BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047604
         (382 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
           Nck-Interacting Kinase With Wee1chk1 Inhibitor
 pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
           Nck-Interacting Kinase With Wee1chk1 Inhibitor
 pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
           Nck-Interacting Kinase With Wee1chk1 Inhibitor
 pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
           Nck-Interacting Kinase With Wee1chk1 Inhibitor
 pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
           Nck-Interacting Kinase With Wee1chk1 Inhibitor
          Length = 326

 Score = 32.3 bits (72), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 286 IWVLSLVPGFAPVLPSLVAKLHTMRAKYLKPQQPSSHIKVKKWDFSFAS 334
           I  + +  G  P+       +H MRA +L P+ P+  +K KKW   F S
Sbjct: 222 ITAIEMAEGAPPL-----CDMHPMRALFLIPRNPAPRLKSKKWSKKFQS 265


>pdb|1LJR|A Chain A, Glutathione Transferase (Hgst T2-2) From Human
 pdb|1LJR|B Chain B, Glutathione Transferase (Hgst T2-2) From Human
 pdb|2LJR|A Chain A, Glutathione Transferase Apo-Form From Human
 pdb|2LJR|B Chain B, Glutathione Transferase Apo-Form From Human
 pdb|3LJR|A Chain A, Glutathione Transferase (Theta Class) From Human In
           Complex With The Glutathione Conjugate Of 1-Menaphthyl
           Sulfate
 pdb|3LJR|B Chain B, Glutathione Transferase (Theta Class) From Human In
           Complex With The Glutathione Conjugate Of 1-Menaphthyl
           Sulfate
          Length = 244

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 235 AGIMCGQFGVPFWKFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIENELIWVLSLVPG 294
           A  + G FG+P W   L  LIG  + +  ++         +Q L W+E++ +     + G
Sbjct: 103 ADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERN---RTAMDQALQWLEDKFLGDRPFLAG 159

Query: 295 FAPVLPSLVA 304
               L  L+A
Sbjct: 160 QQVTLADLMA 169


>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
           (Serca) From Bovine Muscle
          Length = 992

 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 91  WVALGVASSIGLGSGLHTFVLYLGPHIALFTIKAMQ 126
           WV + +  SIGL   LH  +LY+ P   +F ++A+ 
Sbjct: 927 WVNIWLVGSIGLSMSLHFLILYVDPLPMIFKLQALD 962


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,284,745
Number of Sequences: 62578
Number of extensions: 462565
Number of successful extensions: 763
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 6
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)