43.4 -0.6 33 119-151 3-37 (188)
67 KOG3993 Transcription factor ( 85.3 0.51 1.1E-05 46.1 1.9 70 120-191 295-377 (500)
68 KOG1074 Transcriptional repres 84.3 0.47 1E-05 49.8 1.3 51 172-235 607-657 (958)
69 COG5246 PRP11 Splicing factor 83.5 0.85 1.8E-05 40.0 2.4 34 120-153 54-87 (222)
70 KOG1146 Homeobox protein [Gene 83.4 0.93 2E-05 49.7 3.1 78 169-246 464-553 (1406)
71 PHA00732 hypothetical protein 81.1 1.8 4E-05 32.6 3.2 46 171-234 2-47 (79)
72 KOG2837 Protein containing a U 78.5 0.46 9.9E-06 43.9 -1.1 36 211-246 25-60 (309)
73 PF13909 zf-H2C2_5: C2H2-type 78.1 1.3 2.8E-05 25.3 1.1 20 212-232 1-20 (24)
74 PF05605 zf-Di19: Drought indu 76.3 3.8 8.1E-05 28.2 3.3 48 120-191 3-50 (54)
75 PTZ00448 hypothetical protein; 75.4 2.7 5.8E-05 40.5 3.2 34 210-243 313-346 (373)
76 KOG2893 Zn finger protein [Gen 73.3 0.82 1.8E-05 41.8 -0.8 56 170-243 10-65 (341)
77 PF05605 zf-Di19: Drought indu 73.2 6.4 0.00014 27.1 3.9 50 170-233 2-51 (54)
78 PF12907 zf-met2: Zinc-binding 72.2 1.8 3.9E-05 28.7 0.8 25 121-146 3-30 (40)
79 PHA00733 hypothetical protein 71.7 7.8 0.00017 31.7 4.7 47 120-191 73-120 (128)
80 PTZ00448 hypothetical protein; 68.3 5.1 0.00011 38.7 3.2 33 170-202 314-346 (373)
81 PHA02768 hypothetical protein; 60.6 5.5 0.00012 28.2 1.5 23 211-233 5-27 (55)
82 KOG2893 Zn finger protein [Gen 60.1 5.3 0.00011 36.6 1.6 27 115-141 6-32 (341)
83 PF11931 DUF3449: Domain of un 59.9 3 6.4E-05 36.9 0.0 37 207-243 97-134 (196)
84 PLN03086 PRLI-interacting fact 58.6 19 0.00042 36.7 5.5 23 118-141 451-474 (567)
85 PF09237 GAGA: GAGA factor; I 53.4 9 0.00019 27.0 1.5 21 120-140 25-45 (54)
86 PF09237 GAGA: GAGA factor; I 52.6 9.2 0.0002 26.9 1.5 21 212-232 25-45 (54)
87 PF12907 zf-met2: Zinc-binding 52.6 7.6 0.00016 25.8 1.0 23 212-234 2-27 (40)
88 PHA02768 hypothetical protein; 52.4 9.2 0.0002 27.1 1.5 24 120-145 6-29 (55)
89 PHA00616 hypothetical protein 52.3 7 0.00015 26.5 0.8 21 212-232 2-22 (44)
90 PF12013 DUF3505: Protein of u 48.7 23 0.00051 27.6 3.5 62 171-233 12-106 (109)
91 KOG2837 Protein containing a U 47.8 2.5 5.5E-05 39.2 -2.5 36 118-153 24-59 (309)
92 PF03194 LUC7: LUC7 N_terminus 46.9 10 0.00022 34.6 1.3 28 121-148 192-222 (254)
93 PF05477 SURF2: Surfeit locus 45.8 35 0.00075 31.2 4.5 81 122-202 28-112 (244)
94 COG5136 U1 snRNP-specific prot 45.5 7.6 0.00017 33.4 0.2 31 170-200 3-35 (188)
95 COG5067 DBF4 Protein kinase es 44.7 7 0.00015 38.1 -0.1 29 211-242 422-450 (468)
96 KOG4167 Predicted DNA-binding 44.4 34 0.00074 36.0 4.7 48 101-150 773-821 (907)
97 PF11931 DUF3449: Domain of un 43.8 7.6 0.00017 34.3 0.0 39 115-153 96-136 (196)
98 PHA00732 hypothetical protein 43.2 19 0.00041 27.1 2.1 21 212-232 2-22 (79)
99 smart00734 ZnF_Rad18 Rad18-lik 43.0 19 0.00042 21.3 1.7 20 212-232 2-21 (26)
100 PF14379 Myb_CC_LHEQLE: MYB-CC 42.2 31 0.00068 24.1 2.8 20 15-34 2-21 (51)
101 PF05477 SURF2: Surfeit locus 41.9 48 0.001 30.3 4.8 79 169-247 24-116 (244)
102 PF13913 zf-C2HC_2: zinc-finge 41.7 20 0.00042 21.0 1.5 20 212-232 3-22 (25)
103 KOG2482 Predicted C2H2-type Zn 40.4 11 0.00024 36.2 0.5 68 171-238 145-222 (423)
104 KOG2505 Ankyrin repeat protein 38.5 35 0.00076 34.5 3.6 33 210-242 65-97 (591)
105 KOG2505 Ankyrin repeat protein 38.4 21 0.00046 36.0 2.1 32 120-151 67-98 (591)
106 KOG2186 Cell growth-regulating 37.4 19 0.0004 33.3 1.4 69 169-240 28-108 (276)
107 KOG2384 Major histocompatibili 35.7 6 0.00013 35.2 -1.9 69 172-244 38-116 (223)
108 KOG2384 Major histocompatibili 34.8 61 0.0013 29.0 4.2 77 121-201 38-114 (223)
109 COG5236 Uncharacterized conser 34.6 48 0.001 32.1 3.7 74 119-192 151-242 (493)
110 PF04780 DUF629: Protein of un 33.9 40 0.00087 33.6 3.3 60 182-242 22-87 (466)
111 PF10537 WAC_Acf1_DNA_bd: ATP- 31.0 44 0.00096 26.4 2.5 27 13-39 39-65 (102)
112 PF03194 LUC7: LUC7 N_terminus 30.0 29 0.00062 31.7 1.4 33 171-203 191-226 (254)
113 KOG2636 Splicing factor 3a, su 29.7 34 0.00074 34.0 1.9 40 114-153 244-283 (497)
114 smart00250 PLEC Plectin repeat 28.3 27 0.00058 22.2 0.7 19 7-25 14-32 (38)
115 COG4049 Uncharacterized protei 28.1 26 0.00055 25.2 0.6 22 211-232 17-38 (65)
116 KOG2482 Predicted C2H2-type Zn 26.9 70 0.0015 31.0 3.4 123 117-240 193-363 (423)
117 KOG2231 Predicted E3 ubiquitin 25.4 42 0.00091 35.0 1.8 17 179-195 158-174 (669)
118 KOG0796 Spliceosome subunit [R 25.2 32 0.00069 32.6 0.8 28 121-148 188-218 (319)
119 PF12013 DUF3505: Protein of u 23.2 1.5E+02 0.0033 22.9 4.3 72 120-192 11-106 (109)
120 KOG1994 Predicted RNA binding 22.9 38 0.00083 30.8 0.9 24 119-142 239-262 (268)
121 PF04959 ARS2: Arsenite-resist 22.0 52 0.0011 29.4 1.5 32 120-152 77-109 (214)
122 PRK10204 hypothetical protein; 20.8 74 0.0016 22.3 1.7 20 12-31 34-53 (55)
123 COG5200 LUC7 U1 snRNP componen 20.0 46 0.001 30.0 0.8 29 121-149 187-218 (258)
No 1
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=98.61 E-value=2.6e-08 Score=63.15 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=30.5
Q ss_pred CcccCCccccccCCHHHHHHhhcchHHHHHHHH
Q 047603 210 EQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYE 242 (259)
Q Consensus 210 ~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~ 242 (259)
..|||++|++.|++...+.+|++|++|+.+++.
T Consensus 2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~ 34 (35)
T smart00451 2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34 (35)
T ss_pred cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence 358999999999999999999999999999864
No 2
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=98.57 E-value=2.8e-08 Score=58.63 Aligned_cols=25 Identities=24% Similarity=0.681 Sum_probs=24.2
Q ss_pred ccCCccccccCCHHHHHHhhcchHH
Q 047603 212 KWCKLCDVWCPNGDAFKMHLDGKNH 236 (259)
Q Consensus 212 ~~C~lCnV~~~Se~~m~~HL~GkKH 236 (259)
|+|++|++.|+|+.+|.+|++|++|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 6899999999999999999999998
No 3
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=98.42 E-value=1.3e-07 Score=59.92 Aligned_cols=32 Identities=31% Similarity=0.786 Sum_probs=29.6
Q ss_pred CCCCCCCcccCCCHHHHHHHhcCCchHHHHHH
Q 047603 119 SNFCSICHVPCSSAFNYNQHLKGRKHKAKLQE 150 (259)
Q Consensus 119 ~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~ 150 (259)
.+||++|+++|++...+.+|+.|++|+.+++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~ 34 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence 47899999999999999999999999999863
No 4
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=98.39 E-value=7.2e-08 Score=96.84 Aligned_cols=112 Identities=25% Similarity=0.408 Sum_probs=89.5
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCcccccccc-ccCCcccccccccCccCCHHHHHHHhchhhHHHH
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLV-KVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKAL 198 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~-~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~ 198 (259)
.||++|++.|+..+.+..|+.|-+|+++.. .+-.. +.-...++|+.|-++|++.+.+..|+++.+|..+
T Consensus 194 ~~~kw~k~~a~G~qs~re~lr~~r~l~krv----------pt~~~~kgw~~el~cEksi~tcs~pd~~g~alRrv~ec~~ 263 (816)
T KOG3792|consen 194 HYCKWCKISAAGPQTYREHLRGQKHLKKEV----------PTNGPLKGWPLELHCEKSIVTCSGPDAYGAALRRVKECKV 263 (816)
T ss_pred hhhHHHHHhccccHHHHHHHHHHHHHHhcc----------CCCCCcccchHHHHHHHhhccccCccchHHHHHHHHHhhh
Confidence 579999999999999999999999998762 11101 1113367899999999999999999999999998
Q ss_pred HHHhhh-------------------c------------------------------c-----------------------
Q 047603 199 QRAKCT-------------------L------------------------------K----------------------- 206 (259)
Q Consensus 199 ~k~~e~-------------------l------------------------------~----------------------- 206 (259)
.++... + +
T Consensus 264 skL~~k~G~gi~d~cek~~tds~~~le~qqrEdit~Saq~A~Rl~aagq~~kvl~mdplp~~~p~~~~a~~~~~~~kpvg 343 (816)
T KOG3792|consen 264 SKLHKKLGKGIPDPCEKDATDSLGQLEAQQREDITASAQHALRLAAAGQLTKVLGMDPLPSGKPAQPNAMAAASEVKPVG 343 (816)
T ss_pred hcccccCCCCCCCccccccccCccchhhcccCccchhhhhhhcchhcccchhhhccCcCccccccccccccccccccCCc
Confidence 776310 0 0
Q ss_pred -----------CCCCcccCCccccccCCHHHHHHhhcchHHHHHHH
Q 047603 207 -----------GGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLY 241 (259)
Q Consensus 207 -----------g~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk 241 (259)
|+.-.|.|.+|+..|+....-.+||+|.||+..++
T Consensus 344 eE~v~Eekd~~gK~~~f~cKlcdckf~d~nak~mhl~grRhrLQYk 389 (816)
T KOG3792|consen 344 EEYVEEEKDPEGKLLRFHCKLCDCKFNDPNAKEMHLKGRRHRLQYK 389 (816)
T ss_pred ccccccccCcccchHhhhhhhhcCCCCCcchHHhhhhcccccceec
Confidence 01127889999999999999999999999998777
No 5
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=98.37 E-value=2.1e-07 Score=56.19 Aligned_cols=27 Identities=30% Similarity=0.696 Sum_probs=25.3
Q ss_pred cccCCccccccCCHHHHHHhhcchHHH
Q 047603 211 QKWCKLCDVWCPNGDAFKMHLDGKNHI 237 (259)
Q Consensus 211 ~~~C~lCnV~~~Se~~m~~HL~GkKH~ 237 (259)
.|||.+|+..|+++.+|.+|++|++|+
T Consensus 1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 1 QFYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence 489999999999999999999999996
No 6
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=98.28 E-value=2.1e-07 Score=54.77 Aligned_cols=25 Identities=40% Similarity=0.784 Sum_probs=23.7
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCch
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKH 144 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKH 144 (259)
+||+||+++|+++..|++|+.|++|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 3599999999999999999999998
No 7
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=97.94 E-value=2.6e-06 Score=51.33 Aligned_cols=26 Identities=38% Similarity=0.673 Sum_probs=24.9
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCchH
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKHK 145 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKHk 145 (259)
+||.+|+..|+++.++.+|+.|++|+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCcccCCCCcCCHHHHHHHHccCCCC
Confidence 67999999999999999999999996
No 8
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=97.67 E-value=4.9e-05 Score=49.86 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=20.5
Q ss_pred cccCCcccccc--CCHHHHHHhhcchHHHHHHHH
Q 047603 211 QKWCKLCDVWC--PNGDAFKMHLDGKNHILRLYE 242 (259)
Q Consensus 211 ~~~C~lCnV~~--~Se~~m~~HL~GkKH~~~lk~ 242 (259)
.+||+.|++.+ ++...-..|..|++|+.++++
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~ 36 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR 36 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence 58999999999 455677899999999999875
No 9
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=97.63 E-value=5.1e-05 Score=49.78 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=21.2
Q ss_pred CCCCCCCCcccC--CCHHHHHHHhcCCchHHHHHHh
Q 047603 118 DSNFCSICHVPC--SSAFNYNQHLKGRKHKAKLQEL 151 (259)
Q Consensus 118 ~~~~C~lC~V~~--tSe~~l~~Hl~GKKHkkk~~~l 151 (259)
++.||+.|++++ ++...-..|..|.+|+.+++..
T Consensus 2 ~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~ 37 (38)
T PF06220_consen 2 PRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRY 37 (38)
T ss_dssp -S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHH
T ss_pred cCeecccccceecCCChHHHHHhhccHHHHHHHHHh
Confidence 357899999999 4556779999999999998753
No 10
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]
Probab=97.60 E-value=3.5e-05 Score=65.99 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=33.2
Q ss_pred CCCCcccCCccccccCCHHHHHHhhcchHHHHHHHHH
Q 047603 207 GGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEI 243 (259)
Q Consensus 207 g~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~ 243 (259)
+..+.|||.||+..+....+|..|++|++|+.++--.
T Consensus 71 sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms 107 (193)
T KOG4727|consen 71 SQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS 107 (193)
T ss_pred cccCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence 4466899999999999999999999999999998654
No 11
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=97.45 E-value=0.0001 Score=70.12 Aligned_cols=76 Identities=21% Similarity=0.396 Sum_probs=63.4
Q ss_pred ccccccccCccCCHHHHHHHhchhhHHHHHHHh---------hhc---------------cCCCCcccCCccccccCCHH
Q 047603 170 QTWCRLCNIGFSSEELFRLHLNAKKHKALQRAK---------CTL---------------KGGGEQKWCKLCDVWCPNGD 225 (259)
Q Consensus 170 ~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~---------e~l---------------~g~~~~~~C~lCnV~~~Se~ 225 (259)
.+.|..|+|.|.+.+.-..|++.-.|+-++|-+ +.+ ......++|.+|+..+.|..
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~ 82 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK 82 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence 467999999999999999999999999987643 111 01234777999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHH
Q 047603 226 AFKMHLDGKNHILRLYEIEK 245 (259)
Q Consensus 226 ~m~~HL~GkKH~~~lk~~~~ 245 (259)
.+..||+.++|..++.+...
T Consensus 83 a~~~hl~Sk~h~~~~~~~~r 102 (390)
T KOG2785|consen 83 AHENHLKSKKHVENLSNHQR 102 (390)
T ss_pred hHHHHHHHhhcchhhhhhhc
Confidence 99999999999999988653
No 12
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]
Probab=96.82 E-value=0.00073 Score=58.05 Aligned_cols=34 Identities=24% Similarity=0.663 Sum_probs=30.8
Q ss_pred CCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHh
Q 047603 118 DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQEL 151 (259)
Q Consensus 118 ~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l 151 (259)
..+||+||+.++-...+|.+|++||+|+.++..+
T Consensus 74 ~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms 107 (193)
T KOG4727|consen 74 GGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS 107 (193)
T ss_pred CceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence 3488999999999999999999999999999754
No 13
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.80 E-value=0.00038 Score=52.60 Aligned_cols=68 Identities=26% Similarity=0.377 Sum_probs=26.3
Q ss_pred cccccCccCCHHHHHHHhchhhHHHHHHHhhh----------ccC-CCCcccCCccccccCCHHHHHHhhcchHHHHHHH
Q 047603 173 CRLCNIGFSSEELFRLHLNAKKHKALQRAKCT----------LKG-GGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLY 241 (259)
Q Consensus 173 C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~----------l~g-~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk 241 (259)
|.+|+..|++...+..|+. ..|......... +.. ....+.|.+|+..|.+...+..||+.+.|.....
T Consensus 2 C~~C~~~f~~~~~l~~H~~-~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~ 80 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMK-KKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKHHKKRNS 80 (100)
T ss_dssp ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred ccccccccccccccccccc-cccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence 8899999999999999995 566654321111 111 1235779999999999999999999999988643
No 14
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=96.54 E-value=0.0097 Score=52.91 Aligned_cols=106 Identities=20% Similarity=0.329 Sum_probs=65.5
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh--cC--Cccc--cccc-cccCCcccccccccCccCCHHHHHHHhc-
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL--DG--NSLV--KMSL-VKVGEKQTWCRLCNIGFSSEELFRLHLN- 191 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~--~~--~~~~--~p~~-~~~~~~~~~C~lCnv~~~S~~~l~sHl~- 191 (259)
+.|.||...|.=+..|+.|+.-- -.--+.|-. ++ +..- +-.. .-.+..++.|.+|+..|+..-.+++|++
T Consensus 118 ftCrvCgK~F~lQRmlnrh~kch--~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~k 195 (267)
T KOG3576|consen 118 FTCRVCGKKFGLQRMLNRHLKCH--SDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKK 195 (267)
T ss_pred eeeehhhhhhhHHHHHHHHhhhc--cHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHH
Confidence 44999999999999999998643 222222211 11 1000 0000 0112346779999999998888888876
Q ss_pred --hhhHHHHHHHhhhccCCCCccc-CCccccccCCHHHHHHhhcc
Q 047603 192 --AKKHKALQRAKCTLKGGGEQKW-CKLCDVWCPNGDAFKMHLDG 233 (259)
Q Consensus 192 --GkKH~~~~k~~e~l~g~~~~~~-C~lCnV~~~Se~~m~~HL~G 233 (259)
|-.|+-..+ ...+.+| |+-|..+-....++..|++-
T Consensus 196 vhgv~~~yayk------err~kl~vcedcg~t~~~~e~~~~h~~~ 234 (267)
T KOG3576|consen 196 VHGVQHQYAYK------ERRAKLYVCEDCGYTSERPEVYYLHLKL 234 (267)
T ss_pred HcCchHHHHHH------HhhhheeeecccCCCCCChhHHHHHHHh
Confidence 222222111 2233455 99999999999999999864
No 15
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=96.52 E-value=0.0024 Score=52.06 Aligned_cols=46 Identities=33% Similarity=0.580 Sum_probs=39.7
Q ss_pred CCCcccCCccccccCCHHHHHHhhcchHHHHHHHHH-------HHHHhhccCC
Q 047603 208 GGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEI-------EKNRRAENLG 253 (259)
Q Consensus 208 ~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~-------~~~~~~~~~g 253 (259)
+.+.|||-.|.-.|-++.+|..|.+++.|+++|+++ ++...+-|.|
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~~PySQeeAe~A~G~g 106 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELREVPYSQEEAEAAAGMG 106 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcccCCccHHHHHHhccCC
Confidence 356899999999999999999999999999999997 3446666666
No 16
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=96.44 E-value=0.0036 Score=59.49 Aligned_cols=106 Identities=22% Similarity=0.395 Sum_probs=67.6
Q ss_pred CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccc-----cc-------cccCCcccccccccCccCCHHHHHHH
Q 047603 122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKM-----SL-------VKVGEKQTWCRLCNIGFSSEELFRLH 189 (259)
Q Consensus 122 C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p-----~~-------~~~~~~~~~C~lCnv~~~S~~~l~sH 189 (259)
|+.|...|.++..|.+|.. +|-.-.+ -++..+ +. .-..+.+|.|+.|+..|-.+.+|+.|
T Consensus 240 C~~C~KrFaTeklL~~Hv~--rHvn~yk------CplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH 311 (467)
T KOG3608|consen 240 CAQCFKRFATEKLLKSHVV--RHVNCYK------CPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKH 311 (467)
T ss_pred HHHHHHHHhHHHHHHHHHH--Hhhhccc------ccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHH
Confidence 8888888888887777764 4432221 000000 00 00125688899999999999999988
Q ss_pred hchhhHHHHH------------HHhhhc--------cCCCCccc-CCccccccCCHHHHHHhhcchHHHH
Q 047603 190 LNAKKHKALQ------------RAKCTL--------KGGGEQKW-CKLCDVWCPNGDAFKMHLDGKNHIL 238 (259)
Q Consensus 190 l~GkKH~~~~------------k~~e~l--------~g~~~~~~-C~lCnV~~~Se~~m~~HL~GkKH~~ 238 (259)
+. -|-+.. +.+.+| .|.....| |-+|+..|++...+..||. |||+-
T Consensus 312 ~~--~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~-kkH~f 378 (467)
T KOG3608|consen 312 VQ--VHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLM-KKHGF 378 (467)
T ss_pred HH--hccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHH-Hhhcc
Confidence 76 333211 111111 25556666 9999999999999999997 55654
No 17
>PLN02748 tRNA dimethylallyltransferase
Probab=96.36 E-value=0.0033 Score=62.04 Aligned_cols=40 Identities=18% Similarity=0.408 Sum_probs=35.0
Q ss_pred cccCCcccc-ccCCHHHHHHhhcchHHHHHHHHHHHHHhhc
Q 047603 211 QKWCKLCDV-WCPNGDAFKMHLDGKNHILRLYEIEKNRRAE 250 (259)
Q Consensus 211 ~~~C~lCnV-~~~Se~~m~~HL~GkKH~~~lk~~~~~~~~~ 250 (259)
.|.|++|+. ++..+.+.++|++|++|+++++...++...+
T Consensus 418 ~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~~~~~ 458 (468)
T PLN02748 418 QYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQKQTQK 458 (468)
T ss_pred cccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhhhhcc
Confidence 556999998 8999999999999999999999887765544
No 18
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.30 E-value=0.0016 Score=49.18 Aligned_cols=75 Identities=33% Similarity=0.503 Sum_probs=25.3
Q ss_pred CCCCcccCCCHHHHHHHhcCCchHHHHHHhHh--cCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHH
Q 047603 122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELKL--DGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKAL 198 (259)
Q Consensus 122 C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~--~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~ 198 (259)
|.+|+..|++...+..|+. ..|.-.+..... ....+. .-........+.|.+|+..|.+...+..|+..+.|...
T Consensus 2 C~~C~~~f~~~~~l~~H~~-~~H~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~ 78 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMK-KKHGFDIPDQKYLVDPNRLL-NYLRKKVKESFRCPYCNKTFRSREALQEHMRSKHHKKR 78 (100)
T ss_dssp -------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTTTTC-
T ss_pred ccccccccccccccccccc-cccccccccccccccccccc-cccccccCCCCCCCccCCCCcCHHHHHHHHcCccCCCc
Confidence 8999999999999999995 778766542111 001000 00001112247799999999999999999999989874
No 19
>PF14968 CCDC84: Coiled coil protein 84
Probab=96.23 E-value=0.0031 Score=59.68 Aligned_cols=70 Identities=23% Similarity=0.390 Sum_probs=53.3
Q ss_pred ccccccCccCCHHHHHHHhchhhHHHHHHHh-----hh-------cc---------CCCCcccCCccccccCCH------
Q 047603 172 WCRLCNIGFSSEELFRLHLNAKKHKALQRAK-----CT-------LK---------GGGEQKWCKLCDVWCPNG------ 224 (259)
Q Consensus 172 ~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~-----e~-------l~---------g~~~~~~C~lCnV~~~Se------ 224 (259)
||.+|+.+... -.-|.-+.+|+..+... .+ |. .....|||-.|++...-.
T Consensus 1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L~rf~~Kl~d~R~~lk~p~v~~~~~~~~~~fWC~fC~~ev~~~~s~~~~ 77 (336)
T PF14968_consen 1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFLSRFRSKLSDARFFLKKPSVLRYDPEHRNRFWCVFCDCEVREHDSSFAC 77 (336)
T ss_pred CcchhhCcccc---cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCccccceeEeeCccchhhhccchhhh
Confidence 79999986654 66888899999976542 11 11 134599999999877644
Q ss_pred HHHHHhhcchHHHHHHHHHH
Q 047603 225 DAFKMHLDGKNHILRLYEIE 244 (259)
Q Consensus 225 ~~m~~HL~GkKH~~~lk~~~ 244 (259)
..+..||.+..|+++++++.
T Consensus 78 ~~ai~HLaS~eH~k~vk~F~ 97 (336)
T PF14968_consen 78 GGAIEHLASPEHRKNVKKFW 97 (336)
T ss_pred ccHHhhcCCHHHHHHHHHHH
Confidence 36789999999999999983
No 20
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0038 Score=61.02 Aligned_cols=42 Identities=24% Similarity=0.440 Sum_probs=36.5
Q ss_pred CCcccCCccccccCCHHHHHHhhcchHHHHHHHHHHHHHhhc
Q 047603 209 GEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIEKNRRAE 250 (259)
Q Consensus 209 ~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~~~~~~~ 250 (259)
++.+||-+||.+|.|+.+|..|.++|||+.+|.++-+..+.+
T Consensus 290 ge~lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqemEEE 331 (508)
T KOG0717|consen 290 GEVLYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQEMEEE 331 (508)
T ss_pred CCceEEeeccccccchHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 345999999999999999999999999999999986554433
No 21
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=96.05 E-value=0.0056 Score=58.46 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=61.2
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccc-----------cccc--c-ccCCcccccccccCccCCHHH
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLV-----------KMSL--V-KVGEKQTWCRLCNIGFSSEEL 185 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~-----------~p~~--~-~~~~~~~~C~lCnv~~~S~~~ 185 (259)
+.|.-|+|.|.+...-..||..--|+=|++....+-.++. .... . ......++|.+|+-.+.|+..
T Consensus 4 ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~a 83 (390)
T KOG2785|consen 4 FTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPKA 83 (390)
T ss_pred ceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChhh
Confidence 4499999999999999999999999999875433222210 0000 0 122446789999999999999
Q ss_pred HHHHhchhhHHHHHH
Q 047603 186 FRLHLNAKKHKALQR 200 (259)
Q Consensus 186 l~sHl~GkKH~~~~k 200 (259)
+..|+..++|..++.
T Consensus 84 ~~~hl~Sk~h~~~~~ 98 (390)
T KOG2785|consen 84 HENHLKSKKHVENLS 98 (390)
T ss_pred HHHHHHHhhcchhhh
Confidence 999999999998653
No 22
>PF14968 CCDC84: Coiled coil protein 84
Probab=95.90 E-value=0.0037 Score=59.21 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=56.5
Q ss_pred CCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcC--------Ccccccccc---ccCCcccccccccCccCCH------
Q 047603 121 FCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDG--------NSLVKMSLV---KVGEKQTWCRLCNIGFSSE------ 183 (259)
Q Consensus 121 ~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~--------~~~~~p~~~---~~~~~~~~C~lCnv~~~S~------ 183 (259)
||.||+.+... -+-|..+++|++++..++..- ..+..|... ......|||-.|+....-.
T Consensus 1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L~rf~~Kl~d~R~~lk~p~v~~~~~~~~~~fWC~fC~~ev~~~~s~~~~ 77 (336)
T PF14968_consen 1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFLSRFRSKLSDARFFLKKPSVLRYDPEHRNRFWCVFCDCEVREHDSSFAC 77 (336)
T ss_pred CcchhhCcccc---cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCccccceeEeeCccchhhhccchhhh
Confidence 79999998765 688999999999999875421 113334421 1235589999999877532
Q ss_pred HHHHHHhchhhHHHHHHH
Q 047603 184 ELFRLHLNAKKHKALQRA 201 (259)
Q Consensus 184 ~~l~sHl~GkKH~~~~k~ 201 (259)
..+..|+.+..|+++++.
T Consensus 78 ~~ai~HLaS~eH~k~vk~ 95 (336)
T PF14968_consen 78 GGAIEHLASPEHRKNVKK 95 (336)
T ss_pred ccHHhhcCCHHHHHHHHH
Confidence 356799999999998765
No 23
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=95.88 E-value=0.0018 Score=65.86 Aligned_cols=73 Identities=23% Similarity=0.345 Sum_probs=59.4
Q ss_pred cccccccCccCCHHHHHHHhchhhHHHHHH-HhhhccCCCCcccCCccccccCCHHHHHHhhcchHHHHHHHHH
Q 047603 171 TWCRLCNIGFSSEELFRLHLNAKKHKALQR-AKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEI 243 (259)
Q Consensus 171 ~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k-~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~ 243 (259)
.||++|++.++....+..|++|.||+.+.. ....+++-...+.|+.|.++|++..-+..||++.+|.+..+-.
T Consensus 194 ~~~kw~k~~a~G~qs~re~lr~~r~l~krvpt~~~~kgw~~el~cEksi~tcs~pd~~g~alRrv~ec~~skL~ 267 (816)
T KOG3792|consen 194 HYCKWCKISAAGPQTYREHLRGQKHLKKEVPTNGPLKGWPLELHCEKSIVTCSGPDAYGAALRRVKECKVSKLH 267 (816)
T ss_pred hhhHHHHHhccccHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHhhccccCccchHHHHHHHHHhhhhccc
Confidence 379999999999999999999999998641 1111233344778999999999999999999999999876544
No 24
>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]
Probab=95.69 E-value=0.0051 Score=52.48 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=29.6
Q ss_pred CCCCCCCcccCC--CHHHHHHHhcCCchHHHHHHhH
Q 047603 119 SNFCSICHVPCS--SAFNYNQHLKGRKHKAKLQELK 152 (259)
Q Consensus 119 ~~~C~lC~V~~t--Se~~l~~Hl~GKKHkkk~~~l~ 152 (259)
+.||+.|++.+| |.++-..|+.|+||+.+++.+.
T Consensus 3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY 38 (165)
T KOG3454|consen 3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYY 38 (165)
T ss_pred cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHH
Confidence 577999997775 7889999999999999998654
No 25
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=95.40 E-value=0.0029 Score=65.51 Aligned_cols=82 Identities=26% Similarity=0.487 Sum_probs=67.4
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHHH
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQ 199 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~ 199 (259)
.-|-||.-.+.....|+-||. -|- +..+|.|+||+-.|+..-+|..|+.+-|-+--.
T Consensus 606 NqCiiC~rVlSC~saLqmHyr--tHt---------------------GERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~ 662 (958)
T KOG1074|consen 606 NQCIICLRVLSCPSALQMHYR--THT---------------------GERPFKCKICGRAFTTKGNLKAHMSVHKAKPPA 662 (958)
T ss_pred cceeeeeecccchhhhhhhhh--ccc---------------------CcCccccccccchhccccchhhcccccccCccc
Confidence 459999999999999999996 232 334789999999999999999999974433323
Q ss_pred HHhhhccCCCCcccCC---ccccccCCHHHHHHhhcc
Q 047603 200 RAKCTLKGGGEQKWCK---LCDVWCPNGDAFKMHLDG 233 (259)
Q Consensus 200 k~~e~l~g~~~~~~C~---lCnV~~~Se~~m~~HL~G 233 (259)
++ .+.|. ||.-.|+....+.+|++.
T Consensus 663 R~---------q~ScP~~~ic~~kftn~V~lpQhIri 690 (958)
T KOG1074|consen 663 RV---------QFSCPSTFICQKKFTNAVTLPQHIRI 690 (958)
T ss_pred cc---------cccCCchhhhcccccccccccceEEe
Confidence 32 57899 999999999999999875
No 26
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=95.25 E-value=0.012 Score=40.69 Aligned_cols=27 Identities=19% Similarity=0.403 Sum_probs=24.3
Q ss_pred cccCCccccccCCHHHHHHhhcchHHHHHH
Q 047603 211 QKWCKLCDVWCPNGDAFKMHLDGKNHILRL 240 (259)
Q Consensus 211 ~~~C~lCnV~~~Se~~m~~HL~GkKH~~~l 240 (259)
.-||+.|.+.+. .|..|+.+.+|+.=+
T Consensus 5 ~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA 31 (49)
T PF07535_consen 5 PGYCENCRVKYD---DLEEHIQSEKHRKFA 31 (49)
T ss_pred CccCccccchhh---hHHHHhCCHHHHHHH
Confidence 579999999998 699999999999865
No 27
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=95.20 E-value=0.0086 Score=41.45 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=26.8
Q ss_pred cccCCccccccCCHHHHHHhhcchHHHHHHHHHHH
Q 047603 211 QKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIEK 245 (259)
Q Consensus 211 ~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~~ 245 (259)
.-||+.|.+.|. .|..|+.+.+|+.=......
T Consensus 5 ~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~~~~N 36 (49)
T smart00586 5 PGYCENCREKYD---DLETHLLSEKHRRFAENNDN 36 (49)
T ss_pred CcccccHhHHHh---hHHHHhccHHHHHHHcCchh
Confidence 579999999998 88999999999986655433
No 28
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=94.66 E-value=0.14 Score=47.26 Aligned_cols=91 Identities=22% Similarity=0.474 Sum_probs=54.2
Q ss_pred CCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHH
Q 047603 118 DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKA 197 (259)
Q Consensus 118 ~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~ 197 (259)
+..-|.-|+....+-..|-.|-+ -|..-. ....+.|++|+..+.|.-.|..|++- |..
T Consensus 129 ~r~~c~eCgk~ysT~snLsrHkQ--~H~~~~------------------s~ka~~C~~C~K~YvSmpALkMHirT--H~l 186 (279)
T KOG2462|consen 129 PRYKCPECGKSYSTSSNLSRHKQ--THRSLD------------------SKKAFSCKYCGKVYVSMPALKMHIRT--HTL 186 (279)
T ss_pred Cceeccccccccccccccchhhc--cccccc------------------ccccccCCCCCceeeehHHHhhHhhc--cCC
Confidence 33449999999988888877644 222111 12244566666666555555555442 110
Q ss_pred HHHHhhh-----------ccC-----CCC-cccCCccccccCCHHHHHHhhc
Q 047603 198 LQRAKCT-----------LKG-----GGE-QKWCKLCDVWCPNGDAFKMHLD 232 (259)
Q Consensus 198 ~~k~~e~-----------l~g-----~~~-~~~C~lCnV~~~Se~~m~~HL~ 232 (259)
.-.+. |.| .++ .|-|..|+..|-..++|+.||+
T Consensus 187 --~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQ 236 (279)
T KOG2462|consen 187 --PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQ 236 (279)
T ss_pred --CcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHH
Confidence 00000 001 233 5669999999999999999997
No 29
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=94.61 E-value=0.02 Score=52.65 Aligned_cols=100 Identities=18% Similarity=0.277 Sum_probs=66.2
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCC-c---cccccc-cccCCcccccccccCccCCHHHHHHHhchhh
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGN-S---LVKMSL-VKVGEKQTWCRLCNIGFSSEELFRLHLNAKK 194 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~-~---~~~p~~-~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkK 194 (259)
+-|++|+....|.-.|.-|+.- |.--.+=..=++. + +.+--. .=++.++|-|..|+..|....+|..|++---
T Consensus 162 ~~C~~C~K~YvSmpALkMHirT--H~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS 239 (279)
T KOG2462|consen 162 FSCKYCGKVYVSMPALKMHIRT--HTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHS 239 (279)
T ss_pred ccCCCCCceeeehHHHhhHhhc--cCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhc
Confidence 4599999999999999999863 3311100000000 0 000000 0135678999999999999999999887311
Q ss_pred HHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcch
Q 047603 195 HKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGK 234 (259)
Q Consensus 195 H~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~Gk 234 (259)
....|-|..|..+|--..-|..|+.+.
T Consensus 240 -------------~~K~~qC~~C~KsFsl~SyLnKH~ES~ 266 (279)
T KOG2462|consen 240 -------------DVKKHQCPRCGKSFALKSYLNKHSESA 266 (279)
T ss_pred -------------CCccccCcchhhHHHHHHHHHHhhhhc
Confidence 222577999999999888998888654
No 30
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=94.47 E-value=0.079 Score=46.55 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=32.6
Q ss_pred CCcccCCccccccCCHHHHHHhhcchHHHHHHHHHH
Q 047603 209 GEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIE 244 (259)
Q Consensus 209 ~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~ 244 (259)
.++|-|.+|+-.-+++..|..|..||||+.+|..-+
T Consensus 51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarra 86 (222)
T KOG0227|consen 51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRA 86 (222)
T ss_pred CcceeehhhhhhhcchhhhhhhhccchhhHHHHHHH
Confidence 457889999999999999999999999999987754
No 31
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=94.36 E-value=0.029 Score=53.39 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=28.5
Q ss_pred CcccccccccCccCCHHHHHHHhchhhHHHHH
Q 047603 168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQ 199 (259)
Q Consensus 168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~ 199 (259)
.+.+||..|+-.|.....|..|+.||.|.+..
T Consensus 236 ~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~ 267 (470)
T COG5188 236 FPKVYCVKCGREFSRSKVFEYHLEGKRHCKEG 267 (470)
T ss_pred ccceeeHhhhhHhhhhHHHHHHHhhhhhhhhh
Confidence 34679999999999999999999999999853
No 32
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=94.28 E-value=0.023 Score=46.35 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=32.8
Q ss_pred CCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh
Q 047603 119 SNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL 153 (259)
Q Consensus 119 ~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~ 153 (259)
.+||-.|.--|.+...++.|+.+|.|++.++.|..
T Consensus 57 qfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~ 91 (129)
T KOG3408|consen 57 QFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE 91 (129)
T ss_pred eeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence 38899999999999999999999999999998864
No 33
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=94.15 E-value=0.061 Score=52.29 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=63.4
Q ss_pred CCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHH
Q 047603 118 DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKA 197 (259)
Q Consensus 118 ~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~ 197 (259)
.++.|.||++.+.....|-+|-=. -++ -..+.|.-|+..|++..+|.+|.+ +|+-
T Consensus 266 GdyiCqLCK~kYeD~F~LAQHrC~--------------------RIV---~vEYrCPEC~KVFsCPANLASHRR--WHKP 320 (500)
T KOG3993|consen 266 GDYICQLCKEKYEDAFALAQHRCP--------------------RIV---HVEYRCPECDKVFSCPANLASHRR--WHKP 320 (500)
T ss_pred HHHHHHHHHHhhhhHHHHhhccCC--------------------eeE---EeeecCCcccccccCchhhhhhhc--ccCC
Confidence 334499999999999999998221 111 235679999999999999999987 5554
Q ss_pred HHHHh-----------h-------hcc-C---CCCcccCCccccccCCHHHHHHhhc
Q 047603 198 LQRAK-----------C-------TLK-G---GGEQKWCKLCDVWCPNGDAFKMHLD 232 (259)
Q Consensus 198 ~~k~~-----------e-------~l~-g---~~~~~~C~lCnV~~~Se~~m~~HL~ 232 (259)
.-++. + .-+ | ..+.|-|.+|...|..+..|..|..
T Consensus 321 R~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHql 377 (500)
T KOG3993|consen 321 RPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQL 377 (500)
T ss_pred chhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHH
Confidence 32211 0 001 1 2336669999999999999987754
No 34
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.025 Score=55.49 Aligned_cols=33 Identities=27% Similarity=0.603 Sum_probs=31.7
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhH
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELK 152 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~ 152 (259)
+||-+|+.+|-|+.++.-|..+|+|+.+|+.|.
T Consensus 293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLr 325 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELR 325 (508)
T ss_pred eEEeeccccccchHHHHhhHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999876
No 35
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=93.92 E-value=0.056 Score=58.71 Aligned_cols=121 Identities=17% Similarity=0.295 Sum_probs=87.6
Q ss_pred CCC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCcc-cccccc-ccCCcccccccccCccCCHHHHHHHhchhhH
Q 047603 119 SNF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSL-VKMSLV-KVGEKQTWCRLCNIGFSSEELFRLHLNAKKH 195 (259)
Q Consensus 119 ~~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~-~~p~~~-~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH 195 (259)
..+ |..|+..+.-.+.|.-|...|-|.....-...+.+.. .....+ ..+...+-|..|++.++....+-.|+..-+|
T Consensus 464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h 543 (1406)
T KOG1146|consen 464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLH 543 (1406)
T ss_pred ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHhh
Confidence 345 9999999999999999999998888773333333210 001011 1223466799999999999999999999999
Q ss_pred HHHHHHh-hh-------c-----------------cCC----CC-cccCCccccccCCHHHHHHhhcchHHHHH
Q 047603 196 KALQRAK-CT-------L-----------------KGG----GE-QKWCKLCDVWCPNGDAFKMHLDGKNHILR 239 (259)
Q Consensus 196 ~~~~k~~-e~-------l-----------------~g~----~~-~~~C~lCnV~~~Se~~m~~HL~GkKH~~~ 239 (259)
+..++.. +. + .|. .. .+.|++|+-..|=..+++.|+...+|-.+
T Consensus 544 ~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~ 617 (1406)
T KOG1146|consen 544 RNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSP 617 (1406)
T ss_pred HHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCC
Confidence 9974332 10 0 011 12 44499999999999999999999999877
No 36
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=93.52 E-value=0.033 Score=53.15 Aligned_cols=97 Identities=20% Similarity=0.361 Sum_probs=60.5
Q ss_pred CCCCcccCCCHHHHHHHhcCCchHHHHHHhH-h---cCCc---cccccccccCCcccccccccCccCCHHHHHHHhchhh
Q 047603 122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELK-L---DGNS---LVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKK 194 (259)
Q Consensus 122 C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~-~---~~~~---~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkK 194 (259)
|..|.--|.....|-+|+.-+--..+ ..++ . .+-+ +...- +..--.-+.|.+|+++|.+.+.|..|++- |
T Consensus 210 Cp~Cg~~F~~~tkl~DH~rRqt~l~~-n~fqC~~C~KrFaTeklL~~H-v~rHvn~ykCplCdmtc~~~ssL~~H~r~-r 286 (467)
T KOG3608|consen 210 CPHCGELFRTKTKLFDHLRRQTELNT-NSFQCAQCFKRFATEKLLKSH-VVRHVNCYKCPLCDMTCSSASSLTTHIRY-R 286 (467)
T ss_pred cchHHHHhccccHHHHHHHhhhhhcC-CchHHHHHHHHHhHHHHHHHH-HHHhhhcccccccccCCCChHHHHHHHHh-h
Confidence 99999999999999999752210000 0000 0 0000 00000 00012345699999999999888888763 2
Q ss_pred HHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603 195 HKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD 232 (259)
Q Consensus 195 H~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~ 232 (259)
|.+ +..|-|+-|+..|..++.++.|+.
T Consensus 287 Hs~-----------dkpfKCd~Cd~~c~~esdL~kH~~ 313 (467)
T KOG3608|consen 287 HSK-----------DKPFKCDECDTRCVRESDLAKHVQ 313 (467)
T ss_pred hcc-----------CCCccccchhhhhccHHHHHHHHH
Confidence 322 336779999999999999999987
No 37
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=93.50 E-value=0.036 Score=51.74 Aligned_cols=34 Identities=21% Similarity=0.516 Sum_probs=29.6
Q ss_pred CCCCCCCCcccCC-CHHHHHHHhcCCchHHHHHHh
Q 047603 118 DSNFCSICHVPCS-SAFNYNQHLKGRKHKAKLQEL 151 (259)
Q Consensus 118 ~~~~C~lC~V~~t-Se~~l~~Hl~GKKHkkk~~~l 151 (259)
+..||++|++++. +......|-.|++|+.+|+..
T Consensus 9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kr 43 (336)
T KOG0150|consen 9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKR 43 (336)
T ss_pred cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHH
Confidence 4579999999995 677889999999999999864
No 38
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=93.48 E-value=0.051 Score=55.97 Aligned_cols=101 Identities=19% Similarity=0.371 Sum_probs=67.6
Q ss_pred CCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccc-cccCCcccccccccCccCCHHHHHHHhchhhHH
Q 047603 118 DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSL-VKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHK 196 (259)
Q Consensus 118 ~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~-~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~ 196 (259)
+.|-|.+|-.+|.+..+|..|..- |+. +.... -.. .......|.|.-|...|-=...|..|++
T Consensus 239 ~nfsC~lCsytFAyRtQLErhm~~--hkp-------g~dqa--~sltqsa~lRKFKCtECgKAFKfKHHLKEHlR----- 302 (1007)
T KOG3623|consen 239 PNFSCMLCSYTFAYRTQLERHMQL--HKP-------GGDQA--ISLTQSALLRKFKCTECGKAFKFKHHLKEHLR----- 302 (1007)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHh--hcC-------CCccc--ccccchhhhccccccccchhhhhHHHHHhhhe-----
Confidence 334499999999999999888762 221 00000 000 0011346779999998887766666665
Q ss_pred HHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcchHHHHHHHH
Q 047603 197 ALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYE 242 (259)
Q Consensus 197 ~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~ 242 (259)
+..+-..|-|.-|...|.....|.+||.+||=.-.+-.
T Consensus 303 --------IHSGEKPfeCpnCkKRFSHSGSySSHmSSKKCIsli~v 340 (1007)
T KOG3623|consen 303 --------IHSGEKPFECPNCKKRFSHSGSYSSHMSSKKCISLILV 340 (1007)
T ss_pred --------eecCCCCcCCcccccccccCCcccccccccchhhhhcc
Confidence 22233356699999999999999999999998754433
No 39
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=93.30 E-value=0.046 Score=30.53 Aligned_cols=21 Identities=14% Similarity=0.399 Sum_probs=17.1
Q ss_pred ccCCccccccCCHHHHHHhhc
Q 047603 212 KWCKLCDVWCPNGDAFKMHLD 232 (259)
Q Consensus 212 ~~C~lCnV~~~Se~~m~~HL~ 232 (259)
|.|.+|+..|.+...|..|+.
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~ 21 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMR 21 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHH
Confidence 459999999999999999985
No 40
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=93.21 E-value=0.053 Score=52.85 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=30.4
Q ss_pred cccCCccccccCCHHHHHHhhcchHHHHHHHHHH
Q 047603 211 QKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIE 244 (259)
Q Consensus 211 ~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~ 244 (259)
...|.+|||...|+..+-+|++|+||+..|+.+.
T Consensus 493 kkqcslcnvlissevylfshvkgrkhqqal~e~~ 526 (672)
T KOG4722|consen 493 KKQCSLCNVLISSEVYLFSHVKGRKHQQALNELL 526 (672)
T ss_pred hhccchhhhhhhhhhhhhhhhcchhHHHHHHHHh
Confidence 3449999999999999999999999999988763
No 41
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=93.16 E-value=0.16 Score=43.51 Aligned_cols=74 Identities=26% Similarity=0.419 Sum_probs=57.5
Q ss_pred cccccccCccCCHHHHHHHhchhhHHHHHHHhhh-------------------------------------c-----cC-
Q 047603 171 TWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCT-------------------------------------L-----KG- 207 (259)
Q Consensus 171 ~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~-------------------------------------l-----~g- 207 (259)
|.|.+|....--+..++.|+.++-|+..++-..+ + .|
T Consensus 1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~tkl~k~~~dFLqEy~~nk~KKt~~r~~~~~~~~~~~~~ie~D~~~gi 80 (165)
T PF04988_consen 1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQTKLPKKTMDFLQEYMVNKFKKTESRRQQLENSSEASKQIEQDVMEGI 80 (165)
T ss_pred CccceeeeecccHHHHHHHHccchHHHHHHHHHhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcccccccchhhhc
Confidence 5699999999899999999999999986654210 0 01
Q ss_pred -------CCCcccCCccccccCCH-HHHHHhhcchHHHHHHHHHH
Q 047603 208 -------GGEQKWCKLCDVWCPNG-DAFKMHLDGKNHILRLYEIE 244 (259)
Q Consensus 208 -------~~~~~~C~lCnV~~~Se-~~m~~HL~GkKH~~~lk~~~ 244 (259)
+-+.++|..|++..... ..++.||.+.-|..+-+...
T Consensus 81 g~ehfm~KVEa~hCsACd~~IP~~~~~vQ~Hl~S~~H~~Nrr~~~ 125 (165)
T PF04988_consen 81 GQEHFMKKVEAAHCSACDVFIPMQHSSVQKHLKSQDHNKNRRAMM 125 (165)
T ss_pred CHHHHHHHHHHhhhhHhhhhccCcHHHHHHHhccHHHHhhHHHHH
Confidence 13477899999988764 48899999999998876543
No 42
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=93.08 E-value=0.06 Score=30.03 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=16.1
Q ss_pred CCCCcccCCCHHHHHHHhc
Q 047603 122 CSICHVPCSSAFNYNQHLK 140 (259)
Q Consensus 122 C~lC~V~~tSe~~l~~Hl~ 140 (259)
|.+|+.+|.+...+..|+.
T Consensus 3 C~~C~~~~~~~~~l~~H~~ 21 (24)
T PF13894_consen 3 CPICGKSFRSKSELRQHMR 21 (24)
T ss_dssp -SSTS-EESSHHHHHHHHH
T ss_pred CcCCCCcCCcHHHHHHHHH
Confidence 9999999999999999975
No 43
>PHA00733 hypothetical protein
Probab=93.04 E-value=0.079 Score=43.49 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=57.7
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHHH
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQ 199 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~ 199 (259)
..|.+|+..+.....+..|-.=++|. . .....++.|..|...|.+...+..|..- |
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~l~~~~-------~-----------~~~~kPy~C~~Cgk~Fss~s~L~~H~r~--h---- 96 (128)
T PHA00733 41 LIRAVVKTLIYNPQLLDESSYLYKLL-------T-----------SKAVSPYVCPLCLMPFSSSVSLKQHIRY--T---- 96 (128)
T ss_pred HHHHHHhhhccChhhhcchHHHHhhc-------c-----------cCCCCCccCCCCCCcCCCHHHHHHHHhc--C----
Confidence 34999999999888887773311221 0 0113457799999999999999887652 1
Q ss_pred HHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603 200 RAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD 232 (259)
Q Consensus 200 k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~ 232 (259)
...+-|.+|...|.....|..|+.
T Consensus 97 ---------~~~~~C~~CgK~F~~~~sL~~H~~ 120 (128)
T PHA00733 97 ---------EHSKVCPVCGKEFRNTDSTLDHVC 120 (128)
T ss_pred ---------CcCccCCCCCCccCCHHHHHHHHH
Confidence 013679999999999999998864
No 44
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=93.03 E-value=0.097 Score=46.70 Aligned_cols=18 Identities=22% Similarity=0.707 Sum_probs=9.5
Q ss_pred CCCCcccCCCHHHHHHHh
Q 047603 122 CSICHVPCSSAFNYNQHL 139 (259)
Q Consensus 122 C~lC~V~~tSe~~l~~Hl 139 (259)
|..|...|+...+|..|.
T Consensus 148 ct~cgkgfndtfdlkrh~ 165 (267)
T KOG3576|consen 148 CTFCGKGFNDTFDLKRHT 165 (267)
T ss_pred HhhccCcccchhhhhhhh
Confidence 555555555555554443
No 45
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=92.91 E-value=0.065 Score=37.09 Aligned_cols=27 Identities=22% Similarity=0.650 Sum_probs=23.6
Q ss_pred CCCCCCCcccCCCHHHHHHHhcCCchHHHH
Q 047603 119 SNFCSICHVPCSSAFNYNQHLKGRKHKAKL 148 (259)
Q Consensus 119 ~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~ 148 (259)
.-||+.|.+.+. .|..|+.+++|++=+
T Consensus 5 ~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA 31 (49)
T PF07535_consen 5 PGYCENCRVKYD---DLEEHIQSEKHRKFA 31 (49)
T ss_pred CccCccccchhh---hHHHHhCCHHHHHHH
Confidence 479999999987 489999999999754
No 46
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=0.1 Score=47.16 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=32.7
Q ss_pred CCCcccCCccccccCCHHHHHHhhcchHHHHHHHHHH
Q 047603 208 GGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIE 244 (259)
Q Consensus 208 ~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~ 244 (259)
..+.+.|-|||+... +..+..|++|++|+.++.++-
T Consensus 32 ~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lK 67 (264)
T KOG3032|consen 32 ESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLK 67 (264)
T ss_pred CCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHH
Confidence 456888999999999 999999999999999998875
No 47
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=92.67 E-value=0.047 Score=37.81 Aligned_cols=28 Identities=21% Similarity=0.533 Sum_probs=23.8
Q ss_pred CCCCCCCcccCCCHHHHHHHhcCCchHHHHH
Q 047603 119 SNFCSICHVPCSSAFNYNQHLKGRKHKAKLQ 149 (259)
Q Consensus 119 ~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~ 149 (259)
.-||++|.+.|. .|..|+.+++|++=+.
T Consensus 5 ~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~ 32 (49)
T smart00586 5 PGYCENCREKYD---DLETHLLSEKHRRFAE 32 (49)
T ss_pred CcccccHhHHHh---hHHHHhccHHHHHHHc
Confidence 379999999986 6899999999997553
No 48
>PLN02748 tRNA dimethylallyltransferase
Probab=92.57 E-value=0.1 Score=51.74 Aligned_cols=33 Identities=33% Similarity=0.647 Sum_probs=30.0
Q ss_pred CCCCCCcc-cCCCHHHHHHHhcCCchHHHHHHhH
Q 047603 120 NFCSICHV-PCSSAFNYNQHLKGRKHKAKLQELK 152 (259)
Q Consensus 120 ~~C~lC~V-~~tSe~~l~~Hl~GKKHkkk~~~l~ 152 (259)
+.|++|+. ++.++..-+.|+.|++|+++++...
T Consensus 419 ~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~ 452 (468)
T PLN02748 419 YVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLK 452 (468)
T ss_pred ccccCCCCcccCCHHHHHHHhcchHHHHHHhHHH
Confidence 44999998 8999999999999999999998664
No 49
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=92.43 E-value=0.064 Score=30.34 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.7
Q ss_pred ccCCccccccCCHHHHHHhhcc
Q 047603 212 KWCKLCDVWCPNGDAFKMHLDG 233 (259)
Q Consensus 212 ~~C~lCnV~~~Se~~m~~HL~G 233 (259)
|-|..|+..|.+...|..|++-
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 4599999999999999999863
No 50
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=92.33 E-value=0.089 Score=54.29 Aligned_cols=83 Identities=17% Similarity=0.422 Sum_probs=59.7
Q ss_pred CCCCCC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhh
Q 047603 116 QADSNF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKK 194 (259)
Q Consensus 116 ~~~~~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkK 194 (259)
..+..| |++|+..|.-...|..|-. .. .+..++-|.||...|--...|..|.+
T Consensus 890 te~gmyaCDqCDK~FqKqSSLaRHKY-----------EH------------sGqRPyqC~iCkKAFKHKHHLtEHkR--- 943 (1007)
T KOG3623|consen 890 TEDGMYACDQCDKAFQKQSSLARHKY-----------EH------------SGQRPYQCIICKKAFKHKHHLTEHKR--- 943 (1007)
T ss_pred CccccchHHHHHHHHHhhHHHHHhhh-----------hh------------cCCCCcccchhhHhhhhhhhhhhhhh---
Confidence 334467 9999999988888876622 11 12235679999998887766665543
Q ss_pred HHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcch
Q 047603 195 HKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGK 234 (259)
Q Consensus 195 H~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~Gk 234 (259)
|..+-..|-|+-|...|.....|.+||+-+
T Consensus 944 ----------LHSGEKPfQCdKClKRFSHSGSYSQHMNHR 973 (1007)
T KOG3623|consen 944 ----------LHSGEKPFQCDKCLKRFSHSGSYSQHMNHR 973 (1007)
T ss_pred ----------hccCCCcchhhhhhhhcccccchHhhhccc
Confidence 333334677999999999999999999843
No 51
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=92.31 E-value=0.081 Score=31.11 Aligned_cols=22 Identities=18% Similarity=0.210 Sum_probs=20.0
Q ss_pred ccCCccccccCCHHHHHHhhcc
Q 047603 212 KWCKLCDVWCPNGDAFKMHLDG 233 (259)
Q Consensus 212 ~~C~lCnV~~~Se~~m~~HL~G 233 (259)
|.|..|+..|.+...|..|++-
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~ 23 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRS 23 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCT
T ss_pred CCCCccCCccCChhHHHHHhHH
Confidence 5699999999999999999953
No 52
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=91.65 E-value=0.11 Score=41.72 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=33.5
Q ss_pred CCcccCCccccccCCHHHHHHhhcchHHHHHHHHHH
Q 047603 209 GEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIE 244 (259)
Q Consensus 209 ~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~ 244 (259)
.+.+||--|...|-++..+..|.+|+=|+++++++.
T Consensus 53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelR 88 (126)
T COG5112 53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELR 88 (126)
T ss_pred CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHh
Confidence 458999999999999999999999999999999873
No 53
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=91.43 E-value=0.12 Score=41.39 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=32.7
Q ss_pred CCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh
Q 047603 119 SNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL 153 (259)
Q Consensus 119 ~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~ 153 (259)
.+||--|.--|.++..|..|..|+-|++.++.+..
T Consensus 55 qhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRe 89 (126)
T COG5112 55 QHYCIECARYFITEKALMEHKKGKVHKRRAKELRE 89 (126)
T ss_pred eeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhc
Confidence 48999999999999999999999999999998874
No 54
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=91.14 E-value=0.1 Score=29.45 Aligned_cols=19 Identities=37% Similarity=0.749 Sum_probs=18.1
Q ss_pred CCCCcccCCCHHHHHHHhc
Q 047603 122 CSICHVPCSSAFNYNQHLK 140 (259)
Q Consensus 122 C~lC~V~~tSe~~l~~Hl~ 140 (259)
|.+|+..|.+...|..|+.
T Consensus 3 C~~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 3 CPICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp ETTTTEEESSHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHh
Confidence 9999999999999999975
No 55
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=90.26 E-value=0.13 Score=49.17 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=32.0
Q ss_pred CcccCCccccccCCHHHHHHhhcchHHHHHHHHHHH
Q 047603 210 EQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIEK 245 (259)
Q Consensus 210 ~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~~ 245 (259)
..+||..|...|....+|+.|+.||.|.+..+.-++
T Consensus 237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~ 272 (470)
T COG5188 237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE 272 (470)
T ss_pred cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence 489999999999999999999999999988776544
No 56
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=90.21 E-value=0.24 Score=43.31 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=32.2
Q ss_pred CCCcccCCccccccCCHHHHHHhhcchHHHHHHHHH
Q 047603 208 GGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEI 243 (259)
Q Consensus 208 ~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~ 243 (259)
-.+.|-|.+|+-.--++..+..|+.||||+.++..-
T Consensus 50 h~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr 85 (222)
T COG5246 50 HTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR 85 (222)
T ss_pred CCCcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence 355788999999999999999999999999988665
No 57
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=90.02 E-value=0.23 Score=48.61 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=28.0
Q ss_pred ccccccCccCCHHHHHHHhchhhHHHHHHHh
Q 047603 172 WCRLCNIGFSSEELFRLHLNAKKHKALQRAK 202 (259)
Q Consensus 172 ~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~ 202 (259)
-|.+|||-.+|+..+-+|.+|+||+..+..+
T Consensus 495 qcslcnvlissevylfshvkgrkhqqal~e~ 525 (672)
T KOG4722|consen 495 QCSLCNVLISSEVYLFSHVKGRKHQQALNEL 525 (672)
T ss_pred ccchhhhhhhhhhhhhhhhcchhHHHHHHHH
Confidence 5999999999999999999999999976543
No 58
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=89.57 E-value=0.21 Score=29.27 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.5
Q ss_pred CCCCCcccCCCHHHHHHHhc
Q 047603 121 FCSICHVPCSSAFNYNQHLK 140 (259)
Q Consensus 121 ~C~lC~V~~tSe~~l~~Hl~ 140 (259)
.|.+|+.+|.+...|..|..
T Consensus 3 ~C~~C~~~F~~~~~l~~H~~ 22 (27)
T PF13912_consen 3 ECDECGKTFSSLSALREHKR 22 (27)
T ss_dssp EETTTTEEESSHHHHHHHHC
T ss_pred CCCccCCccCChhHHHHHhH
Confidence 39999999999999999984
No 59
>smart00355 ZnF_C2H2 zinc finger.
Probab=88.72 E-value=0.38 Score=26.81 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.2
Q ss_pred ccCCccccccCCHHHHHHhhc
Q 047603 212 KWCKLCDVWCPNGDAFKMHLD 232 (259)
Q Consensus 212 ~~C~lCnV~~~Se~~m~~HL~ 232 (259)
+-|..|+..|++...|..|+.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 359999999999999999987
No 60
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=88.49 E-value=0.26 Score=43.38 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=30.4
Q ss_pred CCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhH
Q 047603 118 DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELK 152 (259)
Q Consensus 118 ~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~ 152 (259)
..+-|.||+..-+++..+..|.+||||+.|++...
T Consensus 52 G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarra 86 (222)
T KOG0227|consen 52 GKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRA 86 (222)
T ss_pred cceeehhhhhhhcchhhhhhhhccchhhHHHHHHH
Confidence 33449999999999999999999999999997544
No 61
>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]
Probab=88.01 E-value=0.36 Score=41.35 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=27.4
Q ss_pred ccccccccCccC--CHHHHHHHhchhhHHHHHHH
Q 047603 170 QTWCRLCNIGFS--SEELFRLHLNAKKHKALQRA 201 (259)
Q Consensus 170 ~~~C~lCnv~~~--S~~~l~sHl~GkKH~~~~k~ 201 (259)
.+||+-|++.++ |.+.=..|+.|++|+.+.+.
T Consensus 3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~ 36 (165)
T KOG3454|consen 3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKD 36 (165)
T ss_pred cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHH
Confidence 578999998885 77888999999999997654
No 62
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=87.71 E-value=1.1 Score=38.38 Aligned_cols=82 Identities=20% Similarity=0.367 Sum_probs=56.6
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhc---------------C---Cc----------ccccccccc-----
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLD---------------G---NS----------LVKMSLVKV----- 166 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~---------------~---~~----------~~~p~~~~~----- 166 (259)
+.|.+|....-.+..+..|+.++-|+..+.-+... + .. ...+...++
T Consensus 1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~tkl~k~~~dFLqEy~~nk~KKt~~r~~~~~~~~~~~~~ie~D~~~gi 80 (165)
T PF04988_consen 1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQTKLPKKTMDFLQEYMVNKFKKTESRRQQLENSSEASKQIEQDVMEGI 80 (165)
T ss_pred CccceeeeecccHHHHHHHHccchHHHHHHHHHhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcccccccchhhhc
Confidence 35999999999999999999999999877755310 0 00 000000011
Q ss_pred C-------CcccccccccCccCC-HHHHHHHhchhhHHHHHHH
Q 047603 167 G-------EKQTWCRLCNIGFSS-EELFRLHLNAKKHKALQRA 201 (259)
Q Consensus 167 ~-------~~~~~C~lCnv~~~S-~~~l~sHl~GkKH~~~~k~ 201 (259)
+ -...+|.-|++.... ...++.|+..-.|..+.+.
T Consensus 81 g~ehfm~KVEa~hCsACd~~IP~~~~~vQ~Hl~S~~H~~Nrr~ 123 (165)
T PF04988_consen 81 GQEHFMKKVEAAHCSACDVFIPMQHSSVQKHLKSQDHNKNRRA 123 (165)
T ss_pred CHHHHHHHHHHhhhhHhhhhccCcHHHHHHHhccHHHHhhHHH
Confidence 0 124589999999865 4678999999999886553
No 63
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=87.31 E-value=0.4 Score=44.99 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=27.2
Q ss_pred cccccccccCccC-CHHHHHHHhchhhHHHHHH
Q 047603 169 KQTWCRLCNIGFS-SEELFRLHLNAKKHKALQR 200 (259)
Q Consensus 169 ~~~~C~lCnv~~~-S~~~l~sHl~GkKH~~~~k 200 (259)
...||+.|++++. .......|-+|++|+.+++
T Consensus 9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~ 41 (336)
T KOG0150|consen 9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVA 41 (336)
T ss_pred cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHH
Confidence 4689999999995 5677899999999999653
No 64
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.10 E-value=0.48 Score=42.88 Aligned_cols=34 Identities=26% Similarity=0.646 Sum_probs=31.0
Q ss_pred CCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh
Q 047603 119 SNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL 153 (259)
Q Consensus 119 ~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~ 153 (259)
...|.|||+..- +..-..|..||+|+.++..|+.
T Consensus 35 ql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs 68 (264)
T KOG3032|consen 35 QLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS 68 (264)
T ss_pred CeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence 355999999998 9999999999999999999984
No 65
>smart00355 ZnF_C2H2 zinc finger.
Probab=87.07 E-value=0.5 Score=26.30 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=18.1
Q ss_pred CCCCcccCCCHHHHHHHhc
Q 047603 122 CSICHVPCSSAFNYNQHLK 140 (259)
Q Consensus 122 C~lC~V~~tSe~~l~~Hl~ 140 (259)
|..|+.+|.+...++.|..
T Consensus 3 C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 3 CPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCcchhCCHHHHHHHHH
Confidence 9999999999999999986
No 66
>COG5136 U1 snRNP-specific protein C [RNA processing and modification]
Probab=86.45 E-value=0.17 Score=43.37 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=27.9
Q ss_pred CCCCCCCcccCC--CHHHHHHHhcCCchHHHHHHh
Q 047603 119 SNFCSICHVPCS--SAFNYNQHLKGRKHKAKLQEL 151 (259)
Q Consensus 119 ~~~C~lC~V~~t--Se~~l~~Hl~GKKHkkk~~~l 151 (259)
..||+.|+++++ +.++...|+.|++|....+..
T Consensus 3 RY~CeyC~~~LthD~lsvRk~H~~G~~H~~~~~dY 37 (188)
T COG5136 3 RYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRKDY 37 (188)
T ss_pred chHHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHH
Confidence 466999999997 557889999999999888754
No 67
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=85.29 E-value=0.51 Score=46.12 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=46.8
Q ss_pred CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccc---------c--ccccc-cCCcccccccccCccCCHHHH
Q 047603 120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLV---------K--MSLVK-VGEKQTWCRLCNIGFSSEELF 186 (259)
Q Consensus 120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~---------~--p~~~~-~~~~~~~C~lCnv~~~S~~~l 186 (259)
.| |.-|+..|+.+.+|-+|-. .|+.+-++-..+.++-. + +.... ..+.-|-|.+|...|-.+..|
T Consensus 295 EYrCPEC~KVFsCPANLASHRR--WHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYL 372 (500)
T KOG3993|consen 295 EYRCPECDKVFSCPANLASHRR--WHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYL 372 (500)
T ss_pred eecCCcccccccCchhhhhhhc--ccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHH
Confidence 57 9999999999999999965 67766654433222100 0 00000 112245599999999999999
Q ss_pred HHHhc
Q 047603 187 RLHLN 191 (259)
Q Consensus 187 ~sHl~ 191 (259)
..|..
T Consensus 373 rKHql 377 (500)
T KOG3993|consen 373 RKHQL 377 (500)
T ss_pred HHhHH
Confidence 88855
No 68
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=84.32 E-value=0.47 Score=49.76 Aligned_cols=51 Identities=20% Similarity=0.397 Sum_probs=43.8
Q ss_pred ccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcchH
Q 047603 172 WCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKN 235 (259)
Q Consensus 172 ~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~GkK 235 (259)
-|-+|.....+...|+.||+- ..+...|-|.||..-|+...+|..|+.+-|
T Consensus 607 qCiiC~rVlSC~saLqmHyrt-------------HtGERPFkCKiCgRAFtTkGNLkaH~~vHk 657 (958)
T KOG1074|consen 607 QCIICLRVLSCPSALQMHYRT-------------HTGERPFKCKICGRAFTTKGNLKAHMSVHK 657 (958)
T ss_pred ceeeeeecccchhhhhhhhhc-------------ccCcCccccccccchhccccchhhcccccc
Confidence 599999999999999999982 234447779999999999999999998754
No 69
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=83.55 E-value=0.85 Score=39.97 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=30.2
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL 153 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~ 153 (259)
+-|.||+..--++..+..|..||||+-++.....
T Consensus 54 ~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~ 87 (222)
T COG5246 54 YVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSE 87 (222)
T ss_pred EEeeeeccccccHHHHHHhhccchhhhhHHHHHH
Confidence 4499999999999999999999999999976543
No 70
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=83.38 E-value=0.93 Score=49.71 Aligned_cols=78 Identities=22% Similarity=0.388 Sum_probs=59.2
Q ss_pred cccccccccCccCCHHHHHHHhchhhHHHHH---HHhhh---------ccCCCCcccCCccccccCCHHHHHHhhcchHH
Q 047603 169 KQTWCRLCNIGFSSEELFRLHLNAKKHKALQ---RAKCT---------LKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNH 236 (259)
Q Consensus 169 ~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~---k~~e~---------l~g~~~~~~C~lCnV~~~Se~~m~~HL~GkKH 236 (259)
..+.|..|+-.+.-.+.|..|.+.+-|.-.- ++-.. ...+...+-|.+|+++++....+-.||..-+|
T Consensus 464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h 543 (1406)
T KOG1146|consen 464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLH 543 (1406)
T ss_pred ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHhh
Confidence 4567999999999999999998876665532 11111 11234467799999999999999999999999
Q ss_pred HHHHHHHHHH
Q 047603 237 ILRLYEIEKN 246 (259)
Q Consensus 237 ~~~lk~~~~~ 246 (259)
+.+++..++.
T Consensus 544 ~~~lee~~~~ 553 (1406)
T KOG1146|consen 544 RNELEEAEEN 553 (1406)
T ss_pred HHHHHHHHhc
Confidence 9997766544
No 71
>PHA00732 hypothetical protein
Probab=81.12 E-value=1.8 Score=32.62 Aligned_cols=46 Identities=15% Similarity=0.347 Sum_probs=35.2
Q ss_pred cccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcch
Q 047603 171 TWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGK 234 (259)
Q Consensus 171 ~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~Gk 234 (259)
+.|..|+..|++...+..|.... |. .+-|+.|+..|. .+..|+..+
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~~-H~--------------~~~C~~CgKsF~---~l~~H~~~~ 47 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARRN-HT--------------LTKCPVCNKSYR---RLNQHFYSQ 47 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhcc-cC--------------CCccCCCCCEeC---Chhhhhccc
Confidence 46999999999999999887521 21 135999999998 477787554
No 72
>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]
Probab=78.45 E-value=0.46 Score=43.94 Aligned_cols=36 Identities=25% Similarity=0.569 Sum_probs=33.0
Q ss_pred cccCCccccccCCHHHHHHhhcchHHHHHHHHHHHH
Q 047603 211 QKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIEKN 246 (259)
Q Consensus 211 ~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~~~ 246 (259)
.+||.+|+..|+.+.-|..|..+--|++.+..+..+
T Consensus 25 RwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~~N 60 (309)
T KOG2837|consen 25 RWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFALN 60 (309)
T ss_pred HHHHHHHHHHhccccccccccCCHHHHHHHHHHHhC
Confidence 488999999999999999999999999998887655
No 73
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=78.06 E-value=1.3 Score=25.26 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=15.6
Q ss_pred ccCCccccccCCHHHHHHhhc
Q 047603 212 KWCKLCDVWCPNGDAFKMHLD 232 (259)
Q Consensus 212 ~~C~lCnV~~~Se~~m~~HL~ 232 (259)
|-|..|+-.++ +..|..|++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~ 20 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLK 20 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHH
Confidence 45999999998 999999985
No 74
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=76.31 E-value=3.8 Score=28.23 Aligned_cols=48 Identities=23% Similarity=0.431 Sum_probs=33.9
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN 191 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~ 191 (259)
+-|..|+. --+...|..|+. ..|.. ......|.+|...++ .+|..|+.
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~-~~H~~--------------------~~~~v~CPiC~~~~~--~~l~~Hl~ 50 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCE-DEHRS--------------------ESKNVVCPICSSRVT--DNLIRHLN 50 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHH-hHCcC--------------------CCCCccCCCchhhhh--hHHHHHHH
Confidence 44999999 566889999976 34441 123577999997654 37777765
No 75
>PTZ00448 hypothetical protein; Provisional
Probab=75.43 E-value=2.7 Score=40.49 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=30.8
Q ss_pred CcccCCccccccCCHHHHHHhhcchHHHHHHHHH
Q 047603 210 EQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEI 243 (259)
Q Consensus 210 ~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~ 243 (259)
..|-|..|++.|.+...+..|+++-=|+-||+..
T Consensus 313 ~~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRk 346 (373)
T PTZ00448 313 NMLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRN 346 (373)
T ss_pred CCccccccccccCCHHHHHHHhhhhHHHHHHHHH
Confidence 3577999999999999999999999999999754
No 76
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=73.32 E-value=0.82 Score=41.77 Aligned_cols=56 Identities=27% Similarity=0.547 Sum_probs=41.6
Q ss_pred ccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcchHHHHHHHHH
Q 047603 170 QTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEI 243 (259)
Q Consensus 170 ~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~ 243 (259)
.-||.-||..|..+..|.+|.+.| -|-|.||.....|---|..|-. +=|+..+.++
T Consensus 10 kpwcwycnrefddekiliqhqkak-----------------hfkchichkkl~sgpglsihcm-qvhketid~i 65 (341)
T KOG2893|consen 10 KPWCWYCNREFDDEKILIQHQKAK-----------------HFKCHICHKKLFSGPGLSIHCM-QVHKETIDKI 65 (341)
T ss_pred Cceeeecccccchhhhhhhhhhhc-----------------cceeeeehhhhccCCCceeehh-hhhhhhhhcc
Confidence 569999999999999998886632 2669999988887777776654 3455555544
No 77
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=73.20 E-value=6.4 Score=27.06 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=34.4
Q ss_pred ccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcc
Q 047603 170 QTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDG 233 (259)
Q Consensus 170 ~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~G 233 (259)
.|.|..|+. .-+...|..|+.- .|.. ....+.|.||...+. ..|..||..
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~-~H~~----------~~~~v~CPiC~~~~~--~~l~~Hl~~ 51 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCED-EHRS----------ESKNVVCPICSSRVT--DNLIRHLNS 51 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHh-HCcC----------CCCCccCCCchhhhh--hHHHHHHHH
Confidence 466999999 5567788888763 2321 223577999998655 488888864
No 78
>PF12907 zf-met2: Zinc-binding
Probab=72.15 E-value=1.8 Score=28.71 Aligned_cols=25 Identities=20% Similarity=0.607 Sum_probs=20.6
Q ss_pred CCCCCc---ccCCCHHHHHHHhcCCchHH
Q 047603 121 FCSICH---VPCSSAFNYNQHLKGRKHKA 146 (259)
Q Consensus 121 ~C~lC~---V~~tSe~~l~~Hl~GKKHkk 146 (259)
-|.||. +..+++.+|.+|+..| |-+
T Consensus 3 ~C~iC~qtF~~t~~~~~L~eH~enK-HpK 30 (40)
T PF12907_consen 3 ICKICRQTFMQTTNEPQLKEHAENK-HPK 30 (40)
T ss_pred CcHHhhHHHHhcCCHHHHHHHHHcc-CCC
Confidence 499999 7778999999999964 544
No 79
>PHA00733 hypothetical protein
Probab=71.70 E-value=7.8 Score=31.71 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=37.6
Q ss_pred CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603 120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN 191 (259)
Q Consensus 120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~ 191 (259)
.| |..|...|.+...|..|..- |. ..+-|.+|...|.....|..|..
T Consensus 73 Py~C~~Cgk~Fss~s~L~~H~r~--h~-----------------------~~~~C~~CgK~F~~~~sL~~H~~ 120 (128)
T PHA00733 73 PYVCPLCLMPFSSSVSLKQHIRY--TE-----------------------HSKVCPVCGKEFRNTDSTLDHVC 120 (128)
T ss_pred CccCCCCCCcCCCHHHHHHHHhc--CC-----------------------cCccCCCCCCccCCHHHHHHHHH
Confidence 35 99999999999999988652 10 13579999999999999987754
No 80
>PTZ00448 hypothetical protein; Provisional
Probab=68.29 E-value=5.1 Score=38.66 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=29.5
Q ss_pred ccccccccCccCCHHHHHHHhchhhHHHHHHHh
Q 047603 170 QTWCRLCNIGFSSEELFRLHLNAKKHKALQRAK 202 (259)
Q Consensus 170 ~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~ 202 (259)
.+.|.+|++.|.+......|++.-.|+-+++.+
T Consensus 314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRk 346 (373)
T PTZ00448 314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRN 346 (373)
T ss_pred CccccccccccCCHHHHHHHhhhhHHHHHHHHH
Confidence 456999999999999999999999999987654
No 81
>PHA02768 hypothetical protein; Provisional
Probab=60.56 E-value=5.5 Score=28.21 Aligned_cols=23 Identities=17% Similarity=0.292 Sum_probs=20.2
Q ss_pred cccCCccccccCCHHHHHHhhcc
Q 047603 211 QKWCKLCDVWCPNGDAFKMHLDG 233 (259)
Q Consensus 211 ~~~C~lCnV~~~Se~~m~~HL~G 233 (259)
.|-|+.|+..|+..+.|..|++-
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~ 27 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRK 27 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHh
Confidence 36799999999999999988864
No 82
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=60.09 E-value=5.3 Score=36.64 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCcccCCCHHHHHHHhcC
Q 047603 115 IQADSNFCSICHVPCSSAFNYNQHLKG 141 (259)
Q Consensus 115 ~~~~~~~C~lC~V~~tSe~~l~~Hl~G 141 (259)
.++++-||-.||-.|..+..|.+|..-
T Consensus 6 kk~~kpwcwycnrefddekiliqhqka 32 (341)
T KOG2893|consen 6 KKVDKPWCWYCNREFDDEKILIQHQKA 32 (341)
T ss_pred cccCCceeeecccccchhhhhhhhhhh
Confidence 455678999999999999999999653
No 83
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=59.91 E-value=3 Score=36.91 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=0.0
Q ss_pred CCCCcccCCcccc-ccCCHHHHHHhhcchHHHHHHHHH
Q 047603 207 GGGEQKWCKLCDV-WCPNGDAFKMHLDGKNHILRLYEI 243 (259)
Q Consensus 207 g~~~~~~C~lCnV-~~~Se~~m~~HL~GkKH~~~lk~~ 243 (259)
|-.-.|.|+||.= ++.....|..|....||..-|+-+
T Consensus 97 GL~~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcL 134 (196)
T PF11931_consen 97 GLGVEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCL 134 (196)
T ss_dssp --------------------------------------
T ss_pred CCCCeeeeEeCCCcceecHHHHHHhcChhHHHccChhc
Confidence 4455789999965 556889999999999999888765
No 84
>PLN03086 PRLI-interacting factor K; Provisional
Probab=58.56 E-value=19 Score=36.73 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=16.6
Q ss_pred CCCC-CCCCcccCCCHHHHHHHhcC
Q 047603 118 DSNF-CSICHVPCSSAFNYNQHLKG 141 (259)
Q Consensus 118 ~~~~-C~lC~V~~tSe~~l~~Hl~G 141 (259)
+..| |..|+..|. ...+..|..-
T Consensus 451 ~~H~~C~~Cgk~f~-~s~LekH~~~ 474 (567)
T PLN03086 451 KNHVHCEKCGQAFQ-QGEMEKHMKV 474 (567)
T ss_pred ccCccCCCCCCccc-hHHHHHHHHh
Confidence 3456 999998885 5677777653
No 85
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=53.36 E-value=9 Score=26.95 Aligned_cols=21 Identities=29% Similarity=0.562 Sum_probs=16.1
Q ss_pred CCCCCCcccCCCHHHHHHHhc
Q 047603 120 NFCSICHVPCSSAFNYNQHLK 140 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~ 140 (259)
-.|.+|+.++.+..+|.-|+.
T Consensus 25 atCP~C~a~~~~srnLrRHle 45 (54)
T PF09237_consen 25 ATCPICGAVIRQSRNLRRHLE 45 (54)
T ss_dssp EE-TTT--EESSHHHHHHHHH
T ss_pred CCCCcchhhccchhhHHHHHH
Confidence 459999999999999999985
No 86
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=52.65 E-value=9.2 Score=26.89 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=15.8
Q ss_pred ccCCccccccCCHHHHHHhhc
Q 047603 212 KWCKLCDVWCPNGDAFKMHLD 232 (259)
Q Consensus 212 ~~C~lCnV~~~Se~~m~~HL~ 232 (259)
--|.+|+..+.+..+|..||.
T Consensus 25 atCP~C~a~~~~srnLrRHle 45 (54)
T PF09237_consen 25 ATCPICGAVIRQSRNLRRHLE 45 (54)
T ss_dssp EE-TTT--EESSHHHHHHHHH
T ss_pred CCCCcchhhccchhhHHHHHH
Confidence 349999999999999999984
No 87
>PF12907 zf-met2: Zinc-binding
Probab=52.64 E-value=7.6 Score=25.75 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=19.7
Q ss_pred ccCCccc---cccCCHHHHHHhhcch
Q 047603 212 KWCKLCD---VWCPNGDAFKMHLDGK 234 (259)
Q Consensus 212 ~~C~lCn---V~~~Se~~m~~HL~Gk 234 (259)
+.|.||. +...++.+|.+|...|
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enK 27 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENK 27 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHcc
Confidence 5699999 7888999999998754
No 88
>PHA02768 hypothetical protein; Provisional
Probab=52.42 E-value=9.2 Score=27.11 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.2
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCchH
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKHK 145 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKHk 145 (259)
+-|+.|+..|+..+.|..|.. +|.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r--~H~ 29 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLR--KHN 29 (55)
T ss_pred cCcchhCCeeccHHHHHHHHH--hcC
Confidence 349999999999999999976 355
No 89
>PHA00616 hypothetical protein
Probab=52.26 E-value=7 Score=26.45 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=19.2
Q ss_pred ccCCccccccCCHHHHHHhhc
Q 047603 212 KWCKLCDVWCPNGDAFKMHLD 232 (259)
Q Consensus 212 ~~C~lCnV~~~Se~~m~~HL~ 232 (259)
|-|..|+..|....+|..|++
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r 22 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLL 22 (44)
T ss_pred CccchhhHHHhhHHHHHHHHH
Confidence 559999999999999999994
No 90
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=48.74 E-value=23 Score=27.59 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=42.1
Q ss_pred cccccccCccCCHHHHHHHhchhhHHHH-H---HHhh---h---c-----------------cC--CCCcccC----Ccc
Q 047603 171 TWCRLCNIGFSSEELFRLHLNAKKHKAL-Q---RAKC---T---L-----------------KG--GGEQKWC----KLC 217 (259)
Q Consensus 171 ~~C~lCnv~~~S~~~l~sHl~GkKH~~~-~---k~~e---~---l-----------------~g--~~~~~~C----~lC 217 (259)
+.|..|...+.- ..+..|++.+-|... . .+.+ + | .| .-..|-| ..|
T Consensus 12 lIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~~C 90 (109)
T PF12013_consen 12 LICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPPHC 90 (109)
T ss_pred EEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCCCC
Confidence 469999977665 678899998655441 1 1111 1 1 01 1235669 999
Q ss_pred ccccCCHHHHHHhhcc
Q 047603 218 DVWCPNGDAFKMHLDG 233 (259)
Q Consensus 218 nV~~~Se~~m~~HL~G 233 (259)
.-.+.+...|..|++-
T Consensus 91 ~y~~~~~~~m~~H~~~ 106 (109)
T PF12013_consen 91 GYITRSKKTMRKHWRK 106 (109)
T ss_pred CcEeccHHHHHHHHHH
Confidence 9999999999999863
No 91
>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]
Probab=47.77 E-value=2.5 Score=39.16 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=32.0
Q ss_pred CCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh
Q 047603 118 DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL 153 (259)
Q Consensus 118 ~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~ 153 (259)
..+||..|+..|..+-.|..|...-.|++.+..+..
T Consensus 24 lRwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~~ 59 (309)
T KOG2837|consen 24 LRWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFAL 59 (309)
T ss_pred HHHHHHHHHHHhccccccccccCCHHHHHHHHHHHh
Confidence 346799999999999999999999999999986654
No 92
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=46.86 E-value=10 Score=34.65 Aligned_cols=28 Identities=18% Similarity=0.446 Sum_probs=22.1
Q ss_pred CCCCCcccC---CCHHHHHHHhcCCchHHHH
Q 047603 121 FCSICHVPC---SSAFNYNQHLKGRKHKAKL 148 (259)
Q Consensus 121 ~C~lC~V~~---tSe~~l~~Hl~GKKHkkk~ 148 (259)
-|+||++-+ .+..-+..||.||-|.-=+
T Consensus 192 VCeVCGA~Ls~~D~d~RladH~~GK~HlGy~ 222 (254)
T PF03194_consen 192 VCEVCGAFLSVGDNDRRLADHFGGKQHLGYA 222 (254)
T ss_pred chhhhhhHHhccchHHHHHHHhccchhhhHH
Confidence 499999544 5677899999999997543
No 93
>PF05477 SURF2: Surfeit locus protein 2 (SURF2); InterPro: IPR008833 Surfeit locus protein 2 is part of a group of at least six sequence unrelated genes (Surf-1 to Surf-6). The six Surfeit genes have been classified as housekeeping genes, being expressed in all tissue types tested and not containing a TATA box in their promoter region. The exact function of SURF2 is unknown [].
Probab=45.81 E-value=35 Score=31.22 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=50.6
Q ss_pred CCCCcccCC-CHHHHHHHhcCCchHHHHHHhHhcCCcccccccccc--CCcccccccccCccC-CHHHHHHHhchhhHHH
Q 047603 122 CSICHVPCS-SAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKV--GEKQTWCRLCNIGFS-SEELFRLHLNAKKHKA 197 (259)
Q Consensus 122 C~lC~V~~t-Se~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~--~~~~~~C~lCnv~~~-S~~~l~sHl~GkKH~~ 197 (259)
|.+=+=.+. ....++.|..|||=++-+.....-.-..-.|-.++. ....+||.|=...+| ++.....|++|++=+.
T Consensus 28 C~lTGHEmp~~~~~l~~y~~gKKy~~l~~~~~~~d~~~yeP~ivps~~~~~~LfCkLT~~~iNk~pe~V~rHv~GKRf~k 107 (244)
T PF05477_consen 28 CTLTGHEMPCRLDELQQYIRGKKYQRLIRAKPEFDFSKYEPHIVPSTKNPHKLFCKLTGRHINKSPEHVERHVNGKRFQK 107 (244)
T ss_pred EeecCcccCCCHHHHHHHhccHHHHHHHhcccCCChHhcCCccccccCCCceeEEechHhHhccCHHHHHHHhhhHHHHH
Confidence 777665554 357899999999988543321110000112333332 245778876555554 6789999999999998
Q ss_pred HHHHh
Q 047603 198 LQRAK 202 (259)
Q Consensus 198 ~~k~~ 202 (259)
.+...
T Consensus 108 aLek~ 112 (244)
T PF05477_consen 108 ALEKY 112 (244)
T ss_pred HHHHH
Confidence 76543
No 94
>COG5136 U1 snRNP-specific protein C [RNA processing and modification]
Probab=45.45 E-value=7.6 Score=33.45 Aligned_cols=31 Identities=19% Similarity=0.522 Sum_probs=25.5
Q ss_pred ccccccccCccC--CHHHHHHHhchhhHHHHHH
Q 047603 170 QTWCRLCNIGFS--SEELFRLHLNAKKHKALQR 200 (259)
Q Consensus 170 ~~~C~lCnv~~~--S~~~l~sHl~GkKH~~~~k 200 (259)
.++|+-|++.++ +...-.+|+.|++|..+.+
T Consensus 3 RY~CeyC~~~LthD~lsvRk~H~~G~~H~~~~~ 35 (188)
T COG5136 3 RYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRK 35 (188)
T ss_pred chHHHHHHHHHhccHHHHHHHhhhhHHHHHHHH
Confidence 467999999997 4567789999999998643
No 95
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=44.73 E-value=7 Score=38.09 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=24.6
Q ss_pred cccCCccccccCCHHHHHHhhcchHHHHHHHH
Q 047603 211 QKWCKLCDVWCPNGDAFKMHLDGKNHILRLYE 242 (259)
Q Consensus 211 ~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~ 242 (259)
.-||+-|.+.+. .|++|+.|.+|+.-.+.
T Consensus 422 ~GYCENCreky~---~lE~Hi~s~~HrrFAEn 450 (468)
T COG5067 422 KGYCENCREKYE---SLEQHIVSEKHRRFAEN 450 (468)
T ss_pred cchhHHHHHHHH---HHHHHhhhhhhhhhhhc
Confidence 689999999986 78999999999875443
No 96
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=44.39 E-value=34 Score=36.03 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=32.5
Q ss_pred CCCCCccCCCCcccCCCCCCC-CCCCcccCCCHHHHHHHhcCCchHHHHHH
Q 047603 101 PELPESLDSHPEHAIQADSNF-CSICHVPCSSAFNYNQHLKGRKHKAKLQE 150 (259)
Q Consensus 101 ~~~p~~~~~~~~~~~~~~~~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~ 150 (259)
+++|-...+...+...+..+| |..|+..|.--..++.|+. .|+.+.++
T Consensus 773 ~~~pg~~~S~~~~~~~~~giFpCreC~kvF~KiKSrNAHMK--~Hr~q~~~ 821 (907)
T KOG4167|consen 773 KQKPGGTQSGSSGETDPTGIFPCRECGKVFFKIKSRNAHMK--THRQQEEQ 821 (907)
T ss_pred CCCCCccccccCCCCCCCceeehHHHHHHHHHHhhhhHHHH--HHHHHHHH
Confidence 355544433333344445577 9999999998889999985 67666643
No 97
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=43.83 E-value=7.6 Score=34.33 Aligned_cols=39 Identities=18% Similarity=0.420 Sum_probs=0.0
Q ss_pred CCCCCCC-CCCCc-ccCCCHHHHHHHhcCCchHHHHHHhHh
Q 047603 115 IQADSNF-CSICH-VPCSSAFNYNQHLKGRKHKAKLQELKL 153 (259)
Q Consensus 115 ~~~~~~~-C~lC~-V~~tSe~~l~~Hl~GKKHkkk~~~l~~ 153 (259)
+.....| |+||. .+.-....|..|+...+|..-++-|..
T Consensus 96 hGL~~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcLGI 136 (196)
T PF11931_consen 96 HGLGVEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCLGI 136 (196)
T ss_dssp -----------------------------------------
T ss_pred hCCCCeeeeEeCCCcceecHHHHHHhcChhHHHccChhcCC
Confidence 3444556 99998 566699999999999999998887643
No 98
>PHA00732 hypothetical protein
Probab=43.24 E-value=19 Score=27.07 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.5
Q ss_pred ccCCccccccCCHHHHHHhhc
Q 047603 212 KWCKLCDVWCPNGDAFKMHLD 232 (259)
Q Consensus 212 ~~C~lCnV~~~Se~~m~~HL~ 232 (259)
|-|..|+..|++...+..|++
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r 22 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHAR 22 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhh
Confidence 569999999999999999987
No 99
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=42.99 E-value=19 Score=21.34 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=16.8
Q ss_pred ccCCccccccCCHHHHHHhhc
Q 047603 212 KWCKLCDVWCPNGDAFKMHLD 232 (259)
Q Consensus 212 ~~C~lCnV~~~Se~~m~~HL~ 232 (259)
+-|.+|+..+ ++..+..|+.
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 3599999998 7789999985
No 100
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=42.16 E-value=31 Score=24.09 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 047603 15 ITAELAILRELAFRRKVFLL 34 (259)
Q Consensus 15 ~~~~~a~~~~~~~~~~~~~~ 34 (259)
|..+|||+-.+|++++++.-
T Consensus 2 ~~i~EALr~QmEvQrrLhEQ 21 (51)
T PF14379_consen 2 MQITEALRMQMEVQRRLHEQ 21 (51)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 55779999999999998864
No 101
>PF05477 SURF2: Surfeit locus protein 2 (SURF2); InterPro: IPR008833 Surfeit locus protein 2 is part of a group of at least six sequence unrelated genes (Surf-1 to Surf-6). The six Surfeit genes have been classified as housekeeping genes, being expressed in all tissue types tested and not containing a TATA box in their promoter region. The exact function of SURF2 is unknown [].
Probab=41.89 E-value=48 Score=30.34 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=51.7
Q ss_pred cccccccccCccCC-HHHHHHHhchhhHHHHHHHhhhc------------cCCCCcccCCcccccc-CCHHHHHHhhcch
Q 047603 169 KQTWCRLCNIGFSS-EELFRLHLNAKKHKALQRAKCTL------------KGGGEQKWCKLCDVWC-PNGDAFKMHLDGK 234 (259)
Q Consensus 169 ~~~~C~lCnv~~~S-~~~l~sHl~GkKH~~~~k~~e~l------------~g~~~~~~C~lCnV~~-~Se~~m~~HL~Gk 234 (259)
..+.|.+=+--+.. ...++.|++|++=+...+....+ ......+||.|=.-.. .+......|++|+
T Consensus 24 ~rvrC~lTGHEmp~~~~~l~~y~~gKKy~~l~~~~~~~d~~~yeP~ivps~~~~~~LfCkLT~~~iNk~pe~V~rHv~GK 103 (244)
T PF05477_consen 24 GRVRCTLTGHEMPCRLDELQQYIRGKKYQRLIRAKPEFDFSKYEPHIVPSTKNPHKLFCKLTGRHINKSPEHVERHVNGK 103 (244)
T ss_pred CeEEEeecCcccCCCHHHHHHHhccHHHHHHHhcccCCChHhcCCccccccCCCceeEEechHhHhccCHHHHHHHhhhH
Confidence 34457655544433 57899999999998654332111 1223467776644433 3567999999999
Q ss_pred HHHHHHHHHHHHH
Q 047603 235 NHILRLYEIEKNR 247 (259)
Q Consensus 235 KH~~~lk~~~~~~ 247 (259)
|=++.|.+..+..
T Consensus 104 Rf~kaLek~ee~~ 116 (244)
T PF05477_consen 104 RFQKALEKYEECQ 116 (244)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876543
No 102
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=41.72 E-value=20 Score=21.02 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=15.9
Q ss_pred ccCCccccccCCHHHHHHhhc
Q 047603 212 KWCKLCDVWCPNGDAFKMHLD 232 (259)
Q Consensus 212 ~~C~lCnV~~~Se~~m~~HL~ 232 (259)
.-|.+|+-.|+ ...+..|+.
T Consensus 3 ~~C~~CgR~F~-~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKFN-PDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEEC-HHHHHHHHH
Confidence 45999999995 668888864
No 103
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=40.38 E-value=11 Score=36.15 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=44.8
Q ss_pred cccccccCccCCH-HHHHHHhchhhHHH---------HHHHhhhccCCCCcccCCccccccCCHHHHHHhhcchHHHH
Q 047603 171 TWCRLCNIGFSSE-ELFRLHLNAKKHKA---------LQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHIL 238 (259)
Q Consensus 171 ~~C~lCnv~~~S~-~~l~sHl~GkKH~~---------~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~ 238 (259)
+-|-.|+..+-.. +.+-.|+--.-|.. +-++.+.|...-+.+-|-.|.+.|.....+..||+-|+|++
T Consensus 145 lqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrr 222 (423)
T KOG2482|consen 145 LQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRR 222 (423)
T ss_pred eEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCcc
Confidence 3499999877543 34445544322221 11222233333357889999999999999999999999975
No 104
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=38.46 E-value=35 Score=34.46 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=29.8
Q ss_pred CcccCCccccccCCHHHHHHhhcchHHHHHHHH
Q 047603 210 EQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYE 242 (259)
Q Consensus 210 ~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~ 242 (259)
+...|..|++.|-|......|++.-=|+-+++.
T Consensus 65 d~~~CstCq~~F~s~~eqr~HyksD~HR~N~Kr 97 (591)
T KOG2505|consen 65 DSDQCSTCQIPFGSRQEQREHYKSDWHRFNTKR 97 (591)
T ss_pred ccccccccCCccccHHHHHHHHHHHHHHHHHHH
Confidence 456699999999999999999999999999864
No 105
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=38.44 E-value=21 Score=35.95 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=29.0
Q ss_pred CCCCCCcccCCCHHHHHHHhcCCchHHHHHHh
Q 047603 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQEL 151 (259)
Q Consensus 120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l 151 (259)
..|..|++.|.+.+....||..--|+-|++.-
T Consensus 67 ~~CstCq~~F~s~~eqr~HyksD~HR~N~Krk 98 (591)
T KOG2505|consen 67 DQCSTCQIPFGSRQEQREHYKSDWHRFNTKRK 98 (591)
T ss_pred ccccccCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999998743
No 106
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=37.40 E-value=19 Score=33.26 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=43.6
Q ss_pred cccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccC-----------CCCccc-CCccccccCCHHHHHHhhcchHH
Q 047603 169 KQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKG-----------GGEQKW-CKLCDVWCPNGDAFKMHLDGKNH 236 (259)
Q Consensus 169 ~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g-----------~~~~~~-C~lCnV~~~Se~~m~~HL~GkKH 236 (259)
..|.|--|+..|.. ..|..|..--.-. ++....|.+ .+..-| |.+|.+.-+.+..+-.|..+..|
T Consensus 28 ~~fSCIDC~k~F~~-~sYknH~kCITEa--QKYg~~l~~~~~Kek~~k~~~kq~~w~~~l~~~~~~~~~~~~p~V~~l~~ 104 (276)
T KOG2186|consen 28 AYFSCIDCGKTFER-VSYKNHTKCITEA--QKYGKKLYGYGKKEKQNKGEQKQQQWFDQLSPATDTCEQSYFPHVKSLLK 104 (276)
T ss_pred CeeEEeeccccccc-chhhhhhhhcchH--HHhhhhhcCcccchhhhHHHHHHHHHHHHhchhccccccCcchHHHHHHH
Confidence 47789999999987 4566664310000 000000100 012344 99999999999999999999988
Q ss_pred HHHH
Q 047603 237 ILRL 240 (259)
Q Consensus 237 ~~~l 240 (259)
..+-
T Consensus 105 ~ek~ 108 (276)
T KOG2186|consen 105 QEKA 108 (276)
T ss_pred HHhh
Confidence 7653
No 107
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=35.72 E-value=6 Score=35.21 Aligned_cols=69 Identities=16% Similarity=0.304 Sum_probs=39.9
Q ss_pred ccccccCccCCHHHHHHHhchhhHHHHHHHhhhcc----------CCCCcccCCccccccCCHHHHHHhhcchHHHHHHH
Q 047603 172 WCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLK----------GGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLY 241 (259)
Q Consensus 172 ~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~----------g~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk 241 (259)
|..+|+.+-....++.+- +-|+.....+.... ....-|||++|++.+... .-..|..+--|+.+++
T Consensus 38 ~vgv~d~ssldaaqlaek---~g~~~fvh~lfe~~~ets~p~nss~~e~lfyCE~Cd~~ip~~-~~snH~tSttHllsl~ 113 (223)
T KOG2384|consen 38 FVGVTDESSLDAAQLAEK---GGAQAFVHSLFENDRETSHPMNSSRDEALFYCEVCDIYIPNS-KKSNHFTSTTHLLSLQ 113 (223)
T ss_pred cccccccccchHHHHHHh---cChHHHHHHHHHHhccCCCcccCCCCCccchhhhhhhhccCC-CCccchhhHHHHhhhc
Confidence 455666655555555421 22444444332111 123478899999998752 3345778888887776
Q ss_pred HHH
Q 047603 242 EIE 244 (259)
Q Consensus 242 ~~~ 244 (259)
.+.
T Consensus 114 ~~p 116 (223)
T KOG2384|consen 114 HIP 116 (223)
T ss_pred cCC
Confidence 654
No 108
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=34.81 E-value=61 Score=28.99 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=41.0
Q ss_pred CCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHHHH
Q 047603 121 FCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQR 200 (259)
Q Consensus 121 ~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k 200 (259)
|=.+|..+-....+|.+- .-|..-+..|...-.....|.....+...+||++|++.+... .-..|....-|+..++
T Consensus 38 ~vgv~d~ssldaaqlaek---~g~~~fvh~lfe~~~ets~p~nss~~e~lfyCE~Cd~~ip~~-~~snH~tSttHllsl~ 113 (223)
T KOG2384|consen 38 FVGVTDESSLDAAQLAEK---GGAQAFVHSLFENDRETSHPMNSSRDEALFYCEVCDIYIPNS-KKSNHFTSTTHLLSLQ 113 (223)
T ss_pred cccccccccchHHHHHHh---cChHHHHHHHHHHhccCCCcccCCCCCccchhhhhhhhccCC-CCccchhhHHHHhhhc
Confidence 345555555555555443 334544444443111111233233445678999999998541 1225777777777655
Q ss_pred H
Q 047603 201 A 201 (259)
Q Consensus 201 ~ 201 (259)
.
T Consensus 114 ~ 114 (223)
T KOG2384|consen 114 H 114 (223)
T ss_pred c
Confidence 4
No 109
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=34.58 E-value=48 Score=32.10 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=46.2
Q ss_pred CCCCCC--CcccCCCHHHHHHHhcCCchHHHHHHhHhcCCc------------cccccc---cccC-CcccccccccCcc
Q 047603 119 SNFCSI--CHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNS------------LVKMSL---VKVG-EKQTWCRLCNIGF 180 (259)
Q Consensus 119 ~~~C~l--C~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~------------~~~p~~---~~~~-~~~~~C~lCnv~~ 180 (259)
.|+|.. |.++|.+...|..|+..+-|+--+......+.. +..-.. ...+ .....|..|++.|
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~F 230 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYF 230 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhcccee
Confidence 466864 999999999999999987766444322211111 000000 0011 1134599999999
Q ss_pred CCHHHHHHHhch
Q 047603 181 SSEELFRLHLNA 192 (259)
Q Consensus 181 ~S~~~l~sHl~G 192 (259)
.+.+.|..|.+-
T Consensus 231 YdDDEL~~HcR~ 242 (493)
T COG5236 231 YDDDELRRHCRL 242 (493)
T ss_pred cChHHHHHHHHh
Confidence 999999888764
No 110
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=33.90 E-value=40 Score=33.63 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=41.6
Q ss_pred CHHHHHHHhchhhHHHHHHHh-hhc----cCCCCccc-CCccccccCCHHHHHHhhcchHHHHHHHH
Q 047603 182 SEELFRLHLNAKKHKALQRAK-CTL----KGGGEQKW-CKLCDVWCPNGDAFKMHLDGKNHILRLYE 242 (259)
Q Consensus 182 S~~~l~sHl~GkKH~~~~k~~-e~l----~g~~~~~~-C~lCnV~~~Se~~m~~HL~GkKH~~~lk~ 242 (259)
+...|.+|+.+.......... +.+ ...+=.|| |.+|...|.+...+..|+.. +|...+..
T Consensus 22 si~eL~sy~~~~~~~~a~~~Lseal~fak~n~sWrFWiCp~CskkF~d~~~~~~H~~~-eH~~~l~P 87 (466)
T PF04780_consen 22 SIDELKSYYESVYDREAADALSEALSFAKENKSWRFWICPRCSKKFSDAESCLSHMEQ-EHPAGLKP 87 (466)
T ss_pred EHHHHHHHHHhccchHHHHHHHHHHHHHHhcCceeEeeCCcccceeCCHHHHHHHHHH-hhhhhcCh
Confidence 456788998877544433222 111 23444888 99999999999999999974 57776643
No 111
>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays. This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.
Probab=30.98 E-value=44 Score=26.39 Aligned_cols=27 Identities=19% Similarity=-0.069 Sum_probs=22.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhhccc
Q 047603 13 RMITAELAILRELAFRRKVFLLRSQHD 39 (259)
Q Consensus 13 ~~~~~~~a~~~~~~~~~~~~~~~~~~~ 39 (259)
.-+|+++||.-|.+-+++|+..-|..|
T Consensus 39 ~~LTy~eAl~SE~~a~~~l~~~fP~~l 65 (102)
T PF10537_consen 39 SNLTYFEALESEKEARKKLEERFPEEL 65 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHH
Confidence 458999999999999999998655543
No 112
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=30.01 E-value=29 Score=31.73 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=25.3
Q ss_pred cccccccCccCC---HHHHHHHhchhhHHHHHHHhh
Q 047603 171 TWCRLCNIGFSS---EELFRLHLNAKKHKALQRAKC 203 (259)
Q Consensus 171 ~~C~lCnv~~~S---~~~l~sHl~GkKH~~~~k~~e 203 (259)
..|+||....+. ..-+..|+.||-|.-..+..+
T Consensus 191 ~VCeVCGA~Ls~~D~d~RladH~~GK~HlGy~~IR~ 226 (254)
T PF03194_consen 191 EVCEVCGAFLSVGDNDRRLADHFGGKQHLGYAKIRE 226 (254)
T ss_pred cchhhhhhHHhccchHHHHHHHhccchhhhHHHHHH
Confidence 469999976643 345899999999998766553
No 113
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=29.70 E-value=34 Score=33.99 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=31.4
Q ss_pred cCCCCCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh
Q 047603 114 AIQADSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL 153 (259)
Q Consensus 114 ~~~~~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~ 153 (259)
...+..++|..|.-...--..|..|..|+.|.+..+.+..
T Consensus 244 ~~s~Eel~~~g~erlk~al~alglk~gGt~~~ra~rlf~T 283 (497)
T KOG2636|consen 244 ASSVEELYCLGCERLKSALTALGLKCGGTLHERAQRLFST 283 (497)
T ss_pred hhHHHHHHhhchhHHHHHHHHHHHhcCCeecHHHHhhhhh
Confidence 3344557899999877766799999999999998876654
No 114
>smart00250 PLEC Plectin repeat.
Probab=28.28 E-value=27 Score=22.23 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=14.8
Q ss_pred cccCCCccccHHHHHHHHH
Q 047603 7 DAESRGRMITAELAILREL 25 (259)
Q Consensus 7 ~~~~~~~~~~~~~a~~~~~ 25 (259)
-|-..+..||.++|++|++
T Consensus 14 idp~t~~~lsv~eA~~~gl 32 (38)
T smart00250 14 IDPETGQKLSVEEALRRGL 32 (38)
T ss_pred EcCCCCCCcCHHHHHHcCC
Confidence 3445788899999999864
No 115
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=28.14 E-value=26 Score=25.18 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=19.6
Q ss_pred cccCCccccccCCHHHHHHhhc
Q 047603 211 QKWCKLCDVWCPNGDAFKMHLD 232 (259)
Q Consensus 211 ~~~C~lCnV~~~Se~~m~~HL~ 232 (259)
.+.|..|+..|.....|..|++
T Consensus 17 ~lrCPRC~~~FR~~K~Y~RHVN 38 (65)
T COG4049 17 FLRCPRCGMVFRRRKDYIRHVN 38 (65)
T ss_pred eeeCCchhHHHHHhHHHHHHhh
Confidence 4459999999999999999987
No 116
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=26.88 E-value=70 Score=30.95 Aligned_cols=123 Identities=14% Similarity=0.271 Sum_probs=73.5
Q ss_pred CCCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHh------------HhcCCcc-cc-----c---ccc----------c
Q 047603 117 ADSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQEL------------KLDGNSL-VK-----M---SLV----------K 165 (259)
Q Consensus 117 ~~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l------------~~~~~~~-~~-----p---~~~----------~ 165 (259)
..++-|--|.+.|...-.|..|+.-|.|++-=-.- ..++... +. + +.. .
T Consensus 193 L~r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~e 272 (423)
T KOG2482|consen 193 LERLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNE 272 (423)
T ss_pred HhhheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhc
Confidence 34566999999999999999999999998521100 0011100 00 0 000 0
Q ss_pred cCCc--ccccccccCccCCHHHHHHHhchhhHHH-HHHHhhh--c------------cCCCCcccCCccccccCCHHHHH
Q 047603 166 VGEK--QTWCRLCNIGFSSEELFRLHLNAKKHKA-LQRAKCT--L------------KGGGEQKWCKLCDVWCPNGDAFK 228 (259)
Q Consensus 166 ~~~~--~~~C~lCnv~~~S~~~l~sHl~GkKH~~-~~k~~e~--l------------~g~~~~~~C~lCnV~~~Se~~m~ 228 (259)
.+.. ..-|-.|....-....+-.|+.-. |.- .+|.++. | +...-...|-.|++.|-++-.+.
T Consensus 273 d~a~a~~v~CLfC~~~~en~~~l~eHmk~v-He~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~ 351 (423)
T KOG2482|consen 273 DDAEALSVVCLFCTNFYENPVFLFEHMKIV-HEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLL 351 (423)
T ss_pred CCCCccceEEEeeccchhhHHHHHHHHHHH-HHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhh
Confidence 0111 235777876665565666665532 222 2333322 1 12233566999999999999999
Q ss_pred HhhcchHHHHHH
Q 047603 229 MHLDGKNHILRL 240 (259)
Q Consensus 229 ~HL~GkKH~~~l 240 (259)
.|+.--+|..-+
T Consensus 352 ~hm~e~k~l~i~ 363 (423)
T KOG2482|consen 352 IHMVEDKHLSIL 363 (423)
T ss_pred hhcccccccccc
Confidence 999988886543
No 117
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.39 E-value=42 Score=34.97 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=10.3
Q ss_pred ccCCHHHHHHHhchhhH
Q 047603 179 GFSSEELFRLHLNAKKH 195 (259)
Q Consensus 179 ~~~S~~~l~sHl~GkKH 195 (259)
.+-+..++..|+++.-+
T Consensus 158 k~Yt~~el~~h~~~gd~ 174 (669)
T KOG2231|consen 158 KLYTRAELNLHLMFGDP 174 (669)
T ss_pred ehehHHHHHHHHhcCCC
Confidence 44456677777665544
No 118
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=25.16 E-value=32 Score=32.65 Aligned_cols=28 Identities=18% Similarity=0.441 Sum_probs=22.9
Q ss_pred CCCCCcccC---CCHHHHHHHhcCCchHHHH
Q 047603 121 FCSICHVPC---SSAFNYNQHLKGRKHKAKL 148 (259)
Q Consensus 121 ~C~lC~V~~---tSe~~l~~Hl~GKKHkkk~ 148 (259)
-|+||.+-+ .+..-+.+||.||-|.--+
T Consensus 188 VCeVCGa~L~~~D~d~RlaDHf~GKlHlGy~ 218 (319)
T KOG0796|consen 188 VCEVCGAFLSVNDADRRLADHFGGKLHLGYV 218 (319)
T ss_pred HHHhhhHHHhccchHHHHHHhhcchHHHHHH
Confidence 399999655 5778899999999997544
No 119
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=23.20 E-value=1.5e+02 Score=22.91 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=43.4
Q ss_pred CC-CCCCcccCCCHHHHHHHhcCCchHHHHH---HhHh---c-----CC--ccccccc--cccC----Cccccc----cc
Q 047603 120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQ---ELKL---D-----GN--SLVKMSL--VKVG----EKQTWC----RL 175 (259)
Q Consensus 120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~---~l~~---~-----~~--~~~~p~~--~~~~----~~~~~C----~l 175 (259)
.+ |..|+....- ..+..|+..+-|..+-. .+.. . .. ...-|+. .+.. -..+.| ..
T Consensus 11 vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~~ 89 (109)
T PF12013_consen 11 VLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPPH 89 (109)
T ss_pred EEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCCC
Confidence 44 9999977655 88899999876654222 1211 0 00 0111110 0111 124569 99
Q ss_pred ccCccCCHHHHHHHhch
Q 047603 176 CNIGFSSEELFRLHLNA 192 (259)
Q Consensus 176 Cnv~~~S~~~l~sHl~G 192 (259)
|.-.+.+...+..|+.-
T Consensus 90 C~y~~~~~~~m~~H~~~ 106 (109)
T PF12013_consen 90 CGYITRSKKTMRKHWRK 106 (109)
T ss_pred CCcEeccHHHHHHHHHH
Confidence 99999999999999863
No 120
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=22.92 E-value=38 Score=30.85 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=21.5
Q ss_pred CCCCCCCcccCCCHHHHHHHhcCC
Q 047603 119 SNFCSICHVPCSSAFNYNQHLKGR 142 (259)
Q Consensus 119 ~~~C~lC~V~~tSe~~l~~Hl~GK 142 (259)
.+||-.|++.+.++.+|..|.-|-
T Consensus 239 h~YC~fCG~~y~~~edl~ehCPGv 262 (268)
T KOG1994|consen 239 HYYCFFCGIKYKDEEDLYEHCPGV 262 (268)
T ss_pred ceEEEEeccccCCHHHHHHhCCCC
Confidence 356999999999999999998875
No 121
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=22.01 E-value=52 Score=29.45 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=26.0
Q ss_pred CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhH
Q 047603 120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELK 152 (259)
Q Consensus 120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~ 152 (259)
.| |.+|..-|-.+.--..|+. .||..+++.+.
T Consensus 77 K~~C~lc~KlFkg~eFV~KHI~-nKH~e~ve~~~ 109 (214)
T PF04959_consen 77 KWRCPLCGKLFKGPEFVRKHIF-NKHPEKVEEVK 109 (214)
T ss_dssp EEEE-SSS-EESSHHHHHHHHH-HH-HHHHHHHH
T ss_pred EECCCCCCcccCChHHHHHHHh-hcCHHHHHHHH
Confidence 57 9999999999999999999 89999998765
No 122
>PRK10204 hypothetical protein; Provisional
Probab=20.77 E-value=74 Score=22.30 Aligned_cols=20 Identities=35% Similarity=0.260 Sum_probs=16.6
Q ss_pred CccccHHHHHHHHHHHHHHH
Q 047603 12 GRMITAELAILRELAFRRKV 31 (259)
Q Consensus 12 ~~~~~~~~a~~~~~~~~~~~ 31 (259)
-.+||.|+|+.|=-+.|+--
T Consensus 34 ~vtlt~eeA~aRl~~LRr~Y 53 (55)
T PRK10204 34 LVTLTAEEALARLEELRRHY 53 (55)
T ss_pred cccccHHHHHHHHHHHHHHh
Confidence 46899999999988888754
No 123
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=20.03 E-value=46 Score=30.04 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=23.4
Q ss_pred CCCCCcccC---CCHHHHHHHhcCCchHHHHH
Q 047603 121 FCSICHVPC---SSAFNYNQHLKGRKHKAKLQ 149 (259)
Q Consensus 121 ~C~lC~V~~---tSe~~l~~Hl~GKKHkkk~~ 149 (259)
-|.||.+-+ .+..-+..|+.||-|.--+.
T Consensus 187 vC~iCgayLsrlDtdrrladHf~GklHlGy~~ 218 (258)
T COG5200 187 VCGICGAYLSRLDTDRRLADHFNGKLHLGYLL 218 (258)
T ss_pred hhhhhhhHHHhcchhhHHHHHhccchhhhHHH
Confidence 399999765 56678999999999986553
Done!