Query 047604
Match_columns 382
No_of_seqs 125 out of 152
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 12:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1109 Vacuole membrane prote 100.0 4E-114 9E-119 853.3 25.9 350 4-377 51-434 (440)
2 KOG1109 Vacuole membrane prote 98.1 2.2E-06 4.7E-11 87.4 4.5 140 165-310 5-160 (440)
3 PF09335 SNARE_assoc: SNARE as 96.3 0.0018 3.9E-08 53.5 1.5 82 177-259 15-112 (123)
4 PF11044 TMEMspv1-c74-12: Plec 90.8 1.1 2.4E-05 33.7 6.3 43 332-374 5-48 (49)
5 COG1238 Predicted membrane pro 81.2 0.54 1.2E-05 43.2 0.4 80 176-259 49-144 (161)
6 PF10104 Brr6_like_C_C: Di-sul 68.6 16 0.00036 32.4 6.3 42 332-373 5-46 (135)
7 PF06305 DUF1049: Protein of u 59.6 39 0.00085 25.6 6.2 45 332-376 21-65 (68)
8 COG0398 Uncharacterized conser 56.1 5.8 0.00013 38.0 1.3 82 177-259 75-174 (223)
9 KOG0476 Cl- channel CLC-2 and 50.3 27 0.00058 39.9 5.3 110 230-355 330-461 (931)
10 COG4040 Predicted membrane pro 47.6 27 0.00058 29.2 3.7 27 341-367 54-80 (85)
11 TIGR02209 ftsL_broad cell divi 44.4 39 0.00084 26.8 4.1 34 335-368 3-36 (85)
12 PF14163 SieB: Superinfection 40.9 68 0.0015 28.4 5.5 29 336-364 36-64 (151)
13 PF03739 YjgP_YjgQ: Predicted 39.0 1.2E+02 0.0027 29.4 7.5 50 76-125 301-350 (354)
14 PF04277 OAD_gamma: Oxaloaceta 34.8 40 0.00086 26.6 2.8 37 330-366 7-43 (79)
15 COG5085 Predicted membrane pro 26.7 1.1E+02 0.0025 29.9 4.8 39 332-370 86-130 (230)
16 KOG4503 Uncharacterized conser 26.7 1.1E+02 0.0025 29.9 4.8 39 332-370 86-130 (230)
17 PRK13952 mscL large-conductanc 23.4 96 0.0021 28.3 3.5 29 327-355 84-112 (142)
18 PRK13953 mscL large-conductanc 23.2 1.2E+02 0.0026 27.2 4.1 28 328-355 66-93 (125)
19 KOG1726 HVA22/DP1 gene product 20.4 2.1E+02 0.0046 28.1 5.4 22 80-101 28-49 (225)
No 1
>KOG1109 consensus Vacuole membrane protein VMP1 [General function prediction only]
Probab=100.00 E-value=4e-114 Score=853.27 Aligned_cols=350 Identities=40% Similarity=0.653 Sum_probs=311.5
Q ss_pred cHHHHHHHHHhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 047604 4 MADLREKHQQELENLTLTTQPFKTIKLFILGVIQYLKRSVLYLLAKGGWLMLSCTVVAALGILLVTIDGPHEKHLEELSE 83 (382)
Q Consensus 4 ~~~~~~~~~~ere~l~Lwr~Pi~TL~yF~le~~~~l~~~~~~l~~~~~~~~~~~~l~i~~~~~l~~i~GpH~~~v~~~~~ 83 (382)
+-+.++++|.||..++|||+|++|++||.+|+..+++.+..+|+++++|++.+..++ .+.+++|++|||||.|++++++
T Consensus 51 ~~~~~~~~R~er~~~vlwr~p~~tl~y~~~ei~~~~~~wst~Ll~~k~wLlt~~~~l-~~f~~ly~~~g~hq~~v~~l~~ 129 (440)
T KOG1109|consen 51 IFLQKLRERLERCILVLWRQPLITLEYFDLEIFELLREWSTKLLAVKRWLLTFSQLL-NVFTVLYLTDGPHQVHVEQLEK 129 (440)
T ss_pred hhHHHHHhhhhhheEEEecCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccchHHHHHHHHHH
Confidence 447788889999999999999999999999999999999999999999988877766 5677788899999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCcchhHHHHhhchhhHHHhHhhhhcCCCCCCCCCCccccccCCCCcccccCCCCCCCCCCC
Q 047604 84 YFRFGLWWVALGVASSIGLGSGLHTFVLYLGPHIALFTIKAMQCGRVDLKSAPYDTIQLKRGPSWLDKDCDEFGPPLFSS 163 (382)
Q Consensus 84 ~~~~~~wWvgLGVLSSVGLGTGLHTflLyLgPHIa~vtlaA~eC~sl~F~~~py~~~~~~~~~~w~~~~C~~~~~~~~~~ 163 (382)
+++|.+||++|||+|||||||||||||||||||||+||+||||||++|||+||||+ |++||++..
T Consensus 130 ~~~~~l~WI~lgVlssigLgsGLhtfLlyLgphIaavT~aayec~s~nfp~ppYP~----------~i~Cpet~~----- 194 (440)
T KOG1109|consen 130 WTLFELWWILLGVLSSIGLGSGLHTFLLYLGPHIAAVTLAAYECNSVNFPQPPYPD----------DIICPETEE----- 194 (440)
T ss_pred HHHHHHHHHHhcchhhccccccHHHHHHHhccccccccchhhhhcccCCCCCCCCC----------CCCCCCchh-----
Confidence 99999999999999999999999999999999999999999999999999999998 899998732
Q ss_pred CCCCCCChhhhhhHHHHHHHHHhhhhhccCCChHHHHHHHHhcCCCcchhh--hhhhcccCCC-----------------
Q 047604 164 SEGSRVPLSSILPQVQLEAILWGVGTALGELPPYFISRAASISGSRLDAMD--EFDDSSTESD----------------- 224 (382)
Q Consensus 164 ~~~~~vt~~~I~~kV~~ea~lWG~GTAiGELPPYf~araArlsG~~~~e~e--e~~~~~~~~~----------------- 224 (382)
..+...+|+|++|||.||+|||+|||+|||||||||||||+||.++||.| |+++....+.
T Consensus 195 -s~~v~~~wsi~~kVrieailwg~gtalgElppyFmaraarlsg~~p~dee~~ef~~g~~~d~e~~~~r~~r~k~wv~~~ 273 (440)
T KOG1109|consen 195 -SRGVPGLWSIFSKVRIEAILWGAGTALGELPPYFMARAARLSGVEPDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQ 273 (440)
T ss_pred -cccCccHHHHHHHHHhhhhhhccccccccCchHHHHHHHHhcCCCCcHHHhhhhhhhhhhhHHHHhhHHHHhHHHHHHH
Confidence 33445599999999999999999999999999999999999999999842 4444311100
Q ss_pred ------------CCCCChhhhhhhhhccccchhHHHHHHHHHhhhhhhhhccceeeEEeeechhHHHHHHHHHHHHhhcC
Q 047604 225 ------------GVVPNPLFDLAGIMCGQFGVPFWKFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIENELIWVLSLV 292 (382)
Q Consensus 225 ------------~s~PNplFDLaGi~CGhFlvPFWtFFgATlIGKAiIK~hiQ~~fvI~~fs~~~ve~~e~~i~~~l~~v 292 (382)
+|||||+|||||||||||++|||+||||||||||+||||||++|||.+||+|++|. .+.+++.|
T Consensus 274 v~~lgffgIli~aSIpnPlfdlaGitcghflvpfw~ffGaTLigKaiikmhIq~~fVi~~f~~~~~ee----~V~~l~tV 349 (440)
T KOG1109|consen 274 VQRLGFFGILICASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIIAFNIHLFEE----RVSILDTV 349 (440)
T ss_pred hhhcccceeEEEecCCCcchhhcccccccccchHHHHhhHHHHHHHHHHHhhheEEEEEeccHHHHHH----HHHHHhhc
Confidence 09999999999999999999999999999999999999999999999999999996 58899999
Q ss_pred CCCCCcchhHH-HHHHHHHHHhcCCCCC-CCccccc-chhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 047604 293 PGFAPVLPSLV-AKLHTMRAKYLKPQQP-SSHIKVK-KWDFSFASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDKEIA 369 (382)
Q Consensus 293 p~~~~~l~~~~-~~l~~~k~k~~~~~~~-~~~~~~~-~~~~~ls~~~~~~V~~mi~yF~iSiVns~AQ~y~k~~~~~~~~ 369 (382)
|++++.+|.++ +.|++||+++|+.... .+..+++ +| +++.|+.+|+.|+|||+.||||++||+|+||+|++...
T Consensus 350 p~lg~~lr~p~~~~le~Q~~llh~~~~s~~~lk~~~~~~---~ss~~e~~V~~m~c~f~~sii~slaq~y~kki~~~~~~ 426 (440)
T KOG1109|consen 350 PGLGHRLREPFRWLLEKQKQLLHSPIVSEKGLKEGESNT---LSSPFENVVENMVCYFTLSIINSLAQSYQKKIQNLFPS 426 (440)
T ss_pred cccccchhhHHHHHHHHHHhhcccccccccccccccccc---cccchhccchhhhHHHHHHHHHhhhHHHHHHHhhhcCC
Confidence 99999999997 4789999999865433 2223333 44 99999999999999999999999999999999999887
Q ss_pred HHhccCcc
Q 047604 370 ALTNNSSA 377 (382)
Q Consensus 370 ~~~~~~~~ 377 (382)
......+.
T Consensus 427 ~v~tt~~~ 434 (440)
T KOG1109|consen 427 GVMTTGEI 434 (440)
T ss_pred ccccccce
Confidence 76665543
No 2
>KOG1109 consensus Vacuole membrane protein VMP1 [General function prediction only]
Probab=98.13 E-value=2.2e-06 Score=87.35 Aligned_cols=140 Identities=34% Similarity=0.398 Sum_probs=91.9
Q ss_pred CCCCCChhhhhhHHHHHHHHHhhhhhccCCChHHHHHHHHhcCCCcchhhhhhh-cccCCC---C--CCCChhhhhhhhh
Q 047604 165 EGSRVPLSSILPQVQLEAILWGVGTALGELPPYFISRAASISGSRLDAMDEFDD-SSTESD---G--VVPNPLFDLAGIM 238 (382)
Q Consensus 165 ~~~~vt~~~I~~kV~~ea~lWG~GTAiGELPPYf~araArlsG~~~~e~ee~~~-~~~~~~---~--s~PNplFDLaGi~ 238 (382)
..++.++.+|+.+|++++.+||+|||.||+|||+.+||.+......-+.+...+ ..+..- + -+-=+.||+.=..
T Consensus 5 ~g~~k~~~~~~~~~~~s~~l~g~~~~~~~~~~~~~~rAG~~t~~~~~~~~~~~~R~er~~~vlwr~p~~tl~y~~~ei~~ 84 (440)
T KOG1109|consen 5 AGSRKPLTSILPQVQLSKILWGIGTAEGELPMYFLSRAGLKTDPSSIFLQKLRERLERCILVLWRQPLITLEYFDLEIFE 84 (440)
T ss_pred ccccccccccCcchhhHHHHhcccccccCCCcccccccccCCCcchhhHHHHHhhhhhheEEEecCcchhHHHhhHHHHH
Confidence 456778889999999999999999999999999999999876543322222211 111100 0 1122345554321
Q ss_pred ccccchhHHHHHH----------HHHhhhhhhhhccceeeEEeeechhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHH
Q 047604 239 CGQFGVPFWKFFL----------ATLIGKAIIKTHIQTVFIISVCNNQLLDWIENELIWVLSLVPGFAPVLPSLVAKLHT 308 (382)
Q Consensus 239 CGhFlvPFWtFFg----------ATlIGKAiIK~hiQ~~fvI~~fs~~~ve~~e~~i~~~l~~vp~~~~~l~~~~~~l~~ 308 (382)
+.=+|.+-. +.+++=..+=.+ +.+.+..+++++.++++..+.|++..||+.....+-+..+|..
T Consensus 85 ----~~~~wst~Ll~~k~wLlt~~~~l~~f~~ly~--~~g~hq~~v~~l~~~~~~~l~WI~lgVlssigLgsGLhtfLly 158 (440)
T KOG1109|consen 85 ----LLREWSTKLLAVKRWLLTFSQLLNVFTVLYL--TDGPHQVHVEQLEKWTLFELWWILLGVLSSIGLGSGLHTFLLY 158 (440)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhcchhhccccccHHHHHHH
Confidence 223665522 222333333333 6677778899999999999999999999877777776666655
Q ss_pred HH
Q 047604 309 MR 310 (382)
Q Consensus 309 ~k 310 (382)
..
T Consensus 159 Lg 160 (440)
T KOG1109|consen 159 LG 160 (440)
T ss_pred hc
Confidence 44
No 3
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=96.30 E-value=0.0018 Score=53.53 Aligned_cols=82 Identities=27% Similarity=0.452 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhhhhccCCChHHHHHHHHhcC-C----Ccchhhh---hhhcccCCCC--------CCCChhhhhhhhhcc
Q 047604 177 QVQLEAILWGVGTALGELPPYFISRAASISG-S----RLDAMDE---FDDSSTESDG--------VVPNPLFDLAGIMCG 240 (382)
Q Consensus 177 kV~~ea~lWG~GTAiGELPPYf~araArlsG-~----~~~e~ee---~~~~~~~~~~--------s~PNplFDLaGi~CG 240 (382)
....-.++-.+|+.+|.+..|+++|-..... . +++-.+. .++..+ +++ -+|-.-+|+.-+.||
T Consensus 15 g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~l~~~~~~P~~P~~~~~~~ag 93 (123)
T PF09335_consen 15 GPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQ-KYGFWVLFLSRFIPGLPFDVVNYLAG 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHccHHHHHHHHH
Confidence 4444666778999999999999999886311 0 1111122 333221 222 356655899999999
Q ss_pred ccchhHHHHHHHHHhhhhh
Q 047604 241 QFGVPFWKFFLATLIGKAI 259 (382)
Q Consensus 241 hFlvPFWtFFgATlIGKAi 259 (382)
..-||||+|+.++++|+.+
T Consensus 94 ~~~~~~~~f~~~~~~g~~~ 112 (123)
T PF09335_consen 94 ITRMPFRRFFLASLIGKLP 112 (123)
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999975
No 4
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=90.84 E-value=1.1 Score=33.72 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=37.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHhHHHHHHHhcc
Q 047604 332 FASVWNTIVWL-MLMNFFVKIVTDTAQRYLKKQQDKEIAALTNN 374 (382)
Q Consensus 332 ls~~~~~~V~~-mi~yF~iSiVns~AQ~y~k~~~~~~~~~~~~~ 374 (382)
+.++|+.++++ ..+||-.||-.-.-|---|++|++++|+.+.+
T Consensus 5 lt~iFsvvIil~If~~iGl~IyQkikqIrgKkk~KKeie~ke~~ 48 (49)
T PF11044_consen 5 LTTIFSVVIILGIFAWIGLSIYQKIKQIRGKKKEKKEIERKEDK 48 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhc
Confidence 88999998887 55899999999999999999999999876543
No 5
>COG1238 Predicted membrane protein [Function unknown]
Probab=81.21 E-value=0.54 Score=43.24 Aligned_cols=80 Identities=23% Similarity=0.367 Sum_probs=55.0
Q ss_pred hHHHHHHHHHhhhhhccCCChHHHHHHHHhcCCCc------chhhhhhhcccCCCC----------CCCChhhhhhhhhc
Q 047604 176 PQVQLEAILWGVGTALGELPPYFISRAASISGSRL------DAMDEFDDSSTESDG----------VVPNPLFDLAGIMC 239 (382)
Q Consensus 176 ~kV~~ea~lWG~GTAiGELPPYf~araArlsG~~~------~e~ee~~~~~~~~~~----------s~PNplFDLaGi~C 239 (382)
.+....+.+=.+|.-+|-+--|+++|-+-..-.+. +..|+.++..-++.+ -|| |+-=++|
T Consensus 49 ~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ryg~~~ll~s~lp~ig----d~~t~~a 124 (161)
T COG1238 49 LNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFPGSEEALEKLQEKWYRRYGVWTLLLSWLPPIG----DVLTLLA 124 (161)
T ss_pred CchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhccccc----hHHHHHH
Confidence 34455566668899999999999999875544332 112222211001112 355 8889999
Q ss_pred cccchhHHHHHHHHHhhhhh
Q 047604 240 GQFGVPFWKFFLATLIGKAI 259 (382)
Q Consensus 240 GhFlvPFWtFFgATlIGKAi 259 (382)
|=+-+|||.|..+.+|||+.
T Consensus 125 G~~~~~~~~f~~~~~igk~~ 144 (161)
T COG1238 125 GWLRLNFLPFILLVFLGKAA 144 (161)
T ss_pred HHHHccHHHHHHHHHHHHHH
Confidence 99999999999999999985
No 6
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=68.55 E-value=16 Score=32.43 Aligned_cols=42 Identities=10% Similarity=0.203 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHhc
Q 047604 332 FASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDKEIAALTN 373 (382)
Q Consensus 332 ls~~~~~~V~~mi~yF~iSiVns~AQ~y~k~~~~~~~~~~~~ 373 (382)
+..++|.+++..++|++.+++.+.-+.=..+.++++.+.+.+
T Consensus 5 lQl~~N~~~~~~~ly~~~~~~~tI~~DI~~k~~~~~~~~~~e 46 (135)
T PF10104_consen 5 LQLFFNIILVSIFLYLVYSFISTIRSDINHKIEQYKLELLQE 46 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999988888888877766554
No 7
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.63 E-value=39 Score=25.63 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHhccCc
Q 047604 332 FASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDKEIAALTNNSS 376 (382)
Q Consensus 332 ls~~~~~~V~~mi~yF~iSiVns~AQ~y~k~~~~~~~~~~~~~~~ 376 (382)
...+.-.|++.+++-.+.+....+-++...++.++++++++++.+
T Consensus 21 ~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 21 GLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777777777788888888888888888776544
No 8
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=56.06 E-value=5.8 Score=37.99 Aligned_cols=82 Identities=26% Similarity=0.407 Sum_probs=53.8
Q ss_pred HHHHHHHHHh-----hhhhccCCChHHHHHHHHhcCC-----CcchhhhhhhcccCCCC--------CCCChhhhhhhhh
Q 047604 177 QVQLEAILWG-----VGTALGELPPYFISRAASISGS-----RLDAMDEFDDSSTESDG--------VVPNPLFDLAGIM 238 (382)
Q Consensus 177 kV~~ea~lWG-----~GTAiGELPPYf~araArlsG~-----~~~e~ee~~~~~~~~~~--------s~PNplFDLaGi~ 238 (382)
.+...-..|| +|+-+|....|+.+|..-.... ..+..+.+++.. ++++ -+|=--||+.=..
T Consensus 75 ~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~~~~~~~~~~~~~~~~~~~~-~~~g~~~i~~lrl~P~~P~~lvn~a 153 (223)
T COG0398 75 GGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWVLKFVGGKEKVQRIDAGL-ERNGFWAILLLRLIPIFPFDLVNYA 153 (223)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccHHHHHHHHHH-HhCChHHHHHHHHhhcCCHHHHHHH
Confidence 3444444555 5888999999999986532110 112223333322 2222 3454458888899
Q ss_pred ccccchhHHHHHHHHHhhhhh
Q 047604 239 CGQFGVPFWKFFLATLIGKAI 259 (382)
Q Consensus 239 CGhFlvPFWtFFgATlIGKAi 259 (382)
||-.-||+|.|+.||++||..
T Consensus 154 aglt~is~~~f~ias~lG~~P 174 (223)
T COG0398 154 AGLTGISFRDFAIATLLGKLP 174 (223)
T ss_pred HhccCCcHHHHHHHHHHhccc
Confidence 999999999999999999975
No 9
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=50.31 E-value=27 Score=39.86 Aligned_cols=110 Identities=22% Similarity=0.486 Sum_probs=59.7
Q ss_pred hhhhhhhhhccccchhHHHHHHHHHhhhhhhhhccceeeEEeeechhHHHHH-----------HHHHHHHhhcCCCCCCc
Q 047604 230 PLFDLAGIMCGQFGVPFWKFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWI-----------ENELIWVLSLVPGFAPV 298 (382)
Q Consensus 230 plFDLaGi~CGhFlvPFWtFFgATlIGKAiIK~hiQ~~fvI~~fs~~~ve~~-----------e~~i~~~l~~vp~~~~~ 298 (382)
|.|-|-|++|| +.|-..|=.|=|.+++ .=+|.....+ ...++..+.-=|++|++
T Consensus 330 p~FallGl~cG-------------llGa~fVylhR~ivlf--~Rkn~~~~~~f~k~~llyp~~~a~v~ssltfP~GlG~f 394 (931)
T KOG0476|consen 330 PFFALLGLLCG-------------LLGALFVYLHRRIVLF--LRKNRYAKKLFQKSRLLYPAFIALVFSSLTFPPGLGQF 394 (931)
T ss_pred HHHHHHHHHHh-------------cccceeeeeeeeeeee--ehhhHHHHHHHhhCccHHHHHHHHHHhheecCCccccc
Confidence 78999999999 4566666677665433 3344443322 12234445555677776
Q ss_pred chhHHHHHHHHHHHhcCC-C-----CC---CCcccccchhhh--HHHHHHHHHHHHHHHHHHHHHhhH
Q 047604 299 LPSLVAKLHTMRAKYLKP-Q-----QP---SSHIKVKKWDFS--FASVWNTIVWLMLMNFFVKIVTDT 355 (382)
Q Consensus 299 l~~~~~~l~~~k~k~~~~-~-----~~---~~~~~~~~~~~~--ls~~~~~~V~~mi~yF~iSiVns~ 355 (382)
+-.=.. .+++-..|.++ + .. .+......|.-. =..+|+.+++..++||+.|||-++
T Consensus 395 ~aG~l~-f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~lf~l~~F~~siia~T 461 (931)
T KOG0476|consen 395 LAGRLS-FRETLVDFFDNCTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVLFFLMYFWMSIIATT 461 (931)
T ss_pred cccccc-HHhHHHHHhhcCeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHHHHHHHHHHHHHHhc
Confidence 652111 11222223221 1 11 111112333221 235788899999999999999754
No 10
>COG4040 Predicted membrane protein [Function unknown]
Probab=47.60 E-value=27 Score=29.23 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhHHH
Q 047604 341 WLMLMNFFVKIVTDTAQRYLKKQQDKE 367 (382)
Q Consensus 341 ~~mi~yF~iSiVns~AQ~y~k~~~~~~ 367 (382)
++.++||+.|-++|-|-+|--++-+++
T Consensus 54 i~A~~yFi~STi~SNAiayTi~~i~e~ 80 (85)
T COG4040 54 IAALCYFIFSTIESNAIAYTIQKIEEI 80 (85)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHh
Confidence 467899999999999999987776543
No 11
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=44.41 E-value=39 Score=26.76 Aligned_cols=34 Identities=9% Similarity=0.134 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 047604 335 VWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDKEI 368 (382)
Q Consensus 335 ~~~~~V~~mi~yF~iSiVns~AQ~y~k~~~~~~~ 368 (382)
.++.+++++++++.+++|++-.+.+..+.+..++
T Consensus 3 ~l~~~l~~~v~~~~~~~v~~~~~~~~~~~~~~~~ 36 (85)
T TIGR02209 3 KLYVLLLLAILVSAISVVSAQHQTRQLNNELQKL 36 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888777776655544333
No 12
>PF14163 SieB: Superinfection exclusion protein B
Probab=40.93 E-value=68 Score=28.42 Aligned_cols=29 Identities=7% Similarity=0.066 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 047604 336 WNTIVWLMLMNFFVKIVTDTAQRYLKKQQ 364 (382)
Q Consensus 336 ~~~~V~~mi~yF~iSiVns~AQ~y~k~~~ 364 (382)
....+++.++||+..+++...+...+|.+
T Consensus 36 i~~~fl~s~s~li~~~~~~~~~~~~~~~~ 64 (151)
T PF14163_consen 36 IGLIFLFSVSYLIAQLLSFIYKEAKDRYQ 64 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444577899999999999887443333
No 13
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=38.97 E-value=1.2e+02 Score=29.44 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCcchhHHHHhhchhhHHHhHhhh
Q 047604 76 KHLEELSEYFRFGLWWVALGVASSIGLGSGLHTFVLYLGPHIALFTIKAM 125 (382)
Q Consensus 76 ~~v~~~~~~~~~~~wWvgLGVLSSVGLGTGLHTflLyLgPHIa~vtlaA~ 125 (382)
.+..-...-....+||+...+.++.|-...++-++....|++.....+.+
T Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~l~p~~a~w~p~ii~~~~~~~ 350 (354)
T PF03739_consen 301 RISSLFIALLLGFLYYILFSFFSSLGENGNLPPFIAAWLPNIIFLILGLY 350 (354)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHH
Confidence 44556666677788999999999999999999999999999998888764
No 14
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=34.78 E-value=40 Score=26.58 Aligned_cols=37 Identities=8% Similarity=0.255 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q 047604 330 FSFASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDK 366 (382)
Q Consensus 330 ~~ls~~~~~~V~~mi~yF~iSiVns~AQ~y~k~~~~~ 366 (382)
.++.-+--.|+++.+++|+++.+..+.+++.++....
T Consensus 7 i~i~Gm~iVF~~L~lL~~~i~l~~~~~~~~~~~~~~~ 43 (79)
T PF04277_consen 7 IMIIGMGIVFLVLILLILVISLMSKLIRKFAPKEKPA 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3445555667778899999999999976665554443
No 15
>COG5085 Predicted membrane protein [Function unknown]
Probab=26.70 E-value=1.1e+02 Score=29.89 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHHhHHHHHH
Q 047604 332 FASVWNTIVWLMLMNFFVKIVTDTAQ------RYLKKQQDKEIAA 370 (382)
Q Consensus 332 ls~~~~~~V~~mi~yF~iSiVns~AQ------~y~k~~~~~~~~~ 370 (382)
+.-++|.+|+..++||++++|-.+-. .|+|++++.+++.
T Consensus 86 LQLflNaiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~q~a~ 130 (230)
T COG5085 86 LQLFLNAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQHQIAE 130 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56679999999999999999866533 3455555555543
No 16
>KOG4503 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=26.70 E-value=1.1e+02 Score=29.89 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHHhHHHHHH
Q 047604 332 FASVWNTIVWLMLMNFFVKIVTDTAQ------RYLKKQQDKEIAA 370 (382)
Q Consensus 332 ls~~~~~~V~~mi~yF~iSiVns~AQ------~y~k~~~~~~~~~ 370 (382)
+.-++|.+|+..++||++++|-.+-. .|+|++++.+++.
T Consensus 86 LQLflNaiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~q~a~ 130 (230)
T KOG4503|consen 86 LQLFLNAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQHQIAE 130 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56679999999999999999866533 3455555555543
No 17
>PRK13952 mscL large-conductance mechanosensitive channel; Provisional
Probab=23.38 E-value=96 Score=28.31 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=24.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 047604 327 KWDFSFASVWNTIVWLMLMNFFVKIVTDT 355 (382)
Q Consensus 327 ~~~~~ls~~~~~~V~~mi~yF~iSiVns~ 355 (382)
+++..++.+.|-+++..+.||++..+|.+
T Consensus 84 ~yG~fl~avInFlIiA~vvf~ivk~~nk~ 112 (142)
T PRK13952 84 AYGNFITVLINFLILAFIIFLMVKAINRL 112 (142)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556899999999999999999999865
No 18
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=23.21 E-value=1.2e+02 Score=27.16 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 047604 328 WDFSFASVWNTIVWLMLMNFFVKIVTDT 355 (382)
Q Consensus 328 ~~~~ls~~~~~~V~~mi~yF~iSiVns~ 355 (382)
++..++.+.|-+++..+.||++..+|.+
T Consensus 66 yG~fl~avinFlIia~vvF~~vk~~nk~ 93 (125)
T PRK13953 66 YGAFIQSIVDFLIIAFAIFIFVKVLTSF 93 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455899999999999999999999975
No 19
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=20.45 E-value=2.1e+02 Score=28.09 Aligned_cols=22 Identities=14% Similarity=0.638 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 047604 80 ELSEYFRFGLWWVALGVASSIG 101 (382)
Q Consensus 80 ~~~~~~~~~~wWvgLGVLSSVG 101 (382)
+++++..||.||+.-+++++.-
T Consensus 28 ~i~el~~W~~YWIv~A~~t~~e 49 (225)
T KOG1726|consen 28 DIRELLRWMMYWIVFAALTVFE 49 (225)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3888999999999999998753
Done!